BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048504
(277 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 187 TLPQVFIRGKHVGNADVLKSMYETGELARVLDG 219
T PQ++++G+ VG D++K + E GEL +L G
Sbjct: 72 TYPQLYVKGELVGGLDIVKELKENGELLPILRG 104
>pdb|1SJ6|A Chain A, Nmr Structure And Regulated Expression In Apl Cell Of
Human Sh3bgrl3
Length = 101
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%)
Query: 133 VYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVF 192
VY TS+ G R V I G R+ D+S D+A + E++ + G T PQ+
Sbjct: 6 VYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRALAGNPKATPPQIV 65
Query: 193 IRGKHVGNADVLKSMYETGELARVL 217
++ G+ ++ E L L
Sbjct: 66 NGDQYCGDYELFVEAVEQNTLQEFL 90
>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The
Mouse Pkc-Interacting Cousin Of Thioredoxin Protein
Length = 109
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 187 TLPQVFIRGKHVGNADVLKSMYETGELARVLDG 219
T PQ+++RG VG D++K + + GEL +L G
Sbjct: 70 TYPQLYVRGDLVGGLDIVKELKDNGELLPILKG 102
>pdb|1J0F|A Chain A, Solution Structure Of The Sh3 Domain Binding Glutamic
Acid- Rich Protein Like 3
Length = 100
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 133 VYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVF 192
VY TS+ G R V I G R+ D+S D+A + E++ + G T PQ+
Sbjct: 13 VYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQI- 71
Query: 193 IRGKH 197
+ G H
Sbjct: 72 VNGNH 76
>pdb|1T1V|A Chain A, Crystal Structure Of The Glutaredoxin-Like Protein
Sh3bgrl3 At 1.6 A Resolution
pdb|1T1V|B Chain B, Crystal Structure Of The Glutaredoxin-Like Protein
Sh3bgrl3 At 1.6 A Resolution
Length = 93
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 133 VYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVF 192
VY TS+ G R V I G R+ D+S D+A + E++ + G T PQ+
Sbjct: 6 VYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQI- 64
Query: 193 IRGKH 197
+ G H
Sbjct: 65 VNGNH 69
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 166 DVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSMYETGELARVL 217
++S S + L+ + G K T+P V+I GKH+G L+++ + G+LA +L
Sbjct: 58 EMSNGSEIQDALEEISGQK--TVPNVYINGKHIGGNSDLETLKKNGKLAEIL 107
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 166 DVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSMYETGELARVL 217
++S S + L+ + G K T+P V+I GKH+G L+++ + G+LA +L
Sbjct: 55 EMSNGSEIQDALEEISGQK--TVPNVYINGKHIGGNSDLETLKKNGKLAEIL 104
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 166 DVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSMYETGELARVL 217
++S S + L+ + G K T+P V+I GKH+G L+++ + G+LA +L
Sbjct: 75 EMSNGSEIQDALEEISGQK--TVPNVYINGKHIGGNSDLETLKKNGKLAEIL 124
>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast
Monothiol Glutaredoxin Grx5
Length = 121
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 187 TLPQVFIRGKHVGNADVLKSMYETGELARVLD 218
T+PQ+++ + +G DV+ SM +GELA +L+
Sbjct: 74 TIPQLYVNKEFIGGCDVITSMARSGELADLLE 105
>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From
E. Coli
Length = 115
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 187 TLPQVFIRGKHVGNADVLKSMYETGELARVL 217
T PQ+++ G+ VG D++ MY+ GEL +++
Sbjct: 70 TFPQLWVDGELVGGCDIVIEMYQRGELQQLI 100
>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|B Chain B, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|C Chain C, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|D Chain D, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
Length = 118
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 187 TLPQVFIRGKHVGNADVLKSMYETGELARVL 217
T+PQV++ G+ VG D+L M++ G+L L
Sbjct: 76 TIPQVYLNGEFVGGCDILLQMHQNGDLVEEL 106
>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
pdb|2WCI|B Chain B, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
Length = 135
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 187 TLPQVFIRGKHVGNADVLKSMYETGELARVL 217
T PQ+++ G+ VG D++ MY+ GEL +++
Sbjct: 90 TFPQLWVDGELVGGCDIVIEMYQRGELQQLI 120
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 187 TLPQVFIRGKHVGNADVLKSMYETGELARVLD 218
T+PQ+F+RGK +G++ + Y ELA +++
Sbjct: 71 TVPQMFVRGKFIGDSQTVLKYYSNDELAGIVN 102
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 187 TLPQVFIRGKHVGNADVLKSMYETGELARVLD 218
T+PQ+F+RGK +G++ + Y ELA +++
Sbjct: 71 TVPQMFVRGKFIGDSQTVLKYYSNDELAGIVN 102
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 187 TLPQVFIRGKHVGNADVLKSMYETGELARVLD 218
T+PQ+F+RGK +G++ + Y ELA +++
Sbjct: 71 TVPQMFVRGKFIGDSQTVLKYYSNDELAGIVN 102
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 32.3 bits (72), Expect = 0.26, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 166 DVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSMYETGELARVL 217
D+ ++ ++E+ G+N T PQ+FI HVG D L ++ G+L +L
Sbjct: 35 DIDASTSLRQEMVQRANGRN-TFPQIFIGDYHVGGCDDLYALENKGKLDSLL 85
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 187 TLPQVFIRGKHVGNADVLKSMY 208
T+PQVFI GKH+G +D L+ +
Sbjct: 219 TVPQVFIGGKHIGGSDDLEKYF 240
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 32.0 bits (71), Expect = 0.36, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 163 DERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSMYETGELARVL 217
+E D S + E+Q G+N T PQ+FI HVG D L ++ + G+L +L
Sbjct: 34 NEIDASATPELRAEMQ-ERSGRN-TFPQIFIGSVHVGGCDDLYALEDEGKLDSLL 86
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 151 VRMIFRGFRVWVDERDVSMD--SAYKKELQCVF---GGKNVTLPQVFIRGKHVGNADVLK 205
V+ +F+ R+ VD V +D A ++Q V G++ T+P VFI GKH+G
Sbjct: 34 VKSLFK--RLNVDPLVVELDELGAQGPQIQKVLERLTGQH-TVPNVFIGGKHIGGCTDTV 90
Query: 206 SMYETGELARVL 217
+Y GEL +L
Sbjct: 91 KLYRKGELEPLL 102
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 16/105 (15%)
Query: 119 ESSIRLPGTEDRIVVYLTSLRGIRRTF-EDCYAVRMIFRGFRVWVDERDVSMDSAYKK-- 175
E SIR TE+ +V+Y +T+ C V+ +F+ R+ V V +D +
Sbjct: 9 EESIRKTVTENTVVIY-------SKTWCSYCTEVKTLFK--RLGVQPLVVELDQLGPQGP 59
Query: 176 ELQCVF---GGKNVTLPQVFIRGKHVGNADVLKSMYETGELARVL 217
+LQ V G++ T+P VF+ GKH+G + G+L +L
Sbjct: 60 QLQKVLERLTGQH-TVPNVFVCGKHIGGCTDTVKLNRKGDLELML 103
>pdb|2LKU|A Chain A, Solution Structure Of Reduced Poplar Apo Grxs14
Length = 109
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 187 TLPQVFIRGKHVGNADVLKSMYETGEL 213
T PQ++I G+ G D+ Y++GEL
Sbjct: 73 TFPQLYIDGEFFGGCDITVEAYKSGEL 99
>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
pdb|2QZP|B Chain B, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
Length = 562
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 88 KINLNEPESPQQHHLIKLTKPVKSLSLCYNNESSIRLPGTEDRIVVYLTSLRGIR 142
K+N + P Q+ ++ KP++ LS E+ + TEDR+ +Y G+R
Sbjct: 74 KVNTSRPGEEQR---LEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR 125
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLP 189
++VV++ R ++ + I +G +VD + + + LQ + G + T+P
Sbjct: 13 KVVVFIKPTCPYSRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQQLTGAR--TVP 70
Query: 190 QVFIRGKHVGNADVLKSMYETGEL 213
+VFI +G + L S+ ++GEL
Sbjct: 71 RVFIGKDSIGGSSDLVSLQQSGEL 94
>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 88 KINLNEPESPQQHHLIKLTKPVKSLSLCYNNESSIRLPGTEDRIVVYLTSLRGIR 142
K+N + P Q+ ++ KP++ LS E+ + TEDR+ +Y G+R
Sbjct: 94 KVNTSRPGEEQR---LEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR 145
>pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 88 KINLNEPESPQQHHLIKLTKPVKSLSLCYNNESSIRLPGTEDRIVVYLTSLRGIR 142
K+N + P Q+ ++ KP++ LS E+ + TEDR+ +Y G+R
Sbjct: 94 KVNTSRPGEEQR---LEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR 145
>pdb|3IPZ|A Chain A, Crystal Structure Of Arabidopsis Monothiol Glutaredoxin
Atgr
Length = 109
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 187 TLPQVFIRGKHVGNADVLKSMYETGEL 213
T PQ++I G+ G D+ ++TGEL
Sbjct: 73 TFPQLYIGGEFFGGCDITLEAFKTGEL 99
>pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
pdb|2QR5|B Chain B, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
Length = 582
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 88 KINLNEPESPQQHHLIKLTKPVKSLSLCYNNESSIRLPGTEDRIVVYLTSLRGIR 142
K+N + P Q+ ++ KP++ LS E+ + TEDR+ +Y G+R
Sbjct: 94 KVNTSRPGEEQR---LEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR 145
>pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU8|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
Length = 582
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 88 KINLNEPESPQQHHLIKLTKPVKSLSLCYNNESSIRLPGTEDRIVVYLTSLRGIR 142
K+N + P Q+ ++ KP++ LS E+ + TEDR+ +Y G+R
Sbjct: 94 KVNTSRPGEEQR---LEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR 145
>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 88 KINLNEPESPQQHHLIKLTKPVKSLSLCYNNESSIRLPGTEDRIVVYLTSLRGIR 142
K+N + P Q+ ++ KP++ LS E+ + TEDR+ +Y G+R
Sbjct: 94 KVNTSRPGEEQR---LEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR 145
>pdb|3QMX|A Chain A, X-Ray Crystal Structure Of Synechocystis Sp. Pcc 6803
Glutaredoxin A
Length = 99
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 187 TLPQVFIRGKHVGNADVLKSMYETGELARVL 217
+LPQ+FI +H+G D + ++ G+L +L
Sbjct: 67 SLPQIFIDDQHIGGCDDIYALDGAGKLDPLL 97
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 157 GFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSMYETGEL 213
G +VD S + + LQ + G + T+P+VFI + +G L+SM++ GEL
Sbjct: 40 GLLEFVDITATSDTNEIQDYLQQLTGAR--TVPRVFIGKECIGGCTDLESMHKRGEL 94
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 28.5 bits (62), Expect = 3.9, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 148 CYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSM 207
C+ + + V E + ++A ++E+ + T+PQ+FI +H+G D L ++
Sbjct: 14 CHRAKALLSSKGVSFQELPIDGNAAKREEM--IKRSGRTTVPQIFIDAQHIGGYDDLYAL 71
Query: 208 YETGELARVL 217
G L +L
Sbjct: 72 DARGGLDPLL 81
>pdb|1R64|A Chain A, The 2.2 A Crystal Structure Of Kex2 Protease In Complex
With Ac-Arg- Glu-Lys-Boroarg Peptidyl Boronic Acid
Inhibitor
pdb|1R64|B Chain B, The 2.2 A Crystal Structure Of Kex2 Protease In Complex
With Ac-Arg- Glu-Lys-Boroarg Peptidyl Boronic Acid
Inhibitor
Length = 481
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 79 LFEPKKSSKKINLNEPESPQQHHLIKLTKP---VKSLSLCYNN 118
L K++ K+++N+P +Q HL+ + P + L L YNN
Sbjct: 1 LLPVKEAEDKLSINDPLFERQWHLVNPSFPGSDINVLDLWYNN 43
>pdb|2ID4|A Chain A, The 1.9 A Structure Of Kex2 In Complex With An
Ac-R-E-R-K-Chloromethyl Ketone Inhibitor.
pdb|2ID4|B Chain B, The 1.9 A Structure Of Kex2 In Complex With An
Ac-R-E-R-K-Chloromethyl Ketone Inhibitor
Length = 503
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 79 LFEPKKSSKKINLNEPESPQQHHLIKLTKP---VKSLSLCYNN 118
L K++ K+++N+P +Q HL+ + P + L L YNN
Sbjct: 8 LLPVKEAEDKLSINDPLFERQWHLVNPSFPGSDINVLDLWYNN 50
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 28.1 bits (61), Expect = 4.8, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 162 VDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSMYETGELARVL 217
V +++ +D K + + T+PQ+FI +H+G D L ++ G L +L
Sbjct: 26 VSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHIGGYDDLYALDARGGLDPLL 81
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 187 TLPQVFIRGKHVGNADVLKSMYETGELARVL 217
T+P VFI GK +G D + ++ EL +L
Sbjct: 74 TVPNVFIGGKQIGGCDTVVEKHQRNELLPLL 104
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 187 TLPQVFIRGKHVGNADVLKSMYETGELARVL 217
T+P +F+ HVG D Y++G L ++L
Sbjct: 70 TVPNIFVNKVHVGGCDQTFQAYQSGLLQKLL 100
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 187 TLPQVFIRGKHVGNADVLKSMYETGELARVL 217
T+P VFI GK +G D + ++ EL +L
Sbjct: 73 TVPNVFIGGKQIGGCDTVVEKHQRNELLPLL 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,649,710
Number of Sequences: 62578
Number of extensions: 300521
Number of successful extensions: 599
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 570
Number of HSP's gapped (non-prelim): 43
length of query: 277
length of database: 14,973,337
effective HSP length: 98
effective length of query: 179
effective length of database: 8,840,693
effective search space: 1582484047
effective search space used: 1582484047
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)