Query 048501
Match_columns 143
No_of_seqs 131 out of 608
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 17:28:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048501.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048501hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tzy_C Histone H3; histone-fol 100.0 4.4E-62 1.5E-66 370.4 5.3 131 9-143 1-136 (136)
2 2yfv_A Histone H3-like centrom 100.0 1.1E-51 3.9E-56 299.2 4.2 96 44-139 2-100 (100)
3 3nqu_A Histone H3-like centrom 100.0 8.4E-50 2.9E-54 304.0 5.7 106 35-142 28-136 (140)
4 3r45_A Histone H3-like centrom 100.0 8.2E-50 2.8E-54 308.2 3.8 106 35-142 44-152 (156)
5 2hue_B Histone H3; mini beta s 100.0 1.5E-39 5.1E-44 225.9 5.0 77 67-143 1-77 (77)
6 3nqj_A Histone H3-like centrom 100.0 2.8E-39 9.7E-44 226.9 5.0 75 68-142 2-78 (82)
7 2l5a_A Histone H3-like centrom 100.0 1.6E-36 5.4E-41 246.9 5.8 77 66-142 8-87 (235)
8 2ly8_A Budding yeast chaperone 99.9 1.6E-28 5.3E-33 183.1 6.4 73 69-141 1-114 (121)
9 1b67_A Protein (histone HMFA); 99.8 7E-21 2.4E-25 127.2 3.1 64 70-138 3-66 (68)
10 1ku5_A HPHA, archaeal histon; 99.7 4E-17 1.4E-21 109.8 3.6 64 69-137 6-69 (70)
11 1n1j_A NF-YB; histone-like PAI 99.5 6.7E-15 2.3E-19 103.7 3.6 73 64-139 3-75 (93)
12 1tzy_B Histone H2B; histone-fo 99.1 1.3E-10 4.5E-15 86.8 6.4 69 71-139 34-102 (126)
13 2nqb_D Histone H2B; nucleosome 99.1 1.4E-10 4.6E-15 86.5 6.4 69 71-139 31-99 (123)
14 1tzy_D Histone H4-VI; histone- 98.7 4.8E-09 1.6E-13 75.2 3.1 72 65-141 25-96 (103)
15 2yfw_B Histone H4, H4; cell cy 98.7 4.6E-09 1.6E-13 75.4 2.9 69 68-141 28-96 (103)
16 1id3_B Histone H4; nucleosome 98.7 1.2E-08 4E-13 73.4 3.8 69 68-141 27-95 (102)
17 3b0c_W CENP-W, centromere prot 98.6 4.6E-08 1.6E-12 66.4 4.8 66 69-138 4-69 (76)
18 2hue_C Histone H4; mini beta s 98.6 1.6E-08 5.6E-13 70.0 2.2 69 68-141 9-77 (84)
19 2jss_A Chimera of histone H2B. 98.6 1E-07 3.5E-12 75.0 6.7 69 71-139 1-69 (192)
20 1f1e_A Histone fold protein; a 98.5 4E-08 1.4E-12 75.5 3.8 70 64-138 77-146 (154)
21 3b0c_T CENP-T, centromere prot 98.5 7.8E-08 2.7E-12 70.0 5.0 70 67-141 5-74 (111)
22 1taf_A TFIID TBP associated fa 98.5 2.2E-07 7.7E-12 62.5 6.1 62 77-139 5-66 (68)
23 3v9r_A MHF1, uncharacterized p 98.4 1.6E-07 5.4E-12 66.4 3.8 65 73-137 12-78 (90)
24 4dra_A Centromere protein S; D 98.4 2.7E-07 9.1E-12 67.8 5.0 60 78-137 32-93 (113)
25 3b0b_B CENP-S, centromere prot 98.3 2.6E-07 8.9E-12 67.2 3.5 64 74-137 20-85 (107)
26 3vh5_A CENP-S; histone fold, c 98.3 5.9E-07 2E-11 68.1 5.1 64 74-137 20-85 (140)
27 1f1e_A Histone fold protein; a 98.3 4.3E-07 1.5E-11 69.7 3.7 67 70-140 5-71 (154)
28 2r10_A Chromatin structure-rem 98.3 1E-07 3.5E-12 80.8 0.0 45 11-59 3-52 (361)
29 1taf_B TFIID TBP associated fa 98.2 1.5E-06 5.2E-11 58.8 5.3 59 79-138 12-70 (70)
30 2byk_B Chrac-14; nucleosome sl 98.1 2.9E-06 1E-10 63.0 5.0 71 67-140 7-77 (128)
31 1jfi_B DR1 protein, transcript 98.1 2.6E-06 8.8E-11 66.9 4.2 74 63-140 9-82 (179)
32 4g92_C HAPE; transcription fac 98.0 5E-06 1.7E-10 60.9 5.1 70 67-137 36-105 (119)
33 1n1j_B NF-YC; histone-like PAI 98.0 6.7E-06 2.3E-10 58.1 4.8 81 55-137 3-83 (97)
34 1jfi_A Transcription regulator 97.5 6E-05 2E-09 53.3 3.5 66 71-137 10-75 (98)
35 1h3o_B Transcription initiatio 97.5 0.00023 7.7E-09 48.8 5.7 65 69-137 5-69 (76)
36 2x4w_B Histone H3.2; transcrip 97.3 9.2E-05 3.2E-09 40.1 1.5 21 35-55 6-26 (26)
37 2byk_A Chrac-16; nucleosome sl 97.2 0.00036 1.2E-08 52.5 4.3 66 71-137 18-84 (140)
38 2l5a_A Histone H3-like centrom 97.1 0.00045 1.5E-08 56.2 4.3 52 90-141 177-228 (235)
39 2nqb_C Histone H2A; nucleosome 97.0 0.001 3.4E-08 49.1 5.5 67 67-137 21-87 (123)
40 2f8n_G Core histone macro-H2A. 97.0 0.0011 3.6E-08 48.7 5.4 67 67-137 20-86 (120)
41 1tzy_A Histone H2A-IV; histone 97.0 0.0012 4.2E-08 49.0 5.5 67 67-137 23-89 (129)
42 1id3_C Histone H2A.1; nucleoso 96.8 0.0012 4.2E-08 49.1 4.5 67 67-137 23-89 (131)
43 2f8n_K Histone H2A type 1; nuc 96.8 0.0015 5E-08 49.8 5.0 67 67-137 42-108 (149)
44 1f66_C Histone H2A.Z; nucleoso 96.8 0.0017 5.8E-08 48.2 5.1 68 67-137 25-92 (128)
45 2jss_A Chimera of histone H2B. 96.6 0.00098 3.3E-08 52.1 2.9 68 67-137 103-170 (192)
46 3a1b_A DNA (cytosine-5)-methyl 90.4 0.043 1.5E-06 42.1 -0.4 20 10-33 1-20 (159)
47 3avr_B Histone H3; cupin super 76.5 1.4 4.9E-05 23.2 1.8 15 35-49 11-25 (26)
48 2k3y_A Chromatin modification- 73.8 1.5 5.2E-05 32.6 2.0 16 35-50 121-136 (136)
49 4dra_E Centromere protein X; D 59.6 20 0.00069 24.4 5.2 58 76-133 15-74 (84)
50 1r4v_A Hypothetical protein AQ 56.8 4.5 0.00015 31.3 1.7 73 61-138 16-90 (171)
51 3b0b_C CENP-X, centromere prot 56.4 24 0.00082 23.8 5.1 58 76-133 11-70 (81)
52 1wwi_A Hypothetical protein TT 53.6 6.8 0.00023 29.6 2.2 61 73-138 6-66 (148)
53 3uk6_A RUVB-like 2; hexameric 44.7 53 0.0018 25.6 6.3 51 88-138 275-329 (368)
54 3qb5_K Translin-associated pro 43.4 35 0.0012 27.7 5.1 59 54-112 58-136 (290)
55 1g8p_A Magnesium-chelatase 38 35.8 77 0.0026 24.4 5.9 51 88-138 264-321 (350)
56 3k1j_A LON protease, ATP-depen 32.9 93 0.0032 26.9 6.5 50 89-138 312-374 (604)
57 3ksy_A SOS-1, SON of sevenless 28.8 85 0.0029 29.6 5.8 63 73-137 105-167 (1049)
58 3axj_B TRAX, translin associat 27.8 1.3E+02 0.0046 24.3 6.2 59 54-112 53-133 (298)
59 1eoq_A GAG polyprotein capsid 26.1 30 0.001 24.3 1.7 17 71-87 7-23 (96)
60 1kn1_B Allophycocyanin; helix- 24.8 75 0.0026 23.5 3.8 58 53-110 79-143 (161)
61 3kw6_A 26S protease regulatory 22.6 52 0.0018 20.5 2.3 31 107-137 41-71 (78)
62 1h3o_A Transcription initiatio 22.2 55 0.0019 21.8 2.4 51 70-121 3-53 (75)
63 1njg_A DNA polymerase III subu 20.7 64 0.0022 22.5 2.7 47 88-135 201-247 (250)
64 2vml_A Phycocyanin alpha chain 20.6 74 0.0025 23.5 3.1 58 53-110 80-144 (162)
No 1
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=100.00 E-value=4.4e-62 Score=370.36 Aligned_cols=131 Identities=80% Similarity=1.156 Sum_probs=93.7
Q ss_pred hhccccCCCCCCCCCCCCCCCCCcCC-----CCCCCCCCCCCcccCCCCchhhHHHHhhhhhhhhhhccCccchhHHHHH
Q 048501 9 LARSRQQGSPPEGRHHVSSWPPRQLG-----NSTSATGGVKKPHCFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIA 83 (143)
Q Consensus 9 MartK~ta~k~~~~~~~~kaprk~~~-----ks~p~~~~~k~~~r~rpgt~alrEIr~yQkst~llI~k~pF~RLVrEI~ 83 (143)
||||||||++++| ||+|+|+++ |++|+++++++|+||+||+++|+|||+||+||+|||||+||+||||||+
T Consensus 1 MARtk~tarkstg----gkaprk~l~~k~a~k~~p~~~~~kk~~r~rpgt~alrEIr~yQkst~lLIpk~PF~RLVREI~ 76 (136)
T 1tzy_C 1 MARTKQTARKSTG----GKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIA 76 (136)
T ss_dssp ---------------------------------------------CCHHHHHHHHHHHHHHCCSCCSCHHHHHHHHHHHH
T ss_pred CCCCccccccCCC----CCCCCccccccccccCCCCCCCCCCCCCCCCchhHHHHHHHhhcchhhhhccchHHHHHHHHH
Confidence 9999999999999 999999987 6678888999999999999999999999999999999999999999999
Q ss_pred HhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhccCC
Q 048501 84 QDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGERA 143 (143)
Q Consensus 84 ~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~~~ 143 (143)
++|.+|+|||++||+|||||+|+|||+||||+|+||+||||||||++|||||++|||+++
T Consensus 77 ~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg~~~ 136 (136)
T 1tzy_C 77 QDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136 (136)
T ss_dssp HHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCCC
T ss_pred HHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhCcCC
Confidence 999999999999999999999999999999999999999999999999999999999864
No 2
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=100.00 E-value=1.1e-51 Score=299.19 Aligned_cols=96 Identities=59% Similarity=0.924 Sum_probs=67.2
Q ss_pred CCcccCCCCchhhHHHHhhhhhhhhhhccCccchhHHHHHHhhhc---cccchHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 048501 44 KKPHCFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKT---DLWFQSSAVAALQEAAEAYLVGLFEDTNLCTI 120 (143)
Q Consensus 44 k~~~r~rpgt~alrEIr~yQkst~llI~k~pF~RLVrEI~~~~~~---~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~ 120 (143)
++||||+||++||+|||+||+||+|||||+||+||||||++++++ ++|||++|+.|||||+|+|||+||||+|+||+
T Consensus 2 ~~~~r~rpgt~alrEIr~yQkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~ 81 (100)
T 2yfv_A 2 ARGTRYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLAL 81 (100)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcchHHHHHHhhcccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999987 99999999999999999999999999999999
Q ss_pred ccCccccCcccHHHHHHHh
Q 048501 121 HTKRVTIMPKDIQLARRIR 139 (143)
Q Consensus 121 HakRvTi~~kDiqLa~rir 139 (143)
||||||||++|||||++||
T Consensus 82 HAkRvTi~~kDiqLa~rir 100 (100)
T 2yfv_A 82 HAKRITIMRKDMQLARRIR 100 (100)
T ss_dssp HTTCSEECHHHHHHHHHCC
T ss_pred HcCCccCCHHHHHHHHHhC
Confidence 9999999999999999986
No 3
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=100.00 E-value=8.4e-50 Score=304.02 Aligned_cols=106 Identities=58% Similarity=0.813 Sum_probs=73.0
Q ss_pred CCCCCCCCCCCcc-cCCCCchhhHHHHhhhhhhhhhhccCccchhHHHHHHhhh--ccccchHHHHHHHHHHHHHHHHHH
Q 048501 35 NSTSATGGVKKPH-CFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLWFQSSAVAALQEAAEAYLVGL 111 (143)
Q Consensus 35 ks~p~~~~~k~~~-r~rpgt~alrEIr~yQkst~llI~k~pF~RLVrEI~~~~~--~~~rfq~~Al~aLQeaaEa~Lv~l 111 (143)
+++|++|++++++ ||+||+ |+|||+||+||+|||||+||+||||||+++|+ .++|||++||+|||||+|+|||+|
T Consensus 28 ~~~~~~g~~~~~~~r~rpg~--LrEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~L 105 (140)
T 3nqu_A 28 RRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHL 105 (140)
T ss_dssp ---------------------------------CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCcc--HHHHHHhccccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHH
Confidence 6778888777655 899998 99999999999999999999999999999998 689999999999999999999999
Q ss_pred hhhhhhhhhccCccccCcccHHHHHHHhccC
Q 048501 112 FEDTNLCTIHTKRVTIMPKDIQLARRIRGER 142 (143)
Q Consensus 112 feda~l~a~HakRvTi~~kDiqLa~rirg~~ 142 (143)
|||+|+||+||||||||++|||||++|||+.
T Consensus 106 FEdanlcAiHAkRVTIm~kDiqLArrirg~~ 136 (140)
T 3nqu_A 106 FEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 136 (140)
T ss_dssp HHHHHHHHHHTTCSEECHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHcCcccccHHHHHHHHHhcccc
Confidence 9999999999999999999999999999974
No 4
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=100.00 E-value=8.2e-50 Score=308.23 Aligned_cols=106 Identities=57% Similarity=0.794 Sum_probs=74.1
Q ss_pred CCCCCCCCCCCc-ccCCCCchhhHHHHhhhhhhhhhhccCccchhHHHHHHhhh--ccccchHHHHHHHHHHHHHHHHHH
Q 048501 35 NSTSATGGVKKP-HCFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLWFQSSAVAALQEAAEAYLVGL 111 (143)
Q Consensus 35 ks~p~~~~~k~~-~r~rpgt~alrEIr~yQkst~llI~k~pF~RLVrEI~~~~~--~~~rfq~~Al~aLQeaaEa~Lv~l 111 (143)
+++|++|+++++ +||+||+ |+|||+||+||+|||||+||+||||||+++|+ .++|||++||+|||||+|+|||+|
T Consensus 44 ksap~~g~~~~~~~r~rpg~--LrEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~L 121 (156)
T 3r45_A 44 RRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHL 121 (156)
T ss_dssp ---------------------------------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCch--HHHHHHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHH
Confidence 678888888766 7899998 99999999999999999999999999999998 689999999999999999999999
Q ss_pred hhhhhhhhhccCccccCcccHHHHHHHhccC
Q 048501 112 FEDTNLCTIHTKRVTIMPKDIQLARRIRGER 142 (143)
Q Consensus 112 feda~l~a~HakRvTi~~kDiqLa~rirg~~ 142 (143)
|||+|+||+||||||||++|||||++|||+.
T Consensus 122 FEdanLcAiHAkRVTIm~kDIqLArrIrg~~ 152 (156)
T 3r45_A 122 FEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 152 (156)
T ss_dssp HHHHHHHHHHHTCSEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccHHHHHHHHHHcccc
Confidence 9999999999999999999999999999973
No 5
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=100.00 E-value=1.5e-39 Score=225.92 Aligned_cols=77 Identities=90% Similarity=1.226 Sum_probs=74.0
Q ss_pred hhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhccCC
Q 048501 67 ELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGERA 143 (143)
Q Consensus 67 ~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~~~ 143 (143)
+|||||+||+||||||++++++++|||++|+.||||++|+|||+||||+|+||+||||||||++|||||++|||+++
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg~~~ 77 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 77 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCC-
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhCcCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999863
No 6
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.8e-39 Score=226.88 Aligned_cols=75 Identities=64% Similarity=0.939 Sum_probs=71.7
Q ss_pred hhhccCccchhHHHHHHhhh--ccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhccC
Q 048501 68 LLIRKLPFQRLVREIAQDFK--TDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGER 142 (143)
Q Consensus 68 llI~k~pF~RLVrEI~~~~~--~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~~ 142 (143)
|||||+||+||||||+++++ .++|||++|+.|||||+|+|||+||||+|+||+||||||||++|||||+||||++
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg~~ 78 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 78 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcccc
Confidence 78999999999999999998 6899999999999999999999999999999999999999999999999999985
No 7
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-36 Score=246.94 Aligned_cols=77 Identities=64% Similarity=0.971 Sum_probs=72.4
Q ss_pred hhhhhccCccchhHHHHHHhhhc---cccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhccC
Q 048501 66 TELLIRKLPFQRLVREIAQDFKT---DLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGER 142 (143)
Q Consensus 66 t~llI~k~pF~RLVrEI~~~~~~---~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~~ 142 (143)
..+||||+|||||||||++++.+ ++|||++||.|||||+|+|||+||||+|+||+|||||||||+|||||+||||+.
T Consensus 8 ~~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~~ 87 (235)
T 2l5a_A 8 KKLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQF 87 (235)
T ss_dssp ---CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCSC
T ss_pred ccccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhcc
Confidence 35899999999999999999986 899999999999999999999999999999999999999999999999999975
No 8
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.6e-28 Score=183.07 Aligned_cols=73 Identities=53% Similarity=0.822 Sum_probs=69.6
Q ss_pred hhccCccchhHHHHHHhhhc---cccchHHHHHHHHHHHHHHHHHHhhhhhhhhhc------------------------
Q 048501 69 LIRKLPFQRLVREIAQDFKT---DLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIH------------------------ 121 (143)
Q Consensus 69 lI~k~pF~RLVrEI~~~~~~---~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~H------------------------ 121 (143)
||||+||+||||||++++++ ++|||++||.|||||+|+|||+||||+|+||+|
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~iy~e~r~vl~~~ 80 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLKSF 80 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSCHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHHHHHHHHHHHHHH
Confidence 79999999999999999987 899999999999999999999999999999998
Q ss_pred --------------cCccccCcccHHHHHHHhcc
Q 048501 122 --------------TKRVTIMPKDIQLARRIRGE 141 (143)
Q Consensus 122 --------------akRvTi~~kDiqLa~rirg~ 141 (143)
++|.||+..||.++.+-.|.
T Consensus 81 l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~ 114 (121)
T 2ly8_A 81 LESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 114 (121)
T ss_dssp HHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCC
Confidence 68899999999999988875
No 9
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.81 E-value=7e-21 Score=127.20 Aligned_cols=64 Identities=23% Similarity=0.292 Sum_probs=61.3
Q ss_pred hccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHH
Q 048501 70 IRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRI 138 (143)
Q Consensus 70 I~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~ri 138 (143)
||++||+|+++++ ++.+|+++|+.+||+++|.|++.||+|||.||.|+||+||+++||++|++.
T Consensus 3 lP~a~v~Ri~k~~-----~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 3 LPIAPIGRIIKNA-----GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp SCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CCccHHHHHHhcC-----CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 7999999999999 579999999999999999999999999999999999999999999999763
No 10
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.65 E-value=4e-17 Score=109.77 Aligned_cols=64 Identities=25% Similarity=0.309 Sum_probs=60.6
Q ss_pred hhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501 69 LIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR 137 (143)
Q Consensus 69 lI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r 137 (143)
.||+.||.||+|+. ...||+++|+.+|||++|.|++.+++||+.+|.|+||.||+++||+|+.+
T Consensus 6 ~lp~a~v~Rl~r~~-----g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-----GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHc-----CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 48999999999986 46899999999999999999999999999999999999999999999964
No 11
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.51 E-value=6.7e-15 Score=103.73 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=64.4
Q ss_pred hhhhhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHh
Q 048501 64 KSTELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIR 139 (143)
Q Consensus 64 kst~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rir 139 (143)
+++++.+|+.++.|+++++.. .+.+|+.+|..+||+++|.|+..|+++|+.||.|++|.||+++||..|.+-.
T Consensus 3 ~~~d~~LP~a~i~ri~K~~~~---~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l 75 (93)
T 1n1j_A 3 REQDIYLPIANVARIMKNAIP---QTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTL 75 (93)
T ss_dssp ----CCCCHHHHHHHHHHTSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred CcccccCChhHHHHHHHHhCC---ccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHc
Confidence 457889999999999999854 3689999999999999999999999999999999999999999999998743
No 12
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=99.09 E-value=1.3e-10 Score=86.85 Aligned_cols=69 Identities=20% Similarity=0.243 Sum_probs=67.0
Q ss_pred ccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHh
Q 048501 71 RKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIR 139 (143)
Q Consensus 71 ~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rir 139 (143)
++..|..+|+.|+.++++|+++++.||..|....++++.++-.+|..++.|++|.||+++|||.|.||.
T Consensus 34 ~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 34 RKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 678899999999999999999999999999999999999999999999999999999999999999985
No 13
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=99.09 E-value=1.4e-10 Score=86.46 Aligned_cols=69 Identities=19% Similarity=0.240 Sum_probs=66.8
Q ss_pred ccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHh
Q 048501 71 RKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIR 139 (143)
Q Consensus 71 ~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rir 139 (143)
++..|..+|+.|+.++++|.++++.|+..|....++++.++-.+|..++.|++|.||+++|||.|.||.
T Consensus 31 ~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 31 RKESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp CCCCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 567899999999999999999999999999999999999999999999999999999999999999985
No 14
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=98.73 E-value=4.8e-09 Score=75.22 Aligned_cols=72 Identities=21% Similarity=0.212 Sum_probs=62.0
Q ss_pred hhhhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhcc
Q 048501 65 STELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGE 141 (143)
Q Consensus 65 st~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~ 141 (143)
+..--||+.+..||.+.. .. -|++.+|.+.|++..|.|+..+.+||..+|-|++|.||++.||++|++-.|+
T Consensus 25 ~~~~gip~~~I~Rlar~~----G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~ 96 (103)
T 1tzy_D 25 DNIQGITKPAIRRLARRG----GV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 96 (103)
T ss_dssp CGGGGSCHHHHHHHHHHT----TC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred hhcccCCHHHHHHHHHHc----Cc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCC
Confidence 333348888877777654 22 6999999999999999999999999999999999999999999999987775
No 15
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=98.72 E-value=4.6e-09 Score=75.37 Aligned_cols=69 Identities=22% Similarity=0.252 Sum_probs=59.7
Q ss_pred hhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhcc
Q 048501 68 LLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGE 141 (143)
Q Consensus 68 llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~ 141 (143)
--||+.+..||.+.. .. -|++.+|.+.|+++.|.|+..+.+||..+|-|++|.||++.||++|.+-.|+
T Consensus 28 ~gip~~~I~Rlar~~----G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~ 96 (103)
T 2yfw_B 28 QGITKPAIRRLARRG----GV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGR 96 (103)
T ss_dssp --CCHHHHHHHHHHT----TC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred ccCCHHHHHHHHHHc----Cc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 348888877777654 23 6999999999999999999999999999999999999999999999987775
No 16
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.68 E-value=1.2e-08 Score=73.39 Aligned_cols=69 Identities=22% Similarity=0.241 Sum_probs=61.9
Q ss_pred hhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhcc
Q 048501 68 LLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGE 141 (143)
Q Consensus 68 llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~ 141 (143)
--||+.|..||.+.. ...|++.+|.++|+++.|.|+..+.+||..+|-|++|-||+..||.+|++-.|+
T Consensus 27 ~~ip~~~I~Rlar~~-----Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~ 95 (102)
T 1id3_B 27 QGITKPAIRRLARRG-----GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 95 (102)
T ss_dssp GGSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 348888888887764 347999999999999999999999999999999999999999999999987775
No 17
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.60 E-value=4.6e-08 Score=66.45 Aligned_cols=66 Identities=12% Similarity=0.206 Sum_probs=58.6
Q ss_pred hhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHH
Q 048501 69 LIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRI 138 (143)
Q Consensus 69 lI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~ri 138 (143)
.+|+.+..|+++++. ++.+++.+|..+|++++|.|+..|-.+|+..+.|.+|-||+++||+.|.+.
T Consensus 4 ~LP~A~V~rI~K~~~----p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHK----PHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp CCCHHHHHHHHHHHC----TTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred cccccHHHHHHHHhC----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 357777777776654 578999999999999999999999999999999999999999999998765
No 18
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=98.58 E-value=1.6e-08 Score=70.02 Aligned_cols=69 Identities=22% Similarity=0.216 Sum_probs=60.4
Q ss_pred hhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhcc
Q 048501 68 LLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGE 141 (143)
Q Consensus 68 llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~ 141 (143)
--||+.+..||.+.. ...|++.+|.++|++..|.|+..+.+||..+|-|++|.||+..|+.+|.+-.|+
T Consensus 9 ~~ip~~~I~Riar~~-----Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~ 77 (84)
T 2hue_C 9 QGITKPAIRRLARRG-----GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 77 (84)
T ss_dssp CSSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCE
T ss_pred CCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 347888877777654 247999999999999999999999999999999999999999999999887664
No 19
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.57 E-value=1e-07 Score=74.96 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=66.0
Q ss_pred ccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHh
Q 048501 71 RKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIR 139 (143)
Q Consensus 71 ~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rir 139 (143)
++..|..+++.|+.++++|.+++.+||..|....++++..+-.+|..++.|++|.||+++|||.+.+|-
T Consensus 1 ~~~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~ 69 (192)
T 2jss_A 1 RKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLI 69 (192)
T ss_dssp CCSTTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 467899999999999999999999999999999999999999999999999999999999999999873
No 20
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.55 E-value=4e-08 Score=75.45 Aligned_cols=70 Identities=16% Similarity=0.046 Sum_probs=64.4
Q ss_pred hhhhhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHH
Q 048501 64 KSTELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRI 138 (143)
Q Consensus 64 kst~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~ri 138 (143)
..-++.||+.|..|+.|+- ...|++++|-.+|+++.|.|+..+.++|+..|.|++|.||++.||+++..-
T Consensus 77 d~~~l~lP~a~V~Ri~k~~-----g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 77 DYDGELFGRATVRRILKRA-----GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp TCCSCCCCHHHHHHHHHHT-----TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred ccccccCCccHHHHHHHHc-----CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 3456789999999999987 567999999999999999999999999999999999999999999999765
No 21
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=98.54 E-value=7.8e-08 Score=69.99 Aligned_cols=70 Identities=19% Similarity=0.216 Sum_probs=57.2
Q ss_pred hhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhcc
Q 048501 67 ELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGE 141 (143)
Q Consensus 67 ~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~ 141 (143)
++-||+..-.||.++- ...+++.+|+++|+++++.|+..+..||+..|-||+|.||+..|+.++.+-.|.
T Consensus 5 d~~lP~a~I~Ri~r~~-----g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~ 74 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHY-----VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGL 74 (111)
T ss_dssp -----CHHHHHHHHHH-----HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHC-----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCC
Confidence 3456776655555544 468999999999999999999999999999999999999999999999886654
No 22
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.51 E-value=2.2e-07 Score=62.55 Aligned_cols=62 Identities=19% Similarity=0.389 Sum_probs=56.1
Q ss_pred hhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHh
Q 048501 77 RLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIR 139 (143)
Q Consensus 77 RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rir 139 (143)
++|..|+.+.+- -+++..++..|-|.+|.|...+..||..+|-||+|.||...||+||...+
T Consensus 5 ~~i~~iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 5 QVIMSILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp HHHHHHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHHCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 567777777654 39999999999999999999999999999999999999999999998765
No 23
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.42 E-value=1.6e-07 Score=66.45 Aligned_cols=65 Identities=22% Similarity=0.138 Sum_probs=55.3
Q ss_pred CccchhHHHHHHhhh--ccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501 73 LPFQRLVREIAQDFK--TDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR 137 (143)
Q Consensus 73 ~pF~RLVrEI~~~~~--~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r 137 (143)
..++--|-.|+++.. .+..++++++.+|-|.++.|+..+-.|+...|-||+|.||.+.|+.|+.|
T Consensus 12 aal~~~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~R 78 (90)
T 3v9r_A 12 ARLWIRVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLR 78 (90)
T ss_dssp HHHHHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 344455666666652 24789999999999999999999999999999999999999999999865
No 24
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.41 E-value=2.7e-07 Score=67.80 Aligned_cols=60 Identities=23% Similarity=0.351 Sum_probs=51.4
Q ss_pred hHHHHHHhhh--ccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501 78 LVREIAQDFK--TDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR 137 (143)
Q Consensus 78 LVrEI~~~~~--~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r 137 (143)
-|-.|+++.. .+..++.+++.+|-|+++.|+..+-.|+...|-||+|.||.+.||.|+.|
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~R 93 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLAR 93 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 3444444432 35779999999999999999999999999999999999999999999865
No 25
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.34 E-value=2.6e-07 Score=67.19 Aligned_cols=64 Identities=25% Similarity=0.322 Sum_probs=54.3
Q ss_pred ccchhHHHHHHhhh--ccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501 74 PFQRLVREIAQDFK--TDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR 137 (143)
Q Consensus 74 pF~RLVrEI~~~~~--~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r 137 (143)
.++--|-.|+++.. .+.+++.+++.+|-|.++.|+..+..|+...|-||+|.||...|+.|+.|
T Consensus 20 al~~~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~R 85 (107)
T 3b0b_B 20 AVHYTTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLAR 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHH
Confidence 33444555555543 35799999999999999999999999999999999999999999999865
No 26
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.32 E-value=5.9e-07 Score=68.14 Aligned_cols=64 Identities=27% Similarity=0.353 Sum_probs=55.3
Q ss_pred ccchhHHHHHHhh--hccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501 74 PFQRLVREIAQDF--KTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR 137 (143)
Q Consensus 74 pF~RLVrEI~~~~--~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r 137 (143)
..+--|-.|+++. ..+..++.+++.+|-|+++.|+..+-.|+...|-||+|.||.+.||.|+.|
T Consensus 20 Al~y~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~R 85 (140)
T 3vh5_A 20 AVHYTTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLAR 85 (140)
T ss_dssp HHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 3444566666665 246889999999999999999999999999999999999999999999975
No 27
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.28 E-value=4.3e-07 Score=69.72 Aligned_cols=67 Identities=9% Similarity=0.080 Sum_probs=60.2
Q ss_pred hccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhc
Q 048501 70 IRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRG 140 (143)
Q Consensus 70 I~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg 140 (143)
+|+.|..|++|+-+ +..|++.+|-++|+++.|.|+..+-.+|+..|.|++|.||++.|+..+..=+|
T Consensus 5 LP~a~V~Riik~~l----g~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg 71 (154)
T 1f1e_A 5 LPKAAIERIFRQGI----GERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLM 71 (154)
T ss_dssp CCHHHHHHHHHTTS----TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHT
T ss_pred CCccHHHHHHHhcC----CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcc
Confidence 67788888887765 45999999999999999999999999999999999999999999999886554
No 28
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=98.27 E-value=1e-07 Score=80.85 Aligned_cols=45 Identities=13% Similarity=0.181 Sum_probs=12.5
Q ss_pred ccccCCCCCCCCCCCCCCCCCcCC-----CCCCCCCCCCCcccCCCCchhhHHH
Q 048501 11 RSRQQGSPPEGRHHVSSWPPRQLG-----NSTSATGGVKKPHCFRPGTVALREI 59 (143)
Q Consensus 11 rtK~ta~k~~~~~~~~kaprk~~~-----ks~p~~~~~k~~~r~rpgt~alrEI 59 (143)
||||||+|++| |++|+|+++ ++.|.++++++||||+||++|+.|-
T Consensus 3 ~tk~tarkstg----gkaprk~~~~k~~rk~~~~~~~~kkp~R~rPGt~a~~e~ 52 (361)
T 2r10_A 3 DPFTTARKSTG----GKAPRKGGMVVKKRKLATEAGGSDERPKYLPGKHPKNQE 52 (361)
T ss_dssp ----------------------------------------CCSSCCSCCBCCCS
T ss_pred cccccccCCCC----CCCCCccccccccCCCCCCCCCCCCCcccCCCccccccc
Confidence 89999999999 999999988 4456677889999999999997765
No 29
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.25 E-value=1.5e-06 Score=58.79 Aligned_cols=59 Identities=20% Similarity=0.285 Sum_probs=50.7
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHH
Q 048501 79 VREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRI 138 (143)
Q Consensus 79 VrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~ri 138 (143)
|+.|+++.+- -+.+.+|..+|-+-+|.++-.+.++|..++.|+||-||+..||.+|.++
T Consensus 12 v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~ 70 (70)
T 1taf_B 12 MKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp HHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred HHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence 4445554443 3789999999999999999999999999999999999999999999763
No 30
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=98.11 E-value=2.9e-06 Score=63.01 Aligned_cols=71 Identities=20% Similarity=0.178 Sum_probs=59.0
Q ss_pred hhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhc
Q 048501 67 ELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRG 140 (143)
Q Consensus 67 ~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg 140 (143)
++.+|..+-.|++++... ...+++.+|..+|++++|.|+..|-..|+..+.|.+|-||...||..|..-.|
T Consensus 7 d~~LP~A~I~rImK~~~p---d~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~ 77 (128)
T 2byk_B 7 DLNLPNAVIGRLIKEALP---ESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELD 77 (128)
T ss_dssp ----CCSHHHHHHHHHSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHhCc---ccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcC
Confidence 566788887777776643 46899999999999999999999999999999999999999999999876543
No 31
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.07 E-value=2.6e-06 Score=66.86 Aligned_cols=74 Identities=14% Similarity=0.241 Sum_probs=64.8
Q ss_pred hhhhhhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhc
Q 048501 63 QKSTELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRG 140 (143)
Q Consensus 63 Qkst~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg 140 (143)
....++.+|+.+..|++++++. +.+++.+|..+|+++++.|+.-|-..||..+.|.+|.||+..||-.|..=.|
T Consensus 9 ~~~eD~~LP~A~V~RImK~alp----~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~Lg 82 (179)
T 1jfi_B 9 GNDDDLTIPRAAINKMIKETLP----NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLG 82 (179)
T ss_dssp ---CCCCCCHHHHHHHHHHHST----TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred CchhhhhcCHHHHHHHHHHhCC----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcC
Confidence 4456788999999999998863 7899999999999999999999999999999999999999999999876433
No 32
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=98.05 E-value=5e-06 Score=60.87 Aligned_cols=70 Identities=17% Similarity=0.253 Sum_probs=62.1
Q ss_pred hhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501 67 ELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR 137 (143)
Q Consensus 67 ~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r 137 (143)
++-.+.+|..| |+.|++.-....+++.+|..+|..++|-|+..|.+.|+.+|...+|.||+++||..|..
T Consensus 36 d~k~~~lPvaR-IkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~ 105 (119)
T 4g92_C 36 DYKIHQLPLAR-IKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALS 105 (119)
T ss_dssp CSSCCSSCHHH-HHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred ccccCCCCHHH-HHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHh
Confidence 34456789988 78888865566799999999999999999999999999999999999999999999864
No 33
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.00 E-value=6.7e-06 Score=58.06 Aligned_cols=81 Identities=22% Similarity=0.315 Sum_probs=56.3
Q ss_pred hhHHHHhhhhhhhhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHH
Q 048501 55 ALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQL 134 (143)
Q Consensus 55 alrEIr~yQkst~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqL 134 (143)
.+.||+..- ..+.--..+|-.|. +.|++.-...-+++.+|..+|..++|.|+..|.+.|+.+|.+.||.||+++||++
T Consensus 3 ~~~~~~~~~-~~~~~~~~lP~arI-krImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~ 80 (97)
T 1n1j_B 3 HMEEIRNLT-VKDFRVQELPLARI-KKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAM 80 (97)
T ss_dssp ------------------CCHHHH-HHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred HHHHHHhcc-cCCcCCCcCCHHHH-HHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHH
Confidence 355666642 22233456777774 6677765444689999999999999999999999999999999999999999999
Q ss_pred HHH
Q 048501 135 ARR 137 (143)
Q Consensus 135 a~r 137 (143)
|.+
T Consensus 81 Av~ 83 (97)
T 1n1j_B 81 AIT 83 (97)
T ss_dssp HHT
T ss_pred HHh
Confidence 864
No 34
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.52 E-value=6e-05 Score=53.33 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=53.1
Q ss_pred ccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501 71 RKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR 137 (143)
Q Consensus 71 ~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r 137 (143)
..+|..|. +.|++.-..--+++.+|.-.|-.+.|.|+..|.+.|+.+|.+.+|-||+++||+++.+
T Consensus 10 ~~fPvaRI-krimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~ 75 (98)
T 1jfi_A 10 ARFPPARI-KKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIE 75 (98)
T ss_dssp CCCCHHHH-HHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC
T ss_pred CCCChHHH-HHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHh
Confidence 35666664 6677754444699999999999999999999999999999999999999999998753
No 35
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.47 E-value=0.00023 Score=48.77 Aligned_cols=65 Identities=23% Similarity=0.313 Sum_probs=57.4
Q ss_pred hhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501 69 LIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR 137 (143)
Q Consensus 69 lI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r 137 (143)
++.|--.+.||++| .+...+..++-++|.+.|++|+.+..+.|-.+|.|.+--||.++|+||...
T Consensus 5 vl~k~~L~~Lv~~i----dp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le 69 (76)
T 1h3o_B 5 VLTKKKLQDLVREV----DPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE 69 (76)
T ss_dssp SSCHHHHHHHHHHH----CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred cccHHHHHHHHHhc----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 44666667777777 467899999999999999999999999999999999999999999999853
No 36
>2x4w_B Histone H3.2; transcription, metal-binding, zinc-finger, chromatin regulator, transcription regulation; HET: M3L; 1.50A {Homo sapiens} PDB: 2x4x_B* 2x4y_B*
Probab=97.27 E-value=9.2e-05 Score=40.13 Aligned_cols=21 Identities=48% Similarity=0.723 Sum_probs=17.1
Q ss_pred CCCCCCCCCCCcccCCCCchh
Q 048501 35 NSTSATGGVKKPHCFRPGTVA 55 (143)
Q Consensus 35 ks~p~~~~~k~~~r~rpgt~a 55 (143)
+++|..+++++++||+||++|
T Consensus 6 k~~p~~~~~kk~~RyRPGtvA 26 (26)
T 2x4w_B 6 KSAPATGGVXKPHRYRXXXXX 26 (26)
T ss_pred cCCCCCCccccccccccccCC
Confidence 345667788899999999986
No 37
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=97.17 E-value=0.00036 Score=52.53 Aligned_cols=66 Identities=12% Similarity=0.099 Sum_probs=50.1
Q ss_pred ccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhh-hccCccccCcccHHHHHH
Q 048501 71 RKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCT-IHTKRVTIMPKDIQLARR 137 (143)
Q Consensus 71 ~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a-~HakRvTi~~kDiqLa~r 137 (143)
..+|-.| |+.|++.-...-.++.+|..++..|+|-|+..|.+.|+.+| .-.+|-||+++||..|..
T Consensus 18 ~~LPlaR-IKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~ 84 (140)
T 2byk_A 18 TFLPLSR-VRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN 84 (140)
T ss_dssp ------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred CCCCHHH-HHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHh
Confidence 4566666 46777755444689999999999999999999999999999 999999999999999875
No 38
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.00045 Score=56.19 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=49.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhcc
Q 048501 90 LWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGE 141 (143)
Q Consensus 90 ~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~ 141 (143)
-|++.+|.+.+.++.|.||..+..||...|-||+|.||++.|+.+|.+-.|.
T Consensus 177 kRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~gr 228 (235)
T 2l5a_A 177 KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 228 (235)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcCC
Confidence 6899999999999999999999999999999999999999999999987764
No 39
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=97.03 E-value=0.001 Score=49.05 Aligned_cols=67 Identities=22% Similarity=0.215 Sum_probs=56.9
Q ss_pred hhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501 67 ELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR 137 (143)
Q Consensus 67 ~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r 137 (143)
+|.+|-.++.|+.++- ..-.|+..+|-..|-.+-|.+...++|.|...|.|+++.+|+|+||++|.+
T Consensus 21 gL~fPV~ri~R~Lk~~----~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 21 GLQFPVGRIHRLLRKG----NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp TCSSCHHHHHHHHHHT----TSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CeeccHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 4666666666666543 223599999999999999999999999999999999999999999999976
No 40
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=97.01 E-value=0.0011 Score=48.72 Aligned_cols=67 Identities=13% Similarity=0.120 Sum_probs=58.0
Q ss_pred hhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501 67 ELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR 137 (143)
Q Consensus 67 ~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r 137 (143)
+|-+|-.++.|+.++- ....|+..+|-..|-.+-|.+...++|.|...|.|+++.+|+|+||++|.+
T Consensus 20 gLqfPV~ri~R~Lk~~----~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 20 GVIFPVGRMLRYIKKG----HPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp TCSSCHHHHHHHHHHH----SSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CccCChHHHHHHHHcC----ccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 5667777777777653 223599999999999999999999999999999999999999999999976
No 41
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=96.96 E-value=0.0012 Score=49.00 Aligned_cols=67 Identities=22% Similarity=0.213 Sum_probs=57.2
Q ss_pred hhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501 67 ELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR 137 (143)
Q Consensus 67 ~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r 137 (143)
+|.+|-.++.|+.++- ..-.|+..+|-..|-.+-|.+...++|.|...|.|+++.+|+|+||+||.+
T Consensus 23 gLqfPV~rI~R~Lk~~----~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 23 GLQFPVGRVHRLLRKG----NYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp TCSSCHHHHHHHHHHT----TSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ceeccHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 4666777777766543 223599999999999999999999999999999999999999999999976
No 42
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=96.83 E-value=0.0012 Score=49.10 Aligned_cols=67 Identities=24% Similarity=0.228 Sum_probs=56.2
Q ss_pred hhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501 67 ELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR 137 (143)
Q Consensus 67 ~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r 137 (143)
+|.+|-.++.|+.++- ..-.|+..+|-..|-.+-|.+...++|.|...|.|+++.+|+|+||+||.+
T Consensus 23 gLqfPV~rI~R~Lk~~----~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 23 GLTFPVGRVHRLLRRG----NYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp TCSSCHHHHHHHHHTT----CSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CeecCHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 4556666666666542 223499999999999999999999999999999999999999999999976
No 43
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=96.82 E-value=0.0015 Score=49.84 Aligned_cols=67 Identities=22% Similarity=0.217 Sum_probs=56.9
Q ss_pred hhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501 67 ELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR 137 (143)
Q Consensus 67 ~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r 137 (143)
+|.+|-.++.|+.++- ..-.|+..+|-..|-.+-|.+...++|.|...|.|+++.+|+|+||+||.+
T Consensus 42 gLqFPVgrI~R~LK~~----~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~ 108 (149)
T 2f8n_K 42 GLQFPVGRVHRLLRKG----NYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 108 (149)
T ss_dssp TCSSCHHHHHHHHHHT----TSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CeeccHHHHHHHHHcc----ccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHh
Confidence 5666776766666543 223489999999999999999999999999999999999999999999976
No 44
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=96.79 E-value=0.0017 Score=48.16 Aligned_cols=68 Identities=18% Similarity=0.119 Sum_probs=56.8
Q ss_pred hhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501 67 ELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR 137 (143)
Q Consensus 67 ~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r 137 (143)
+|.+|-.++.|+.++-. ....|+..+|-..|-.+-|.+...++|.|...|.|+++.+|+|+||+||.+
T Consensus 25 gLqfPV~ri~R~Lk~~~---~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~ 92 (128)
T 1f66_C 25 GLQFPVGRIHRHLKSRT---TSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 92 (128)
T ss_dssp TCSSCHHHHHHHHHHTS---CSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred CccCChHHHHHHHHHcc---cchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 46667666666665431 123589999999999999999999999999999999999999999999975
No 45
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=96.64 E-value=0.00098 Score=52.15 Aligned_cols=68 Identities=22% Similarity=0.164 Sum_probs=56.9
Q ss_pred hhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501 67 ELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR 137 (143)
Q Consensus 67 ~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r 137 (143)
+|.+|-.++.|+.++-. ....|+..+|-..|-.+-|.+...++|.|...|.|+++.+|+|+||++|.+
T Consensus 103 gl~fPv~ri~R~lk~~~---~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~ 170 (192)
T 2jss_A 103 GLQFPVGRIKRYLKRHA---TGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIR 170 (192)
T ss_dssp SCCSCHHHHHHHHHHTT---CSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHhcC---ccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 56666666666665421 123689999999999999999999999999999999999999999999976
No 46
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=90.45 E-value=0.043 Score=42.13 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=11.8
Q ss_pred hccccCCCCCCCCCCCCCCCCCcC
Q 048501 10 ARSRQQGSPPEGRHHVSSWPPRQL 33 (143)
Q Consensus 10 artK~ta~k~~~~~~~~kaprk~~ 33 (143)
|||||+|+|++| +|++.+++
T Consensus 1 ~~~~~~~r~s~~----~K~~~~~~ 20 (159)
T 3a1b_A 1 ARTKQTARKSTG----GKAPRKQL 20 (159)
T ss_dssp CEEEECCCC-----------CHHH
T ss_pred CccccccccccC----CCcchHHH
Confidence 799999999999 99998886
No 47
>3avr_B Histone H3; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
Probab=76.48 E-value=1.4 Score=23.17 Aligned_cols=15 Identities=60% Similarity=0.838 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCcccC
Q 048501 35 NSTSATGGVKKPHCF 49 (143)
Q Consensus 35 ks~p~~~~~k~~~r~ 49 (143)
+++|..++++++||.
T Consensus 11 ks~p~~~g~kk~hR~ 25 (26)
T 3avr_B 11 XSAPATGGVKKPXXX 25 (26)
T ss_pred CCCCCCccccccCCC
Confidence 345667788888874
No 48
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=73.78 E-value=1.5 Score=32.63 Aligned_cols=16 Identities=63% Similarity=1.016 Sum_probs=14.6
Q ss_pred CCCCCCCCCCCcccCC
Q 048501 35 NSTSATGGVKKPHCFR 50 (143)
Q Consensus 35 ks~p~~~~~k~~~r~r 50 (143)
+|+|+++|+|+|||||
T Consensus 121 Ks~p~tgGvkk~hr~r 136 (136)
T 2k3y_A 121 GSAPATGGVXKPHRYR 136 (136)
T ss_dssp CCSTTCTTSCCCSSCC
T ss_pred ccCCCCCCccCCCcCC
Confidence 6889999999999996
No 49
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=59.63 E-value=20 Score=24.39 Aligned_cols=58 Identities=9% Similarity=0.069 Sum_probs=39.7
Q ss_pred chhHHHHHHhh--hccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHH
Q 048501 76 QRLVREIAQDF--KTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQ 133 (143)
Q Consensus 76 ~RLVrEI~~~~--~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiq 133 (143)
..||.+|.+.. +...+++.+|+.++++-.+-|...-+.-|..-|---.-.+|.+.|+.
T Consensus 15 ~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LE 74 (84)
T 4dra_E 15 KELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLE 74 (84)
T ss_dssp HHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHH
T ss_pred HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHH
Confidence 45677777754 26799999999999998888777666555444332334467777764
No 50
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=56.80 E-value=4.5 Score=31.27 Aligned_cols=73 Identities=14% Similarity=0.142 Sum_probs=57.3
Q ss_pred hhhhhhhh--hhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHH
Q 048501 61 KYQKSTEL--LIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRI 138 (143)
Q Consensus 61 ~yQkst~l--lI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~ri 138 (143)
.|.+-.+. +|+-.-|++|.|+-+. +-...+=+.-+-+.+|.-|..||+-|+.-|-...|-.|.+.|+-+...+
T Consensus 16 ~~~~~~~Mm~vmg~~kferlFR~aag-----LDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLPITKGl 90 (171)
T 1r4v_A 16 NYSKIETMLRPKGFDKLDHYFRTELD-----IDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLNITKAL 90 (171)
T ss_dssp -----CCTTSCTTHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGSCCCHHH
T ss_pred cHHHHHHHHhcCChHHHHHHHHHHhc-----cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCccHHH
Confidence 35454555 6777778999988764 5666777888999999999999999999999999999999998765544
No 51
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=56.38 E-value=24 Score=23.76 Aligned_cols=58 Identities=5% Similarity=0.019 Sum_probs=39.1
Q ss_pred chhHHHHHHhh--hccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHH
Q 048501 76 QRLVREIAQDF--KTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQ 133 (143)
Q Consensus 76 ~RLVrEI~~~~--~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiq 133 (143)
..||..|.+.. ....|++++|+.++.+--+-|...-+.-|..-|---.-..|.+.|++
T Consensus 11 ~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LE 70 (81)
T 3b0b_C 11 KETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVE 70 (81)
T ss_dssp HHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred HHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHH
Confidence 35666776664 25789999999999998887777666655554422233456666664
No 52
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=53.55 E-value=6.8 Score=29.58 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=48.9
Q ss_pred CccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHH
Q 048501 73 LPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRI 138 (143)
Q Consensus 73 ~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~ri 138 (143)
.-|+++.|+-+. +-...+=+.-+-+.+|.-|..||+-|+.-|-...|-.|.+.|+-+...+
T Consensus 6 ~~~e~lFR~aa~-----LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLPITkGl 66 (148)
T 1wwi_A 6 AEFERLFRQAAG-----LDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLPIAKGL 66 (148)
T ss_dssp HHHHHHHHHHHC-----CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSCCCHHH
T ss_pred HHHHHHHHHHhc-----cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCccHHH
Confidence 347777777653 4444555677889999999999999999999999999999998765544
No 53
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=44.70 E-value=53 Score=25.64 Aligned_cols=51 Identities=18% Similarity=0.233 Sum_probs=43.5
Q ss_pred ccccchHHHHHHHHHHHH----HHHHHHhhhhhhhhhccCccccCcccHHHHHHH
Q 048501 88 TDLWFQSSAVAALQEAAE----AYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRI 138 (143)
Q Consensus 88 ~~~rfq~~Al~aLQeaaE----a~Lv~lfeda~l~a~HakRvTi~~kDiqLa~ri 138 (143)
.+..|..+++..|-+.++ .++..+++.+...|.-..+.+|+..|++-+...
T Consensus 275 ~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 275 EDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp TTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 457799999999999887 388899999988888889999999999887664
No 54
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=43.44 E-value=35 Score=27.69 Aligned_cols=59 Identities=24% Similarity=0.281 Sum_probs=34.6
Q ss_pred hhhHHHHhhhhhhhhhhccCcc------------------chhHHHHHHhhh--ccccchHHHHHHHHHHHHHHHHHHh
Q 048501 54 VALREIRKYQKSTELLIRKLPF------------------QRLVREIAQDFK--TDLWFQSSAVAALQEAAEAYLVGLF 112 (143)
Q Consensus 54 ~alrEIr~yQkst~llI~k~pF------------------~RLVrEI~~~~~--~~~rfq~~Al~aLQeaaEa~Lv~lf 112 (143)
.+.|+|-.+-|.+-+++.+.-+ ..++.+|+..+. ..++|...--.+|||.+|++.-.-|
T Consensus 58 k~sRdIt~~SK~~If~LhR~~~~~~~~~il~ea~~~L~~i~~~~~~La~~l~~~~~yry~~~~s~~lQEyVEA~sf~~y 136 (290)
T 3qb5_K 58 KLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHF 136 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSTTTGGGTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666555555543 223333333332 3467776555799999999755444
No 55
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=35.80 E-value=77 Score=24.35 Aligned_cols=51 Identities=6% Similarity=-0.022 Sum_probs=41.2
Q ss_pred ccccchHHHHHHHHHHHHH-------HHHHHhhhhhhhhhccCccccCcccHHHHHHH
Q 048501 88 TDLWFQSSAVAALQEAAEA-------YLVGLFEDTNLCTIHTKRVTIMPKDIQLARRI 138 (143)
Q Consensus 88 ~~~rfq~~Al~aLQeaaEa-------~Lv~lfeda~l~a~HakRvTi~~kDiqLa~ri 138 (143)
.++.|+.+++..|.+.+.. .+..+.+.+...|.-..+-+|++.|+.-+..+
T Consensus 264 ~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 264 PKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATM 321 (350)
T ss_dssp GGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 3568999999999888764 57788888888888788889999999877654
No 56
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=32.94 E-value=93 Score=26.95 Aligned_cols=50 Identities=16% Similarity=0.154 Sum_probs=41.0
Q ss_pred cccchHHHHHHHHHHH-------------HHHHHHHhhhhhhhhhccCccccCcccHHHHHHH
Q 048501 89 DLWFQSSAVAALQEAA-------------EAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRI 138 (143)
Q Consensus 89 ~~rfq~~Al~aLQeaa-------------Ea~Lv~lfeda~l~a~HakRvTi~~kDiqLa~ri 138 (143)
...|+.+|+..|.+.+ ...|.++.+.|...|.-..+-.|+..|++-|...
T Consensus 312 ~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 312 IPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp SCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 3579999999988754 5678889999988888888889999999888654
No 57
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=28.76 E-value=85 Score=29.57 Aligned_cols=63 Identities=11% Similarity=0.103 Sum_probs=48.5
Q ss_pred CccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501 73 LPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR 137 (143)
Q Consensus 73 ~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r 137 (143)
.|-.|+=|-+ . -....|+.++|---|--+-|.....++|-|.-.|...++..|.|+|+++|.+
T Consensus 105 ~pv~~~~~~l-~-~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~ 167 (1049)
T 3ksy_A 105 LPVEKIHPLL-K-EVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMC 167 (1049)
T ss_dssp SCHHHHHHHH-H-HHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHH
T ss_pred ccHHHHHHHh-h-cccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCcccccccc
Confidence 4444544444 2 2223588888887788888888889999999999999999999999999975
No 58
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C
Probab=27.76 E-value=1.3e+02 Score=24.30 Aligned_cols=59 Identities=25% Similarity=0.252 Sum_probs=34.4
Q ss_pred hhhHHHHhhhhhhhhhhccCcc--c------------------hhHHHHHHhhh--ccccchHHHHHHHHHHHHHHHHHH
Q 048501 54 VALREIRKYQKSTELLIRKLPF--Q------------------RLVREIAQDFK--TDLWFQSSAVAALQEAAEAYLVGL 111 (143)
Q Consensus 54 ~alrEIr~yQkst~llI~k~pF--~------------------RLVrEI~~~~~--~~~rfq~~Al~aLQeaaEa~Lv~l 111 (143)
...|+|-.+-+.+-+++.+.-+ . .++++|+..+. ..++|...-=.+|||.+|++.-.-
T Consensus 53 kisRdIt~~Sk~~If~Lhr~~~~~~~~~~~l~eA~~~l~~i~~~~~~~la~~l~~~~~y~y~~~~s~~lQE~VEA~~f~~ 132 (298)
T 3axj_B 53 KLSRDITIESKRIIFLLHSIDSRKQNKEKVLEEARQRLNKLIAVNFRAVALELRDQDVYQFRSSYSPGLQEFIQAYTYME 132 (298)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSCGGGHHHHHHHHHHHHHHHHHTHHHHHHHHTTTSCTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHhccCHHHHHHHHHHHHHH
Confidence 4556666666666666666654 1 11233343443 235674444479999999965554
Q ss_pred h
Q 048501 112 F 112 (143)
Q Consensus 112 f 112 (143)
|
T Consensus 133 y 133 (298)
T 3axj_B 133 Y 133 (298)
T ss_dssp H
T ss_pred H
Confidence 4
No 59
>1eoq_A GAG polyprotein capsid protein P27; virus/viral protein; NMR {Rous sarcoma virus - prague C} SCOP: a.28.3.1
Probab=26.10 E-value=30 Score=24.30 Aligned_cols=17 Identities=6% Similarity=0.184 Sum_probs=13.5
Q ss_pred ccCccchhHHHHHHhhh
Q 048501 71 RKLPFQRLVREIAQDFK 87 (143)
Q Consensus 71 ~k~pF~RLVrEI~~~~~ 87 (143)
||.||..+|......+.
T Consensus 7 PkEPFrDyVdRf~kalr 23 (96)
T 1eoq_A 7 PSESFVDFANRLIKAVE 23 (96)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 79999999988766443
No 60
>1kn1_B Allophycocyanin; helix-turn-helix, electron transport; HET: CYC; 2.20A {Porphyra yezoensis} SCOP: a.1.1.3 PDB: 1all_B* 3dbj_B* 2v8a_B* 1b33_B* 2vjt_B*
Probab=24.76 E-value=75 Score=23.49 Aligned_cols=58 Identities=12% Similarity=0.196 Sum_probs=39.9
Q ss_pred chhhHHHHhhhhhh--hhhhccCcc-----chhHHHHHHhhhccccchHHHHHHHHHHHHHHHHH
Q 048501 53 TVALREIRKYQKST--ELLIRKLPF-----QRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVG 110 (143)
Q Consensus 53 t~alrEIr~yQkst--~llI~k~pF-----~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~ 110 (143)
..++|.+-.|=+-. .++.--..+ -.=++||...+..+.-+...+|..|++++..+|..
T Consensus 79 ~~ClRD~~~~LR~itYa~lagd~~~L~e~~L~glreiy~algvp~~~~~~~~~~mk~~~~~~l~~ 143 (161)
T 1kn1_B 79 AACIRDLDYYLRYATYAMLAGDPSILDERVLNGLKETYNSLGVPIGATIQAIQAMKEVTSGLVGP 143 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTHHHHHHTSTTHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCH
Confidence 46788888776632 222222221 12358888888888889999999999999887765
No 61
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=22.58 E-value=52 Score=20.55 Aligned_cols=31 Identities=16% Similarity=0.418 Sum_probs=23.4
Q ss_pred HHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501 107 YLVGLFEDTNLCTIHTKRVTIMPKDIQLARR 137 (143)
Q Consensus 107 ~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r 137 (143)
=|..+..+|.+.|+...+..|+..|+.-|..
T Consensus 41 Di~~l~~eA~~~a~~~~~~~i~~~d~~~Al~ 71 (78)
T 3kw6_A 41 EVKGVCTEAGMYALRERRVHVTQEDFEMAVA 71 (78)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 3556667777777777888999999987753
No 62
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=22.25 E-value=55 Score=21.80 Aligned_cols=51 Identities=20% Similarity=0.256 Sum_probs=37.6
Q ss_pred hccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 048501 70 IRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIH 121 (143)
Q Consensus 70 I~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~H 121 (143)
+...|.|+=+.||+..++- --+.+++...+--|+|..|-+|+|.-...|-|
T Consensus 3 L~~~~Lqkri~~I~~k~gl-~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~ 53 (75)
T 1h3o_A 3 LLQAPLQRRILEIGKKHGI-TELHPDVVSYVSHATQQRLQNLVEKISETAQQ 53 (75)
T ss_dssp SCHHHHHHHHHHHHHTTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cccHHHHHHHHHHHHhcCC-CcCChhHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 3556778888899886531 24678999999999999999999987776666
No 63
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=20.72 E-value=64 Score=22.47 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=28.6
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHH
Q 048501 88 TDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLA 135 (143)
Q Consensus 88 ~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa 135 (143)
.+..|..+++..|.+.++-..-.+..-...+...+.. +|+..|++-+
T Consensus 201 ~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~~-~i~~~~v~~~ 247 (250)
T 1njg_A 201 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG-QVSTQAVSAM 247 (250)
T ss_dssp TTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTTS-SBCHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCc-eecHHHHHHH
Confidence 3567888888888887765433333333333444443 7888887655
No 64
>2vml_A Phycocyanin alpha chain; photosynthesis, light-harvesting, electron transport, transp chromophore, bIle pigment, phycobilisome; HET: CYC; 2.40A {Gloeobacter violaceus} PDB: 2vjr_A*
Probab=20.59 E-value=74 Score=23.54 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=37.9
Q ss_pred chhhHHHHhhhhhh--hhhhccCcc-----chhHHHHHHhhhccccchHHHHHHHHHHHHHHHHH
Q 048501 53 TVALREIRKYQKST--ELLIRKLPF-----QRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVG 110 (143)
Q Consensus 53 t~alrEIr~yQkst--~llI~k~pF-----~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~ 110 (143)
..++|.+-.|=+-. .++.--..+ -.=++||...+..+.-+...|+..|++++..+|..
T Consensus 80 ~~ClRD~~~~LRyitYa~lagd~~~L~e~~L~glreiy~algvp~~~~~~a~~~mk~~~~~~l~~ 144 (162)
T 2vml_A 80 AKCARDISHYLRFITYSLVAGGTGPLDDYIVAGLREVNRTFNLSPSWYIEALKHIKGKVGSQLSG 144 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSHHHHHHTTTTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHcCH
Confidence 46778887776532 222222222 12358888888777778888999999988877655
Done!