Query 048503
Match_columns 374
No_of_seqs 125 out of 1180
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 10:04:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 1.6E-60 3.4E-65 466.2 38.2 362 1-373 31-430 (431)
2 PTZ00165 aspartyl protease; Pr 100.0 1.2E-54 2.7E-59 427.0 31.5 306 23-373 109-450 (482)
3 cd05478 pepsin_A Pepsin A, asp 100.0 2E-54 4.4E-59 409.5 30.8 297 25-368 1-317 (317)
4 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.2E-53 2.5E-58 405.6 31.0 298 33-372 2-326 (326)
5 cd05490 Cathepsin_D2 Cathepsin 100.0 2.5E-53 5.4E-58 403.5 31.6 296 29-368 1-325 (325)
6 cd05486 Cathespin_E Cathepsin 100.0 1.9E-53 4E-58 402.8 28.3 289 35-368 1-316 (316)
7 cd05487 renin_like Renin stimu 100.0 4E-53 8.7E-58 402.0 29.6 295 28-369 2-326 (326)
8 cd05477 gastricsin Gastricsins 100.0 1.3E-52 2.8E-57 397.4 31.9 293 32-369 1-318 (318)
9 cd06098 phytepsin Phytepsin, a 100.0 1.2E-52 2.7E-57 397.1 30.6 288 26-368 2-317 (317)
10 cd05488 Proteinase_A_fungi Fun 100.0 1.8E-52 3.9E-57 396.6 30.6 296 26-368 2-320 (320)
11 cd05485 Cathepsin_D_like Cathe 100.0 1.2E-51 2.6E-56 392.2 30.4 299 25-368 2-329 (329)
12 PTZ00147 plasmepsin-1; Provisi 100.0 9.7E-52 2.1E-56 403.6 29.9 300 23-370 128-450 (453)
13 KOG1339 Aspartyl protease [Pos 100.0 5.9E-51 1.3E-55 396.4 33.1 334 24-372 36-397 (398)
14 cd05472 cnd41_like Chloroplast 100.0 9.2E-51 2E-55 381.6 31.3 281 34-371 1-299 (299)
15 PTZ00013 plasmepsin 4 (PM4); P 100.0 8.3E-51 1.8E-55 396.3 31.0 300 23-370 127-449 (450)
16 cd05473 beta_secretase_like Be 100.0 2.5E-48 5.5E-53 374.5 30.5 304 33-373 2-349 (364)
17 cd05475 nucellin_like Nucellin 100.0 1.3E-47 2.7E-52 355.4 29.9 255 33-371 1-273 (273)
18 cd06097 Aspergillopepsin_like 100.0 5.2E-48 1.1E-52 359.1 26.2 262 35-368 1-278 (278)
19 PF00026 Asp: Eukaryotic aspar 100.0 8.3E-49 1.8E-53 370.9 18.7 291 34-369 1-317 (317)
20 cd05476 pepsin_A_like_plant Ch 100.0 7.3E-47 1.6E-51 349.0 27.7 243 34-371 1-265 (265)
21 cd05489 xylanase_inhibitor_I_l 100.0 1.8E-45 3.8E-50 352.6 31.4 306 41-369 2-361 (362)
22 cd05474 SAP_like SAPs, pepsin- 100.0 6.9E-46 1.5E-50 347.8 25.1 262 33-369 1-295 (295)
23 cd05471 pepsin_like Pepsin-lik 100.0 6.9E-43 1.5E-47 325.0 27.7 262 35-368 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 99.9 7.4E-27 1.6E-31 199.5 13.5 156 35-207 1-164 (164)
25 cd05470 pepsin_retropepsin_lik 99.9 6E-22 1.3E-26 157.8 12.8 107 37-172 1-109 (109)
26 PF14541 TAXi_C: Xylanase inhi 99.9 1.1E-21 2.3E-26 167.4 13.4 141 224-368 1-161 (161)
27 cd05483 retropepsin_like_bacte 98.2 6.6E-06 1.4E-10 63.1 7.2 94 33-174 1-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 97.4 0.0014 3.1E-08 52.7 8.9 99 28-174 5-103 (121)
29 PF13650 Asp_protease_2: Aspar 97.0 0.0054 1.2E-07 46.0 8.6 89 37-173 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 95.7 0.04 8.6E-07 44.5 6.9 100 232-366 21-124 (124)
31 cd05479 RP_DDI RP_DDI; retrope 95.5 0.14 3E-06 41.3 9.4 37 28-66 10-46 (124)
32 PF11925 DUF3443: Protein of u 95.5 0.1 2.2E-06 49.3 9.6 109 34-176 23-150 (370)
33 PF08284 RVP_2: Retroviral asp 94.5 0.057 1.2E-06 44.3 4.3 98 246-368 32-131 (135)
34 cd05484 retropepsin_like_LTR_2 93.7 0.078 1.7E-06 40.1 3.4 30 35-66 1-30 (91)
35 COG3577 Predicted aspartyl pro 92.8 0.23 5E-06 43.1 5.2 88 27-155 98-185 (215)
36 cd06095 RP_RTVL_H_like Retrope 92.5 0.86 1.9E-05 34.0 7.6 27 38-66 2-28 (86)
37 PF13975 gag-asp_proteas: gag- 91.7 0.31 6.7E-06 35.2 4.2 36 30-67 4-39 (72)
38 TIGR03698 clan_AA_DTGF clan AA 89.3 2 4.3E-05 33.6 7.1 24 341-364 84-107 (107)
39 PF00077 RVP: Retroviral aspar 86.0 1.1 2.4E-05 34.2 3.9 28 36-65 7-34 (100)
40 PF12384 Peptidase_A2B: Ty3 tr 84.5 3.3 7.2E-05 34.8 6.1 25 244-268 43-67 (177)
41 PF13650 Asp_protease_2: Aspar 83.4 2 4.3E-05 31.7 4.2 29 232-268 3-31 (90)
42 cd05484 retropepsin_like_LTR_2 80.4 3.3 7.2E-05 31.0 4.5 30 231-268 4-33 (91)
43 TIGR02281 clan_AA_DTGA clan AA 79.9 3.1 6.7E-05 33.3 4.3 30 231-268 15-44 (121)
44 cd05483 retropepsin_like_bacte 76.1 5.9 0.00013 29.4 4.8 30 231-268 6-35 (96)
45 cd06095 RP_RTVL_H_like Retrope 76.0 4.5 9.7E-05 30.1 4.0 29 232-268 3-31 (86)
46 PF13975 gag-asp_proteas: gag- 74.3 6.8 0.00015 28.0 4.4 29 232-268 13-41 (72)
47 cd05482 HIV_retropepsin_like R 73.6 4.5 9.8E-05 30.4 3.4 25 38-64 2-26 (87)
48 PF02160 Peptidase_A3: Caulifl 70.8 13 0.00028 32.5 6.0 52 303-368 66-117 (201)
49 cd05481 retropepsin_like_LTR_1 61.9 12 0.00025 28.4 3.6 22 247-268 11-32 (93)
50 PF12384 Peptidase_A2B: Ty3 tr 61.6 11 0.00024 31.7 3.6 29 36-64 34-62 (177)
51 PF09668 Asp_protease: Asparty 57.4 18 0.00039 29.1 4.1 38 25-64 15-52 (124)
52 cd06094 RP_Saci_like RP_Saci_l 56.3 40 0.00086 25.4 5.5 23 244-266 7-29 (89)
53 PF00077 RVP: Retroviral aspar 55.2 14 0.00031 27.9 3.2 26 231-264 9-34 (100)
54 TIGR03698 clan_AA_DTGF clan AA 50.8 21 0.00045 27.8 3.5 29 36-64 1-34 (107)
55 PF09668 Asp_protease: Asparty 48.1 24 0.00051 28.4 3.4 30 231-268 28-57 (124)
56 COG5550 Predicted aspartyl pro 44.2 18 0.00038 29.0 2.1 20 249-268 29-49 (125)
57 COG3577 Predicted aspartyl pro 43.3 43 0.00093 29.4 4.4 30 231-268 109-138 (215)
58 cd05481 retropepsin_like_LTR_1 40.8 23 0.00049 26.8 2.2 24 39-64 3-27 (93)
59 PF08284 RVP_2: Retroviral asp 30.3 62 0.0013 26.3 3.3 31 32-64 19-49 (135)
60 cd05475 nucellin_like Nucellin 25.5 99 0.0021 28.2 4.2 32 33-64 157-194 (273)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.6e-60 Score=466.24 Aligned_cols=362 Identities=53% Similarity=0.933 Sum_probs=299.4
Q ss_pred CCCCCCCCCCCCCCCCCccccc--------------------cccceeeeeCceEEEEEEecCCCceEEEEEEcCCCcee
Q 048503 1 AQNSQKLPFYNDNETPKSPISI--------------------IYQAEIISVDDIYLMHLSIGTPPVDIFGSVDTGSDCTW 60 (374)
Q Consensus 1 ~~~~~~~p~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~y~~~v~iGtP~Q~~~~~iDTgS~~tw 60 (374)
||+++++|++.+..+..+++++ .....+..++++|+++|.||||+|++.|++||||+++|
T Consensus 31 h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~W 110 (431)
T PLN03146 31 HRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDASPNDPQSDLISNGGEYLMNISIGTPPVPILAIADTGSDLIW 110 (431)
T ss_pred eCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhccccCCccccCcccCCccEEEEEEcCCCCceEEEEECCCCCcce
Confidence 8999999988665444433332 11223445678999999999999999999999999999
Q ss_pred EeCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCcCCCCC--CCC-CCCCCeeeeEeCCCCCceeeEEEEEEEEEEEec
Q 048503 61 TQCEPCPELDCFKQEPPLFDPKKSSTYNSISCSSSQCAVVT--SNC-SEGDCSYSFLYGRGAYASFSSGNLATETLTFNS 137 (374)
Q Consensus 61 v~~~~c~~~~C~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~--~~c-~~~~~~~~~~y~~g~~~~~~~G~~~~D~v~i~~ 137 (374)
|+|.+|. .|..+.++.|||++|+|++...|.++.|.... ..| .++.|.|.+.|++| +.+.|.+++|+|.|++
T Consensus 111 v~C~~C~--~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~~~c~y~i~Ygdg---s~~~G~l~~Dtltlg~ 185 (431)
T PLN03146 111 TQCKPCD--DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENTCTYSYSYGDG---SFTKGNLAVETLTIGS 185 (431)
T ss_pred EcCCCCc--ccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCCCCCeeEEEeCCC---CceeeEEEEEEEEecc
Confidence 9999998 89767788999999999999999999997655 237 44579999999999 8778999999999988
Q ss_pred CCCCceecCcEEEeeeecCCCCCCCCCCcceEeecCCCCChhhhhhhccccCcceecccCC-----CcceEEEcC--CCC
Q 048503 138 TSGLPVEMPNVIFGCGHKNLASPTSDSKQTGIIGLGPGNSSLISQMGTSIAGKFSYCLPDQ-----GSSKINFGG--IVA 210 (374)
Q Consensus 138 ~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~~~~~Fs~~l~~~-----~~G~l~~Gg--~~~ 210 (374)
..++.+.++++.|||+....+ .|....+||||||+...++++|++....++||+||.+. ..|.|+||+ .+.
T Consensus 186 ~~~~~~~v~~~~FGc~~~~~g--~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~ 263 (431)
T PLN03146 186 TSGRPVSFPGIVFGCGHNNGG--TFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCLVPLSSDSNGTSKINFGTNAIVS 263 (431)
T ss_pred CCCCcceeCCEEEeCCCCCCC--CccCCCceeEecCCCCccHHHHhhHhhCCcEEEECCCCCCCCCCcceEEeCCccccC
Confidence 655556789999999998776 56446899999999999999999876667999999642 379999999 444
Q ss_pred CCCeeeeeeeeC---CceeEEEeEEEECCEEEEeeeC-----CCCcEEEecCcceeecChHHHHHHHHHHHhhhccCccc
Q 048503 211 GAGVVSTPLIIR---DHYYLSLEAISVGNQRLEFVSS-----STGNIFVDTGVLRTLLPLEYHSNLKSVMSNMIKAQPVK 282 (374)
Q Consensus 211 ~~~l~~~p~~~~---~~w~v~l~~i~v~~~~~~~~~~-----~~~~~iiDTGt~~i~lp~~~~~~i~~~l~~~~~~~~~~ 282 (374)
+..+.|+|++.. .+|.|.+++|+||++.+..+.. ....++|||||++++||+++|++|.+++.++++.....
T Consensus 264 ~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~ 343 (431)
T PLN03146 264 GSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVS 343 (431)
T ss_pred CCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCC
Confidence 446899999853 4899999999999998765311 12479999999999999999999999999888643332
Q ss_pred CCCCCCCccccceeeccCCCCCCeEEEEEeCceEEECCCceEEEeCCCeEEEEEEcCCCceeecccceeeeEEEEECCCC
Q 048503 283 GVGAEPGFSDVLCYNISSQPKFPEVTIHFRGADVKLSPSNLFRNISDEIMCSAFRGGNANIVYGRIMQINFLIGYDIEQA 362 (374)
Q Consensus 283 ~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~i~~~~y~~~~~~~~~C~~i~~~~~~~iLG~~fl~~~y~vfD~e~~ 362 (374)
. ......+|+.......+|.|+|+|+|.++.|+|++|++...++..|+++......||||..|||++|++||.+++
T Consensus 344 ~----~~~~~~~C~~~~~~~~~P~i~~~F~Ga~~~l~~~~~~~~~~~~~~Cl~~~~~~~~~IlG~~~q~~~~vvyDl~~~ 419 (431)
T PLN03146 344 D----PQGLLSLCYSSTSDIKLPIITAHFTGADVKLQPLNTFVKVSEDLVCFAMIPTSSIAIFGNLAQMNFLVGYDLESK 419 (431)
T ss_pred C----CCCCCCccccCCCCCCCCeEEEEECCCeeecCcceeEEEcCCCcEEEEEecCCCceEECeeeEeeEEEEEECCCC
Confidence 2 222367899754334789999999999999999999998877788999877667899999999999999999999
Q ss_pred EEEEeeCCCCC
Q 048503 363 MVSFKPSRCTN 373 (374)
Q Consensus 363 rigfa~~~C~~ 373 (374)
|||||+.+|..
T Consensus 420 ~igFa~~~C~~ 430 (431)
T PLN03146 420 TVSFKPTDCTK 430 (431)
T ss_pred EEeeecCCcCc
Confidence 99999999986
No 2
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.2e-54 Score=427.02 Aligned_cols=306 Identities=20% Similarity=0.346 Sum_probs=253.9
Q ss_pred cccceeeeeCceEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCcCCCCCC
Q 048503 23 IYQAEIISVDDIYLMHLSIGTPPVDIFGSVDTGSDCTWTQCEPCPELDCFKQEPPLFDPKKSSTYNSISCSSSQCAVVTS 102 (374)
Q Consensus 23 ~~~~~~~~~~~~y~~~v~iGtP~Q~~~~~iDTgS~~twv~~~~c~~~~C~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~ 102 (374)
..++..++.+.+|+++|+||||||+|.|+|||||+++||++..|...+| ..++.||+++|+|++...+...
T Consensus 109 ~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C--~~~~~yd~s~SSTy~~~~~~~~------- 179 (482)
T PTZ00165 109 LQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGC--APHRKFDPKKSSTYTKLKLGDE------- 179 (482)
T ss_pred cceecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccc--cccCCCCccccCCcEecCCCCc-------
Confidence 4588899999999999999999999999999999999999999987789 6788999999999998321100
Q ss_pred CCCCCCCeeeeEeCCCCCceeeEEEEEEEEEEEecCCCCceecCcEEEeeeecCCCCCCC-CCCcceEeecCCCCCh---
Q 048503 103 NCSEGDCSYSFLYGRGAYASFSSGNLATETLTFNSTSGLPVEMPNVIFGCGHKNLASPTS-DSKQTGIIGLGPGNSS--- 178 (374)
Q Consensus 103 ~c~~~~~~~~~~y~~g~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~~~-~~~~~GilGLg~~~~s--- 178 (374)
...+.+.|++| +.. |.++.|+|++++ +.++++.||++...... .| ...+|||||||+...+
T Consensus 180 -----~~~~~i~YGsG---s~~-G~l~~DtV~ig~-----l~i~~q~FG~a~~~s~~-~f~~~~~DGILGLg~~~~s~~s 244 (482)
T PTZ00165 180 -----SAETYIQYGTG---ECV-LALGKDTVKIGG-----LKVKHQSIGLAIEESLH-PFADLPFDGLVGLGFPDKDFKE 244 (482)
T ss_pred -----cceEEEEeCCC---cEE-EEEEEEEEEECC-----EEEccEEEEEEEecccc-ccccccccceeecCCCcccccc
Confidence 02577899999 765 999999999999 99999999999987653 45 6689999999998642
Q ss_pred ------hhhhhh---ccccCcceecccCC--CcceEEEcCC----C-CCCCeeeeeeeeCCceeEEEeEEEECCEEEEee
Q 048503 179 ------LISQMG---TSIAGKFSYCLPDQ--GSSKINFGGI----V-AGAGVVSTPLIIRDHYYLSLEAISVGNQRLEFV 242 (374)
Q Consensus 179 ------~~~ql~---~~~~~~Fs~~l~~~--~~G~l~~Gg~----~-~~~~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~ 242 (374)
+..++. .+..++||+||.+. ..|.|+|||. + .++++.|+|++...+|.|.+++|+|+++.+...
T Consensus 245 ~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~~yW~i~l~~i~vgg~~~~~~ 324 (482)
T PTZ00165 245 SKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVISTDYWEIEVVDILIDGKSLGFC 324 (482)
T ss_pred cCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEccccceEEEEeCeEEECCEEeeec
Confidence 344444 34679999999764 5699999992 2 245799999999899999999999999877541
Q ss_pred eCCCCcEEEecCcceeecChHHHHHHHHHHHhhhccCcccCCCCCCCccccceeeccCCCCCCeEEEEEeCc-----eEE
Q 048503 243 SSSTGNIFVDTGVLRTLLPLEYHSNLKSVMSNMIKAQPVKGVGAEPGFSDVLCYNISSQPKFPEVTIHFRGA-----DVK 317 (374)
Q Consensus 243 ~~~~~~~iiDTGt~~i~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~-----~~~ 317 (374)
.....+++||||+++++|.+++++|.+++.. ..+|+..+ .+|+|+|+|+|. ++.
T Consensus 325 -~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~-----------------~~~C~~~~---~lP~itf~f~g~~g~~v~~~ 383 (482)
T PTZ00165 325 -DRKCKAAIDTGSSLITGPSSVINPLLEKIPL-----------------EEDCSNKD---SLPRISFVLEDVNGRKIKFD 383 (482)
T ss_pred -CCceEEEEcCCCccEeCCHHHHHHHHHHcCC-----------------cccccccc---cCCceEEEECCCCCceEEEE
Confidence 3567899999999999999999988776531 23798765 799999999864 899
Q ss_pred ECCCceEEEe----CCCeEEEE-EEcC------CCceeecccceeeeEEEEECCCCEEEEeeCCCCC
Q 048503 318 LSPSNLFRNI----SDEIMCSA-FRGG------NANIVYGRIMQINFLIGYDIEQAMVSFKPSRCTN 373 (374)
Q Consensus 318 i~~~~y~~~~----~~~~~C~~-i~~~------~~~~iLG~~fl~~~y~vfD~e~~rigfa~~~C~~ 373 (374)
|+|++|+.+. .++..|+. +... ++.||||.+|||++|+|||.+++|||||+++|..
T Consensus 384 l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~ 450 (482)
T PTZ00165 384 MDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQ 450 (482)
T ss_pred EchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCC
Confidence 9999999874 23568976 7753 2579999999999999999999999999999863
No 3
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=2e-54 Score=409.48 Aligned_cols=297 Identities=25% Similarity=0.396 Sum_probs=253.8
Q ss_pred cceeeeeCceEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCcCCCCCCCC
Q 048503 25 QAEIISVDDIYLMHLSIGTPPVDIFGSVDTGSDCTWTQCEPCPELDCFKQEPPLFDPKKSSTYNSISCSSSQCAVVTSNC 104 (374)
Q Consensus 25 ~~~~~~~~~~y~~~v~iGtP~Q~~~~~iDTgS~~twv~~~~c~~~~C~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~c 104 (374)
+|+.++.+..|+++|.||||+|++.|+|||||+++||++..|....| ..++.|||++|+|++...
T Consensus 1 ~~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c--~~~~~f~~~~Sst~~~~~------------- 65 (317)
T cd05478 1 EPLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQAC--SNHNRFNPRQSSTYQSTG------------- 65 (317)
T ss_pred CccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccc--cccCcCCCCCCcceeeCC-------------
Confidence 46678889999999999999999999999999999999999986678 567899999999999876
Q ss_pred CCCCCeeeeEeCCCCCceeeEEEEEEEEEEEecCCCCceecCcEEEeeeecCCCCCCC--CCCcceEeecCCCCCh----
Q 048503 105 SEGDCSYSFLYGRGAYASFSSGNLATETLTFNSTSGLPVEMPNVIFGCGHKNLASPTS--DSKQTGIIGLGPGNSS---- 178 (374)
Q Consensus 105 ~~~~~~~~~~y~~g~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~~~--~~~~~GilGLg~~~~s---- 178 (374)
+.+.+.|++| + +.|.+++|+|++++ +.++++.||++..... .+ ....+||||||+...+
T Consensus 66 ----~~~~~~yg~g---s-~~G~~~~D~v~ig~-----~~i~~~~fg~~~~~~~--~~~~~~~~dGilGLg~~~~s~~~~ 130 (317)
T cd05478 66 ----QPLSIQYGTG---S-MTGILGYDTVQVGG-----ISDTNQIFGLSETEPG--SFFYYAPFDGILGLAYPSIASSGA 130 (317)
T ss_pred ----cEEEEEECCc---e-EEEEEeeeEEEECC-----EEECCEEEEEEEecCc--cccccccccceeeeccchhcccCC
Confidence 8999999999 7 46999999999998 8999999999987765 33 3468999999987543
Q ss_pred --hhhhhhcc---ccCcceecccCC--CcceEEEcC----CCCCCCeeeeeeeeCCceeEEEeEEEECCEEEEeeeCCCC
Q 048503 179 --LISQMGTS---IAGKFSYCLPDQ--GSSKINFGG----IVAGAGVVSTPLIIRDHYYLSLEAISVGNQRLEFVSSSTG 247 (374)
Q Consensus 179 --~~~ql~~~---~~~~Fs~~l~~~--~~G~l~~Gg----~~~~~~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~ 247 (374)
++.+|... .+++||+||.+. ..|.|+||| ++.+ ++.|+|+....+|.|.+++|+|+++.+.. ....
T Consensus 131 ~~~~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g-~l~~~p~~~~~~w~v~l~~v~v~g~~~~~--~~~~ 207 (317)
T cd05478 131 TPVFDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTG-SLNWVPVTAETYWQITVDSVTINGQVVAC--SGGC 207 (317)
T ss_pred CCHHHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccC-ceEEEECCCCcEEEEEeeEEEECCEEEcc--CCCC
Confidence 55555544 569999999876 368999999 3455 89999998888999999999999998764 4567
Q ss_pred cEEEecCcceeecChHHHHHHHHHHHhhhccCcccCCCCCCCccccceeeccCCCCCCeEEEEEeCceEEECCCceEEEe
Q 048503 248 NIFVDTGVLRTLLPLEYHSNLKSVMSNMIKAQPVKGVGAEPGFSDVLCYNISSQPKFPEVTIHFRGADVKLSPSNLFRNI 327 (374)
Q Consensus 248 ~~iiDTGt~~i~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~i~~~~y~~~~ 327 (374)
.++|||||+++++|++++++|++++... .... +. +.++|+... .+|.|+|+|+|.+++|||++|+...
T Consensus 208 ~~iiDTGts~~~lp~~~~~~l~~~~~~~----~~~~----~~-~~~~C~~~~---~~P~~~f~f~g~~~~i~~~~y~~~~ 275 (317)
T cd05478 208 QAIVDTGTSLLVGPSSDIANIQSDIGAS----QNQN----GE-MVVNCSSIS---SMPDVVFTINGVQYPLPPSAYILQD 275 (317)
T ss_pred EEEECCCchhhhCCHHHHHHHHHHhCCc----cccC----Cc-EEeCCcCcc---cCCcEEEEECCEEEEECHHHheecC
Confidence 8999999999999999999998877432 1112 23 378999765 7899999999999999999998765
Q ss_pred CCCeEEEE-EEcCC--CceeecccceeeeEEEEECCCCEEEEee
Q 048503 328 SDEIMCSA-FRGGN--ANIVYGRIMQINFLIGYDIEQAMVSFKP 368 (374)
Q Consensus 328 ~~~~~C~~-i~~~~--~~~iLG~~fl~~~y~vfD~e~~rigfa~ 368 (374)
...|++ |+..+ +.||||.+|||++|+|||++++||||||
T Consensus 276 --~~~C~~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 276 --QGSCTSGFQSMGLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred --CCEEeEEEEeCCCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 468987 77654 6899999999999999999999999996
No 4
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.2e-53 Score=405.62 Aligned_cols=298 Identities=24% Similarity=0.419 Sum_probs=247.7
Q ss_pred ceEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCcCCCCCCCCCCCCCeee
Q 048503 33 DIYLMHLSIGTPPVDIFGSVDTGSDCTWTQCEPCPELDCFKQEPPLFDPKKSSTYNSISCSSSQCAVVTSNCSEGDCSYS 112 (374)
Q Consensus 33 ~~y~~~v~iGtP~Q~~~~~iDTgS~~twv~~~~c~~~~C~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~c~~~~~~~~ 112 (374)
++|+++|.||||+|++.|+|||||+++||+|..|. .|..+.++.|||++|+|++...|++..|... .+|.++.|.|.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~--~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~-~~~~~~~~~~~ 78 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCK--NCGIHMEPPYNLNNSITSSILYCDCNKCCYC-LSCLNNKCEYS 78 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCC--CcCCCCCCCcCcccccccccccCCCcccccc-CcCCCCcCcEE
Confidence 68999999999999999999999999999999998 7865667899999999999999999999653 45667789999
Q ss_pred eEeCCCCCceeeEEEEEEEEEEEecCCCC--ceecCcEEEeeeecCCCCCCC-CCCcceEeecCCCCCh--------hhh
Q 048503 113 FLYGRGAYASFSSGNLATETLTFNSTSGL--PVEMPNVIFGCGHKNLASPTS-DSKQTGIIGLGPGNSS--------LIS 181 (374)
Q Consensus 113 ~~y~~g~~~~~~~G~~~~D~v~i~~~~~~--~~~~~~~~fg~~~~~~~~~~~-~~~~~GilGLg~~~~s--------~~~ 181 (374)
+.|++| +.+.|.+++|+|.|++.... .....++.|||+..... .| ....+||||||+...+ +..
T Consensus 79 i~Y~~g---s~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~--~~~~~~~~GilGLg~~~~~~~~~~~~~l~~ 153 (326)
T cd06096 79 ISYSEG---SSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETN--LFLTQQATGILGLSLTKNNGLPTPIILLFT 153 (326)
T ss_pred EEECCC---CceeeEEEEEEEEeccCCCCccccccccEEeccCccccC--cccccccceEEEccCCcccccCchhHHHHH
Confidence 999999 77789999999999873211 01112578999998776 55 6788999999998643 112
Q ss_pred hhhcc--ccCcceecccCCCcceEEEcC----CCC---------CCCeeeeeeeeCCceeEEEeEEEECCEEEEeeeCCC
Q 048503 182 QMGTS--IAGKFSYCLPDQGSSKINFGG----IVA---------GAGVVSTPLIIRDHYYLSLEAISVGNQRLEFVSSST 246 (374)
Q Consensus 182 ql~~~--~~~~Fs~~l~~~~~G~l~~Gg----~~~---------~~~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~ 246 (374)
| ... ..++||+||.+. .|.|+||| ++. .+++.|+|+....+|.|.+++|+|+++.........
T Consensus 154 ~-~~~~~~~~~FS~~l~~~-~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~~~~ 231 (326)
T cd06096 154 K-RPKLKKDKIFSICLSED-GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGNTKG 231 (326)
T ss_pred h-cccccCCceEEEEEcCC-CeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccceecccC
Confidence 2 112 248999999985 89999999 233 147999999988899999999999998611112567
Q ss_pred CcEEEecCcceeecChHHHHHHHHHHHhhhccCcccCCCCCCCccccceeeccCCCCCCeEEEEEe-CceEEECCCceEE
Q 048503 247 GNIFVDTGVLRTLLPLEYHSNLKSVMSNMIKAQPVKGVGAEPGFSDVLCYNISSQPKFPEVTIHFR-GADVKLSPSNLFR 325 (374)
Q Consensus 247 ~~~iiDTGt~~i~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~-g~~~~i~~~~y~~ 325 (374)
..+++||||++++||++++++|.+++ |+|+|.|+ |.+++|+|++|++
T Consensus 232 ~~aivDSGTs~~~lp~~~~~~l~~~~--------------------------------P~i~~~f~~g~~~~i~p~~y~~ 279 (326)
T cd06096 232 LGMLVDSGSTLSHFPEDLYNKINNFF--------------------------------PTITIIFENNLKIDWKPSSYLY 279 (326)
T ss_pred CCEEEeCCCCcccCCHHHHHHHHhhc--------------------------------CcEEEEEcCCcEEEECHHHhcc
Confidence 88999999999999999998885443 89999998 8999999999998
Q ss_pred EeCCCeEEEEEEcCCCceeecccceeeeEEEEECCCCEEEEeeCCCC
Q 048503 326 NISDEIMCSAFRGGNANIVYGRIMQINFLIGYDIEQAMVSFKPSRCT 372 (374)
Q Consensus 326 ~~~~~~~C~~i~~~~~~~iLG~~fl~~~y~vfD~e~~rigfa~~~C~ 372 (374)
...+..+|..+...++.||||.+|||++|+|||++++|||||+++|.
T Consensus 280 ~~~~~~c~~~~~~~~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 280 KKESFWCKGGEKSVSNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred ccCCceEEEEEecCCCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 87665566667766789999999999999999999999999999994
No 5
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=2.5e-53 Score=403.49 Aligned_cols=296 Identities=22% Similarity=0.377 Sum_probs=246.1
Q ss_pred eeeCceEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCC--CCCCCCCCCCCCCCCCCCCcccCCCCCcCCCCCCCCCC
Q 048503 29 ISVDDIYLMHLSIGTPPVDIFGSVDTGSDCTWTQCEPCPE--LDCFKQEPPLFDPKKSSTYNSISCSSSQCAVVTSNCSE 106 (374)
Q Consensus 29 ~~~~~~y~~~v~iGtP~Q~~~~~iDTgS~~twv~~~~c~~--~~C~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~c~~ 106 (374)
++.+.+|+++|.||||+|+|.|+|||||+++||++..|.. ..| ..++.|||++|+|++...
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C--~~~~~y~~~~SsT~~~~~--------------- 63 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIAC--WLHHKYNSSKSSTYVKNG--------------- 63 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccc--cCcCcCCcccCcceeeCC---------------
Confidence 3568899999999999999999999999999999999973 357 467899999999999765
Q ss_pred CCCeeeeEeCCCCCceeeEEEEEEEEEEEecCCCCceecCcEEEeeeecCCCCCCC-CCCcceEeecCCCCCh------h
Q 048503 107 GDCSYSFLYGRGAYASFSSGNLATETLTFNSTSGLPVEMPNVIFGCGHKNLASPTS-DSKQTGIIGLGPGNSS------L 179 (374)
Q Consensus 107 ~~~~~~~~y~~g~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~~~-~~~~~GilGLg~~~~s------~ 179 (374)
+.+.+.|++| +. .|.++.|+|++++ +.++++.||++...... .| ...++||||||+...+ +
T Consensus 64 --~~~~i~Yg~G---~~-~G~~~~D~v~~g~-----~~~~~~~Fg~~~~~~~~-~~~~~~~dGilGLg~~~~s~~~~~~~ 131 (325)
T cd05490 64 --TEFAIQYGSG---SL-SGYLSQDTVSIGG-----LQVEGQLFGEAVKQPGI-TFIAAKFDGILGMAYPRISVDGVTPV 131 (325)
T ss_pred --cEEEEEECCc---EE-EEEEeeeEEEECC-----EEEcCEEEEEEeeccCC-cccceeeeEEEecCCccccccCCCCH
Confidence 8999999999 75 6999999999999 89999999999877642 34 4578999999987654 3
Q ss_pred hhhhhc---cccCcceecccCC----CcceEEEcC----CCCCCCeeeeeeeeCCceeEEEeEEEECCEEEEeeeCCCCc
Q 048503 180 ISQMGT---SIAGKFSYCLPDQ----GSSKINFGG----IVAGAGVVSTPLIIRDHYYLSLEAISVGNQRLEFVSSSTGN 248 (374)
Q Consensus 180 ~~ql~~---~~~~~Fs~~l~~~----~~G~l~~Gg----~~~~~~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~ 248 (374)
+.+|.. +..++||+||.+. ..|.|+||| ++.+ ++.|+|+....+|.|++++|.|++..... .....
T Consensus 132 ~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g-~l~~~~~~~~~~w~v~l~~i~vg~~~~~~--~~~~~ 208 (325)
T cd05490 132 FDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTG-DLHYVNVTRKAYWQIHMDQVDVGSGLTLC--KGGCE 208 (325)
T ss_pred HHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCC-ceEEEEcCcceEEEEEeeEEEECCeeeec--CCCCE
Confidence 344443 3679999999753 369999999 4445 89999998888999999999999875432 45578
Q ss_pred EEEecCcceeecChHHHHHHHHHHHhhhccCcccCCCCCCCccccceeeccCCCCCCeEEEEEeCceEEECCCceEEEeC
Q 048503 249 IFVDTGVLRTLLPLEYHSNLKSVMSNMIKAQPVKGVGAEPGFSDVLCYNISSQPKFPEVTIHFRGADVKLSPSNLFRNIS 328 (374)
Q Consensus 249 ~iiDTGt~~i~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~i~~~~y~~~~~ 328 (374)
++|||||+++++|.+++++|.+++... .... +. +.++|+... .+|+|+|+|+|..++|+|++|+++..
T Consensus 209 aiiDSGTt~~~~p~~~~~~l~~~~~~~----~~~~----~~-~~~~C~~~~---~~P~i~f~fgg~~~~l~~~~y~~~~~ 276 (325)
T cd05490 209 AIVDTGTSLITGPVEEVRALQKAIGAV----PLIQ----GE-YMIDCEKIP---TLPVISFSLGGKVYPLTGEDYILKVS 276 (325)
T ss_pred EEECCCCccccCCHHHHHHHHHHhCCc----cccC----CC-EEecccccc---cCCCEEEEECCEEEEEChHHeEEecc
Confidence 999999999999999999998877432 1112 33 378999765 78999999999999999999998754
Q ss_pred C--CeEEEE-EEcC------CCceeecccceeeeEEEEECCCCEEEEee
Q 048503 329 D--EIMCSA-FRGG------NANIVYGRIMQINFLIGYDIEQAMVSFKP 368 (374)
Q Consensus 329 ~--~~~C~~-i~~~------~~~~iLG~~fl~~~y~vfD~e~~rigfa~ 368 (374)
. ...|++ |+.. ++.||||.+|||++|+|||++++|||||+
T Consensus 277 ~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 277 QRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred CCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 3 457986 7642 26799999999999999999999999996
No 6
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.9e-53 Score=402.75 Aligned_cols=289 Identities=26% Similarity=0.408 Sum_probs=242.7
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCcCCCCCCCCCCCCCeeeeE
Q 048503 35 YLMHLSIGTPPVDIFGSVDTGSDCTWTQCEPCPELDCFKQEPPLFDPKKSSTYNSISCSSSQCAVVTSNCSEGDCSYSFL 114 (374)
Q Consensus 35 y~~~v~iGtP~Q~~~~~iDTgS~~twv~~~~c~~~~C~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~c~~~~~~~~~~ 114 (374)
|+++|+||||+|+++|+|||||+++||++..|....| ..++.|||++|+|++... +.+.+.
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C--~~~~~y~~~~SsT~~~~~-----------------~~~~i~ 61 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQAC--TKHNRFQPSESSTYVSNG-----------------EAFSIQ 61 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCccc--CccceECCCCCcccccCC-----------------cEEEEE
Confidence 7999999999999999999999999999999986688 567899999999999876 899999
Q ss_pred eCCCCCceeeEEEEEEEEEEEecCCCCceecCcEEEeeeecCCCCCCC-CCCcceEeecCCCCCh------hhhhhhc--
Q 048503 115 YGRGAYASFSSGNLATETLTFNSTSGLPVEMPNVIFGCGHKNLASPTS-DSKQTGIIGLGPGNSS------LISQMGT-- 185 (374)
Q Consensus 115 y~~g~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~~~-~~~~~GilGLg~~~~s------~~~ql~~-- 185 (374)
|++| +. .|.+++|+|.|++ +.++++.||++...... .| ...++||||||+...+ ++.+|..
T Consensus 62 Yg~g---~~-~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~-~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg 131 (316)
T cd05486 62 YGTG---SL-TGIIGIDQVTVEG-----ITVQNQQFAESVSEPGS-TFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQN 131 (316)
T ss_pred eCCc---EE-EEEeeecEEEECC-----EEEcCEEEEEeeccCcc-cccccccceEeccCchhhccCCCCCHHHHHHhcC
Confidence 9999 75 6999999999998 89999999998776542 34 4678999999987654 3344433
Q ss_pred -cccCcceecccCC----CcceEEEcC----CCCCCCeeeeeeeeCCceeEEEeEEEECCEEEEeeeCCCCcEEEecCcc
Q 048503 186 -SIAGKFSYCLPDQ----GSSKINFGG----IVAGAGVVSTPLIIRDHYYLSLEAISVGNQRLEFVSSSTGNIFVDTGVL 256 (374)
Q Consensus 186 -~~~~~Fs~~l~~~----~~G~l~~Gg----~~~~~~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~iiDTGt~ 256 (374)
+..++||+||.+. ..|.|+||| ++.+ ++.|+|+....+|.|.+++|+|+++.+.. .....++|||||+
T Consensus 132 ~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g-~l~~~pi~~~~~w~v~l~~i~v~g~~~~~--~~~~~aiiDTGTs 208 (316)
T cd05486 132 LVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSG-QLNWVPVTVQGYWQIQLDNIQVGGTVIFC--SDGCQAIVDTGTS 208 (316)
T ss_pred CCCCCEEEEEEccCCCCCCCcEEEEcccCHHHccc-ceEEEECCCceEEEEEeeEEEEecceEec--CCCCEEEECCCcc
Confidence 3578999999863 369999999 3444 89999999888999999999999987653 4457899999999
Q ss_pred eeecChHHHHHHHHHHHhhhccCcccCCCCCCCccccceeeccCCCCCCeEEEEEeCceEEECCCceEEEe--CCCeEEE
Q 048503 257 RTLLPLEYHSNLKSVMSNMIKAQPVKGVGAEPGFSDVLCYNISSQPKFPEVTIHFRGADVKLSPSNLFRNI--SDEIMCS 334 (374)
Q Consensus 257 ~i~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~i~~~~y~~~~--~~~~~C~ 334 (374)
++++|++++++|.+.+.. ... . +. +.++|+..+ .+|+|+|+|+|..++|+|++|++.. .+...|+
T Consensus 209 ~~~lP~~~~~~l~~~~~~----~~~-~----~~-~~~~C~~~~---~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~ 275 (316)
T cd05486 209 LITGPSGDIKQLQNYIGA----TAT-D----GE-YGVDCSTLS---LMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCS 275 (316)
T ss_pred hhhcCHHHHHHHHHHhCC----ccc-C----Cc-EEEeccccc---cCCCEEEEECCEEEEeCHHHeEEecccCCCCEEe
Confidence 999999999988766532 111 2 23 378999765 7999999999999999999999875 2356898
Q ss_pred E-EEcC------CCceeecccceeeeEEEEECCCCEEEEee
Q 048503 335 A-FRGG------NANIVYGRIMQINFLIGYDIEQAMVSFKP 368 (374)
Q Consensus 335 ~-i~~~------~~~~iLG~~fl~~~y~vfD~e~~rigfa~ 368 (374)
+ |+.. ++.||||.+|||++|+|||.+++|||||+
T Consensus 276 ~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 276 SGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred eEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 6 7643 25799999999999999999999999996
No 7
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=4e-53 Score=402.05 Aligned_cols=295 Identities=23% Similarity=0.377 Sum_probs=248.1
Q ss_pred eeeeCceEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCC--CCCCCCCCCCCCCCCCCCCcccCCCCCcCCCCCCCCC
Q 048503 28 IISVDDIYLMHLSIGTPPVDIFGSVDTGSDCTWTQCEPCPE--LDCFKQEPPLFDPKKSSTYNSISCSSSQCAVVTSNCS 105 (374)
Q Consensus 28 ~~~~~~~y~~~v~iGtP~Q~~~~~iDTgS~~twv~~~~c~~--~~C~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~c~ 105 (374)
.++.+..|+++|+||||+|+++|+|||||+++||++..|.. ..| ..+..|+|++|+|++...
T Consensus 2 ~~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c--~~~~~y~~~~SsT~~~~~-------------- 65 (326)
T cd05487 2 TNYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTAC--VTHNLYDASDSSTYKENG-------------- 65 (326)
T ss_pred cccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhh--cccCcCCCCCCeeeeECC--------------
Confidence 46778999999999999999999999999999999999974 357 567899999999999876
Q ss_pred CCCCeeeeEeCCCCCceeeEEEEEEEEEEEecCCCCceecCcEEEeeeecCCCCCCC-CCCcceEeecCCCCCh------
Q 048503 106 EGDCSYSFLYGRGAYASFSSGNLATETLTFNSTSGLPVEMPNVIFGCGHKNLASPTS-DSKQTGIIGLGPGNSS------ 178 (374)
Q Consensus 106 ~~~~~~~~~y~~g~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~~~-~~~~~GilGLg~~~~s------ 178 (374)
+.+.+.|++| + +.|.+++|+|.+++ +.+ ++.||++...... .| ...++||||||+...+
T Consensus 66 ---~~~~~~Yg~g---~-~~G~~~~D~v~~g~-----~~~-~~~fg~~~~~~~~-~~~~~~~dGilGLg~~~~s~~~~~~ 131 (326)
T cd05487 66 ---TEFTIHYASG---T-VKGFLSQDIVTVGG-----IPV-TQMFGEVTALPAI-PFMLAKFDGVLGMGYPKQAIGGVTP 131 (326)
T ss_pred ---EEEEEEeCCc---e-EEEEEeeeEEEECC-----EEe-eEEEEEEEeccCC-ccceeecceEEecCChhhcccCCCC
Confidence 8999999999 7 57999999999998 676 4889999876432 23 4578999999987554
Q ss_pred ----hhhhhhccccCcceecccCC----CcceEEEcC----CCCCCCeeeeeeeeCCceeEEEeEEEECCEEEEeeeCCC
Q 048503 179 ----LISQMGTSIAGKFSYCLPDQ----GSSKINFGG----IVAGAGVVSTPLIIRDHYYLSLEAISVGNQRLEFVSSST 246 (374)
Q Consensus 179 ----~~~ql~~~~~~~Fs~~l~~~----~~G~l~~Gg----~~~~~~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~ 246 (374)
+.+| +.+.+++||+||.+. ..|.|+||| ++.+ ++.|+|+....+|.|.+++|+|+++.+.. ...
T Consensus 132 ~~~~L~~q-g~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g-~l~~~~~~~~~~w~v~l~~i~vg~~~~~~--~~~ 207 (326)
T cd05487 132 VFDNIMSQ-GVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQG-DFHYINTSKTGFWQIQMKGVSVGSSTLLC--EDG 207 (326)
T ss_pred HHHHHHhc-CCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccC-ceEEEECCcCceEEEEecEEEECCEEEec--CCC
Confidence 4444 555789999999864 469999999 4555 89999998888999999999999998754 455
Q ss_pred CcEEEecCcceeecChHHHHHHHHHHHhhhccCcccCCCCCCCccccceeeccCCCCCCeEEEEEeCceEEECCCceEEE
Q 048503 247 GNIFVDTGVLRTLLPLEYHSNLKSVMSNMIKAQPVKGVGAEPGFSDVLCYNISSQPKFPEVTIHFRGADVKLSPSNLFRN 326 (374)
Q Consensus 247 ~~~iiDTGt~~i~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~i~~~~y~~~ 326 (374)
..++|||||+++++|.+++++|++++... .. . ..+ .++|+... .+|+|+|+|++..++|++++|+++
T Consensus 208 ~~aiiDSGts~~~lP~~~~~~l~~~~~~~----~~-~----~~y-~~~C~~~~---~~P~i~f~fgg~~~~v~~~~yi~~ 274 (326)
T cd05487 208 CTAVVDTGASFISGPTSSISKLMEALGAK----ER-L----GDY-VVKCNEVP---TLPDISFHLGGKEYTLSSSDYVLQ 274 (326)
T ss_pred CEEEECCCccchhCcHHHHHHHHHHhCCc----cc-C----CCE-EEeccccC---CCCCEEEEECCEEEEeCHHHhEEe
Confidence 78999999999999999999998877432 11 2 333 78999865 789999999999999999999987
Q ss_pred eCC--CeEEEE-EEcC------CCceeecccceeeeEEEEECCCCEEEEeeC
Q 048503 327 ISD--EIMCSA-FRGG------NANIVYGRIMQINFLIGYDIEQAMVSFKPS 369 (374)
Q Consensus 327 ~~~--~~~C~~-i~~~------~~~~iLG~~fl~~~y~vfD~e~~rigfa~~ 369 (374)
..+ +..|++ |+.. ++.||||.+|||++|+|||++++|||||++
T Consensus 275 ~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 275 DSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred ccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 643 568976 7743 257999999999999999999999999985
No 8
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1.3e-52 Score=397.41 Aligned_cols=293 Identities=25% Similarity=0.421 Sum_probs=247.8
Q ss_pred CceEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCcCCCCCCCCCCCCCee
Q 048503 32 DDIYLMHLSIGTPPVDIFGSVDTGSDCTWTQCEPCPELDCFKQEPPLFDPKKSSTYNSISCSSSQCAVVTSNCSEGDCSY 111 (374)
Q Consensus 32 ~~~y~~~v~iGtP~Q~~~~~iDTgS~~twv~~~~c~~~~C~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~c~~~~~~~ 111 (374)
+..|+++|.||||+|++.|+|||||+++||++..|....| ..++.|||++|+|++..+ +.+
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C--~~~~~f~~~~SsT~~~~~-----------------~~~ 61 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQAC--TNHTKFNPSQSSTYSTNG-----------------ETF 61 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccc--cccCCCCcccCCCceECC-----------------cEE
Confidence 5789999999999999999999999999999999987788 567899999999999876 899
Q ss_pred eeEeCCCCCceeeEEEEEEEEEEEecCCCCceecCcEEEeeeecCCCCCCC-CCCcceEeecCCCCC------hhhhhhh
Q 048503 112 SFLYGRGAYASFSSGNLATETLTFNSTSGLPVEMPNVIFGCGHKNLASPTS-DSKQTGIIGLGPGNS------SLISQMG 184 (374)
Q Consensus 112 ~~~y~~g~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~~~-~~~~~GilGLg~~~~------s~~~ql~ 184 (374)
.+.|++| +. .|.+++|+|.+++ +.++++.||++...... .| ....+||||||+... ++++||.
T Consensus 62 ~~~Yg~G---s~-~G~~~~D~i~~g~-----~~i~~~~Fg~~~~~~~~-~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~ 131 (318)
T cd05477 62 SLQYGSG---SL-TGIFGYDTVTVQG-----IIITNQEFGLSETEPGT-NFVYAQFDGILGLAYPSISAGGATTVMQGMM 131 (318)
T ss_pred EEEECCc---EE-EEEEEeeEEEECC-----EEEcCEEEEEEEecccc-cccccceeeEeecCcccccccCCCCHHHHHH
Confidence 9999999 75 6999999999998 89999999999987542 23 457899999998643 3666665
Q ss_pred cc---ccCcceecccCC---CcceEEEcC----CCCCCCeeeeeeeeCCceeEEEeEEEECCEEEEeeeCCCCcEEEecC
Q 048503 185 TS---IAGKFSYCLPDQ---GSSKINFGG----IVAGAGVVSTPLIIRDHYYLSLEAISVGNQRLEFVSSSTGNIFVDTG 254 (374)
Q Consensus 185 ~~---~~~~Fs~~l~~~---~~G~l~~Gg----~~~~~~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~iiDTG 254 (374)
.. .+++||+||.+. ..|.|+||| ++.+ ++.|+|+....+|.|.+.+|+|+++.+.. ......++||||
T Consensus 132 ~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g-~l~~~pv~~~~~w~v~l~~i~v~g~~~~~-~~~~~~~iiDSG 209 (318)
T cd05477 132 QQNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTG-QIYWTPVTSETYWQIGIQGFQINGQATGW-CSQGCQAIVDTG 209 (318)
T ss_pred hcCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCC-ceEEEecCCceEEEEEeeEEEECCEEecc-cCCCceeeECCC
Confidence 54 579999999874 469999999 4444 89999998888999999999999988653 134567999999
Q ss_pred cceeecChHHHHHHHHHHHhhhccCcccCCCCCCCccccceeeccCCCCCCeEEEEEeCceEEECCCceEEEeCCCeEEE
Q 048503 255 VLRTLLPLEYHSNLKSVMSNMIKAQPVKGVGAEPGFSDVLCYNISSQPKFPEVTIHFRGADVKLSPSNLFRNISDEIMCS 334 (374)
Q Consensus 255 t~~i~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~i~~~~y~~~~~~~~~C~ 334 (374)
|+++++|++++++|++.+... .... +. +.++|+... .+|.|+|+|+|.++.|++++|+... ...|+
T Consensus 210 tt~~~lP~~~~~~l~~~~~~~----~~~~----~~-~~~~C~~~~---~~p~l~~~f~g~~~~v~~~~y~~~~--~~~C~ 275 (318)
T cd05477 210 TSLLTAPQQVMSTLMQSIGAQ----QDQY----GQ-YVVNCNNIQ---NLPTLTFTINGVSFPLPPSAYILQN--NGYCT 275 (318)
T ss_pred CccEECCHHHHHHHHHHhCCc----cccC----CC-EEEeCCccc---cCCcEEEEECCEEEEECHHHeEecC--CCeEE
Confidence 999999999999998877543 2222 33 378999765 7899999999999999999998765 45797
Q ss_pred E-EEcC------C-CceeecccceeeeEEEEECCCCEEEEeeC
Q 048503 335 A-FRGG------N-ANIVYGRIMQINFLIGYDIEQAMVSFKPS 369 (374)
Q Consensus 335 ~-i~~~------~-~~~iLG~~fl~~~y~vfD~e~~rigfa~~ 369 (374)
+ |.+. + ..||||.+|||++|+|||++++|||||++
T Consensus 276 ~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 276 VGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred EEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 5 7642 2 46999999999999999999999999985
No 9
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=1.2e-52 Score=397.12 Aligned_cols=288 Identities=24% Similarity=0.386 Sum_probs=242.3
Q ss_pred ceeeeeCceEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCC-CCCCCCCCCCCCCCCCCCCcccCCCCCcCCCCCCCC
Q 048503 26 AEIISVDDIYLMHLSIGTPPVDIFGSVDTGSDCTWTQCEPCPE-LDCFKQEPPLFDPKKSSTYNSISCSSSQCAVVTSNC 104 (374)
Q Consensus 26 ~~~~~~~~~y~~~v~iGtP~Q~~~~~iDTgS~~twv~~~~c~~-~~C~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~c 104 (374)
++.++.+.+|+++|+||||+|++.|+|||||+++||++..|.. ..| ..++.|||++|+|++...
T Consensus 2 ~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C--~~~~~y~~~~SsT~~~~~------------- 66 (317)
T cd06098 2 ALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIAC--YFHSKYKSSKSSTYKKNG------------- 66 (317)
T ss_pred cccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccc--cccCcCCcccCCCcccCC-------------
Confidence 4568889999999999999999999999999999999999963 478 567899999999999876
Q ss_pred CCCCCeeeeEeCCCCCceeeEEEEEEEEEEEecCCCCceecCcEEEeeeecCCCCCCC-CCCcceEeecCCCCCh-----
Q 048503 105 SEGDCSYSFLYGRGAYASFSSGNLATETLTFNSTSGLPVEMPNVIFGCGHKNLASPTS-DSKQTGIIGLGPGNSS----- 178 (374)
Q Consensus 105 ~~~~~~~~~~y~~g~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~~~-~~~~~GilGLg~~~~s----- 178 (374)
..+.+.|++| +. .|.+++|+|.+++ +.++++.||++...... .| ...++||||||+...+
T Consensus 67 ----~~~~i~Yg~G---~~-~G~~~~D~v~ig~-----~~v~~~~f~~~~~~~~~-~~~~~~~dGilGLg~~~~s~~~~~ 132 (317)
T cd06098 67 ----TSASIQYGTG---SI-SGFFSQDSVTVGD-----LVVKNQVFIEATKEPGL-TFLLAKFDGILGLGFQEISVGKAV 132 (317)
T ss_pred ----CEEEEEcCCc---eE-EEEEEeeEEEECC-----EEECCEEEEEEEecCCc-cccccccceeccccccchhhcCCC
Confidence 8999999999 75 6999999999998 89999999999876542 34 5678999999997654
Q ss_pred -hhhhh---hccccCcceecccCC----CcceEEEcC----CCCCCCeeeeeeeeCCceeEEEeEEEECCEEEEeeeCCC
Q 048503 179 -LISQM---GTSIAGKFSYCLPDQ----GSSKINFGG----IVAGAGVVSTPLIIRDHYYLSLEAISVGNQRLEFVSSST 246 (374)
Q Consensus 179 -~~~ql---~~~~~~~Fs~~l~~~----~~G~l~~Gg----~~~~~~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~ 246 (374)
+..+| +.+..++||+||.+. ..|.|+||| ++.+ ++.|+|+....+|.|.+++|+|+++.+.. ....
T Consensus 133 ~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g-~l~~~pv~~~~~w~v~l~~i~v~g~~~~~-~~~~ 210 (317)
T cd06098 133 PVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKG-EHTYVPVTRKGYWQFEMGDVLIGGKSTGF-CAGG 210 (317)
T ss_pred CHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhccc-ceEEEecCcCcEEEEEeCeEEECCEEeee-cCCC
Confidence 22333 334678999999753 469999999 4455 89999998888999999999999988654 2345
Q ss_pred CcEEEecCcceeecChHHHHHHHHHHHhhhccCcccCCCCCCCccccceeeccCCCCCCeEEEEEeCceEEECCCceEEE
Q 048503 247 GNIFVDTGVLRTLLPLEYHSNLKSVMSNMIKAQPVKGVGAEPGFSDVLCYNISSQPKFPEVTIHFRGADVKLSPSNLFRN 326 (374)
Q Consensus 247 ~~~iiDTGt~~i~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~i~~~~y~~~ 326 (374)
..++|||||+++++|++++++|. . .++|+... .+|+|+|+|+|..++|+|++|+++
T Consensus 211 ~~aivDTGTs~~~lP~~~~~~i~-------------~--------~~~C~~~~---~~P~i~f~f~g~~~~l~~~~yi~~ 266 (317)
T cd06098 211 CAAIADSGTSLLAGPTTIVTQIN-------------S--------AVDCNSLS---SMPNVSFTIGGKTFELTPEQYILK 266 (317)
T ss_pred cEEEEecCCcceeCCHHHHHhhh-------------c--------cCCccccc---cCCcEEEEECCEEEEEChHHeEEe
Confidence 78999999999999998766552 2 56898765 799999999999999999999987
Q ss_pred eCC--CeEEEE-EEcC------CCceeecccceeeeEEEEECCCCEEEEee
Q 048503 327 ISD--EIMCSA-FRGG------NANIVYGRIMQINFLIGYDIEQAMVSFKP 368 (374)
Q Consensus 327 ~~~--~~~C~~-i~~~------~~~~iLG~~fl~~~y~vfD~e~~rigfa~ 368 (374)
..+ ...|++ |+.. ++.||||.+|||++|+|||++++|||||+
T Consensus 267 ~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 267 VGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred ecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 543 458987 7642 25799999999999999999999999996
No 10
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=1.8e-52 Score=396.56 Aligned_cols=296 Identities=23% Similarity=0.401 Sum_probs=248.0
Q ss_pred ceeeeeCceEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCcCCCCCCCCC
Q 048503 26 AEIISVDDIYLMHLSIGTPPVDIFGSVDTGSDCTWTQCEPCPELDCFKQEPPLFDPKKSSTYNSISCSSSQCAVVTSNCS 105 (374)
Q Consensus 26 ~~~~~~~~~y~~~v~iGtP~Q~~~~~iDTgS~~twv~~~~c~~~~C~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~c~ 105 (374)
++.++.+..|+++|+||||+|++.|+|||||+++||++..|....| ..++.|++++|+|++..+
T Consensus 2 ~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C--~~~~~y~~~~Sst~~~~~-------------- 65 (320)
T cd05488 2 PLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIAC--FLHSKYDSSASSTYKANG-------------- 65 (320)
T ss_pred cccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCccc--CCcceECCCCCcceeeCC--------------
Confidence 4567788999999999999999999999999999999999987788 566899999999999876
Q ss_pred CCCCeeeeEeCCCCCceeeEEEEEEEEEEEecCCCCceecCcEEEeeeecCCCCCCC-CCCcceEeecCCCCChhh----
Q 048503 106 EGDCSYSFLYGRGAYASFSSGNLATETLTFNSTSGLPVEMPNVIFGCGHKNLASPTS-DSKQTGIIGLGPGNSSLI---- 180 (374)
Q Consensus 106 ~~~~~~~~~y~~g~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~~~-~~~~~GilGLg~~~~s~~---- 180 (374)
+.+.+.|++| +. .|.+++|+|.+++ +.++++.||++....+. .| ....+||||||+...+..
T Consensus 66 ---~~~~~~y~~g---~~-~G~~~~D~v~ig~-----~~~~~~~f~~a~~~~g~-~~~~~~~dGilGLg~~~~s~~~~~~ 132 (320)
T cd05488 66 ---TEFKIQYGSG---SL-EGFVSQDTLSIGD-----LTIKKQDFAEATSEPGL-AFAFGKFDGILGLAYDTISVNKIVP 132 (320)
T ss_pred ---CEEEEEECCc---eE-EEEEEEeEEEECC-----EEECCEEEEEEecCCCc-ceeeeeeceEEecCCccccccCCCC
Confidence 8999999999 74 7999999999998 89999999999877652 33 457899999999865421
Q ss_pred --hhh---hccccCcceecccCC--CcceEEEcC----CCCCCCeeeeeeeeCCceeEEEeEEEECCEEEEeeeCCCCcE
Q 048503 181 --SQM---GTSIAGKFSYCLPDQ--GSSKINFGG----IVAGAGVVSTPLIIRDHYYLSLEAISVGNQRLEFVSSSTGNI 249 (374)
Q Consensus 181 --~ql---~~~~~~~Fs~~l~~~--~~G~l~~Gg----~~~~~~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~ 249 (374)
.++ +.+.+++||+||.+. ..|.|+||| ++.+ ++.|+|+....+|.|.+++|+||++.+.. ....+
T Consensus 133 ~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g-~l~~~p~~~~~~w~v~l~~i~vg~~~~~~---~~~~~ 208 (320)
T cd05488 133 PFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTG-KITWLPVRRKAYWEVELEKIGLGDEELEL---ENTGA 208 (320)
T ss_pred HHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCC-ceEEEeCCcCcEEEEEeCeEEECCEEecc---CCCeE
Confidence 122 334678999999864 579999999 3444 89999999888999999999999987753 35689
Q ss_pred EEecCcceeecChHHHHHHHHHHHhhhccCcccCCCCCCCccccceeeccCCCCCCeEEEEEeCceEEECCCceEEEeCC
Q 048503 250 FVDTGVLRTLLPLEYHSNLKSVMSNMIKAQPVKGVGAEPGFSDVLCYNISSQPKFPEVTIHFRGADVKLSPSNLFRNISD 329 (374)
Q Consensus 250 iiDTGt~~i~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~i~~~~y~~~~~~ 329 (374)
+|||||+++++|+++++.|.+.+.+. .... ..+ .++|+... .+|+|+|+|+|.++.|+|++|+++.
T Consensus 209 ivDSGtt~~~lp~~~~~~l~~~~~~~----~~~~----~~~-~~~C~~~~---~~P~i~f~f~g~~~~i~~~~y~~~~-- 274 (320)
T cd05488 209 AIDTGTSLIALPSDLAEMLNAEIGAK----KSWN----GQY-TVDCSKVD---SLPDLTFNFDGYNFTLGPFDYTLEV-- 274 (320)
T ss_pred EEcCCcccccCCHHHHHHHHHHhCCc----cccC----CcE-Eeeccccc---cCCCEEEEECCEEEEECHHHheecC--
Confidence 99999999999999999987776432 2212 333 67999765 7999999999999999999998754
Q ss_pred CeEEEE-EEcC------CCceeecccceeeeEEEEECCCCEEEEee
Q 048503 330 EIMCSA-FRGG------NANIVYGRIMQINFLIGYDIEQAMVSFKP 368 (374)
Q Consensus 330 ~~~C~~-i~~~------~~~~iLG~~fl~~~y~vfD~e~~rigfa~ 368 (374)
...|++ +... +..||||.+|||++|+|||.+++|||||+
T Consensus 275 ~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 275 SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 347987 6542 24799999999999999999999999996
No 11
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.2e-51 Score=392.16 Aligned_cols=299 Identities=24% Similarity=0.417 Sum_probs=250.5
Q ss_pred cceeeeeCceEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCC--CCCCCCCCCCCCCCCCCCCcccCCCCCcCCCCCC
Q 048503 25 QAEIISVDDIYLMHLSIGTPPVDIFGSVDTGSDCTWTQCEPCPE--LDCFKQEPPLFDPKKSSTYNSISCSSSQCAVVTS 102 (374)
Q Consensus 25 ~~~~~~~~~~y~~~v~iGtP~Q~~~~~iDTgS~~twv~~~~c~~--~~C~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~ 102 (374)
+++.++.+..|+++|+||||+|++.|++||||+++||++..|.. ..| ..++.|||++|+|++...
T Consensus 2 ~~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c--~~~~~y~~~~Sst~~~~~----------- 68 (329)
T cd05485 2 EPLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIAC--LLHNKYDSTKSSTYKKNG----------- 68 (329)
T ss_pred ccceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccc--cCCCeECCcCCCCeEECC-----------
Confidence 46788999999999999999999999999999999999999963 257 457789999999999876
Q ss_pred CCCCCCCeeeeEeCCCCCceeeEEEEEEEEEEEecCCCCceecCcEEEeeeecCCCCCCC-CCCcceEeecCCCCCh---
Q 048503 103 NCSEGDCSYSFLYGRGAYASFSSGNLATETLTFNSTSGLPVEMPNVIFGCGHKNLASPTS-DSKQTGIIGLGPGNSS--- 178 (374)
Q Consensus 103 ~c~~~~~~~~~~y~~g~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~~~-~~~~~GilGLg~~~~s--- 178 (374)
+.+.+.|++| + +.|.++.|+|++++ +.++++.||++...... .| ..+.+||||||+...+
T Consensus 69 ------~~~~i~Y~~g---~-~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~-~~~~~~~~GilGLg~~~~s~~~ 132 (329)
T cd05485 69 ------TEFAIQYGSG---S-LSGFLSTDTVSVGG-----VSVKGQTFAEAINEPGL-TFVAAKFDGILGMGYSSISVDG 132 (329)
T ss_pred ------eEEEEEECCc---e-EEEEEecCcEEECC-----EEECCEEEEEEEecCCc-cccccccceEEEcCCccccccC
Confidence 8999999999 7 46999999999998 89999999999876542 34 5678999999998654
Q ss_pred ---hhhhhhc---cccCcceecccCC----CcceEEEcC----CCCCCCeeeeeeeeCCceeEEEeEEEECCEEEEeeeC
Q 048503 179 ---LISQMGT---SIAGKFSYCLPDQ----GSSKINFGG----IVAGAGVVSTPLIIRDHYYLSLEAISVGNQRLEFVSS 244 (374)
Q Consensus 179 ---~~~ql~~---~~~~~Fs~~l~~~----~~G~l~~Gg----~~~~~~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~ 244 (374)
++.||.. +.+++||+||.+. ..|.|+||| ++.+ ++.|+|+....+|.|.++++.++++.+. .
T Consensus 133 ~~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g-~l~~~p~~~~~~~~v~~~~i~v~~~~~~---~ 208 (329)
T cd05485 133 VVPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTG-NFTYLPVTRKGYWQFKMDSVSVGEGEFC---S 208 (329)
T ss_pred CCCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHccc-ceEEEEcCCceEEEEEeeEEEECCeeec---C
Confidence 3344433 3578999999864 369999999 3445 8999999888899999999999998764 4
Q ss_pred CCCcEEEecCcceeecChHHHHHHHHHHHhhhccCcccCCCCCCCccccceeeccCCCCCCeEEEEEeCceEEECCCceE
Q 048503 245 STGNIFVDTGVLRTLLPLEYHSNLKSVMSNMIKAQPVKGVGAEPGFSDVLCYNISSQPKFPEVTIHFRGADVKLSPSNLF 324 (374)
Q Consensus 245 ~~~~~iiDTGt~~i~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~i~~~~y~ 324 (374)
....++|||||+++++|++++++|.+++... .... ..+ .++|+... .+|+|+|+|+|+++.|+|++|+
T Consensus 209 ~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~----~~~~----~~~-~~~C~~~~---~~p~i~f~fgg~~~~i~~~~yi 276 (329)
T cd05485 209 GGCQAIADTGTSLIAGPVDEIEKLNNAIGAK----PIIG----GEY-MVNCSAIP---SLPDITFVLGGKSFSLTGKDYV 276 (329)
T ss_pred CCcEEEEccCCcceeCCHHHHHHHHHHhCCc----cccC----CcE-EEeccccc---cCCcEEEEECCEEeEEChHHeE
Confidence 5568999999999999999999997776432 2222 333 78999765 7899999999999999999999
Q ss_pred EEeCC--CeEEEE-EEcC------CCceeecccceeeeEEEEECCCCEEEEee
Q 048503 325 RNISD--EIMCSA-FRGG------NANIVYGRIMQINFLIGYDIEQAMVSFKP 368 (374)
Q Consensus 325 ~~~~~--~~~C~~-i~~~------~~~~iLG~~fl~~~y~vfD~e~~rigfa~ 368 (374)
++..+ ..+|++ ++.. ++.||||.+|||++|+|||++++|||||+
T Consensus 277 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 277 LKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred EEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 87653 468987 7642 25799999999999999999999999985
No 12
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=9.7e-52 Score=403.59 Aligned_cols=300 Identities=20% Similarity=0.305 Sum_probs=245.1
Q ss_pred cccceeeeeCceEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCcCCCCCC
Q 048503 23 IYQAEIISVDDIYLMHLSIGTPPVDIFGSVDTGSDCTWTQCEPCPELDCFKQEPPLFDPKKSSTYNSISCSSSQCAVVTS 102 (374)
Q Consensus 23 ~~~~~~~~~~~~y~~~v~iGtP~Q~~~~~iDTgS~~twv~~~~c~~~~C~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~ 102 (374)
...++.+..+.+|+++|+||||+|+|.|+|||||+++||+|..|....| +.++.|||++|+|++..+
T Consensus 128 ~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C--~~~~~yd~s~SsT~~~~~----------- 194 (453)
T PTZ00147 128 DNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGC--ETKNLYDSSKSKTYEKDG----------- 194 (453)
T ss_pred CeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccc--cCCCccCCccCcceEECC-----------
Confidence 3456668999999999999999999999999999999999999986678 678899999999999876
Q ss_pred CCCCCCCeeeeEeCCCCCceeeEEEEEEEEEEEecCCCCceecCcEEEeeeecCCCC-CCC-CCCcceEeecCCCCCh--
Q 048503 103 NCSEGDCSYSFLYGRGAYASFSSGNLATETLTFNSTSGLPVEMPNVIFGCGHKNLAS-PTS-DSKQTGIIGLGPGNSS-- 178 (374)
Q Consensus 103 ~c~~~~~~~~~~y~~g~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~-~~~-~~~~~GilGLg~~~~s-- 178 (374)
+.+.+.|++| +. .|.++.|+|++++ +.++ ..|+++.+.... +.+ ...+|||||||+...+
T Consensus 195 ------~~f~i~Yg~G---sv-sG~~~~DtVtiG~-----~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~ 258 (453)
T PTZ00147 195 ------TKVEMNYVSG---TV-SGFFSKDLVTIGN-----LSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIG 258 (453)
T ss_pred ------CEEEEEeCCC---CE-EEEEEEEEEEECC-----EEEE-EEEEEEEeccCcccccccccccceecccCCccccc
Confidence 8999999999 74 6999999999998 7776 578887765431 123 4578999999998654
Q ss_pred ----hhhhhh---ccccCcceecccCC--CcceEEEcC----CCCCCCeeeeeeeeCCceeEEEeEEEECCEEEEeeeCC
Q 048503 179 ----LISQMG---TSIAGKFSYCLPDQ--GSSKINFGG----IVAGAGVVSTPLIIRDHYYLSLEAISVGNQRLEFVSSS 245 (374)
Q Consensus 179 ----~~~ql~---~~~~~~Fs~~l~~~--~~G~l~~Gg----~~~~~~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~ 245 (374)
++.+|. .+..++||+||.+. ..|.|+||| ++.+ ++.|+|+....+|.|.++ +.+++.. ..
T Consensus 259 ~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G-~l~y~pl~~~~~W~V~l~-~~vg~~~-----~~ 331 (453)
T PTZ00147 259 SVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEG-PLTYEKLNHDLYWQVDLD-VHFGNVS-----SE 331 (453)
T ss_pred cCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCC-ceEEEEcCCCceEEEEEE-EEECCEe-----cC
Confidence 333443 33678999999764 479999999 4455 899999987789999998 5777643 34
Q ss_pred CCcEEEecCcceeecChHHHHHHHHHHHhhhccCcccCCCCCCCccccceeeccCCCCCCeEEEEEeCceEEECCCceEE
Q 048503 246 TGNIFVDTGVLRTLLPLEYHSNLKSVMSNMIKAQPVKGVGAEPGFSDVLCYNISSQPKFPEVTIHFRGADVKLSPSNLFR 325 (374)
Q Consensus 246 ~~~~iiDTGt~~i~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~i~~~~y~~ 325 (374)
...++|||||+++++|++++++|.+++... .. ... +. +.++|+.. .+|+|+|.|+|..++|+|++|+.
T Consensus 332 ~~~aIiDSGTsli~lP~~~~~ai~~~l~~~-~~--~~~----~~-y~~~C~~~----~lP~~~f~f~g~~~~L~p~~yi~ 399 (453)
T PTZ00147 332 KANVIVDSGTSVITVPTEFLNKFVESLDVF-KV--PFL----PL-YVTTCNNT----KLPTLEFRSPNKVYTLEPEYYLQ 399 (453)
T ss_pred ceeEEECCCCchhcCCHHHHHHHHHHhCCe-ec--CCC----Ce-EEEeCCCC----CCCeEEEEECCEEEEECHHHhee
Confidence 578999999999999999999998877432 11 111 22 36789963 78999999999999999999987
Q ss_pred EeC--CCeEEEE-EEcCC---CceeecccceeeeEEEEECCCCEEEEeeCC
Q 048503 326 NIS--DEIMCSA-FRGGN---ANIVYGRIMQINFLIGYDIEQAMVSFKPSR 370 (374)
Q Consensus 326 ~~~--~~~~C~~-i~~~~---~~~iLG~~fl~~~y~vfD~e~~rigfa~~~ 370 (374)
... ....|++ +++.+ +.||||.+|||++|+|||.+++|||||+++
T Consensus 400 ~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 400 PIEDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred ccccCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 543 2457987 87643 589999999999999999999999999986
No 13
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-51 Score=396.45 Aligned_cols=334 Identities=37% Similarity=0.681 Sum_probs=276.5
Q ss_pred ccceeeeeCceEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCcCCCCCCC
Q 048503 24 YQAEIISVDDIYLMHLSIGTPPVDIFGSVDTGSDCTWTQCEPCPELDCFKQEPPLFDPKKSSTYNSISCSSSQCAVVTSN 103 (374)
Q Consensus 24 ~~~~~~~~~~~y~~~v~iGtP~Q~~~~~iDTgS~~twv~~~~c~~~~C~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~ 103 (374)
........+++|+++|.||||||+|.|++||||+++||+|..|.. .|....+..|||++|+|++...|.++.|......
T Consensus 36 ~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~-~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~ 114 (398)
T KOG1339|consen 36 PESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSS-ACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQS 114 (398)
T ss_pred ccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccc-cccccCCCccCccccccccccCCCCccccccccC
Confidence 344566778899999999999999999999999999999999974 6864445559999999999999999999988866
Q ss_pred C-CCCCCeeeeEeCCCCCceeeEEEEEEEEEEEecCCCCceecCcEEEeeeecCCCCCCCC-CCcceEeecCCCCChhhh
Q 048503 104 C-SEGDCSYSFLYGRGAYASFSSGNLATETLTFNSTSGLPVEMPNVIFGCGHKNLASPTSD-SKQTGIIGLGPGNSSLIS 181 (374)
Q Consensus 104 c-~~~~~~~~~~y~~g~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~~~~-~~~~GilGLg~~~~s~~~ 181 (374)
| .+..|.|.+.|++| ..+.|.+++|+|++++.+ .+.++++.|||+...... ... .+++||||||+...++..
T Consensus 115 ~~~~~~C~y~i~Ygd~---~~~~G~l~~Dtv~~~~~~--~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~~ 188 (398)
T KOG1339|consen 115 CSPNSSCPYSIQYGDG---SSTSGYLATDTVTFGGTT--SLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVPS 188 (398)
T ss_pred cccCCcCceEEEeCCC---CceeEEEEEEEEEEcccc--ccccccEEEEeeecCccc-cccccccceEeecCCCCcccee
Confidence 7 78999999999998 677899999999999853 257778999999999763 123 578999999999999999
Q ss_pred hhhccc--cCcceecccCC-----CcceEEEcC----CCCCCCeeeeeeeeCC--ceeEEEeEEEECCEE----EEeeeC
Q 048503 182 QMGTSI--AGKFSYCLPDQ-----GSSKINFGG----IVAGAGVVSTPLIIRD--HYYLSLEAISVGNQR----LEFVSS 244 (374)
Q Consensus 182 ql~~~~--~~~Fs~~l~~~-----~~G~l~~Gg----~~~~~~l~~~p~~~~~--~w~v~l~~i~v~~~~----~~~~~~ 244 (374)
|+.... .++||+||... ..|.|+||+ .+.+ .+.|+|++... +|.+.+.+|.|+++. ..+ ..
T Consensus 189 q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~-~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~~-~~ 266 (398)
T KOG1339|consen 189 QLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTG-SLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSLF-CT 266 (398)
T ss_pred ecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCC-ceEEEeeccCCCccEEEEEeEEEECCccCCCcceE-ec
Confidence 987763 44699999877 269999999 2333 79999999999 999999999999843 111 12
Q ss_pred CCCcEEEecCcceeecChHHHHHHHHHHHhhhccCcccCCCCCCCccccceeeccCC-CCCCeEEEEEe-CceEEECCCc
Q 048503 245 STGNIFVDTGVLRTLLPLEYHSNLKSVMSNMIKAQPVKGVGAEPGFSDVLCYNISSQ-PKFPEVTIHFR-GADVKLSPSN 322 (374)
Q Consensus 245 ~~~~~iiDTGt~~i~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~-~~~P~i~~~f~-g~~~~i~~~~ 322 (374)
....+++||||++++||.++|++|.+++...... ... .....+.|+..... ..+|.|+|+|+ |+.|.+++++
T Consensus 267 ~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~--~~~----~~~~~~~C~~~~~~~~~~P~i~~~f~~g~~~~l~~~~ 340 (398)
T KOG1339|consen 267 DGGGAIIDSGTSLTYLPTSAYNALREAIGAEVSV--VGT----DGEYFVPCFSISTSGVKLPDITFHFGGGAVFSLPPKN 340 (398)
T ss_pred CCCCEEEECCcceeeccHHHHHHHHHHHHhheec--ccc----CCceeeecccCCCCcccCCcEEEEECCCcEEEeCccc
Confidence 2588999999999999999999999998875311 111 22237899987511 12999999999 8999999999
Q ss_pred eEEEeCCCeE-EEEEEc-CC--CceeecccceeeeEEEEECC-CCEEEEee--CCCC
Q 048503 323 LFRNISDEIM-CSAFRG-GN--ANIVYGRIMQINFLIGYDIE-QAMVSFKP--SRCT 372 (374)
Q Consensus 323 y~~~~~~~~~-C~~i~~-~~--~~~iLG~~fl~~~y~vfD~e-~~rigfa~--~~C~ 372 (374)
|++...+... |+++.. .. ..||||..||++++++||.. ++|||||+ ..|+
T Consensus 341 y~~~~~~~~~~Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 341 YLVEVSDGGGVCLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred eEEEECCCCCceeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 9998876444 999444 33 48999999999999999999 99999999 7786
No 14
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=9.2e-51 Score=381.55 Aligned_cols=281 Identities=38% Similarity=0.705 Sum_probs=232.4
Q ss_pred eEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCcCCCCCCCCCCCCCeeee
Q 048503 34 IYLMHLSIGTPPVDIFGSVDTGSDCTWTQCEPCPELDCFKQEPPLFDPKKSSTYNSISCSSSQCAVVTSNCSEGDCSYSF 113 (374)
Q Consensus 34 ~y~~~v~iGtP~Q~~~~~iDTgS~~twv~~~~c~~~~C~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~c~~~~~~~~~ 113 (374)
+|+++|.||||||++.|+|||||+++||.|.+ | |.|.+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~-----c-------------------------------------~~~~i 38 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQP-----C-------------------------------------CLYQV 38 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCC-----C-------------------------------------Ceeee
Confidence 59999999999999999999999999996543 3 47889
Q ss_pred EeCCCCCceeeEEEEEEEEEEEecCCCCce-ecCcEEEeeeecCCCCCCCCCCcceEeecCCCCChhhhhhhccccCcce
Q 048503 114 LYGRGAYASFSSGNLATETLTFNSTSGLPV-EMPNVIFGCGHKNLASPTSDSKQTGIIGLGPGNSSLISQMGTSIAGKFS 192 (374)
Q Consensus 114 ~y~~g~~~~~~~G~~~~D~v~i~~~~~~~~-~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~~~~~Fs 192 (374)
.|++| +.+.|.+++|+|+|++ . .++++.|||+..... .+ ...+||||||+...+++.|+.....++||
T Consensus 39 ~Yg~G---s~~~G~~~~D~v~ig~-----~~~~~~~~Fg~~~~~~~--~~-~~~~GilGLg~~~~s~~~ql~~~~~~~FS 107 (299)
T cd05472 39 SYGDG---SYTTGDLATDTLTLGS-----SDVVPGFAFGCGHDNEG--LF-GGAAGLLGLGRGKLSLPSQTASSYGGVFS 107 (299)
T ss_pred EeCCC---ceEEEEEEEEEEEeCC-----CCccCCEEEECCccCCC--cc-CCCCEEEECCCCcchHHHHhhHhhcCceE
Confidence 99999 8778999999999998 5 788999999998765 44 47899999999999999998776789999
Q ss_pred ecccCC---CcceEEEcCCCC-CCCeeeeeeeeC----CceeEEEeEEEECCEEEEee--eCCCCcEEEecCcceeecCh
Q 048503 193 YCLPDQ---GSSKINFGGIVA-GAGVVSTPLIIR----DHYYLSLEAISVGNQRLEFV--SSSTGNIFVDTGVLRTLLPL 262 (374)
Q Consensus 193 ~~l~~~---~~G~l~~Gg~~~-~~~l~~~p~~~~----~~w~v~l~~i~v~~~~~~~~--~~~~~~~iiDTGt~~i~lp~ 262 (374)
+||.+. ..|.|+|||... .+++.|+|++.. .+|.|++.+|+|+++.+..+ ......++|||||++++||+
T Consensus 108 ~~L~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~ 187 (299)
T cd05472 108 YCLPDRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPP 187 (299)
T ss_pred EEccCCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCH
Confidence 999763 479999999433 348999999875 48999999999999987531 12346799999999999999
Q ss_pred HHHHHHHHHHHhhhccCcccCCCCCCCccccceeeccC--CCCCCeEEEEEe-CceEEECCCceEEEe-CCCeEEEEEEc
Q 048503 263 EYHSNLKSVMSNMIKAQPVKGVGAEPGFSDVLCYNISS--QPKFPEVTIHFR-GADVKLSPSNLFRNI-SDEIMCSAFRG 338 (374)
Q Consensus 263 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~--~~~~P~i~~~f~-g~~~~i~~~~y~~~~-~~~~~C~~i~~ 338 (374)
+++++|.+++.+.+....... .......|+.... ...+|+|+|+|+ +.+++|+|++|++.. ..+..|+++..
T Consensus 188 ~~~~~l~~~l~~~~~~~~~~~----~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~~~C~~~~~ 263 (299)
T cd05472 188 SAYAALRDAFRAAMAAYPRAP----GFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFAG 263 (299)
T ss_pred HHHHHHHHHHHHHhccCCCCC----CCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecCCCCEEEEEeC
Confidence 999999999987654321111 2221234875421 137999999998 899999999999843 44678998766
Q ss_pred C---CCceeecccceeeeEEEEECCCCEEEEeeCCC
Q 048503 339 G---NANIVYGRIMQINFLIGYDIEQAMVSFKPSRC 371 (374)
Q Consensus 339 ~---~~~~iLG~~fl~~~y~vfD~e~~rigfa~~~C 371 (374)
. ++.||||..|||++|+|||++++|||||+++|
T Consensus 264 ~~~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 264 TSDDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred CCCCCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 5 36799999999999999999999999999999
No 15
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=8.3e-51 Score=396.26 Aligned_cols=300 Identities=19% Similarity=0.344 Sum_probs=244.4
Q ss_pred cccceeeeeCceEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCcCCCCCC
Q 048503 23 IYQAEIISVDDIYLMHLSIGTPPVDIFGSVDTGSDCTWTQCEPCPELDCFKQEPPLFDPKKSSTYNSISCSSSQCAVVTS 102 (374)
Q Consensus 23 ~~~~~~~~~~~~y~~~v~iGtP~Q~~~~~iDTgS~~twv~~~~c~~~~C~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~ 102 (374)
...++.++.+.+|+++|+||||+|+++|+|||||+++||++..|....| +.++.|||++|+|++..+
T Consensus 127 ~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C--~~~~~yd~s~SsT~~~~~----------- 193 (450)
T PTZ00013 127 DVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGC--SIKNLYDSSKSKSYEKDG----------- 193 (450)
T ss_pred CceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCcccc--ccCCCccCccCcccccCC-----------
Confidence 4456678899999999999999999999999999999999999986688 677899999999999876
Q ss_pred CCCCCCCeeeeEeCCCCCceeeEEEEEEEEEEEecCCCCceecCcEEEeeeecCCCC-CCC-CCCcceEeecCCCCCh--
Q 048503 103 NCSEGDCSYSFLYGRGAYASFSSGNLATETLTFNSTSGLPVEMPNVIFGCGHKNLAS-PTS-DSKQTGIIGLGPGNSS-- 178 (374)
Q Consensus 103 ~c~~~~~~~~~~y~~g~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~-~~~-~~~~~GilGLg~~~~s-- 178 (374)
+.+.+.|++| + +.|.++.|+|++++ +.+. +.|+++.+.... +.| ...+|||||||+...+
T Consensus 194 ------~~~~i~YG~G---s-v~G~~~~Dtv~iG~-----~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~ 257 (450)
T PTZ00013 194 ------TKVDITYGSG---T-VKGFFSKDLVTLGH-----LSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIG 257 (450)
T ss_pred ------cEEEEEECCc---e-EEEEEEEEEEEECC-----EEEc-cEEEEEEeccccccceecccccceecccCCccccc
Confidence 8999999999 7 56999999999998 7876 578887655321 123 4578999999998654
Q ss_pred ----hhhhhhc---cccCcceecccCC--CcceEEEcC----CCCCCCeeeeeeeeCCceeEEEeEEEECCEEEEeeeCC
Q 048503 179 ----LISQMGT---SIAGKFSYCLPDQ--GSSKINFGG----IVAGAGVVSTPLIIRDHYYLSLEAISVGNQRLEFVSSS 245 (374)
Q Consensus 179 ----~~~ql~~---~~~~~Fs~~l~~~--~~G~l~~Gg----~~~~~~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~ 245 (374)
++.+|.. +..++||+||... ..|.|+||| .+.+ ++.|+|+....+|.|.++ +.++.... .
T Consensus 258 ~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G-~L~y~pv~~~~yW~I~l~-v~~G~~~~-----~ 330 (450)
T PTZ00013 258 SIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEG-NITYEKLNHDLYWQIDLD-VHFGKQTM-----Q 330 (450)
T ss_pred cCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCcccccc-ceEEEEcCcCceEEEEEE-EEECceec-----c
Confidence 4445544 3678999999754 479999999 3445 899999988889999998 66765432 3
Q ss_pred CCcEEEecCcceeecChHHHHHHHHHHHhhhccCcccCCCCCCCccccceeeccCCCCCCeEEEEEeCceEEECCCceEE
Q 048503 246 TGNIFVDTGVLRTLLPLEYHSNLKSVMSNMIKAQPVKGVGAEPGFSDVLCYNISSQPKFPEVTIHFRGADVKLSPSNLFR 325 (374)
Q Consensus 246 ~~~~iiDTGt~~i~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~i~~~~y~~ 325 (374)
...+++||||+++++|++++++|.+.+... .... ...+.++|+.. .+|+|+|.|+|.+++|+|++|+.
T Consensus 331 ~~~aIlDSGTSli~lP~~~~~~i~~~l~~~----~~~~----~~~y~~~C~~~----~lP~i~F~~~g~~~~L~p~~Yi~ 398 (450)
T PTZ00013 331 KANVIVDSGTTTITAPSEFLNKFFANLNVI----KVPF----LPFYVTTCDNK----EMPTLEFKSANNTYTLEPEYYMN 398 (450)
T ss_pred ccceEECCCCccccCCHHHHHHHHHHhCCe----ecCC----CCeEEeecCCC----CCCeEEEEECCEEEEECHHHhee
Confidence 567999999999999999999887776432 1111 12237799863 78999999999999999999987
Q ss_pred Ee--CCCeEEEE-EEcCC---CceeecccceeeeEEEEECCCCEEEEeeCC
Q 048503 326 NI--SDEIMCSA-FRGGN---ANIVYGRIMQINFLIGYDIEQAMVSFKPSR 370 (374)
Q Consensus 326 ~~--~~~~~C~~-i~~~~---~~~iLG~~fl~~~y~vfD~e~~rigfa~~~ 370 (374)
.. .++..|++ +.+.+ +.||||.+|||++|+|||++++|||||+++
T Consensus 399 ~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 399 PLLDVDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred hhccCCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 53 23568986 76543 689999999999999999999999999985
No 16
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=2.5e-48 Score=374.49 Aligned_cols=304 Identities=23% Similarity=0.356 Sum_probs=232.2
Q ss_pred ceEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCcCCCCCCCCCCCCCeee
Q 048503 33 DIYLMHLSIGTPPVDIFGSVDTGSDCTWTQCEPCPELDCFKQEPPLFDPKKSSTYNSISCSSSQCAVVTSNCSEGDCSYS 112 (374)
Q Consensus 33 ~~y~~~v~iGtP~Q~~~~~iDTgS~~twv~~~~c~~~~C~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~c~~~~~~~~ 112 (374)
..|+++|.||||+|+|.|+|||||+++||++..|. ..++.|||++|+|++..+ +.++
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~------~~~~~f~~~~SsT~~~~~-----------------~~~~ 58 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHP------FIHTYFHRELSSTYRDLG-----------------KGVT 58 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCc------cccccCCchhCcCcccCC-----------------ceEE
Confidence 36999999999999999999999999999998764 356789999999999887 8999
Q ss_pred eEeCCCCCceeeEEEEEEEEEEEecCCCCceecCcEEEeeeecCCCCCCC--CCCcceEeecCCCCC------------h
Q 048503 113 FLYGRGAYASFSSGNLATETLTFNSTSGLPVEMPNVIFGCGHKNLASPTS--DSKQTGIIGLGPGNS------------S 178 (374)
Q Consensus 113 ~~y~~g~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~~~--~~~~~GilGLg~~~~------------s 178 (374)
+.|++| +. .|.+++|+|+|++... ..+ .+.|+++..... .| ...+|||||||+..+ +
T Consensus 59 i~Yg~G---s~-~G~~~~D~v~ig~~~~--~~~-~~~~~~~~~~~~--~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~ 129 (364)
T cd05473 59 VPYTQG---SW-EGELGTDLVSIPKGPN--VTF-RANIAAITESEN--FFLNGSNWEGILGLAYAELARPDSSVEPFFDS 129 (364)
T ss_pred EEECcc---eE-EEEEEEEEEEECCCCc--cce-EEeeEEEecccc--ceecccccceeeeecccccccCCCCCCCHHHH
Confidence 999999 76 6999999999986211 121 133555554443 33 236899999998765 2
Q ss_pred hhhhhhccccCcceecccC---------C--CcceEEEcC----CCCCCCeeeeeeeeCCceeEEEeEEEECCEEEEeee
Q 048503 179 LISQMGTSIAGKFSYCLPD---------Q--GSSKINFGG----IVAGAGVVSTPLIIRDHYYLSLEAISVGNQRLEFVS 243 (374)
Q Consensus 179 ~~~ql~~~~~~~Fs~~l~~---------~--~~G~l~~Gg----~~~~~~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~ 243 (374)
+++|.. ..++||++|+. . ..|.|+||| ++.+ ++.|+|+....+|.|.+++|+|+++.+..+.
T Consensus 130 l~~q~~--~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g-~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~ 206 (364)
T cd05473 130 LVKQTG--IPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKG-DIWYTPIREEWYYEVIILKLEVGGQSLNLDC 206 (364)
T ss_pred HHhccC--CccceEEEecccccccccccccCCCcEEEeCCcCHhhcCC-CceEEecCcceeEEEEEEEEEECCEeccccc
Confidence 444422 45799998742 1 369999999 3445 8999999988899999999999998876421
Q ss_pred C--CCCcEEEecCcceeecChHHHHHHHHHHHhhhccCcccCCCCCCCccccceeeccCC--CCCCeEEEEEeC------
Q 048503 244 S--STGNIFVDTGVLRTLLPLEYHSNLKSVMSNMIKAQPVKGVGAEPGFSDVLCYNISSQ--PKFPEVTIHFRG------ 313 (374)
Q Consensus 244 ~--~~~~~iiDTGt~~i~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~--~~~P~i~~~f~g------ 313 (374)
. ....++|||||++++||++++++|.+++.++........ + ......++|+..... ..+|+|+|+|+|
T Consensus 207 ~~~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~-~-~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~ 284 (364)
T cd05473 207 KEYNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPD-G-FWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQS 284 (364)
T ss_pred ccccCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCc-c-ccCcceeecccccCchHhhCCcEEEEEccCCCCce
Confidence 1 124699999999999999999999999987643211111 0 001114689864321 258999999975
Q ss_pred ceEEECCCceEEEeC---CCeEEEE--EEcCCCceeecccceeeeEEEEECCCCEEEEeeCCCCC
Q 048503 314 ADVKLSPSNLFRNIS---DEIMCSA--FRGGNANIVYGRIMQINFLIGYDIEQAMVSFKPSRCTN 373 (374)
Q Consensus 314 ~~~~i~~~~y~~~~~---~~~~C~~--i~~~~~~~iLG~~fl~~~y~vfD~e~~rigfa~~~C~~ 373 (374)
.++.|+|++|+.... ....|+. +....+.||||..|||++|+|||.+++|||||+++|..
T Consensus 285 ~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~ 349 (364)
T cd05473 285 FRITILPQLYLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAE 349 (364)
T ss_pred EEEEECHHHhhhhhccCCCcceeeEEeeecCCCceEEeeeeEcceEEEEECCCCEEeeEeccccc
Confidence 368999999987642 2457975 43445789999999999999999999999999999974
No 17
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.3e-47 Score=355.43 Aligned_cols=255 Identities=29% Similarity=0.545 Sum_probs=214.6
Q ss_pred ceEEEEEEecCCCceEEEEEEcCCCceeEeCC-CCCCCCCCCCCCCCCCCCCCCCCcccCCCCCcCCCCCCCCCCCCCee
Q 048503 33 DIYLMHLSIGTPPVDIFGSVDTGSDCTWTQCE-PCPELDCFKQEPPLFDPKKSSTYNSISCSSSQCAVVTSNCSEGDCSY 111 (374)
Q Consensus 33 ~~y~~~v~iGtP~Q~~~~~iDTgS~~twv~~~-~c~~~~C~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~c~~~~~~~ 111 (374)
++|+++|.||||+|++.|++||||+++||+|. .|. .| . |.|
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~--~c-------------------~-----------------c~~ 42 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCT--GC-------------------Q-----------------CDY 42 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCC--CC-------------------c-----------------Ccc
Confidence 57999999999999999999999999999873 454 44 1 789
Q ss_pred eeEeCCCCCceeeEEEEEEEEEEEecCCCCceecCcEEEeeeecCCCCCCC-CCCcceEeecCCCCChhhhhhhcc--cc
Q 048503 112 SFLYGRGAYASFSSGNLATETLTFNSTSGLPVEMPNVIFGCGHKNLASPTS-DSKQTGIIGLGPGNSSLISQMGTS--IA 188 (374)
Q Consensus 112 ~~~y~~g~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~~~-~~~~~GilGLg~~~~s~~~ql~~~--~~ 188 (374)
.+.|+++ +.+.|.+++|+|+++..++. ..+.++.|||+........+ ....+||||||+...++++||... .+
T Consensus 43 ~i~Ygd~---~~~~G~~~~D~v~~~~~~~~-~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~ 118 (273)
T cd05475 43 EIEYADG---GSSMGVLVTDIFSLKLTNGS-RAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIK 118 (273)
T ss_pred EeEeCCC---CceEEEEEEEEEEEeecCCC-cccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcC
Confidence 9999988 67789999999999764332 46778999999876541011 457899999999999999998765 46
Q ss_pred CcceecccCCCcceEEEcC--CCCCCCeeeeeeeeC---CceeEEEeEEEECCEEEEeeeCCCCcEEEecCcceeecChH
Q 048503 189 GKFSYCLPDQGSSKINFGG--IVAGAGVVSTPLIIR---DHYYLSLEAISVGNQRLEFVSSSTGNIFVDTGVLRTLLPLE 263 (374)
Q Consensus 189 ~~Fs~~l~~~~~G~l~~Gg--~~~~~~l~~~p~~~~---~~w~v~l~~i~v~~~~~~~~~~~~~~~iiDTGt~~i~lp~~ 263 (374)
++||+||.+...|.|+||+ .+.+ ++.|+|+... .+|.|++.+|+|+++... .....++|||||+++++|++
T Consensus 119 ~~Fs~~l~~~~~g~l~~G~~~~~~g-~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~---~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 119 NVIGHCLSSNGGGFLFFGDDLVPSS-GVTWTPMRRESQKKHYSPGPASLLFNGQPTG---GKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred ceEEEEccCCCCeEEEECCCCCCCC-CeeecccccCCCCCeEEEeEeEEEECCEECc---CCCceEEEECCCceEEcCCc
Confidence 8999999876568999998 3334 7999999886 599999999999998643 45678999999999999998
Q ss_pred HHHHHHHHHHhhhccCcccCCCCCCCccccceeeccCCCCCCeEEEEEeC----ceEEECCCceEEEeCCCeEEEEEEcC
Q 048503 264 YHSNLKSVMSNMIKAQPVKGVGAEPGFSDVLCYNISSQPKFPEVTIHFRG----ADVKLSPSNLFRNISDEIMCSAFRGG 339 (374)
Q Consensus 264 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g----~~~~i~~~~y~~~~~~~~~C~~i~~~ 339 (374)
+| +|+|+|.|++ ++++|+|++|+....++..|+++...
T Consensus 195 ~y--------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~~~Cl~~~~~ 236 (273)
T cd05475 195 AY--------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEKGNVCLGILNG 236 (273)
T ss_pred cc--------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCCCCEEEEEecC
Confidence 65 4899999986 69999999999877667789995533
Q ss_pred -----CCceeecccceeeeEEEEECCCCEEEEeeCCC
Q 048503 340 -----NANIVYGRIMQINFLIGYDIEQAMVSFKPSRC 371 (374)
Q Consensus 340 -----~~~~iLG~~fl~~~y~vfD~e~~rigfa~~~C 371 (374)
++.||||..|||++|+|||.+++|||||+++|
T Consensus 237 ~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 237 SEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred CCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 25799999999999999999999999999999
No 18
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=5.2e-48 Score=359.15 Aligned_cols=262 Identities=25% Similarity=0.328 Sum_probs=217.3
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCcCCCCCCCCCCCCCeeeeE
Q 048503 35 YLMHLSIGTPPVDIFGSVDTGSDCTWTQCEPCPELDCFKQEPPLFDPKKSSTYNSISCSSSQCAVVTSNCSEGDCSYSFL 114 (374)
Q Consensus 35 y~~~v~iGtP~Q~~~~~iDTgS~~twv~~~~c~~~~C~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~c~~~~~~~~~~ 114 (374)
|+++|+||||+|++.|+|||||+++||++..|. .|..+.+..||+++|+|++... .+.+.+.
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~--~~~~~~~~~y~~~~Sst~~~~~----------------~~~~~i~ 62 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP--AAQQGGHKLYDPSKSSTAKLLP----------------GATWSIS 62 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC--chhhccCCcCCCccCccceecC----------------CcEEEEE
Confidence 789999999999999999999999999999998 5644667789999999998642 2799999
Q ss_pred eCCCCCceeeEEEEEEEEEEEecCCCCceecCcEEEeeeecCCCCCCC-CCCcceEeecCCCCCh---------hhhhhh
Q 048503 115 YGRGAYASFSSGNLATETLTFNSTSGLPVEMPNVIFGCGHKNLASPTS-DSKQTGIIGLGPGNSS---------LISQMG 184 (374)
Q Consensus 115 y~~g~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~~~-~~~~~GilGLg~~~~s---------~~~ql~ 184 (374)
|++| +.+.|.++.|+|.|++ +.++++.||++...... .+ ...++||||||+...+ +..+|.
T Consensus 63 Y~~G---~~~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~-~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~ 133 (278)
T cd06097 63 YGDG---SSASGIVYTDTVSIGG-----VEVPNQAIELATAVSAS-FFSDTASDGLLGLAFSSINTVQPPKQKTFFENAL 133 (278)
T ss_pred eCCC---CeEEEEEEEEEEEECC-----EEECCeEEEEEeecCcc-ccccccccceeeeccccccccccCCCCCHHHHHH
Confidence 9999 7678999999999998 89999999999987642 23 5689999999987553 233333
Q ss_pred cc-ccCcceecccCCCcceEEEcC----CCCCCCeeeeeeee-CCceeEEEeEEEECCEEEEeeeCCCCcEEEecCccee
Q 048503 185 TS-IAGKFSYCLPDQGSSKINFGG----IVAGAGVVSTPLII-RDHYYLSLEAISVGNQRLEFVSSSTGNIFVDTGVLRT 258 (374)
Q Consensus 185 ~~-~~~~Fs~~l~~~~~G~l~~Gg----~~~~~~l~~~p~~~-~~~w~v~l~~i~v~~~~~~~~~~~~~~~iiDTGt~~i 258 (374)
.. .+++||++|.+...|.|+||| ++.+ ++.|+|+.. ..+|.|.+++|+|+++.... .....++|||||+++
T Consensus 134 ~~~~~~~Fs~~l~~~~~G~l~fGg~D~~~~~g-~l~~~pi~~~~~~w~v~l~~i~v~~~~~~~--~~~~~~iiDSGTs~~ 210 (278)
T cd06097 134 SSLDAPLFTADLRKAAPGFYTFGYIDESKYKG-EISWTPVDNSSGFWQFTSTSYTVGGDAPWS--RSGFSAIADTGTTLI 210 (278)
T ss_pred HhccCceEEEEecCCCCcEEEEeccChHHcCC-ceEEEEccCCCcEEEEEEeeEEECCcceee--cCCceEEeecCCchh
Confidence 22 368999999865589999999 3445 899999987 56999999999999984432 567889999999999
Q ss_pred ecChHHHHHHHHHHHhhhccCcccCCCCCCCccccceeeccCCCCCCeEEEEEeCceEEECCCceEEEeCCCeEEEEEEc
Q 048503 259 LLPLEYHSNLKSVMSNMIKAQPVKGVGAEPGFSDVLCYNISSQPKFPEVTIHFRGADVKLSPSNLFRNISDEIMCSAFRG 338 (374)
Q Consensus 259 ~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~i~~~~y~~~~~~~~~C~~i~~ 338 (374)
++|.+++++|.+++.. ...... ...+.++|+. .+|+|+|+|
T Consensus 211 ~lP~~~~~~l~~~l~g---~~~~~~----~~~~~~~C~~-----~~P~i~f~~--------------------------- 251 (278)
T cd06097 211 LLPDAIVEAYYSQVPG---AYYDSE----YGGWVFPCDT-----TLPDLSFAV--------------------------- 251 (278)
T ss_pred cCCHHHHHHHHHhCcC---CcccCC----CCEEEEECCC-----CCCCEEEEE---------------------------
Confidence 9999999999777632 222212 2334889995 489999998
Q ss_pred CCCceeecccceeeeEEEEECCCCEEEEee
Q 048503 339 GNANIVYGRIMQINFLIGYDIEQAMVSFKP 368 (374)
Q Consensus 339 ~~~~~iLG~~fl~~~y~vfD~e~~rigfa~ 368 (374)
.||||.+|||++|+|||++++|||||+
T Consensus 252 ---~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 ---FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred ---EEEEcchhhCceeEEEcCCCceeeecC
Confidence 799999999999999999999999995
No 19
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=8.3e-49 Score=370.93 Aligned_cols=291 Identities=26% Similarity=0.497 Sum_probs=245.7
Q ss_pred eEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCC-CCCCCCCCCCCCCCCCCCcccCCCCCcCCCCCCCCCCCCCeee
Q 048503 34 IYLMHLSIGTPPVDIFGSVDTGSDCTWTQCEPCPEL-DCFKQEPPLFDPKKSSTYNSISCSSSQCAVVTSNCSEGDCSYS 112 (374)
Q Consensus 34 ~y~~~v~iGtP~Q~~~~~iDTgS~~twv~~~~c~~~-~C~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~c~~~~~~~~ 112 (374)
+|+++|+||||+|+++|++||||+++||++..|... .| .....|++.+|+|++... +.+.
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~--~~~~~y~~~~S~t~~~~~-----------------~~~~ 61 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSC--ASSGFYNPSKSSTFSNQG-----------------KPFS 61 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHH--CTSC-BBGGGSTTEEEEE-----------------EEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceecccccccc--ccccccccccccccccce-----------------eeee
Confidence 599999999999999999999999999999998732 35 577899999999999876 8899
Q ss_pred eEeCCCCCceeeEEEEEEEEEEEecCCCCceecCcEEEeeeecCCCCCCC-CCCcceEeecCCCC-------Chhhhhhh
Q 048503 113 FLYGRGAYASFSSGNLATETLTFNSTSGLPVEMPNVIFGCGHKNLASPTS-DSKQTGIIGLGPGN-------SSLISQMG 184 (374)
Q Consensus 113 ~~y~~g~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~~~-~~~~~GilGLg~~~-------~s~~~ql~ 184 (374)
+.|++| . ++|.++.|+|.|++ +.+.++.||++...... .+ ...++||||||+.. .+++.+|.
T Consensus 62 ~~y~~g---~-~~G~~~~D~v~ig~-----~~~~~~~f~~~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~ 131 (317)
T PF00026_consen 62 ISYGDG---S-VSGNLVSDTVSIGG-----LTIPNQTFGLADSYSGD-PFSPIPFDGILGLGFPSLSSSSTYPTFLDQLV 131 (317)
T ss_dssp EEETTE---E-EEEEEEEEEEEETT-----EEEEEEEEEEEEEEESH-HHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHH
T ss_pred eeccCc---c-cccccccceEeeee-----ccccccceecccccccc-ccccccccccccccCCcccccccCCcceecch
Confidence 999999 8 78999999999999 89999999999996441 22 57899999999753 23555655
Q ss_pred cc---ccCcceecccCC--CcceEEEcC----CCCCCCeeeeeeeeCCceeEEEeEEEECCEEEEeeeCCCCcEEEecCc
Q 048503 185 TS---IAGKFSYCLPDQ--GSSKINFGG----IVAGAGVVSTPLIIRDHYYLSLEAISVGNQRLEFVSSSTGNIFVDTGV 255 (374)
Q Consensus 185 ~~---~~~~Fs~~l~~~--~~G~l~~Gg----~~~~~~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~iiDTGt 255 (374)
.. .+++||++|.+. ..|.|+||| ++.+ ++.|+|+....+|.+.+.+|.+++..... .....++||||+
T Consensus 132 ~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g-~~~~~~~~~~~~w~v~~~~i~i~~~~~~~--~~~~~~~~Dtgt 208 (317)
T PF00026_consen 132 QQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDG-DLVWVPLVSSGYWSVPLDSISIGGESVFS--SSGQQAILDTGT 208 (317)
T ss_dssp HTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEES-EEEEEEBSSTTTTEEEEEEEEETTEEEEE--EEEEEEEEETTB
T ss_pred hhccccccccceeeeecccccchheeeccccccccC-ceeccCccccccccccccccccccccccc--ccceeeeccccc
Confidence 55 679999999986 259999999 4555 89999999888999999999999993332 445679999999
Q ss_pred ceeecChHHHHHHHHHHHhhhccCcccCCCCCCCccccceeeccCCCCCCeEEEEEeCceEEECCCceEEEeCCC--eEE
Q 048503 256 LRTLLPLEYHSNLKSVMSNMIKAQPVKGVGAEPGFSDVLCYNISSQPKFPEVTIHFRGADVKLSPSNLFRNISDE--IMC 333 (374)
Q Consensus 256 ~~i~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~i~~~~y~~~~~~~--~~C 333 (374)
+++++|.+++++|++.+...... ..+.++|.... .+|.|+|.|++.+|+|+|++|+...... ..|
T Consensus 209 ~~i~lp~~~~~~i~~~l~~~~~~----------~~~~~~c~~~~---~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C 275 (317)
T PF00026_consen 209 SYIYLPRSIFDAIIKALGGSYSD----------GVYSVPCNSTD---SLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYC 275 (317)
T ss_dssp SSEEEEHHHHHHHHHHHTTEEEC----------SEEEEETTGGG---GSEEEEEEETTEEEEEEHHHHEEEESSTTSSEE
T ss_pred ccccccchhhHHHHhhhcccccc----------eeEEEeccccc---ccceEEEeeCCEEEEecchHhccccccccccee
Confidence 99999999999998888654322 22388999876 7899999999999999999999988653 389
Q ss_pred EE-EEc---C--CCceeecccceeeeEEEEECCCCEEEEeeC
Q 048503 334 SA-FRG---G--NANIVYGRIMQINFLIGYDIEQAMVSFKPS 369 (374)
Q Consensus 334 ~~-i~~---~--~~~~iLG~~fl~~~y~vfD~e~~rigfa~~ 369 (374)
+. |.. . .+.+|||.+|||++|++||.|++|||||+|
T Consensus 276 ~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 276 YLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred EeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 88 776 2 378999999999999999999999999986
No 20
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=7.3e-47 Score=349.00 Aligned_cols=243 Identities=47% Similarity=0.828 Sum_probs=213.1
Q ss_pred eEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCcCCCCCCCCCCCCCeeee
Q 048503 34 IYLMHLSIGTPPVDIFGSVDTGSDCTWTQCEPCPELDCFKQEPPLFDPKKSSTYNSISCSSSQCAVVTSNCSEGDCSYSF 113 (374)
Q Consensus 34 ~y~~~v~iGtP~Q~~~~~iDTgS~~twv~~~~c~~~~C~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~c~~~~~~~~~ 113 (374)
+|+++|+||||+|++.|+|||||+++||+| |.+.+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------------------------~~~~~ 35 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---------------------------------------------CSYEY 35 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------------------------CceEe
Confidence 599999999999999999999999999953 36788
Q ss_pred EeCCCCCceeeEEEEEEEEEEEecCCCCce--ecCcEEEeeeecCCCCCCCCCCcceEeecCCCCChhhhhhhccccCcc
Q 048503 114 LYGRGAYASFSSGNLATETLTFNSTSGLPV--EMPNVIFGCGHKNLASPTSDSKQTGIIGLGPGNSSLISQMGTSIAGKF 191 (374)
Q Consensus 114 ~y~~g~~~~~~~G~~~~D~v~i~~~~~~~~--~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~~~~~F 191 (374)
.|++| +.+.|.+++|+|.|++ . .++++.|||+..... .....++||||||+...+++.||.... ++|
T Consensus 36 ~Y~dg---~~~~G~~~~D~v~~g~-----~~~~~~~~~Fg~~~~~~~--~~~~~~~GIlGLg~~~~s~~~ql~~~~-~~F 104 (265)
T cd05476 36 SYGDG---SSTSGVLATETFTFGD-----SSVSVPNVAFGCGTDNEG--GSFGGADGILGLGRGPLSLVSQLGSTG-NKF 104 (265)
T ss_pred EeCCC---ceeeeeEEEEEEEecC-----CCCccCCEEEEecccccC--CccCCCCEEEECCCCcccHHHHhhccc-Cee
Confidence 89988 7888999999999998 6 788999999998764 235689999999999999999987655 799
Q ss_pred eecccCC----CcceEEEcCCCC--CCCeeeeeeeeC----CceeEEEeEEEECCEEEEee-------eCCCCcEEEecC
Q 048503 192 SYCLPDQ----GSSKINFGGIVA--GAGVVSTPLIIR----DHYYLSLEAISVGNQRLEFV-------SSSTGNIFVDTG 254 (374)
Q Consensus 192 s~~l~~~----~~G~l~~Gg~~~--~~~l~~~p~~~~----~~w~v~l~~i~v~~~~~~~~-------~~~~~~~iiDTG 254 (374)
++||.+. ..|+|+|||... .+++.|+|++.. .+|.|.+++|+|+++.+.++ ......++||||
T Consensus 105 s~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTG 184 (265)
T cd05476 105 SYCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSG 184 (265)
T ss_pred EEEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCC
Confidence 9999762 579999999444 348999999884 59999999999999987521 245678999999
Q ss_pred cceeecChHHHHHHHHHHHhhhccCcccCCCCCCCccccceeeccCCCCCCeEEEEEe-CceEEECCCceEEEeCCCeEE
Q 048503 255 VLRTLLPLEYHSNLKSVMSNMIKAQPVKGVGAEPGFSDVLCYNISSQPKFPEVTIHFR-GADVKLSPSNLFRNISDEIMC 333 (374)
Q Consensus 255 t~~i~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~-g~~~~i~~~~y~~~~~~~~~C 333 (374)
|++++||++++ |+|+|.|+ +.++.|++++|+....++..|
T Consensus 185 Ts~~~lp~~~~---------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~~~~~C 225 (265)
T cd05476 185 TTLTYLPDPAY---------------------------------------PDLTLHFDGGADLELPPENYFVDVGEGVVC 225 (265)
T ss_pred CcceEcCcccc---------------------------------------CCEEEEECCCCEEEeCcccEEEECCCCCEE
Confidence 99999999865 78999999 899999999999977677899
Q ss_pred EEEEcC--CCceeecccceeeeEEEEECCCCEEEEeeCCC
Q 048503 334 SAFRGG--NANIVYGRIMQINFLIGYDIEQAMVSFKPSRC 371 (374)
Q Consensus 334 ~~i~~~--~~~~iLG~~fl~~~y~vfD~e~~rigfa~~~C 371 (374)
+++... .+.||||.+|||++|++||.+++|||||+++|
T Consensus 226 ~~~~~~~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 226 LAILSSSSGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred EEEecCCCCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 997765 48899999999999999999999999999999
No 21
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.8e-45 Score=352.65 Aligned_cols=306 Identities=25% Similarity=0.448 Sum_probs=242.8
Q ss_pred ecCCCce-EEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCcCCCCC-------------CCCCC
Q 048503 41 IGTPPVD-IFGSVDTGSDCTWTQCEPCPELDCFKQEPPLFDPKKSSTYNSISCSSSQCAVVT-------------SNCSE 106 (374)
Q Consensus 41 iGtP~Q~-~~~~iDTgS~~twv~~~~c~~~~C~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~-------------~~c~~ 106 (374)
+|||-.+ +.+++||||+++||.|. |.+|+|+....|.+..|.... +.|.+
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~----------------~~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~ 65 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCD----------------AGHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGN 65 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCC----------------CCCcCCCCccCcCChhhccccccCCCccccCCCCCCCCC
Confidence 5888667 99999999999999543 246789999999999997543 25655
Q ss_pred CCCeeeeE-eCCCCCceeeEEEEEEEEEEEecCCCCc---eecCcEEEeeeecCCCCCCCCCCcceEeecCCCCChhhhh
Q 048503 107 GDCSYSFL-YGRGAYASFSSGNLATETLTFNSTSGLP---VEMPNVIFGCGHKNLASPTSDSKQTGIIGLGPGNSSLISQ 182 (374)
Q Consensus 107 ~~~~~~~~-y~~g~~~~~~~G~~~~D~v~i~~~~~~~---~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~q 182 (374)
+.|.|... |++| +...|.+++|+|+|+..++.. ..+.++.|||+...... .+...+|||||||+...+++.|
T Consensus 66 ~~C~y~~~~y~~g---s~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~-~~~~~~dGIlGLg~~~lSl~sq 141 (362)
T cd05489 66 NTCTAHPYNPVTG---ECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLK-GLPPGAQGVAGLGRSPLSLPAQ 141 (362)
T ss_pred CcCeeEccccccC---cEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCccccc-CCccccccccccCCCccchHHH
Confidence 56888665 7788 788899999999998655433 46889999999886431 2345689999999999999999
Q ss_pred hhcc--ccCcceecccCC--CcceEEEcCCC---------CCCCeeeeeeeeC----CceeEEEeEEEECCEEEEee---
Q 048503 183 MGTS--IAGKFSYCLPDQ--GSSKINFGGIV---------AGAGVVSTPLIIR----DHYYLSLEAISVGNQRLEFV--- 242 (374)
Q Consensus 183 l~~~--~~~~Fs~~l~~~--~~G~l~~Gg~~---------~~~~l~~~p~~~~----~~w~v~l~~i~v~~~~~~~~--- 242 (374)
|... ..++||+||.+. ..|.|+||+.. ..+.+.|+|++.+ .+|.|.+++|+||++.+.++
T Consensus 142 l~~~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~ 221 (362)
T cd05489 142 LASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTL 221 (362)
T ss_pred hhhhcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchh
Confidence 8765 358999999864 47999999922 1247999999976 49999999999999987542
Q ss_pred ----eCCCCcEEEecCcceeecChHHHHHHHHHHHhhhccCcccCCCCCCCccccceeeccC------CCCCCeEEEEEe
Q 048503 243 ----SSSTGNIFVDTGVLRTLLPLEYHSNLKSVMSNMIKAQPVKGVGAEPGFSDVLCYNISS------QPKFPEVTIHFR 312 (374)
Q Consensus 243 ----~~~~~~~iiDTGt~~i~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~------~~~~P~i~~~f~ 312 (374)
......++|||||++++||.++|++|.+++.+++....... . .......|+.... ...+|+|+|+|+
T Consensus 222 ~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~-~--~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~ 298 (362)
T cd05489 222 SANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVP-A--AAVFPELCYPASALGNTRLGYAVPAIDLVLD 298 (362)
T ss_pred ccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCC-C--CCCCcCccccCCCcCCcccccccceEEEEEe
Confidence 12345799999999999999999999999988765332211 0 0111247776321 247999999998
Q ss_pred C--ceEEECCCceEEEeCCCeEEEEEEcCC----CceeecccceeeeEEEEECCCCEEEEeeC
Q 048503 313 G--ADVKLSPSNLFRNISDEIMCSAFRGGN----ANIVYGRIMQINFLIGYDIEQAMVSFKPS 369 (374)
Q Consensus 313 g--~~~~i~~~~y~~~~~~~~~C~~i~~~~----~~~iLG~~fl~~~y~vfD~e~~rigfa~~ 369 (374)
| .++.|+|++|+++..++..|++|.+.+ ..||||..|||++|++||.+++|||||+.
T Consensus 299 g~g~~~~l~~~ny~~~~~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 299 GGGVNWTIFGANSMVQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred CCCeEEEEcCCceEEEcCCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 6 999999999999887777899987653 47999999999999999999999999975
No 22
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=6.9e-46 Score=347.81 Aligned_cols=262 Identities=23% Similarity=0.400 Sum_probs=221.6
Q ss_pred ceEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCcCCCCCCCCCCCCCeee
Q 048503 33 DIYLMHLSIGTPPVDIFGSVDTGSDCTWTQCEPCPELDCFKQEPPLFDPKKSSTYNSISCSSSQCAVVTSNCSEGDCSYS 112 (374)
Q Consensus 33 ~~y~~~v~iGtP~Q~~~~~iDTgS~~twv~~~~c~~~~C~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~c~~~~~~~~ 112 (374)
..|+++|.||||+|++.++|||||+++||+ .|.
T Consensus 1 ~~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------------------------~~~ 33 (295)
T cd05474 1 TYYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------------------------DFS 33 (295)
T ss_pred CeEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------------------------eeE
Confidence 379999999999999999999999999993 357
Q ss_pred eEeCCCCCceeeEEEEEEEEEEEecCCCCceecCcEEEeeeecCCCCCCCCCCcceEeecCCCCC-----------hhhh
Q 048503 113 FLYGRGAYASFSSGNLATETLTFNSTSGLPVEMPNVIFGCGHKNLASPTSDSKQTGIIGLGPGNS-----------SLIS 181 (374)
Q Consensus 113 ~~y~~g~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~-----------s~~~ 181 (374)
+.|++| +.+.|.+++|+|.+++ ..++++.||++.+.. ..+||||||+... +++.
T Consensus 34 ~~Y~~g---~~~~G~~~~D~v~~g~-----~~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~s~~~ 98 (295)
T cd05474 34 ISYGDG---TSASGTWGTDTVSIGG-----ATVKNLQFAVANSTS-------SDVGVLGIGLPGNEATYGTGYTYPNFPI 98 (295)
T ss_pred EEeccC---CcEEEEEEEEEEEECC-----eEecceEEEEEecCC-------CCcceeeECCCCCcccccCCCcCCCHHH
Confidence 789997 6778999999999998 788999999999842 4689999999775 4777
Q ss_pred hhhcc---ccCcceecccCC--CcceEEEcC----CCCCCCeeeeeeeeC------CceeEEEeEEEECCEEEEee-eCC
Q 048503 182 QMGTS---IAGKFSYCLPDQ--GSSKINFGG----IVAGAGVVSTPLIIR------DHYYLSLEAISVGNQRLEFV-SSS 245 (374)
Q Consensus 182 ql~~~---~~~~Fs~~l~~~--~~G~l~~Gg----~~~~~~l~~~p~~~~------~~w~v~l~~i~v~~~~~~~~-~~~ 245 (374)
||... .+++||+||.+. ..|.|+||| ++.+ ++.|+|+... .+|.|.+++|.++++.+..+ ...
T Consensus 99 ~L~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g-~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~ 177 (295)
T cd05474 99 ALKKQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSG-DLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSK 177 (295)
T ss_pred HHHHCCcccceEEEEEeCCCCCCceeEEEeeeccceeec-eeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCC
Confidence 77654 568999999874 579999999 3444 8999999988 58999999999999875321 255
Q ss_pred CCcEEEecCcceeecChHHHHHHHHHHHhhhccCcccCCCCCCCccccceeeccCCCCCCeEEEEEeCceEEECCCceEE
Q 048503 246 TGNIFVDTGVLRTLLPLEYHSNLKSVMSNMIKAQPVKGVGAEPGFSDVLCYNISSQPKFPEVTIHFRGADVKLSPSNLFR 325 (374)
Q Consensus 246 ~~~~iiDTGt~~i~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~i~~~~y~~ 325 (374)
...++|||||++++||.+++++|++++.+..... ...+.++|+... . |+|+|+|+|.+++||+++|++
T Consensus 178 ~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~~--------~~~~~~~C~~~~---~-p~i~f~f~g~~~~i~~~~~~~ 245 (295)
T cd05474 178 NLPALLDSGTTLTYLPSDIVDAIAKQLGATYDSD--------EGLYVVDCDAKD---D-GSLTFNFGGATISVPLSDLVL 245 (295)
T ss_pred CccEEECCCCccEeCCHHHHHHHHHHhCCEEcCC--------CcEEEEeCCCCC---C-CEEEEEECCeEEEEEHHHhEe
Confidence 6789999999999999999999998886643221 223488999865 4 999999999999999999998
Q ss_pred EeC----CCeEEEE-EEcCC-CceeecccceeeeEEEEECCCCEEEEeeC
Q 048503 326 NIS----DEIMCSA-FRGGN-ANIVYGRIMQINFLIGYDIEQAMVSFKPS 369 (374)
Q Consensus 326 ~~~----~~~~C~~-i~~~~-~~~iLG~~fl~~~y~vfD~e~~rigfa~~ 369 (374)
+.. .+..|+. |.+.+ +.||||.+|||++|++||.+++|||||++
T Consensus 246 ~~~~~~~~~~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 246 PASTDDGGDGACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred ccccCCCCCCCeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 764 2567865 88776 79999999999999999999999999986
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=6.9e-43 Score=324.99 Aligned_cols=262 Identities=30% Similarity=0.564 Sum_probs=220.2
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCC--CCCCCCCCCcccCCCCCcCCCCCCCCCCCCCeee
Q 048503 35 YLMHLSIGTPPVDIFGSVDTGSDCTWTQCEPCPELDCFKQEPPL--FDPKKSSTYNSISCSSSQCAVVTSNCSEGDCSYS 112 (374)
Q Consensus 35 y~~~v~iGtP~Q~~~~~iDTgS~~twv~~~~c~~~~C~~~~~~~--y~~~~Sst~~~~~c~~~~c~~~~~~c~~~~~~~~ 112 (374)
|+++|.||+|+|++.|+|||||+++||+|..|. .|..+.... |++..|+++.... |.+.
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~--~~~~~~~~~~~~~~~~s~~~~~~~-----------------~~~~ 61 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCT--SCSCQKHPRFKYDSSKSSTYKDTG-----------------CTFS 61 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCC--ccccccCCCCccCccCCceeecCC-----------------CEEE
Confidence 789999999999999999999999999999998 443244443 7888888887765 8999
Q ss_pred eEeCCCCCceeeEEEEEEEEEEEecCCCCceecCcEEEeeeecCCCCCCC-CCCcceEeecCCCC------Chhhhhhhc
Q 048503 113 FLYGRGAYASFSSGNLATETLTFNSTSGLPVEMPNVIFGCGHKNLASPTS-DSKQTGIIGLGPGN------SSLISQMGT 185 (374)
Q Consensus 113 ~~y~~g~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~~~-~~~~~GilGLg~~~------~s~~~ql~~ 185 (374)
+.|++| .. .|.++.|+|.+++ ..+.++.||++..... .+ ....+||||||+.. .+++.||..
T Consensus 62 ~~Y~~g---~~-~g~~~~D~v~~~~-----~~~~~~~fg~~~~~~~--~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~ 130 (283)
T cd05471 62 ITYGDG---SV-TGGLGTDTVTIGG-----LTIPNQTFGCATSESG--DFSSSGFDGILGLGFPSLSVDGVPSFFDQLKS 130 (283)
T ss_pred EEECCC---eE-EEEEEEeEEEECC-----EEEeceEEEEEeccCC--cccccccceEeecCCcccccccCCCHHHHHHH
Confidence 999998 65 5999999999999 7889999999999875 33 57899999999988 678888877
Q ss_pred c---ccCcceecccCC----CcceEEEcCCCC---CCCeeeeeeee--CCceeEEEeEEEECCEEEEeeeCCCCcEEEec
Q 048503 186 S---IAGKFSYCLPDQ----GSSKINFGGIVA---GAGVVSTPLII--RDHYYLSLEAISVGNQRLEFVSSSTGNIFVDT 253 (374)
Q Consensus 186 ~---~~~~Fs~~l~~~----~~G~l~~Gg~~~---~~~l~~~p~~~--~~~w~v~l~~i~v~~~~~~~~~~~~~~~iiDT 253 (374)
. .+++||+||.+. ..|.|+|||... .+++.|+|++. ..+|.|.+++|.+++.... .......++|||
T Consensus 131 ~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~-~~~~~~~~iiDs 209 (283)
T cd05471 131 QGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVI-SSSGGGGAIVDS 209 (283)
T ss_pred CCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceee-ecCCCcEEEEec
Confidence 6 579999999873 689999999332 34899999999 5699999999999997411 136678999999
Q ss_pred CcceeecChHHHHHHHHHHHhhhccCcccCCCCCCCccccceeeccCCCCCCeEEEEEeCceEEECCCceEEEeCCCeEE
Q 048503 254 GVLRTLLPLEYHSNLKSVMSNMIKAQPVKGVGAEPGFSDVLCYNISSQPKFPEVTIHFRGADVKLSPSNLFRNISDEIMC 333 (374)
Q Consensus 254 Gt~~i~lp~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~i~~~~y~~~~~~~~~C 333 (374)
|+++++||.+++++|++++...... . .......|.... .+|+|+|+|
T Consensus 210 Gt~~~~lp~~~~~~l~~~~~~~~~~----~----~~~~~~~~~~~~---~~p~i~f~f---------------------- 256 (283)
T cd05471 210 GTSLIYLPSSVYDAILKALGAAVSS----S----DGGYGVDCSPCD---TLPDITFTF---------------------- 256 (283)
T ss_pred CCCCEeCCHHHHHHHHHHhCCcccc----c----CCcEEEeCcccC---cCCCEEEEE----------------------
Confidence 9999999999999999888766443 1 122255666555 899999999
Q ss_pred EEEEcCCCceeecccceeeeEEEEECCCCEEEEee
Q 048503 334 SAFRGGNANIVYGRIMQINFLIGYDIEQAMVSFKP 368 (374)
Q Consensus 334 ~~i~~~~~~~iLG~~fl~~~y~vfD~e~~rigfa~ 368 (374)
.+|||.+|||++|++||.+++|||||+
T Consensus 257 --------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 --------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred --------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 799999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.94 E-value=7.4e-27 Score=199.49 Aligned_cols=156 Identities=51% Similarity=0.857 Sum_probs=129.7
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCcCCCCCC---CC--CCCCC
Q 048503 35 YLMHLSIGTPPVDIFGSVDTGSDCTWTQCEPCPELDCFKQEPPLFDPKKSSTYNSISCSSSQCAVVTS---NC--SEGDC 109 (374)
Q Consensus 35 y~~~v~iGtP~Q~~~~~iDTgS~~twv~~~~c~~~~C~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~---~c--~~~~~ 109 (374)
|+++|.||||+|++.++|||||+.+|++ | ..+.|+|++|+|++...|.++.|..... .| .+..|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~--------C---~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C 69 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQ--------C---PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSC 69 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEE--------T-------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEc--------C---CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcc
Confidence 8999999999999999999999999994 4 5678999999999999999999987763 23 57899
Q ss_pred eeeeEeCCCCCceeeEEEEEEEEEEEecCCCCceecCcEEEeeeecCCCCCCCCCCcceEeecCCCCChhhhhhhccccC
Q 048503 110 SYSFLYGRGAYASFSSGNLATETLTFNSTSGLPVEMPNVIFGCGHKNLASPTSDSKQTGIIGLGPGNSSLISQMGTSIAG 189 (374)
Q Consensus 110 ~~~~~y~~g~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~~~~ 189 (374)
.|.+.|.++ +...|.+++|+|.++...+....+.++.|||+....+ .+ ...+||||||+...+|+.||+....+
T Consensus 70 ~y~~~y~~~---s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g--~~-~~~~GilGLg~~~~Sl~sQl~~~~~~ 143 (164)
T PF14543_consen 70 PYSQSYGDG---SSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSG--LF-YGADGILGLGRGPLSLPSQLASSSGN 143 (164)
T ss_dssp EEEEEETTT---EEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGT--SS-TTEEEEEE-SSSTTSHHHHHHHH--S
T ss_pred cceeecCCC---ccccCceEEEEEEecCCCCCCceeeeEEEEeeecccc--CC-cCCCcccccCCCcccHHHHHHHhcCC
Confidence 999999999 8999999999999998766557788999999999886 44 48999999999999999999888889
Q ss_pred cceecccC-C--CcceEEEcC
Q 048503 190 KFSYCLPD-Q--GSSKINFGG 207 (374)
Q Consensus 190 ~Fs~~l~~-~--~~G~l~~Gg 207 (374)
+||+||.. . ..|.|+||+
T Consensus 144 ~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 144 KFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp EEEEEB-S-SSSSEEEEEECS
T ss_pred eEEEECCCCCCCCCEEEEeCc
Confidence 99999988 2 789999996
No 25
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.88 E-value=6e-22 Score=157.77 Aligned_cols=107 Identities=35% Similarity=0.644 Sum_probs=92.6
Q ss_pred EEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCC-CCCCCCCCcccCCCCCcCCCCCCCCCCCCCeeeeEe
Q 048503 37 MHLSIGTPPVDIFGSVDTGSDCTWTQCEPCPELDCFKQEPPLF-DPKKSSTYNSISCSSSQCAVVTSNCSEGDCSYSFLY 115 (374)
Q Consensus 37 ~~v~iGtP~Q~~~~~iDTgS~~twv~~~~c~~~~C~~~~~~~y-~~~~Sst~~~~~c~~~~c~~~~~~c~~~~~~~~~~y 115 (374)
++|.||||+|++.|+|||||+++||.+..|. .|..+.+..| +|++|++++... +.|.+.|
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~--~~~~~~~~~~~~~~~sst~~~~~-----------------~~~~~~Y 61 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ--SLAIYSHSSYDDPSASSTYSDNG-----------------CTFSITY 61 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC--CcccccccccCCcCCCCCCCCCC-----------------cEEEEEe
Confidence 4799999999999999999999999999998 4533455566 999999999876 8999999
Q ss_pred CCCCCceeeEEEEEEEEEEEecCCCCceecCcEEEeeeecCCCCCCC-CCCcceEeec
Q 048503 116 GRGAYASFSSGNLATETLTFNSTSGLPVEMPNVIFGCGHKNLASPTS-DSKQTGIIGL 172 (374)
Q Consensus 116 ~~g~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~~~-~~~~~GilGL 172 (374)
++| +. .|.++.|+|.|++ +.++++.||++...... .+ ....+|||||
T Consensus 62 ~~g---~~-~g~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~-~~~~~~~~GilGL 109 (109)
T cd05470 62 GTG---SL-SGGLSTDTVSIGD-----IEVVGQAFGCATDEPGA-TFLPALFDGILGL 109 (109)
T ss_pred CCC---eE-EEEEEEEEEEECC-----EEECCEEEEEEEecCCc-cccccccccccCC
Confidence 999 75 4999999999998 88999999999998762 23 5688999998
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.87 E-value=1.1e-21 Score=167.41 Aligned_cols=141 Identities=36% Similarity=0.624 Sum_probs=112.3
Q ss_pred ceeEEEeEEEECCEEEEeeeC------CCCcEEEecCcceeecChHHHHHHHHHHHhhhccCcc---cCCCCCCCccccc
Q 048503 224 HYYLSLEAISVGNQRLEFVSS------STGNIFVDTGVLRTLLPLEYHSNLKSVMSNMIKAQPV---KGVGAEPGFSDVL 294 (374)
Q Consensus 224 ~w~v~l~~i~v~~~~~~~~~~------~~~~~iiDTGt~~i~lp~~~~~~i~~~l~~~~~~~~~---~~~~~~~~~~~~~ 294 (374)
.|.|.+.+|+||++.+.++.. ....++|||||++++||+++|+.|++++.+++..... .. .......
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~----~~~~~~~ 76 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAP----PFSGFDL 76 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE-------TT-S-
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccc----cCCCCCc
Confidence 488999999999999987622 3578999999999999999999999999999875421 12 3344778
Q ss_pred eeeccCC------CCCCeEEEEEe-CceEEECCCceEEEeCCCeEEEEEEcC----CCceeecccceeeeEEEEECCCCE
Q 048503 295 CYNISSQ------PKFPEVTIHFR-GADVKLSPSNLFRNISDEIMCSAFRGG----NANIVYGRIMQINFLIGYDIEQAM 363 (374)
Q Consensus 295 C~~~~~~------~~~P~i~~~f~-g~~~~i~~~~y~~~~~~~~~C~~i~~~----~~~~iLG~~fl~~~y~vfD~e~~r 363 (374)
|++.... ..+|+|+|+|. |.+++|+|++|++...++..|++|.++ ++..|||..+|++++++||.+++|
T Consensus 77 Cy~~~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~ 156 (161)
T PF14541_consen 77 CYNLSSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGR 156 (161)
T ss_dssp EEEGGCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTE
T ss_pred eeeccccccccccccCCeEEEEEeCCcceeeeccceeeeccCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCE
Confidence 9998761 48999999999 789999999999999988999998777 389999999999999999999999
Q ss_pred EEEee
Q 048503 364 VSFKP 368 (374)
Q Consensus 364 igfa~ 368 (374)
|||+|
T Consensus 157 igF~~ 161 (161)
T PF14541_consen 157 IGFAP 161 (161)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 99986
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.17 E-value=6.6e-06 Score=63.07 Aligned_cols=94 Identities=14% Similarity=0.159 Sum_probs=66.6
Q ss_pred ceEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCcCCCCCCCCCCCCCeee
Q 048503 33 DIYLMHLSIGTPPVDIFGSVDTGSDCTWTQCEPCPELDCFKQEPPLFDPKKSSTYNSISCSSSQCAVVTSNCSEGDCSYS 112 (374)
Q Consensus 33 ~~y~~~v~iGtP~Q~~~~~iDTgS~~twv~~~~c~~~~C~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~c~~~~~~~~ 112 (374)
+.|++++.|+ .+++++++|||++.+|+...... .+. . .. .. .....
T Consensus 1 ~~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~--~l~-----~-------~~-~~-----------------~~~~~ 46 (96)
T cd05483 1 GHFVVPVTIN--GQPVRFLLDTGASTTVISEELAE--RLG-----L-------PL-TL-----------------GGKVT 46 (96)
T ss_pred CcEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH--HcC-----C-------Cc-cC-----------------CCcEE
Confidence 3589999999 79999999999999999664322 110 0 00 11 13455
Q ss_pred eEeCCCCCceeeEEEEEEEEEEEecCCCCceecCcEEEeeeecCCCCCCCCCCcceEeecCC
Q 048503 113 FLYGRGAYASFSSGNLATETLTFNSTSGLPVEMPNVIFGCGHKNLASPTSDSKQTGIIGLGP 174 (374)
Q Consensus 113 ~~y~~g~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 174 (374)
....+| .........+.+++++ +.++++.+..+..... ..+||||+.+
T Consensus 47 ~~~~~G---~~~~~~~~~~~i~ig~-----~~~~~~~~~v~d~~~~------~~~gIlG~d~ 94 (96)
T cd05483 47 VQTANG---RVRAARVRLDSLQIGG-----ITLRNVPAVVLPGDAL------GVDGLLGMDF 94 (96)
T ss_pred EEecCC---CccceEEEcceEEECC-----cEEeccEEEEeCCccc------CCceEeChHH
Confidence 666777 6555666688999999 8888888877765432 5789999864
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.36 E-value=0.0014 Score=52.74 Aligned_cols=99 Identities=10% Similarity=0.117 Sum_probs=65.9
Q ss_pred eeeeCceEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCcCCCCCCCCCCC
Q 048503 28 IISVDDIYLMHLSIGTPPVDIFGSVDTGSDCTWTQCEPCPELDCFKQEPPLFDPKKSSTYNSISCSSSQCAVVTSNCSEG 107 (374)
Q Consensus 28 ~~~~~~~y~~~v~iGtP~Q~~~~~iDTgS~~twv~~~~c~~~~C~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~c~~~ 107 (374)
.-..++.|++++.|. .+++.++||||++.+.++...-. .. ..++.. ..
T Consensus 5 ~~~~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~--~L------gl~~~~------~~---------------- 52 (121)
T TIGR02281 5 AKDGDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQ--RL------GLDLNR------LG---------------- 52 (121)
T ss_pred EEcCCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH--Hc------CCCccc------CC----------------
Confidence 345678999999997 78999999999999988554322 01 111111 00
Q ss_pred CCeeeeEeCCCCCceeeEEEEEEEEEEEecCCCCceecCcEEEeeeecCCCCCCCCCCcceEeecCC
Q 048503 108 DCSYSFLYGRGAYASFSSGNLATETLTFNSTSGLPVEMPNVIFGCGHKNLASPTSDSKQTGIIGLGP 174 (374)
Q Consensus 108 ~~~~~~~y~~g~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 174 (374)
....+.=..| ......+.-|.+.+|+ +..+|+.+..+..... .+|+||+.+
T Consensus 53 -~~~~~~ta~G---~~~~~~~~l~~l~iG~-----~~~~nv~~~v~~~~~~-------~~~LLGm~f 103 (121)
T TIGR02281 53 -YTVTVSTANG---QIKAARVTLDRVAIGG-----IVVNDVDAMVAEGGAL-------SESLLGMSF 103 (121)
T ss_pred -ceEEEEeCCC---cEEEEEEEeCEEEECC-----EEEeCcEEEEeCCCcC-------CceEcCHHH
Confidence 2333333455 4443556889999999 8999999877653321 379999875
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=97.02 E-value=0.0054 Score=46.02 Aligned_cols=89 Identities=18% Similarity=0.221 Sum_probs=55.2
Q ss_pred EEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCcCCCCCCCCCCCCCeeeeEeC
Q 048503 37 MHLSIGTPPVDIFGSVDTGSDCTWTQCEPCPELDCFKQEPPLFDPKKSSTYNSISCSSSQCAVVTSNCSEGDCSYSFLYG 116 (374)
Q Consensus 37 ~~v~iGtP~Q~~~~~iDTgS~~twv~~~~c~~~~C~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~c~~~~~~~~~~y~ 116 (374)
+++.|+ .+++++++|||++.+.+.......... .+.... ....+.-.
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~~l~~--------~~~~~~-----------------------~~~~~~~~ 47 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAKKLGL--------KPRPKS-----------------------VPISVSGA 47 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHHHcCC--------CCcCCc-----------------------eeEEEEeC
Confidence 467787 789999999999998885553321111 111000 12333334
Q ss_pred CCCCceeeEEEEEEEEEEEecCCCCceecCcEEEeeeecCCCCCCCCCCcceEeecC
Q 048503 117 RGAYASFSSGNLATETLTFNSTSGLPVEMPNVIFGCGHKNLASPTSDSKQTGIIGLG 173 (374)
Q Consensus 117 ~g~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg 173 (374)
+| .........+.+.+++ ..+.+..+..... . ...+||||+-
T Consensus 48 ~g---~~~~~~~~~~~i~ig~-----~~~~~~~~~v~~~--~-----~~~~~iLG~d 89 (90)
T PF13650_consen 48 GG---SVTVYRGRVDSITIGG-----ITLKNVPFLVVDL--G-----DPIDGILGMD 89 (90)
T ss_pred CC---CEEEEEEEEEEEEECC-----EEEEeEEEEEECC--C-----CCCEEEeCCc
Confidence 55 4343556667899998 7887788766662 1 3578999975
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.72 E-value=0.04 Score=44.52 Aligned_cols=100 Identities=9% Similarity=0.064 Sum_probs=57.2
Q ss_pred EEECCEEEEeeeCCCCcEEEecCcceeecChHHHHHHHHHHHhhhccCc---ccCCCCCCCccccceeeccCCCCCCeEE
Q 048503 232 ISVGNQRLEFVSSSTGNIFVDTGVLRTLLPLEYHSNLKSVMSNMIKAQP---VKGVGAEPGFSDVLCYNISSQPKFPEVT 308 (374)
Q Consensus 232 i~v~~~~~~~~~~~~~~~iiDTGt~~i~lp~~~~~~i~~~l~~~~~~~~---~~~~~~~~~~~~~~C~~~~~~~~~P~i~ 308 (374)
+.|||..+ .+++|||++.+.++.+..+++ .-...... .... +.. ...+.. ......
T Consensus 21 ~~Ing~~~--------~~LvDTGAs~s~Is~~~a~~l----gl~~~~~~~~~~~~~---g~g-~~~~~g-----~~~~~~ 79 (124)
T cd05479 21 VEINGVPV--------KAFVDSGAQMTIMSKACAEKC----GLMRLIDKRFQGIAK---GVG-TQKILG-----RIHLAQ 79 (124)
T ss_pred EEECCEEE--------EEEEeCCCceEEeCHHHHHHc----CCccccCcceEEEEe---cCC-CcEEEe-----EEEEEE
Confidence 55677764 469999999999999977765 21110000 0000 000 011111 123344
Q ss_pred EEEeCceEEECCCceEEEeCCCeEEEEEEcC-CCceeecccceeeeEEEEECCCCEEEE
Q 048503 309 IHFRGADVKLSPSNLFRNISDEIMCSAFRGG-NANIVYGRIMQINFLIGYDIEQAMVSF 366 (374)
Q Consensus 309 ~~f~g~~~~i~~~~y~~~~~~~~~C~~i~~~-~~~~iLG~~fl~~~y~vfD~e~~rigf 366 (374)
+.+++..+.+ +++ +.+. +-..|||..||+.+-.+.|+++.+|-+
T Consensus 80 l~i~~~~~~~---~~~-----------Vl~~~~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 80 VKIGNLFLPC---SFT-----------VLEDDDVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred EEECCEEeee---EEE-----------EECCCCcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 4555544321 111 2222 467899999999999999999998853
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.53 E-value=0.14 Score=41.34 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=30.1
Q ss_pred eeeeCceEEEEEEecCCCceEEEEEEcCCCceeEeCCCC
Q 048503 28 IISVDDIYLMHLSIGTPPVDIFGSVDTGSDCTWTQCEPC 66 (374)
Q Consensus 28 ~~~~~~~y~~~v~iGtP~Q~~~~~iDTgS~~twv~~~~c 66 (374)
..-....+++++.|+ ++++++++|||++.+++....+
T Consensus 10 ~~~~~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a 46 (124)
T cd05479 10 SFGKVPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACA 46 (124)
T ss_pred hhceeeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHH
Confidence 334556789999999 8999999999999999965543
No 32
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=95.52 E-value=0.1 Score=49.32 Aligned_cols=109 Identities=18% Similarity=0.250 Sum_probs=59.7
Q ss_pred eEEEEEEecCC----CceE-EEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCcCCCCCCCCCCCC
Q 048503 34 IYLMHLSIGTP----PVDI-FGSVDTGSDCTWTQCEPCPELDCFKQEPPLFDPKKSSTYNSISCSSSQCAVVTSNCSEGD 108 (374)
Q Consensus 34 ~y~~~v~iGtP----~Q~~-~~~iDTgS~~twv~~~~c~~~~C~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~c~~~~ 108 (374)
.-++.|+|=.| =|.+ ++++||||.-+=+..+.... ..........+.. ..+ .+|
T Consensus 23 ~p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl~~-----~l~~~Lp~~t~~g-~~l----aEC----------- 81 (370)
T PF11925_consen 23 IPTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASALPS-----SLAGSLPQQTGGG-APL----AEC----------- 81 (370)
T ss_pred ceeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhhch-----hhhccCCcccCCC-cch----hhh-----------
Confidence 34666666555 3566 99999999987664442210 0000111111111 110 122
Q ss_pred CeeeeEeCCCCCceeeEEEEEEEEEEEecCCCCceecCcEEEeeeecC-------------C-CCCCCCCCcceEeecCC
Q 048503 109 CSYSFLYGRGAYASFSSGNLATETLTFNSTSGLPVEMPNVIFGCGHKN-------------L-ASPTSDSKQTGIIGLGP 174 (374)
Q Consensus 109 ~~~~~~y~~g~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~-------------~-~~~~~~~~~~GilGLg~ 174 (374)
..|.+| ..| |-+.+-.|+|++. ...++.+.++.+. . ........++||||+|.
T Consensus 82 ----~~F~sg---ytW-GsVr~AdV~igge-----~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~ 148 (370)
T PF11925_consen 82 ----AQFASG---YTW-GSVRTADVTIGGE-----TASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGP 148 (370)
T ss_pred ----hhccCc---ccc-cceEEEEEEEcCe-----eccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecC
Confidence 357888 777 9999999999984 3334444444331 1 00011567899999986
Q ss_pred CC
Q 048503 175 GN 176 (374)
Q Consensus 175 ~~ 176 (374)
-.
T Consensus 149 ~~ 150 (370)
T PF11925_consen 149 FP 150 (370)
T ss_pred Cc
Confidence 53
No 33
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=94.46 E-value=0.057 Score=44.31 Aligned_cols=98 Identities=17% Similarity=0.327 Sum_probs=56.0
Q ss_pred CCcEEEecCcceeecChHHHHHHHHHHHhhhc-cCcccCCCCCCCccccceeeccCCCCCCeEEEEEeCceEEECCCceE
Q 048503 246 TGNIFVDTGVLRTLLPLEYHSNLKSVMSNMIK-AQPVKGVGAEPGFSDVLCYNISSQPKFPEVTIHFRGADVKLSPSNLF 324 (374)
Q Consensus 246 ~~~~iiDTGt~~i~lp~~~~~~i~~~l~~~~~-~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~i~~~~y~ 324 (374)
...++||||++-.++..+...++ .-... ........+ ... ...|.. ..+.+.+.++|..+... ++
T Consensus 32 ~~~vLiDSGAThsFIs~~~a~~~----~l~~~~l~~~~~V~~-~g~-~~~~~~-----~~~~~~~~i~g~~~~~d---l~ 97 (135)
T PF08284_consen 32 PASVLIDSGATHSFISSSFAKKL----GLPLEPLPRPIVVSA-PGG-SINCEG-----VCPDVPLSIQGHEFVVD---LL 97 (135)
T ss_pred EEEEEEecCCCcEEccHHHHHhc----CCEEEEccCeeEEec-ccc-cccccc-----eeeeEEEEECCeEEEee---eE
Confidence 34579999999999999855544 21110 000000000 000 122221 33455555555443221 11
Q ss_pred EEeCCCeEEEEEEc-CCCceeecccceeeeEEEEECCCCEEEEee
Q 048503 325 RNISDEIMCSAFRG-GNANIVYGRIMQINFLIGYDIEQAMVSFKP 368 (374)
Q Consensus 325 ~~~~~~~~C~~i~~-~~~~~iLG~~fl~~~y~vfD~e~~rigfa~ 368 (374)
+.+ .+-..|||.++|+.+..+-|+.+++|-|..
T Consensus 98 -----------vl~l~~~DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 98 -----------VLDLGGYDVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred -----------EecccceeeEeccchHHhCCCEEEccCCEEEEeC
Confidence 111 236899999999999999999999999964
No 34
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=93.65 E-value=0.078 Score=40.13 Aligned_cols=30 Identities=20% Similarity=0.080 Sum_probs=26.4
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeEeCCCC
Q 048503 35 YLMHLSIGTPPVDIFGSVDTGSDCTWTQCEPC 66 (374)
Q Consensus 35 y~~~v~iGtP~Q~~~~~iDTgS~~twv~~~~c 66 (374)
|++++.|+ ++++++++||||+.++++.+.+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~~ 30 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKTW 30 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHHH
Confidence 57899999 8999999999999999976644
No 35
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=92.76 E-value=0.23 Score=43.07 Aligned_cols=88 Identities=13% Similarity=0.046 Sum_probs=60.6
Q ss_pred eeeeeCceEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCcCCCCCCCCCC
Q 048503 27 EIISVDDIYLMHLSIGTPPVDIFGSVDTGSDCTWTQCEPCPELDCFKQEPPLFDPKKSSTYNSISCSSSQCAVVTSNCSE 106 (374)
Q Consensus 27 ~~~~~~~~y~~~v~iGtP~Q~~~~~iDTgS~~twv~~~~c~~~~C~~~~~~~y~~~~Sst~~~~~c~~~~c~~~~~~c~~ 106 (374)
.-...+|.|.++..|- +|++++++|||.+.+-+...+. ..-.++..+..
T Consensus 98 Lak~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA--------~RlGid~~~l~--------------------- 146 (215)
T COG3577 98 LAKSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDA--------RRLGIDLNSLD--------------------- 146 (215)
T ss_pred EEecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHH--------HHhCCCccccC---------------------
Confidence 3445678899999998 9999999999999999865542 22234333211
Q ss_pred CCCeeeeEeCCCCCceeeEEEEEEEEEEEecCCCCceecCcEEEeeeec
Q 048503 107 GDCSYSFLYGRGAYASFSSGNLATETLTFNSTSGLPVEMPNVIFGCGHK 155 (374)
Q Consensus 107 ~~~~~~~~y~~g~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~ 155 (374)
.++.+.=.+| ...-..+-.|.|.||+ +..+++.--++..
T Consensus 147 --y~~~v~TANG---~~~AA~V~Ld~v~IG~-----I~~~nV~A~V~~~ 185 (215)
T COG3577 147 --YTITVSTANG---RARAAPVTLDRVQIGG-----IRVKNVDAMVAED 185 (215)
T ss_pred --CceEEEccCC---ccccceEEeeeEEEcc-----EEEcCchhheecC
Confidence 4445555677 5554568899999999 7877666544443
No 36
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=92.54 E-value=0.86 Score=34.03 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=22.1
Q ss_pred EEEecCCCceEEEEEEcCCCceeEeCCCC
Q 048503 38 HLSIGTPPVDIFGSVDTGSDCTWTQCEPC 66 (374)
Q Consensus 38 ~v~iGtP~Q~~~~~iDTgS~~twv~~~~c 66 (374)
.+.|. ++++++++|||++.+.+.....
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~a 28 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDLG 28 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHHh
Confidence 45666 7899999999999999966543
No 37
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=91.72 E-value=0.31 Score=35.15 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=30.7
Q ss_pred eeCceEEEEEEecCCCceEEEEEEcCCCceeEeCCCCC
Q 048503 30 SVDDIYLMHLSIGTPPVDIFGSVDTGSDCTWTQCEPCP 67 (374)
Q Consensus 30 ~~~~~y~~~v~iGtP~Q~~~~~iDTgS~~twv~~~~c~ 67 (374)
...+.+++.+.|| ++.+.+++|||++...++.+.+.
T Consensus 4 ~~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a~ 39 (72)
T PF13975_consen 4 PDPGLMYVPVSIG--GVQVKALVDTGATHNFISESLAK 39 (72)
T ss_pred ccCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHHH
Confidence 4567899999999 79999999999999999766443
No 38
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=89.30 E-value=2 Score=33.64 Aligned_cols=24 Identities=13% Similarity=0.047 Sum_probs=21.2
Q ss_pred CceeecccceeeeEEEEECCCCEE
Q 048503 341 ANIVYGRIMQINFLIGYDIEQAMV 364 (374)
Q Consensus 341 ~~~iLG~~fl~~~y~vfD~e~~ri 364 (374)
...+||..||+.+-.+.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 578999999999999999987753
No 39
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=85.99 E-value=1.1 Score=34.17 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=23.5
Q ss_pred EEEEEecCCCceEEEEEEcCCCceeEeCCC
Q 048503 36 LMHLSIGTPPVDIFGSVDTGSDCTWTQCEP 65 (374)
Q Consensus 36 ~~~v~iGtP~Q~~~~~iDTgS~~twv~~~~ 65 (374)
+.+|.|. .+++++++||||+.+.++...
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecccc
Confidence 4677888 789999999999999996553
No 40
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=84.50 E-value=3.3 Score=34.77 Aligned_cols=25 Identities=12% Similarity=0.283 Sum_probs=20.6
Q ss_pred CCCCcEEEecCcceeecChHHHHHH
Q 048503 244 SSTGNIFVDTGVLRTLLPLEYHSNL 268 (374)
Q Consensus 244 ~~~~~~iiDTGt~~i~lp~~~~~~i 268 (374)
+....++||||++-.+...++.++|
T Consensus 43 ~t~i~vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 43 GTPIKVLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred CcEEEEEEeCCCccceeehhhHHhh
Confidence 3345679999999999999977777
No 41
>PF13650 Asp_protease_2: Aspartyl protease
Probab=83.39 E-value=2 Score=31.72 Aligned_cols=29 Identities=17% Similarity=0.394 Sum_probs=23.9
Q ss_pred EEECCEEEEeeeCCCCcEEEecCcceeecChHHHHHH
Q 048503 232 ISVGNQRLEFVSSSTGNIFVDTGVLRTLLPLEYHSNL 268 (374)
Q Consensus 232 i~v~~~~~~~~~~~~~~~iiDTGt~~i~lp~~~~~~i 268 (374)
+.|||+++ .+++|||++.+.++++.++++
T Consensus 3 v~vng~~~--------~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV--------RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE--------EEEEcCCCCcEEECHHHHHHc
Confidence 56777755 569999999999999977776
No 42
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=80.40 E-value=3.3 Score=31.04 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=25.5
Q ss_pred EEEECCEEEEeeeCCCCcEEEecCcceeecChHHHHHH
Q 048503 231 AISVGNQRLEFVSSSTGNIFVDTGVLRTLLPLEYHSNL 268 (374)
Q Consensus 231 ~i~v~~~~~~~~~~~~~~~iiDTGt~~i~lp~~~~~~i 268 (374)
.+.|||+.+. +.+|||++...++.+.+.++
T Consensus 4 ~~~Ing~~i~--------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK--------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE--------EEEcCCcceEEeCHHHHHHh
Confidence 4678888775 49999999999999988777
No 43
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=79.91 E-value=3.1 Score=33.32 Aligned_cols=30 Identities=27% Similarity=0.295 Sum_probs=24.4
Q ss_pred EEEECCEEEEeeeCCCCcEEEecCcceeecChHHHHHH
Q 048503 231 AISVGNQRLEFVSSSTGNIFVDTGVLRTLLPLEYHSNL 268 (374)
Q Consensus 231 ~i~v~~~~~~~~~~~~~~~iiDTGt~~i~lp~~~~~~i 268 (374)
.+.|||+++ .+++|||++.+.++.+..+++
T Consensus 15 ~~~InG~~~--------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 15 TGRVNGRNV--------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred EEEECCEEE--------EEEEECCCCcEEcCHHHHHHc
Confidence 366788865 459999999999999977666
No 44
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=76.09 E-value=5.9 Score=29.41 Aligned_cols=30 Identities=23% Similarity=0.458 Sum_probs=24.0
Q ss_pred EEEECCEEEEeeeCCCCcEEEecCcceeecChHHHHHH
Q 048503 231 AISVGNQRLEFVSSSTGNIFVDTGVLRTLLPLEYHSNL 268 (374)
Q Consensus 231 ~i~v~~~~~~~~~~~~~~~iiDTGt~~i~lp~~~~~~i 268 (374)
.+.+|++++ .+++|||++.+.++.+..+++
T Consensus 6 ~v~i~~~~~--------~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPV--------RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEE--------EEEEECCCCcEEcCHHHHHHc
Confidence 466777765 459999999999999877665
No 45
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=75.97 E-value=4.5 Score=30.07 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=24.4
Q ss_pred EEECCEEEEeeeCCCCcEEEecCcceeecChHHHHHH
Q 048503 232 ISVGNQRLEFVSSSTGNIFVDTGVLRTLLPLEYHSNL 268 (374)
Q Consensus 232 i~v~~~~~~~~~~~~~~~iiDTGt~~i~lp~~~~~~i 268 (374)
+.|||+.+. +++|||++.+.++.+..+.+
T Consensus 3 v~InG~~~~--------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV--------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE--------EEEECCCCeEEECHHHhhhc
Confidence 677888765 49999999999999987765
No 46
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=74.32 E-value=6.8 Score=28.03 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=24.2
Q ss_pred EEECCEEEEeeeCCCCcEEEecCcceeecChHHHHHH
Q 048503 232 ISVGNQRLEFVSSSTGNIFVDTGVLRTLLPLEYHSNL 268 (374)
Q Consensus 232 i~v~~~~~~~~~~~~~~~iiDTGt~~i~lp~~~~~~i 268 (374)
+.|++..+ .+++|||++..+++.+..+++
T Consensus 13 ~~I~g~~~--------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQV--------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEE--------EEEEeCCCcceecCHHHHHHh
Confidence 67777665 479999999999999977776
No 47
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=73.61 E-value=4.5 Score=30.36 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=21.3
Q ss_pred EEEecCCCceEEEEEEcCCCceeEeCC
Q 048503 38 HLSIGTPPVDIFGSVDTGSDCTWTQCE 64 (374)
Q Consensus 38 ~v~iGtP~Q~~~~~iDTgS~~twv~~~ 64 (374)
.+.|+ .|.+.+++|||+.+|.+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 46677 89999999999999999654
No 48
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=70.85 E-value=13 Score=32.52 Aligned_cols=52 Identities=12% Similarity=0.114 Sum_probs=34.9
Q ss_pred CCCeEEEEEeCceEEECCCceEEEeCCCeEEEEEEcCCCceeecccceeeeEEEEECCCCEEEEee
Q 048503 303 KFPEVTIHFRGADVKLSPSNLFRNISDEIMCSAFRGGNANIVYGRIMQINFLIGYDIEQAMVSFKP 368 (374)
Q Consensus 303 ~~P~i~~~f~g~~~~i~~~~y~~~~~~~~~C~~i~~~~~~~iLG~~fl~~~y~vfD~e~~rigfa~ 368 (374)
..+.+.+.++|..|.+|-- +. ..++-..|||.+|+|.|+=....+ .+|-|..
T Consensus 66 ~~~~~~i~I~~~~F~IP~i---Yq----------~~~g~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 66 KAKNGKIQIADKIFRIPTI---YQ----------QESGIDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred EecCceEEEccEEEeccEE---EE----------ecCCCCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 4567777777777776632 22 224688999999999877666664 4677653
No 49
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=61.86 E-value=12 Score=28.43 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.4
Q ss_pred CcEEEecCcceeecChHHHHHH
Q 048503 247 GNIFVDTGVLRTLLPLEYHSNL 268 (374)
Q Consensus 247 ~~~iiDTGt~~i~lp~~~~~~i 268 (374)
..+.+|||++...+|...++.+
T Consensus 11 v~~~vDtGA~vnllp~~~~~~l 32 (93)
T cd05481 11 VKFQLDTGATCNVLPLRWLKSL 32 (93)
T ss_pred EEEEEecCCEEEeccHHHHhhh
Confidence 3569999999999999988877
No 50
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=61.58 E-value=11 Score=31.71 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=24.1
Q ss_pred EEEEEecCCCceEEEEEEcCCCceeEeCC
Q 048503 36 LMHLSIGTPPVDIFGSVDTGSDCTWTQCE 64 (374)
Q Consensus 36 ~~~v~iGtP~Q~~~~~iDTgS~~twv~~~ 64 (374)
...+.+++-..+++++|||||+...+...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 45666777789999999999999998665
No 51
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=57.43 E-value=18 Score=29.14 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=23.1
Q ss_pred cceeeeeCceEEEEEEecCCCceEEEEEEcCCCceeEeCC
Q 048503 25 QAEIISVDDIYLMHLSIGTPPVDIFGSVDTGSDCTWTQCE 64 (374)
Q Consensus 25 ~~~~~~~~~~y~~~v~iGtP~Q~~~~~iDTgS~~twv~~~ 64 (374)
.|.........|++++|. .++++.++|||.-.+.++.+
T Consensus 15 ~PE~f~~v~mLyI~~~in--g~~vkA~VDtGAQ~tims~~ 52 (124)
T PF09668_consen 15 SPESFGQVSMLYINCKIN--GVPVKAFVDTGAQSTIMSKS 52 (124)
T ss_dssp -----------EEEEEET--TEEEEEEEETT-SS-EEEHH
T ss_pred CcHhhcCcceEEEEEEEC--CEEEEEEEeCCCCccccCHH
Confidence 344444556789999999 89999999999999999655
No 52
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=56.27 E-value=40 Score=25.41 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=18.4
Q ss_pred CCCCcEEEecCcceeecChHHHH
Q 048503 244 SSTGNIFVDTGVLRTLLPLEYHS 266 (374)
Q Consensus 244 ~~~~~~iiDTGt~~i~lp~~~~~ 266 (374)
.++...++|||+....+|....+
T Consensus 7 ~s~~~fLVDTGA~vSviP~~~~~ 29 (89)
T cd06094 7 TSGLRFLVDTGAAVSVLPASSTK 29 (89)
T ss_pred CCCcEEEEeCCCceEeecccccc
Confidence 44667899999999999988443
No 53
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=55.19 E-value=14 Score=27.90 Aligned_cols=26 Identities=12% Similarity=0.379 Sum_probs=21.3
Q ss_pred EEEECCEEEEeeeCCCCcEEEecCcceeecChHH
Q 048503 231 AISVGNQRLEFVSSSTGNIFVDTGVLRTLLPLEY 264 (374)
Q Consensus 231 ~i~v~~~~~~~~~~~~~~~iiDTGt~~i~lp~~~ 264 (374)
.|.++++.+ .+++|||+....++.+.
T Consensus 9 ~v~i~g~~i--------~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 9 TVKINGKKI--------KALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEETTEEE--------EEEEETTBSSEEESSGG
T ss_pred EEeECCEEE--------EEEEecCCCcceecccc
Confidence 467788876 46999999999999873
No 54
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=50.78 E-value=21 Score=27.80 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=21.8
Q ss_pred EEEEEecCCCc----eEEEEEEcCCCcee-EeCC
Q 048503 36 LMHLSIGTPPV----DIFGSVDTGSDCTW-TQCE 64 (374)
Q Consensus 36 ~~~v~iGtP~Q----~~~~~iDTgS~~tw-v~~~ 64 (374)
+++|.|..|.| ++++++|||.+... ++..
T Consensus 1 ~~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~ 34 (107)
T TIGR03698 1 TLDVELSNPKNPEFMEVRALVDTGFSGFLLVPPD 34 (107)
T ss_pred CEEEEEeCCCCCCceEEEEEEECCCCeEEecCHH
Confidence 36788988833 67999999999765 5433
No 55
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=48.13 E-value=24 Score=28.43 Aligned_cols=30 Identities=20% Similarity=0.322 Sum_probs=23.4
Q ss_pred EEEECCEEEEeeeCCCCcEEEecCcceeecChHHHHHH
Q 048503 231 AISVGNQRLEFVSSSTGNIFVDTGVLRTLLPLEYHSNL 268 (374)
Q Consensus 231 ~i~v~~~~~~~~~~~~~~~iiDTGt~~i~lp~~~~~~i 268 (374)
.+++||+.+ .+++|||+..+.++.+..+++
T Consensus 28 ~~~ing~~v--------kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPV--------KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEE--------EEEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEE--------EEEEeCCCCccccCHHHHHHc
Confidence 377888875 579999999999999987775
No 56
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=44.17 E-value=18 Score=28.97 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=18.2
Q ss_pred EEEecCcc-eeecChHHHHHH
Q 048503 249 IFVDTGVL-RTLLPLEYHSNL 268 (374)
Q Consensus 249 ~iiDTGt~-~i~lp~~~~~~i 268 (374)
.++|||.+ ++.+|.++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 48999999 999999988888
No 57
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=43.30 E-value=43 Score=29.39 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=25.1
Q ss_pred EEEECCEEEEeeeCCCCcEEEecCcceeecChHHHHHH
Q 048503 231 AISVGNQRLEFVSSSTGNIFVDTGVLRTLLPLEYHSNL 268 (374)
Q Consensus 231 ~i~v~~~~~~~~~~~~~~~iiDTGt~~i~lp~~~~~~i 268 (374)
...|||+.+.+ ++|||.+.+.++.+..+.+
T Consensus 109 ~~~VNGk~v~f--------LVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 109 NGRVNGKKVDF--------LVDTGATSVALNEEDARRL 138 (215)
T ss_pred EEEECCEEEEE--------EEecCcceeecCHHHHHHh
Confidence 46788888754 9999999999999976666
No 58
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=40.81 E-value=23 Score=26.80 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=18.7
Q ss_pred EEecCCC-ceEEEEEEcCCCceeEeCC
Q 048503 39 LSIGTPP-VDIFGSVDTGSDCTWTQCE 64 (374)
Q Consensus 39 v~iGtP~-Q~~~~~iDTgS~~twv~~~ 64 (374)
+.|. . +++++++|||++...++-.
T Consensus 3 ~~i~--g~~~v~~~vDtGA~vnllp~~ 27 (93)
T cd05481 3 MKIN--GKQSVKFQLDTGATCNVLPLR 27 (93)
T ss_pred eEeC--CceeEEEEEecCCEEEeccHH
Confidence 4444 4 8999999999998877544
No 59
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=30.32 E-value=62 Score=26.33 Aligned_cols=31 Identities=13% Similarity=0.218 Sum_probs=25.1
Q ss_pred CceEEEEEEecCCCceEEEEEEcCCCceeEeCC
Q 048503 32 DDIYLMHLSIGTPPVDIFGSVDTGSDCTWTQCE 64 (374)
Q Consensus 32 ~~~y~~~v~iGtP~Q~~~~~iDTgS~~twv~~~ 64 (374)
...-.+.+.|. .++..++||+|++...+...
T Consensus 19 ~~vi~g~~~I~--~~~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 19 PDVITGTFLIN--SIPASVLIDSGATHSFISSS 49 (135)
T ss_pred CCeEEEEEEec--cEEEEEEEecCCCcEEccHH
Confidence 34567788888 68999999999999988544
No 60
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=25.46 E-value=99 Score=28.22 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=22.9
Q ss_pred ceEEEE---EEecC---CCceEEEEEEcCCCceeEeCC
Q 048503 33 DIYLMH---LSIGT---PPVDIFGSVDTGSDCTWTQCE 64 (374)
Q Consensus 33 ~~y~~~---v~iGt---P~Q~~~~~iDTgS~~twv~~~ 64 (374)
..|.++ |.||. +.....++||||++.+.++..
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 567665 57873 223457999999999999654
Done!