BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048501
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AV1|A Chain A, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV1|E Chain E, The Human Nucleosome Structure Containing The Histone
Variant H3.2
Length = 139
Score = 172 bits (437), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 93/144 (64%), Positives = 100/144 (69%), Gaps = 6/144 (4%)
Query: 1 GTHTF-TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREI 59
G+H TK AR G P R +++ R+ S ATGGVKKPH +RPGTVALREI
Sbjct: 1 GSHMARTKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREI 55
Query: 60 RKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCT 119
R+YQKSTELLIRKLPFQRLVREIAQDFKTDL F GLFEDTNLC
Sbjct: 56 RRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCA 115
Query: 120 IHTKRVTIMPKDIQLARRIRGERA 143
IH KRVTIMPKDIQLARRIRGERA
Sbjct: 116 IHAKRVTIMPKDIQLARRIRGERA 139
>pdb|2IO5|B Chain B, Crystal Structure Of The Cia- Histone H3-H4 Complex
pdb|2NQB|A Chain A, Drosophila Nucleosome Structure
pdb|2NQB|E Chain E, Drosophila Nucleosome Structure
pdb|2PYO|A Chain A, Drosophila Nucleosome Core
pdb|2PYO|E Chain E, Drosophila Nucleosome Core
pdb|3C9K|C Chain C, Model Of Histone Octamer Tubular Crystals
pdb|3C9K|G Chain G, Model Of Histone Octamer Tubular Crystals
Length = 135
Score = 172 bits (435), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 91/138 (65%), Positives = 97/138 (70%), Gaps = 5/138 (3%)
Query: 6 TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
TK AR G P R +++ R+ S ATGGVKKPH +RPGTVALREIR+YQKS
Sbjct: 3 TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREIRRYQKS 57
Query: 66 TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
TELLIRKLPFQRLVREIAQDFKTDL F GLFEDTNLC IH KRV
Sbjct: 58 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRV 117
Query: 126 TIMPKDIQLARRIRGERA 143
TIMPKDIQLARRIRGERA
Sbjct: 118 TIMPKDIQLARRIRGERA 135
>pdb|2HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein
pdb|1EQZ|C Chain C, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1EQZ|G Chain G, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1HQ3|C Chain C, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1HQ3|G Chain G, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1TZY|C Chain C, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|1TZY|G Chain G, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|2ARO|C Chain C, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2ARO|G Chain G, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2F8N|A Chain A, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
pdb|2F8N|E Chain E, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 136
Score = 172 bits (435), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 91/138 (65%), Positives = 97/138 (70%), Gaps = 5/138 (3%)
Query: 6 TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
TK AR G P R +++ R+ S ATGGVKKPH +RPGTVALREIR+YQKS
Sbjct: 4 TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREIRRYQKS 58
Query: 66 TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
TELLIRKLPFQRLVREIAQDFKTDL F GLFEDTNLC IH KRV
Sbjct: 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRV 118
Query: 126 TIMPKDIQLARRIRGERA 143
TIMPKDIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136
>pdb|3AFA|A Chain A, The Human Nucleosome Structure
pdb|3AFA|E Chain E, The Human Nucleosome Structure
pdb|3AZI|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZI|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZJ|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZJ|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZK|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZK|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZL|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZL|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZM|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZM|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZN|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
pdb|3AZN|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
Length = 139
Score = 171 bits (433), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/144 (64%), Positives = 100/144 (69%), Gaps = 6/144 (4%)
Query: 1 GTHTF-TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREI 59
G+H TK AR G P R +++ R+ S ATGGVKKPH +RPGTVALREI
Sbjct: 1 GSHMARTKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREI 55
Query: 60 RKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCT 119
R+YQKSTELLIRKLPFQRLVREIAQDFKTDL F GLFEDTNLC
Sbjct: 56 RRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCA 115
Query: 120 IHTKRVTIMPKDIQLARRIRGERA 143
IH KRVTIMPKDIQLARRIRGERA
Sbjct: 116 IHAKRVTIMPKDIQLARRIRGERA 139
>pdb|2CV5|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
pdb|2CV5|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
pdb|1U35|A Chain A, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|1U35|E Chain E, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
Length = 136
Score = 171 bits (433), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 91/138 (65%), Positives = 97/138 (70%), Gaps = 5/138 (3%)
Query: 6 TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
TK AR G P R +++ R+ S ATGGVKKPH +RPGTVALREIR+YQKS
Sbjct: 4 TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREIRRYQKS 58
Query: 66 TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
TELLIRKLPFQRLVREIAQDFKTDL F GLFEDTNLC IH KRV
Sbjct: 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRV 118
Query: 126 TIMPKDIQLARRIRGERA 143
TIMPKDIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136
>pdb|3LEL|A Chain A, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|E Chain E, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|K Chain K, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|O Chain O, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
Length = 136
Score = 170 bits (431), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 90/138 (65%), Positives = 96/138 (69%), Gaps = 5/138 (3%)
Query: 6 TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
TK AR G P R +++ R+ S ATGGVKKPH +RPGTVALREIR+YQKS
Sbjct: 4 TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREIRRYQKS 58
Query: 66 TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
TELLIRKLPFQRLVREIAQDFKTDL F LFEDTNLC IH KRV
Sbjct: 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV 118
Query: 126 TIMPKDIQLARRIRGERA 143
TIMPKDIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136
>pdb|3AV2|A Chain A, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AV2|E Chain E, The Human Nucleosome Structure Containing The Histone
Variant H3.3
Length = 139
Score = 170 bits (431), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/144 (63%), Positives = 100/144 (69%), Gaps = 6/144 (4%)
Query: 1 GTHTF-TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREI 59
G+H TK AR G P R +++ R+ S +TGGVKKPH +RPGTVALREI
Sbjct: 1 GSHMARTKQTARKSTGGKAP--RKQLATKAARK---SAPSTGGVKKPHRYRPGTVALREI 55
Query: 60 RKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCT 119
R+YQKSTELLIRKLPFQRLVREIAQDFKTDL F GLFEDTNLC
Sbjct: 56 RRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCA 115
Query: 120 IHTKRVTIMPKDIQLARRIRGERA 143
IH KRVTIMPKDIQLARRIRGERA
Sbjct: 116 IHAKRVTIMPKDIQLARRIRGERA 139
>pdb|1KX3|A Chain A, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX3|E Chain E, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX4|A Chain A, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX4|E Chain E, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX5|A Chain A, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1KX5|E Chain E, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1S32|A Chain A, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1S32|E Chain E, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1ZBB|A Chain A, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|E Chain E, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|AA Chain a, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|EE Chain e, Structure Of The 4_601_167 Tetranucleosome
pdb|2FJ7|A Chain A, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2FJ7|E Chain E, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2NZD|A Chain A, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|2NZD|E Chain E, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|3B6F|A Chain A, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6F|E Chain E, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6G|A Chain A, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3B6G|E Chain E, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3C1B|A Chain A, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1B|E Chain E, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3KUY|A Chain A, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3KUY|E Chain E, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3LJA|A Chain A, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3LJA|E Chain E, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3MGP|A Chain A, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGP|E Chain E, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGQ|A Chain A, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGQ|E Chain E, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGR|A Chain A, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGR|E Chain E, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGS|A Chain A, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MGS|E Chain E, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MVD|A Chain A, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|E Chain E, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3LZ0|A Chain A, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ0|E Chain E, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ1|A Chain A, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3LZ1|E Chain E, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3O62|A Chain A, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3O62|E Chain E, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3MNN|A Chain A, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3MNN|E Chain E, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3TU4|A Chain A, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3TU4|E Chain E, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3REH|A Chain A, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REH|E Chain E, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REI|A Chain A, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REI|E Chain E, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REJ|A Chain A, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REJ|E Chain E, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REK|A Chain A, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REK|E Chain E, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REL|A Chain A, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REL|E Chain E, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3UT9|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UT9|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UTA|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTA|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTB|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|3UTB|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
Length = 135
Score = 170 bits (430), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 90/138 (65%), Positives = 96/138 (69%), Gaps = 5/138 (3%)
Query: 6 TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
TK AR G P R +++ R+ S ATGGVKKPH +RPGTVALREIR+YQKS
Sbjct: 3 TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREIRRYQKS 57
Query: 66 TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
TELLIRKLPFQRLVREIAQDFKTDL F LFEDTNLC IH KRV
Sbjct: 58 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV 117
Query: 126 TIMPKDIQLARRIRGERA 143
TIMPKDIQLARRIRGERA
Sbjct: 118 TIMPKDIQLARRIRGERA 135
>pdb|4HGA|B Chain B, Structure Of The Variant Histone H3.3-H4 Heterodimer In
Complex With Its Chaperone Daxx
Length = 136
Score = 170 bits (430), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 90/138 (65%), Positives = 97/138 (70%), Gaps = 5/138 (3%)
Query: 6 TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
TK AR G P R +++ R+ S +TGGVKKPH +RPGTVALREIR+YQKS
Sbjct: 4 TKQTARKSTGGKAP--RKQLATKAARK---SAPSTGGVKKPHRYRPGTVALREIRRYQKS 58
Query: 66 TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
TELLIRKLPFQRLVREIAQDFKTDL F GLFEDTNLC IH KRV
Sbjct: 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRV 118
Query: 126 TIMPKDIQLARRIRGERA 143
TIMPKDIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136
>pdb|3AZH|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZH|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
Length = 139
Score = 169 bits (429), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/144 (63%), Positives = 100/144 (69%), Gaps = 6/144 (4%)
Query: 1 GTHTF-TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREI 59
G+H TK AR G P R +++ R+ S ATGGVKKPH +RPGTVALREI
Sbjct: 1 GSHMARTKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREI 55
Query: 60 RKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCT 119
R+YQKSTELLIRKLPFQRLVREIAQDFKTDL F GLFEDTNLC
Sbjct: 56 RRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCA 115
Query: 120 IHTKRVTIMPKDIQLARRIRGERA 143
IH KRVTIMP+DIQLARRIRGERA
Sbjct: 116 IHAKRVTIMPQDIQLARRIRGERA 139
>pdb|3AZG|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZG|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
Length = 139
Score = 169 bits (429), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/144 (63%), Positives = 100/144 (69%), Gaps = 6/144 (4%)
Query: 1 GTHTF-TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREI 59
G+H TK AR G P R +++ R+ S ATGGVKKPH +RPGTVALREI
Sbjct: 1 GSHMARTKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREI 55
Query: 60 RKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCT 119
R+YQKSTELLIRKLPFQRLVREIAQDFKTDL F GLFEDTNLC
Sbjct: 56 RRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCA 115
Query: 120 IHTKRVTIMPKDIQLARRIRGERA 143
IH +RVTIMPKDIQLARRIRGERA
Sbjct: 116 IHAQRVTIMPKDIQLARRIRGERA 139
>pdb|3AZF|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZF|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
Length = 139
Score = 169 bits (429), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/144 (63%), Positives = 100/144 (69%), Gaps = 6/144 (4%)
Query: 1 GTHTF-TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREI 59
G+H TK AR G P R +++ R+ S ATGGVKKPH +RPGTVALREI
Sbjct: 1 GSHMARTKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREI 55
Query: 60 RKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCT 119
R+YQKSTELLIRKLPFQRLVREIAQDF+TDL F GLFEDTNLC
Sbjct: 56 RRYQKSTELLIRKLPFQRLVREIAQDFQTDLRFQSSAVMALQEACEAYLVGLFEDTNLCA 115
Query: 120 IHTKRVTIMPKDIQLARRIRGERA 143
IH KRVTIMPKDIQLARRIRGERA
Sbjct: 116 IHAKRVTIMPKDIQLARRIRGERA 139
>pdb|3AZE|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZE|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
Length = 139
Score = 169 bits (429), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/144 (63%), Positives = 100/144 (69%), Gaps = 6/144 (4%)
Query: 1 GTHTF-TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREI 59
G+H TK AR G P R +++ R+ S ATGGVKKPH +RPGTVALREI
Sbjct: 1 GSHMARTKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREI 55
Query: 60 RKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCT 119
R+YQKSTELLIR+LPFQRLVREIAQDFKTDL F GLFEDTNLC
Sbjct: 56 RRYQKSTELLIRQLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCA 115
Query: 120 IHTKRVTIMPKDIQLARRIRGERA 143
IH KRVTIMPKDIQLARRIRGERA
Sbjct: 116 IHAKRVTIMPKDIQLARRIRGERA 139
>pdb|3AYW|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AYW|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
Length = 139
Score = 169 bits (429), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/144 (63%), Positives = 100/144 (69%), Gaps = 6/144 (4%)
Query: 1 GTHTF-TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREI 59
G+H TK AR G P R +++ R+ S ATGGVKKPH +RPGTVALREI
Sbjct: 1 GSHMARTKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREI 55
Query: 60 RKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCT 119
R+YQ+STELLIRKLPFQRLVREIAQDFKTDL F GLFEDTNLC
Sbjct: 56 RRYQQSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCA 115
Query: 120 IHTKRVTIMPKDIQLARRIRGERA 143
IH KRVTIMPKDIQLARRIRGERA
Sbjct: 116 IHAKRVTIMPKDIQLARRIRGERA 139
>pdb|3A6N|A Chain A, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3A6N|E Chain E, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
Length = 139
Score = 169 bits (428), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 92/144 (63%), Positives = 100/144 (69%), Gaps = 6/144 (4%)
Query: 1 GTHTF-TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREI 59
G+H TK AR G P R +++ R+ S ATGGVKKPH +RPGTVALREI
Sbjct: 1 GSHMARTKQTARKSTGGKAP--RKQLATKVARK---SAPATGGVKKPHRYRPGTVALREI 55
Query: 60 RKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCT 119
R+YQKSTELLIRKLPFQRL+REIAQDFKTDL F GLFEDTNLC
Sbjct: 56 RRYQKSTELLIRKLPFQRLMREIAQDFKTDLRFQSSAVMALQEACESYLVGLFEDTNLCV 115
Query: 120 IHTKRVTIMPKDIQLARRIRGERA 143
IH KRVTIMPKDIQLARRIRGERA
Sbjct: 116 IHAKRVTIMPKDIQLARRIRGERA 139
>pdb|3KXB|A Chain A, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3KXB|E Chain E, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
Length = 135
Score = 168 bits (426), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 89/138 (64%), Positives = 96/138 (69%), Gaps = 5/138 (3%)
Query: 6 TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
TK AR G P R +++ R+ S ATGGVKKPH +RPGTVALREIR+YQ+S
Sbjct: 3 TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREIRRYQES 57
Query: 66 TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
TELLIRKLPFQRLVREIAQDFKTDL F LFEDTNLC IH KRV
Sbjct: 58 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV 117
Query: 126 TIMPKDIQLARRIRGERA 143
TIMPKDIQLARRIRGERA
Sbjct: 118 TIMPKDIQLARRIRGERA 135
>pdb|1F66|A Chain A, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1F66|E Chain E, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
Length = 136
Score = 167 bits (423), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/138 (64%), Positives = 95/138 (68%), Gaps = 5/138 (3%)
Query: 6 TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
TK AR G P R +++ R+ S ATG VKKPH +RPGTVALREIR+YQKS
Sbjct: 4 TKQTARKSTGGKAP--RKQLATKAARK---SAPATGEVKKPHRYRPGTVALREIRRYQKS 58
Query: 66 TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
TELLIRKLPFQRLVREIAQDFKTDL F LFEDTNLC IH KRV
Sbjct: 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV 118
Query: 126 TIMPKDIQLARRIRGERA 143
TIMPKDIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136
>pdb|1AOI|A Chain A, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
pdb|1AOI|E Chain E, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
Length = 116
Score = 167 bits (423), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/109 (75%), Positives = 84/109 (77%)
Query: 35 NSTSATGGVKKPHCFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFXX 94
S ATGGVKKPH +RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDL F
Sbjct: 8 KSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 67
Query: 95 XXXXXXXXXXXXXXXGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGERA 143
LFEDTNLC IH KRVTIMPKDIQLARRIRGERA
Sbjct: 68 SAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 116
>pdb|1ZLA|A Chain A, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
pdb|1ZLA|E Chain E, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
Length = 135
Score = 167 bits (423), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/138 (64%), Positives = 95/138 (68%), Gaps = 5/138 (3%)
Query: 6 TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
TK AR G P R +++ R+ S ATGGVKKPH +RPGTVALREIR+YQKS
Sbjct: 3 TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREIRRYQKS 57
Query: 66 TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
TELLIRKLPFQRLVREIAQDFKTDL F LFEDTNLC IH KRV
Sbjct: 58 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV 117
Query: 126 TIMPKDIQLARRIRGERA 143
IMPKDIQLARRIRGERA
Sbjct: 118 HIMPKDIQLARRIRGERA 135
>pdb|4H9O|A Chain A, Complex Structure 2 Of DaxxH3.3(SUB5,G90M)H4
Length = 135
Score = 167 bits (422), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/138 (64%), Positives = 96/138 (69%), Gaps = 5/138 (3%)
Query: 6 TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
TK AR G P R +++ R+ S +TGGVKKPH +RPGTVALREIR+YQKS
Sbjct: 3 TKQTARKSTGGKAP--RKQLATKAARK---SAPSTGGVKKPHRYRPGTVALREIRRYQKS 57
Query: 66 TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
TELLIRKLPFQRLVREIAQDFKTDL F LFEDTNLCTIH KRV
Sbjct: 58 TELLIRKLPFQRLVREIAQDFKTDLRFQSAAIMALQEAAEAFLVALFEDTNLCTIHAKRV 117
Query: 126 TIMPKDIQLARRIRGERA 143
TI PKDIQLARRIRGERA
Sbjct: 118 TIFPKDIQLARRIRGERA 135
>pdb|4H9N|A Chain A, Complex Structure 1 Of DaxxH3.3(SUB5)H4
pdb|4H9Q|A Chain A, Complex Structure 4 Of Daxx(E225a)H3.3(SUB5)H4
Length = 135
Score = 166 bits (421), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/138 (64%), Positives = 96/138 (69%), Gaps = 5/138 (3%)
Query: 6 TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
TK AR G P R +++ R+ S +TGGVKKPH +RPGTVALREIR+YQKS
Sbjct: 3 TKQTARKSTGGKAP--RKQLATKAARK---SAPSTGGVKKPHRYRPGTVALREIRRYQKS 57
Query: 66 TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
TELLIRKLPFQRLVREIAQDFKTDL F LFEDTNLCTIH KRV
Sbjct: 58 TELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEAAEAFLVALFEDTNLCTIHAKRV 117
Query: 126 TIMPKDIQLARRIRGERA 143
TI PKDIQLARRIRGERA
Sbjct: 118 TIFPKDIQLARRIRGERA 135
>pdb|1M18|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M18|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
Length = 135
Score = 166 bits (419), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 83/105 (79%)
Query: 39 ATGGVKKPHCFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFXXXXXX 98
ATGGVKKPH +RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDL F
Sbjct: 31 ATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVM 90
Query: 99 XXXXXXXXXXXGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGERA 143
LFEDTNLC IH KRVTIMPKDIQLARRIRGERA
Sbjct: 91 ALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135
>pdb|3C1C|A Chain A, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|E Chain E, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
Length = 135
Score = 165 bits (418), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 88/138 (63%), Positives = 94/138 (68%), Gaps = 5/138 (3%)
Query: 6 TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
TK AR G P R +++ R+ S ATGGVKKPH +RPGTVALREIR+YQKS
Sbjct: 3 TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREIRRYQKS 57
Query: 66 TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
TELLIRKLPFQRLVREIAQDF TDL F LFEDTNL IH KRV
Sbjct: 58 TELLIRKLPFQRLVREIAQDFXTDLRFQSSAVMALQEASEAYLVALFEDTNLAAIHAKRV 117
Query: 126 TIMPKDIQLARRIRGERA 143
TIMPKDIQLARRIRGERA
Sbjct: 118 TIMPKDIQLARRIRGERA 135
>pdb|1P3B|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 165 bits (417), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/138 (63%), Positives = 94/138 (68%), Gaps = 5/138 (3%)
Query: 6 TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
TK AR G P R +++ R+ S ATG KKPH +RPGTVALREIR+YQKS
Sbjct: 3 TKQTARKSTGGKAP--RKQLATKAARK---SAPATGESKKPHRYRPGTVALREIRRYQKS 57
Query: 66 TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
TELLIRKLPFQRLVREIAQDFKTDL F LFEDTNLC IH KRV
Sbjct: 58 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV 117
Query: 126 TIMPKDIQLARRIRGERA 143
TIMPKDIQLARRIRGERA
Sbjct: 118 TIMPKDIQLARRIRGERA 135
>pdb|4H9P|A Chain A, Complex Structure 3 Of DaxxH3.3(SUB5,G90A)H4
pdb|4H9R|A Chain A, Complex Structure 5 Of Daxx(E225a)H3.3(SUB5,G90A)H4
Length = 135
Score = 164 bits (414), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/138 (64%), Positives = 96/138 (69%), Gaps = 5/138 (3%)
Query: 6 TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
TK AR G P R +++ R+ S +TGGVKKPH +RPGTVALREIR+YQKS
Sbjct: 3 TKQTARKSTGGKAP--RKQLATKAARK---SAPSTGGVKKPHRYRPGTVALREIRRYQKS 57
Query: 66 TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
TELLIRKLPFQRLVREIAQDFKTDL F LFEDTNLCTIH KRV
Sbjct: 58 TELLIRKLPFQRLVREIAQDFKTDLRFQSAAIAALQEAAEAFLVALFEDTNLCTIHAKRV 117
Query: 126 TIMPKDIQLARRIRGERA 143
TI PKDIQLARRIRGERA
Sbjct: 118 TIFPKDIQLARRIRGERA 135
>pdb|1P3K|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 163 bits (413), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 87/138 (63%), Positives = 93/138 (67%), Gaps = 5/138 (3%)
Query: 6 TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
TK AR G P R +++ R+ S ATG KKPH +RPGTVALREIR+YQKS
Sbjct: 3 TKQTARKSTGGKAP--RKQLATKAARK---SAPATGESKKPHRYRPGTVALREIRRYQKS 57
Query: 66 TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
TELLIRKLPFQRLVREIAQDFKTDL F LFEDTNLC IH KRV
Sbjct: 58 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV 117
Query: 126 TIMPKDIQLARRIRGERA 143
IMPKDIQLARRIRGERA
Sbjct: 118 AIMPKDIQLARRIRGERA 135
>pdb|1P3M|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 162 bits (411), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 87/138 (63%), Positives = 93/138 (67%), Gaps = 5/138 (3%)
Query: 6 TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
TK AR G P R +++ R+ S ATG KKPH +RPGTVALREIR+YQKS
Sbjct: 3 TKQTARKSTGGKAP--RKQLATKAARK---SAPATGESKKPHRYRPGTVALREIRRYQKS 57
Query: 66 TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
TELLIRKLPFQRLVREIAQDFKTDL F LFEDTNLC IH KRV
Sbjct: 58 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV 117
Query: 126 TIMPKDIQLARRIRGERA 143
IMPKDIQLARRIRGERA
Sbjct: 118 IIMPKDIQLARRIRGERA 135
>pdb|1P34|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P34|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 162 bits (411), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 87/138 (63%), Positives = 93/138 (67%), Gaps = 5/138 (3%)
Query: 6 TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
TK AR G P R +++ R+ S ATG KKPH +RPGTVALREIR+YQKS
Sbjct: 3 TKQTARKSTGGKAP--RKQLATKAARK---SAPATGESKKPHRYRPGTVALREIRRYQKS 57
Query: 66 TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
TELLIRKLPFQRLVREIAQDFKTDL F LFEDTNLC IH K V
Sbjct: 58 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKAV 117
Query: 126 TIMPKDIQLARRIRGERA 143
TIMPKDIQLARRIRGERA
Sbjct: 118 TIMPKDIQLARRIRGERA 135
>pdb|1P3A|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 162 bits (409), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 87/138 (63%), Positives = 93/138 (67%), Gaps = 5/138 (3%)
Query: 6 TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
TK AR G P R +++ R+ S ATG KKPH +RPGTVALREIR+YQKS
Sbjct: 3 TKQTARKSTGGKAP--RKQLATKAARK---SAPATGESKKPHRYRPGTVALREIRRYQKS 57
Query: 66 TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
TELLIRKLPFQRLVREIAQDFKTDL F LFEDTNLC IH K V
Sbjct: 58 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKHV 117
Query: 126 TIMPKDIQLARRIRGERA 143
TIMPKDIQLARRIRGERA
Sbjct: 118 TIMPKDIQLARRIRGERA 135
>pdb|1P3L|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 162 bits (409), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 87/138 (63%), Positives = 93/138 (67%), Gaps = 5/138 (3%)
Query: 6 TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
TK AR G P R +++ R+ S ATG KKPH +RPGTVALREIR+YQKS
Sbjct: 3 TKQTARKSTGGKAP--RKQLATKAARK---SAPATGESKKPHRYRPGTVALREIRRYQKS 57
Query: 66 TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
TELLIRKLPFQRLVREIAQDFKTDL F LFEDTNLC IH KRV
Sbjct: 58 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV 117
Query: 126 TIMPKDIQLARRIRGERA 143
IMPKDIQLARRIRGERA
Sbjct: 118 HIMPKDIQLARRIRGERA 135
>pdb|4H9S|A Chain A, Complex Structure 6 Of DaxxH3.3(SUB7)H4
pdb|4H9S|B Chain B, Complex Structure 6 Of DaxxH3.3(SUB7)H4
Length = 135
Score = 159 bits (403), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 87/138 (63%), Positives = 95/138 (68%), Gaps = 5/138 (3%)
Query: 6 TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
TK AR G P R +++ R+ S +TGGVKKPH +RPGTVALREIR+YQKS
Sbjct: 3 TKQTARKSTGGKAP--RKQLATKAARK---SAPSTGGVKKPHRYRPGTVALREIRRYQKS 57
Query: 66 TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
TELLIRKLPFQRLVREI QDFKTDL + LFEDTNLCTIH KRV
Sbjct: 58 TELLIRKLPFQRLVREICQDFKTDLRWQSAAIGALQEAAEAFLVALFEDTNLCTIHAKRV 117
Query: 126 TIMPKDIQLARRIRGERA 143
TI PKDIQLARRIRGERA
Sbjct: 118 TIFPKDIQLARRIRGERA 135
>pdb|1ID3|A Chain A, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
pdb|1ID3|E Chain E, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
Length = 135
Score = 151 bits (382), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/138 (58%), Positives = 93/138 (67%), Gaps = 5/138 (3%)
Query: 6 TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
TK AR G P R ++S R+ S +TGGVKKPH ++PGTVALREIR++QKS
Sbjct: 3 TKQTARKSTGGKAP--RKQLASKAARK---SAPSTGGVKKPHRYKPGTVALREIRRFQKS 57
Query: 66 TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
TELLIRKLPFQRLVREIAQDFKTDL F LFEDTNL IH KRV
Sbjct: 58 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRV 117
Query: 126 TIMPKDIQLARRIRGERA 143
TI K+I+LARR+RGER+
Sbjct: 118 TIQKKEIKLARRLRGERS 135
>pdb|3KWQ|A Chain A, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
pdb|3KWQ|E Chain E, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
Length = 98
Score = 150 bits (378), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/98 (74%), Positives = 76/98 (77%)
Query: 46 PHCFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXX 105
PH +RPGTVALREIR+YQ+STELLIRKLPFQRLVREIAQDFKTDL F
Sbjct: 1 PHRYRPGTVALREIRRYQESTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASE 60
Query: 106 XXXXGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGERA 143
LFEDTNLC IH KRVTIMPKDIQLARRIRGERA
Sbjct: 61 AYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 98
>pdb|1HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein, Alpha
Carbons Only
Length = 93
Score = 144 bits (364), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/93 (76%), Positives = 73/93 (78%)
Query: 51 PGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXG 110
PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDL F G
Sbjct: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG 60
Query: 111 LFEDTNLCTIHTKRVTIMPKDIQLARRIRGERA 143
LFEDTNLC IH KRVTIMPKDI+LARRIRGERA
Sbjct: 61 LFEDTNLCAIHAKRVTIMPKDIELARRIRGERA 93
>pdb|2HUE|B Chain B, Structure Of The H3-h4 Chaperone Asf1 Bound To Histones H3
And H4
Length = 77
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/75 (72%), Positives = 54/75 (72%)
Query: 69 LIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRVTIM 128
LIRKLPFQRLVREIAQDFKTDL F LFEDTNLC IH KRVTIM
Sbjct: 3 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIM 62
Query: 129 PKDIQLARRIRGERA 143
PKDIQLARRIRGERA
Sbjct: 63 PKDIQLARRIRGERA 77
>pdb|4EO5|B Chain B, Yeast Asf1 Bound To H3H4G94P MUTANT
Length = 76
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/75 (72%), Positives = 54/75 (72%)
Query: 69 LIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRVTIM 128
LIRKLPFQRLVREIAQDFKTDL F LFEDTNLC IH KRVTIM
Sbjct: 2 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIM 61
Query: 129 PKDIQLARRIRGERA 143
PKDIQLARRIRGERA
Sbjct: 62 PKDIQLARRIRGERA 76
>pdb|2YFV|A Chain A, The Heterotrimeric Complex Of Kluyveromyces Lactis Scm3,
Cse4 And H4
Length = 100
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 3/94 (3%)
Query: 49 FRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTD---LWFXXXXXXXXXXXXX 105
++P +AL EIRKYQ+ST+LLI ++PF RLV+E+ F T+ L +
Sbjct: 7 YKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASE 66
Query: 106 XXXXGLFEDTNLCTIHTKRVTIMPKDIQLARRIR 139
GL E TNL +H KR+TIM KD+QLARRIR
Sbjct: 67 AYLVGLLEHTNLLALHAKRITIMRKDMQLARRIR 100
>pdb|2YFW|A Chain A, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|C Chain C, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|E Chain E, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|G Chain G, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
Length = 92
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 56/90 (62%), Gaps = 3/90 (3%)
Query: 55 ALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTD---LWFXXXXXXXXXXXXXXXXXGL 111
AL EIRKYQ+ST+LLI ++PF RLV+E+ F T+ L + GL
Sbjct: 1 ALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGL 60
Query: 112 FEDTNLCTIHTKRVTIMPKDIQLARRIRGE 141
E TNL +H KR+TIM KD+QLARRIRG+
Sbjct: 61 LEHTNLLALHAKRITIMRKDMQLARRIRGQ 90
>pdb|3AN2|A Chain A, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AN2|E Chain E, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
Length = 143
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 56 LREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLWFXXXXXXXXXXXXXXXXXGLFE 113
L+EIRK QKST LLIRKLPF RL REI F D + LFE
Sbjct: 51 LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFE 110
Query: 114 DTNLCTIHTKRVTIMPKDIQLARRIRG 140
D L T+H RVT+ PKD+QLARRIRG
Sbjct: 111 DAYLLTLHAGRVTLFPKDVQLARRIRG 137
>pdb|3R45|A Chain A, Structure Of A Cenp-A-Histone H4 Heterodimer In Complex
With Chaperone Hjurp
Length = 156
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 56 LREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLWFXXXXXXXXXXXXXXXXXGLFE 113
L+EIRK QKST LLIRKLPF RL REI F D + LFE
Sbjct: 64 LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFE 123
Query: 114 DTNLCTIHTKRVTIMPKDIQLARRIRG 140
D L T+H RVT+ PKD+QLARRIRG
Sbjct: 124 DAYLLTLHAGRVTLFPKDVQLARRIRG 150
>pdb|3NQU|A Chain A, Crystal Structure Of Partially Trypsinized (Cenp-AH4)2
HETEROTETRAMER
Length = 140
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 56 LREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLWFXXXXXXXXXXXXXXXXXGLFE 113
L+EIRK QKST LLIRKLPF RL REI F D + LFE
Sbjct: 48 LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFE 107
Query: 114 DTNLCTIHTKRVTIMPKDIQLARRIRG 140
D L T+H RVT+ PKD+QLARRIRG
Sbjct: 108 DAYLLTLHAGRVTLFPKDVQLARRIRG 134
>pdb|2L5A|A Chain A, Structural Basis For Recognition Of Centromere Specific
Histone H3 Variant By Nonhistone Scm3
Length = 235
Score = 69.7 bits (169), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 68 LLIRKLPFQRLVREIAQDFKT---DLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKR 124
LLI K+PF RLV+E+ +F T DL + GL E TNL +H KR
Sbjct: 10 LLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKR 69
Query: 125 VTIMPKDIQLARRIRGE 141
+TIM KD+QLARRIRG+
Sbjct: 70 ITIMKKDMQLARRIRGQ 86
>pdb|3NQJ|A Chain A, Crystal Structure Of (Cenp-AH4)2 HETEROTETRAMER
Length = 82
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 68 LLIRKLPFQRLVREIAQDFK--TDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
LLIRKLPF RL REI F D + LFED L T+H RV
Sbjct: 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRV 61
Query: 126 TIMPKDIQLARRIRG 140
T+ PKD+QLARRIRG
Sbjct: 62 TLFPKDVQLARRIRG 76
>pdb|2LY8|A Chain A, The Budding Yeast Chaperone Scm3 Recognizes The Partially
Unfolded Dimer Of The Centromere-specific Cse4/h4
Histone Variant
Length = 121
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 69 LIRKLPFQRLVREIAQDFKT---DLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIH 121
LI K+PF RLV+E+ +F T DL + GL E TNL +H
Sbjct: 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALH 56
>pdb|2P5B|I Chain I, The Complex Structure Of Jmjd2a And Trimethylated H3k36
Peptide
pdb|2P5B|J Chain J, The Complex Structure Of Jmjd2a And Trimethylated H3k36
Peptide
pdb|2PXJ|I Chain I, The Complex Structure Of Jmjd2a And Monomethylated H3k36
Peptide
pdb|2PXJ|J Chain J, The Complex Structure Of Jmjd2a And Monomethylated H3k36
Peptide
Length = 22
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/19 (73%), Positives = 15/19 (78%)
Query: 36 STSATGGVKKPHCFRPGTV 54
S ATGGV KPH +RPGTV
Sbjct: 3 SAPATGGVXKPHRYRPGTV 21
>pdb|2IIJ|B Chain B, Structure Of Human Asf1a In Complex With Histone H3
Length = 18
Score = 30.4 bits (67), Expect = 0.36, Method: Composition-based stats.
Identities = 15/16 (93%), Positives = 15/16 (93%)
Query: 128 MPKDIQLARRIRGERA 143
M KDIQLARRIRGERA
Sbjct: 3 MGKDIQLARRIRGERA 18
>pdb|2CPH|A Chain A, Solution Structure Of The C-Terminal Rna Recognition
Motif Of Hypothetical Rna-Binding Protein Rbm19
Length = 107
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 58 EIRKYQKSTELLIRKLPFQRLVREIAQDFKT 88
++ K Q ++++L+R +PFQ REI + F T
Sbjct: 8 QVPKKQTTSKILVRNIPFQANQREIRELFST 38
>pdb|2AB0|A Chain A, Crystal Structure Of E. Coli Protein Yajl (Thij)
pdb|2AB0|B Chain B, Crystal Structure Of E. Coli Protein Yajl (Thij)
Length = 205
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 41 GGVKKPHCFRPGTVALREIRKYQKS 65
GG+K CFR T+ + ++++ +S
Sbjct: 74 GGIKGAECFRDSTLLVETVKQFHRS 98
>pdb|1DEQ|B Chain B, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|E Chain E, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|O Chain O, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|R Chain R, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
Length = 408
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 9 LARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS--- 65
+ ++RQ GS GR W P + G AT K +C PG L R Q +
Sbjct: 198 VIQNRQDGSVDFGR----KWDPYKQGFGNIATNAEGKKYCGVPGEYWLGNDRISQLTNMG 253
Query: 66 -TELLIR 71
T+LLI
Sbjct: 254 PTKLLIE 260
>pdb|3G7U|A Chain A, Crystal Structure Of Putative Dna Modification
Methyltransferase Encoded Within Prophage Cp-933r
(E.Coli)
Length = 376
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 12 SRQQGSPPEGRHHVSSWPP-RQLGNSTS 38
+R QG P R HV+ W RQ+GNS S
Sbjct: 325 ARLQGFPDWFRFHVTKWHSFRQIGNSVS 352
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,838,925
Number of Sequences: 62578
Number of extensions: 118890
Number of successful extensions: 332
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 240
Number of HSP's gapped (non-prelim): 51
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)