Query 048499
Match_columns 135
No_of_seqs 108 out of 513
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 17:25:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048499.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048499hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2brj_A Arabidopsis thaliana ge 98.8 9.6E-08 3.3E-12 72.6 11.2 102 21-134 42-147 (188)
2 4h6b_A Allene oxide cyclase; B 98.5 3.8E-06 1.3E-10 64.0 13.0 90 22-118 51-144 (195)
3 2q03_A Uncharacterized protein 43.4 85 0.0029 22.2 11.0 86 42-132 45-136 (138)
4 3h6j_A Neuraminidase, sialidas 32.1 34 0.0012 27.5 3.2 56 58-115 371-436 (438)
5 2ooj_A Hypothetical protein; s 25.7 1.8E+02 0.0061 20.5 12.1 74 41-115 40-120 (141)
6 2krs_A Probable enterotoxin; a 19.9 55 0.0019 20.0 1.9 16 33-48 12-27 (74)
7 2kt8_A Probable surface protei 19.1 87 0.003 19.3 2.8 15 33-47 14-28 (76)
8 2kq8_A Cell WALL hydrolase; GF 17.6 39 0.0013 20.5 0.8 16 33-48 13-28 (70)
9 2qqr_A JMJC domain-containing 9.0 1.6E+02 0.0054 20.4 1.8 31 61-96 88-118 (118)
10 2xdp_A Lysine-specific demethy 8.9 2E+02 0.0068 20.0 2.4 31 61-96 89-119 (123)
No 1
>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A
Probab=98.76 E-value=9.6e-08 Score=72.57 Aligned_cols=102 Identities=18% Similarity=0.054 Sum_probs=78.5
Q ss_pred CCCceEEEEeecceeecCCCCCCceeeeEEEEEEeCC----CccEEEEEEEEEEecCCCCCceEEEecccCCCCCceeeE
Q 048499 21 PTRFDIVMIADDSLIETRNPQSKLVGRAKGLYGSTCQ----HQLAIIMSMSFVFVDGPNNGNCISLFGNNKSIVPVHKMP 96 (135)
Q Consensus 21 ~~~FG~~~v~Dd~lt~gp~~~S~~VGraqG~~~~~~~----~~~~~~~~~~~vf~~g~~~GSTl~v~G~~~~~~~~~E~~ 96 (135)
...-|+.+.|+++|.++.. -+.||.-+|+-+.... .+..+--.+++.|-+ .| .|+++|..... +...++
T Consensus 42 ~~slGDlvpFsNkLydg~l--~~rvG~taG~Cv~~~~~p~~~gdryE~tyS~yfgd---~G-hISvQGpy~t~-~Dt~LA 114 (188)
T 2brj_A 42 MFGLGDLVPFTNKLYTGDL--KKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGD---YG-HLSVQGPYLTY-EDSFLA 114 (188)
T ss_dssp SSCTTCEEEECCEEEETTS--SCEEEEEEEEEEEEEEEGGGTEEEEEEEEEEECGG---GE-EEEEEEEEETT-BCEEEE
T ss_pred CcCcccEEeeccccccccc--ceeccccceEEEEEEecCCCCCcEEEEEEEEEeCC---Cc-eEEEecccccc-ccceee
Confidence 3568999999999996654 5889999999887753 334566667777843 24 89999996332 556899
Q ss_pred EEecccccccceEEEEEEEEEeecCCCCEEEEEEEEEE
Q 048499 97 IVSNITMFLLAGGYTVAQTHRVDFKSTDAIVGCIVISV 134 (135)
Q Consensus 97 VVGGTG~Fr~ArGya~~~t~~~~~~~~~~v~e~~V~v~ 134 (135)
|+||||.|+.|+|.+++....+. .-++|.+||.
T Consensus 115 ITGGTGif~gA~G~Vkl~~i~~P-----~k~~yTf~L~ 147 (188)
T 2brj_A 115 ITGGAGIFEGAYGQVKLQQLVYP-----TKLFYTFYLK 147 (188)
T ss_dssp EEEEEETTTTCEEEEEEEEEETT-----TEEEEEEEEE
T ss_pred EecCcceEcceEEEEEEEeeccC-----ceEEEEEEEe
Confidence 99999999999999999997753 2267777764
No 2
>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*
Probab=98.48 E-value=3.8e-06 Score=64.04 Aligned_cols=90 Identities=16% Similarity=0.110 Sum_probs=70.6
Q ss_pred CCceEEEEeecceeecCCCCCCceeeeEEEEEEeC----CCccEEEEEEEEEEecCCCCCceEEEecccCCCCCceeeEE
Q 048499 22 TRFDIVMIADDSLIETRNPQSKLVGRAKGLYGSTC----QHQLAIIMSMSFVFVDGPNNGNCISLFGNNKSIVPVHKMPI 97 (135)
Q Consensus 22 ~~FG~~~v~Dd~lt~gp~~~S~~VGraqG~~~~~~----~~~~~~~~~~~~vf~~g~~~GSTl~v~G~~~~~~~~~E~~V 97 (135)
...|+++.|.++|.++.. -+-||-..|+-+... ..+...--.+++.|.+ .| +|+++|..-. -...-++|
T Consensus 51 ~slGDLvpFsnkLydg~l--~~RiGitaG~Cv~i~~~~~k~GdryEci~Tf~fGD---~G-hIsvqGpy~t-~eDs~lAI 123 (195)
T 4h6b_A 51 NSLGDLVPFSNKIYDGSL--KTRLGITAGLCTLISHSDQKNGDRYEALYSFYFGD---YG-HISVQGPYIT-YEDSYLAI 123 (195)
T ss_dssp CCTTCEEEECCEEEETTS--CCEEEEEEEEEEEEEEETTTTEEEEEEEEEEECGG---GC-EEEEEEEEET-TBCEEEEE
T ss_pred cccccccccccccccccc--cccccccccEEEEEeecCCCCCceEEEEEEEEecC---Cc-eEEEecceec-cCceeEEE
Confidence 469999999999999987 678999999987664 2223444556777754 35 8999999743 34556999
Q ss_pred EecccccccceEEEEEEEEEe
Q 048499 98 VSNITMFLLAGGYTVAQTHRV 118 (135)
Q Consensus 98 VGGTG~Fr~ArGya~~~t~~~ 118 (135)
+||||.|+.|+|-+++..+-+
T Consensus 124 TGGTGiF~Ga~GqVkl~qiv~ 144 (195)
T 4h6b_A 124 TGGSGIFAGCYGQAKLHQIIF 144 (195)
T ss_dssp EEESGGGTTCEEEEEEEEEET
T ss_pred ecCcceEcccEEEEEEeEeee
Confidence 999999999999999887654
No 3
>2q03_A Uncharacterized protein; YP_563039.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.80A {Shewanella denitrificans OS217} SCOP: b.159.2.1
Probab=43.44 E-value=85 Score=22.21 Aligned_cols=86 Identities=16% Similarity=0.091 Sum_probs=51.7
Q ss_pred CCceeeeEEEEEEeCC-CccEEEEEEEEEE-ecCCCCCceEEEe--cccCCCCCceeeEEEe--cccccccceEEEEEEE
Q 048499 42 SKLVGRAKGLYGSTCQ-HQLAIIMSMSFVF-VDGPNNGNCISLF--GNNKSIVPVHKMPIVS--NITMFLLAGGYTVAQT 115 (135)
Q Consensus 42 S~~VGraqG~~~~~~~-~~~~~~~~~~~vf-~~g~~~GSTl~v~--G~~~~~~~~~E~~VVG--GTG~Fr~ArGya~~~t 115 (135)
-.+.|++++-++.+-. ++.+.++++..+= .-...+| |+.++ |..........+-||= |||++...+|-..++.
T Consensus 45 G~leGts~~~~L~~~~~~G~A~yva~E~f~Gtl~Gr~G-sFvlqh~Gt~~~g~~~~~~~VVPgSGTGeLaGl~G~g~~~~ 123 (138)
T 2q03_A 45 GVLQGHSEIRYLMSYQDNANATFVGFEHFTGSLGDKKG-SFILQHKGLFAAGVASSEFELVERSATGDFVHLVGKGHFVS 123 (138)
T ss_dssp SSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEE-EEEEEEEEEEETTEEEEEEEECTTCCEETTTTEEEEEEEEE
T ss_pred eEEEEEEEEEEEEEEcCCCcEEEEEEEEEEEEECCceE-EEEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEEEE
Confidence 4477777888777665 4444554443222 1123455 45554 4444334457888987 9999999999998764
Q ss_pred EEeecCCCCEEEEEEEE
Q 048499 116 HRVDFKSTDAIVGCIVI 132 (135)
Q Consensus 116 ~~~~~~~~~~v~e~~V~ 132 (135)
.. .+..-++|+..
T Consensus 124 ~~----~G~h~Y~~~y~ 136 (138)
T 2q03_A 124 TE----NGQANYQITLQ 136 (138)
T ss_dssp CS----TTEEEEEEEEE
T ss_pred ec----CCceEEEEEEe
Confidence 21 23444555544
No 4
>3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL, glycosidase, hydrolase, peptidoglycan-anchor, secreted; 1.60A {Pseudomonas aeruginosa} PDB: 2w38_A
Probab=32.08 E-value=34 Score=27.47 Aligned_cols=56 Identities=21% Similarity=0.214 Sum_probs=36.2
Q ss_pred CccEEEEEEEEEEecCCCCCceEEEe-cccCCCCCceeeEEEeccccc---------ccceEEEEEEE
Q 048499 58 HQLAIIMSMSFVFVDGPNNGNCISLF-GNNKSIVPVHKMPIVSNITMF---------LLAGGYTVAQT 115 (135)
Q Consensus 58 ~~~~~~~~~~~vf~~g~~~GSTl~v~-G~~~~~~~~~E~~VVGGTG~F---------r~ArGya~~~t 115 (135)
....|-..|--.|++|.++||--++. |.-.+ ....-+-|=|||.| |.|.||-..+.
T Consensus 371 spstwnivmpsyfndgghkgsgaqvevgslni--rlgtgaavwgtgyfggidnsattrlatgyyrvra 436 (438)
T 3h6j_A 371 SPSTWNIVMPSYFNDGGHKGSGAQVEVGSLNI--RLGTGAAVWGTGYFGGIDNSATTRLATGYYRVRA 436 (438)
T ss_dssp SCSCCEECCCEEEESSSEEEESEEEEECSSEE--EEEECSBSBCCSCBTTTBCSGGGCBSEEEEEEEE
T ss_pred CCcceeEeccceecCCCcCCccceEEeeeEEE--EeccCceeeeccccccccchhhheeccceEEEEe
Confidence 34567788888899999999876664 33221 11222445578877 67888876653
No 5
>2ooj_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.84A {Shewanella oneidensis} SCOP: b.159.2.1
Probab=25.65 E-value=1.8e+02 Score=20.53 Aligned_cols=74 Identities=15% Similarity=0.012 Sum_probs=46.8
Q ss_pred CCCceeeeEEEEEEeCCC--ccEEEEEEEEEE-ecCCCCCceEEEe--cccCCCCCceeeEEEe--cccccccceEEEEE
Q 048499 41 QSKLVGRAKGLYGSTCQH--QLAIIMSMSFVF-VDGPNNGNCISLF--GNNKSIVPVHKMPIVS--NITMFLLAGGYTVA 113 (135)
Q Consensus 41 ~S~~VGraqG~~~~~~~~--~~~~~~~~~~vf-~~g~~~GSTl~v~--G~~~~~~~~~E~~VVG--GTG~Fr~ArGya~~ 113 (135)
.-.+.|+.++-++.+-.+ +.+.++.+..+= .-...+| |+.++ |...-......+-||= |||++...+|-..+
T Consensus 40 ~G~leGts~~~~L~~~~~~~G~A~yva~E~f~Gtl~Gr~G-sFvlqh~Gt~~~g~~~~~~~VVPgSGTGeL~Gl~G~g~~ 118 (141)
T 2ooj_A 40 YGELEARSQGEMLSAMTAVKGSAGYVAIEQVVGKLCGRQG-SFVLQHFGIMTDGQNRLHLEVVPHSGAGELTGLYGTMAI 118 (141)
T ss_dssp CSSEEEEEEEEEEEEECSSTTCEEEEEEEEEEEEETTEEE-EEEEEEEEEECC--CEEEEEECTTCCEETTTTEEEEEEE
T ss_pred eeeEEEEEEEEEEEEEcCCCCcEEEEEEEEEEEEECCceE-EEEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEE
Confidence 345677778888877663 444555554222 1123455 45554 5554445567889997 99999999999988
Q ss_pred EE
Q 048499 114 QT 115 (135)
Q Consensus 114 ~t 115 (135)
+.
T Consensus 119 ~~ 120 (141)
T 2ooj_A 119 SI 120 (141)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 6
>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}
Probab=19.94 E-value=55 Score=20.04 Aligned_cols=16 Identities=6% Similarity=0.171 Sum_probs=13.7
Q ss_pred ceeecCCCCCCceeee
Q 048499 33 SLIETRNPQSKLVGRA 48 (135)
Q Consensus 33 ~lt~gp~~~S~~VGra 48 (135)
.|+.+|+.++++|+.+
T Consensus 12 nvRs~P~~~~~vi~~l 27 (74)
T 2krs_A 12 NMRSGPGSNYGVIGTL 27 (74)
T ss_dssp EEESSSSTTTCEEEEE
T ss_pred EEEcCCCCCChHHEEE
Confidence 6889999999988874
No 7
>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A
Probab=19.11 E-value=87 Score=19.29 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=12.6
Q ss_pred ceeecCCCCCCceee
Q 048499 33 SLIETRNPQSKLVGR 47 (135)
Q Consensus 33 ~lt~gp~~~S~~VGr 47 (135)
.|+.+|+.++++|+.
T Consensus 14 nvR~~Ps~~~~ii~~ 28 (76)
T 2kt8_A 14 NVREGASTSSKVIGS 28 (76)
T ss_dssp EEESSSSTTSCEEEE
T ss_pred EEEcCCCCCChhhEE
Confidence 688999999988776
No 8
>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}
Probab=17.65 E-value=39 Score=20.47 Aligned_cols=16 Identities=6% Similarity=0.262 Sum_probs=13.6
Q ss_pred ceeecCCCCCCceeee
Q 048499 33 SLIETRNPQSKLVGRA 48 (135)
Q Consensus 33 ~lt~gp~~~S~~VGra 48 (135)
.|+.+|+.++++|+++
T Consensus 13 nvRsgP~~~~~ii~~l 28 (70)
T 2kq8_A 13 NVRSGEGTNYRIIGAL 28 (70)
T ss_dssp CSSSSSSSCTTSCCCC
T ss_pred EEEcCCCCCCceEEEE
Confidence 5789999999999874
No 9
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=8.96 E-value=1.6e+02 Score=20.36 Aligned_cols=31 Identities=16% Similarity=0.196 Sum_probs=19.1
Q ss_pred EEEEEEEEEEecCCCCCceEEEecccCCCCCceeeE
Q 048499 61 AIIMSMSFVFVDGPNNGNCISLFGNNKSIVPVHKMP 96 (135)
Q Consensus 61 ~~~~~~~~vf~~g~~~GSTl~v~G~~~~~~~~~E~~ 96 (135)
.....+++.|++| |. ..+-|+.+.....|+|
T Consensus 88 ~~~~~Y~V~feDg----s~-~~~kR~~iyt~~E~lP 118 (118)
T 2qqr_A 88 HPIQMYQVEFEDG----SQ-LVVKRDDVYTLDEELP 118 (118)
T ss_dssp EEEEEEEEEETTS----CE-EEECGGGEEETTSCCC
T ss_pred eEEEEEEEEECCC----CE-EEEcHHHeeccccCCc
Confidence 3556788999865 44 4446666655555554
No 10
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=8.94 E-value=2e+02 Score=19.97 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=20.4
Q ss_pred EEEEEEEEEEecCCCCCceEEEecccCCCCCceeeE
Q 048499 61 AIIMSMSFVFVDGPNNGNCISLFGNNKSIVPVHKMP 96 (135)
Q Consensus 61 ~~~~~~~~vf~~g~~~GSTl~v~G~~~~~~~~~E~~ 96 (135)
.....+++.|++| | ...+-|+.+.....|+|
T Consensus 89 ~~~~~YtV~FeDg----s-~~~~kR~~iyt~~E~lP 119 (123)
T 2xdp_A 89 NIAHMYQVEFEDG----S-QIAMKREDIYTLDEELP 119 (123)
T ss_dssp EEEEEEEEECTTS----C-EEEEEGGGCCCSSSCCC
T ss_pred eeEEEEEEEECCC----C-eEEecHHHccccccccc
Confidence 3557778999875 4 44556777766666655
Done!