Query 048504
Match_columns 277
No_of_seqs 213 out of 1279
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 10:04:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048504.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048504hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2824 Glutaredoxin-related p 100.0 1.2E-53 2.6E-58 392.9 16.4 156 120-276 122-281 (281)
2 cd03031 GRX_GRX_like Glutaredo 100.0 2.5E-51 5.4E-56 349.6 17.2 142 130-271 1-147 (147)
3 cd03030 GRX_SH3BGR Glutaredoxi 99.9 2.8E-24 6.2E-29 170.3 9.6 88 131-218 2-91 (92)
4 TIGR00365 monothiol glutaredox 99.9 1.4E-22 3E-27 160.7 10.5 95 120-217 3-97 (97)
5 PRK10824 glutaredoxin-4; Provi 99.9 3.5E-22 7.6E-27 164.5 8.8 100 120-222 6-105 (115)
6 TIGR02189 GlrX-like_plant Glut 99.9 9.9E-22 2.2E-26 156.4 10.1 90 124-221 3-95 (99)
7 cd03028 GRX_PICOT_like Glutare 99.8 5.5E-21 1.2E-25 148.9 10.5 89 123-214 2-90 (90)
8 PHA03050 glutaredoxin; Provisi 99.8 4.5E-21 9.7E-26 155.5 9.8 95 120-222 4-104 (108)
9 TIGR02181 GRX_bact Glutaredoxi 99.8 1.2E-19 2.5E-24 136.1 9.7 79 131-217 1-79 (79)
10 PRK10638 glutaredoxin 3; Provi 99.8 2.9E-19 6.2E-24 136.3 11.1 82 129-218 2-83 (83)
11 PTZ00062 glutaredoxin; Provisi 99.8 1.5E-19 3.2E-24 161.7 8.1 98 118-218 102-199 (204)
12 KOG1752 Glutaredoxin and relat 99.8 7.5E-19 1.6E-23 142.6 8.9 93 121-221 6-101 (104)
13 cd03418 GRX_GRXb_1_3_like Glut 99.8 5.1E-18 1.1E-22 125.1 10.5 75 130-211 1-75 (75)
14 cd03027 GRX_DEP Glutaredoxin ( 99.8 5.1E-18 1.1E-22 126.1 9.8 73 129-209 1-73 (73)
15 TIGR02180 GRX_euk Glutaredoxin 99.7 6.8E-17 1.5E-21 120.5 9.4 79 131-217 1-84 (84)
16 COG0278 Glutaredoxin-related p 99.7 4.3E-17 9.3E-22 131.7 8.5 99 119-220 5-104 (105)
17 cd03419 GRX_GRXh_1_2_like Glut 99.7 1.9E-16 4.1E-21 118.1 8.9 79 130-216 1-82 (82)
18 COG0695 GrxC Glutaredoxin and 99.7 1.8E-16 3.9E-21 122.0 8.4 76 130-213 2-79 (80)
19 cd03029 GRX_hybridPRX5 Glutare 99.7 5.1E-16 1.1E-20 114.9 9.6 70 130-208 2-71 (72)
20 cd02066 GRX_family Glutaredoxi 99.7 7.9E-16 1.7E-20 109.5 10.2 72 130-209 1-72 (72)
21 PF04908 SH3BGR: SH3-binding, 99.6 6.4E-16 1.4E-20 124.5 8.9 89 130-218 2-97 (99)
22 TIGR02190 GlrX-dom Glutaredoxi 99.6 1.6E-15 3.4E-20 115.0 10.4 73 126-207 5-77 (79)
23 PRK11200 grxA glutaredoxin 1; 99.6 1.7E-15 3.8E-20 115.7 10.4 75 130-210 2-81 (85)
24 TIGR02183 GRXA Glutaredoxin, G 99.6 1.6E-15 3.6E-20 117.1 10.2 75 131-211 2-81 (86)
25 KOG0911 Glutaredoxin-related p 99.6 1.1E-14 2.3E-19 132.1 9.8 97 120-219 130-226 (227)
26 PF00462 Glutaredoxin: Glutare 99.5 3.2E-14 7E-19 101.9 8.7 60 131-198 1-60 (60)
27 PRK12759 bifunctional gluaredo 99.5 9.6E-14 2.1E-18 135.1 11.0 84 129-222 2-93 (410)
28 TIGR02194 GlrX_NrdH Glutaredox 99.3 3.2E-12 6.9E-17 95.0 7.7 64 131-203 1-65 (72)
29 PRK10329 glutaredoxin-like pro 99.3 7E-12 1.5E-16 96.6 9.7 65 130-203 2-66 (81)
30 TIGR02196 GlrX_YruB Glutaredox 99.1 6.1E-10 1.3E-14 79.6 10.0 66 130-203 1-66 (74)
31 cd02976 NrdH NrdH-redoxin (Nrd 99.0 1.8E-09 4E-14 77.1 8.9 66 130-203 1-66 (73)
32 TIGR02200 GlrX_actino Glutared 98.8 4.7E-08 1E-12 71.3 9.4 65 130-202 1-67 (77)
33 KOG4023 Uncharacterized conser 98.6 7.6E-08 1.6E-12 78.2 6.7 94 130-223 3-102 (108)
34 cd02973 TRX_GRX_like Thioredox 98.6 1.4E-07 2.9E-12 68.2 6.8 59 130-200 2-65 (67)
35 cd03041 GST_N_2GST_N GST_N fam 98.5 1.3E-06 2.9E-11 65.4 9.4 71 131-209 2-74 (77)
36 cd03040 GST_N_mPGES2 GST_N fam 98.3 5.7E-06 1.2E-10 61.2 9.4 68 130-208 1-72 (77)
37 cd00570 GST_N_family Glutathio 98.3 2.5E-06 5.5E-11 59.0 6.7 68 132-207 2-69 (71)
38 cd03037 GST_N_GRX2 GST_N famil 98.3 5.9E-06 1.3E-10 60.3 8.1 67 132-208 2-69 (71)
39 cd03055 GST_N_Omega GST_N fami 98.0 2.8E-05 6.1E-10 59.9 8.4 73 126-207 14-87 (89)
40 cd03059 GST_N_SspA GST_N famil 98.0 4.2E-05 9E-10 55.5 7.8 69 131-208 1-69 (73)
41 cd03036 ArsC_like Arsenate Red 97.9 1.4E-05 3.1E-10 64.6 4.8 47 131-183 1-47 (111)
42 cd02977 ArsC_family Arsenate R 97.8 2.2E-05 4.8E-10 62.3 4.5 47 131-183 1-47 (105)
43 cd03051 GST_N_GTT2_like GST_N 97.8 6.3E-05 1.4E-09 54.1 6.5 67 132-206 2-71 (74)
44 cd03060 GST_N_Omega_like GST_N 97.8 9.8E-05 2.1E-09 54.1 7.2 66 132-206 2-68 (71)
45 PF13417 GST_N_3: Glutathione 97.8 0.0001 2.2E-09 54.7 7.3 68 133-209 1-68 (75)
46 TIGR00411 redox_disulf_1 small 97.8 0.00018 4E-09 52.9 8.6 55 130-196 2-62 (82)
47 PRK01655 spxA transcriptional 97.7 7.6E-05 1.6E-09 62.4 6.1 45 131-181 2-46 (131)
48 cd03045 GST_N_Delta_Epsilon GS 97.7 0.00017 3.7E-09 52.5 7.2 68 131-206 1-70 (74)
49 PF05768 DUF836: Glutaredoxin- 97.7 0.00052 1.1E-08 52.4 9.6 53 130-195 1-57 (81)
50 cd03056 GST_N_4 GST_N family, 97.6 0.00028 6E-09 50.9 7.5 67 132-206 2-70 (73)
51 cd03054 GST_N_Metaxin GST_N fa 97.5 0.00072 1.6E-08 49.4 8.2 61 139-209 10-70 (72)
52 TIGR01617 arsC_related transcr 97.5 0.00023 4.9E-09 57.9 6.0 46 131-182 1-46 (117)
53 cd03032 ArsC_Spx Arsenate Redu 97.5 0.00031 6.7E-09 57.0 6.2 46 131-182 2-47 (115)
54 PRK13344 spxA transcriptional 97.4 0.00029 6.4E-09 59.1 5.5 45 131-181 2-46 (132)
55 PRK12559 transcriptional regul 97.4 0.00033 7.1E-09 58.8 5.5 45 131-181 2-46 (131)
56 cd03035 ArsC_Yffb Arsenate Red 97.3 0.0003 6.4E-09 56.8 4.6 46 131-182 1-46 (105)
57 PHA02125 thioredoxin-like prot 97.3 0.0012 2.7E-08 49.3 6.9 55 131-198 2-56 (75)
58 cd03053 GST_N_Phi GST_N family 97.2 0.0022 4.8E-08 46.9 7.9 70 131-208 2-73 (76)
59 cd03026 AhpF_NTD_C TRX-GRX-lik 97.2 0.00093 2E-08 52.3 6.1 63 125-199 10-77 (89)
60 cd03061 GST_N_CLIC GST_N famil 97.2 0.0039 8.6E-08 49.6 9.2 76 131-209 6-83 (91)
61 cd03033 ArsC_15kD Arsenate Red 97.2 0.00073 1.6E-08 55.4 5.1 47 130-182 1-47 (113)
62 cd03058 GST_N_Tau GST_N family 97.1 0.0031 6.7E-08 46.2 7.7 69 131-207 1-69 (74)
63 cd03042 GST_N_Zeta GST_N famil 97.1 0.0023 5E-08 46.1 6.7 68 132-207 2-71 (73)
64 cd03052 GST_N_GDAP1 GST_N fami 97.1 0.0024 5.2E-08 47.6 6.9 69 131-207 1-71 (73)
65 cd03076 GST_N_Pi GST_N family, 97.0 0.0043 9.3E-08 45.8 7.9 68 131-207 2-69 (73)
66 KOG3029 Glutathione S-transfer 97.0 0.0023 5E-08 61.1 7.7 83 130-223 90-178 (370)
67 cd03039 GST_N_Sigma_like GST_N 96.9 0.005 1.1E-07 44.9 7.0 68 132-207 2-69 (72)
68 TIGR00412 redox_disulf_2 small 96.8 0.0054 1.2E-07 46.1 6.8 54 131-198 3-60 (76)
69 cd03049 GST_N_3 GST_N family, 96.8 0.0058 1.3E-07 44.5 6.6 67 132-207 2-71 (73)
70 cd03048 GST_N_Ure2p_like GST_N 96.8 0.0086 1.9E-07 44.6 7.6 68 131-207 2-74 (81)
71 cd03080 GST_N_Metaxin_like GST 96.7 0.013 2.8E-07 43.4 8.2 68 131-208 2-70 (75)
72 PLN03165 chaperone protein dna 96.7 0.002 4.4E-08 53.3 3.9 51 225-275 40-93 (111)
73 PRK10387 glutaredoxin 2; Provi 96.7 0.0088 1.9E-07 51.5 8.0 69 131-209 1-70 (210)
74 cd03038 GST_N_etherase_LigE GS 96.6 0.0061 1.3E-07 45.9 6.0 65 141-208 12-79 (84)
75 PF13192 Thioredoxin_3: Thiore 96.6 0.023 5E-07 42.6 9.0 47 144-197 9-59 (76)
76 COG1393 ArsC Arsenate reductas 96.6 0.0034 7.4E-08 52.0 4.7 46 130-181 2-47 (117)
77 TIGR02182 GRXB Glutaredoxin, G 96.5 0.0094 2E-07 52.4 7.5 67 133-209 2-69 (209)
78 cd02975 PfPDO_like_N Pyrococcu 96.5 0.013 2.7E-07 47.3 7.6 55 127-193 21-81 (113)
79 cd03034 ArsC_ArsC Arsenate Red 96.3 0.0076 1.7E-07 48.9 5.0 45 131-181 1-45 (112)
80 cd03050 GST_N_Theta GST_N fami 96.3 0.028 6E-07 41.3 7.6 68 132-207 2-71 (76)
81 TIGR00014 arsC arsenate reduct 96.2 0.0082 1.8E-07 48.9 5.0 46 131-182 1-46 (114)
82 PRK10853 putative reductase; P 96.2 0.0078 1.7E-07 49.7 4.5 46 131-182 2-47 (118)
83 PRK10026 arsenate reductase; P 96.1 0.0095 2.1E-07 51.0 5.1 48 129-182 2-49 (141)
84 cd03043 GST_N_1 GST_N family, 96.1 0.027 5.9E-07 41.7 6.8 65 140-206 5-70 (73)
85 TIGR01616 nitro_assoc nitrogen 96.1 0.01 2.2E-07 49.7 5.0 46 130-181 2-47 (126)
86 cd03046 GST_N_GTT1_like GST_N 96.0 0.033 7.1E-07 40.4 6.9 68 132-208 2-71 (76)
87 cd01659 TRX_superfamily Thiore 96.0 0.034 7.4E-07 35.9 6.2 56 131-195 1-61 (69)
88 cd03044 GST_N_EF1Bgamma GST_N 95.9 0.039 8.5E-07 40.7 7.0 67 132-206 2-70 (75)
89 cd03057 GST_N_Beta GST_N famil 95.9 0.038 8.2E-07 40.6 6.7 67 132-207 2-71 (77)
90 PF13409 GST_N_2: Glutathione 95.9 0.013 2.7E-07 43.2 4.1 63 145-209 2-68 (70)
91 TIGR00862 O-ClC intracellular 95.9 0.052 1.1E-06 49.9 9.0 76 131-209 3-80 (236)
92 cd03047 GST_N_2 GST_N family, 95.8 0.053 1.1E-06 39.6 7.1 67 132-206 2-70 (73)
93 cd02947 TRX_family TRX family; 95.7 0.089 1.9E-06 37.7 7.9 56 131-198 14-76 (93)
94 TIGR01295 PedC_BrcD bacterioci 95.7 0.1 2.2E-06 43.0 9.1 69 128-201 23-106 (122)
95 PRK09481 sspA stringent starva 95.7 0.064 1.4E-06 46.9 8.4 68 130-206 10-77 (211)
96 COG4545 Glutaredoxin-related p 95.6 0.037 8.1E-07 43.5 6.0 67 132-205 5-82 (85)
97 TIGR03140 AhpF alkyl hydropero 95.6 0.021 4.5E-07 57.1 5.8 92 97-200 82-183 (515)
98 PRK15317 alkyl hydroperoxide r 95.6 0.022 4.8E-07 56.9 5.8 91 97-199 81-181 (517)
99 cd02953 DsbDgamma DsbD gamma f 95.4 0.067 1.4E-06 41.4 6.8 54 131-193 15-78 (104)
100 cd02957 Phd_like Phosducin (Ph 95.0 0.12 2.6E-06 41.1 7.4 66 129-207 25-98 (113)
101 TIGR02187 GlrX_arch Glutaredox 94.9 0.081 1.7E-06 47.0 6.8 57 128-196 134-195 (215)
102 PF03960 ArsC: ArsC family; I 94.9 0.068 1.5E-06 42.8 5.6 38 144-181 5-42 (110)
103 cd02949 TRX_NTR TRX domain, no 94.7 0.14 3.1E-06 39.3 6.8 57 131-199 17-81 (97)
104 PHA02278 thioredoxin-like prot 94.5 0.17 3.6E-06 40.6 7.0 60 131-198 18-85 (103)
105 cd03077 GST_N_Alpha GST_N fami 94.5 0.38 8.2E-06 36.1 8.5 70 131-207 2-71 (79)
106 PRK15113 glutathione S-transfe 94.0 0.27 5.8E-06 43.1 7.8 71 130-206 5-77 (214)
107 PLN02817 glutathione dehydroge 93.8 0.19 4.2E-06 46.6 7.0 61 144-207 72-132 (265)
108 PLN02378 glutathione S-transfe 93.5 0.23 5E-06 43.7 6.6 61 143-206 18-78 (213)
109 PLN02473 glutathione S-transfe 93.5 0.32 6.9E-06 42.1 7.4 69 131-207 3-73 (214)
110 PF00085 Thioredoxin: Thioredo 93.4 0.34 7.4E-06 36.3 6.5 61 128-199 17-85 (103)
111 cd02989 Phd_like_TxnDC9 Phosdu 93.4 0.59 1.3E-05 37.6 8.3 60 129-200 23-90 (113)
112 TIGR03143 AhpF_homolog putativ 93.1 0.18 3.9E-06 51.1 5.9 66 120-197 469-539 (555)
113 TIGR01262 maiA maleylacetoacet 93.1 0.22 4.7E-06 42.9 5.6 61 145-207 8-71 (210)
114 cd02954 DIM1 Dim1 family; Dim1 93.0 0.54 1.2E-05 38.9 7.7 57 131-199 18-82 (114)
115 TIGR01068 thioredoxin thioredo 92.9 1.1 2.3E-05 33.3 8.6 49 144-198 25-81 (101)
116 PF13098 Thioredoxin_2: Thiore 92.8 0.74 1.6E-05 35.6 7.9 68 130-205 8-106 (112)
117 PTZ00051 thioredoxin; Provisio 92.5 0.82 1.8E-05 34.5 7.6 57 131-199 22-85 (98)
118 COG0484 DnaJ DnaJ-class molecu 92.4 0.085 1.8E-06 51.9 2.4 50 226-275 142-204 (371)
119 KOG0910 Thioredoxin-like prote 92.3 0.18 4E-06 43.9 4.1 56 131-198 65-128 (150)
120 PRK11752 putative S-transferas 92.3 0.78 1.7E-05 42.1 8.5 73 125-206 39-123 (264)
121 TIGR02187 GlrX_arch Glutaredox 92.1 0.72 1.6E-05 40.9 7.8 63 126-198 18-90 (215)
122 cd02951 SoxW SoxW family; SoxW 92.1 0.8 1.7E-05 36.6 7.4 57 131-195 18-93 (125)
123 cd02965 HyaE HyaE family; HyaE 92.0 0.64 1.4E-05 38.4 6.8 65 127-201 27-99 (111)
124 PLN02395 glutathione S-transfe 91.8 0.74 1.6E-05 39.8 7.4 69 131-208 3-73 (215)
125 PRK09381 trxA thioredoxin; Pro 91.7 1 2.2E-05 34.9 7.4 57 131-199 25-89 (109)
126 cd02985 TRX_CDSP32 TRX family, 91.7 1.3 2.8E-05 34.6 8.1 60 130-198 18-84 (103)
127 KOG1422 Intracellular Cl- chan 91.6 0.63 1.4E-05 42.9 6.9 61 144-209 20-82 (221)
128 cd03079 GST_N_Metaxin2 GST_N f 91.5 0.52 1.1E-05 36.1 5.4 54 146-208 18-71 (74)
129 PF13719 zinc_ribbon_5: zinc-r 91.2 0.16 3.5E-06 33.9 2.1 29 237-265 2-33 (37)
130 PRK10996 thioredoxin 2; Provis 91.1 0.72 1.6E-05 38.4 6.3 56 131-198 56-119 (139)
131 PTZ00057 glutathione s-transfe 91.1 2.1 4.7E-05 37.2 9.6 71 129-206 3-77 (205)
132 cd02987 Phd_like_Phd Phosducin 90.9 1 2.2E-05 39.3 7.4 59 130-201 85-151 (175)
133 PRK10767 chaperone protein Dna 90.4 0.28 6E-06 47.6 3.7 50 226-275 142-202 (371)
134 KOG0406 Glutathione S-transfer 90.4 1.7 3.6E-05 40.4 8.6 71 129-207 8-78 (231)
135 PF00684 DnaJ_CXXCXGXG: DnaJ c 90.4 0.29 6.3E-06 36.3 3.0 41 235-275 13-63 (66)
136 KOG0907 Thioredoxin [Posttrans 90.2 1.1 2.5E-05 36.3 6.5 62 129-202 22-95 (106)
137 cd03065 PDI_b_Calsequestrin_N 89.9 1.9 4.1E-05 35.8 7.8 62 128-199 27-101 (120)
138 cd02984 TRX_PICOT TRX domain, 89.8 2.4 5.1E-05 31.8 7.7 56 131-198 18-81 (97)
139 cd03004 PDI_a_ERdj5_C PDIa fam 89.8 1.8 4E-05 33.1 7.2 53 131-195 23-83 (104)
140 PRK14287 chaperone protein Dna 89.8 0.31 6.7E-06 47.4 3.5 49 227-275 139-202 (371)
141 PRK14290 chaperone protein Dna 89.3 0.35 7.6E-06 46.9 3.5 49 227-275 150-212 (365)
142 PRK14300 chaperone protein Dna 89.3 0.36 7.9E-06 46.9 3.6 49 227-275 146-205 (372)
143 PRK13972 GSH-dependent disulfi 89.2 1.9 4.2E-05 37.6 7.7 67 131-206 2-77 (215)
144 cd02950 TxlA TRX-like protein 88.7 3.4 7.3E-05 34.6 8.6 79 131-221 24-114 (142)
145 cd02962 TMX2 TMX2 family; comp 88.6 2.2 4.8E-05 36.7 7.5 59 131-199 51-122 (152)
146 cd03075 GST_N_Mu GST_N family, 88.6 3.3 7.2E-05 31.3 7.7 61 146-206 10-76 (82)
147 COG0625 Gst Glutathione S-tran 88.4 1.3 2.9E-05 38.4 6.1 67 132-206 2-70 (211)
148 TIGR01126 pdi_dom protein disu 88.2 2 4.3E-05 32.1 6.3 52 130-193 16-75 (102)
149 cd02996 PDI_a_ERp44 PDIa famil 88.1 2 4.3E-05 33.4 6.4 54 131-196 22-89 (108)
150 cd02956 ybbN ybbN protein fami 88.0 2.5 5.5E-05 31.8 6.7 56 131-198 16-79 (96)
151 KOG2813 Predicted molecular ch 87.9 0.41 8.8E-06 46.7 2.8 21 227-247 188-208 (406)
152 PRK10357 putative glutathione 87.9 1.5 3.3E-05 37.6 6.1 65 132-205 2-67 (202)
153 cd03078 GST_N_Metaxin1_like GS 87.8 6.5 0.00014 29.4 8.8 61 139-209 10-70 (73)
154 cd02961 PDI_a_family Protein D 87.7 2.8 6E-05 30.6 6.7 51 130-192 18-76 (101)
155 TIGR02349 DnaJ_bact chaperone 87.2 0.58 1.3E-05 45.0 3.4 49 227-275 144-207 (354)
156 cd02994 PDI_a_TMX PDIa family, 87.2 2.6 5.6E-05 32.1 6.4 55 130-196 19-82 (101)
157 PRK14284 chaperone protein Dna 87.0 0.63 1.4E-05 45.6 3.6 50 226-275 158-218 (391)
158 COG3019 Predicted metal-bindin 87.0 5.7 0.00012 34.6 9.0 74 128-211 25-103 (149)
159 PRK14286 chaperone protein Dna 86.9 0.59 1.3E-05 45.5 3.3 49 227-275 151-210 (372)
160 PRK14285 chaperone protein Dna 86.8 0.68 1.5E-05 45.0 3.7 49 227-275 147-206 (365)
161 PRK14298 chaperone protein Dna 86.8 0.62 1.3E-05 45.5 3.4 49 227-275 142-205 (377)
162 cd03003 PDI_a_ERdj5_N PDIa fam 86.7 2.7 5.9E-05 32.1 6.4 54 131-196 22-83 (101)
163 PRK14289 chaperone protein Dna 86.7 0.57 1.2E-05 45.7 3.1 49 227-275 155-218 (386)
164 PRK14282 chaperone protein Dna 86.6 0.65 1.4E-05 45.1 3.4 49 227-275 153-216 (369)
165 PF06953 ArsD: Arsenical resis 86.5 3.1 6.7E-05 35.1 7.0 76 129-206 2-93 (123)
166 PRK14294 chaperone protein Dna 86.5 0.71 1.5E-05 44.8 3.6 49 227-275 145-204 (366)
167 cd02963 TRX_DnaJ TRX domain, D 86.0 5.2 0.00011 31.7 7.8 56 131-198 28-92 (111)
168 PRK14296 chaperone protein Dna 85.9 0.72 1.6E-05 45.0 3.4 49 227-275 150-213 (372)
169 PRK14295 chaperone protein Dna 85.8 0.73 1.6E-05 45.2 3.4 49 227-275 167-226 (389)
170 cd02959 ERp19 Endoplasmic reti 85.7 1.5 3.3E-05 35.6 4.7 60 131-199 23-91 (117)
171 PRK14291 chaperone protein Dna 85.6 0.78 1.7E-05 44.8 3.4 50 226-275 156-215 (382)
172 PRK14301 chaperone protein Dna 85.5 0.73 1.6E-05 44.9 3.2 49 227-275 145-204 (373)
173 PRK14292 chaperone protein Dna 85.3 0.77 1.7E-05 44.5 3.3 49 227-275 140-204 (371)
174 PRK14296 chaperone protein Dna 85.0 0.86 1.9E-05 44.5 3.4 37 227-269 167-218 (372)
175 PRK14280 chaperone protein Dna 84.8 0.95 2.1E-05 44.1 3.6 50 226-275 143-207 (376)
176 PRK14288 chaperone protein Dna 84.7 0.88 1.9E-05 44.3 3.4 49 227-275 141-199 (369)
177 PRK10542 glutathionine S-trans 84.6 2.6 5.6E-05 35.9 5.8 59 147-207 10-72 (201)
178 PRK14297 chaperone protein Dna 84.3 0.89 1.9E-05 44.3 3.2 50 226-275 148-212 (380)
179 PF07315 DUF1462: Protein of u 84.3 5 0.00011 32.5 6.8 52 149-200 19-80 (93)
180 cd03001 PDI_a_P5 PDIa family, 84.3 5.4 0.00012 30.0 6.9 50 131-192 22-77 (103)
181 COG0178 UvrA Excinuclease ATPa 84.3 1.2 2.7E-05 48.2 4.4 61 182-248 687-764 (935)
182 PRK14293 chaperone protein Dna 84.3 0.89 1.9E-05 44.2 3.1 49 227-275 144-207 (374)
183 PRK14278 chaperone protein Dna 84.1 1.1 2.4E-05 43.8 3.7 49 227-275 140-203 (378)
184 PRK14276 chaperone protein Dna 84.0 0.96 2.1E-05 44.1 3.3 50 226-275 146-210 (380)
185 PLN00410 U5 snRNP protein, DIM 84.0 6.6 0.00014 33.7 8.0 55 131-196 27-89 (142)
186 cd02948 TRX_NDPK TRX domain, T 83.8 6.5 0.00014 30.5 7.4 54 131-197 21-83 (102)
187 PF13717 zinc_ribbon_4: zinc-r 83.7 0.83 1.8E-05 30.4 1.9 29 237-265 2-33 (36)
188 PRK14288 chaperone protein Dna 83.2 1.3 2.8E-05 43.2 3.7 38 227-270 157-205 (369)
189 PRK14280 chaperone protein Dna 83.0 1.3 2.7E-05 43.3 3.6 37 227-269 161-212 (376)
190 PF02798 GST_N: Glutathione S- 83.0 9.8 0.00021 28.1 7.7 59 147-206 11-72 (76)
191 PRK14285 chaperone protein Dna 83.0 1.1 2.5E-05 43.4 3.3 38 227-270 164-212 (365)
192 PTZ00037 DnaJ_C chaperone prot 82.9 1.1 2.4E-05 44.7 3.2 49 227-275 151-215 (421)
193 cd03005 PDI_a_ERp46 PDIa famil 82.8 4 8.7E-05 30.7 5.7 56 130-197 19-85 (102)
194 PRK14281 chaperone protein Dna 82.8 1.2 2.5E-05 43.8 3.3 49 227-275 164-226 (397)
195 PRK14282 chaperone protein Dna 82.6 1.9 4E-05 42.0 4.6 38 227-270 170-222 (369)
196 cd02999 PDI_a_ERp44_like PDIa 82.4 4.8 0.00011 31.4 6.1 51 130-192 21-77 (100)
197 PRK14279 chaperone protein Dna 82.4 1.4 3E-05 43.4 3.6 49 227-275 174-233 (392)
198 PRK14284 chaperone protein Dna 82.3 1.5 3.2E-05 43.0 3.9 37 227-269 176-223 (391)
199 PRK14279 chaperone protein Dna 82.2 1.2 2.7E-05 43.7 3.2 38 227-270 191-239 (392)
200 PRK14277 chaperone protein Dna 82.2 1.3 2.8E-05 43.4 3.3 49 227-275 156-219 (386)
201 cd02998 PDI_a_ERp38 PDIa famil 82.1 4.9 0.00011 30.1 5.9 51 131-193 22-81 (105)
202 KOG4244 Failed axon connection 82.0 2.1 4.5E-05 40.8 4.5 68 129-206 44-112 (281)
203 PRK14301 chaperone protein Dna 82.0 1.3 2.8E-05 43.2 3.3 38 227-270 162-210 (373)
204 PF13901 DUF4206: Domain of un 81.8 0.28 6E-06 44.1 -1.3 87 187-275 102-196 (202)
205 PF10865 DUF2703: Domain of un 81.8 7.9 0.00017 32.5 7.4 67 142-233 12-89 (120)
206 PRK14283 chaperone protein Dna 81.8 1.3 2.9E-05 43.1 3.3 49 227-275 147-210 (378)
207 PRK14286 chaperone protein Dna 81.7 1.5 3.3E-05 42.7 3.7 38 227-270 168-216 (372)
208 PTZ00037 DnaJ_C chaperone prot 81.6 1.5 3.2E-05 43.8 3.5 40 227-270 167-221 (421)
209 TIGR00595 priA primosomal prot 81.5 1.4 3.1E-05 44.6 3.4 47 226-276 213-261 (505)
210 PRK14290 chaperone protein Dna 81.3 1.6 3.5E-05 42.3 3.6 38 227-270 166-218 (365)
211 PF00684 DnaJ_CXXCXGXG: DnaJ c 81.2 1.8 4E-05 32.0 3.1 37 226-267 15-66 (66)
212 PRK14276 chaperone protein Dna 81.1 1.4 3.1E-05 42.9 3.3 38 227-270 164-216 (380)
213 PRK14278 chaperone protein Dna 81.1 1.6 3.4E-05 42.7 3.5 38 227-270 157-209 (378)
214 PRK14277 chaperone protein Dna 81.0 1.6 3.6E-05 42.6 3.6 37 227-269 173-224 (386)
215 KOG0712 Molecular chaperone (D 80.9 1.3 2.9E-05 43.2 2.9 50 226-275 127-193 (337)
216 PRK14873 primosome assembly pr 80.4 2 4.3E-05 45.3 4.2 48 225-276 382-430 (665)
217 PRK14289 chaperone protein Dna 80.4 2.3 5.1E-05 41.5 4.5 39 226-270 171-224 (386)
218 PRK10767 chaperone protein Dna 80.4 1.8 3.9E-05 42.0 3.6 38 227-270 160-208 (371)
219 PRK14297 chaperone protein Dna 80.3 1.8 3.8E-05 42.3 3.6 37 227-269 166-217 (380)
220 PRK14294 chaperone protein Dna 80.0 1.8 3.8E-05 42.1 3.4 37 227-269 162-209 (366)
221 PF14595 Thioredoxin_9: Thiore 80.0 0.91 2E-05 38.0 1.3 63 122-193 36-103 (129)
222 PRK14295 chaperone protein Dna 79.9 2 4.3E-05 42.2 3.8 38 227-270 184-232 (389)
223 PRK14300 chaperone protein Dna 79.9 1.9 4.1E-05 42.0 3.6 37 227-269 163-210 (372)
224 PF15616 TerY-C: TerY-C metal 79.9 2.5 5.4E-05 36.1 3.9 39 227-269 78-117 (131)
225 TIGR02642 phage_xxxx uncharact 79.8 1.5 3.1E-05 39.5 2.6 26 226-251 99-129 (186)
226 PRK14298 chaperone protein Dna 79.6 1.8 3.9E-05 42.3 3.4 38 227-270 159-211 (377)
227 cd02952 TRP14_like Human TRX-r 79.5 4.1 8.8E-05 33.8 5.0 47 146-193 41-96 (119)
228 PRK14281 chaperone protein Dna 79.3 2 4.4E-05 42.2 3.7 38 227-270 180-232 (397)
229 TIGR02349 DnaJ_bact chaperone 79.1 2.1 4.5E-05 41.2 3.6 38 227-270 161-213 (354)
230 KOG1695 Glutathione S-transfer 78.7 7.3 0.00016 35.4 6.8 67 131-206 4-70 (206)
231 PRK10877 protein disulfide iso 78.6 16 0.00034 33.4 8.9 33 127-165 107-142 (232)
232 cd02988 Phd_like_VIAF Phosduci 78.1 6.5 0.00014 35.0 6.2 75 130-219 104-190 (192)
233 PF13728 TraF: F plasmid trans 77.8 5.3 0.00012 36.1 5.6 66 120-193 113-189 (215)
234 cd03002 PDI_a_MPD1_like PDI fa 77.8 5.9 0.00013 30.3 5.2 54 130-193 21-80 (109)
235 PF11009 DUF2847: Protein of u 77.6 14 0.0003 30.4 7.4 67 127-199 18-92 (105)
236 COG2999 GrxB Glutaredoxin 2 [P 77.6 2.1 4.6E-05 38.9 2.9 63 144-210 8-71 (215)
237 cd02986 DLP Dim1 family, Dim1- 76.9 11 0.00024 31.4 6.8 59 128-198 14-81 (114)
238 PTZ00443 Thioredoxin domain-co 76.1 13 0.00029 34.0 7.7 56 131-198 56-119 (224)
239 cd03006 PDI_a_EFP1_N PDIa fami 75.8 8.8 0.00019 31.2 5.9 56 130-196 32-95 (113)
240 cd02997 PDI_a_PDIR PDIa family 75.2 7.9 0.00017 29.1 5.2 56 131-196 21-86 (104)
241 PRK05580 primosome assembly pr 75.2 2.7 5.8E-05 44.2 3.4 47 226-276 381-429 (679)
242 cd03020 DsbA_DsbC_DsbG DsbA fa 74.1 27 0.00059 30.3 8.9 35 127-167 77-113 (197)
243 cd03000 PDI_a_TMX3 PDIa family 73.7 13 0.00027 28.7 6.1 53 131-195 19-81 (104)
244 PRK14287 chaperone protein Dna 73.6 3 6.5E-05 40.6 3.1 38 227-270 156-208 (371)
245 PF11331 DUF3133: Protein of u 73.3 1.7 3.7E-05 30.9 0.9 34 233-266 2-40 (46)
246 KOG2813 Predicted molecular ch 73.0 2 4.4E-05 42.0 1.7 52 225-276 197-264 (406)
247 cd02972 DsbA_family DsbA famil 72.4 14 0.00029 26.6 5.7 32 131-168 1-38 (98)
248 PRK00293 dipZ thiol:disulfide 72.0 18 0.0004 37.3 8.5 56 130-193 476-540 (571)
249 TIGR02642 phage_xxxx uncharact 71.8 3.2 6.9E-05 37.3 2.6 31 236-270 98-128 (186)
250 cd02993 PDI_a_APS_reductase PD 71.5 14 0.0003 28.9 6.0 54 129-192 23-83 (109)
251 COG3340 PepE Peptidase E [Amin 71.5 21 0.00045 33.2 7.8 83 129-222 32-117 (224)
252 cd02955 SSP411 TRX domain, SSP 71.3 16 0.00035 30.3 6.6 64 129-199 16-95 (124)
253 PRK12336 translation initiatio 71.1 10 0.00023 34.1 5.7 33 236-268 97-130 (201)
254 COG4837 Uncharacterized protei 70.9 28 0.00061 28.6 7.5 75 127-206 3-94 (106)
255 PRK14283 chaperone protein Dna 70.5 5.6 0.00012 38.8 4.2 37 227-269 164-215 (378)
256 COG3118 Thioredoxin domain-con 70.5 9.7 0.00021 36.8 5.6 62 128-201 43-113 (304)
257 PRK14291 chaperone protein Dna 70.4 4.4 9.5E-05 39.6 3.4 36 227-269 174-220 (382)
258 PRK14292 chaperone protein Dna 70.3 4.4 9.5E-05 39.3 3.4 38 226-269 157-209 (371)
259 PF08271 TF_Zn_Ribbon: TFIIB z 69.5 4.1 8.9E-05 27.6 2.2 24 239-263 2-25 (43)
260 TIGR02098 MJ0042_CXXC MJ0042 f 68.9 4.3 9.4E-05 26.5 2.1 28 238-265 3-33 (38)
261 cd03023 DsbA_Com1_like DsbA fa 68.9 4.5 9.8E-05 32.3 2.7 60 149-208 86-150 (154)
262 PF13462 Thioredoxin_4: Thiore 68.7 9.4 0.0002 31.1 4.6 21 186-206 135-155 (162)
263 COG5494 Predicted thioredoxin/ 67.9 8.8 0.00019 35.8 4.6 57 130-198 12-70 (265)
264 PRK14293 chaperone protein Dna 67.8 5.3 0.00011 38.9 3.4 37 227-269 161-212 (374)
265 cd02995 PDI_a_PDI_a'_C PDIa fa 67.6 16 0.00034 27.3 5.3 51 130-193 21-79 (104)
266 PRK13728 conjugal transfer pro 67.1 23 0.0005 31.6 7.0 67 130-202 72-159 (181)
267 COG0484 DnaJ DnaJ-class molecu 66.2 8.7 0.00019 38.1 4.5 38 227-270 160-210 (371)
268 cd03022 DsbA_HCCA_Iso DsbA fam 66.0 9.1 0.0002 32.2 4.1 60 149-208 124-188 (192)
269 cd02982 PDI_b'_family Protein 64.8 18 0.00039 27.3 5.2 53 131-193 16-74 (103)
270 cd02992 PDI_a_QSOX PDIa family 64.6 16 0.00035 29.2 5.1 53 131-193 23-84 (114)
271 TIGR02740 TraF-like TraF-like 64.0 15 0.00034 34.2 5.6 65 121-193 160-235 (271)
272 PF00731 AIRC: AIR carboxylase 63.6 27 0.00059 30.4 6.6 38 130-171 2-39 (150)
273 PRK04023 DNA polymerase II lar 63.6 6.1 0.00013 43.8 3.1 45 225-276 625-671 (1121)
274 COG3634 AhpF Alkyl hydroperoxi 63.1 25 0.00053 35.6 6.9 72 120-200 109-182 (520)
275 PRK14714 DNA polymerase II lar 62.6 5.9 0.00013 44.8 2.8 44 226-276 667-717 (1337)
276 cd03009 TryX_like_TryX_NRX Try 61.2 45 0.00098 26.5 7.2 35 130-170 20-64 (131)
277 PLN03165 chaperone protein dna 61.1 6.5 0.00014 32.7 2.2 19 228-246 77-95 (111)
278 TIGR00630 uvra excinuclease AB 61.0 6.9 0.00015 42.9 3.0 23 226-248 736-770 (924)
279 KOG2767 Translation initiation 60.4 6.6 0.00014 38.9 2.4 76 176-270 41-131 (400)
280 PF06764 DUF1223: Protein of u 60.2 47 0.001 30.1 7.7 66 131-202 2-86 (202)
281 COG1198 PriA Primosomal protei 59.9 8.9 0.00019 41.1 3.5 47 226-276 435-483 (730)
282 PF10568 Tom37: Outer mitochon 58.8 55 0.0012 24.7 6.8 54 144-207 13-70 (72)
283 smart00834 CxxC_CXXC_SSSS Puta 58.7 6.1 0.00013 25.8 1.4 27 239-265 7-34 (41)
284 KOG0867 Glutathione S-transfer 58.2 34 0.00074 30.8 6.6 69 130-206 2-72 (226)
285 PF09297 zf-NADH-PPase: NADH p 58.1 7.6 0.00016 24.8 1.7 24 240-265 6-29 (32)
286 PF13899 Thioredoxin_7: Thiore 57.0 66 0.0014 23.8 7.0 54 128-193 17-79 (82)
287 cd03031 GRX_GRX_like Glutaredo 56.2 9.9 0.00022 32.7 2.6 7 268-274 133-139 (147)
288 cd02964 TryX_like_family Trypa 55.8 64 0.0014 25.9 7.2 36 130-171 19-64 (132)
289 KOG0868 Glutathione S-transfer 54.8 30 0.00066 31.7 5.5 72 130-209 5-79 (217)
290 PHA00626 hypothetical protein 54.5 10 0.00022 28.4 2.0 16 259-274 13-29 (59)
291 PF08792 A2L_zn_ribbon: A2L zi 54.5 9 0.00019 25.2 1.6 24 239-264 5-28 (33)
292 PF14205 Cys_rich_KTR: Cystein 53.4 15 0.00033 27.1 2.8 35 235-269 2-40 (55)
293 TIGR00108 eRF peptide chain re 53.3 5.9 0.00013 39.3 0.9 56 194-249 290-358 (409)
294 KOG4420 Uncharacterized conser 52.9 13 0.00027 35.8 2.9 72 131-210 27-100 (325)
295 cd03010 TlpA_like_DsbE TlpA-li 52.8 91 0.002 24.5 7.6 36 131-172 29-68 (127)
296 PTZ00062 glutaredoxin; Provisi 52.1 48 0.001 30.0 6.5 52 128-199 17-76 (204)
297 TIGR02739 TraF type-F conjugat 50.8 16 0.00034 34.4 3.2 66 120-193 143-219 (256)
298 PF14354 Lar_restr_allev: Rest 50.8 14 0.00031 26.3 2.4 28 237-265 3-37 (61)
299 TIGR01162 purE phosphoribosyla 49.7 57 0.0012 28.7 6.3 65 144-208 10-99 (156)
300 smart00653 eIF2B_5 domain pres 49.4 16 0.00034 30.2 2.6 29 236-264 79-108 (110)
301 PRK13703 conjugal pilus assemb 49.2 17 0.00037 34.0 3.1 66 120-193 136-212 (248)
302 KOG2324 Prolyl-tRNA synthetase 48.7 12 0.00025 37.6 2.1 33 238-270 228-260 (457)
303 PRK03988 translation initiatio 48.6 19 0.00041 30.9 3.1 34 236-269 101-135 (138)
304 TIGR00311 aIF-2beta translatio 48.3 20 0.00043 30.6 3.2 34 236-269 96-130 (133)
305 PF07092 DUF1356: Protein of u 48.0 9 0.00019 35.9 1.1 28 226-253 27-54 (238)
306 PF12172 DUF35_N: Rubredoxin-l 46.6 8.1 0.00018 25.3 0.5 19 227-245 12-33 (37)
307 PRK02935 hypothetical protein; 46.5 12 0.00027 31.1 1.6 26 237-266 70-95 (110)
308 TIGR00424 APS_reduc 5'-adenyly 46.4 57 0.0012 33.2 6.6 55 131-195 375-438 (463)
309 PRK15412 thiol:disulfide inter 45.9 1.1E+02 0.0024 26.3 7.6 36 131-172 72-110 (185)
310 PF01873 eIF-5_eIF-2B: Domain 45.9 13 0.00028 31.4 1.6 68 173-265 51-122 (125)
311 PF01323 DSBA: DSBA-like thior 45.9 13 0.00029 31.2 1.8 60 149-208 124-189 (193)
312 cd03019 DsbA_DsbA DsbA family, 45.7 13 0.00027 30.9 1.6 54 149-202 100-158 (178)
313 PRK12775 putative trifunctiona 45.3 25 0.00055 38.8 4.2 90 186-275 718-845 (1006)
314 PTZ00102 disulphide isomerase; 44.9 64 0.0014 31.3 6.6 55 130-196 52-117 (477)
315 TIGR00385 dsbE periplasmic pro 44.8 1.2E+02 0.0026 25.7 7.5 27 144-170 74-103 (173)
316 PRK00398 rpoP DNA-directed RNA 44.8 19 0.00041 24.7 2.1 9 257-265 21-29 (46)
317 TIGR01130 ER_PDI_fam protein d 44.7 72 0.0015 30.5 6.8 55 131-197 22-87 (462)
318 PRK11509 hydrogenase-1 operon 44.7 1.8E+02 0.0039 24.7 8.4 63 130-201 36-107 (132)
319 COG1107 Archaea-specific RecJ- 44.5 15 0.00032 38.9 2.1 43 226-268 53-106 (715)
320 PRK00635 excinuclease ABC subu 44.0 27 0.00058 41.2 4.3 51 197-248 1574-1641(1809)
321 smart00594 UAS UAS domain. 43.7 1.2E+02 0.0027 24.3 7.1 55 130-194 29-94 (122)
322 PRK03564 formate dehydrogenase 43.2 28 0.0006 33.7 3.7 13 234-246 209-221 (309)
323 cd03007 PDI_a_ERp29_N PDIa fam 43.1 1.7E+02 0.0038 24.1 8.0 64 130-196 21-91 (116)
324 KOG2487 RNA polymerase II tran 42.9 79 0.0017 30.6 6.5 151 73-248 121-298 (314)
325 PF01096 TFIIS_C: Transcriptio 42.5 13 0.00028 25.0 0.9 28 238-265 1-36 (39)
326 cd01480 vWA_collagen_alpha_1-V 42.3 1.3E+02 0.0028 25.7 7.4 68 127-196 108-184 (186)
327 TIGR03676 aRF1/eRF1 peptide ch 42.1 15 0.00032 36.6 1.7 56 194-249 286-354 (403)
328 PF12760 Zn_Tnp_IS1595: Transp 41.7 26 0.00057 24.0 2.4 24 240-264 21-44 (46)
329 PRK10954 periplasmic protein d 41.1 27 0.00058 30.8 3.0 53 149-203 124-183 (207)
330 TIGR02738 TrbB type-F conjugat 41.0 1.3E+02 0.0029 25.7 7.2 36 128-169 51-90 (153)
331 PF11287 DUF3088: Protein of u 40.8 62 0.0013 27.1 4.9 53 141-196 20-77 (112)
332 PRK04023 DNA polymerase II lar 40.7 19 0.00041 40.2 2.3 15 149-163 505-519 (1121)
333 smart00659 RPOLCX RNA polymera 40.6 21 0.00045 24.9 1.8 26 239-267 4-29 (44)
334 PF14803 Nudix_N_2: Nudix N-te 40.6 17 0.00037 24.1 1.3 26 240-265 3-30 (34)
335 PRK00564 hypA hydrogenase nick 40.5 28 0.0006 28.8 2.8 22 226-247 71-98 (117)
336 PF03833 PolC_DP2: DNA polymer 40.3 9.4 0.0002 41.6 0.0 43 226-275 655-699 (900)
337 cd02958 UAS UAS family; UAS is 40.1 62 0.0013 25.4 4.7 57 129-194 18-84 (114)
338 PRK04011 peptide chain release 39.9 16 0.00034 36.4 1.5 56 194-249 294-362 (411)
339 PF09413 DUF2007: Domain of un 39.5 21 0.00046 25.7 1.8 53 131-196 1-53 (67)
340 COG1107 Archaea-specific RecJ- 39.3 20 0.00044 37.9 2.2 14 237-250 53-66 (715)
341 PRK00349 uvrA excinuclease ABC 39.0 22 0.00048 39.2 2.6 24 225-248 737-772 (943)
342 cd03146 GAT1_Peptidase_E Type 38.9 58 0.0013 28.9 4.9 86 121-219 23-109 (212)
343 smart00440 ZnF_C2C2 C2C2 Zinc 38.9 28 0.0006 23.6 2.2 27 239-265 2-36 (40)
344 PRK03147 thiol-disulfide oxido 38.9 1.4E+02 0.0031 24.5 7.0 28 144-171 72-106 (173)
345 TIGR01562 FdhE formate dehydro 38.4 33 0.00071 33.2 3.3 11 236-246 209-219 (305)
346 PLN02309 5'-adenylylsulfate re 38.4 61 0.0013 32.9 5.4 54 129-193 367-428 (457)
347 KOG1829 Uncharacterized conser 38.1 8.9 0.00019 40.1 -0.6 120 145-265 393-539 (580)
348 PF11023 DUF2614: Protein of u 37.8 16 0.00034 30.7 1.0 27 236-266 68-94 (114)
349 KOG0908 Thioredoxin-like prote 37.1 61 0.0013 31.1 4.8 71 121-203 15-95 (288)
350 PF04566 RNA_pol_Rpb2_4: RNA p 36.9 29 0.00063 25.8 2.2 20 191-210 1-20 (63)
351 PF04236 Transp_Tc5_C: Tc5 tra 36.3 24 0.00052 26.5 1.7 21 255-275 25-47 (63)
352 PF03575 Peptidase_S51: Peptid 36.1 1.3E+02 0.0028 25.2 6.3 22 149-170 3-24 (154)
353 COG0041 PurE Phosphoribosylcar 35.8 1.1E+02 0.0025 27.1 6.0 62 145-206 15-101 (162)
354 PF04134 DUF393: Protein of un 35.0 81 0.0018 24.7 4.6 65 144-210 6-76 (114)
355 PRK11788 tetratricopeptide rep 34.8 23 0.00049 32.8 1.6 35 213-247 341-378 (389)
356 PF09334 tRNA-synt_1g: tRNA sy 34.6 51 0.0011 32.4 4.1 33 147-179 70-102 (391)
357 COG5242 TFB4 RNA polymerase II 34.6 73 0.0016 30.2 4.9 94 73-183 112-207 (296)
358 PRK12495 hypothetical protein; 34.4 82 0.0018 29.4 5.1 12 226-237 42-53 (226)
359 KOG4684 Uncharacterized conser 34.3 17 0.00037 34.0 0.7 21 254-274 167-195 (275)
360 PLN02189 cellulose synthase 33.9 26 0.00057 39.1 2.1 38 226-264 34-83 (1040)
361 TIGR03655 anti_R_Lar restricti 33.7 34 0.00075 24.2 2.1 30 238-267 2-36 (53)
362 PF08273 Prim_Zn_Ribbon: Zinc- 33.4 38 0.00083 23.3 2.2 29 236-264 2-33 (40)
363 TIGR00595 priA primosomal prot 33.3 31 0.00067 35.1 2.4 35 226-267 222-263 (505)
364 PF09788 Tmemb_55A: Transmembr 32.9 33 0.00071 32.5 2.3 36 233-268 61-96 (256)
365 cd03129 GAT1_Peptidase_E_like 32.7 2.6E+02 0.0056 24.5 7.9 89 121-220 21-111 (210)
366 PF13905 Thioredoxin_8: Thiore 32.4 1.4E+02 0.0031 21.9 5.5 34 131-170 5-46 (95)
367 PF04216 FdhE: Protein involve 32.4 28 0.0006 32.6 1.8 35 226-266 172-220 (290)
368 PF09788 Tmemb_55A: Transmembr 31.6 26 0.00057 33.2 1.5 10 266-275 175-184 (256)
369 PF15643 Tox-PL-2: Papain fold 31.1 64 0.0014 26.6 3.4 51 144-199 20-73 (100)
370 TIGR03826 YvyF flagellar opero 30.5 1.2E+02 0.0026 26.0 5.2 84 129-246 10-103 (137)
371 COG4049 Uncharacterized protei 30.2 31 0.00067 25.9 1.4 17 248-264 8-24 (65)
372 COG4332 Uncharacterized protei 29.6 34 0.00074 31.2 1.8 50 223-275 14-71 (203)
373 cd03024 DsbA_FrnE DsbA family, 29.5 1.3E+02 0.0029 25.4 5.4 58 149-206 132-195 (201)
374 COG5429 Uncharacterized secret 29.5 89 0.0019 29.7 4.5 28 175-202 101-129 (261)
375 PLN02436 cellulose synthase A 29.5 37 0.00081 38.1 2.4 38 226-264 36-85 (1094)
376 KOG4022 Dihydropteridine reduc 29.3 2.9E+02 0.0064 25.3 7.6 77 128-213 3-99 (236)
377 PRK00415 rps27e 30S ribosomal 29.3 60 0.0013 24.3 2.8 27 238-265 12-38 (59)
378 cd03008 TryX_like_RdCVF Trypar 29.1 1.8E+02 0.0039 24.9 6.1 39 129-172 26-78 (146)
379 PLN02234 1-deoxy-D-xylulose-5- 29.1 1.2E+02 0.0026 32.2 5.9 79 129-218 545-629 (641)
380 PF01396 zf-C4_Topoisom: Topoi 28.8 61 0.0013 21.7 2.5 25 238-262 2-26 (39)
381 PRK14714 DNA polymerase II lar 28.2 52 0.0011 37.7 3.2 38 226-266 679-718 (1337)
382 PF13453 zf-TFIIB: Transcripti 28.0 45 0.00097 22.3 1.8 25 240-264 2-26 (41)
383 PLN02638 cellulose synthase A 27.9 33 0.00072 38.5 1.7 38 226-264 17-66 (1079)
384 COG1571 Predicted DNA-binding 27.0 30 0.00065 35.0 1.1 137 120-265 203-375 (421)
385 cd02966 TlpA_like_family TlpA- 26.8 2.5E+02 0.0053 20.3 7.5 35 130-170 22-63 (116)
386 smart00778 Prim_Zn_Ribbon Zinc 26.5 56 0.0012 22.1 2.0 30 236-265 2-33 (37)
387 PF08534 Redoxin: Redoxin; In 26.3 3.3E+02 0.0073 21.7 7.0 43 131-179 32-82 (146)
388 PRK06319 DNA topoisomerase I/S 26.3 83 0.0018 34.4 4.3 9 226-234 592-600 (860)
389 TIGR00100 hypA hydrogenase nic 26.2 51 0.0011 27.1 2.1 22 226-247 70-96 (115)
390 PTZ00102 disulphide isomerase; 26.2 1.1E+02 0.0023 29.8 4.8 51 130-192 378-436 (477)
391 COG0551 TopA Zn-finger domain 26.2 73 0.0016 26.5 3.1 40 226-265 17-68 (140)
392 cd02970 PRX_like2 Peroxiredoxi 26.2 3.3E+02 0.0071 21.4 7.4 44 145-192 36-86 (149)
393 PF05180 zf-DNL: DNL zinc fing 26.1 27 0.00059 26.6 0.4 30 240-269 7-41 (66)
394 smart00531 TFIIE Transcription 25.8 30 0.00065 29.3 0.7 10 235-244 97-106 (147)
395 PTZ00408 NAD-dependent deacety 25.3 40 0.00086 31.1 1.5 42 228-270 108-150 (242)
396 PF09526 DUF2387: Probable met 25.3 70 0.0015 24.5 2.6 26 240-265 11-38 (71)
397 cd02967 mauD Methylamine utili 25.3 3E+02 0.0066 20.8 6.5 53 131-192 25-83 (114)
398 PRK09710 lar restriction allev 25.2 74 0.0016 24.2 2.6 30 238-267 7-37 (64)
399 PF07295 DUF1451: Protein of u 25.1 67 0.0015 27.8 2.8 35 234-270 109-143 (146)
400 PRK00420 hypothetical protein; 25.0 44 0.00096 27.8 1.6 11 256-266 39-49 (112)
401 PF10122 Mu-like_Com: Mu-like 24.9 34 0.00075 24.9 0.8 7 268-274 24-30 (51)
402 PRK14892 putative transcriptio 24.6 47 0.001 27.1 1.6 9 236-244 20-28 (99)
403 COG2260 Predicted Zn-ribbon RN 24.5 37 0.00081 25.4 0.9 19 257-275 5-24 (59)
404 PF09822 ABC_transp_aux: ABC-t 24.3 1.9E+02 0.004 26.3 5.7 63 120-183 18-86 (271)
405 PLN02400 cellulose synthase 24.2 54 0.0012 36.9 2.4 38 226-264 36-85 (1085)
406 TIGR01130 ER_PDI_fam protein d 23.9 1.4E+02 0.003 28.5 4.9 50 130-193 367-425 (462)
407 PRK00635 excinuclease ABC subu 23.6 91 0.002 37.1 4.2 52 196-248 686-751 (1809)
408 cd03017 PRX_BCP Peroxiredoxin 23.5 3.6E+02 0.0077 21.2 6.6 43 145-191 36-85 (140)
409 PRK09437 bcp thioredoxin-depen 23.3 3E+02 0.0065 22.4 6.3 54 129-191 31-92 (154)
410 PRK07220 DNA topoisomerase I; 23.0 97 0.0021 33.2 4.0 49 227-275 590-664 (740)
411 TIGR02443 conserved hypothetic 22.7 88 0.0019 23.5 2.6 25 240-264 12-38 (59)
412 PF07449 HyaE: Hydrogenase-1 e 22.5 4.3E+02 0.0092 21.7 6.9 73 128-207 26-104 (107)
413 PRK14890 putative Zn-ribbon RN 22.5 56 0.0012 24.5 1.5 6 228-233 9-14 (59)
414 cd03019 DsbA_DsbA DsbA family, 22.2 1.6E+02 0.0035 24.1 4.5 36 127-168 15-56 (178)
415 PF14319 Zn_Tnp_IS91: Transpos 22.1 56 0.0012 26.7 1.6 21 227-247 43-70 (111)
416 PRK11032 hypothetical protein; 22.1 83 0.0018 27.8 2.8 35 234-270 121-155 (160)
417 PRK12380 hydrogenase nickel in 21.9 53 0.0011 26.9 1.4 7 259-265 88-94 (113)
418 PF10087 DUF2325: Uncharacteri 21.8 3.4E+02 0.0073 21.0 6.0 54 122-179 42-95 (97)
419 PF10571 UPF0547: Uncharacteri 21.7 55 0.0012 20.4 1.1 6 258-263 15-20 (26)
420 KOG3192 Mitochondrial J-type c 21.5 1.3E+02 0.0027 27.0 3.7 34 148-181 72-105 (168)
421 COG5347 GTPase-activating prot 21.5 41 0.00089 32.7 0.8 35 217-251 11-54 (319)
422 PLN02915 cellulose synthase A 21.4 58 0.0013 36.5 2.0 39 225-264 14-64 (1044)
423 smart00661 RPOL9 RNA polymeras 21.2 79 0.0017 21.5 2.0 7 258-264 21-27 (52)
424 cd03008 TryX_like_RdCVF Trypar 21.2 5.2E+02 0.011 22.0 8.7 59 130-198 65-126 (146)
425 PF13408 Zn_ribbon_recom: Reco 21.0 1.6E+02 0.0034 20.1 3.6 36 236-272 4-40 (58)
426 COG1365 Predicted ATPase (PP-l 20.8 1.3E+02 0.0029 28.3 4.0 48 129-183 61-111 (255)
427 COG2143 Thioredoxin-related pr 20.7 2.6E+02 0.0056 25.3 5.5 64 125-196 40-125 (182)
428 PF10058 DUF2296: Predicted in 20.7 77 0.0017 23.0 1.9 30 236-265 21-52 (54)
429 PRK11827 hypothetical protein; 20.7 99 0.0022 23.1 2.5 27 237-265 8-34 (60)
430 COG3585 MopI Molybdopterin-bin 20.6 23 0.00051 27.2 -0.8 15 63-77 3-17 (69)
431 cd05295 MDH_like Malate dehydr 20.6 2.8E+02 0.006 28.3 6.5 67 142-208 1-81 (452)
432 COG5216 Uncharacterized conser 20.5 60 0.0013 24.6 1.3 25 239-264 24-51 (67)
433 cd00079 HELICc Helicase superf 20.3 3.9E+02 0.0084 20.2 7.5 49 127-182 27-75 (131)
434 PF04438 zf-HIT: HIT zinc fing 20.1 52 0.0011 21.1 0.8 18 258-275 3-20 (30)
435 COG2835 Uncharacterized conser 20.0 97 0.0021 23.3 2.4 28 237-266 8-35 (60)
No 1
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-53 Score=392.85 Aligned_cols=156 Identities=56% Similarity=1.045 Sum_probs=148.1
Q ss_pred ccccCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCC--CCCCCcEEEeCCEE
Q 048504 120 SSIRLPGTEDRIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGG--KNVTLPQVFIRGKH 197 (277)
Q Consensus 120 ~~i~~~~~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~--~~~tvPqVFI~G~~ 197 (277)
....+|+++++||||+|+++|||+||++|..||+||++++|.|+||||+||..|++||++++|. ...++|+|||+|+|
T Consensus 122 ~~~~~Pgge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~Gry 201 (281)
T KOG2824|consen 122 KEVCPPGGEDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRY 201 (281)
T ss_pred hhcCCCCCCceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEE
Confidence 4567799999999999999999999999999999999999999999999999999999999997 67999999999999
Q ss_pred EechhHHHHHHhhccHHHHhcCCCCCCCCCCCCCCCccceEeCCCCCCcceeee--CCCCcceeCCCCCcCceeeCCCCC
Q 048504 198 VGNADVLKSMYETGELARVLDGFPRRQPGFVCGSCGDVRFVPCGNCSGSRKVFD--EADGVPKRCLECNENGLIRCPDCC 275 (277)
Q Consensus 198 IGG~del~~L~EsGeL~klL~~~~~~~~~~~C~~CGg~rfVpC~~C~GS~Kv~~--~~~~~~~rC~~CNEnGLvrCp~C~ 275 (277)
|||++++++|||.|+|.+||+++| ..+...|++|||.||+||..||||+|++. +++++++||++||||||||||.|+
T Consensus 202 IGgaeeV~~LnE~GkL~~lL~~~p-~~~~~~C~~CGg~rFlpC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvrCp~Cs 280 (281)
T KOG2824|consen 202 IGGAEEVVRLNEEGKLGKLLKGIP-CEGGGVCESCGGARFLPCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVRCPVCS 280 (281)
T ss_pred eccHHHhhhhhhcchHHHHHhcCC-CCCCCcCCCcCCcceEecCCCCCceeeeeeccCCCcEEECcccCCCCceeCCccC
Confidence 999999999999999999999999 45568999999999999999999999998 667789999999999999999997
Q ss_pred C
Q 048504 276 S 276 (277)
Q Consensus 276 ~ 276 (277)
.
T Consensus 281 ~ 281 (281)
T KOG2824|consen 281 N 281 (281)
T ss_pred C
Confidence 3
No 2
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=100.00 E-value=2.5e-51 Score=349.57 Aligned_cols=142 Identities=54% Similarity=1.003 Sum_probs=136.1
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCC--CCCCCcEEEeCCEEEechhHHHHH
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGG--KNVTLPQVFIRGKHVGNADVLKSM 207 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~--~~~tvPqVFI~G~~IGG~del~~L 207 (277)
+|||||||+++||+|||+|.+||+||++++|+|+|+||+||+++++||++++|. ++.++|||||+|+||||+|++++|
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999975 358999999999999999999999
Q ss_pred HhhccHHHHhcCCCCCCCCCCCCCCCccceEeCCCCCCcceeeeCC---CCcceeCCCCCcCceeeC
Q 048504 208 YETGELARVLDGFPRRQPGFVCGSCGDVRFVPCGNCSGSRKVFDEA---DGVPKRCLECNENGLIRC 271 (277)
Q Consensus 208 ~EsGeL~klL~~~~~~~~~~~C~~CGg~rfVpC~~C~GS~Kv~~~~---~~~~~rC~~CNEnGLvrC 271 (277)
||+|+|+++|+.++...+...|++|||.|||||.+|+||+|+|.++ .+.++||++|||||||||
T Consensus 81 ~e~G~L~~lL~~~~~~~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~~c 147 (147)
T cd03031 81 NESGELRKLLKGIRARAGGGVCEGCGGARFVPCSECNGSCKVFAENATAAGGFLRCPECNENGLVRC 147 (147)
T ss_pred HHcCCHHHHHhhcccccCCCCCCCCCCcCeEECCCCCCcceEEeccCcccccEEECCCCCccccccC
Confidence 9999999999999888888899999999999999999999999877 477999999999999999
No 3
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.91 E-value=2.8e-24 Score=170.32 Aligned_cols=88 Identities=19% Similarity=0.233 Sum_probs=84.7
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCC--CCCCCcEEEeCCEEEechhHHHHHH
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGG--KNVTLPQVFIRGKHVGNADVLKSMY 208 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~--~~~tvPqVFI~G~~IGG~del~~L~ 208 (277)
|+||+||++|+|++...|++|++||++++|+|+|+||++|++.+++|++++|. +..++|||||+|+||||+|++.+|+
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l~ 81 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAK 81 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999874 4589999999999999999999999
Q ss_pred hhccHHHHhc
Q 048504 209 ETGELARVLD 218 (277)
Q Consensus 209 EsGeL~klL~ 218 (277)
++|+|.++|+
T Consensus 82 e~g~L~~lLk 91 (92)
T cd03030 82 ENNTLEEFLK 91 (92)
T ss_pred hCCCHHHHhC
Confidence 9999999986
No 4
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.88 E-value=1.4e-22 Score=160.73 Aligned_cols=95 Identities=22% Similarity=0.340 Sum_probs=85.8
Q ss_pred ccccCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEe
Q 048504 120 SSIRLPGTEDRIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVG 199 (277)
Q Consensus 120 ~~i~~~~~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IG 199 (277)
+++...+.+++||||+++. .-+..||+|.+|+++|+.+||+|+++||..+++.+++|++++|. .++|||||||++||
T Consensus 3 ~~v~~~i~~~~Vvvf~kg~-~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~--~tvP~vfi~g~~iG 79 (97)
T TIGR00365 3 ERIKEQIKENPVVLYMKGT-PQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNW--PTIPQLYVKGEFVG 79 (97)
T ss_pred HHHHHHhccCCEEEEEccC-CCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCC--CCCCEEEECCEEEe
Confidence 3456678899999998864 23457899999999999999999999999999999999999986 79999999999999
Q ss_pred chhHHHHHHhhccHHHHh
Q 048504 200 NADVLKSMYETGELARVL 217 (277)
Q Consensus 200 G~del~~L~EsGeL~klL 217 (277)
|+|++.+|+++|+|.++|
T Consensus 80 G~ddl~~l~~~g~L~~~l 97 (97)
T TIGR00365 80 GCDIIMEMYQSGELQTLL 97 (97)
T ss_pred ChHHHHHHHHCcChHHhC
Confidence 999999999999999986
No 5
>PRK10824 glutaredoxin-4; Provisional
Probab=99.87 E-value=3.5e-22 Score=164.50 Aligned_cols=100 Identities=19% Similarity=0.263 Sum_probs=89.4
Q ss_pred ccccCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEe
Q 048504 120 SSIRLPGTEDRIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVG 199 (277)
Q Consensus 120 ~~i~~~~~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IG 199 (277)
+++...+.+++||||+++. .-+..||+|.+|+++|+.++|+|.++||..|++.+++|++++|. +|+|||||||+|||
T Consensus 6 ~~v~~~I~~~~Vvvf~Kg~-~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~--~TVPQIFI~G~~IG 82 (115)
T PRK10824 6 EKIQRQIAENPILLYMKGS-PKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANW--PTFPQLWVDGELVG 82 (115)
T ss_pred HHHHHHHhcCCEEEEECCC-CCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCC--CCCCeEEECCEEEc
Confidence 4567778899999999863 22346799999999999999999999999999999999999976 89999999999999
Q ss_pred chhHHHHHHhhccHHHHhcCCCC
Q 048504 200 NADVLKSMYETGELARVLDGFPR 222 (277)
Q Consensus 200 G~del~~L~EsGeL~klL~~~~~ 222 (277)
|+|++.+|+++|+|+++|+.+..
T Consensus 83 G~ddl~~l~~~G~L~~lL~~~~~ 105 (115)
T PRK10824 83 GCDIVIEMYQRGELQQLIKETAA 105 (115)
T ss_pred ChHHHHHHHHCCCHHHHHHHHHh
Confidence 99999999999999999976543
No 6
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.86 E-value=9.9e-22 Score=156.39 Aligned_cols=90 Identities=20% Similarity=0.272 Sum_probs=80.0
Q ss_pred CCCCCCcEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHH---HHHHHHHHhCCCCCCCcEEEeCCEEEec
Q 048504 124 LPGTEDRIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSA---YKKELQCVFGGKNVTLPQVFIRGKHVGN 200 (277)
Q Consensus 124 ~~~~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~---~reELke~lG~~~~tvPqVFI~G~~IGG 200 (277)
..+.+++|+||++++| |+|.+|+++|++++|+|+++||+.+++ ++++|.+++|. .++|||||+|++|||
T Consensus 3 ~~i~~~~Vvvysk~~C------p~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~--~tvP~Vfi~g~~iGG 74 (99)
T TIGR02189 3 RMVSEKAVVIFSRSSC------CMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCS--PAVPAVFVGGKLVGG 74 (99)
T ss_pred hhhccCCEEEEECCCC------HHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCC--CCcCeEEECCEEEcC
Confidence 3467899999999875 899999999999999999999998855 55667777776 899999999999999
Q ss_pred hhHHHHHHhhccHHHHhcCCC
Q 048504 201 ADVLKSMYETGELARVLDGFP 221 (277)
Q Consensus 201 ~del~~L~EsGeL~klL~~~~ 221 (277)
++++.+|+++|+|+++|+.++
T Consensus 75 ~ddl~~l~~~G~L~~~l~~~~ 95 (99)
T TIGR02189 75 LENVMALHISGSLVPMLKQAG 95 (99)
T ss_pred HHHHHHHHHcCCHHHHHHHhC
Confidence 999999999999999998654
No 7
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.85 E-value=5.5e-21 Score=148.86 Aligned_cols=89 Identities=24% Similarity=0.312 Sum_probs=79.6
Q ss_pred cCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechh
Q 048504 123 RLPGTEDRIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNAD 202 (277)
Q Consensus 123 ~~~~~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~d 202 (277)
+..+.+++||||+++. .-...||+|.+|+++|+.++|+|+++||..|++++++|.+++|. .++|+|||||++|||++
T Consensus 2 ~~~i~~~~vvvf~k~~-~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~--~tvP~vfi~g~~iGG~~ 78 (90)
T cd03028 2 KKLIKENPVVLFMKGT-PEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNW--PTFPQLYVNGELVGGCD 78 (90)
T ss_pred hhhhccCCEEEEEcCC-CCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCC--CCCCEEEECCEEEeCHH
Confidence 3456789999998853 12346899999999999999999999999999999999999987 79999999999999999
Q ss_pred HHHHHHhhccHH
Q 048504 203 VLKSMYETGELA 214 (277)
Q Consensus 203 el~~L~EsGeL~ 214 (277)
++++||++|+|+
T Consensus 79 ~l~~l~~~g~L~ 90 (90)
T cd03028 79 IVKEMHESGELQ 90 (90)
T ss_pred HHHHHHHcCCcC
Confidence 999999999984
No 8
>PHA03050 glutaredoxin; Provisional
Probab=99.85 E-value=4.5e-21 Score=155.54 Aligned_cols=95 Identities=14% Similarity=0.269 Sum_probs=85.8
Q ss_pred ccccCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHHhCCC---eEEEEECCC---CHHHHHHHHHHhCCCCCCCcEEEe
Q 048504 120 SSIRLPGTEDRIVVYLTSLRGIRRTFEDCYAVRMIFRGFRV---WVDERDVSM---DSAYKKELQCVFGGKNVTLPQVFI 193 (277)
Q Consensus 120 ~~i~~~~~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV---~y~ErDVs~---d~~~reELke~lG~~~~tvPqVFI 193 (277)
.++...+..++|+||++++| |||.+|+++|+.++| +|+++||+. +.+++++|.+++|. .+||+|||
T Consensus 4 ~~v~~~i~~~~V~vys~~~C------PyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~--~tVP~IfI 75 (108)
T PHA03050 4 EFVQQRLANNKVTIFVKFTC------PFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG--RTVPRIFF 75 (108)
T ss_pred HHHHHHhccCCEEEEECCCC------hHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCC--CCcCEEEE
Confidence 34556677899999999975 899999999999999 799999986 57889999999987 79999999
Q ss_pred CCEEEechhHHHHHHhhccHHHHhcCCCC
Q 048504 194 RGKHVGNADVLKSMYETGELARVLDGFPR 222 (277)
Q Consensus 194 ~G~~IGG~del~~L~EsGeL~klL~~~~~ 222 (277)
||++|||++++++||++|+|.++|+.++.
T Consensus 76 ~g~~iGG~ddl~~l~~~g~L~~~l~~~~~ 104 (108)
T PHA03050 76 GKTSIGGYSDLLEIDNMDALGDILSSIGV 104 (108)
T ss_pred CCEEEeChHHHHHHHHcCCHHHHHHHccc
Confidence 99999999999999999999999987654
No 9
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.81 E-value=1.2e-19 Score=136.13 Aligned_cols=79 Identities=28% Similarity=0.420 Sum_probs=74.9
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHHHhh
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSMYET 210 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L~Es 210 (277)
|+||++++ ||+|.+|+.+|++++|+|+++||+++++.++++.+++|. .++|+|||+|++|||++++.+|+++
T Consensus 1 v~ly~~~~------Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~--~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPY------CPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGR--RTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCC------ChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCC--CCcCEEEECCEEEcChHHHHHHHHc
Confidence 68999986 589999999999999999999999999999999999885 8999999999999999999999999
Q ss_pred ccHHHHh
Q 048504 211 GELARVL 217 (277)
Q Consensus 211 GeL~klL 217 (277)
|+|+++|
T Consensus 73 g~l~~~l 79 (79)
T TIGR02181 73 GKLDPLL 79 (79)
T ss_pred CChhhhC
Confidence 9999886
No 10
>PRK10638 glutaredoxin 3; Provisional
Probab=99.81 E-value=2.9e-19 Score=136.29 Aligned_cols=82 Identities=24% Similarity=0.398 Sum_probs=77.1
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHHH
Q 048504 129 DRIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSMY 208 (277)
Q Consensus 129 ~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L~ 208 (277)
.+|+||++++ |++|.+|+.+|+.++|+|+++||+.+++.++++.++.|. .++|+||+||++|||++++.+|+
T Consensus 2 ~~v~ly~~~~------Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~--~~vP~i~~~g~~igG~~~~~~~~ 73 (83)
T PRK10638 2 ANVEIYTKAT------CPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGR--TTVPQIFIDAQHIGGCDDLYALD 73 (83)
T ss_pred CcEEEEECCC------ChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCC--CCcCEEEECCEEEeCHHHHHHHH
Confidence 4799999986 589999999999999999999999998889999999987 79999999999999999999999
Q ss_pred hhccHHHHhc
Q 048504 209 ETGELARVLD 218 (277)
Q Consensus 209 EsGeL~klL~ 218 (277)
++|+|..+|+
T Consensus 74 ~~g~l~~~~~ 83 (83)
T PRK10638 74 ARGGLDPLLK 83 (83)
T ss_pred HcCCHHHHhC
Confidence 9999999984
No 11
>PTZ00062 glutaredoxin; Provisional
Probab=99.79 E-value=1.5e-19 Score=161.71 Aligned_cols=98 Identities=19% Similarity=0.319 Sum_probs=88.4
Q ss_pred ccccccCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEE
Q 048504 118 NESSIRLPGTEDRIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKH 197 (277)
Q Consensus 118 ~~~~i~~~~~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~ 197 (277)
...++...+..++|+||.++.. -...|++|++++.+|+.++|+|.++||..|++.+++|++++|. .|+|||||||++
T Consensus 102 ~~~~v~~li~~~~Vvvf~Kg~~-~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~--~TvPqVfI~G~~ 178 (204)
T PTZ00062 102 TVEKIERLIRNHKILLFMKGSK-TFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNW--PTYPQLYVNGEL 178 (204)
T ss_pred HHHHHHHHHhcCCEEEEEccCC-CCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCC--CCCCeEEECCEE
Confidence 4467888899999999999521 1147899999999999999999999999999999999999976 899999999999
Q ss_pred EechhHHHHHHhhccHHHHhc
Q 048504 198 VGNADVLKSMYETGELARVLD 218 (277)
Q Consensus 198 IGG~del~~L~EsGeL~klL~ 218 (277)
|||+|++++|+++|+|+++|.
T Consensus 179 IGG~d~l~~l~~~G~L~~~l~ 199 (204)
T PTZ00062 179 IGGHDIIKELYESNSLRKVIP 199 (204)
T ss_pred EcChHHHHHHHHcCChhhhhh
Confidence 999999999999999999985
No 12
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=7.5e-19 Score=142.57 Aligned_cols=93 Identities=27% Similarity=0.395 Sum_probs=80.9
Q ss_pred cccCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCC---HHHHHHHHHHhCCCCCCCcEEEeCCEE
Q 048504 121 SIRLPGTEDRIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMD---SAYKKELQCVFGGKNVTLPQVFIRGKH 197 (277)
Q Consensus 121 ~i~~~~~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d---~~~reELke~lG~~~~tvPqVFI~G~~ 197 (277)
.+...+.+++||||++++| ++|.+++.+|..+++.+..++++.+ .+++++|.+++|+ +|+|+|||+|++
T Consensus 6 ~v~~~i~~~~VVifSKs~C------~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~--~tvP~vFI~Gk~ 77 (104)
T KOG1752|consen 6 KVRKMISENPVVIFSKSSC------PYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQ--RTVPNVFIGGKF 77 (104)
T ss_pred HHHHHhhcCCEEEEECCcC------chHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCC--CCCCEEEECCEE
Confidence 4667788999999999975 8999999999999998766666544 3677888888877 799999999999
Q ss_pred EechhHHHHHHhhccHHHHhcCCC
Q 048504 198 VGNADVLKSMYETGELARVLDGFP 221 (277)
Q Consensus 198 IGG~del~~L~EsGeL~klL~~~~ 221 (277)
|||++++++||.+|+|..+|+.+.
T Consensus 78 iGG~~dl~~lh~~G~L~~~l~~~~ 101 (104)
T KOG1752|consen 78 IGGASDLMALHKSGELVPLLKEAG 101 (104)
T ss_pred EcCHHHHHHHHHcCCHHHHHHHhh
Confidence 999999999999999999998654
No 13
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.76 E-value=5.1e-18 Score=125.12 Aligned_cols=75 Identities=28% Similarity=0.443 Sum_probs=69.2
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHHHh
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSMYE 209 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L~E 209 (277)
+|+||+++. |++|.+|+.+|+.++|+|+++||+.+++.+++|.++.|. ..++|+|||+|++|||++++.+||+
T Consensus 1 ~i~ly~~~~------Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~-~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPN------CPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGG-RRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCC------ChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCC-CCccCEEEECCEEEeChHHHHHHHh
Confidence 589999986 589999999999999999999999999999999998876 1399999999999999999999999
Q ss_pred hc
Q 048504 210 TG 211 (277)
Q Consensus 210 sG 211 (277)
+|
T Consensus 74 ~g 75 (75)
T cd03418 74 KG 75 (75)
T ss_pred Cc
Confidence 87
No 14
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.76 E-value=5.1e-18 Score=126.09 Aligned_cols=73 Identities=33% Similarity=0.423 Sum_probs=68.4
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHHH
Q 048504 129 DRIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSMY 208 (277)
Q Consensus 129 ~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L~ 208 (277)
++|+||++++| ++|.+|+++|+.++|+|+++||..++..+++|++++|. .++|+|||||++|||+++|.+|+
T Consensus 1 ~~v~ly~~~~C------~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~--~~vP~v~i~~~~iGg~~~~~~~~ 72 (73)
T cd03027 1 GRVTIYSRLGC------EDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGS--SVVPQIFFNEKLVGGLTDLKSLE 72 (73)
T ss_pred CEEEEEecCCC------hhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCC--CCcCEEEECCEEEeCHHHHHhhc
Confidence 47999999865 89999999999999999999999999999999999986 78999999999999999999987
Q ss_pred h
Q 048504 209 E 209 (277)
Q Consensus 209 E 209 (277)
|
T Consensus 73 ~ 73 (73)
T cd03027 73 E 73 (73)
T ss_pred C
Confidence 5
No 15
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.70 E-value=6.8e-17 Score=120.47 Aligned_cols=79 Identities=28% Similarity=0.479 Sum_probs=70.0
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCe--EEEEECCCC---HHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHH
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVW--VDERDVSMD---SAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLK 205 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~--y~ErDVs~d---~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~ 205 (277)
|++|++++| |+|.+++.+|++++++ |..+||+.+ .+.+++|.+..|. .++|+|||||++|||++++.
T Consensus 1 V~~f~~~~C------p~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~--~~vP~v~i~g~~igg~~~~~ 72 (84)
T TIGR02180 1 VVVFSKSYC------PYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQ--RTVPNIFINGKFIGGCSDLL 72 (84)
T ss_pred CEEEECCCC------hhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCC--CCCCeEEECCEEEcCHHHHH
Confidence 689999875 8999999999999998 877777654 4567778888876 79999999999999999999
Q ss_pred HHHhhccHHHHh
Q 048504 206 SMYETGELARVL 217 (277)
Q Consensus 206 ~L~EsGeL~klL 217 (277)
+|+++|+|+++|
T Consensus 73 ~~~~~g~l~~~~ 84 (84)
T TIGR02180 73 ALYKSGKLAELL 84 (84)
T ss_pred HHHHcCChhhhC
Confidence 999999999886
No 16
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=4.3e-17 Score=131.67 Aligned_cols=99 Identities=22% Similarity=0.305 Sum_probs=89.7
Q ss_pred cccccCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHHhCC-CeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEE
Q 048504 119 ESSIRLPGTEDRIVVYLTSLRGIRRTFEDCYAVRMIFRGFR-VWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKH 197 (277)
Q Consensus 119 ~~~i~~~~~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~g-V~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~ 197 (277)
.+.|...+.+++||||.+.. .-.+.|-+..+|-+||...| ++|..+||-.|+++|+.|++.. +|.|+||+||+|++
T Consensus 5 ~~~I~~~i~~n~VvLFMKGt-p~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s--~WPT~PQLyi~GEf 81 (105)
T COG0278 5 LDRIQKQIKENPVVLFMKGT-PEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYS--NWPTFPQLYVNGEF 81 (105)
T ss_pred HHHHHHHhhcCceEEEecCC-CCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhc--CCCCCceeeECCEE
Confidence 35677888999999999976 34566778899999999999 8999999999999999999998 57999999999999
Q ss_pred EechhHHHHHHhhccHHHHhcCC
Q 048504 198 VGNADVLKSMYETGELARVLDGF 220 (277)
Q Consensus 198 IGG~del~~L~EsGeL~klL~~~ 220 (277)
|||+|-+.+|+++|+|+++|+..
T Consensus 82 vGG~DIv~Em~q~GELq~~l~~~ 104 (105)
T COG0278 82 VGGCDIVREMYQSGELQTLLKEA 104 (105)
T ss_pred eccHHHHHHHHHcchHHHHHHhc
Confidence 99999999999999999999753
No 17
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.68 E-value=1.9e-16 Score=118.09 Aligned_cols=79 Identities=27% Similarity=0.447 Sum_probs=70.0
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCC---HHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHH
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMD---SAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKS 206 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d---~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~ 206 (277)
+|++|++.+ ||+|.+|+.+|+.++++|.++|++.+ .++++++++++|. .++|+||++|++|||++++.+
T Consensus 1 ~v~~y~~~~------Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~--~~~P~v~~~g~~igg~~~~~~ 72 (82)
T cd03419 1 PVVVFSKSY------CPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQ--RTVPNVFIGGKFIGGCDDLMA 72 (82)
T ss_pred CEEEEEcCC------CHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCC--CCCCeEEECCEEEcCHHHHHH
Confidence 589999986 58999999999999999887777655 4567888898876 899999999999999999999
Q ss_pred HHhhccHHHH
Q 048504 207 MYETGELARV 216 (277)
Q Consensus 207 L~EsGeL~kl 216 (277)
|.++|+|+++
T Consensus 73 ~~~~g~l~~~ 82 (82)
T cd03419 73 LHKSGKLVKL 82 (82)
T ss_pred HHHcCCccCC
Confidence 9999999763
No 18
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.8e-16 Score=121.97 Aligned_cols=76 Identities=29% Similarity=0.427 Sum_probs=67.0
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCH--HHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHH
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDS--AYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSM 207 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~--~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L 207 (277)
.|+||+++. ||+|.+|+++|+.+||.|+++|+.+++ +.++.+++..|. +++|||||||++|||.+++.++
T Consensus 2 ~v~iyt~~~------CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~--~tvP~I~i~~~~igg~~d~~~~ 73 (80)
T COG0695 2 NVTIYTKPG------CPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQ--RTVPQIFIGGKHVGGCDDLDAL 73 (80)
T ss_pred CEEEEECCC------CchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCC--CCcCEEEECCEEEeCcccHHHH
Confidence 589999986 589999999999999999999999987 555555555566 8999999999999999999999
Q ss_pred HhhccH
Q 048504 208 YETGEL 213 (277)
Q Consensus 208 ~EsGeL 213 (277)
+..|.|
T Consensus 74 ~~~~~l 79 (80)
T COG0695 74 EAKGKL 79 (80)
T ss_pred HhhccC
Confidence 988876
No 19
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.66 E-value=5.1e-16 Score=114.85 Aligned_cols=70 Identities=23% Similarity=0.409 Sum_probs=62.8
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHHH
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSMY 208 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L~ 208 (277)
+|+||++++ ||+|.+|+++|+.++|+|+++||+.+. ..++++++.|. .++|+|||||++|||+++|.++.
T Consensus 2 ~v~lys~~~------Cp~C~~ak~~L~~~~i~~~~~~v~~~~-~~~~~~~~~g~--~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKPG------CPFCARAKAALQENGISYEEIPLGKDI-TGRSLRAVTGA--MTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECCC------CHHHHHHHHHHHHcCCCcEEEECCCCh-hHHHHHHHhCC--CCcCeEEECCEEEeCHHHHHHHh
Confidence 699999986 589999999999999999999999887 45677888776 89999999999999999998764
No 20
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.66 E-value=7.9e-16 Score=109.53 Aligned_cols=72 Identities=29% Similarity=0.507 Sum_probs=67.5
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHHHh
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSMYE 209 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L~E 209 (277)
+|+||++++ |++|++|+.+|+.++++|.++|+..+++.+++|++++|. .++|+||+||++|||++++++|++
T Consensus 1 ~v~ly~~~~------Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~--~~~P~~~~~~~~igg~~~~~~~~~ 72 (72)
T cd02066 1 KVVVFSKST------CPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGW--PTVPQIFINGEFIGGYDDLKALHE 72 (72)
T ss_pred CEEEEECCC------CHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCC--CCcCEEEECCEEEecHHHHHHhhC
Confidence 589999987 589999999999999999999999999999999999986 899999999999999999999875
No 21
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.64 E-value=6.4e-16 Score=124.53 Aligned_cols=89 Identities=26% Similarity=0.367 Sum_probs=74.0
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhC-------CCCCCCcEEEeCCEEEechh
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFG-------GKNVTLPQVFIRGKHVGNAD 202 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG-------~~~~tvPqVFI~G~~IGG~d 202 (277)
.|.||+|+..|.++.-..++++..||++++|+|+++||++|++.++.+++..| .+...+||||+||+|+|++|
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE 81 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence 38899999999999999999999999999999999999999999999999985 23356689999999999999
Q ss_pred HHHHHHhhccHHHHhc
Q 048504 203 VLKSMYETGELARVLD 218 (277)
Q Consensus 203 el~~L~EsGeL~klL~ 218 (277)
++.+++|.|+|.++|+
T Consensus 82 ~f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 82 DFEEANENGELEEFLK 97 (99)
T ss_dssp HHHHHHCTT-HHHHHT
T ss_pred HHHHHHhhCHHHHHhC
Confidence 9999999999999996
No 22
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.64 E-value=1.6e-15 Score=115.02 Aligned_cols=73 Identities=26% Similarity=0.390 Sum_probs=64.4
Q ss_pred CCCCcEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHH
Q 048504 126 GTEDRIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLK 205 (277)
Q Consensus 126 ~~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~ 205 (277)
.+.++|+||++++| ++|.+||++|+.+||+|+++||+.+... +++.+++|. .++|+|||||++|||+++|.
T Consensus 5 ~~~~~V~ly~~~~C------p~C~~ak~~L~~~gi~y~~idi~~~~~~-~~~~~~~g~--~~vP~i~i~g~~igG~~~l~ 75 (79)
T TIGR02190 5 RKPESVVVFTKPGC------PFCAKAKATLKEKGYDFEEIPLGNDARG-RSLRAVTGA--TTVPQVFIGGKLIGGSDELE 75 (79)
T ss_pred CCCCCEEEEECCCC------HhHHHHHHHHHHcCCCcEEEECCCChHH-HHHHHHHCC--CCcCeEEECCEEEcCHHHHH
Confidence 45788999999875 8999999999999999999999987554 567777776 89999999999999999998
Q ss_pred HH
Q 048504 206 SM 207 (277)
Q Consensus 206 ~L 207 (277)
++
T Consensus 76 ~~ 77 (79)
T TIGR02190 76 AY 77 (79)
T ss_pred HH
Confidence 75
No 23
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.64 E-value=1.7e-15 Score=115.70 Aligned_cols=75 Identities=17% Similarity=0.256 Sum_probs=67.5
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHh-----CCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHH
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRG-----FRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVL 204 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~-----~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del 204 (277)
+|+||++++ |++|.+|+++|+. .+|+|+++||..+...+++|.++.|....++|||||||++|||+++|
T Consensus 2 ~v~iy~~~~------C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~ 75 (85)
T PRK11200 2 FVVIFGRPG------CPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDF 75 (85)
T ss_pred EEEEEeCCC------ChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHH
Confidence 699999986 5899999999999 89999999999887778899998875447999999999999999999
Q ss_pred HHHHhh
Q 048504 205 KSMYET 210 (277)
Q Consensus 205 ~~L~Es 210 (277)
.++++.
T Consensus 76 ~~~~~~ 81 (85)
T PRK11200 76 EAYVKE 81 (85)
T ss_pred HHHHHH
Confidence 998764
No 24
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.64 E-value=1.6e-15 Score=117.11 Aligned_cols=75 Identities=19% Similarity=0.325 Sum_probs=65.6
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHH
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGF-----RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLK 205 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~-----gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~ 205 (277)
|+||++++ ||+|.+|+++|+.+ +++|+++|+..+...+++|.++.|....++|+|||||++|||+++|.
T Consensus 2 V~vys~~~------Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~ 75 (86)
T TIGR02183 2 VVIFGRPG------CPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFE 75 (86)
T ss_pred EEEEeCCC------CccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHH
Confidence 79999986 58999999999998 46799999998776678899988753369999999999999999999
Q ss_pred HHHhhc
Q 048504 206 SMYETG 211 (277)
Q Consensus 206 ~L~EsG 211 (277)
++++.+
T Consensus 76 ~~~~~~ 81 (86)
T TIGR02183 76 QLVKEN 81 (86)
T ss_pred HHHHhc
Confidence 998764
No 25
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.1e-14 Score=132.06 Aligned_cols=97 Identities=21% Similarity=0.292 Sum_probs=88.7
Q ss_pred ccccCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEe
Q 048504 120 SSIRLPGTEDRIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVG 199 (277)
Q Consensus 120 ~~i~~~~~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IG 199 (277)
+++...+..++|+||-++.. -.+-|-+.+.+..||+.++|+|...||..|.++|+-|++.. .|.|+|||||+|++||
T Consensus 130 ~~l~~lv~a~~v~lFmKG~p-~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fS--dWPTfPQlyI~GEFiG 206 (227)
T KOG0911|consen 130 NRLEKLVKAKPVMLFMKGTP-EEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFS--DWPTFPQLYVKGEFIG 206 (227)
T ss_pred HHHHHhcccCeEEEEecCCC-CcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhc--CCCCccceeECCEecc
Confidence 48888999999999999863 34556677899999999999999999999999999999998 5799999999999999
Q ss_pred chhHHHHHHhhccHHHHhcC
Q 048504 200 NADVLKSMYETGELARVLDG 219 (277)
Q Consensus 200 G~del~~L~EsGeL~klL~~ 219 (277)
|.|-+.+||++|+|+..|+.
T Consensus 207 GlDIl~~m~~~geL~~~l~~ 226 (227)
T KOG0911|consen 207 GLDILKEMHEKGELVYTLKE 226 (227)
T ss_pred CcHHHHHHhhcccHHHHhhc
Confidence 99999999999999999975
No 26
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.54 E-value=3.2e-14 Score=101.91 Aligned_cols=60 Identities=32% Similarity=0.435 Sum_probs=56.4
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEE
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHV 198 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~I 198 (277)
|+||++.+ |++|.+++++|+++||+|+++||+.+++.+++|+++.|. .++|+|||||++|
T Consensus 1 V~vy~~~~------C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~--~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPG------CPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGV--RTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTT------SHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSS--SSSSEEEETTEEE
T ss_pred cEEEEcCC------CcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCC--CccCEEEECCEEC
Confidence 78999975 689999999999999999999999999999999999976 8999999999987
No 27
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.50 E-value=9.6e-14 Score=135.12 Aligned_cols=84 Identities=19% Similarity=0.218 Sum_probs=71.0
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHH--------hCCCCCCCcEEEeCCEEEec
Q 048504 129 DRIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCV--------FGGKNVTLPQVFIRGKHVGN 200 (277)
Q Consensus 129 ~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~--------lG~~~~tvPqVFI~G~~IGG 200 (277)
.+|+||++++ ||+|.+||++|+.+||+|+++||+.++...+.+.+. +|. .++|||||||++|||
T Consensus 2 ~~V~vys~~~------Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~--~tvP~ifi~~~~igG 73 (410)
T PRK12759 2 VEVRIYTKTN------CPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHI--RTVPQIFVGDVHIGG 73 (410)
T ss_pred CcEEEEeCCC------CHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCC--CccCeEEECCEEEeC
Confidence 4799999996 589999999999999999999999887544322222 344 799999999999999
Q ss_pred hhHHHHHHhhccHHHHhcCCCC
Q 048504 201 ADVLKSMYETGELARVLDGFPR 222 (277)
Q Consensus 201 ~del~~L~EsGeL~klL~~~~~ 222 (277)
++++.+ .+|+|..+|++.+-
T Consensus 74 f~~l~~--~~g~l~~~~~~~~~ 93 (410)
T PRK12759 74 YDNLMA--RAGEVIARVKGSSL 93 (410)
T ss_pred chHHHH--HhCCHHHHhcCCcc
Confidence 999987 89999999998553
No 28
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.35 E-value=3.2e-12 Score=94.99 Aligned_cols=64 Identities=13% Similarity=0.176 Sum_probs=56.8
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCE-EEechhH
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGK-HVGNADV 203 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~-~IGG~de 203 (277)
|+||+++. |++|.+|+++|++++|+|+++||..|+..++++++. |. .++|+||++|. +|||++.
T Consensus 1 v~ly~~~~------Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~-g~--~~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 1 ITVYSKNN------CVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQ-GF--RQVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CEEEeCCC------CHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHc-CC--cccCEEEECCCcEEeccCH
Confidence 68999986 589999999999999999999999999999988764 75 79999999775 9999864
No 29
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.35 E-value=7e-12 Score=96.59 Aligned_cols=65 Identities=17% Similarity=0.126 Sum_probs=58.8
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhH
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADV 203 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~de 203 (277)
+|+||++++ |++|.++|.+|+.+||+|+++||+.+++..++++. .|. .++|+|+++|..|+|++.
T Consensus 2 ~v~lYt~~~------Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~g~--~~vPvv~i~~~~~~Gf~~ 66 (81)
T PRK10329 2 RITIYTRND------CVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-QGF--RQLPVVIAGDLSWSGFRP 66 (81)
T ss_pred EEEEEeCCC------CHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCC--CCcCEEEECCEEEecCCH
Confidence 699999986 58999999999999999999999999988888876 465 799999999999999863
No 30
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.13 E-value=6.1e-10 Score=79.62 Aligned_cols=66 Identities=26% Similarity=0.328 Sum_probs=59.7
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhH
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADV 203 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~de 203 (277)
+|+||+.++| ++|++++.+|+.++|+|.++|+..++...+++.++.|. .++|.++++|+.++|++.
T Consensus 1 ~i~lf~~~~C------~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~--~~vP~~~~~~~~~~g~~~ 66 (74)
T TIGR02196 1 KVKVYTTPWC------PPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQ--RGVPVIVIGHKIIVGFDP 66 (74)
T ss_pred CEEEEcCCCC------hhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCC--CcccEEEECCEEEeeCCH
Confidence 4899999875 79999999999999999999999998888899998876 789999999999988754
No 31
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.03 E-value=1.8e-09 Score=77.11 Aligned_cols=66 Identities=23% Similarity=0.269 Sum_probs=59.3
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhH
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADV 203 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~de 203 (277)
+|++|+..+| ++|.+++.+|+..+++|..+|++.+....+++.++.+. .++|+|+++|+.|+|.+.
T Consensus 1 ~v~l~~~~~c------~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~--~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTKPDC------PYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGY--RSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeCCCC------hhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCC--cccCEEEECCEEEecCCH
Confidence 4899999865 79999999999999999999999888888888888764 799999999999999875
No 32
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.81 E-value=4.7e-08 Score=71.35 Aligned_cols=65 Identities=22% Similarity=0.268 Sum_probs=55.6
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHh-CCCCCCCcEEEe-CCEEEechh
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVF-GGKNVTLPQVFI-RGKHVGNAD 202 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~l-G~~~~tvPqVFI-~G~~IGG~d 202 (277)
+|+||++++| ++|++++.+|+.++++|+.+|++.++...++++++. |. .++|+|++ +|..+....
T Consensus 1 ~v~ly~~~~C------~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~--~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 1 TITVYGTTWC------GYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGN--MTVPTVKFADGSFLTNPS 67 (77)
T ss_pred CEEEEECCCC------hhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCC--ceeCEEEECCCeEecCCC
Confidence 4899999975 799999999999999999999999888888888886 54 79999976 667776654
No 33
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=7.6e-08 Score=78.19 Aligned_cols=94 Identities=18% Similarity=0.186 Sum_probs=80.9
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhC------CCCCCCcEEEeCCEEEechhH
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFG------GKNVTLPQVFIRGKHVGNADV 203 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG------~~~~tvPqVFI~G~~IGG~de 203 (277)
.|.||+++..|.+.+-..-.++..+|+...|.|+++||.+..+.++++..... .+....||||-+++|.||||.
T Consensus 3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye~ 82 (108)
T KOG4023|consen 3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYEL 82 (108)
T ss_pred ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHHH
Confidence 48899999999888888889999999999999999999988777666554431 113789999999999999999
Q ss_pred HHHHHhhccHHHHhcCCCCC
Q 048504 204 LKSMYETGELARVLDGFPRR 223 (277)
Q Consensus 204 l~~L~EsGeL~klL~~~~~~ 223 (277)
+.+..|...|...|..+|..
T Consensus 83 F~ea~E~ntl~eFL~lap~~ 102 (108)
T KOG4023|consen 83 FFEAVEQNTLQEFLGLAPPP 102 (108)
T ss_pred HHHHHHHHHHHHHHccCCCc
Confidence 99999999999999988764
No 34
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.61 E-value=1.4e-07 Score=68.18 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=49.1
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEec
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGF-----RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGN 200 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~-----gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG 200 (277)
+|++|++++| ++|.+++.+|+.+ +|.|..+|++.++ ++.+.+|. .++|+|+|+|++++-
T Consensus 2 ~v~~f~~~~C------~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~----~l~~~~~i--~~vPti~i~~~~~~~ 65 (67)
T cd02973 2 NIEVFVSPTC------PYCPDAVQAANRIAALNPNISAEMIDAAEFP----DLADEYGV--MSVPAIVINGKVEFV 65 (67)
T ss_pred EEEEEECCCC------CCcHHHHHHHHHHHHhCCceEEEEEEcccCH----hHHHHcCC--cccCEEEECCEEEEe
Confidence 5899999975 7999999999875 6999999998774 45666765 789999999998863
No 35
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.48 E-value=1.3e-06 Score=65.37 Aligned_cols=71 Identities=14% Similarity=0.075 Sum_probs=57.4
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEe--CCEEEechhHHHHHH
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFI--RGKHVGNADVLKSMY 208 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI--~G~~IGG~del~~L~ 208 (277)
++||+.+.| ++|.+|+.+|+.+||+|+++|+..+....+++.+..+. .++|.+.. +|..+.+...+.+..
T Consensus 2 ~~Ly~~~~s------p~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~--~~vP~l~~~~~~~~l~es~~I~~yL 73 (77)
T cd03041 2 LELYEFEGS------PFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGK--VQVPYLVDPNTGVQMFESADIVKYL 73 (77)
T ss_pred ceEecCCCC------chHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCC--CcccEEEeCCCCeEEEcHHHHHHHH
Confidence 679998864 79999999999999999999998776567788877654 78999976 367778777776644
Q ss_pred h
Q 048504 209 E 209 (277)
Q Consensus 209 E 209 (277)
+
T Consensus 74 ~ 74 (77)
T cd03041 74 F 74 (77)
T ss_pred H
Confidence 3
No 36
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.32 E-value=5.7e-06 Score=61.22 Aligned_cols=68 Identities=18% Similarity=0.226 Sum_probs=53.3
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeC----CEEEechhHHH
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIR----GKHVGNADVLK 205 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~----G~~IGG~del~ 205 (277)
+|.||+... |++|++|+.+|+.+||+|++++++. ..+.++ +..+. .++|+++++ |..|.....+.
T Consensus 1 ~i~Ly~~~~------~p~c~kv~~~L~~~gi~y~~~~~~~--~~~~~~-~~~~~--~~vP~l~~~~~~~~~~l~eS~~I~ 69 (77)
T cd03040 1 KITLYQYKT------CPFCCKVRAFLDYHGIPYEVVEVNP--VSRKEI-KWSSY--KKVPILRVESGGDGQQLVDSSVII 69 (77)
T ss_pred CEEEEEcCC------CHHHHHHHHHHHHCCCceEEEECCc--hhHHHH-HHhCC--CccCEEEECCCCCccEEEcHHHHH
Confidence 588999975 5899999999999999999999854 334555 34444 789999987 77888877777
Q ss_pred HHH
Q 048504 206 SMY 208 (277)
Q Consensus 206 ~L~ 208 (277)
+..
T Consensus 70 ~yL 72 (77)
T cd03040 70 STL 72 (77)
T ss_pred HHH
Confidence 643
No 37
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.30 E-value=2.5e-06 Score=59.03 Aligned_cols=68 Identities=10% Similarity=0.014 Sum_probs=54.3
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHH
Q 048504 132 VVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSM 207 (277)
Q Consensus 132 VLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L 207 (277)
.||+... |++|.+++.+|+.++|+|+.++++.+.....++++..+. .++|.|+++|..+++...+.+.
T Consensus 2 ~ly~~~~------~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~P~l~~~~~~~~es~~I~~y 69 (71)
T cd00570 2 KLYYFPG------SPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPL--GKVPVLEDGGLVLTESLAILEY 69 (71)
T ss_pred EEEeCCC------CccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCC--CCCCEEEECCEEEEcHHHHHHH
Confidence 5777765 579999999999999999988887654333356776655 7999999999999998876653
No 38
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.26 E-value=5.9e-06 Score=60.35 Aligned_cols=67 Identities=15% Similarity=0.149 Sum_probs=52.5
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeC-CEEEechhHHHHHH
Q 048504 132 VVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIR-GKHVGNADVLKSMY 208 (277)
Q Consensus 132 VLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~-G~~IGG~del~~L~ 208 (277)
.||+..+ |++|.+||.+|..+||+|+++++..+... .. .+..+. .++|+|+++ |..+++...+.+..
T Consensus 2 ~Ly~~~~------~p~~~rvr~~L~~~gl~~~~~~~~~~~~~-~~-~~~~~~--~~vP~L~~~~~~~l~es~aI~~yL 69 (71)
T cd03037 2 KLYIYEH------CPFCVKARMIAGLKNIPVEQIILQNDDEA-TP-IRMIGA--KQVPILEKDDGSFMAESLDIVAFI 69 (71)
T ss_pred ceEecCC------CcHhHHHHHHHHHcCCCeEEEECCCCchH-HH-HHhcCC--CccCEEEeCCCeEeehHHHHHHHH
Confidence 5788775 58999999999999999999988765322 22 344544 689999997 89999998887654
No 39
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.05 E-value=2.8e-05 Score=59.91 Aligned_cols=73 Identities=11% Similarity=0.066 Sum_probs=57.4
Q ss_pred CCCCcEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeC-CEEEechhHH
Q 048504 126 GTEDRIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIR-GKHVGNADVL 204 (277)
Q Consensus 126 ~~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~-G~~IGG~del 204 (277)
...+.++||+... |++|.+++.+|+.+||+|+.++++... ..+++.+..+. .++|.+.++ |..|.....+
T Consensus 14 ~~~~~~~Ly~~~~------sp~~~kv~~~L~~~gl~~~~~~v~~~~-~~~~~~~~np~--~~vPvL~~~~g~~l~eS~aI 84 (89)
T cd03055 14 PVPGIIRLYSMRF------CPYAQRARLVLAAKNIPHEVININLKD-KPDWFLEKNPQ--GKVPALEIDEGKVVYESLII 84 (89)
T ss_pred CCCCcEEEEeCCC------CchHHHHHHHHHHcCCCCeEEEeCCCC-CcHHHHhhCCC--CCcCEEEECCCCEEECHHHH
Confidence 3456799999875 589999999999999999998887542 23456676654 689999998 8888887776
Q ss_pred HHH
Q 048504 205 KSM 207 (277)
Q Consensus 205 ~~L 207 (277)
.+.
T Consensus 85 ~~y 87 (89)
T cd03055 85 CEY 87 (89)
T ss_pred HHh
Confidence 654
No 40
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=97.98 E-value=4.2e-05 Score=55.49 Aligned_cols=69 Identities=17% Similarity=0.102 Sum_probs=53.0
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHHH
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSMY 208 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L~ 208 (277)
++||+... |++|.+++.+|+.+||+|++++++.+ ....++++.... .++|.+..+|..+.....+.+..
T Consensus 1 ~~ly~~~~------~~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~--~~vP~l~~~~~~l~es~aI~~yL 69 (73)
T cd03059 1 MTLYSGPD------DVYSHRVRIVLAEKGVSVEIIDVDPD-NPPEDLAELNPY--GTVPTLVDRDLVLYESRIIMEYL 69 (73)
T ss_pred CEEEECCC------ChhHHHHHHHHHHcCCccEEEEcCCC-CCCHHHHhhCCC--CCCCEEEECCEEEEcHHHHHHHH
Confidence 46888875 58999999999999999999888754 223566666544 68999988888777776666543
No 41
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.92 E-value=1.4e-05 Score=64.61 Aligned_cols=47 Identities=15% Similarity=0.143 Sum_probs=41.7
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCC
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGG 183 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~ 183 (277)
|+||+.+. |++|++|+++|+++||+|+++|+..++..+++|.++++.
T Consensus 1 i~iY~~~~------C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~ 47 (111)
T cd03036 1 LKFYEYPK------CSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEK 47 (111)
T ss_pred CEEEECCC------CHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHH
Confidence 57999986 589999999999999999999999998888888887653
No 42
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.83 E-value=2.2e-05 Score=62.27 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=41.8
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCC
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGG 183 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~ 183 (277)
|+||+++. |++|++|+.+|+++||+|+++|+..++...++|+++++.
T Consensus 1 i~iY~~~~------C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~ 47 (105)
T cd02977 1 ITIYGNPN------CSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAK 47 (105)
T ss_pred CEEEECCC------CHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHh
Confidence 57999986 589999999999999999999999888888888888764
No 43
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=97.83 E-value=6.3e-05 Score=54.12 Aligned_cols=67 Identities=13% Similarity=0.092 Sum_probs=50.0
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCC--HHHHHHHHHHhCCCCCCCcEEEe-CCEEEechhHHHH
Q 048504 132 VVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMD--SAYKKELQCVFGGKNVTLPQVFI-RGKHVGNADVLKS 206 (277)
Q Consensus 132 VLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d--~~~reELke~lG~~~~tvPqVFI-~G~~IGG~del~~ 206 (277)
.||+... |++|.+++.+|..++|+|++++++.. .....++.+..+. .++|.+.+ +|..+.....+.+
T Consensus 2 ~Ly~~~~------s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~--~~vP~l~~~~~~~l~es~aI~~ 71 (74)
T cd03051 2 KLYDSPT------APNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPA--GTVPVLELDDGTVITESVAICR 71 (74)
T ss_pred EEEeCCC------CcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCC--CCCCEEEeCCCCEEecHHHHHH
Confidence 6888875 47999999999999999988877642 2234567777655 68999987 6666666555544
No 44
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=97.81 E-value=9.8e-05 Score=54.07 Aligned_cols=66 Identities=15% Similarity=0.152 Sum_probs=51.5
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeC-CEEEechhHHHH
Q 048504 132 VVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIR-GKHVGNADVLKS 206 (277)
Q Consensus 132 VLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~-G~~IGG~del~~ 206 (277)
+||+..+| ++|.+++.+|..+|++|+.++++... ..+++.++.+. .++|.+..+ |..|.....+.+
T Consensus 2 ~ly~~~~~------p~~~rv~~~L~~~gl~~e~~~v~~~~-~~~~~~~~np~--~~vP~L~~~~g~~l~eS~aI~~ 68 (71)
T cd03060 2 ILYSFRRC------PYAMRARMALLLAGITVELREVELKN-KPAEMLAASPK--GTVPVLVLGNGTVIEESLDIMR 68 (71)
T ss_pred EEEecCCC------cHHHHHHHHHHHcCCCcEEEEeCCCC-CCHHHHHHCCC--CCCCEEEECCCcEEecHHHHHH
Confidence 68888765 79999999999999999988887642 23567777655 799999986 888776665543
No 45
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=97.80 E-value=0.0001 Score=54.75 Aligned_cols=68 Identities=12% Similarity=0.062 Sum_probs=56.2
Q ss_pred EEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHHHh
Q 048504 133 VYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSMYE 209 (277)
Q Consensus 133 LYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L~E 209 (277)
||.... |++|++|+.+|+.+||+|+.+++..... ..++.++.+. .++|.+..||..|.+...+.+..+
T Consensus 1 Ly~~~~------Sp~~~kv~~~l~~~~i~~~~~~v~~~~~-~~~~~~~~p~--~~vPvL~~~g~~l~dS~~I~~yL~ 68 (75)
T PF13417_consen 1 LYGFPG------SPYSQKVRLALEEKGIPYELVPVDPEEK-RPEFLKLNPK--GKVPVLVDDGEVLTDSAAIIEYLE 68 (75)
T ss_dssp EEEETT------SHHHHHHHHHHHHHTEEEEEEEEBTTST-SHHHHHHSTT--SBSSEEEETTEEEESHHHHHHHHH
T ss_pred CCCcCC------ChHHHHHHHHHHHcCCeEEEeccCcccc-hhHHHhhccc--ccceEEEECCEEEeCHHHHHHHHH
Confidence 567765 5899999999999999999999876533 6777777765 799999999999999988877543
No 46
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.79 E-value=0.00018 Score=52.94 Aligned_cols=55 Identities=18% Similarity=0.326 Sum_probs=42.7
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHh----CC--CeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCE
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRG----FR--VWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGK 196 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~----~g--V~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~ 196 (277)
+|+||+.++| ++|..++.+|+. ++ +.+..+|+..+++ +.+..|- ..+|+++++|+
T Consensus 2 ~v~~f~~~~C------~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~----~~~~~~v--~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTC------PYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQ----KAMEYGI--MAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCC------cchHHHHHHHHHHHHHhcCceEEEEEeCccCHH----HHHHcCC--ccCCEEEECCE
Confidence 5889999876 799999999864 33 6778899887653 3444654 78999999997
No 47
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.72 E-value=7.6e-05 Score=62.40 Aligned_cols=45 Identities=9% Similarity=0.248 Sum_probs=40.6
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHh
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVF 181 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~l 181 (277)
|+||+++. |++|++|+.+|+.+||+|+++|+..++..+++|.+++
T Consensus 2 i~iY~~~~------C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l 46 (131)
T PRK01655 2 VTLFTSPS------CTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQIL 46 (131)
T ss_pred EEEEeCCC------ChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHH
Confidence 78999986 5899999999999999999999999988888887765
No 48
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=97.71 E-value=0.00017 Score=52.48 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=52.2
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCC--CHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHH
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSM--DSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKS 206 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~--d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~ 206 (277)
+.||+...| ++|++++.+|+.+|++|++++++. .....+++.+.... .++|.+.++|..|-....+.+
T Consensus 1 ~~Ly~~~~~------~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~--~~vP~l~~~~~~l~es~aI~~ 70 (74)
T cd03045 1 IDLYYLPGS------PPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQ--HTVPTLVDNGFVLWESHAILI 70 (74)
T ss_pred CEEEeCCCC------CcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcC--CCCCEEEECCEEEEcHHHHHH
Confidence 368888764 799999999999999999888764 33345777777654 689999888877766665554
No 49
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.66 E-value=0.00052 Score=52.38 Aligned_cols=53 Identities=21% Similarity=0.349 Sum_probs=43.1
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCC
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGF----RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRG 195 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~----gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G 195 (277)
+|++|++.. |.-|..|+.+|+.. ++.++++||..|++ |.++.|. .+|+|.++|
T Consensus 1 ~l~l~~k~~------C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~----l~~~Y~~---~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPG------CHLCDEAKEILEEVAAEFPFELEEVDIDEDPE----LFEKYGY---RIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SS------SHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH----HHHHSCT---STSEEEETT
T ss_pred CEEEEcCCC------CChHHHHHHHHHHHHhhcCceEEEEECCCCHH----HHHHhcC---CCCEEEEcC
Confidence 589999985 58999999999964 47799999998865 6667764 799999999
No 50
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.65 E-value=0.00028 Score=50.88 Aligned_cols=67 Identities=15% Similarity=0.262 Sum_probs=52.0
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCC--HHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHH
Q 048504 132 VVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMD--SAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKS 206 (277)
Q Consensus 132 VLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d--~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~ 206 (277)
+||+... |++|.+++.+|+.+|++|++++++.. ....+++.+.... .++|.+..+|..|.....+.+
T Consensus 2 ~Ly~~~~------~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~--~~vP~l~~~~~~i~es~aI~~ 70 (73)
T cd03056 2 KLYGFPL------SGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPN--GEVPVLELDGRVLAESNAILV 70 (73)
T ss_pred EEEeCCC------CccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCC--CCCCEEEECCEEEEcHHHHHH
Confidence 6788875 47999999999999999999888743 2344666666544 689999999988877666654
No 51
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=97.51 E-value=0.00072 Score=49.45 Aligned_cols=61 Identities=13% Similarity=0.123 Sum_probs=49.1
Q ss_pred CCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHHHh
Q 048504 139 RGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSMYE 209 (277)
Q Consensus 139 cgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L~E 209 (277)
.++.-.+++|.+++.+|+.+||+|+.+++.... ... ...+|.+.++|+.+.+...+.+..+
T Consensus 10 ~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~--------~~p--~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 10 FGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW--------RSP--TGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc--------cCC--CcccCEEEECCEEEcCHHHHHHHHh
Confidence 345567899999999999999999999987642 222 2689999999999999888776543
No 52
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=97.51 E-value=0.00023 Score=57.88 Aligned_cols=46 Identities=20% Similarity=0.222 Sum_probs=40.8
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhC
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFG 182 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG 182 (277)
|.||+.+. |++|++|+++|+.+||+|+++|+..++..+++|.+++.
T Consensus 1 i~iY~~~~------C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~ 46 (117)
T TIGR01617 1 IKVYGSPN------CTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILS 46 (117)
T ss_pred CEEEeCCC------CHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHH
Confidence 57899875 58999999999999999999999999888888887764
No 53
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.46 E-value=0.00031 Score=57.00 Aligned_cols=46 Identities=17% Similarity=0.333 Sum_probs=40.6
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhC
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFG 182 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG 182 (277)
|.||+.+. |+.|++|+++|+.+||+|+++|+..++.-+++|++.+.
T Consensus 2 i~iY~~~~------C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~ 47 (115)
T cd03032 2 IKLYTSPS------CSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILS 47 (115)
T ss_pred EEEEeCCC------CHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHH
Confidence 78999985 58999999999999999999999988777788877764
No 54
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.40 E-value=0.00029 Score=59.14 Aligned_cols=45 Identities=16% Similarity=0.338 Sum_probs=39.0
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHh
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVF 181 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~l 181 (277)
|+||+.+. |+.|++|+++|+.+||+|+++|+..++--.++|.+++
T Consensus 2 i~iY~~~~------C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l 46 (132)
T PRK13344 2 IKIYTISS------CTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAIL 46 (132)
T ss_pred EEEEeCCC------CHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHH
Confidence 78999986 5799999999999999999999998877667776664
No 55
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.38 E-value=0.00033 Score=58.78 Aligned_cols=45 Identities=18% Similarity=0.346 Sum_probs=39.8
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHh
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVF 181 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~l 181 (277)
|+||+.+. |+.|++|+++|+.+||+|+++|+..++--.++|.+++
T Consensus 2 i~iY~~~~------C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l 46 (131)
T PRK12559 2 VVLYTTAS------CASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSIL 46 (131)
T ss_pred EEEEeCCC------ChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHH
Confidence 78999986 5799999999999999999999998877777777765
No 56
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=97.34 E-value=0.0003 Score=56.82 Aligned_cols=46 Identities=15% Similarity=0.039 Sum_probs=40.4
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhC
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFG 182 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG 182 (277)
|+||+.+.| ..|++|+++|+.+||+|+++|+..++--.+||.+++.
T Consensus 1 i~iy~~~~C------~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~ 46 (105)
T cd03035 1 ITLYGIKNC------DTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLA 46 (105)
T ss_pred CEEEeCCCC------HHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHH
Confidence 579999865 7999999999999999999999998877778877764
No 57
>PHA02125 thioredoxin-like protein
Probab=97.26 E-value=0.0012 Score=49.27 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=39.6
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEE
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHV 198 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~I 198 (277)
|++|+++|| +.|+.++.+|+...+.|..+|.+.+ .++.+..+- ..+|.+. +|+.+
T Consensus 2 iv~f~a~wC------~~Ck~~~~~l~~~~~~~~~vd~~~~----~~l~~~~~v--~~~PT~~-~g~~~ 56 (75)
T PHA02125 2 IYLFGAEWC------ANCKMVKPMLANVEYTYVDVDTDEG----VELTAKHHI--RSLPTLV-NTSTL 56 (75)
T ss_pred EEEEECCCC------HhHHHHHHHHHHHhheEEeeeCCCC----HHHHHHcCC--ceeCeEE-CCEEE
Confidence 789999986 6999999999876555555555443 356666764 7899976 66543
No 58
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=97.23 E-value=0.0022 Score=46.92 Aligned_cols=70 Identities=9% Similarity=-0.053 Sum_probs=53.4
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCH--HHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHHH
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDS--AYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSMY 208 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~--~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L~ 208 (277)
+.+|+... +++|.+++.+|..+|++|+.+.++... ...+++++.... ..+|.+..+|..|.....+.+..
T Consensus 2 ~~Ly~~~~------s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~--~~vP~l~~~g~~l~es~aI~~yL 73 (76)
T cd03053 2 LKLYGAAM------STCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPF--GQIPALEDGDLKLFESRAITRYL 73 (76)
T ss_pred eEEEeCCC------ChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCC--CCCCEEEECCEEEEcHHHHHHHH
Confidence 57888765 479999999999999999988776532 223566666654 78999998888887777766644
No 59
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.21 E-value=0.00093 Score=52.26 Aligned_cols=63 Identities=14% Similarity=0.179 Sum_probs=47.5
Q ss_pred CCCCCcEEEEEecCCCCCCCChhHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEe
Q 048504 125 PGTEDRIVVYLTSLRGIRRTFEDCYAVRMIFRGF-----RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVG 199 (277)
Q Consensus 125 ~~~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~-----gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IG 199 (277)
....-.|.+|++++| ++|..++.+++.. +|.|..+|++.++ ++.+..|- ..+|.++|||+.++
T Consensus 10 l~~pv~i~~F~~~~C------~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~----e~a~~~~V--~~vPt~vidG~~~~ 77 (89)
T cd03026 10 LNGPINFETYVSLSC------HNCPDVVQALNLMAVLNPNIEHEMIDGALFQ----DEVEERGI--MSVPAIFLNGELFG 77 (89)
T ss_pred cCCCEEEEEEECCCC------CCcHHHHHHHHHHHHHCCCceEEEEEhHhCH----HHHHHcCC--ccCCEEEECCEEEE
Confidence 334446999999875 6888888887754 6899999998664 34455654 78999999998765
No 60
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=97.16 E-value=0.0039 Score=49.60 Aligned_cols=76 Identities=14% Similarity=0.205 Sum_probs=54.8
Q ss_pred EEEEEecCCC--CCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHHH
Q 048504 131 IVVYLTSLRG--IRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSMY 208 (277)
Q Consensus 131 VVLYttSlcg--iR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L~ 208 (277)
+-+|.+...+ -...|++|++++.+|..+||+|+.++|++... -+.+.++.-. ..+|.+..+|..|.....+.+..
T Consensus 6 ~el~vka~~~~~~~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~-p~~~~~~nP~--g~vPvL~~~~~~i~eS~~I~eYL 82 (91)
T cd03061 6 IELFVKASSDGESIGNCPFCQRLFMVLWLKGVVFNVTTVDMKRK-PEDLKDLAPG--TQPPFLLYNGEVKTDNNKIEEFL 82 (91)
T ss_pred EEEEEEeccCCCCCCCChhHHHHHHHHHHCCCceEEEEeCCCCC-CHHHHHhCCC--CCCCEEEECCEEecCHHHHHHHH
Confidence 4455443322 14679999999999999999999888875421 2456676643 67999999999888877777654
Q ss_pred h
Q 048504 209 E 209 (277)
Q Consensus 209 E 209 (277)
+
T Consensus 83 d 83 (91)
T cd03061 83 E 83 (91)
T ss_pred H
Confidence 3
No 61
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.15 E-value=0.00073 Score=55.41 Aligned_cols=47 Identities=17% Similarity=0.204 Sum_probs=40.6
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhC
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFG 182 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG 182 (277)
.|+||+.+. |..|++|+++|+++||+|+++|+..++--.++|++++.
T Consensus 1 ~i~iy~~p~------C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~ 47 (113)
T cd03033 1 DIIFYEKPG------CANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFG 47 (113)
T ss_pred CEEEEECCC------CHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHH
Confidence 378999986 57999999999999999999999988777777777764
No 62
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=97.11 E-value=0.0031 Score=46.23 Aligned_cols=69 Identities=10% Similarity=0.007 Sum_probs=49.3
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHH
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSM 207 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L 207 (277)
+.||+... +++|.+++.+|+.+|++|++++++.. ....++++.... ..++|.+..+|..+.+...+.+.
T Consensus 1 ~~Ly~~~~------sp~~~~v~~~l~~~gl~~~~~~~~~~-~~~~~~~~~~p~-~~~vP~l~~~~~~l~eS~aI~~y 69 (74)
T cd03058 1 VKLLGAWA------SPFVLRVRIALALKGVPYEYVEEDLG-NKSELLLASNPV-HKKIPVLLHNGKPICESLIIVEY 69 (74)
T ss_pred CEEEECCC------CchHHHHHHHHHHcCCCCEEEEeCcc-cCCHHHHHhCCC-CCCCCEEEECCEEeehHHHHHHH
Confidence 35787764 58999999999999999999887653 122345555421 15799998888777776666554
No 63
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=97.08 E-value=0.0023 Score=46.12 Aligned_cols=68 Identities=12% Similarity=0.086 Sum_probs=50.1
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCH--HHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHH
Q 048504 132 VVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDS--AYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSM 207 (277)
Q Consensus 132 VLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~--~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L 207 (277)
+||+... ++.|.+++.+|+.+||+|+.+.++... ....++++.... ..+|.+..+|..+.....+.+.
T Consensus 2 ~L~~~~~------~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~--~~vP~l~~~~~~l~es~aI~~y 71 (73)
T cd03042 2 ILYSYFR------SSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQ--GLVPTLVIDGLVLTQSLAIIEY 71 (73)
T ss_pred EEecCCC------CcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCC--CCCCEEEECCEEEEcHHHHHHH
Confidence 4676654 368899999999999999988776532 233566666644 7899999998888776665543
No 64
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=97.08 E-value=0.0024 Score=47.63 Aligned_cols=69 Identities=13% Similarity=0.105 Sum_probs=52.3
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCH--HHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHH
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDS--AYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSM 207 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~--~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L 207 (277)
+++|.... ++.|++|+.+|+.+|++|+.+.++... ....++.++... .++|.+..||..|.....+.+.
T Consensus 1 ~~ly~~~~------s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~--g~vP~L~~~g~~l~Es~aI~~y 71 (73)
T cd03052 1 LVLYHWTQ------SFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPT--GEVPVLIHGDNIICDPTQIIDY 71 (73)
T ss_pred CEEecCCC------CccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcC--CCCCEEEECCEEEEcHHHHHHH
Confidence 46788764 479999999999999999888776432 233567777765 6899999899887777666543
No 65
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=97.04 E-value=0.0043 Score=45.83 Aligned_cols=68 Identities=12% Similarity=0.112 Sum_probs=51.7
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHH
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSM 207 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L 207 (277)
++||....+ +.|.+++.+|...|++|+.+.++.+ ...++++..... .++|.+..+|..|.+...+.+.
T Consensus 2 ~~Ly~~~~~------~~~~~v~~~L~~~~i~~e~~~v~~~-~~~~~~~~~~p~--~~vP~l~~~~~~l~es~aI~~y 69 (73)
T cd03076 2 YTLTYFPVR------GRAEAIRLLLADQGISWEEERVTYE-EWQESLKPKMLF--GQLPCFKDGDLTLVQSNAILRH 69 (73)
T ss_pred cEEEEeCCc------chHHHHHHHHHHcCCCCEEEEecHH-HhhhhhhccCCC--CCCCEEEECCEEEEcHHHHHHH
Confidence 567877654 5999999999999999999888752 344455555433 6899999999888877776654
No 66
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=97.01 E-value=0.0023 Score=61.11 Aligned_cols=83 Identities=19% Similarity=0.397 Sum_probs=64.1
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHHH-
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSMY- 208 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L~- 208 (277)
+++||.-- |||+|.+||++|+=+||+|..++|+ +-.+++++=- ....||.+.|+|+.+-+..-+..+.
T Consensus 90 ~l~LyQye------tCPFCcKVrAFLDyhgisY~VVEVn--pV~r~eIk~S---sykKVPil~~~Geqm~dSsvIIs~la 158 (370)
T KOG3029|consen 90 DLVLYQYE------TCPFCCKVRAFLDYHGISYAVVEVN--PVLRQEIKWS---SYKKVPILLIRGEQMVDSSVIISLLA 158 (370)
T ss_pred eEEEEeec------cCchHHHHHHHHhhcCCceEEEEec--chhhhhcccc---ccccccEEEeccceechhHHHHHHHH
Confidence 79999874 7899999999999999999999886 4556665432 2378999999999887777776654
Q ss_pred ----hh-ccHHHHhcCCCCC
Q 048504 209 ----ET-GELARVLDGFPRR 223 (277)
Q Consensus 209 ----Es-GeL~klL~~~~~~ 223 (277)
.. -.|.++++-.|..
T Consensus 159 TyLq~~~q~l~eiiq~yPa~ 178 (370)
T KOG3029|consen 159 TYLQDKRQDLGEIIQMYPAT 178 (370)
T ss_pred HHhccCCCCHHHHHHhcccc
Confidence 22 3677788777753
No 67
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=96.89 E-value=0.005 Score=44.88 Aligned_cols=68 Identities=13% Similarity=0.186 Sum_probs=48.7
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHH
Q 048504 132 VVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSM 207 (277)
Q Consensus 132 VLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L 207 (277)
+||.-..+ +.|.+++.+|+.+||+|+.++++.......++..... ..++|.+..+|..|.....+.+.
T Consensus 2 ~Ly~~~~~------~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p--~~~vP~L~~~~~~l~es~aI~~y 69 (72)
T cd03039 2 KLTYFNIR------GRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLP--FGQLPVLEIDGKKLTQSNAILRY 69 (72)
T ss_pred EEEEEcCc------chHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCc--CCCCCEEEECCEEEEecHHHHHH
Confidence 57766554 6999999999999999999988653222223444433 37899999998888776666543
No 68
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.79 E-value=0.0054 Score=46.14 Aligned_cols=54 Identities=19% Similarity=0.232 Sum_probs=39.6
Q ss_pred EEEEEecCCCCCCCChhHHHH----HHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEE
Q 048504 131 IVVYLTSLRGIRRTFEDCYAV----RMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHV 198 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~V----k~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~I 198 (277)
|.+|+ +|| +.|+.+ +++++++++.++.++|+. . +++.+ .|- .++|.|+|||+.+
T Consensus 3 i~~~a-~~C------~~C~~~~~~~~~~~~e~~~~~~~~~v~~-~---~~a~~-~~v--~~vPti~i~G~~~ 60 (76)
T TIGR00412 3 IQIYG-TGC------ANCQMTEKNVKKAVEELGIDAEFEKVTD-M---NEILE-AGV--TATPGVAVDGELV 60 (76)
T ss_pred EEEEC-CCC------cCHHHHHHHHHHHHHHcCCCeEEEEeCC-H---HHHHH-cCC--CcCCEEEECCEEE
Confidence 56666 775 799998 667778899999888883 2 22332 444 7999999999755
No 69
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.77 E-value=0.0058 Score=44.53 Aligned_cols=67 Identities=13% Similarity=0.025 Sum_probs=48.5
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHh--CCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEe-CCEEEechhHHHHH
Q 048504 132 VVYLTSLRGIRRTFEDCYAVRMIFRG--FRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFI-RGKHVGNADVLKSM 207 (277)
Q Consensus 132 VLYttSlcgiR~Tc~~C~~Vk~iL~~--~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI-~G~~IGG~del~~L 207 (277)
.||+... +++|.+++.+|+. +|++|+.+.++.. ....++.+.... .++|.+.. ||..|.....+.+.
T Consensus 2 ~Ly~~~~------s~~~~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~--~~vP~l~~~~g~~l~es~aI~~y 71 (73)
T cd03049 2 KLLYSPT------SPYVRKVRVAAHETGLGDDVELVLVNPW-SDDESLLAVNPL--GKIPALVLDDGEALFDSRVICEY 71 (73)
T ss_pred EEecCCC------CcHHHHHHHHHHHhCCCCCcEEEEcCcc-cCChHHHHhCCC--CCCCEEEECCCCEEECHHHHHhh
Confidence 5777765 4799999999999 8999999888642 223455566544 78999975 77777776665543
No 70
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=96.75 E-value=0.0086 Score=44.58 Aligned_cols=68 Identities=13% Similarity=0.170 Sum_probs=50.3
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCC--CHHHHHHHHHHhCCCCCCCcEEEeC---CEEEechhHHH
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSM--DSAYKKELQCVFGGKNVTLPQVFIR---GKHVGNADVLK 205 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~--d~~~reELke~lG~~~~tvPqVFI~---G~~IGG~del~ 205 (277)
+.||... . ++|.+++.+|+.+||+|+.+.+.. .....+++.++... .++|.+..+ |..|.....+.
T Consensus 2 ~~Ly~~~------~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~--~~vP~l~~~~~~g~~l~eS~aI~ 72 (81)
T cd03048 2 ITLYTHG------T-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPN--GRIPAIVDHNGTPLTVFESGAIL 72 (81)
T ss_pred eEEEeCC------C-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcC--CCCCEEEeCCCCceEEEcHHHHH
Confidence 5788765 2 799999999999999998776663 22344667776644 689999887 77777766665
Q ss_pred HH
Q 048504 206 SM 207 (277)
Q Consensus 206 ~L 207 (277)
+.
T Consensus 73 ~y 74 (81)
T cd03048 73 LY 74 (81)
T ss_pred HH
Confidence 54
No 71
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=96.71 E-value=0.013 Score=43.35 Aligned_cols=68 Identities=13% Similarity=0.197 Sum_probs=51.0
Q ss_pred EEEEEecCC-CCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHHH
Q 048504 131 IVVYLTSLR-GIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSMY 208 (277)
Q Consensus 131 VVLYttSlc-giR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L~ 208 (277)
++||.-..+ +++.-+++|.+|+.+|+..|++|+.++++.- +... ..++|.+..+|+.|.+...+.+..
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~--------~~~p--~g~vPvl~~~g~~l~eS~~I~~yL 70 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA--------KRSP--KGKLPFIELNGEKIADSELIIDHL 70 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc--------cCCC--CCCCCEEEECCEEEcCHHHHHHHH
Confidence 466766533 3344579999999999999999998887641 2332 268999999999998888777643
No 72
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.67 E-value=0.002 Score=53.32 Aligned_cols=51 Identities=27% Similarity=0.617 Sum_probs=40.7
Q ss_pred CCCCCCCCCccceEeCCCCCCcceeeeCCCC---cceeCCCCCcCceeeCCCCC
Q 048504 225 PGFVCGSCGDVRFVPCGNCSGSRKVFDEADG---VPKRCLECNENGLIRCPDCC 275 (277)
Q Consensus 225 ~~~~C~~CGg~rfVpC~~C~GS~Kv~~~~~~---~~~rC~~CNEnGLvrCp~C~ 275 (277)
....|..|.|.+..+|+.|+|+-.+.....+ ...+|+.|+-.|.+.|+.|.
T Consensus 40 ~~v~C~~C~GsG~~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~~C~~C~ 93 (111)
T PLN03165 40 NTQPCFPCSGTGAQVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSLTCTTCQ 93 (111)
T ss_pred cCCCCCCCCCCCCcCCCCCcCcCeEEEEeCCcEEEEEECCCCCCcceeeCCCCC
Confidence 4468999998888899999999766432211 26799999999999999995
No 73
>PRK10387 glutaredoxin 2; Provisional
Probab=96.66 E-value=0.0088 Score=51.54 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=51.3
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE-EeCCEEEechhHHHHHHh
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQV-FIRGKHVGNADVLKSMYE 209 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqV-FI~G~~IGG~del~~L~E 209 (277)
+.||+... +|+|.+|+.+|+.+||+|+.+++..+.. ... .+..+. .++|.| ..+|..|.+...+.+..+
T Consensus 1 ~~Ly~~~~------sp~~~kv~~~L~~~gi~y~~~~~~~~~~-~~~-~~~~p~--~~VPvL~~~~g~~l~eS~aI~~yL~ 70 (210)
T PRK10387 1 MKLYIYDH------CPFCVKARMIFGLKNIPVELIVLANDDE-ATP-IRMIGQ--KQVPILQKDDGSYMPESLDIVHYID 70 (210)
T ss_pred CEEEeCCC------CchHHHHHHHHHHcCCCeEEEEcCCCch-hhH-HHhcCC--cccceEEecCCeEecCHHHHHHHHH
Confidence 46888765 5899999999999999999998865432 222 334443 689999 568888888888777544
No 74
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=96.63 E-value=0.0061 Score=45.89 Aligned_cols=65 Identities=15% Similarity=0.172 Sum_probs=47.4
Q ss_pred CCCCChhHHHHHHHHHhCCCeEEEEECCCCH--HHHHHHHHHhCCCCCCCcEEEeC-CEEEechhHHHHHH
Q 048504 141 IRRTFEDCYAVRMIFRGFRVWVDERDVSMDS--AYKKELQCVFGGKNVTLPQVFIR-GKHVGNADVLKSMY 208 (277)
Q Consensus 141 iR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~--~~reELke~lG~~~~tvPqVFI~-G~~IGG~del~~L~ 208 (277)
.+..+++|.+++.+|..+||+|+.+.++... ....++ ...+. ..+|.+..+ |..|.+...+.+..
T Consensus 12 ~~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~--~~vP~L~~~~~~~l~eS~aI~~yL 79 (84)
T cd03038 12 VRAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGF--YTVPVIVDGSGEVIGDSFAIAEYL 79 (84)
T ss_pred CCCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCC--ceeCeEEECCCCEEeCHHHHHHHH
Confidence 4567899999999999999999988776431 222333 33333 689999888 88888887777654
No 75
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.59 E-value=0.023 Score=42.62 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=34.2
Q ss_pred CChhHHHHHHH----HHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEE
Q 048504 144 TFEDCYAVRMI----FRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKH 197 (277)
Q Consensus 144 Tc~~C~~Vk~i----L~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~ 197 (277)
+|++|..+.++ +..+++.++.+|+. + .+++ ...|- .++|.++|||+.
T Consensus 9 ~C~~C~~~~~~~~~~~~~~~i~~ei~~~~-~---~~~~-~~ygv--~~vPalvIng~~ 59 (76)
T PF13192_consen 9 GCPYCPELVQLLKEAAEELGIEVEIIDIE-D---FEEI-EKYGV--MSVPALVINGKV 59 (76)
T ss_dssp SCTTHHHHHHHHHHHHHHTTEEEEEEETT-T---HHHH-HHTT---SSSSEEEETTEE
T ss_pred CCCCcHHHHHHHHHHHHhcCCeEEEEEcc-C---HHHH-HHcCC--CCCCEEEECCEE
Confidence 46899966664 45689999999983 3 2344 55554 899999999984
No 76
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=96.58 E-value=0.0034 Score=52.01 Aligned_cols=46 Identities=13% Similarity=0.114 Sum_probs=39.7
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHh
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVF 181 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~l 181 (277)
.|+||..+-| .-|++|+++|+++||+|.++|+..++--+++|.+++
T Consensus 2 ~itiy~~p~C------~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l 47 (117)
T COG1393 2 MITIYGNPNC------STCRKALAWLEEHGIEYTFIDYLKTPPSREELKKIL 47 (117)
T ss_pred eEEEEeCCCC------hHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHH
Confidence 3899999876 599999999999999999999998776677777665
No 77
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=96.54 E-value=0.0094 Score=52.45 Aligned_cols=67 Identities=16% Similarity=0.248 Sum_probs=50.4
Q ss_pred EEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEE-eCCEEEechhHHHHHHh
Q 048504 133 VYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVF-IRGKHVGNADVLKSMYE 209 (277)
Q Consensus 133 LYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVF-I~G~~IGG~del~~L~E 209 (277)
||+... ||+|.+|+.+|..+|++|+.+++..+.. .. ..+..+. .++|++. .||..|.+...+.+..+
T Consensus 2 Ly~~~~------sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~-~~~~np~--g~vP~l~~~~g~~l~es~~I~~yL~ 69 (209)
T TIGR02182 2 LYIYDH------CPFCVRARMIFGLKNIPVEKHVLLNDDE-ET-PIRMIGA--KQVPILQKDDGRAMPESLDIVAYFD 69 (209)
T ss_pred eecCCC------CChHHHHHHHHHHcCCCeEEEECCCCcc-hh-HHHhcCC--CCcceEEeeCCeEeccHHHHHHHHH
Confidence 566654 5899999999999999999998865432 12 2344433 6899997 78899999888877544
No 78
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=96.53 E-value=0.013 Score=47.29 Aligned_cols=55 Identities=15% Similarity=0.259 Sum_probs=41.1
Q ss_pred CCCcEEEEE-ecCCCCCCCChhHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEe
Q 048504 127 TEDRIVVYL-TSLRGIRRTFEDCYAVRMIFRGF-----RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFI 193 (277)
Q Consensus 127 ~~~kVVLYt-tSlcgiR~Tc~~C~~Vk~iL~~~-----gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI 193 (277)
....|+||+ ++|| ++|+.++.+|+.. .|.|..+|++.++ ++.+.++- .++|.++|
T Consensus 21 ~~~~vvv~f~a~wC------~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~----~l~~~~~v--~~vPt~~i 81 (113)
T cd02975 21 NPVDLVVFSSKEGC------QYCEVTKQLLEELSELSDKLKLEIYDFDEDK----EKAEKYGV--ERVPTTIF 81 (113)
T ss_pred CCeEEEEEeCCCCC------CChHHHHHHHHHHHHhcCceEEEEEeCCcCH----HHHHHcCC--CcCCEEEE
Confidence 344577775 5665 7999999999864 3678899998765 56666765 78999988
No 79
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=96.27 E-value=0.0076 Score=48.87 Aligned_cols=45 Identities=9% Similarity=0.068 Sum_probs=37.2
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHh
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVF 181 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~l 181 (277)
|+||+.+. |.-|++|+.+|++++++|+++|+..++--.++|.+++
T Consensus 1 i~iy~~~~------C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l 45 (112)
T cd03034 1 ITIYHNPR------CSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELL 45 (112)
T ss_pred CEEEECCC------CHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHH
Confidence 57899985 5799999999999999999999987765556665554
No 80
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=96.27 E-value=0.028 Score=41.32 Aligned_cols=68 Identities=9% Similarity=0.112 Sum_probs=49.0
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCC--HHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHH
Q 048504 132 VVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMD--SAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSM 207 (277)
Q Consensus 132 VLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d--~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L 207 (277)
+||....+ +.|++++.+|+..|++|+.+.++.. ....+++.+.... ..+|.+..+|..|-....+.+.
T Consensus 2 ~ly~~~~s------~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~--~~vP~L~~~~~~l~eS~aI~~Y 71 (76)
T cd03050 2 KLYYDLMS------QPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPF--GKVPAIVDGDFTLAESVAILRY 71 (76)
T ss_pred EEeeCCCC------hhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcC--CCCCEEEECCEEEEcHHHHHHH
Confidence 57887654 7999999999999999998777542 2233466666544 7899998888776665555543
No 81
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=96.23 E-value=0.0082 Score=48.91 Aligned_cols=46 Identities=11% Similarity=0.170 Sum_probs=39.4
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhC
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFG 182 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG 182 (277)
|+||+.+. |.-|++|+.+|+++|++|+++|+..++--.++|.+++.
T Consensus 1 i~iy~~~~------C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~ 46 (114)
T TIGR00014 1 VTIYHNPR------CSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFA 46 (114)
T ss_pred CEEEECCC------CHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHH
Confidence 57899975 57999999999999999999999988766777777764
No 82
>PRK10853 putative reductase; Provisional
Probab=96.15 E-value=0.0078 Score=49.70 Aligned_cols=46 Identities=13% Similarity=0.046 Sum_probs=39.8
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhC
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFG 182 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG 182 (277)
|+||+.+.| .-|++|+.+|+.+||+|+++|+..++--.++|.+.+.
T Consensus 2 i~iy~~~~C------~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~ 47 (118)
T PRK10853 2 VTLYGIKNC------DTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFID 47 (118)
T ss_pred EEEEcCCCC------HHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHH
Confidence 789999865 6999999999999999999999988766777777764
No 83
>PRK10026 arsenate reductase; Provisional
Probab=96.13 E-value=0.0095 Score=51.05 Aligned_cols=48 Identities=10% Similarity=0.014 Sum_probs=40.6
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhC
Q 048504 129 DRIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFG 182 (277)
Q Consensus 129 ~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG 182 (277)
..|+||+.+.| .-|++|+++|+++|++|+++|+..++--.++|+.++.
T Consensus 2 ~~i~iY~~p~C------st~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~ 49 (141)
T PRK10026 2 SNITIYHNPAC------GTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIA 49 (141)
T ss_pred CEEEEEeCCCC------HHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHH
Confidence 35899999865 6999999999999999999999888766677776653
No 84
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.11 E-value=0.027 Score=41.68 Aligned_cols=65 Identities=9% Similarity=0.006 Sum_probs=49.4
Q ss_pred CCCCCChhHHHHHHHHHhCCCeEEEEECCCCH-HHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHH
Q 048504 140 GIRRTFEDCYAVRMIFRGFRVWVDERDVSMDS-AYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKS 206 (277)
Q Consensus 140 giR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~-~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~ 206 (277)
+.+..++++.+++.+|+.+||+|+.+.++... ....++++.... ..+|.+..+|..|.....+.+
T Consensus 5 ~~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~--g~vP~L~~~g~~l~eS~aI~~ 70 (73)
T cd03043 5 GNKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPT--GKVPVLVDGGIVVWDSLAICE 70 (73)
T ss_pred cCCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCC--CcCCEEEECCEEEEcHHHHHH
Confidence 45667899999999999999999988776532 223566666543 789999999988777666554
No 85
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=96.08 E-value=0.01 Score=49.68 Aligned_cols=46 Identities=13% Similarity=0.107 Sum_probs=37.4
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHh
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVF 181 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~l 181 (277)
.|+||..+. |.-|++|+++|+.+||+|+++|+..++--.++|.+.+
T Consensus 2 ~i~iY~~p~------Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l 47 (126)
T TIGR01616 2 TIIFYEKPG------CANNARQKAALKASGHDVEVQDILKEPWHADTLRPYF 47 (126)
T ss_pred eEEEEeCCC------CHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHH
Confidence 478999976 4799999999999999999999987755555555544
No 86
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=96.02 E-value=0.033 Score=40.42 Aligned_cols=68 Identities=4% Similarity=-0.029 Sum_probs=49.4
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCC--HHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHHH
Q 048504 132 VVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMD--SAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSMY 208 (277)
Q Consensus 132 VLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d--~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L~ 208 (277)
.||+... ..+.+++.+|+..|++|+.+.++.. .....++++.... ..+|.+..+|..|.....+.+..
T Consensus 2 ~l~~~~~-------~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~--~~vP~l~~~g~~l~es~aI~~yL 71 (76)
T cd03046 2 TLYHLPR-------SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPL--GKVPVLVDGDLVLTESAAIILYL 71 (76)
T ss_pred EEEeCCC-------CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCC--CCCCEEEECCEEEEcHHHHHHHH
Confidence 4666542 3688999999999999998777643 1234556666543 78999999998888877776643
No 87
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=95.98 E-value=0.034 Score=35.90 Aligned_cols=56 Identities=27% Similarity=0.414 Sum_probs=41.3
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHH-----hCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCC
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFR-----GFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRG 195 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~-----~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G 195 (277)
|++|..++ |++|.+++..|+ ..++.|..+|+.......+.+ ...+ ...+|.+++.+
T Consensus 1 l~~~~~~~------c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAPW------CPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKEL-KRYG--VGGVPTLVVFG 61 (69)
T ss_pred CEEEECCC------ChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHH-HhCC--CccccEEEEEe
Confidence 45677765 479999999999 678999999998876554441 2233 37899997765
No 88
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=95.92 E-value=0.039 Score=40.68 Aligned_cols=67 Identities=10% Similarity=-0.053 Sum_probs=48.5
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCH-HHHHHHHHHhCCCCCCCcEEEeC-CEEEechhHHHH
Q 048504 132 VVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDS-AYKKELQCVFGGKNVTLPQVFIR-GKHVGNADVLKS 206 (277)
Q Consensus 132 VLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~-~~reELke~lG~~~~tvPqVFI~-G~~IGG~del~~ 206 (277)
+||+... ++.|.+++.+|+.+|++|+.++++... ...++++++... .++|.+..+ |..|-....+.+
T Consensus 2 ~Ly~~~~------~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~--~~vP~L~~~~g~~l~es~aI~~ 70 (75)
T cd03044 2 TLYTYPG------NPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPL--GKVPAFEGADGFCLFESNAIAY 70 (75)
T ss_pred eEecCCC------CccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCC--CCCCEEEcCCCCEEeeHHHHHH
Confidence 4666654 479999999999999999998887642 223566666644 789999885 766665555544
No 89
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=95.88 E-value=0.038 Score=40.58 Aligned_cols=67 Identities=7% Similarity=0.121 Sum_probs=47.0
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCH--HHHHHHHHHhCCCCCCCcEEEeC-CEEEechhHHHHH
Q 048504 132 VVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDS--AYKKELQCVFGGKNVTLPQVFIR-GKHVGNADVLKSM 207 (277)
Q Consensus 132 VLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~--~~reELke~lG~~~~tvPqVFI~-G~~IGG~del~~L 207 (277)
.||+...+ .+.+++.+|..+||+|+.++++... ...+++.++... ..+|.+..+ |..+.....+.+.
T Consensus 2 ~Ly~~~~~-------~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~--~~vP~l~~~~g~~l~eS~aI~~y 71 (77)
T cd03057 2 KLYYSPGA-------CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPK--GQVPALVLDDGEVLTESAAILQY 71 (77)
T ss_pred EEEeCCCC-------chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCC--CCCCEEEECCCcEEEcHHHHHHH
Confidence 57776532 4789999999999999887776532 234677777654 789999887 6666665555543
No 90
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=95.88 E-value=0.013 Score=43.23 Aligned_cols=63 Identities=11% Similarity=0.056 Sum_probs=47.2
Q ss_pred ChhHHHHHHHHHhCCCeEEEEECCC--CH-HHHHHHHHHhCCCCCCCcEEEe-CCEEEechhHHHHHHh
Q 048504 145 FEDCYAVRMIFRGFRVWVDERDVSM--DS-AYKKELQCVFGGKNVTLPQVFI-RGKHVGNADVLKSMYE 209 (277)
Q Consensus 145 c~~C~~Vk~iL~~~gV~y~ErDVs~--d~-~~reELke~lG~~~~tvPqVFI-~G~~IGG~del~~L~E 209 (277)
||++++++-+|+.+|++|+..-+.. +. ....++.++.+. .++|.+.. +|..|.....+.+..+
T Consensus 2 sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~--~~VP~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 2 SPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPR--GKVPVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp -HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT---SSSEEEETTTEEEESHHHHHHHHH
T ss_pred chHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcC--eEEEEEEECCCCEeeCHHHHHHHHh
Confidence 7999999999999999988655522 21 222567788765 78999997 8999998888877544
No 91
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=95.87 E-value=0.052 Score=49.87 Aligned_cols=76 Identities=13% Similarity=0.102 Sum_probs=55.6
Q ss_pred EEEEEecCCC--CCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHHH
Q 048504 131 IVVYLTSLRG--IRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSMY 208 (277)
Q Consensus 131 VVLYttSlcg--iR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L~ 208 (277)
|-||.+.... ....||+|++|+.+|..+||+|+.+.|+.... .+++.++... .++|.+..+|..|.....+.+..
T Consensus 3 ~el~~ka~~~~~~~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~-~~~fl~inP~--g~vPvL~~~g~~l~ES~aI~eYL 79 (236)
T TIGR00862 3 IELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRK-PEDLQNLAPG--THPPFLTYNTEVKTDVNKIEEFL 79 (236)
T ss_pred eEEEEecCCCCCcCCCCHhHHHHHHHHHHcCCCcEEEEECCCCC-CHHHHHHCcC--CCCCEEEECCEEeecHHHHHHHH
Confidence 4555554322 22578999999999999999998888765421 3567777644 68999988898888877777654
Q ss_pred h
Q 048504 209 E 209 (277)
Q Consensus 209 E 209 (277)
+
T Consensus 80 ~ 80 (236)
T TIGR00862 80 E 80 (236)
T ss_pred H
Confidence 4
No 92
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=95.79 E-value=0.053 Score=39.60 Aligned_cols=67 Identities=6% Similarity=-0.027 Sum_probs=48.6
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCC--HHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHH
Q 048504 132 VVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMD--SAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKS 206 (277)
Q Consensus 132 VLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d--~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~ 206 (277)
.||..... +.+.+|+.+|+.+|++|+.++++.. ....+++.+.... .++|.+..+|..|.....+.+
T Consensus 2 ~l~~~~~s------~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~--~~vP~L~~~~~~l~eS~aI~~ 70 (73)
T cd03047 2 TIWGRRSS------INVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPN--GRVPVLEDGDFVLWESNAILR 70 (73)
T ss_pred EEEecCCC------cchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCC--CCCCEEEECCEEEECHHHHHH
Confidence 57776643 6899999999999999998877642 2234566666544 689999888877766555543
No 93
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=95.68 E-value=0.089 Score=37.70 Aligned_cols=56 Identities=20% Similarity=0.342 Sum_probs=40.7
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHh-----CCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEe--CCEEE
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRG-----FRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFI--RGKHV 198 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~-----~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI--~G~~I 198 (277)
+++|++++ |+.|..+..+|+. .++.|..+|++.+..+ .+.++- ..+|.+++ +|+.+
T Consensus 14 ll~~~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~v--~~~P~~~~~~~g~~~ 76 (93)
T cd02947 14 VVDFWAPW------CGPCKAIAPVLEELAEEYPKVKFVKVDVDENPEL----AEEYGV--RSIPTFLFFKNGKEV 76 (93)
T ss_pred EEEEECCC------ChhHHHhhHHHHHHHHHCCCceEEEEECCCChhH----HHhcCc--ccccEEEEEECCEEE
Confidence 55555554 5799999999987 7888999999876544 334554 67999866 77743
No 94
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=95.67 E-value=0.1 Score=42.96 Aligned_cols=69 Identities=13% Similarity=0.164 Sum_probs=41.8
Q ss_pred CCcEEEEEecCCCCCCCChhHHHHHHHHH----hCCCeEEEEECCCCH--H-----HHHHHHHHhCC--CCCCCcEE--E
Q 048504 128 EDRIVVYLTSLRGIRRTFEDCYAVRMIFR----GFRVWVDERDVSMDS--A-----YKKELQCVFGG--KNVTLPQV--F 192 (277)
Q Consensus 128 ~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~----~~gV~y~ErDVs~d~--~-----~reELke~lG~--~~~tvPqV--F 192 (277)
...++||... .+||+|+.+.-+|+ ..++++..+|++.+. + -..++.+..+. ....+|.+ |
T Consensus 23 ~~~~iv~f~~-----~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~ 97 (122)
T TIGR01295 23 KETATFFIGR-----KTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHI 97 (122)
T ss_pred CCcEEEEEEC-----CCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEE
Confidence 3444555543 35689998666554 456889999998653 1 22344454432 12458988 5
Q ss_pred eCCEEEech
Q 048504 193 IRGKHVGNA 201 (277)
Q Consensus 193 I~G~~IGG~ 201 (277)
-+|+.|+..
T Consensus 98 k~Gk~v~~~ 106 (122)
T TIGR01295 98 TDGKQVSVR 106 (122)
T ss_pred eCCeEEEEE
Confidence 688766544
No 95
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=95.66 E-value=0.064 Score=46.92 Aligned_cols=68 Identities=13% Similarity=0.106 Sum_probs=52.2
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHH
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKS 206 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~ 206 (277)
.+.||+... |++|.+|+.+|+.+||+|+.+.|+.. ....++.++.-. .+||.+..+|..|-....+.+
T Consensus 10 ~~~Ly~~~~------s~~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~~~~nP~--g~VPvL~~~g~~l~ES~AIl~ 77 (211)
T PRK09481 10 VMTLFSGPT------DIYSHQVRIVLAEKGVSVEIEQVEKD-NLPQDLIDLNPY--QSVPTLVDRELTLYESRIIME 77 (211)
T ss_pred eeEEeCCCC------ChhHHHHHHHHHHCCCCCEEEeCCcc-cCCHHHHHhCCC--CCCCEEEECCEEeeCHHHHHH
Confidence 478999865 47999999999999999999888753 233567777543 689999988877666655554
No 96
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.037 Score=43.50 Aligned_cols=67 Identities=19% Similarity=0.232 Sum_probs=45.9
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHH----------hCCCCCCCcEEEeC-CEEEec
Q 048504 132 VVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCV----------FGGKNVTLPQVFIR-GKHVGN 200 (277)
Q Consensus 132 VLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~----------lG~~~~tvPqVFI~-G~~IGG 200 (277)
++|.+.+ ||+|..+.+.|++++|.|+++||...-...+++..+ -+.+....|.+.++ |+.|=|
T Consensus 5 ~lfgsn~------Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~ 78 (85)
T COG4545 5 KLFGSNL------CPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG 78 (85)
T ss_pred eeecccc------CcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe
Confidence 7888875 589999999999999999999997654433322222 12234788999765 455544
Q ss_pred hhHHH
Q 048504 201 ADVLK 205 (277)
Q Consensus 201 ~del~ 205 (277)
+++.
T Consensus 79 -~Dl~ 82 (85)
T COG4545 79 -DDLS 82 (85)
T ss_pred -chhh
Confidence 4443
No 97
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.61 E-value=0.021 Score=57.13 Aligned_cols=92 Identities=16% Similarity=0.177 Sum_probs=59.8
Q ss_pred chhhhccccccccccCCcccc-c----cccccCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHHhC-----CCeEEEEE
Q 048504 97 PQQHHLIKLTKPVKSLSLCYN-N----ESSIRLPGTEDRIVVYLTSLRGIRRTFEDCYAVRMIFRGF-----RVWVDERD 166 (277)
Q Consensus 97 ~~~~~~~~~l~~~~s~~~~~~-~----~~~i~~~~~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~-----gV~y~ErD 166 (277)
|+-|.-+.-+.++--.+.-++ . .+.|......-.|.+|.+.. ||+|..|..+++.+ .|..+-+|
T Consensus 82 P~g~Ef~s~i~~i~~~~~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~------Cp~Cp~~v~~~~~~a~~~p~i~~~~id 155 (515)
T TIGR03140 82 PGGHEFTSLVLAILQVGGHGPKLDEGIIDRIRRLNGPLHFETYVSLT------CQNCPDVVQALNQMALLNPNISHTMID 155 (515)
T ss_pred CCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEeCC------CCCCHHHHHHHHHHHHhCCCceEEEEE
Confidence 344555666655433332222 1 24566666677899999985 68999999888765 46666677
Q ss_pred CCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEec
Q 048504 167 VSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGN 200 (277)
Q Consensus 167 Vs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG 200 (277)
....+ ++.+..+. ..||++||||+.++.
T Consensus 156 ~~~~~----~~~~~~~v--~~VP~~~i~~~~~~~ 183 (515)
T TIGR03140 156 GALFQ----DEVEALGI--QGVPAVFLNGEEFHN 183 (515)
T ss_pred chhCH----HHHHhcCC--cccCEEEECCcEEEe
Confidence 66554 34444544 699999999986643
No 98
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.55 E-value=0.022 Score=56.88 Aligned_cols=91 Identities=14% Similarity=0.146 Sum_probs=60.1
Q ss_pred chhhhccccccccccCCcccc-----ccccccCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHHhC-----CCeEEEEE
Q 048504 97 PQQHHLIKLTKPVKSLSLCYN-----NESSIRLPGTEDRIVVYLTSLRGIRRTFEDCYAVRMIFRGF-----RVWVDERD 166 (277)
Q Consensus 97 ~~~~~~~~~l~~~~s~~~~~~-----~~~~i~~~~~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~-----gV~y~ErD 166 (277)
|+-|.-+.-+.++--.+.-.+ ..+.|......-.|.+|.+.. ||+|..|..+++.+ .|..+-+|
T Consensus 81 P~g~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~------Cp~Cp~~v~~~~~~a~~~~~i~~~~id 154 (517)
T PRK15317 81 PMGHEFTSLVLALLQVGGHPPKLDQEVIEQIKALDGDFHFETYVSLS------CHNCPDVVQALNLMAVLNPNITHTMID 154 (517)
T ss_pred CccHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEcCC------CCCcHHHHHHHHHHHHhCCCceEEEEE
Confidence 334555666555533222111 135566666677899999985 68999998888764 56677787
Q ss_pred CCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEe
Q 048504 167 VSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVG 199 (277)
Q Consensus 167 Vs~d~~~reELke~lG~~~~tvPqVFI~G~~IG 199 (277)
....++ +.+..+- ..||++||||+.+.
T Consensus 155 ~~~~~~----~~~~~~v--~~VP~~~i~~~~~~ 181 (517)
T PRK15317 155 GALFQD----EVEARNI--MAVPTVFLNGEEFG 181 (517)
T ss_pred chhCHh----HHHhcCC--cccCEEEECCcEEE
Confidence 776554 4445554 79999999998654
No 99
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=95.40 E-value=0.067 Score=41.41 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=37.6
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHH----------HhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEe
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIF----------RGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFI 193 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL----------~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI 193 (277)
+|.|+++| |++|+.....+ .. ++.+..+|++.+.....++.+.++- .++|.+++
T Consensus 15 lv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i--~~~Pti~~ 78 (104)
T cd02953 15 FVDFTADW------CVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGV--FGPPTYLF 78 (104)
T ss_pred EEEEEcch------hHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCC--CCCCEEEE
Confidence 45566665 57999876443 22 6888889998766555677777765 78998843
No 100
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=94.99 E-value=0.12 Score=41.06 Aligned_cols=66 Identities=12% Similarity=0.156 Sum_probs=44.6
Q ss_pred CcEE-EEEecCCCCCCCChhHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE--EeCCEEEec
Q 048504 129 DRIV-VYLTSLRGIRRTFEDCYAVRMIFRGF-----RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQV--FIRGKHVGN 200 (277)
Q Consensus 129 ~kVV-LYttSlcgiR~Tc~~C~~Vk~iL~~~-----gV~y~ErDVs~d~~~reELke~lG~~~~tvPqV--FI~G~~IGG 200 (277)
..|+ .|+++|| +.|+.+...|+.+ ++.|..+|++.+ +|.+.++- ..+|.+ |-+|+.++-
T Consensus 25 ~~vvv~F~a~~c------~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-----~l~~~~~i--~~~Pt~~~f~~G~~v~~ 91 (113)
T cd02957 25 TRVVVHFYEPGF------PRCKILDSHLEELAAKYPETKFVKINAEKA-----FLVNYLDI--KVLPTLLVYKNGELIDN 91 (113)
T ss_pred CEEEEEEeCCCC------CcHHHHHHHHHHHHHHCCCcEEEEEEchhh-----HHHHhcCC--CcCCEEEEEECCEEEEE
Confidence 3444 4666665 6999888888752 577888888643 56666654 688977 669988765
Q ss_pred hhHHHHH
Q 048504 201 ADVLKSM 207 (277)
Q Consensus 201 ~del~~L 207 (277)
..-+..+
T Consensus 92 ~~G~~~~ 98 (113)
T cd02957 92 IVGFEEL 98 (113)
T ss_pred EecHHHh
Confidence 5444443
No 101
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=94.92 E-value=0.081 Score=47.00 Aligned_cols=57 Identities=18% Similarity=0.320 Sum_probs=42.1
Q ss_pred CCcEEEEEecCCCCCCCChhHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCE
Q 048504 128 EDRIVVYLTSLRGIRRTFEDCYAVRMIFRGF-----RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGK 196 (277)
Q Consensus 128 ~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~-----gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~ 196 (277)
.-.|++|+++|| ++|..++.+|+.+ .|.+..+|+..+++ +.+.+|- ..+|+++|+++
T Consensus 134 pv~I~~F~a~~C------~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~----~~~~~~V--~~vPtl~i~~~ 195 (215)
T TIGR02187 134 PVRIEVFVTPTC------PYCPYAVLMAHKFALANDKILGEMIEANENPD----LAEKYGV--MSVPKIVINKG 195 (215)
T ss_pred CcEEEEEECCCC------CCcHHHHHHHHHHHHhcCceEEEEEeCCCCHH----HHHHhCC--ccCCEEEEecC
Confidence 335777999876 6999999988864 46777788887654 4455654 78999988753
No 102
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=94.88 E-value=0.068 Score=42.82 Aligned_cols=38 Identities=11% Similarity=0.104 Sum_probs=27.6
Q ss_pred CChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHh
Q 048504 144 TFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVF 181 (277)
Q Consensus 144 Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~l 181 (277)
.|.-|++|+++|+.+||.|+++|+..++--+++|.+++
T Consensus 5 ~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l 42 (110)
T PF03960_consen 5 NCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELL 42 (110)
T ss_dssp T-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHH
Confidence 57899999999999999999999998766666666554
No 103
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=94.69 E-value=0.14 Score=39.34 Aligned_cols=57 Identities=21% Similarity=0.265 Sum_probs=39.8
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHh------CCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEe--CCEEEe
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRG------FRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFI--RGKHVG 199 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~------~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI--~G~~IG 199 (277)
+++|.+++ |+.|+.+..+|+. .++.+..+|++.+++ +.+.++- ..+|.+++ +|+.++
T Consensus 17 lv~f~a~~------C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~----l~~~~~v--~~vPt~~i~~~g~~v~ 81 (97)
T cd02949 17 LVLYTSPT------CGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQE----IAEAAGI--MGTPTVQFFKDKELVK 81 (97)
T ss_pred EEEEECCC------ChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH----HHHHCCC--eeccEEEEEECCeEEE
Confidence 44555565 5799999888876 457888999988764 4455554 68898754 776553
No 104
>PHA02278 thioredoxin-like protein
Probab=94.48 E-value=0.17 Score=40.63 Aligned_cols=60 Identities=13% Similarity=0.240 Sum_probs=40.3
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhC------CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE--EeCCEEE
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGF------RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQV--FIRGKHV 198 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~------gV~y~ErDVs~d~~~reELke~lG~~~~tvPqV--FI~G~~I 198 (277)
||-|+++|| ..|+.+.-+|+.. .+++..+|++.++....++.+.++- .++|++ |=||+.+
T Consensus 18 vV~F~A~WC------gpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I--~~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNC------GKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDI--MSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCCC------HHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCC--ccccEEEEEECCEEE
Confidence 445556665 6999888777553 3568889998763224456777754 788887 4588755
No 105
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=94.45 E-value=0.38 Score=36.10 Aligned_cols=70 Identities=14% Similarity=0.072 Sum_probs=46.4
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHH
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSM 207 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L 207 (277)
++||....+ ..|.+++.+|+..|++|+.+.++...++. ++..-.......+|.+.+||..|.....+...
T Consensus 2 ~~Ly~~~~~------~~~~~v~~~l~~~gi~~e~~~v~~~~~~~-~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~Y 71 (79)
T cd03077 2 PVLHYFNGR------GRMESIRWLLAAAGVEFEEKFIESAEDLE-KLKKDGSLMFQQVPMVEIDGMKLVQTRAILNY 71 (79)
T ss_pred CEEEEeCCC------ChHHHHHHHHHHcCCCcEEEEeccHHHHH-hhccccCCCCCCCCEEEECCEEEeeHHHHHHH
Confidence 467887654 48899999999999999988776533321 11110000125799999899877766665543
No 106
>PRK15113 glutathione S-transferase; Provisional
Probab=93.97 E-value=0.27 Score=43.10 Aligned_cols=71 Identities=8% Similarity=0.033 Sum_probs=50.9
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCC--HHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHH
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMD--SAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKS 206 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d--~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~ 206 (277)
.++||.... .++++|.+|+.+|..+||+|+.+.++.. ....+++.++.-. ..||.+.+||..|-....+.+
T Consensus 5 ~~~Ly~~~~----~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~--g~VP~L~~~~~~l~ES~aI~~ 77 (214)
T PRK15113 5 AITLYSDAH----FFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLT--RRVPTLQHDDFELSESSAIAE 77 (214)
T ss_pred eEEEEeCCC----CCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCC--CCCCEEEECCEEEecHHHHHH
Confidence 378998652 1257999999999999999988777642 2233567776643 689999988876665555544
No 107
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=93.83 E-value=0.19 Score=46.63 Aligned_cols=61 Identities=16% Similarity=0.148 Sum_probs=45.7
Q ss_pred CChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHH
Q 048504 144 TFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSM 207 (277)
Q Consensus 144 Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L 207 (277)
.||+|++|+.+|+.+||+|+.+.|+... .-+++.++.-. ..+|.+..+|..|.....+.+.
T Consensus 72 ~cp~s~rV~i~L~ekgi~ye~~~vdl~~-~~~~fl~iNP~--GkVPvL~~d~~~L~ES~aI~~Y 132 (265)
T PLN02817 72 DCPFCQRVLLTLEEKHLPYDMKLVDLTN-KPEWFLKISPE--GKVPVVKLDEKWVADSDVITQA 132 (265)
T ss_pred CCcHHHHHHHHHHHcCCCCEEEEeCcCc-CCHHHHhhCCC--CCCCEEEECCEEEecHHHHHHH
Confidence 4789999999999999999977665432 22455666533 6899999999887776666654
No 108
>PLN02378 glutathione S-transferase DHAR1
Probab=93.49 E-value=0.23 Score=43.73 Aligned_cols=61 Identities=10% Similarity=0.017 Sum_probs=45.0
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHH
Q 048504 143 RTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKS 206 (277)
Q Consensus 143 ~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~ 206 (277)
.+||+|++|+.+|+.+|++|+.+.|+... --+++.++... .++|.+-.+|..|.....+.+
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~-~~~~~l~inP~--G~VPvL~~~~~~l~ES~aI~~ 78 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSD-KPQWFLDISPQ--GKVPVLKIDDKWVTDSDVIVG 78 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCccc-CCHHHHHhCCC--CCCCEEEECCEEecCHHHHHH
Confidence 46899999999999999999876665432 12356666544 689999888877666555554
No 109
>PLN02473 glutathione S-transferase
Probab=93.47 E-value=0.32 Score=42.14 Aligned_cols=69 Identities=13% Similarity=-0.010 Sum_probs=49.8
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCC--HHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHH
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMD--SAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSM 207 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d--~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L 207 (277)
+.||.... .+.+.+|+-+|..+||+|+.+.++.. .....++.++... ..+|.+..+|..|.....+.+.
T Consensus 3 ~kLy~~~~------s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~--g~vP~L~~~g~~l~ES~aI~~Y 73 (214)
T PLN02473 3 VKVYGQIK------AANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPF--GQVPAIEDGDLKLFESRAIARY 73 (214)
T ss_pred eEEecCCC------CCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCC--CCCCeEEECCEEEEehHHHHHH
Confidence 46787654 46899999999999999987755422 2233455555433 6899999999888887777763
No 110
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=93.39 E-value=0.34 Score=36.27 Aligned_cols=61 Identities=26% Similarity=0.445 Sum_probs=41.5
Q ss_pred CCcEEEEEecCCCCCCCChhHHHHHHHHHh----C--CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE--EeCCEEEe
Q 048504 128 EDRIVVYLTSLRGIRRTFEDCYAVRMIFRG----F--RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQV--FIRGKHVG 199 (277)
Q Consensus 128 ~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~----~--gV~y~ErDVs~d~~~reELke~lG~~~~tvPqV--FI~G~~IG 199 (277)
...|+||..+ ..|+.|+.++..|.. + +|.|..+|++.++ +|.+.++- ..+|.+ |-+|+.+.
T Consensus 17 ~~~vvv~f~~-----~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----~l~~~~~v--~~~Pt~~~~~~g~~~~ 85 (103)
T PF00085_consen 17 DKPVVVYFYA-----PWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENK----ELCKKYGV--KSVPTIIFFKNGKEVK 85 (103)
T ss_dssp SSEEEEEEES-----TTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSH----HHHHHTTC--SSSSEEEEEETTEEEE
T ss_pred CCCEEEEEeC-----CCCCccccccceecccccccccccccchhhhhccc----hhhhccCC--CCCCEEEEEECCcEEE
Confidence 3455555544 246899999888754 2 5889999998774 45556654 789988 45776554
No 111
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=93.38 E-value=0.59 Score=37.60 Aligned_cols=60 Identities=20% Similarity=0.208 Sum_probs=41.8
Q ss_pred CcEEEEEe-cCCCCCCCChhHHHHHHHHHh-----CCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE--EeCCEEEec
Q 048504 129 DRIVVYLT-SLRGIRRTFEDCYAVRMIFRG-----FRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQV--FIRGKHVGN 200 (277)
Q Consensus 129 ~kVVLYtt-SlcgiR~Tc~~C~~Vk~iL~~-----~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqV--FI~G~~IGG 200 (277)
..|+||+. +| |+.|+.+...|+. .++.|..+|++..++ +.+..+- ..+|.+ |-+|+.|+-
T Consensus 23 ~~vvV~f~a~~------c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~----l~~~~~v--~~vPt~l~fk~G~~v~~ 90 (113)
T cd02989 23 ERVVCHFYHPE------FFRCKIMDKHLEILAKKHLETKFIKVNAEKAPF----LVEKLNI--KVLPTVILFKNGKTVDR 90 (113)
T ss_pred CcEEEEEECCC------CccHHHHHHHHHHHHHHcCCCEEEEEEcccCHH----HHHHCCC--ccCCEEEEEECCEEEEE
Confidence 45555554 55 5799988888865 258899999988754 5555654 678887 568876643
No 112
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.06 E-value=0.18 Score=51.12 Aligned_cols=66 Identities=17% Similarity=0.176 Sum_probs=48.5
Q ss_pred ccccCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHHh----C-CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeC
Q 048504 120 SSIRLPGTEDRIVVYLTSLRGIRRTFEDCYAVRMIFRG----F-RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIR 194 (277)
Q Consensus 120 ~~i~~~~~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~----~-gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~ 194 (277)
+.|......-.|.+|.+++ ||+|..+.+.++. . +|..+.+|+...+ ++.+..+- ..+|.++||
T Consensus 469 ~~i~~~~~~~~i~v~~~~~------C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~----~~~~~~~v--~~vP~~~i~ 536 (555)
T TIGR03143 469 EKIKKITKPVNIKIGVSLS------CTLCPDVVLAAQRIASLNPNVEAEMIDVSHFP----DLKDEYGI--MSVPAIVVD 536 (555)
T ss_pred HHHHhcCCCeEEEEEECCC------CCCcHHHHHHHHHHHHhCCCceEEEEECcccH----HHHHhCCc--eecCEEEEC
Confidence 4566555666799999885 5788877776554 4 7999999998765 44444554 789999999
Q ss_pred CEE
Q 048504 195 GKH 197 (277)
Q Consensus 195 G~~ 197 (277)
|+.
T Consensus 537 ~~~ 539 (555)
T TIGR03143 537 DQQ 539 (555)
T ss_pred CEE
Confidence 963
No 113
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=93.06 E-value=0.22 Score=42.86 Aligned_cols=61 Identities=13% Similarity=0.079 Sum_probs=45.8
Q ss_pred ChhHHHHHHHHHhCCCeEEEEECCC-C--HHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHH
Q 048504 145 FEDCYAVRMIFRGFRVWVDERDVSM-D--SAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSM 207 (277)
Q Consensus 145 c~~C~~Vk~iL~~~gV~y~ErDVs~-d--~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L 207 (277)
++.+.+|+.+|..+||+|+.+.++. . .....++.+.... .++|.+.+||..|-....+.+.
T Consensus 8 s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~--g~vP~L~~~g~~l~ES~aI~~y 71 (210)
T TIGR01262 8 SSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQ--GLVPTLDIDGEVLTQSLAIIEY 71 (210)
T ss_pred CCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCC--CcCCEEEECCEEeecHHHHHHH
Confidence 4789999999999999999887764 1 1123456666533 7899999999888777766653
No 114
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=93.02 E-value=0.54 Score=38.91 Aligned_cols=57 Identities=14% Similarity=0.278 Sum_probs=41.5
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhC-----C-CeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE--EeCCEEEe
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGF-----R-VWVDERDVSMDSAYKKELQCVFGGKNVTLPQV--FIRGKHVG 199 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~-----g-V~y~ErDVs~d~~~reELke~lG~~~~tvPqV--FI~G~~IG 199 (277)
||-|+.+|| +.|+.+.-+|+.+ + +.|..+|++.++ +|.+..|- ..+|.+ |-+|+.++
T Consensus 18 VV~F~A~WC------gpCk~m~P~le~la~~~~~~v~f~kVDvD~~~----~la~~~~V--~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 18 VIRFGRDWD------PVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVP----DFNKMYEL--YDPPTVMFFFRNKHMK 82 (114)
T ss_pred EEEEECCCC------hhHHHHHHHHHHHHHHccCceEEEEEECCCCH----HHHHHcCC--CCCCEEEEEECCEEEE
Confidence 445777776 6999998888653 2 578899999876 45566664 679987 56888764
No 115
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=92.91 E-value=1.1 Score=33.31 Aligned_cols=49 Identities=18% Similarity=0.395 Sum_probs=34.2
Q ss_pred CChhHHHHHHHHHh----C--CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEe--CCEEE
Q 048504 144 TFEDCYAVRMIFRG----F--RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFI--RGKHV 198 (277)
Q Consensus 144 Tc~~C~~Vk~iL~~----~--gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI--~G~~I 198 (277)
.|+.|+.+...|+. + .+.|..+|++.+.. +.+.+|- ..+|.+++ +|+.+
T Consensus 25 ~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v--~~~P~~~~~~~g~~~ 81 (101)
T TIGR01068 25 WCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD----IAAKYGI--RSIPTLLLFKNGKEV 81 (101)
T ss_pred CCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHH----HHHHcCC--CcCCEEEEEeCCcEe
Confidence 35799988777754 2 47888999887754 4455654 68998866 76644
No 116
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=92.84 E-value=0.74 Score=35.63 Aligned_cols=68 Identities=16% Similarity=0.118 Sum_probs=36.9
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHh---------CCCeEEEEECCCCHH----------------HHHHHHHHhCCC
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRG---------FRVWVDERDVSMDSA----------------YKKELQCVFGGK 184 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~---------~gV~y~ErDVs~d~~----------------~reELke~lG~~ 184 (277)
.|++|+.. .|++|+++...+.. .++.+..+++..+.. ...+|.+.+|-
T Consensus 8 ~v~~F~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v- 80 (112)
T PF13098_consen 8 IVVVFTDP------WCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV- 80 (112)
T ss_dssp EEEEEE-T------T-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred EEEEEECC------CCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC-
Confidence 35555555 46899988666542 145566777765432 12456666764
Q ss_pred CCCCcEEE-eC--CE---EEechhHHH
Q 048504 185 NVTLPQVF-IR--GK---HVGNADVLK 205 (277)
Q Consensus 185 ~~tvPqVF-I~--G~---~IGG~del~ 205 (277)
...|.++ +| |+ .+-|+-.-.
T Consensus 81 -~gtPt~~~~d~~G~~v~~~~G~~~~~ 106 (112)
T PF13098_consen 81 -NGTPTIVFLDKDGKIVYRIPGYLSPE 106 (112)
T ss_dssp --SSSEEEECTTTSCEEEEEESS--HH
T ss_pred -CccCEEEEEcCCCCEEEEecCCCCHH
Confidence 6788884 55 66 455654433
No 117
>PTZ00051 thioredoxin; Provisional
Probab=92.54 E-value=0.82 Score=34.52 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=38.0
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHh-----CCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE--EeCCEEEe
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRG-----FRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQV--FIRGKHVG 199 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~-----~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqV--FI~G~~IG 199 (277)
|+.|+.+| |+.|+.+...|+. .++.|..+|++... .+.+.++- ..+|.+ |-+|+.++
T Consensus 22 li~f~~~~------C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~----~~~~~~~v--~~~Pt~~~~~~g~~~~ 85 (98)
T PTZ00051 22 IVDFYAEW------CGPCKRIAPFYEECSKEYTKMVFVKVDVDELS----EVAEKENI--TSMPTFKVFKNGSVVD 85 (98)
T ss_pred EEEEECCC------CHHHHHHhHHHHHHHHHcCCcEEEEEECcchH----HHHHHCCC--ceeeEEEEEeCCeEEE
Confidence 44555555 5799999888876 36888888987654 34455554 678876 44775553
No 118
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.37 E-value=0.085 Score=51.91 Aligned_cols=50 Identities=28% Similarity=0.637 Sum_probs=39.8
Q ss_pred CCCCCCCCcc------ceEeCCCCCCcceeeeCC----CCcceeCCCCCcCcee---eCCCCC
Q 048504 226 GFVCGSCGDV------RFVPCGNCSGSRKVFDEA----DGVPKRCLECNENGLI---RCPDCC 275 (277)
Q Consensus 226 ~~~C~~CGg~------rfVpC~~C~GS~Kv~~~~----~~~~~rC~~CNEnGLv---rCp~C~ 275 (277)
...|..|.|. .-+.|+.|+|+-.+.... ......|+.||-.|-+ +|+.|.
T Consensus 142 ~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~ 204 (371)
T COG0484 142 SVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCK 204 (371)
T ss_pred eeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCCCCC
Confidence 4689999888 667799999998765433 2347899999999987 599995
No 119
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.35 E-value=0.18 Score=43.91 Aligned_cols=56 Identities=20% Similarity=0.321 Sum_probs=42.6
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhC------CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE--EeCCEEE
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGF------RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQV--FIRGKHV 198 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~------gV~y~ErDVs~d~~~reELke~lG~~~~tvPqV--FI~G~~I 198 (277)
+|-|...||| .|+.+.-+|+.+ .|.+..+|++.+.+ |.+..+- ..+|.| |-||+-+
T Consensus 65 lVdF~A~WCg------PCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~e----la~~Y~I--~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 65 LVDFHAEWCG------PCKMLGPILEELVSEYAGKFKLYKVDTDEHPE----LAEDYEI--SAVPTVLVFKNGEKV 128 (150)
T ss_pred EEEEecCcCc------cHhHhhHHHHHHHHhhcCeEEEEEEccccccc----hHhhcce--eeeeEEEEEECCEEe
Confidence 7779999986 999888888764 46678899988864 4555654 678887 6788754
No 120
>PRK11752 putative S-transferase; Provisional
Probab=92.31 E-value=0.78 Score=42.13 Aligned_cols=73 Identities=10% Similarity=0.140 Sum_probs=49.8
Q ss_pred CCCCCcEEEEEecCCCCCCCChhHHHHHHHHHhC------CCeEEEEECCC--CHHHHHHHHHHhCCCCCCCcEEEeCC-
Q 048504 125 PGTEDRIVVYLTSLRGIRRTFEDCYAVRMIFRGF------RVWVDERDVSM--DSAYKKELQCVFGGKNVTLPQVFIRG- 195 (277)
Q Consensus 125 ~~~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~------gV~y~ErDVs~--d~~~reELke~lG~~~~tvPqVFI~G- 195 (277)
+.+.+.+.||+.. .++|++|+.+|+.+ |++|+.+.|+. ......++.++.-. .+||.+..++
T Consensus 39 ~~~~~~~~Ly~~~-------s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~--GkVP~Lv~~dg 109 (264)
T PRK11752 39 PVGKHPLQLYSLG-------TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPN--SKIPALLDRSG 109 (264)
T ss_pred CCCCCCeEEecCC-------CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCC--CCCCEEEeCCC
Confidence 4456689999854 37999999999986 88888766643 22234566666543 6899997753
Q ss_pred ---EEEechhHHHH
Q 048504 196 ---KHVGNADVLKS 206 (277)
Q Consensus 196 ---~~IGG~del~~ 206 (277)
..|-....+.+
T Consensus 110 ~~~~~L~ES~AIl~ 123 (264)
T PRK11752 110 NPPIRVFESGAILL 123 (264)
T ss_pred CCCeEEEcHHHHHH
Confidence 45555555554
No 121
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=92.14 E-value=0.72 Score=40.95 Aligned_cols=63 Identities=19% Similarity=0.274 Sum_probs=42.3
Q ss_pred CCCCcEEEEEe---cCCCCCCCChhHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEe--CC
Q 048504 126 GTEDRIVVYLT---SLRGIRRTFEDCYAVRMIFRGF-----RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFI--RG 195 (277)
Q Consensus 126 ~~~~kVVLYtt---SlcgiR~Tc~~C~~Vk~iL~~~-----gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI--~G 195 (277)
...-.|++|++ +|| +.|+.+..+|+.. ++.+..+|++.|. ..++.+.++- ..+|.+.+ ||
T Consensus 18 ~~~~~i~~f~~~~a~wC------~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~--~~~l~~~~~V--~~~Pt~~~f~~g 87 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGC------QYCKETEQLLEELSEVSPKLKLEIYDFDTPE--DKEEAEKYGV--ERVPTTIILEEG 87 (215)
T ss_pred CCCeEEEEEcCCCCCCC------CchHHHHHHHHHHHhhCCCceEEEEecCCcc--cHHHHHHcCC--CccCEEEEEeCC
Confidence 34456889988 776 6999999888764 3556677777542 2355666664 78999855 55
Q ss_pred EEE
Q 048504 196 KHV 198 (277)
Q Consensus 196 ~~I 198 (277)
+.+
T Consensus 88 ~~~ 90 (215)
T TIGR02187 88 KDG 90 (215)
T ss_pred eee
Confidence 443
No 122
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=92.07 E-value=0.8 Score=36.59 Aligned_cols=57 Identities=16% Similarity=0.176 Sum_probs=34.5
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHH---------hCCCeEEEEECCCCHHH---------HHHHHHHhCCCCCCCcEE-
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFR---------GFRVWVDERDVSMDSAY---------KKELQCVFGGKNVTLPQV- 191 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~---------~~gV~y~ErDVs~d~~~---------reELke~lG~~~~tvPqV- 191 (277)
+|.|.++| |++|++....|. ..++.+..+|++.+... ..+|....+. ..+|.+
T Consensus 18 lv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v--~~~Pt~~ 89 (125)
T cd02951 18 LLLFSQPG------CPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV--RFTPTVI 89 (125)
T ss_pred EEEEeCCC------CHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCC--ccccEEE
Confidence 44555555 579998765442 12466677787754211 2466666664 689986
Q ss_pred EeCC
Q 048504 192 FIRG 195 (277)
Q Consensus 192 FI~G 195 (277)
|+++
T Consensus 90 ~~~~ 93 (125)
T cd02951 90 FLDP 93 (125)
T ss_pred EEcC
Confidence 5654
No 123
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=91.98 E-value=0.64 Score=38.38 Aligned_cols=65 Identities=18% Similarity=0.299 Sum_probs=45.1
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHhC------CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE--EeCCEEE
Q 048504 127 TEDRIVVYLTSLRGIRRTFEDCYAVRMIFRGF------RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQV--FIRGKHV 198 (277)
Q Consensus 127 ~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~------gV~y~ErDVs~d~~~reELke~lG~~~~tvPqV--FI~G~~I 198 (277)
+...|+.|+..| ..||.|..+.-+|+.. .+.|..+|++.++ +|....+- .++|.+ |-+|+.+
T Consensus 27 ~~~~v~~f~~~~----~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~----~la~~f~V--~sIPTli~fkdGk~v 96 (111)
T cd02965 27 GGDLVLLLAGDP----VRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ----ALAARFGV--LRTPALLFFRDGRYV 96 (111)
T ss_pred CCCEEEEecCCc----ccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH----HHHHHcCC--CcCCEEEEEECCEEE
Confidence 344566666654 1378999999888753 2567788888775 56666754 788987 5699887
Q ss_pred ech
Q 048504 199 GNA 201 (277)
Q Consensus 199 GG~ 201 (277)
+..
T Consensus 97 ~~~ 99 (111)
T cd02965 97 GVL 99 (111)
T ss_pred EEE
Confidence 654
No 124
>PLN02395 glutathione S-transferase
Probab=91.79 E-value=0.74 Score=39.80 Aligned_cols=69 Identities=10% Similarity=0.028 Sum_probs=49.9
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCC--HHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHHH
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMD--SAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSMY 208 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d--~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L~ 208 (277)
+.||.... ..+.+|+.+|..+|++|+.+.|+.. .....++.+..-. .++|.+..+|..|-....+.+..
T Consensus 3 ~~ly~~~~-------~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~--g~vP~L~~~~~~l~ES~aI~~YL 73 (215)
T PLN02395 3 LKVYGPAF-------ASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPF--GVVPVIVDGDYKIFESRAIMRYY 73 (215)
T ss_pred EEEEcCCc-------CcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCC--CCCCEEEECCEEEEcHHHHHHHH
Confidence 67887432 3679999999999999998877642 1223567776543 68999998888777777766643
No 125
>PRK09381 trxA thioredoxin; Provisional
Probab=91.74 E-value=1 Score=34.95 Aligned_cols=57 Identities=12% Similarity=0.330 Sum_probs=38.9
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHh----C--CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEe--CCEEEe
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRG----F--RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFI--RGKHVG 199 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~----~--gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI--~G~~IG 199 (277)
|+.|.+++ |+.|..+...|+. + ++.+..+|++.++.. .+.++- .++|.+++ +|+.++
T Consensus 25 vv~f~~~~------C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~----~~~~~v--~~~Pt~~~~~~G~~~~ 89 (109)
T PRK09381 25 LVDFWAEW------CGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT----APKYGI--RGIPTLLLFKNGEVAA 89 (109)
T ss_pred EEEEECCC------CHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhH----HHhCCC--CcCCEEEEEeCCeEEE
Confidence 45555655 5899988777754 2 467888998876543 344554 78998855 888764
No 126
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=91.72 E-value=1.3 Score=34.61 Aligned_cols=60 Identities=8% Similarity=0.022 Sum_probs=39.8
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEE--eCCEEE
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGF-----RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVF--IRGKHV 198 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~-----gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVF--I~G~~I 198 (277)
-||.|..+|| +.|+.....|+.+ ++.|..+|++.+... .+|.+..+- ..+|.++ -+|+.+
T Consensus 18 vvv~F~a~wC------~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~-~~l~~~~~V--~~~Pt~~~~~~G~~v 84 (103)
T cd02985 18 VVLEFALKHS------GPSVKIYPTMVKLSRTCNDVVFLLVNGDENDST-MELCRREKI--IEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEEECCCC------HhHHHHhHHHHHHHHHCCCCEEEEEECCCChHH-HHHHHHcCC--CcCCEEEEEeCCeEE
Confidence 3555666665 6999888777652 577888998776432 355555554 6789764 478644
No 127
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=91.62 E-value=0.63 Score=42.86 Aligned_cols=61 Identities=18% Similarity=0.128 Sum_probs=50.6
Q ss_pred CChhHHHHHHHHHhCCCeEE--EEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHHHh
Q 048504 144 TFEDCYAVRMIFRGFRVWVD--ERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSMYE 209 (277)
Q Consensus 144 Tc~~C~~Vk~iL~~~gV~y~--ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L~E 209 (277)
-|++|+++-+.|..++++|. .+|++.-+ ++++.+.+. ..+|.|-+||+.+-+.+.+.+..|
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp---~~f~~~sp~--~~~P~l~~d~~~~tDs~~Ie~~Le 82 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKP---EWFLDISPG--GKPPVLKFDEKWVTDSDKIEEFLE 82 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCc---HHHHhhCCC--CCCCeEEeCCceeccHHHHHHHHH
Confidence 68999999999999999875 67777665 467778865 789999999999999888876543
No 128
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=91.52 E-value=0.52 Score=36.13 Aligned_cols=54 Identities=11% Similarity=0.122 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHHH
Q 048504 146 EDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSMY 208 (277)
Q Consensus 146 ~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L~ 208 (277)
+.|.++..+|+..|++|+.+++..... ... ...+|.|-+||+.|++...+....
T Consensus 18 ~~~~kv~~~L~elglpye~~~~~~~~~-------~~P--~GkVP~L~~dg~vI~eS~aIl~yL 71 (74)
T cd03079 18 ASCLAVQTFLKMCNLPFNVRCRANAEF-------MSP--SGKVPFIRVGNQIVSEFGPIVQFV 71 (74)
T ss_pred CCHHHHHHHHHHcCCCcEEEecCCccc-------cCC--CCcccEEEECCEEEeCHHHHHHHH
Confidence 589999999999999999887543111 111 146999999999999988877643
No 129
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=91.22 E-value=0.16 Score=33.92 Aligned_cols=29 Identities=34% Similarity=0.770 Sum_probs=23.4
Q ss_pred eEeCCCCCCcceeeeC---CCCcceeCCCCCc
Q 048504 237 FVPCGNCSGSRKVFDE---ADGVPKRCLECNE 265 (277)
Q Consensus 237 fVpC~~C~GS~Kv~~~---~~~~~~rC~~CNE 265 (277)
.+-|++|+...++-++ ..+..+||+.|.+
T Consensus 2 ~i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~ 33 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDDKLPAGGRKVRCPKCGH 33 (37)
T ss_pred EEECCCCCceEEcCHHHcccCCcEEECCCCCc
Confidence 3679999999998665 4566899999975
No 130
>PRK10996 thioredoxin 2; Provisional
Probab=91.06 E-value=0.72 Score=38.37 Aligned_cols=56 Identities=16% Similarity=0.300 Sum_probs=37.6
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHh------CCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEE--eCCEEE
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRG------FRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVF--IRGKHV 198 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~------~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVF--I~G~~I 198 (277)
||.|+++| |+.|+.....|.. .++.|..+|++.+++ +.+.++- ..+|.++ -+|+.+
T Consensus 56 vv~F~a~w------C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~----l~~~~~V--~~~Ptlii~~~G~~v 119 (139)
T PRK10996 56 VIDFWAPW------CGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERE----LSARFRI--RSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEECCC------CHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHH----HHHhcCC--CccCEEEEEECCEEE
Confidence 55556665 5799987777754 246778888887654 4555554 6788874 488755
No 131
>PTZ00057 glutathione s-transferase; Provisional
Probab=91.05 E-value=2.1 Score=37.20 Aligned_cols=71 Identities=13% Similarity=0.219 Sum_probs=48.3
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHH-HHHHHHHHh---CCCCCCCcEEEeCCEEEechhHH
Q 048504 129 DRIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSA-YKKELQCVF---GGKNVTLPQVFIRGKHVGNADVL 204 (277)
Q Consensus 129 ~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~-~reELke~l---G~~~~tvPqVFI~G~~IGG~del 204 (277)
++++||.-..+ ..+..|+.+|+..||+|+.+.+....+ +. +..+.. ......+|.+.+||..|.....+
T Consensus 3 ~~~~L~y~~~~------~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~-~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI 75 (205)
T PTZ00057 3 EEIVLYYFDAR------GKAELIRLIFAYLGIEYTDKRFGENGDAFI-EFKNFKKEKDTPFEQVPILEMDNIIFAQSQAI 75 (205)
T ss_pred CceEEEecCCC------cchHHHHHHHHHcCCCeEEEeccccchHHH-HHHhccccCCCCCCCCCEEEECCEEEecHHHH
Confidence 34788887655 378999999999999999988754321 11 111111 12237899999999877766665
Q ss_pred HH
Q 048504 205 KS 206 (277)
Q Consensus 205 ~~ 206 (277)
..
T Consensus 76 ~~ 77 (205)
T PTZ00057 76 VR 77 (205)
T ss_pred HH
Confidence 55
No 132
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=90.93 E-value=1 Score=39.32 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=40.3
Q ss_pred cEEEEE-ecCCCCCCCChhHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE--EeCCEEEech
Q 048504 130 RIVVYL-TSLRGIRRTFEDCYAVRMIFRGF-----RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQV--FIRGKHVGNA 201 (277)
Q Consensus 130 kVVLYt-tSlcgiR~Tc~~C~~Vk~iL~~~-----gV~y~ErDVs~d~~~reELke~lG~~~~tvPqV--FI~G~~IGG~ 201 (277)
.|||++ .+| |+.|+.+..+|+.+ .|.|..+|++.. ++...++. ..+|.| |-+|+.|+..
T Consensus 85 ~VVV~Fya~w------c~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-----~l~~~f~v--~~vPTlllyk~G~~v~~~ 151 (175)
T cd02987 85 TVVVHIYEPG------IPGCAALNSSLLCLAAEYPAVKFCKIRASAT-----GASDEFDT--DALPALLVYKGGELIGNF 151 (175)
T ss_pred EEEEEEECCC------CchHHHHHHHHHHHHHHCCCeEEEEEeccch-----hhHHhCCC--CCCCEEEEEECCEEEEEE
Confidence 566654 455 57999888777653 477888888742 56666654 789976 5699877533
No 133
>PRK10767 chaperone protein DnaJ; Provisional
Probab=90.44 E-value=0.28 Score=47.57 Aligned_cols=50 Identities=26% Similarity=0.601 Sum_probs=34.6
Q ss_pred CCCCCCCCccc------eEeCCCCCCcceeeeCCCC--cceeCCCCCcCcee---eCCCCC
Q 048504 226 GFVCGSCGDVR------FVPCGNCSGSRKVFDEADG--VPKRCLECNENGLI---RCPDCC 275 (277)
Q Consensus 226 ~~~C~~CGg~r------fVpC~~C~GS~Kv~~~~~~--~~~rC~~CNEnGLv---rCp~C~ 275 (277)
...|..|.|.+ ...|+.|+|+-++....+. ....|+.|+-.|.+ +|+.|.
T Consensus 142 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 202 (371)
T PRK10767 142 LVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCH 202 (371)
T ss_pred cccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECCCCCCCCC
Confidence 35788887765 3579999998776543211 24579999888876 688885
No 134
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.42 E-value=1.7 Score=40.40 Aligned_cols=71 Identities=8% Similarity=-0.049 Sum_probs=50.7
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHH
Q 048504 129 DRIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSM 207 (277)
Q Consensus 129 ~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L 207 (277)
+.|.||..- .||+-++|+..|+.+||+|+.++++-.. --+-|.+..-- ...+|.+-.||+.|+-.-.+.+.
T Consensus 8 ~~vrL~~~w------~sPfa~R~~iaL~~KgI~yE~veedl~~-Ks~~ll~~np~-hkKVPvL~Hn~k~i~ESliiveY 78 (231)
T KOG0406|consen 8 GTVKLLGMW------FSPFAQRVRIALKLKGIPYEYVEEDLTN-KSEWLLEKNPV-HKKVPVLEHNGKPICESLIIVEY 78 (231)
T ss_pred CeEEEEEee------cChHHHHHHHHHHhcCCceEEEecCCCC-CCHHHHHhccc-cccCCEEEECCceehhhHHHHHH
Confidence 679999986 4699999999999999998877665431 01223333311 26799999999997765555443
No 135
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=90.42 E-value=0.29 Score=36.27 Aligned_cols=41 Identities=27% Similarity=0.601 Sum_probs=24.4
Q ss_pred cceEeCCCCCCcceeeeCC------CCcceeCCCCCcCceee----CCCCC
Q 048504 235 VRFVPCGNCSGSRKVFDEA------DGVPKRCLECNENGLIR----CPDCC 275 (277)
Q Consensus 235 ~rfVpC~~C~GS~Kv~~~~------~~~~~rC~~CNEnGLvr----Cp~C~ 275 (277)
.....|+.|+|+-.++... ......|+.|+-.|.+. |+.|.
T Consensus 13 ~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~ 63 (66)
T PF00684_consen 13 KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCK 63 (66)
T ss_dssp TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSST
T ss_pred CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCC
Confidence 4456788888887764322 11367888888888875 77774
No 136
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=90.15 E-value=1.1 Score=36.28 Aligned_cols=62 Identities=24% Similarity=0.347 Sum_probs=40.1
Q ss_pred CcEEE-EEecCCCCCCCChhHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE-E-eCC----E
Q 048504 129 DRIVV-YLTSLRGIRRTFEDCYAVRMIFRGF-----RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQV-F-IRG----K 196 (277)
Q Consensus 129 ~kVVL-YttSlcgiR~Tc~~C~~Vk~iL~~~-----gV~y~ErDVs~d~~~reELke~lG~~~~tvPqV-F-I~G----~ 196 (277)
..||| |+++|| +.|+.+.=+|+.+ .+.|..+|++. -.++.+..+- ..+|.+ | -+| +
T Consensus 22 kliVvdF~a~wC------gPCk~i~P~~~~La~~y~~v~Flkvdvde----~~~~~~~~~V--~~~PTf~f~k~g~~~~~ 89 (106)
T KOG0907|consen 22 KLVVVDFYATWC------GPCKAIAPKFEKLAEKYPDVVFLKVDVDE----LEEVAKEFNV--KAMPTFVFYKGGEEVDE 89 (106)
T ss_pred CeEEEEEECCCC------cchhhhhhHHHHHHHHCCCCEEEEEeccc----CHhHHHhcCc--eEeeEEEEEECCEEEEE
Confidence 34455 666776 5999999888874 46678899987 2344444443 788987 3 355 4
Q ss_pred EEechh
Q 048504 197 HVGNAD 202 (277)
Q Consensus 197 ~IGG~d 202 (277)
++|.-.
T Consensus 90 ~vGa~~ 95 (106)
T KOG0907|consen 90 VVGANK 95 (106)
T ss_pred EecCCH
Confidence 455543
No 137
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=89.92 E-value=1.9 Score=35.76 Aligned_cols=62 Identities=8% Similarity=0.043 Sum_probs=45.1
Q ss_pred CCcEEEEEecCCCCCCCCh-hHH----------HHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE--EeC
Q 048504 128 EDRIVVYLTSLRGIRRTFE-DCY----------AVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQV--FIR 194 (277)
Q Consensus 128 ~~kVVLYttSlcgiR~Tc~-~C~----------~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqV--FI~ 194 (277)
...||+|+.++|+ +| .|+ .+..+|+..+|.+-.+|++.++ +|.+..|- ..+|.+ |-|
T Consensus 27 ~~~vvv~f~a~wc----~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~----~La~~~~I--~~iPTl~lfk~ 96 (120)
T cd03065 27 DVLCLLYHEPVES----DKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDA----KVAKKLGL--DEEDSIYVFKD 96 (120)
T ss_pred CceEEEEECCCcC----ChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCH----HHHHHcCC--ccccEEEEEEC
Confidence 3468888888873 23 475 4556666778999999999885 56666765 788887 779
Q ss_pred CEEEe
Q 048504 195 GKHVG 199 (277)
Q Consensus 195 G~~IG 199 (277)
|+.+.
T Consensus 97 G~~v~ 101 (120)
T cd03065 97 DEVIE 101 (120)
T ss_pred CEEEE
Confidence 98653
No 138
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=89.82 E-value=2.4 Score=31.82 Aligned_cols=56 Identities=18% Similarity=0.267 Sum_probs=37.5
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHh------CCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE--EeCCEEE
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRG------FRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQV--FIRGKHV 198 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~------~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqV--FI~G~~I 198 (277)
||.|..++ |..|+++...|+. ..+.+..+|++..+ ++.+.++- ..+|.+ |.+|+.+
T Consensus 18 ~v~f~~~~------C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~----~~~~~~~i--~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPW------AEPCKQMNQVFEELAKEAFPSVLFLSIEAEELP----EISEKFEI--TAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCC------CHHHHHHhHHHHHHHHHhCCceEEEEEccccCH----HHHHhcCC--ccccEEEEEECCEEE
Confidence 45566665 5799999888875 25677778877654 45555654 678966 5577644
No 139
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=89.81 E-value=1.8 Score=33.11 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=35.5
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHh----C--CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE--EeCC
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRG----F--RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQV--FIRG 195 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~----~--gV~y~ErDVs~d~~~reELke~lG~~~~tvPqV--FI~G 195 (277)
||.|+++|| +.|+.+...|+. + .+.+..+|++.+++ +.+..|- ..+|.+ |-+|
T Consensus 23 ~v~f~a~wC------~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~i--~~~Pt~~~~~~g 83 (104)
T cd03004 23 LVDFYAPWC------GPCQALLPELRKAARALKGKVKVGSVDCQKYES----LCQQANI--RAYPTIRLYPGN 83 (104)
T ss_pred EEEEECCCC------HHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH----HHHHcCC--CcccEEEEEcCC
Confidence 556667765 799987766653 2 47788899887643 4455554 788987 3455
No 140
>PRK14287 chaperone protein DnaJ; Provisional
Probab=89.77 E-value=0.31 Score=47.43 Aligned_cols=49 Identities=31% Similarity=0.767 Sum_probs=34.9
Q ss_pred CCCCCCCccc------eEeCCCCCCcceeeeCCC---C---cceeCCCCCcCcee---eCCCCC
Q 048504 227 FVCGSCGDVR------FVPCGNCSGSRKVFDEAD---G---VPKRCLECNENGLI---RCPDCC 275 (277)
Q Consensus 227 ~~C~~CGg~r------fVpC~~C~GS~Kv~~~~~---~---~~~rC~~CNEnGLv---rCp~C~ 275 (277)
..|..|.|.+ -..|+.|+|+-.+..... + ....|+.|+-.|.+ +|+.|.
T Consensus 139 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 202 (371)
T PRK14287 139 ETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCG 202 (371)
T ss_pred ccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCC
Confidence 5788887655 467999999977654321 1 24689999999976 588885
No 141
>PRK14290 chaperone protein DnaJ; Provisional
Probab=89.34 E-value=0.35 Score=46.86 Aligned_cols=49 Identities=27% Similarity=0.721 Sum_probs=32.8
Q ss_pred CCCCCCCccce-----EeCCCCCCcceeeeCCC-Cc-----ceeCCCCCcCcee---eCCCCC
Q 048504 227 FVCGSCGDVRF-----VPCGNCSGSRKVFDEAD-GV-----PKRCLECNENGLI---RCPDCC 275 (277)
Q Consensus 227 ~~C~~CGg~rf-----VpC~~C~GS~Kv~~~~~-~~-----~~rC~~CNEnGLv---rCp~C~ 275 (277)
..|..|.|.+. ..|+.|+|+-.+..... +. ..+|+.|+-.|-+ +|+.|.
T Consensus 150 ~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~ 212 (365)
T PRK14290 150 AMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCN 212 (365)
T ss_pred ccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCC
Confidence 56777766554 56999999876643321 11 2579999888844 688884
No 142
>PRK14300 chaperone protein DnaJ; Provisional
Probab=89.30 E-value=0.36 Score=46.93 Aligned_cols=49 Identities=27% Similarity=0.670 Sum_probs=35.0
Q ss_pred CCCCCCCccc------eEeCCCCCCcceeeeCCCC--cceeCCCCCcCcee---eCCCCC
Q 048504 227 FVCGSCGDVR------FVPCGNCSGSRKVFDEADG--VPKRCLECNENGLI---RCPDCC 275 (277)
Q Consensus 227 ~~C~~CGg~r------fVpC~~C~GS~Kv~~~~~~--~~~rC~~CNEnGLv---rCp~C~ 275 (277)
..|..|.|.+ ...|+.|+|+-+++...+. ....|+.|+-.|-+ +|+.|.
T Consensus 146 ~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 205 (372)
T PRK14300 146 VKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIKNPCKKCH 205 (372)
T ss_pred cccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeCCCCCCCC
Confidence 5677777654 5779999999776543211 24689999999966 688885
No 143
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=89.19 E-value=1.9 Score=37.55 Aligned_cols=67 Identities=9% Similarity=0.155 Sum_probs=45.7
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCC--HHHHHHHHHHhCCCCCCCcEEEe-----CC--EEEech
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMD--SAYKKELQCVFGGKNVTLPQVFI-----RG--KHVGNA 201 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d--~~~reELke~lG~~~~tvPqVFI-----~G--~~IGG~ 201 (277)
+.||... + +.|.+|+.+|+.+||+|+.++|+.. .....++.++.-. ..+|.+.. || ..|-..
T Consensus 2 ~~Ly~~~-~------~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~--gkVP~L~~~~~~d~g~~~~L~ES 72 (215)
T PRK13972 2 IDLYFAP-T------PNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPN--NKIPAIVDHSPADGGEPLSLFES 72 (215)
T ss_pred eEEEECC-C------CChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcC--CCCCEEEeCCCCCCCCceeEEcH
Confidence 4678764 2 6899999999999999988777643 2233567777643 68999976 34 235544
Q ss_pred hHHHH
Q 048504 202 DVLKS 206 (277)
Q Consensus 202 del~~ 206 (277)
..+.+
T Consensus 73 ~AI~~ 77 (215)
T PRK13972 73 GAILL 77 (215)
T ss_pred HHHHH
Confidence 44444
No 144
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=88.72 E-value=3.4 Score=34.59 Aligned_cols=79 Identities=11% Similarity=0.117 Sum_probs=44.8
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhC------CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEE-e--CCEEE---
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGF------RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVF-I--RGKHV--- 198 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~------gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVF-I--~G~~I--- 198 (277)
||.|.++| |+.|+.....|..+ .+.|..+|++.+. + .++.+.++- ..+|.++ + +|+.+
T Consensus 24 vV~F~A~W------C~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~-~~~~~~~~V--~~iPt~v~~~~~G~~v~~~ 93 (142)
T cd02950 24 LVEFYADW------CTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-W-LPEIDRYRV--DGIPHFVFLDREGNEEGQS 93 (142)
T ss_pred EEEEECCc------CHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-c-HHHHHHcCC--CCCCEEEEECCCCCEEEEE
Confidence 44555666 47999888777642 3667778876542 1 234455554 6899874 5 46544
Q ss_pred echhHHHHHHhhccHHHHhcCCC
Q 048504 199 GNADVLKSMYETGELARVLDGFP 221 (277)
Q Consensus 199 GG~del~~L~EsGeL~klL~~~~ 221 (277)
.|+..-.+|. ..|++++++.+
T Consensus 94 ~G~~~~~~l~--~~l~~l~~~~~ 114 (142)
T cd02950 94 IGLQPKQVLA--QNLDALVAGEP 114 (142)
T ss_pred eCCCCHHHHH--HHHHHHHcCCC
Confidence 2333222232 23666666543
No 145
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=88.62 E-value=2.2 Score=36.72 Aligned_cols=59 Identities=20% Similarity=0.369 Sum_probs=39.5
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHh-------CCCeEEEEECCCCHHHHHHHHHHhCCC----CCCCcEE--EeCCEE
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRG-------FRVWVDERDVSMDSAYKKELQCVFGGK----NVTLPQV--FIRGKH 197 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~-------~gV~y~ErDVs~d~~~reELke~lG~~----~~tvPqV--FI~G~~ 197 (277)
||.|.++|| +.|+.+...|+. .++.+..+|++.+++..++ .+-. ...+|.+ |.+|+.
T Consensus 51 vV~Fya~wC------~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~----~~V~~~~~v~~~PT~ilf~~Gk~ 120 (152)
T cd02962 51 LVEFFTTWS------PECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEK----FRVSTSPLSKQLPTIILFQGGKE 120 (152)
T ss_pred EEEEECCCC------HHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHH----cCceecCCcCCCCEEEEEECCEE
Confidence 667777765 799988877653 2488899999888754433 3321 1238876 678876
Q ss_pred Ee
Q 048504 198 VG 199 (277)
Q Consensus 198 IG 199 (277)
++
T Consensus 121 v~ 122 (152)
T cd02962 121 VA 122 (152)
T ss_pred EE
Confidence 64
No 146
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=88.56 E-value=3.3 Score=31.28 Aligned_cols=61 Identities=10% Similarity=0.127 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHhCCCeEEEEECCCCH-H-H-HHHHH-HH--hCCCCCCCcEEEeCCEEEechhHHHH
Q 048504 146 EDCYAVRMIFRGFRVWVDERDVSMDS-A-Y-KKELQ-CV--FGGKNVTLPQVFIRGKHVGNADVLKS 206 (277)
Q Consensus 146 ~~C~~Vk~iL~~~gV~y~ErDVs~d~-~-~-reELk-e~--lG~~~~tvPqVFI~G~~IGG~del~~ 206 (277)
..|.+++.+|...||+|+.+.|+... + . .++.. .. ++....++|.+..||..+.-...+..
T Consensus 10 ~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~ 76 (82)
T cd03075 10 GLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILR 76 (82)
T ss_pred cccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHH
Confidence 47899999999999999887776432 1 1 11211 11 12123689999988877766555554
No 147
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.38 E-value=1.3 Score=38.39 Aligned_cols=67 Identities=9% Similarity=0.017 Sum_probs=47.8
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCH-HHHHHHHHHhCCCCCCCcEEEeCCE-EEechhHHHH
Q 048504 132 VVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDS-AYKKELQCVFGGKNVTLPQVFIRGK-HVGNADVLKS 206 (277)
Q Consensus 132 VLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~-~~reELke~lG~~~~tvPqVFI~G~-~IGG~del~~ 206 (277)
.+|.... .++|.+|+-+|..+|++|+.+.|+... ....++..+... ..||.+-.+|- .|-....|.+
T Consensus 2 ~L~~~~~------sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~--gkVPvL~~~~~~~l~ES~AI~~ 70 (211)
T COG0625 2 KLYGSPT------SPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPL--GKVPALVDDDGEVLTESGAILE 70 (211)
T ss_pred eeecCCC------CcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCC--CCCCEEeeCCCCeeecHHHHHH
Confidence 4566654 279999999999999999988887764 444666777644 68999987764 4444444433
No 148
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=88.24 E-value=2 Score=32.09 Aligned_cols=52 Identities=13% Similarity=0.275 Sum_probs=34.8
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHh-------C-CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEe
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRG-------F-RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFI 193 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~-------~-gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI 193 (277)
-|++|++++| +.|+.+...|+. . ++.+..+|++.++ ++.+.++- ..+|.+++
T Consensus 16 ~~i~f~~~~C------~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~~i--~~~P~~~~ 75 (102)
T TIGR01126 16 VLVEFYAPWC------GHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEK----DLASRFGV--SGFPTIKF 75 (102)
T ss_pred EEEEEECCCC------HHHHhhChHHHHHHHHhccCCceEEEEEEccchH----HHHHhCCC--CcCCEEEE
Confidence 4777777765 799876666643 2 3777888887664 34455654 78998843
No 149
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=88.09 E-value=2 Score=33.37 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=37.2
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhC------------CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEE--eCCE
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGF------------RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVF--IRGK 196 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~------------gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVF--I~G~ 196 (277)
+|.|.++|| +.|++....|+.. .+.|-.+|.+.+. +|.+.+|- .++|.++ -+|+
T Consensus 22 lv~F~a~wC------~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~----~l~~~~~v--~~~Ptl~~~~~g~ 89 (108)
T cd02996 22 LVNFYADWC------RFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES----DIADRYRI--NKYPTLKLFRNGM 89 (108)
T ss_pred EEEEECCCC------HHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH----HHHHhCCC--CcCCEEEEEeCCc
Confidence 556667765 7999888777521 3677888888764 45566665 7899884 4554
No 150
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=87.96 E-value=2.5 Score=31.76 Aligned_cols=56 Identities=14% Similarity=0.294 Sum_probs=37.3
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHh----C--CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEE--eCCEEE
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRG----F--RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVF--IRGKHV 198 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~----~--gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVF--I~G~~I 198 (277)
||.|.++| |+.|+.+...|+. + .+.+..+|++.+. +|.+.++- ..+|.++ -+|+.+
T Consensus 16 lv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~l~~~~~i--~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 16 VVDFWAPR------SPPSKELLPLLERLAEEYQGQFVLAKVNCDAQP----QIAQQFGV--QALPTVYLFAAGQPV 79 (96)
T ss_pred EEEEECCC------ChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCH----HHHHHcCC--CCCCEEEEEeCCEEe
Confidence 55566666 4799988777764 2 3556788887764 45555654 7899885 466544
No 151
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=87.92 E-value=0.41 Score=46.73 Aligned_cols=21 Identities=33% Similarity=0.680 Sum_probs=13.9
Q ss_pred CCCCCCCccceEeCCCCCCcc
Q 048504 227 FVCGSCGDVRFVPCGNCSGSR 247 (277)
Q Consensus 227 ~~C~~CGg~rfVpC~~C~GS~ 247 (277)
..|.+|-|.+-+.|+.|+|+-
T Consensus 188 ~~ch~c~gRG~~vc~gc~g~G 208 (406)
T KOG2813|consen 188 TFCHACLGRGAMVCHGCSGSG 208 (406)
T ss_pred hhhhcccCCCceeccCcCCCC
Confidence 356667666666777776664
No 152
>PRK10357 putative glutathione S-transferase; Provisional
Probab=87.87 E-value=1.5 Score=37.56 Aligned_cols=65 Identities=5% Similarity=-0.084 Sum_probs=43.9
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEe-CCEEEechhHHH
Q 048504 132 VVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFI-RGKHVGNADVLK 205 (277)
Q Consensus 132 VLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI-~G~~IGG~del~ 205 (277)
.||+... ++++++|+.+|+.+||+|+.++++.... ..++.+.... .++|.+.. +|..+-....+.
T Consensus 2 ~Ly~~~~------s~~~~~v~~~L~~~gv~ye~~~~~~~~~-~~~~~~~nP~--g~vP~L~~~~g~~l~eS~aI~ 67 (202)
T PRK10357 2 KLIGSYT------SPFVRKISILLLEKGITFEFVNELPYNA-DNGVAQYNPL--GKVPALVTEEGECWFDSPIIA 67 (202)
T ss_pred eeecCCC------CchHHHHHHHHHHcCCCCeEEecCCCCC-chhhhhcCCc--cCCCeEEeCCCCeeecHHHHH
Confidence 4677754 4799999999999999999887765321 1244444433 68999985 565554444443
No 153
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=87.77 E-value=6.5 Score=29.41 Aligned_cols=61 Identities=11% Similarity=0.138 Sum_probs=45.2
Q ss_pred CCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHHHh
Q 048504 139 RGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSMYE 209 (277)
Q Consensus 139 cgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L~E 209 (277)
-|+.-..|+|-++..+|+-.+++|+.+... ++. ... ...+|.|..+|+.|+|.+.+.+..+
T Consensus 10 ~g~ps~sp~clk~~~~Lr~~~~~~~v~~~~-n~~-------~sp--~gkLP~l~~~~~~i~d~~~Ii~~L~ 70 (73)
T cd03078 10 WGLPSVDPECLAVLAYLKFAGAPLKVVPSN-NPW-------RSP--TGKLPALLTSGTKISGPEKIIEYLR 70 (73)
T ss_pred CCCCcCCHHHHHHHHHHHcCCCCEEEEecC-CCC-------CCC--CCccCEEEECCEEecChHHHHHHHH
Confidence 355566699999999999999999665333 221 011 2469999999999999998887543
No 154
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=87.71 E-value=2.8 Score=30.56 Aligned_cols=51 Identities=18% Similarity=0.331 Sum_probs=33.2
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHh----C----CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEE
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRG----F----RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVF 192 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~----~----gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVF 192 (277)
-|++|++++ |+.|+.+...|+. + ++.+..+|.+.+. ++.+.++- ..+|.++
T Consensus 18 ~~v~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~i--~~~Pt~~ 76 (101)
T cd02961 18 VLVEFYAPW------CGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANN----DLCSEYGV--RGYPTIK 76 (101)
T ss_pred EEEEEECCC------CHHHHhhhHHHHHHHHHhccCCceEEEEeeccchH----HHHHhCCC--CCCCEEE
Confidence 355566654 5799988777754 3 4566777776543 45555654 6899884
No 155
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=87.19 E-value=0.58 Score=44.95 Aligned_cols=49 Identities=24% Similarity=0.622 Sum_probs=31.5
Q ss_pred CCCCCCCccc------eEeCCCCCCcceeeeCCC------CcceeCCCCCcCcee---eCCCCC
Q 048504 227 FVCGSCGDVR------FVPCGNCSGSRKVFDEAD------GVPKRCLECNENGLI---RCPDCC 275 (277)
Q Consensus 227 ~~C~~CGg~r------fVpC~~C~GS~Kv~~~~~------~~~~rC~~CNEnGLv---rCp~C~ 275 (277)
..|..|.|.+ ...|+.|+|.-.+..... .....|+.|+-.|.+ .|+.|.
T Consensus 144 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 207 (354)
T TIGR02349 144 ESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCK 207 (354)
T ss_pred CcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCC
Confidence 5677777665 456888888866543211 013578888888765 477774
No 156
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=87.18 E-value=2.6 Score=32.10 Aligned_cols=55 Identities=16% Similarity=0.317 Sum_probs=38.3
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHh-------CCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEe--CCE
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRG-------FRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFI--RGK 196 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~-------~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI--~G~ 196 (277)
-+|.|..+|| +.|+.+...|+. .+|.+..+|++.++. +.+.++- ..+|.+++ +|+
T Consensus 19 ~lv~f~a~wC------~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~----~~~~~~i--~~~Pt~~~~~~g~ 82 (101)
T cd02994 19 WMIEFYAPWC------PACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG----LSGRFFV--TALPTIYHAKDGV 82 (101)
T ss_pred EEEEEECCCC------HHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh----HHHHcCC--cccCEEEEeCCCC
Confidence 5777788775 799988777753 357778888887654 4444543 78898864 553
No 157
>PRK14284 chaperone protein DnaJ; Provisional
Probab=87.05 E-value=0.63 Score=45.60 Aligned_cols=50 Identities=26% Similarity=0.650 Sum_probs=32.4
Q ss_pred CCCCCCCCccce------EeCCCCCCcceeeeCCC--CcceeCCCCCcCcee---eCCCCC
Q 048504 226 GFVCGSCGDVRF------VPCGNCSGSRKVFDEAD--GVPKRCLECNENGLI---RCPDCC 275 (277)
Q Consensus 226 ~~~C~~CGg~rf------VpC~~C~GS~Kv~~~~~--~~~~rC~~CNEnGLv---rCp~C~ 275 (277)
...|..|.|.+. ..|+.|+|+-.++...+ .....|+.|+-.|.+ .|+.|.
T Consensus 158 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 218 (391)
T PRK14284 158 YKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVITDPCSVCR 218 (391)
T ss_pred eccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccCCcCCCCC
Confidence 357777766543 56888888866543221 124688888888865 577774
No 158
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=87.02 E-value=5.7 Score=34.64 Aligned_cols=74 Identities=15% Similarity=0.113 Sum_probs=54.5
Q ss_pred CCcEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCC--CCCCcEEEeCCEEEech---h
Q 048504 128 EDRIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGK--NVTLPQVFIRGKHVGNA---D 202 (277)
Q Consensus 128 ~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~--~~tvPqVFI~G~~IGG~---d 202 (277)
.-++++|..+.|| =|+.--+.|+..|+.+...+.+. +..|++++|-+ -.+==+..|||.||-|. +
T Consensus 25 ~~~~~vyksPnCG------CC~~w~~~mk~~Gf~Vk~~~~~d----~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~ 94 (149)
T COG3019 25 ATEMVVYKSPNCG------CCDEWAQHMKANGFEVKVVETDD----FLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAE 94 (149)
T ss_pred eeeEEEEeCCCCc------cHHHHHHHHHhCCcEEEEeecCc----HHHHHHhcCCChhhccccEEEEcCEEEeccCCHH
Confidence 4469999999876 79999999999999988877653 45677777742 14456789999999886 4
Q ss_pred HHHHHHhhc
Q 048504 203 VLKSMYETG 211 (277)
Q Consensus 203 el~~L~EsG 211 (277)
++.+|.+++
T Consensus 95 aI~~ll~~~ 103 (149)
T COG3019 95 AIARLLAEK 103 (149)
T ss_pred HHHHHHhCC
Confidence 444444443
No 159
>PRK14286 chaperone protein DnaJ; Provisional
Probab=86.90 E-value=0.59 Score=45.54 Aligned_cols=49 Identities=24% Similarity=0.623 Sum_probs=30.5
Q ss_pred CCCCCCCccce------EeCCCCCCcceeeeCCCC--cceeCCCCCcCcee---eCCCCC
Q 048504 227 FVCGSCGDVRF------VPCGNCSGSRKVFDEADG--VPKRCLECNENGLI---RCPDCC 275 (277)
Q Consensus 227 ~~C~~CGg~rf------VpC~~C~GS~Kv~~~~~~--~~~rC~~CNEnGLv---rCp~C~ 275 (277)
..|..|.|.+. ..|+.|+|+-.+....+. ....|+.|+--|.+ +|+.|.
T Consensus 151 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 210 (372)
T PRK14286 151 ESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCKTCG 210 (372)
T ss_pred ccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEecccCCCCC
Confidence 46777777653 568888888665432211 24578888777754 577764
No 160
>PRK14285 chaperone protein DnaJ; Provisional
Probab=86.84 E-value=0.68 Score=45.00 Aligned_cols=49 Identities=33% Similarity=0.713 Sum_probs=31.8
Q ss_pred CCCCCCCccc------eEeCCCCCCcceeeeCCCC--cceeCCCCCcCcee---eCCCCC
Q 048504 227 FVCGSCGDVR------FVPCGNCSGSRKVFDEADG--VPKRCLECNENGLI---RCPDCC 275 (277)
Q Consensus 227 ~~C~~CGg~r------fVpC~~C~GS~Kv~~~~~~--~~~rC~~CNEnGLv---rCp~C~ 275 (277)
..|..|.|.+ -..|+.|+|+-.+....+. ....|+.|+-.|-+ +|+.|.
T Consensus 147 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 206 (365)
T PRK14285 147 MLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIISNPCKSCK 206 (365)
T ss_pred ccCCCCCCcccCCCCCCccCCCccCceeEEecCceeEEeeecCCCCCcccccCCCCCCCC
Confidence 4677776665 3568888888766542211 24578888888855 577774
No 161
>PRK14298 chaperone protein DnaJ; Provisional
Probab=86.80 E-value=0.62 Score=45.50 Aligned_cols=49 Identities=24% Similarity=0.672 Sum_probs=33.3
Q ss_pred CCCCCCCccce------EeCCCCCCcceeeeCCC------CcceeCCCCCcCcee---eCCCCC
Q 048504 227 FVCGSCGDVRF------VPCGNCSGSRKVFDEAD------GVPKRCLECNENGLI---RCPDCC 275 (277)
Q Consensus 227 ~~C~~CGg~rf------VpC~~C~GS~Kv~~~~~------~~~~rC~~CNEnGLv---rCp~C~ 275 (277)
..|..|.|.+. ..|+.|+|+-.+..... .....|+.|+-.|-+ +|+.|.
T Consensus 142 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 205 (377)
T PRK14298 142 ERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCS 205 (377)
T ss_pred ccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCC
Confidence 57888877654 56999999876643211 125678888888854 688774
No 162
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=86.69 E-value=2.7 Score=32.12 Aligned_cols=54 Identities=17% Similarity=0.290 Sum_probs=36.2
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhC------CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEE--eCCE
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGF------RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVF--IRGK 196 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~------gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVF--I~G~ 196 (277)
+|.|+++|| +.|+.+...|+.. .+.+..+|++.++. +.+..+- ..+|.++ -+|+
T Consensus 22 ~v~f~a~wC------~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~----~~~~~~v--~~~Pt~~~~~~g~ 83 (101)
T cd03003 22 FVNFYSPRC------SHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM----LCRSQGV--NSYPSLYVFPSGM 83 (101)
T ss_pred EEEEECCCC------hHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH----HHHHcCC--CccCEEEEEcCCC
Confidence 556667665 7999888887642 35677888887654 4444543 6889884 4665
No 163
>PRK14289 chaperone protein DnaJ; Provisional
Probab=86.66 E-value=0.57 Score=45.71 Aligned_cols=49 Identities=29% Similarity=0.686 Sum_probs=34.1
Q ss_pred CCCCCCCccc------eEeCCCCCCcceeeeCCC------CcceeCCCCCcCcee---eCCCCC
Q 048504 227 FVCGSCGDVR------FVPCGNCSGSRKVFDEAD------GVPKRCLECNENGLI---RCPDCC 275 (277)
Q Consensus 227 ~~C~~CGg~r------fVpC~~C~GS~Kv~~~~~------~~~~rC~~CNEnGLv---rCp~C~ 275 (277)
..|..|.|.+ ...|+.|+|+-+++.... .....|+.|+-.|-+ +|+.|.
T Consensus 155 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 218 (386)
T PRK14289 155 VPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCG 218 (386)
T ss_pred cccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCC
Confidence 5788886655 467999999977653211 125689999888865 788884
No 164
>PRK14282 chaperone protein DnaJ; Provisional
Probab=86.59 E-value=0.65 Score=45.09 Aligned_cols=49 Identities=29% Similarity=0.763 Sum_probs=32.8
Q ss_pred CCCCCCCccc------eEeCCCCCCcceeeeCC------CCcceeCCCCCcCcee---eCCCCC
Q 048504 227 FVCGSCGDVR------FVPCGNCSGSRKVFDEA------DGVPKRCLECNENGLI---RCPDCC 275 (277)
Q Consensus 227 ~~C~~CGg~r------fVpC~~C~GS~Kv~~~~------~~~~~rC~~CNEnGLv---rCp~C~ 275 (277)
..|..|.|.+ ...|+.|+|+-.+.... ......|+.|+-.|.+ +|+.|.
T Consensus 153 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 216 (369)
T PRK14282 153 ETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECG 216 (369)
T ss_pred ccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCC
Confidence 4677777654 45699999987664321 0125688888888865 577774
No 165
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=86.47 E-value=3.1 Score=35.07 Aligned_cols=76 Identities=16% Similarity=0.147 Sum_probs=41.7
Q ss_pred CcEEEEEecCCCCCCCCh---h-----HHHHHHHHHhCCCeEEEEECCCCHHHHH------HHHHHhCCCCCCCcEEEeC
Q 048504 129 DRIVVYLTSLRGIRRTFE---D-----CYAVRMIFRGFRVWVDERDVSMDSAYKK------ELQCVFGGKNVTLPQVFIR 194 (277)
Q Consensus 129 ~kVVLYttSlcgiR~Tc~---~-----C~~Vk~iL~~~gV~y~ErDVs~d~~~re------ELke~lG~~~~tvPqVFI~ 194 (277)
.+|.||--.+|=..-.|- + =..+-..|+..||.+.-..+..++.... ++.+..|. ..+|.++||
T Consensus 2 ~~i~ifepamCC~tGvCG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~--e~LPitlVd 79 (123)
T PF06953_consen 2 KKIEIFEPAMCCSTGVCGPSVDPELVRFAADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGA--EALPITLVD 79 (123)
T ss_dssp -EEEEEE-S-SSTTS-SSSS--HHHHHHHHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-G--GG-SEEEET
T ss_pred CceEEeccccccccCccCCCCCHHHHHHHHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCc--ccCCEEEEC
Confidence 456677666542222231 1 2255667788999999999999875432 22222354 689999999
Q ss_pred CEEE--echhHHHH
Q 048504 195 GKHV--GNADVLKS 206 (277)
Q Consensus 195 G~~I--GG~del~~ 206 (277)
|+.+ |.|=...+
T Consensus 80 Geiv~~G~YPt~eE 93 (123)
T PF06953_consen 80 GEIVKTGRYPTNEE 93 (123)
T ss_dssp TEEEEESS---HHH
T ss_pred CEEEEecCCCCHHH
Confidence 9976 77755444
No 166
>PRK14294 chaperone protein DnaJ; Provisional
Probab=86.47 E-value=0.71 Score=44.80 Aligned_cols=49 Identities=24% Similarity=0.624 Sum_probs=32.2
Q ss_pred CCCCCCCccce------EeCCCCCCcceeeeCCCC--cceeCCCCCcCcee---eCCCCC
Q 048504 227 FVCGSCGDVRF------VPCGNCSGSRKVFDEADG--VPKRCLECNENGLI---RCPDCC 275 (277)
Q Consensus 227 ~~C~~CGg~rf------VpC~~C~GS~Kv~~~~~~--~~~rC~~CNEnGLv---rCp~C~ 275 (277)
..|..|.|.+. ..|+.|+|.-.+....+. ....|+.|+-.|.+ .|+.|.
T Consensus 145 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 204 (366)
T PRK14294 145 ETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSPCKTCH 204 (366)
T ss_pred ccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecCcCCCCCC
Confidence 46777776553 568888888765432211 25678888888865 677774
No 167
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=86.00 E-value=5.2 Score=31.68 Aligned_cols=56 Identities=13% Similarity=0.314 Sum_probs=37.3
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHH-------hCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEE--eCCEEE
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFR-------GFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVF--IRGKHV 198 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~-------~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVF--I~G~~I 198 (277)
||.|.++|| +.|+....+|+ ..++.+..+|++.++. +.+..|- .++|.++ .+|+.+
T Consensus 28 lV~F~a~wC------~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~----l~~~~~V--~~~Pt~~i~~~g~~~ 92 (111)
T cd02963 28 LIKITSDWC------FSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR----LARKLGA--HSVPAIVGIINGQVT 92 (111)
T ss_pred EEEEECCcc------HhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH----HHHHcCC--ccCCEEEEEECCEEE
Confidence 556677765 79986665543 2357888888887643 4455554 7899874 688755
No 168
>PRK14296 chaperone protein DnaJ; Provisional
Probab=85.94 E-value=0.72 Score=44.98 Aligned_cols=49 Identities=31% Similarity=0.735 Sum_probs=32.7
Q ss_pred CCCCCCCccce------EeCCCCCCcceeeeCCC-C-----cceeCCCCCcCcee---eCCCCC
Q 048504 227 FVCGSCGDVRF------VPCGNCSGSRKVFDEAD-G-----VPKRCLECNENGLI---RCPDCC 275 (277)
Q Consensus 227 ~~C~~CGg~rf------VpC~~C~GS~Kv~~~~~-~-----~~~rC~~CNEnGLv---rCp~C~ 275 (277)
..|..|.|.+. ..|+.|+|+-.+..... + ....|+.|+--|-+ .|+.|.
T Consensus 150 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~ 213 (372)
T PRK14296 150 TNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCK 213 (372)
T ss_pred eccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCC
Confidence 46777877654 45999999876643221 1 13578888888865 488774
No 169
>PRK14295 chaperone protein DnaJ; Provisional
Probab=85.77 E-value=0.73 Score=45.19 Aligned_cols=49 Identities=31% Similarity=0.737 Sum_probs=31.5
Q ss_pred CCCCCCCccce------EeCCCCCCcceeeeCCCC--cceeCCCCCcCcee---eCCCCC
Q 048504 227 FVCGSCGDVRF------VPCGNCSGSRKVFDEADG--VPKRCLECNENGLI---RCPDCC 275 (277)
Q Consensus 227 ~~C~~CGg~rf------VpC~~C~GS~Kv~~~~~~--~~~rC~~CNEnGLv---rCp~C~ 275 (277)
..|..|.|.+. ..|+.|+|+-.+.....+ ...+|+.|+-.|.+ +|+.|.
T Consensus 167 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 226 (389)
T PRK14295 167 APCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDPCLVCK 226 (389)
T ss_pred ccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEeccCCCCCC
Confidence 46777766543 568888888665443211 24678888888865 477774
No 170
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=85.67 E-value=1.5 Score=35.56 Aligned_cols=60 Identities=15% Similarity=0.209 Sum_probs=35.4
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHh------CCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE-Ee--CCEEEe
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRG------FRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQV-FI--RGKHVG 199 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~------~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqV-FI--~G~~IG 199 (277)
+|.|+++|| ++|+.....+.. ....|..+|++.+.+... +..+.....+|.+ |+ +|+.++
T Consensus 23 lV~F~a~WC------~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~---~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 23 MLLIHKTWC------GACKALKPKFAESKEISELSHNFVMVNLEDDEEPKD---EEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEEEeCCcC------HHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchh---hhcccCCCccceEEEECCCCCCch
Confidence 444666665 799988777766 345688888887643221 2232211348988 45 455433
No 171
>PRK14291 chaperone protein DnaJ; Provisional
Probab=85.61 E-value=0.78 Score=44.81 Aligned_cols=50 Identities=24% Similarity=0.736 Sum_probs=34.5
Q ss_pred CCCCCCCCccc------eEeCCCCCCcceeeeCCCC--cceeCCCCCcCcee--eCCCCC
Q 048504 226 GFVCGSCGDVR------FVPCGNCSGSRKVFDEADG--VPKRCLECNENGLI--RCPDCC 275 (277)
Q Consensus 226 ~~~C~~CGg~r------fVpC~~C~GS~Kv~~~~~~--~~~rC~~CNEnGLv--rCp~C~ 275 (277)
...|..|.|.+ ...|+.|+|+-.+...... ....|+.|+--|.+ .|+.|.
T Consensus 156 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~C~~C~ 215 (382)
T PRK14291 156 YVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVLREPCSKCN 215 (382)
T ss_pred eccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceEEccCCCCCC
Confidence 35788887765 4669999999776543211 24689999888855 477774
No 172
>PRK14301 chaperone protein DnaJ; Provisional
Probab=85.53 E-value=0.73 Score=44.90 Aligned_cols=49 Identities=29% Similarity=0.764 Sum_probs=30.8
Q ss_pred CCCCCCCccce------EeCCCCCCcceeeeCCC--CcceeCCCCCcCcee---eCCCCC
Q 048504 227 FVCGSCGDVRF------VPCGNCSGSRKVFDEAD--GVPKRCLECNENGLI---RCPDCC 275 (277)
Q Consensus 227 ~~C~~CGg~rf------VpC~~C~GS~Kv~~~~~--~~~~rC~~CNEnGLv---rCp~C~ 275 (277)
..|..|.|.+. ..|+.|+|+-.+....+ .....|+.|+-.|.+ .|+.|.
T Consensus 145 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 204 (373)
T PRK14301 145 VTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCK 204 (373)
T ss_pred ccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecCCCCCCCC
Confidence 46777766553 55888888766543221 124678888877754 577774
No 173
>PRK14292 chaperone protein DnaJ; Provisional
Probab=85.32 E-value=0.77 Score=44.50 Aligned_cols=49 Identities=31% Similarity=0.657 Sum_probs=34.4
Q ss_pred CCCCCCCccc-------eEeCCCCCCcceeeeCC---CC---cceeCCCCCcCcee---eCCCCC
Q 048504 227 FVCGSCGDVR-------FVPCGNCSGSRKVFDEA---DG---VPKRCLECNENGLI---RCPDCC 275 (277)
Q Consensus 227 ~~C~~CGg~r-------fVpC~~C~GS~Kv~~~~---~~---~~~rC~~CNEnGLv---rCp~C~ 275 (277)
..|..|.|.+ ...|..|+|+-.+.... .+ ....|+.|+-.|.+ +|+.|.
T Consensus 140 ~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 204 (371)
T PRK14292 140 TECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCR 204 (371)
T ss_pred ecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCC
Confidence 5788887765 46799999997664321 01 13589999999976 688884
No 174
>PRK14296 chaperone protein DnaJ; Provisional
Probab=84.97 E-value=0.86 Score=44.46 Aligned_cols=37 Identities=27% Similarity=0.814 Sum_probs=29.4
Q ss_pred CCCCCCCccceE---------------eCCCCCCcceeeeCCCCcceeCCCCCcCcee
Q 048504 227 FVCGSCGDVRFV---------------PCGNCSGSRKVFDEADGVPKRCLECNENGLI 269 (277)
Q Consensus 227 ~~C~~CGg~rfV---------------pC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLv 269 (277)
..|..|+|.+.+ +|+.|+|.-++.. ..|+.|+-.|.+
T Consensus 167 ~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~------~~C~~C~G~g~v 218 (372)
T PRK14296 167 HICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIK------NKCKNCKGKGKY 218 (372)
T ss_pred ccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeec------ccccCCCCceEE
Confidence 579999988654 7999999987753 459999988865
No 175
>PRK14280 chaperone protein DnaJ; Provisional
Probab=84.78 E-value=0.95 Score=44.13 Aligned_cols=50 Identities=30% Similarity=0.686 Sum_probs=32.9
Q ss_pred CCCCCCCCccc------eEeCCCCCCcceeeeCCC------CcceeCCCCCcCcee---eCCCCC
Q 048504 226 GFVCGSCGDVR------FVPCGNCSGSRKVFDEAD------GVPKRCLECNENGLI---RCPDCC 275 (277)
Q Consensus 226 ~~~C~~CGg~r------fVpC~~C~GS~Kv~~~~~------~~~~rC~~CNEnGLv---rCp~C~ 275 (277)
...|..|.|.+ ...|+.|+|+-.+..... .....|+.|+-.|.+ +|+.|.
T Consensus 143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 207 (376)
T PRK14280 143 EETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCH 207 (376)
T ss_pred eccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCC
Confidence 35788887765 456888888866543211 124578888888865 577774
No 176
>PRK14288 chaperone protein DnaJ; Provisional
Probab=84.74 E-value=0.88 Score=44.28 Aligned_cols=49 Identities=31% Similarity=0.692 Sum_probs=27.1
Q ss_pred CCCCCCCccce-----EeCCCCCCcceeeeCCCC--cceeCCCCCcCcee---eCCCCC
Q 048504 227 FVCGSCGDVRF-----VPCGNCSGSRKVFDEADG--VPKRCLECNENGLI---RCPDCC 275 (277)
Q Consensus 227 ~~C~~CGg~rf-----VpC~~C~GS~Kv~~~~~~--~~~rC~~CNEnGLv---rCp~C~ 275 (277)
..|..|.|.+. ..|+.|+|.-.+....+. ....|+.|+-.|.+ .|+.|.
T Consensus 141 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 199 (369)
T PRK14288 141 SVCESCDGTGAKDKALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIKTPCQACK 199 (369)
T ss_pred ccCCCCCCcccCCCCCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEccccCccCC
Confidence 36666666542 447777777655432211 13467777776643 466663
No 177
>PRK10542 glutathionine S-transferase; Provisional
Probab=84.64 E-value=2.6 Score=35.93 Aligned_cols=59 Identities=8% Similarity=0.093 Sum_probs=40.9
Q ss_pred hHHHHHHHHHhCCCeEEEEECCCCHH---HHHHHHHHhCCCCCCCcEEEe-CCEEEechhHHHHH
Q 048504 147 DCYAVRMIFRGFRVWVDERDVSMDSA---YKKELQCVFGGKNVTLPQVFI-RGKHVGNADVLKSM 207 (277)
Q Consensus 147 ~C~~Vk~iL~~~gV~y~ErDVs~d~~---~reELke~lG~~~~tvPqVFI-~G~~IGG~del~~L 207 (277)
.+.+++.+|+.+||+|+.+.|+.... ..+++.++... ..+|.+-+ ||..|-....+.+.
T Consensus 10 ~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~--g~vPvL~~~~g~~l~eS~aI~~Y 72 (201)
T PRK10542 10 CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPK--GQVPALLLDDGTLLTEGVAIMQY 72 (201)
T ss_pred HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcC--CCCCeEEeCCCcEeecHHHHHHH
Confidence 56788999999999998876654321 22456666543 68999976 66666666555553
No 178
>PRK14297 chaperone protein DnaJ; Provisional
Probab=84.35 E-value=0.89 Score=44.32 Aligned_cols=50 Identities=20% Similarity=0.564 Sum_probs=33.7
Q ss_pred CCCCCCCCccce------EeCCCCCCcceeeeCC------CCcceeCCCCCcCcee---eCCCCC
Q 048504 226 GFVCGSCGDVRF------VPCGNCSGSRKVFDEA------DGVPKRCLECNENGLI---RCPDCC 275 (277)
Q Consensus 226 ~~~C~~CGg~rf------VpC~~C~GS~Kv~~~~------~~~~~rC~~CNEnGLv---rCp~C~ 275 (277)
...|..|.|.+. ..|+.|+|.-++.... .....+|+.|+-.|.+ +|+.|.
T Consensus 148 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 212 (380)
T PRK14297 148 NENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCH 212 (380)
T ss_pred eccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCC
Confidence 357888877653 5699999987654321 0125688899888865 688774
No 179
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=84.29 E-value=5 Score=32.51 Aligned_cols=52 Identities=10% Similarity=0.008 Sum_probs=31.8
Q ss_pred HHHHHHHHh--------CCCeEEEEECCCCHH--HHHHHHHHhCCCCCCCcEEEeCCEEEec
Q 048504 149 YAVRMIFRG--------FRVWVDERDVSMDSA--YKKELQCVFGGKNVTLPQVFIRGKHVGN 200 (277)
Q Consensus 149 ~~Vk~iL~~--------~gV~y~ErDVs~d~~--~reELke~lG~~~~tvPqVFI~G~~IGG 200 (277)
+..-.+|+. ..+.|..+||...++ ..+++.++.-...--.|.|.|+|++||.
T Consensus 19 keTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~E 80 (93)
T PF07315_consen 19 KETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAE 80 (93)
T ss_dssp HHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEE
T ss_pred hhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEec
Confidence 456666654 346688999976543 3444544432223668999999999974
No 180
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=84.28 E-value=5.4 Score=29.99 Aligned_cols=50 Identities=16% Similarity=0.241 Sum_probs=33.2
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHh------CCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEE
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRG------FRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVF 192 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~------~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVF 192 (277)
+++|.+++ |+.|+.....|.. ..+.+..+|++.+.+ +.+.++- ..+|.++
T Consensus 22 lv~f~a~~------C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~~~i--~~~P~~~ 77 (103)
T cd03001 22 LVEFYAPW------CGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQS----LAQQYGV--RGFPTIK 77 (103)
T ss_pred EEEEECCC------CHHHHHHhHHHHHHHHHhcCCceEEEEECcchHH----HHHHCCC--CccCEEE
Confidence 44555554 5799988777754 246778888876643 4455554 6799873
No 181
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=84.26 E-value=1.2 Score=48.15 Aligned_cols=61 Identities=23% Similarity=0.469 Sum_probs=41.3
Q ss_pred CCCCCCCcEEEeCCEEEechhHHHHHHhhccHHHHhcCCCCCC-----CCCCCCCCCccce------------EeCCCCC
Q 048504 182 GGKNVTLPQVFIRGKHVGNADVLKSMYETGELARVLDGFPRRQ-----PGFVCGSCGDVRF------------VPCGNCS 244 (277)
Q Consensus 182 G~~~~tvPqVFI~G~~IGG~del~~L~EsGeL~klL~~~~~~~-----~~~~C~~CGg~rf------------VpC~~C~ 244 (277)
|...++=|.- |+|=+|++++|...=. +....++.+.. +++.|+.|.|.++ |||+.|+
T Consensus 687 GRTpRSNPAT-----Ytg~Fd~IR~lFA~tp-eAK~rGyk~grFSFNvkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~ 760 (935)
T COG0178 687 GRTPRSNPAT-----YTGVFDDIRELFAGTP-EAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCH 760 (935)
T ss_pred CCCCCCCccc-----hhcchHHHHHHHhcCh-HHHHcCCCcccccccCCCcCCccccCCceEEEEeccCCCceeeCCCcC
Confidence 4334566665 8889999999875433 33344444322 4679999998764 6799999
Q ss_pred Ccce
Q 048504 245 GSRK 248 (277)
Q Consensus 245 GS~K 248 (277)
|.+-
T Consensus 761 GkRY 764 (935)
T COG0178 761 GKRY 764 (935)
T ss_pred Cccc
Confidence 9764
No 182
>PRK14293 chaperone protein DnaJ; Provisional
Probab=84.25 E-value=0.89 Score=44.23 Aligned_cols=49 Identities=27% Similarity=0.687 Sum_probs=34.1
Q ss_pred CCCCCCCccc------eEeCCCCCCcceeeeCCC---C---cceeCCCCCcCcee---eCCCCC
Q 048504 227 FVCGSCGDVR------FVPCGNCSGSRKVFDEAD---G---VPKRCLECNENGLI---RCPDCC 275 (277)
Q Consensus 227 ~~C~~CGg~r------fVpC~~C~GS~Kv~~~~~---~---~~~rC~~CNEnGLv---rCp~C~ 275 (277)
..|..|.|.+ ...|+.|+|.-.+..... + ...+|+.|+-.|-+ +|+.|.
T Consensus 144 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 207 (374)
T PRK14293 144 ETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACG 207 (374)
T ss_pred ccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCC
Confidence 5677776654 356999999977643210 1 24689999999977 677774
No 183
>PRK14278 chaperone protein DnaJ; Provisional
Probab=84.08 E-value=1.1 Score=43.76 Aligned_cols=49 Identities=27% Similarity=0.730 Sum_probs=30.9
Q ss_pred CCCCCCCccc------eEeCCCCCCcceeeeCCC---C---cceeCCCCCcCcee---eCCCCC
Q 048504 227 FVCGSCGDVR------FVPCGNCSGSRKVFDEAD---G---VPKRCLECNENGLI---RCPDCC 275 (277)
Q Consensus 227 ~~C~~CGg~r------fVpC~~C~GS~Kv~~~~~---~---~~~rC~~CNEnGLv---rCp~C~ 275 (277)
..|..|.|.+ ...|+.|+|+-.+..... + ....|+.|+-.|-+ +|+.|.
T Consensus 140 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 203 (378)
T PRK14278 140 VLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECA 203 (378)
T ss_pred ccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCC
Confidence 4677777654 356888888866543210 0 14578888877754 577774
No 184
>PRK14276 chaperone protein DnaJ; Provisional
Probab=84.00 E-value=0.96 Score=44.14 Aligned_cols=50 Identities=26% Similarity=0.624 Sum_probs=31.9
Q ss_pred CCCCCCCCccce------EeCCCCCCcceeeeCCC------CcceeCCCCCcCcee---eCCCCC
Q 048504 226 GFVCGSCGDVRF------VPCGNCSGSRKVFDEAD------GVPKRCLECNENGLI---RCPDCC 275 (277)
Q Consensus 226 ~~~C~~CGg~rf------VpC~~C~GS~Kv~~~~~------~~~~rC~~CNEnGLv---rCp~C~ 275 (277)
...|..|.|.+. ..|+.|+|+-.+..... .....|+.|+-.|-+ +|+.|.
T Consensus 146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 210 (380)
T PRK14276 146 EATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCH 210 (380)
T ss_pred cccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCC
Confidence 357888877653 56888888866543210 124578888877754 577774
No 185
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=83.98 E-value=6.6 Score=33.73 Aligned_cols=55 Identities=7% Similarity=0.179 Sum_probs=36.1
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhC-----C-CeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE-Ee-CCE
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGF-----R-VWVDERDVSMDSAYKKELQCVFGGKNVTLPQV-FI-RGK 196 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~-----g-V~y~ErDVs~d~~~reELke~lG~~~~tvPqV-FI-~G~ 196 (277)
||-|+.+|| +.|+.+-.+|+.. + +.+..+||+..+++ .+..+-. ..+|.+ |. +|+
T Consensus 27 VvdF~A~WC------gpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dl----a~~y~I~-~~~t~~~ffk~g~ 89 (142)
T PLN00410 27 VIRFGHDWD------ETCMQMDEVLASVAETIKNFAVIYLVDITEVPDF----NTMYELY-DPCTVMFFFRNKH 89 (142)
T ss_pred EEEEECCCC------hhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHH----HHHcCcc-CCCcEEEEEECCe
Confidence 556777776 5999998888763 2 55688999988654 4445431 245666 44 444
No 186
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=83.84 E-value=6.5 Score=30.48 Aligned_cols=54 Identities=15% Similarity=0.252 Sum_probs=34.5
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHh----C---CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE--EeCCEE
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRG----F---RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQV--FIRGKH 197 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~----~---gV~y~ErDVs~d~~~reELke~lG~~~~tvPqV--FI~G~~ 197 (277)
||.|+++|| +.|+.+...|+. + .+.|..+|++ ++ ++.+.++- ..+|.+ |-+|+.
T Consensus 21 vv~F~a~wC------~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~----~~~~~~~v--~~~Pt~~~~~~g~~ 83 (102)
T cd02948 21 VVDVYQEWC------GPCKAVVSLFKKIKNELGDDLLHFATAEAD-TI----DTLKRYRG--KCEPTFLFYKNGEL 83 (102)
T ss_pred EEEEECCcC------HhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CH----HHHHHcCC--CcCcEEEEEECCEE
Confidence 556666665 799988777754 3 2567777777 33 34455554 678865 457764
No 187
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=83.74 E-value=0.83 Score=30.43 Aligned_cols=29 Identities=31% Similarity=0.772 Sum_probs=23.0
Q ss_pred eEeCCCCCCcceeeeC---CCCcceeCCCCCc
Q 048504 237 FVPCGNCSGSRKVFDE---ADGVPKRCLECNE 265 (277)
Q Consensus 237 fVpC~~C~GS~Kv~~~---~~~~~~rC~~CNE 265 (277)
.|.|++|+....+-++ ..+..++|+.|.+
T Consensus 2 ~i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~ 33 (36)
T PF13717_consen 2 IITCPNCQAKYEIDDEKIPPKGRKVRCSKCGH 33 (36)
T ss_pred EEECCCCCCEEeCCHHHCCCCCcEEECCCCCC
Confidence 3679999999888654 4567899999975
No 188
>PRK14288 chaperone protein DnaJ; Provisional
Probab=83.15 E-value=1.3 Score=43.15 Aligned_cols=38 Identities=29% Similarity=0.721 Sum_probs=30.1
Q ss_pred CCCCCCCccceE-----------eCCCCCCcceeeeCCCCcceeCCCCCcCceee
Q 048504 227 FVCGSCGDVRFV-----------PCGNCSGSRKVFDEADGVPKRCLECNENGLIR 270 (277)
Q Consensus 227 ~~C~~CGg~rfV-----------pC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLvr 270 (277)
..|..|+|.+.+ +|+.|+|.-++.. ..|+.|+-.|.++
T Consensus 157 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v~ 205 (369)
T PRK14288 157 ETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK------TPCQACKGKTYIL 205 (369)
T ss_pred cCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc------ccCccCCCcceEE
Confidence 579999998865 5999999988753 3499999888763
No 189
>PRK14280 chaperone protein DnaJ; Provisional
Probab=83.03 E-value=1.3 Score=43.26 Aligned_cols=37 Identities=27% Similarity=0.810 Sum_probs=29.5
Q ss_pred CCCCCCCccceE---------------eCCCCCCcceeeeCCCCcceeCCCCCcCcee
Q 048504 227 FVCGSCGDVRFV---------------PCGNCSGSRKVFDEADGVPKRCLECNENGLI 269 (277)
Q Consensus 227 ~~C~~CGg~rfV---------------pC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLv 269 (277)
..|..|+|.+.+ +|+.|+|.-+++. ..|+.|+-.|.+
T Consensus 161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v 212 (376)
T PRK14280 161 ETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIK------EKCPTCHGKGKV 212 (376)
T ss_pred ccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceec------CCCCCCCCceEE
Confidence 579999987653 6999999977653 459999988876
No 190
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=83.03 E-value=9.8 Score=28.13 Aligned_cols=59 Identities=10% Similarity=0.070 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhCCCeEEEEECCC--CHHHHHHHHHHhCCCCCCCcEEEeC-CEEEechhHHHH
Q 048504 147 DCYAVRMIFRGFRVWVDERDVSM--DSAYKKELQCVFGGKNVTLPQVFIR-GKHVGNADVLKS 206 (277)
Q Consensus 147 ~C~~Vk~iL~~~gV~y~ErDVs~--d~~~reELke~lG~~~~tvPqVFI~-G~~IGG~del~~ 206 (277)
.+..++.+|+..||+|+.+-++. .....+++.+..-. ...+|.+-++ |..|-..-.+.+
T Consensus 11 ~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~-~g~vP~l~~~~~~~l~es~AI~~ 72 (76)
T PF02798_consen 11 RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPM-FGKVPALEDGDGFVLTESNAILR 72 (76)
T ss_dssp TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTT-SSSSSEEEETTTEEEESHHHHHH
T ss_pred chHHHHHHHHHhcccCceEEEecccccccchhhhhcccc-cceeeEEEECCCCEEEcHHHHHH
Confidence 77999999999999998776654 33334677766532 1579999999 888876655544
No 191
>PRK14285 chaperone protein DnaJ; Provisional
Probab=82.98 E-value=1.1 Score=43.43 Aligned_cols=38 Identities=26% Similarity=0.767 Sum_probs=29.7
Q ss_pred CCCCCCCccceE-----------eCCCCCCcceeeeCCCCcceeCCCCCcCceee
Q 048504 227 FVCGSCGDVRFV-----------PCGNCSGSRKVFDEADGVPKRCLECNENGLIR 270 (277)
Q Consensus 227 ~~C~~CGg~rfV-----------pC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLvr 270 (277)
..|..|.|.+.+ +|+.|+|.-++.. ..|..|+-.|.++
T Consensus 164 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v~ 212 (365)
T PRK14285 164 SICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIIS------NPCKSCKGKGSLK 212 (365)
T ss_pred ccCCCccCceeEEecCceeEEeeecCCCCCcccccC------CCCCCCCCCCEEe
Confidence 479999987654 7999999977753 4699999888763
No 192
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=82.86 E-value=1.1 Score=44.66 Aligned_cols=49 Identities=31% Similarity=0.788 Sum_probs=29.4
Q ss_pred CCCCCCCccc-----eEeCCCCCCcceeeeCC-CC-----cceeCCCCCcCcee-----eCCCCC
Q 048504 227 FVCGSCGDVR-----FVPCGNCSGSRKVFDEA-DG-----VPKRCLECNENGLI-----RCPDCC 275 (277)
Q Consensus 227 ~~C~~CGg~r-----fVpC~~C~GS~Kv~~~~-~~-----~~~rC~~CNEnGLv-----rCp~C~ 275 (277)
..|..|.|.+ ...|+.|+|+-.++... -+ ....|+.|+--|-+ +|+.|.
T Consensus 151 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~ 215 (421)
T PTZ00037 151 VICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCS 215 (421)
T ss_pred ccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCC
Confidence 4666665554 34588888886543211 11 23478888877765 477774
No 193
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=82.84 E-value=4 Score=30.66 Aligned_cols=56 Identities=16% Similarity=0.285 Sum_probs=34.9
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhC---------CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEE--eCCEE
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGF---------RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVF--IRGKH 197 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~---------gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVF--I~G~~ 197 (277)
-++.|.++|| +.|+.....|+.. .+.+..+|.+.+. .+.+..+- ..+|.++ -+|+.
T Consensus 19 ~lv~f~a~wC------~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~v--~~~Pt~~~~~~g~~ 85 (102)
T cd03005 19 HFVKFFAPWC------GHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR----ELCSEFQV--RGYPTLLLFKDGEK 85 (102)
T ss_pred EEEEEECCCC------HHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh----hhHhhcCC--CcCCEEEEEeCCCe
Confidence 3556666664 7999776655432 4667788887665 33444543 6899864 46643
No 194
>PRK14281 chaperone protein DnaJ; Provisional
Probab=82.75 E-value=1.2 Score=43.84 Aligned_cols=49 Identities=29% Similarity=0.702 Sum_probs=30.7
Q ss_pred CCCCCCCccce-----EeCCCCCCcceeeeCCC------CcceeCCCCCcCcee---eCCCCC
Q 048504 227 FVCGSCGDVRF-----VPCGNCSGSRKVFDEAD------GVPKRCLECNENGLI---RCPDCC 275 (277)
Q Consensus 227 ~~C~~CGg~rf-----VpC~~C~GS~Kv~~~~~------~~~~rC~~CNEnGLv---rCp~C~ 275 (277)
..|..|.|.+. ..|+.|+|+-.+..... .....|+.|+-.|.+ +|+.|.
T Consensus 164 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 226 (397)
T PRK14281 164 VPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACY 226 (397)
T ss_pred ecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCC
Confidence 46776666543 45888888876543210 124578888888864 577774
No 195
>PRK14282 chaperone protein DnaJ; Provisional
Probab=82.60 E-value=1.9 Score=41.95 Aligned_cols=38 Identities=32% Similarity=0.786 Sum_probs=30.2
Q ss_pred CCCCCCCccceE---------------eCCCCCCcceeeeCCCCcceeCCCCCcCceee
Q 048504 227 FVCGSCGDVRFV---------------PCGNCSGSRKVFDEADGVPKRCLECNENGLIR 270 (277)
Q Consensus 227 ~~C~~CGg~rfV---------------pC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLvr 270 (277)
..|..|+|.+.+ +|+.|+|.-++.. ..|..|+..|.+.
T Consensus 170 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v~ 222 (369)
T PRK14282 170 VTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPG------EYCHECGGSGRIR 222 (369)
T ss_pred cCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCC------CCCCCCCCceeEE
Confidence 579999988654 6999999987743 4599999988764
No 196
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=82.36 E-value=4.8 Score=31.45 Aligned_cols=51 Identities=18% Similarity=0.265 Sum_probs=34.5
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhC-----CCeEEEEECC-CCHHHHHHHHHHhCCCCCCCcEEE
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGF-----RVWVDERDVS-MDSAYKKELQCVFGGKNVTLPQVF 192 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~-----gV~y~ErDVs-~d~~~reELke~lG~~~~tvPqVF 192 (277)
-||.|.++|| +.|+...-.|+.+ ++.+..+|.+ .++ ++.+.++- ..+|.++
T Consensus 21 vlV~F~a~WC------~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~----~l~~~~~V--~~~PT~~ 77 (100)
T cd02999 21 TAVLFYASWC------PFSASFRPHFNALSSMFPQIRHLAIEESSIKP----SLLSRYGV--VGFPTIL 77 (100)
T ss_pred EEEEEECCCC------HHHHhHhHHHHHHHHHhccCceEEEECCCCCH----HHHHhcCC--eecCEEE
Confidence 4666777775 6999888777653 4667777776 443 45555654 7899874
No 197
>PRK14279 chaperone protein DnaJ; Provisional
Probab=82.35 E-value=1.4 Score=43.37 Aligned_cols=49 Identities=27% Similarity=0.692 Sum_probs=28.7
Q ss_pred CCCCCCCccce------EeCCCCCCcceeeeCCC--CcceeCCCCCcCcee---eCCCCC
Q 048504 227 FVCGSCGDVRF------VPCGNCSGSRKVFDEAD--GVPKRCLECNENGLI---RCPDCC 275 (277)
Q Consensus 227 ~~C~~CGg~rf------VpC~~C~GS~Kv~~~~~--~~~~rC~~CNEnGLv---rCp~C~ 275 (277)
..|..|.|.+. ..|+.|+|+-.+..... .....|+.|+-.|.+ +|+.|.
T Consensus 174 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~ 233 (392)
T PRK14279 174 APCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIEDPCEECK 233 (392)
T ss_pred ccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeCCcCCCCC
Confidence 46777766553 45777777766543221 124677777777754 466663
No 198
>PRK14284 chaperone protein DnaJ; Provisional
Probab=82.31 E-value=1.5 Score=42.98 Aligned_cols=37 Identities=30% Similarity=0.715 Sum_probs=29.4
Q ss_pred CCCCCCCccce-----------EeCCCCCCcceeeeCCCCcceeCCCCCcCcee
Q 048504 227 FVCGSCGDVRF-----------VPCGNCSGSRKVFDEADGVPKRCLECNENGLI 269 (277)
Q Consensus 227 ~~C~~CGg~rf-----------VpC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLv 269 (277)
..|..|+|.+. .+|+.|+|.-+++. ..|+.|+-.|.+
T Consensus 176 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v 223 (391)
T PRK14284 176 KVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT------DPCSVCRGQGRI 223 (391)
T ss_pred eecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC------CcCCCCCCccee
Confidence 57999998876 47999999976643 459999988876
No 199
>PRK14279 chaperone protein DnaJ; Provisional
Probab=82.23 E-value=1.2 Score=43.68 Aligned_cols=38 Identities=29% Similarity=0.892 Sum_probs=30.6
Q ss_pred CCCCCCCccceE-----------eCCCCCCcceeeeCCCCcceeCCCCCcCceee
Q 048504 227 FVCGSCGDVRFV-----------PCGNCSGSRKVFDEADGVPKRCLECNENGLIR 270 (277)
Q Consensus 227 ~~C~~CGg~rfV-----------pC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLvr 270 (277)
..|..|.|.+.+ +|+.|+|.-++.. .+|..|+-.|.++
T Consensus 191 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~------~~C~~C~G~g~v~ 239 (392)
T PRK14279 191 KVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE------DPCEECKGTGVTT 239 (392)
T ss_pred CCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC------CcCCCCCCCeEEE
Confidence 579999998764 6999999988753 4599999888764
No 200
>PRK14277 chaperone protein DnaJ; Provisional
Probab=82.21 E-value=1.3 Score=43.38 Aligned_cols=49 Identities=27% Similarity=0.590 Sum_probs=30.1
Q ss_pred CCCCCCCccc------eEeCCCCCCcceeeeCCC------CcceeCCCCCcCcee---eCCCCC
Q 048504 227 FVCGSCGDVR------FVPCGNCSGSRKVFDEAD------GVPKRCLECNENGLI---RCPDCC 275 (277)
Q Consensus 227 ~~C~~CGg~r------fVpC~~C~GS~Kv~~~~~------~~~~rC~~CNEnGLv---rCp~C~ 275 (277)
..|..|.|.+ ...|+.|+|+-.+..... .....|+.|+-.|.+ +|+.|.
T Consensus 156 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 219 (386)
T PRK14277 156 EKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCG 219 (386)
T ss_pred ccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCC
Confidence 4666666544 456888888866543210 013578888887765 477774
No 201
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=82.06 E-value=4.9 Score=30.09 Aligned_cols=51 Identities=16% Similarity=0.313 Sum_probs=33.2
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHh----C----CCeEEEEECCC-CHHHHHHHHHHhCCCCCCCcEEEe
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRG----F----RVWVDERDVSM-DSAYKKELQCVFGGKNVTLPQVFI 193 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~----~----gV~y~ErDVs~-d~~~reELke~lG~~~~tvPqVFI 193 (277)
|+.|++++ |+.|+....+|+. + ++.+..+|.+. ++. +.+.++- ..+|.+++
T Consensus 22 ~v~f~a~~------C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~~i--~~~P~~~~ 81 (105)
T cd02998 22 LVEFYAPW------CGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKD----LAKKYGV--SGFPTLKF 81 (105)
T ss_pred EEEEECCC------CHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchh----hHHhCCC--CCcCEEEE
Confidence 55666665 5899877777654 2 36677888877 543 3444554 68998854
No 202
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=82.05 E-value=2.1 Score=40.81 Aligned_cols=68 Identities=19% Similarity=0.346 Sum_probs=49.0
Q ss_pred CcEEEEEec-CCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHH
Q 048504 129 DRIVVYLTS-LRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKS 206 (277)
Q Consensus 129 ~kVVLYttS-lcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~ 206 (277)
+-|.||.=+ ...+...-|+|-++.-+|+..+|+|+.+|-.+ +.+... .++|-|-+||++|-+.+-+..
T Consensus 44 D~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~--------~~rSr~--G~lPFIELNGe~iaDS~~I~~ 112 (281)
T KOG4244|consen 44 DTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSL--------KRRSRN--GTLPFIELNGEHIADSDLIED 112 (281)
T ss_pred CeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccc--------eeeccC--CCcceEEeCCeeccccHHHHH
Confidence 345566432 22223445899999999999999999998764 222222 589999999999999877654
No 203
>PRK14301 chaperone protein DnaJ; Provisional
Probab=81.96 E-value=1.3 Score=43.16 Aligned_cols=38 Identities=32% Similarity=0.872 Sum_probs=29.9
Q ss_pred CCCCCCCccceE-----------eCCCCCCcceeeeCCCCcceeCCCCCcCceee
Q 048504 227 FVCGSCGDVRFV-----------PCGNCSGSRKVFDEADGVPKRCLECNENGLIR 270 (277)
Q Consensus 227 ~~C~~CGg~rfV-----------pC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLvr 270 (277)
..|..|.|.+.+ +|+.|+|.-++.. ..|+.|+-.|.++
T Consensus 162 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v~ 210 (373)
T PRK14301 162 ETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT------HPCPKCKGSGIVQ 210 (373)
T ss_pred cccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC------CCCCCCCCCceec
Confidence 579999988654 7999999988753 4599999888763
No 204
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=81.84 E-value=0.28 Score=44.05 Aligned_cols=87 Identities=20% Similarity=0.408 Sum_probs=62.8
Q ss_pred CCcEEEeCCEEEechhHHHHHHhhccHHHHhcCCCCC--CCCCCCCCCCccceEeCCCCCCcceeeeCCCCcceeCCCCC
Q 048504 187 TLPQVFIRGKHVGNADVLKSMYETGELARVLDGFPRR--QPGFVCGSCGDVRFVPCGNCSGSRKVFDEADGVPKRCLECN 264 (277)
Q Consensus 187 tvPqVFI~G~~IGG~del~~L~EsGeL~klL~~~~~~--~~~~~C~~CGg~rfVpC~~C~GS~Kv~~~~~~~~~rC~~CN 264 (277)
..|.-+++..++=-..||.++. +|.|.+.|+.+-.. ..-..|+-|-+.+| .|.-|+.+.-+|-=+.....+|+.|+
T Consensus 102 ~~~~hl~~~~~~YSl~DL~~v~-~G~L~~~L~~l~~~~~~HV~~C~lC~~kGf-iCe~C~~~~~IfPF~~~~~~~C~~C~ 179 (202)
T PF13901_consen 102 QPRDHLLEDPHLYSLADLVQVK-SGQLLPQLEKLVQFAEKHVYSCELCQQKGF-ICEICNSDDIIFPFQIDTTVRCPKCK 179 (202)
T ss_pred cchhhhhhCCceEcHHHHHHHh-hchHHHHHHHHHHHHHHHHHHhHHHHhCCC-CCccCCCCCCCCCCCCCCeeeCCcCc
Confidence 5577778887888889999885 88999988764322 12348999999998 79999999666543444689999987
Q ss_pred cCc------eeeCCCCC
Q 048504 265 ENG------LIRCPDCC 275 (277)
Q Consensus 265 EnG------LvrCp~C~ 275 (277)
--= -..||.|.
T Consensus 180 ~v~H~~C~~~~~CpkC~ 196 (202)
T PF13901_consen 180 SVFHKSCFRKKSCPKCA 196 (202)
T ss_pred cccchhhcCCCCCCCcH
Confidence 421 15577774
No 205
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=81.78 E-value=7.9 Score=32.55 Aligned_cols=67 Identities=22% Similarity=0.422 Sum_probs=40.5
Q ss_pred CCCChhHH-----------HHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHHHHhh
Q 048504 142 RRTFEDCY-----------AVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSMYET 210 (277)
Q Consensus 142 R~Tc~~C~-----------~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~L~Es 210 (277)
.+||+.|. .++..|..+||.+....+.++.+ ++... ...-|.|.|||+.
T Consensus 12 g~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~---~~~~~----~~~S~~I~inG~p------------- 71 (120)
T PF10865_consen 12 GKTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE---EFARQ----PLESPTIRINGRP------------- 71 (120)
T ss_pred CCcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH---HHhhc----ccCCCeeeECCEe-------------
Confidence 36888886 45556777888754444433332 21111 1578999999995
Q ss_pred ccHHHHhcCCCCCCCCCCCCCCC
Q 048504 211 GELARVLDGFPRRQPGFVCGSCG 233 (277)
Q Consensus 211 GeL~klL~~~~~~~~~~~C~~CG 233 (277)
|+.+| ++.. ....|+.||
T Consensus 72 --iE~~l-~~~v--~~s~C~~c~ 89 (120)
T PF10865_consen 72 --IEDLL-GAEV--GESPCESCG 89 (120)
T ss_pred --hhHhh-CCcc--ccCcccccc
Confidence 66777 3332 235777666
No 206
>PRK14283 chaperone protein DnaJ; Provisional
Probab=81.77 E-value=1.3 Score=43.08 Aligned_cols=49 Identities=27% Similarity=0.668 Sum_probs=33.8
Q ss_pred CCCCCCCccc------eEeCCCCCCcceeeeCCC------CcceeCCCCCcCcee---eCCCCC
Q 048504 227 FVCGSCGDVR------FVPCGNCSGSRKVFDEAD------GVPKRCLECNENGLI---RCPDCC 275 (277)
Q Consensus 227 ~~C~~CGg~r------fVpC~~C~GS~Kv~~~~~------~~~~rC~~CNEnGLv---rCp~C~ 275 (277)
..|..|.|.+ ...|+.|+|+-.+..... .....|+.|+-.|.+ .|..|.
T Consensus 147 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 210 (378)
T PRK14283 147 KKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCH 210 (378)
T ss_pred ccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCC
Confidence 4677776643 456999999977653211 124689999999876 788885
No 207
>PRK14286 chaperone protein DnaJ; Provisional
Probab=81.73 E-value=1.5 Score=42.70 Aligned_cols=38 Identities=29% Similarity=0.767 Sum_probs=30.6
Q ss_pred CCCCCCCccceE-----------eCCCCCCcceeeeCCCCcceeCCCCCcCceee
Q 048504 227 FVCGSCGDVRFV-----------PCGNCSGSRKVFDEADGVPKRCLECNENGLIR 270 (277)
Q Consensus 227 ~~C~~CGg~rfV-----------pC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLvr 270 (277)
..|..|.|.+.+ +|+.|+|.-++.. .+|..|+-.|.++
T Consensus 168 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~~~ 216 (372)
T PRK14286 168 TTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVIS------NPCKTCGGQGLQE 216 (372)
T ss_pred ccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEec------ccCCCCCCCcEEe
Confidence 579999988754 6999999988753 3599999888775
No 208
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=81.61 E-value=1.5 Score=43.79 Aligned_cols=40 Identities=28% Similarity=0.786 Sum_probs=31.5
Q ss_pred CCCCCCCccce---------------EeCCCCCCcceeeeCCCCcceeCCCCCcCceee
Q 048504 227 FVCGSCGDVRF---------------VPCGNCSGSRKVFDEADGVPKRCLECNENGLIR 270 (277)
Q Consensus 227 ~~C~~CGg~rf---------------VpC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLvr 270 (277)
..|..|+|.+. .+|+.|+|.-+++.. ..+|..|+-.|.++
T Consensus 167 ~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~----~~~C~~C~G~g~v~ 221 (421)
T PTZ00037 167 VDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPE----SKKCKNCSGKGVKK 221 (421)
T ss_pred ccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccc----cccCCcCCCcceee
Confidence 57999988763 379999999887763 35699999988775
No 209
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=81.49 E-value=1.4 Score=44.63 Aligned_cols=47 Identities=32% Similarity=0.695 Sum_probs=36.7
Q ss_pred CCCCCCCCccceEeCCCCCCcceeeeCCCCcceeCCCCCcCc--eeeCCCCCC
Q 048504 226 GFVCGSCGDVRFVPCGNCSGSRKVFDEADGVPKRCLECNENG--LIRCPDCCS 276 (277)
Q Consensus 226 ~~~C~~CGg~rfVpC~~C~GS~Kv~~~~~~~~~rC~~CNEnG--LvrCp~C~~ 276 (277)
...|..||-. +.|+.|+++...+.. ...++|..|+-.- -.+||.|-+
T Consensus 213 ~~~C~~Cg~~--~~C~~C~~~l~~h~~--~~~l~Ch~Cg~~~~~~~~Cp~C~s 261 (505)
T TIGR00595 213 NLLCRSCGYI--LCCPNCDVSLTYHKK--EGKLRCHYCGYQEPIPKTCPQCGS 261 (505)
T ss_pred eeEhhhCcCc--cCCCCCCCceEEecC--CCeEEcCCCcCcCCCCCCCCCCCC
Confidence 4589999964 679999999766653 3479999998765 458999975
No 210
>PRK14290 chaperone protein DnaJ; Provisional
Probab=81.26 E-value=1.6 Score=42.35 Aligned_cols=38 Identities=24% Similarity=0.735 Sum_probs=29.4
Q ss_pred CCCCCCCccce---------------EeCCCCCCcceeeeCCCCcceeCCCCCcCceee
Q 048504 227 FVCGSCGDVRF---------------VPCGNCSGSRKVFDEADGVPKRCLECNENGLIR 270 (277)
Q Consensus 227 ~~C~~CGg~rf---------------VpC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLvr 270 (277)
..|..|+|.+. .+|+.|+|.-++. ..+|+.|+-.|.++
T Consensus 166 ~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~------~~~C~~C~G~g~v~ 218 (365)
T PRK14290 166 ITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP------EEKCPRCNGTGTVV 218 (365)
T ss_pred ccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc------cCCCCCCCCceeEE
Confidence 57999988774 4799999997763 35699999888753
No 211
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=81.16 E-value=1.8 Score=31.97 Aligned_cols=37 Identities=30% Similarity=0.757 Sum_probs=25.2
Q ss_pred CCCCCCCCccceE---------------eCCCCCCcceeeeCCCCcceeCCCCCcCc
Q 048504 226 GFVCGSCGDVRFV---------------PCGNCSGSRKVFDEADGVPKRCLECNENG 267 (277)
Q Consensus 226 ~~~C~~CGg~rfV---------------pC~~C~GS~Kv~~~~~~~~~rC~~CNEnG 267 (277)
...|..|.|.+++ +|+.|+|+-+++ + ..+|+.|+-+|
T Consensus 15 ~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~----~~~C~~C~G~g 66 (66)
T PF00684_consen 15 PKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-E----KDPCKTCKGSG 66 (66)
T ss_dssp -EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--T----SSB-SSSTTSS
T ss_pred CcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-C----CCCCCCCCCcC
Confidence 3589999988665 499999998887 3 36799998654
No 212
>PRK14276 chaperone protein DnaJ; Provisional
Probab=81.09 E-value=1.4 Score=42.92 Aligned_cols=38 Identities=29% Similarity=0.771 Sum_probs=29.8
Q ss_pred CCCCCCCccce---------------EeCCCCCCcceeeeCCCCcceeCCCCCcCceee
Q 048504 227 FVCGSCGDVRF---------------VPCGNCSGSRKVFDEADGVPKRCLECNENGLIR 270 (277)
Q Consensus 227 ~~C~~CGg~rf---------------VpC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLvr 270 (277)
..|..|+|.+. .+|+.|+|.-++.. .+|..|+-.|.+.
T Consensus 164 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~~~ 216 (380)
T PRK14276 164 VTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIK------EPCQTCHGTGHEK 216 (380)
T ss_pred ccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcccc------CCCCCCCCceEEE
Confidence 57999998754 36999999977753 4599999888763
No 213
>PRK14278 chaperone protein DnaJ; Provisional
Probab=81.06 E-value=1.6 Score=42.70 Aligned_cols=38 Identities=34% Similarity=0.867 Sum_probs=29.9
Q ss_pred CCCCCCCccce---------------EeCCCCCCcceeeeCCCCcceeCCCCCcCceee
Q 048504 227 FVCGSCGDVRF---------------VPCGNCSGSRKVFDEADGVPKRCLECNENGLIR 270 (277)
Q Consensus 227 ~~C~~CGg~rf---------------VpC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLvr 270 (277)
..|..|.|.+. .+|+.|+|.-+++. .+|+.|+-.|.+.
T Consensus 157 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v~ 209 (378)
T PRK14278 157 VTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIP------DPCHECAGDGRVR 209 (378)
T ss_pred eecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeC------CCCCCCCCceeEe
Confidence 47999998754 36999999988753 3599999988763
No 214
>PRK14277 chaperone protein DnaJ; Provisional
Probab=81.04 E-value=1.6 Score=42.62 Aligned_cols=37 Identities=30% Similarity=0.763 Sum_probs=29.9
Q ss_pred CCCCCCCccceE---------------eCCCCCCcceeeeCCCCcceeCCCCCcCcee
Q 048504 227 FVCGSCGDVRFV---------------PCGNCSGSRKVFDEADGVPKRCLECNENGLI 269 (277)
Q Consensus 227 ~~C~~CGg~rfV---------------pC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLv 269 (277)
..|..|+|.+.+ +|+.|+|.-+++. .+|..|+-.|.+
T Consensus 173 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v 224 (386)
T PRK14277 173 VTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT------DPCNKCGGTGRI 224 (386)
T ss_pred ccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc------CCCCCCCCCcEE
Confidence 579999988653 6999999988753 359999998876
No 215
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=80.89 E-value=1.3 Score=43.16 Aligned_cols=50 Identities=28% Similarity=0.654 Sum_probs=37.0
Q ss_pred CCCCCCCCccceE-----eCCCCCCcceeeeC-------CCCcceeCCCCCcCcee-----eCCCCC
Q 048504 226 GFVCGSCGDVRFV-----PCGNCSGSRKVFDE-------ADGVPKRCLECNENGLI-----RCPDCC 275 (277)
Q Consensus 226 ~~~C~~CGg~rfV-----pC~~C~GS~Kv~~~-------~~~~~~rC~~CNEnGLv-----rCp~C~ 275 (277)
...|..|-|.++- +|+.|.|+.-.... .....++|..||..|-+ +|+.|.
T Consensus 127 ~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~ 193 (337)
T KOG0712|consen 127 NFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCS 193 (337)
T ss_pred CccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccc
Confidence 4678888666543 39999999654211 12348999999999999 999995
No 216
>PRK14873 primosome assembly protein PriA; Provisional
Probab=80.44 E-value=2 Score=45.27 Aligned_cols=48 Identities=31% Similarity=0.758 Sum_probs=37.0
Q ss_pred CCCCCCCCCccceEeCCCCCCcceeeeCCCCcceeCCCCCcCc-eeeCCCCCC
Q 048504 225 PGFVCGSCGDVRFVPCGNCSGSRKVFDEADGVPKRCLECNENG-LIRCPDCCS 276 (277)
Q Consensus 225 ~~~~C~~CGg~rfVpC~~C~GS~Kv~~~~~~~~~rC~~CNEnG-LvrCp~C~~ 276 (277)
+.-.|..||- -+.|+.|+++...+.. ...++|..|+-.- -.+||.|-+
T Consensus 382 p~l~C~~Cg~--~~~C~~C~~~L~~h~~--~~~l~Ch~CG~~~~p~~Cp~Cgs 430 (665)
T PRK14873 382 PSLACARCRT--PARCRHCTGPLGLPSA--GGTPRCRWCGRAAPDWRCPRCGS 430 (665)
T ss_pred CeeEhhhCcC--eeECCCCCCceeEecC--CCeeECCCCcCCCcCccCCCCcC
Confidence 3458999985 4789999999776543 3489999998643 458999975
No 217
>PRK14289 chaperone protein DnaJ; Provisional
Probab=80.42 E-value=2.3 Score=41.46 Aligned_cols=39 Identities=28% Similarity=0.783 Sum_probs=29.6
Q ss_pred CCCCCCCCccceE---------------eCCCCCCcceeeeCCCCcceeCCCCCcCceee
Q 048504 226 GFVCGSCGDVRFV---------------PCGNCSGSRKVFDEADGVPKRCLECNENGLIR 270 (277)
Q Consensus 226 ~~~C~~CGg~rfV---------------pC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLvr 270 (277)
...|..|.|.+.+ +|+.|+|.-++. ..+|..|+-.|.+.
T Consensus 171 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~------~~~C~~C~G~g~v~ 224 (386)
T PRK14289 171 SETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII------KKKCKKCGGEGIVY 224 (386)
T ss_pred CCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc------CcCCCCCCCCcEEe
Confidence 3679999887554 699999996654 35699999888763
No 218
>PRK10767 chaperone protein DnaJ; Provisional
Probab=80.38 E-value=1.8 Score=42.00 Aligned_cols=38 Identities=26% Similarity=0.736 Sum_probs=29.8
Q ss_pred CCCCCCCccceE-----------eCCCCCCcceeeeCCCCcceeCCCCCcCceee
Q 048504 227 FVCGSCGDVRFV-----------PCGNCSGSRKVFDEADGVPKRCLECNENGLIR 270 (277)
Q Consensus 227 ~~C~~CGg~rfV-----------pC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLvr 270 (277)
..|..|+|.+.+ +|+.|+|.-++.. .+|..|+-.|.++
T Consensus 160 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v~ 208 (371)
T PRK10767 160 KTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIK------DPCKKCHGQGRVE 208 (371)
T ss_pred ccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECC------CCCCCCCCCceEe
Confidence 479999988765 5999999987643 4599999888763
No 219
>PRK14297 chaperone protein DnaJ; Provisional
Probab=80.35 E-value=1.8 Score=42.27 Aligned_cols=37 Identities=32% Similarity=0.884 Sum_probs=29.7
Q ss_pred CCCCCCCccceE---------------eCCCCCCcceeeeCCCCcceeCCCCCcCcee
Q 048504 227 FVCGSCGDVRFV---------------PCGNCSGSRKVFDEADGVPKRCLECNENGLI 269 (277)
Q Consensus 227 ~~C~~CGg~rfV---------------pC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLv 269 (277)
..|..|.|.+.+ +|+.|+|.-++.. ..|..|+-.|.+
T Consensus 166 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v 217 (380)
T PRK14297 166 KTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIE------DPCNKCHGKGKV 217 (380)
T ss_pred ccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcC------CCCCCCCCCeEE
Confidence 579999988654 6999999987753 459999988865
No 220
>PRK14294 chaperone protein DnaJ; Provisional
Probab=80.04 E-value=1.8 Score=42.08 Aligned_cols=37 Identities=32% Similarity=0.757 Sum_probs=29.1
Q ss_pred CCCCCCCccceE-----------eCCCCCCcceeeeCCCCcceeCCCCCcCcee
Q 048504 227 FVCGSCGDVRFV-----------PCGNCSGSRKVFDEADGVPKRCLECNENGLI 269 (277)
Q Consensus 227 ~~C~~CGg~rfV-----------pC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLv 269 (277)
..|..|.|.+.+ +|+.|+|.-++.. ..|..|+-.|.+
T Consensus 162 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v 209 (366)
T PRK14294 162 TTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIV------SPCKTCHGQGRV 209 (366)
T ss_pred ccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecC------cCCCCCCCceEe
Confidence 479999888654 6999999987753 459999988876
No 221
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=80.03 E-value=0.91 Score=37.95 Aligned_cols=63 Identities=13% Similarity=0.092 Sum_probs=31.6
Q ss_pred ccCCCCCCcEEEEEecCCCCCCCChhHHHH----HHHHHhC-CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEe
Q 048504 122 IRLPGTEDRIVVYLTSLRGIRRTFEDCYAV----RMIFRGF-RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFI 193 (277)
Q Consensus 122 i~~~~~~~kVVLYttSlcgiR~Tc~~C~~V----k~iL~~~-gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI 193 (277)
+......-.|+|++.+|| +||... .++++.. +|++..+..+.+.+..+.+.. .| ...+|.+++
T Consensus 36 l~~~~~~~~ilvi~e~WC------gD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~g--~~~IP~~I~ 103 (129)
T PF14595_consen 36 LKSIQKPYNILVITETWC------GDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-NG--GRSIPTFIF 103 (129)
T ss_dssp HHT--S-EEEEEE--TT-------HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT--S--S--SSEEEE
T ss_pred HHhcCCCcEEEEEECCCc------hhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-CC--CeecCEEEE
Confidence 344444567999999997 699854 4555555 677766655544443332222 23 378999854
No 222
>PRK14295 chaperone protein DnaJ; Provisional
Probab=79.93 E-value=2 Score=42.17 Aligned_cols=38 Identities=32% Similarity=0.790 Sum_probs=29.9
Q ss_pred CCCCCCCccce-----------EeCCCCCCcceeeeCCCCcceeCCCCCcCceee
Q 048504 227 FVCGSCGDVRF-----------VPCGNCSGSRKVFDEADGVPKRCLECNENGLIR 270 (277)
Q Consensus 227 ~~C~~CGg~rf-----------VpC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLvr 270 (277)
..|..|+|.+. .+|+.|+|.-+++. .+|..|+..|.++
T Consensus 184 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~~~ 232 (389)
T PRK14295 184 RVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD------DPCLVCKGSGRAK 232 (389)
T ss_pred cCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec------cCCCCCCCCceEe
Confidence 57999998765 47999999988753 3599999888763
No 223
>PRK14300 chaperone protein DnaJ; Provisional
Probab=79.92 E-value=1.9 Score=42.00 Aligned_cols=37 Identities=24% Similarity=0.739 Sum_probs=28.5
Q ss_pred CCCCCCCccceE-----------eCCCCCCcceeeeCCCCcceeCCCCCcCcee
Q 048504 227 FVCGSCGDVRFV-----------PCGNCSGSRKVFDEADGVPKRCLECNENGLI 269 (277)
Q Consensus 227 ~~C~~CGg~rfV-----------pC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLv 269 (277)
..|..|.|.+++ +|+.|+|.-++.. .+|+.|+-.|.+
T Consensus 163 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v 210 (372)
T PRK14300 163 TTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIK------NPCKKCHGMGRY 210 (372)
T ss_pred ccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeC------CCCCCCCCceEE
Confidence 578999888765 5999999877643 458999888875
No 224
>PF15616 TerY-C: TerY-C metal binding domain
Probab=79.85 E-value=2.5 Score=36.14 Aligned_cols=39 Identities=28% Similarity=0.628 Sum_probs=30.0
Q ss_pred CCCCCCCcc-ceEeCCCCCCcceeeeCCCCcceeCCCCCcCcee
Q 048504 227 FVCGSCGDV-RFVPCGNCSGSRKVFDEADGVPKRCLECNENGLI 269 (277)
Q Consensus 227 ~~C~~CGg~-rfVpC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLv 269 (277)
..|.-||.. .|+.| .|+ |++--++.....||+|..+|..
T Consensus 78 PgCP~CGn~~~fa~C-~CG---kl~Ci~g~~~~~CPwCg~~g~~ 117 (131)
T PF15616_consen 78 PGCPHCGNQYAFAVC-GCG---KLFCIDGEGEVTCPWCGNEGSF 117 (131)
T ss_pred CCCCCCcChhcEEEe-cCC---CEEEeCCCCCEECCCCCCeeee
Confidence 589999998 89999 676 6664333448999999988754
No 225
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=79.83 E-value=1.5 Score=39.52 Aligned_cols=26 Identities=19% Similarity=0.677 Sum_probs=22.3
Q ss_pred CCCCCCCCccceEe-----CCCCCCcceeee
Q 048504 226 GFVCGSCGDVRFVP-----CGNCSGSRKVFD 251 (277)
Q Consensus 226 ~~~C~~CGg~rfVp-----C~~C~GS~Kv~~ 251 (277)
...|..|+|.++++ |+.|+|+-++-.
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~ 129 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRP 129 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEee
Confidence 47999999999886 999999988744
No 226
>PRK14298 chaperone protein DnaJ; Provisional
Probab=79.60 E-value=1.8 Score=42.29 Aligned_cols=38 Identities=32% Similarity=0.814 Sum_probs=29.5
Q ss_pred CCCCCCCccceE---------------eCCCCCCcceeeeCCCCcceeCCCCCcCceee
Q 048504 227 FVCGSCGDVRFV---------------PCGNCSGSRKVFDEADGVPKRCLECNENGLIR 270 (277)
Q Consensus 227 ~~C~~CGg~rfV---------------pC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLvr 270 (277)
..|..|.|.+.+ +|+.|+|.-++.. .+|+.|+-.|.+.
T Consensus 159 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v~ 211 (377)
T PRK14298 159 KRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIE------SPCPVCSGTGKVR 211 (377)
T ss_pred CcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccC------CCCCCCCCccEEE
Confidence 579999988653 6999999976642 4599999888763
No 227
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=79.54 E-value=4.1 Score=33.82 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=28.9
Q ss_pred hhHHHHHHHHH----hC--CCeEEEEECCCCHHHH---HHHHHHhCCCCCCCcEEEe
Q 048504 146 EDCYAVRMIFR----GF--RVWVDERDVSMDSAYK---KELQCVFGGKNVTLPQVFI 193 (277)
Q Consensus 146 ~~C~~Vk~iL~----~~--gV~y~ErDVs~d~~~r---eELke~lG~~~~tvPqVFI 193 (277)
+.|+.+.-+|+ .+ ++.|..+|+...+.++ .+++...+-. ..+|.+.+
T Consensus 41 ~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~-~~iPT~~~ 96 (119)
T cd02952 41 PDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLT-TGVPTLLR 96 (119)
T ss_pred HhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcc-cCCCEEEE
Confidence 69997766554 33 4889999997654222 3444444331 27998854
No 228
>PRK14281 chaperone protein DnaJ; Provisional
Probab=79.28 E-value=2 Score=42.18 Aligned_cols=38 Identities=29% Similarity=0.734 Sum_probs=29.8
Q ss_pred CCCCCCCccceE---------------eCCCCCCcceeeeCCCCcceeCCCCCcCceee
Q 048504 227 FVCGSCGDVRFV---------------PCGNCSGSRKVFDEADGVPKRCLECNENGLIR 270 (277)
Q Consensus 227 ~~C~~CGg~rfV---------------pC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLvr 270 (277)
..|..|+|.+.+ +|+.|+|.-++.. .+|..|+-.|.+.
T Consensus 180 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v~ 232 (397)
T PRK14281 180 ETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK------DRCPACYGEGIKQ 232 (397)
T ss_pred ccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC------CCCCCCCCCccEe
Confidence 479999987643 6999999988753 3599999888763
No 229
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=79.08 E-value=2.1 Score=41.16 Aligned_cols=38 Identities=26% Similarity=0.783 Sum_probs=29.5
Q ss_pred CCCCCCCccce---------------EeCCCCCCcceeeeCCCCcceeCCCCCcCceee
Q 048504 227 FVCGSCGDVRF---------------VPCGNCSGSRKVFDEADGVPKRCLECNENGLIR 270 (277)
Q Consensus 227 ~~C~~CGg~rf---------------VpC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLvr 270 (277)
..|..|+|.+. .+|+.|+|.-++.. ..|..|+-.|.+.
T Consensus 161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v~ 213 (354)
T TIGR02349 161 KTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIK------EPCSTCKGKGRVK 213 (354)
T ss_pred ccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecC------CCCCCCCCCcEec
Confidence 57999998753 46999999987753 2599999888764
No 230
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=78.72 E-value=7.3 Score=35.43 Aligned_cols=67 Identities=19% Similarity=0.273 Sum_probs=50.4
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHH
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKS 206 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~ 206 (277)
..++.-..+| .+..+|.+|.-.||+|++.-+.+... ..+++..+.- .++|.+-|||..|.-.-.+.+
T Consensus 4 ykL~Yf~~RG------~ae~iR~lf~~a~v~fEd~r~~~~~~-w~~~K~~~pf--gqlP~l~vDg~~i~QS~AI~R 70 (206)
T KOG1695|consen 4 YKLTYFNIRG------LAEPIRLLFAYAGVSFEDKRITMEDA-WEELKDKMPF--GQLPVLEVDGKKLVQSRAILR 70 (206)
T ss_pred eEEEecCcch------hHHHHHHHHHhcCCCcceeeeccccc-hhhhcccCCC--CCCCEEeECCEeeccHHHHHH
Confidence 3455555554 89999999999999999999987654 3445554432 679999999998887666655
No 231
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=78.56 E-value=16 Score=33.36 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=22.4
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHhC---CCeEEEE
Q 048504 127 TEDRIVVYLTSLRGIRRTFEDCYAVRMIFRGF---RVWVDER 165 (277)
Q Consensus 127 ~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~---gV~y~Er 165 (277)
+...|++|+=. .||||+++...|..+ +|.+..+
T Consensus 107 ~k~~I~vFtDp------~CpyCkkl~~~l~~~~~~~v~v~~~ 142 (232)
T PRK10877 107 EKHVITVFTDI------TCGYCHKLHEQMKDYNALGITVRYL 142 (232)
T ss_pred CCEEEEEEECC------CChHHHHHHHHHHHHhcCCeEEEEE
Confidence 34457777765 468999988888764 4665443
No 232
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=78.12 E-value=6.5 Score=34.97 Aligned_cols=75 Identities=13% Similarity=0.068 Sum_probs=44.9
Q ss_pred cEEE-EEecCCCCCCCChhHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE--EeCCEEEech
Q 048504 130 RIVV-YLTSLRGIRRTFEDCYAVRMIFRGF-----RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQV--FIRGKHVGNA 201 (277)
Q Consensus 130 kVVL-YttSlcgiR~Tc~~C~~Vk~iL~~~-----gV~y~ErDVs~d~~~reELke~lG~~~~tvPqV--FI~G~~IGG~ 201 (277)
.||| |+.+| |+.|+.+..+|+.+ .|.|..+|++.. .+.++. ..+|.| |-||+.|+-.
T Consensus 104 ~VVV~Fya~w------c~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~-------~~~~~i--~~lPTlliyk~G~~v~~i 168 (192)
T cd02988 104 WVVVHLYKDG------IPLCRLLNQHLSELARKFPDTKFVKIISTQC-------IPNYPD--KNLPTILVYRNGDIVKQF 168 (192)
T ss_pred EEEEEEECCC------CchHHHHHHHHHHHHHHCCCCEEEEEEhHHh-------HhhCCC--CCCCEEEEEECCEEEEEE
Confidence 4655 55555 57999988888763 477888887531 244544 789988 5588755433
Q ss_pred hHHHHH----HhhccHHHHhcC
Q 048504 202 DVLKSM----YETGELARVLDG 219 (277)
Q Consensus 202 del~~L----~EsGeL~klL~~ 219 (277)
--+..+ ....+|+.+|..
T Consensus 169 vG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 169 IGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred eCchhhCCCCCCHHHHHHHHHh
Confidence 222222 122456666643
No 233
>PF13728 TraF: F plasmid transfer operon protein
Probab=77.79 E-value=5.3 Score=36.11 Aligned_cols=66 Identities=11% Similarity=0.120 Sum_probs=46.0
Q ss_pred ccccCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHH----hCCCeEEEEECCCC--HH---H--HHHHHHHhCCCCCCC
Q 048504 120 SSIRLPGTEDRIVVYLTSLRGIRRTFEDCYAVRMIFR----GFRVWVDERDVSMD--SA---Y--KKELQCVFGGKNVTL 188 (277)
Q Consensus 120 ~~i~~~~~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~----~~gV~y~ErDVs~d--~~---~--reELke~lG~~~~tv 188 (277)
..|........+++|+.+. |++|+...-+|+ .+|+.+..++++.. +. . -..+.+.+|- ..+
T Consensus 113 ~~l~~la~~~gL~~F~~~~------C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v--~~~ 184 (215)
T PF13728_consen 113 KALKQLAQKYGLFFFYRSD------CPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGV--KVT 184 (215)
T ss_pred HHHHHHhhCeEEEEEEcCC------CchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCC--CcC
Confidence 5666677778899999885 579987766665 57899888888631 11 1 1345556765 789
Q ss_pred cEEEe
Q 048504 189 PQVFI 193 (277)
Q Consensus 189 PqVFI 193 (277)
|.+|+
T Consensus 185 Pal~L 189 (215)
T PF13728_consen 185 PALFL 189 (215)
T ss_pred CEEEE
Confidence 99986
No 234
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=77.78 E-value=5.9 Score=30.29 Aligned_cols=54 Identities=19% Similarity=0.264 Sum_probs=34.5
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhC------CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEe
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGF------RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFI 193 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~------gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI 193 (277)
-+|.|.++|| +.|+.+...|+.. .+.+..+|++.+. ..++.+.++- ..+|.+++
T Consensus 21 ~lv~f~a~wC------~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~--~~~~~~~~~i--~~~Pt~~~ 80 (109)
T cd03002 21 TLVEFYAPWC------GHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK--NKPLCGKYGV--QGFPTLKV 80 (109)
T ss_pred EEEEEECCCC------HHHHhhChHHHHHHHHhcCCceEEEEecCccc--cHHHHHHcCC--CcCCEEEE
Confidence 4666777765 7999877666543 3566777877632 1345555654 78998854
No 235
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=77.56 E-value=14 Score=30.43 Aligned_cols=67 Identities=24% Similarity=0.202 Sum_probs=46.2
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHhC------CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEe--CCEEE
Q 048504 127 TEDRIVVYLTSLRGIRRTFEDCYAVRMIFRGF------RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFI--RGKHV 198 (277)
Q Consensus 127 ~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~------gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI--~G~~I 198 (277)
.+.+|+||-=|+ +|+-...|..-|+.. .+++..+||-.++.+=.++.+.+|-. -.=||+++ ||+.|
T Consensus 18 ~~~~~~iFKHSt-----~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~-HeSPQ~ili~~g~~v 91 (105)
T PF11009_consen 18 KEKPVLIFKHST-----RCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVK-HESPQVILIKNGKVV 91 (105)
T ss_dssp --SEEEEEEE-T-----T-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT-----SSEEEEEETTEEE
T ss_pred ccCcEEEEEeCC-----CChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCC-cCCCcEEEEECCEEE
Confidence 366799998886 588888887777652 39999999999999999999999863 66799854 88766
Q ss_pred e
Q 048504 199 G 199 (277)
Q Consensus 199 G 199 (277)
=
T Consensus 92 ~ 92 (105)
T PF11009_consen 92 W 92 (105)
T ss_dssp E
T ss_pred E
Confidence 3
No 236
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=77.55 E-value=2.1 Score=38.89 Aligned_cols=63 Identities=16% Similarity=0.129 Sum_probs=47.2
Q ss_pred CChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEE-eCCEEEechhHHHHHHhh
Q 048504 144 TFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVF-IRGKHVGNADVLKSMYET 210 (277)
Q Consensus 144 Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVF-I~G~~IGG~del~~L~Es 210 (277)
.||+|.+||+++-=++|++++.-+..|.+. -=-++.|+ ..||.+- =+|++++-.-|+++..+.
T Consensus 8 HCPfcvrarmi~Gl~nipve~~vL~nDDe~--Tp~rmiG~--KqVPiL~Kedg~~m~ESlDIV~y~d~ 71 (215)
T COG2999 8 HCPFCVRARMIFGLKNIPVELHVLLNDDEE--TPIRMIGQ--KQVPILQKEDGRAMPESLDIVHYVDE 71 (215)
T ss_pred cChHHHHHHHHhhccCCChhhheeccCccc--Chhhhhcc--cccceEEccccccchhhhHHHHHHHH
Confidence 589999999999999999987666555331 12345576 7899885 588999988888775443
No 237
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=76.92 E-value=11 Score=31.39 Aligned_cols=59 Identities=20% Similarity=0.294 Sum_probs=38.9
Q ss_pred CCcEEE-EEecCCCCCCCChhHHHHHHHHHhC-----C-CeEEEEECCCCHHHHHHHHHHhCCCCCCCcE--EEeCCEEE
Q 048504 128 EDRIVV-YLTSLRGIRRTFEDCYAVRMIFRGF-----R-VWVDERDVSMDSAYKKELQCVFGGKNVTLPQ--VFIRGKHV 198 (277)
Q Consensus 128 ~~kVVL-YttSlcgiR~Tc~~C~~Vk~iL~~~-----g-V~y~ErDVs~d~~~reELke~lG~~~~tvPq--VFI~G~~I 198 (277)
...||| |+.+| |+.|+.+-.+|+++ + +.|..+||+..+++. +..+- ...|. +|-+|+||
T Consensus 14 ~klVVVdF~a~W------C~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva----~~y~I--~amPtfvffkngkh~ 81 (114)
T cd02986 14 EKVLVLRFGRDE------DAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYT----QYFDI--SYIPSTIFFFNGQHM 81 (114)
T ss_pred CCEEEEEEeCCC------ChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHH----HhcCc--eeCcEEEEEECCcEE
Confidence 334444 55555 57999998888764 3 778899999776543 33442 23554 46789887
No 238
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=76.14 E-value=13 Score=34.01 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=38.3
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhC------CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE--EeCCEEE
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGF------RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQV--FIRGKHV 198 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~------gV~y~ErDVs~d~~~reELke~lG~~~~tvPqV--FI~G~~I 198 (277)
+|.|+++|| +.|+.+...++.. .|.+..+|++.++ ++.+..+- ..+|.+ |-+|+.+
T Consensus 56 lV~FyApWC------~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~----~l~~~~~I--~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 56 FVKFYAPWC------SHCRKMAPAWERLAKALKGQVNVADLDATRAL----NLAKRFAI--KGYPTLLLFDKGKMY 119 (224)
T ss_pred EEEEECCCC------hHHHHHHHHHHHHHHHcCCCeEEEEecCcccH----HHHHHcCC--CcCCEEEEEECCEEE
Confidence 666777775 7999888877652 2667777877664 45556654 688977 4577755
No 239
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=75.84 E-value=8.8 Score=31.22 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=37.7
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhC------CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE--EeCCE
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGF------RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQV--FIRGK 196 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~------gV~y~ErDVs~d~~~reELke~lG~~~~tvPqV--FI~G~ 196 (277)
-+|.|+.+|| +.|+.+.-.|+.. .|.+-.+|++.+... ..+..+- ..+|.| |.+|+
T Consensus 32 vlV~FyA~WC------~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l---~~~~~~I--~~~PTl~lf~~g~ 95 (113)
T cd03006 32 SLVMYYAPWD------AQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGK---CRKQKHF--FYFPVIHLYYRSR 95 (113)
T ss_pred EEEEEECCCC------HHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHH---HHHhcCC--cccCEEEEEECCc
Confidence 3777888886 6999888877753 267788898866532 2234443 578877 56665
No 240
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=75.23 E-value=7.9 Score=29.06 Aligned_cols=56 Identities=16% Similarity=0.253 Sum_probs=34.0
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHh--------CCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE--EeCCE
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRG--------FRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQV--FIRGK 196 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~--------~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqV--FI~G~ 196 (277)
+|.|+++|| +.|+.+...|+. ..+.+..+|++.+ .-.++.+.+|- ..+|.+ |-+|+
T Consensus 21 ~v~f~a~wC------~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~i--~~~Pt~~~~~~g~ 86 (104)
T cd02997 21 LVMFYAPWC------GHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP--EHDALKEEYNV--KGFPTFKYFENGK 86 (104)
T ss_pred EEEEECCCC------HHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC--ccHHHHHhCCC--ccccEEEEEeCCC
Confidence 666777765 799977644432 2356777888763 11344555654 678887 34555
No 241
>PRK05580 primosome assembly protein PriA; Validated
Probab=75.19 E-value=2.7 Score=44.16 Aligned_cols=47 Identities=30% Similarity=0.671 Sum_probs=35.9
Q ss_pred CCCCCCCCccceEeCCCCCCcceeeeCCCCcceeCCCCCcCc--eeeCCCCCC
Q 048504 226 GFVCGSCGDVRFVPCGNCSGSRKVFDEADGVPKRCLECNENG--LIRCPDCCS 276 (277)
Q Consensus 226 ~~~C~~CGg~rfVpC~~C~GS~Kv~~~~~~~~~rC~~CNEnG--LvrCp~C~~ 276 (277)
...|..||-. +.|+.|+++...+. . ...++|..|+-.- --+||.|-+
T Consensus 381 ~~~C~~Cg~~--~~C~~C~~~l~~h~-~-~~~l~Ch~Cg~~~~~~~~Cp~Cg~ 429 (679)
T PRK05580 381 FLLCRDCGWV--AECPHCDASLTLHR-F-QRRLRCHHCGYQEPIPKACPECGS 429 (679)
T ss_pred ceEhhhCcCc--cCCCCCCCceeEEC-C-CCeEECCCCcCCCCCCCCCCCCcC
Confidence 4689999854 57999999865544 2 4579999998765 358999965
No 242
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=74.08 E-value=27 Score=30.25 Aligned_cols=35 Identities=14% Similarity=0.099 Sum_probs=23.5
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHH--hCCCeEEEEEC
Q 048504 127 TEDRIVVYLTSLRGIRRTFEDCYAVRMIFR--GFRVWVDERDV 167 (277)
Q Consensus 127 ~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~--~~gV~y~ErDV 167 (277)
+...|++|+-. .||+|+++...|. ..+|.+..+-+
T Consensus 77 ~~~~i~~f~D~------~Cp~C~~~~~~l~~~~~~v~v~~~~~ 113 (197)
T cd03020 77 GKRVVYVFTDP------DCPYCRKLEKELKPNADGVTVRIFPV 113 (197)
T ss_pred CCEEEEEEECC------CCccHHHHHHHHhhccCceEEEEEEc
Confidence 34566777765 4689999998887 34566554444
No 243
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=73.72 E-value=13 Score=28.68 Aligned_cols=53 Identities=19% Similarity=0.382 Sum_probs=32.5
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHh----C---C--CeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEE-eCC
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRG----F---R--VWVDERDVSMDSAYKKELQCVFGGKNVTLPQVF-IRG 195 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~----~---g--V~y~ErDVs~d~~~reELke~lG~~~~tvPqVF-I~G 195 (277)
+|.|.++| |+.|++....|+. + + +.+..+|+..++ ++.+..+- .++|.++ ++|
T Consensus 19 lv~f~a~w------C~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~I--~~~Pt~~l~~~ 81 (104)
T cd03000 19 LVDFYAPW------CGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS----SIASEFGV--RGYPTIKLLKG 81 (104)
T ss_pred EEEEECCC------CHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH----hHHhhcCC--ccccEEEEEcC
Confidence 55556665 5799976666543 2 3 556677877654 34445554 7899883 444
No 244
>PRK14287 chaperone protein DnaJ; Provisional
Probab=73.62 E-value=3 Score=40.64 Aligned_cols=38 Identities=29% Similarity=0.858 Sum_probs=29.7
Q ss_pred CCCCCCCccceE---------------eCCCCCCcceeeeCCCCcceeCCCCCcCceee
Q 048504 227 FVCGSCGDVRFV---------------PCGNCSGSRKVFDEADGVPKRCLECNENGLIR 270 (277)
Q Consensus 227 ~~C~~CGg~rfV---------------pC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLvr 270 (277)
..|..|.|.+.+ +|+.|+|.-++.. ..|..|+-.|.+.
T Consensus 156 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v~ 208 (371)
T PRK14287 156 ETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIK------QKCATCGGKGKVR 208 (371)
T ss_pred cccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcccc------ccCCCCCCeeEEe
Confidence 579999988653 6999999987653 4599999888763
No 245
>PF11331 DUF3133: Protein of unknown function (DUF3133); InterPro: IPR021480 This eukaryotic family of proteins has no known function.
Probab=73.32 E-value=1.7 Score=30.91 Aligned_cols=34 Identities=26% Similarity=0.525 Sum_probs=24.7
Q ss_pred CccceEeCCCCCCcceeee-----CCCCcceeCCCCCcC
Q 048504 233 GDVRFVPCGNCSGSRKVFD-----EADGVPKRCLECNEN 266 (277)
Q Consensus 233 Gg~rfVpC~~C~GS~Kv~~-----~~~~~~~rC~~CNEn 266 (277)
||.-||.|.+|..--.+.. .+....+||..|.|-
T Consensus 2 GGAPFv~C~~C~~lLqlP~~~~~~~k~~~klrCGaCs~v 40 (46)
T PF11331_consen 2 GGAPFVVCSSCFELLQLPAKFSLSKKNQQKLRCGACSEV 40 (46)
T ss_pred CCCCEeECccHHHHHcCCCccCCCccceeEEeCCCCcee
Confidence 7889999999987655422 222457999999874
No 246
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=72.98 E-value=2 Score=42.04 Aligned_cols=52 Identities=25% Similarity=0.588 Sum_probs=35.1
Q ss_pred CCCCCCCCCccc--------eEeCCCCCCc--ceeeeC------CCCcceeCCCCCcCceeeCCCCCC
Q 048504 225 PGFVCGSCGDVR--------FVPCGNCSGS--RKVFDE------ADGVPKRCLECNENGLIRCPDCCS 276 (277)
Q Consensus 225 ~~~~C~~CGg~r--------fVpC~~C~GS--~Kv~~~------~~~~~~rC~~CNEnGLvrCp~C~~ 276 (277)
+..+|.+|-|.+ -+-|+.|.|- +|+=.. .+.+.++|+.|.--|++.|..|..
T Consensus 197 G~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C~TC~g 264 (406)
T KOG2813|consen 197 GAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPCTTCSG 264 (406)
T ss_pred CceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCcccccccC
Confidence 357999998888 7889999991 222110 123467777777777777777753
No 247
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=72.40 E-value=14 Score=26.64 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=21.6
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhC------CCeEEEEECC
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGF------RVWVDERDVS 168 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~------gV~y~ErDVs 168 (277)
|++|+... ||+|..+...|+.. ++.+..+.+.
T Consensus 1 i~~f~d~~------Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDPL------CPYCYLFEPELEKLLYADDGGVRVVYRPFP 38 (98)
T ss_pred CeEEECCC------CHhHHhhhHHHHHHHhhcCCcEEEEEeccc
Confidence 45677664 68999888887663 4666666553
No 248
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=72.00 E-value=18 Score=37.26 Aligned_cols=56 Identities=13% Similarity=0.198 Sum_probs=35.8
Q ss_pred cEEE-EEecCCCCCCCChhHHHHHHHH-------Hh-CCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEe
Q 048504 130 RIVV-YLTSLRGIRRTFEDCYAVRMIF-------RG-FRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFI 193 (277)
Q Consensus 130 kVVL-YttSlcgiR~Tc~~C~~Vk~iL-------~~-~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI 193 (277)
.|+| |+.+| |+.|+...... +. .++.+..+|++.+.....++.+..+- ..+|.+++
T Consensus 476 ~VlVdF~A~W------C~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v--~g~Pt~~~ 540 (571)
T PRK00293 476 PVMLDLYADW------CVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNV--LGLPTILF 540 (571)
T ss_pred cEEEEEECCc------CHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCC--CCCCEEEE
Confidence 4555 55555 57998765432 11 35778889998765444566667765 67898843
No 249
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=71.83 E-value=3.2 Score=37.34 Aligned_cols=31 Identities=23% Similarity=0.595 Sum_probs=25.1
Q ss_pred ceEeCCCCCCcceeeeCCCCcceeCCCCCcCceee
Q 048504 236 RFVPCGNCSGSRKVFDEADGVPKRCLECNENGLIR 270 (277)
Q Consensus 236 rfVpC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLvr 270 (277)
+-..|+.|+|+-+++... ..|+.|+-.|-++
T Consensus 98 ~~~~C~~C~G~G~~i~~~----~~C~~C~G~G~v~ 128 (186)
T TIGR02642 98 NSCKCPRCRGTGLIQRRQ----RECDTCAGTGRFR 128 (186)
T ss_pred cCCcCCCCCCeeEEecCC----CCCCCCCCccEEe
Confidence 377899999998887632 6899999988764
No 250
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=71.50 E-value=14 Score=28.88 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=34.2
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHHh-------CCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEE
Q 048504 129 DRIVVYLTSLRGIRRTFEDCYAVRMIFRG-------FRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVF 192 (277)
Q Consensus 129 ~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~-------~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVF 192 (277)
.-+|.|.++|| +.|+++...|+. .++.+-.+|++.+.. ....+..+. ..+|.++
T Consensus 23 ~vlv~f~a~wC------~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~--~~~~~~~~v--~~~Pti~ 83 (109)
T cd02993 23 STLVVLYAPWC------PFCQAMEASYEELAEKLAGSNVKVAKFNADGEQR--EFAKEELQL--KSFPTIL 83 (109)
T ss_pred CEEEEEECCCC------HHHHHHhHHHHHHHHHhccCCeEEEEEECCccch--hhHHhhcCC--CcCCEEE
Confidence 34677777775 799988877754 246777888876311 112334443 6899874
No 251
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=71.49 E-value=21 Score=33.24 Aligned_cols=83 Identities=13% Similarity=0.059 Sum_probs=57.0
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhH---HH
Q 048504 129 DRIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADV---LK 205 (277)
Q Consensus 129 ~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~de---l~ 205 (277)
++=|.|-=...+....-++-.+++..|+.+|+.+.+++++..+ .+++...+.. .+..||||-.. |+
T Consensus 32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~--~~~Ie~~l~~---------~d~IyVgGGNTF~LL~ 100 (224)
T COG3340 32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPP--LAAIENKLMK---------ADIIYVGGGNTFNLLQ 100 (224)
T ss_pred CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCC--HHHHHHhhhh---------ccEEEECCchHHHHHH
Confidence 3444444444444444478899999999999999999999764 3556665543 35568887655 56
Q ss_pred HHHhhccHHHHhcCCCC
Q 048504 206 SMYETGELARVLDGFPR 222 (277)
Q Consensus 206 ~L~EsGeL~klL~~~~~ 222 (277)
.|.|.|-++-+.+.+..
T Consensus 101 ~lke~gld~iIr~~vk~ 117 (224)
T COG3340 101 ELKETGLDDIIRERVKA 117 (224)
T ss_pred HHHHhCcHHHHHHHHHc
Confidence 67888877777665444
No 252
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=71.31 E-value=16 Score=30.26 Aligned_cols=64 Identities=14% Similarity=0.003 Sum_probs=37.6
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHH-HHHh--------CCCeEEEEECCCCHHHHHHHHH----HhCCCCCCCcEEE-e-
Q 048504 129 DRIVVYLTSLRGIRRTFEDCYAVRM-IFRG--------FRVWVDERDVSMDSAYKKELQC----VFGGKNVTLPQVF-I- 193 (277)
Q Consensus 129 ~kVVLYttSlcgiR~Tc~~C~~Vk~-iL~~--------~gV~y~ErDVs~d~~~reELke----~lG~~~~tvPqVF-I- 193 (277)
.+|+|+..+ ..|++|+.+.. .|.. .++-+..+|++..++..+.+.+ ..|. ..+|.+. +
T Consensus 16 KpVll~f~a-----~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~--~G~Pt~vfl~ 88 (124)
T cd02955 16 KPIFLSIGY-----STCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQ--GGWPLNVFLT 88 (124)
T ss_pred CeEEEEEcc-----CCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCC--CCCCEEEEEC
Confidence 346665544 24689997754 3322 2455677888777665544433 3343 5788874 4
Q ss_pred -CCEEEe
Q 048504 194 -RGKHVG 199 (277)
Q Consensus 194 -~G~~IG 199 (277)
+|+.|-
T Consensus 89 ~~G~~~~ 95 (124)
T cd02955 89 PDLKPFF 95 (124)
T ss_pred CCCCEEe
Confidence 577763
No 253
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=71.12 E-value=10 Score=34.12 Aligned_cols=33 Identities=21% Similarity=0.488 Sum_probs=21.5
Q ss_pred ceEeCCCCCCcce-eeeCCCCcceeCCCCCcCce
Q 048504 236 RFVPCGNCSGSRK-VFDEADGVPKRCLECNENGL 268 (277)
Q Consensus 236 rfVpC~~C~GS~K-v~~~~~~~~~rC~~CNEnGL 268 (277)
.||.|+.|+-.-- +..++...+++|-+|..-+-
T Consensus 97 ~yV~C~~C~~pdT~l~k~~~~~~l~C~aCGa~~~ 130 (201)
T PRK12336 97 EYVICSECGLPDTRLVKEDRVLMLRCDACGAHRP 130 (201)
T ss_pred heEECCCCCCCCcEEEEcCCeEEEEcccCCCCcc
Confidence 4888888887743 33333334788888876543
No 254
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.86 E-value=28 Score=28.64 Aligned_cols=75 Identities=13% Similarity=0.156 Sum_probs=46.5
Q ss_pred CCCcEEEEEecCCCCCCCChhH------HHHHHHHHh--------CCCeEEEEECCCCH--HHHHHHHHHhCCCCCCCcE
Q 048504 127 TEDRIVVYLTSLRGIRRTFEDC------YAVRMIFRG--------FRVWVDERDVSMDS--AYKKELQCVFGGKNVTLPQ 190 (277)
Q Consensus 127 ~~~kVVLYttSlcgiR~Tc~~C------~~Vk~iL~~--------~gV~y~ErDVs~d~--~~reELke~lG~~~~tvPq 190 (277)
.+.+++||.... .|.-| +..-.+|+. +...|..+||..++ ++-.++.+..-+..--.|.
T Consensus 3 ~~~~l~VyGae~-----iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPl 77 (106)
T COG4837 3 NEAKLVVYGAEV-----ICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPL 77 (106)
T ss_pred ceeEEEEecchh-----hhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceE
Confidence 455788888763 35555 356666664 34557899997543 3444444444332356899
Q ss_pred EEeCCEEEec-hhHHHH
Q 048504 191 VFIRGKHVGN-ADVLKS 206 (277)
Q Consensus 191 VFI~G~~IGG-~del~~ 206 (277)
|.|+|++|+. .-.+++
T Consensus 78 ivvedeiVaeGnprlKd 94 (106)
T COG4837 78 IVVEDEIVAEGNPRLKD 94 (106)
T ss_pred EEEcceEeecCCchHHH
Confidence 9999999964 334443
No 255
>PRK14283 chaperone protein DnaJ; Provisional
Probab=70.53 E-value=5.6 Score=38.77 Aligned_cols=37 Identities=32% Similarity=0.887 Sum_probs=26.5
Q ss_pred CCCCCCCccceE---------------eCCCCCCcceeeeCCCCcceeCCCCCcCcee
Q 048504 227 FVCGSCGDVRFV---------------PCGNCSGSRKVFDEADGVPKRCLECNENGLI 269 (277)
Q Consensus 227 ~~C~~CGg~rfV---------------pC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLv 269 (277)
..|..|.|.+.+ +|+.|+|.-+.. ...|..|+-.|.+
T Consensus 164 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------~~~C~~C~G~g~v 215 (378)
T PRK14283 164 KTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV------EKPCSNCHGKGVV 215 (378)
T ss_pred ccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec------CCCCCCCCCceee
Confidence 468888887554 588888886663 2458888877765
No 256
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.46 E-value=9.7 Score=36.83 Aligned_cols=62 Identities=16% Similarity=0.302 Sum_probs=43.6
Q ss_pred CCcEEEEE-ecCCCCCCCChhHHHHHHHHHhC------CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE--EeCCEEE
Q 048504 128 EDRIVVYL-TSLRGIRRTFEDCYAVRMIFRGF------RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQV--FIRGKHV 198 (277)
Q Consensus 128 ~~kVVLYt-tSlcgiR~Tc~~C~~Vk~iL~~~------gV~y~ErDVs~d~~~reELke~lG~~~~tvPqV--FI~G~~I 198 (277)
..+|+||+ .+| |+.|....-+|+.+ ++..-.+|++.++.+ ...+|- .++|.| |++|+.|
T Consensus 43 ~~PVlV~fWap~------~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~v----Aaqfgi--qsIPtV~af~dGqpV 110 (304)
T COG3118 43 EVPVLVDFWAPW------CGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMV----AAQFGV--QSIPTVYAFKDGQPV 110 (304)
T ss_pred CCCeEEEecCCC------CchHHHHHHHHHHHHHHhCCceEEEEecCCcchhH----HHHhCc--CcCCeEEEeeCCcCc
Confidence 44555554 555 46999999888864 244567777777654 455665 788988 8999998
Q ss_pred ech
Q 048504 199 GNA 201 (277)
Q Consensus 199 GG~ 201 (277)
-|+
T Consensus 111 dgF 113 (304)
T COG3118 111 DGF 113 (304)
T ss_pred ccc
Confidence 776
No 257
>PRK14291 chaperone protein DnaJ; Provisional
Probab=70.43 E-value=4.4 Score=39.64 Aligned_cols=36 Identities=33% Similarity=0.867 Sum_probs=27.0
Q ss_pred CCCCCCCccceE-----------eCCCCCCcceeeeCCCCcceeCCCCCcCcee
Q 048504 227 FVCGSCGDVRFV-----------PCGNCSGSRKVFDEADGVPKRCLECNENGLI 269 (277)
Q Consensus 227 ~~C~~CGg~rfV-----------pC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLv 269 (277)
..|..|.|.+.+ +|+.|+|.-.+ ...|..|+-.|.+
T Consensus 174 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~-------~~~C~~C~G~g~v 220 (382)
T PRK14291 174 KVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL-------REPCSKCNGRGLV 220 (382)
T ss_pred ccCCCCCCceEEEEecceEEEEecCCCCCCceEE-------ccCCCCCCCCceE
Confidence 578899888765 69999998732 2468999887765
No 258
>PRK14292 chaperone protein DnaJ; Provisional
Probab=70.30 E-value=4.4 Score=39.31 Aligned_cols=38 Identities=26% Similarity=0.711 Sum_probs=28.2
Q ss_pred CCCCCCCCccceE---------------eCCCCCCcceeeeCCCCcceeCCCCCcCcee
Q 048504 226 GFVCGSCGDVRFV---------------PCGNCSGSRKVFDEADGVPKRCLECNENGLI 269 (277)
Q Consensus 226 ~~~C~~CGg~rfV---------------pC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLv 269 (277)
...|..|+|.+.+ +|+.|+|.-+.. ...|..|+..|.+
T Consensus 157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------~~~C~~C~G~g~v 209 (371)
T PRK14292 157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII------TDPCTVCRGRGRT 209 (371)
T ss_pred CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec------CCCCCCCCCceEE
Confidence 3578888887643 599999987664 3569999887765
No 259
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=69.55 E-value=4.1 Score=27.65 Aligned_cols=24 Identities=33% Similarity=0.758 Sum_probs=16.4
Q ss_pred eCCCCCCcceeeeCCCCcceeCCCC
Q 048504 239 PCGNCSGSRKVFDEADGVPKRCLEC 263 (277)
Q Consensus 239 pC~~C~GS~Kv~~~~~~~~~rC~~C 263 (277)
.|+.|+.+.-+++ ...+.+-|+.|
T Consensus 2 ~Cp~Cg~~~~~~D-~~~g~~vC~~C 25 (43)
T PF08271_consen 2 KCPNCGSKEIVFD-PERGELVCPNC 25 (43)
T ss_dssp SBTTTSSSEEEEE-TTTTEEEETTT
T ss_pred CCcCCcCCceEEc-CCCCeEECCCC
Confidence 4888888763344 33447789988
No 260
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=68.90 E-value=4.3 Score=26.53 Aligned_cols=28 Identities=39% Similarity=0.810 Sum_probs=19.9
Q ss_pred EeCCCCCCcceeeeC---CCCcceeCCCCCc
Q 048504 238 VPCGNCSGSRKVFDE---ADGVPKRCLECNE 265 (277)
Q Consensus 238 VpC~~C~GS~Kv~~~---~~~~~~rC~~CNE 265 (277)
+.|+.|+...++-.+ ..+..++|+.|..
T Consensus 3 ~~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~ 33 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLGANGGKVRCGKCGH 33 (38)
T ss_pred EECCCCCCEEEeCHHHcCCCCCEEECCCCCC
Confidence 679999998887543 2334788888865
No 261
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=68.87 E-value=4.5 Score=32.31 Aligned_cols=60 Identities=8% Similarity=-0.068 Sum_probs=36.4
Q ss_pred HHHHHHHHhCCCeEEEEECC-CCHHHHHHHHHHh----CCCCCCCcEEEeCCEEEechhHHHHHH
Q 048504 149 YAVRMIFRGFRVWVDERDVS-MDSAYKKELQCVF----GGKNVTLPQVFIRGKHVGNADVLKSMY 208 (277)
Q Consensus 149 ~~Vk~iL~~~gV~y~ErDVs-~d~~~reELke~l----G~~~~tvPqVFI~G~~IGG~del~~L~ 208 (277)
..+..++...|++.++++-. .+..+.+.+++-. ..+...+|.++|+|+.+-|+.+...|.
T Consensus 86 ~~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~gtPt~~v~g~~~~G~~~~~~l~ 150 (154)
T cd03023 86 ESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARALGITGTPAFIIGDTVIPGAVPADTLK 150 (154)
T ss_pred HHHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHcCCCcCCeEEECCEEecCCCCHHHHH
Confidence 45677888888875433221 1233333332221 112378999999999999988766543
No 262
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=68.75 E-value=9.4 Score=31.05 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=17.2
Q ss_pred CCCcEEEeCCEEEechhHHHH
Q 048504 186 VTLPQVFIRGKHVGNADVLKS 206 (277)
Q Consensus 186 ~tvPqVFI~G~~IGG~del~~ 206 (277)
..+|.+||||+++.|.-++.+
T Consensus 135 ~~tPt~~inG~~~~~~~~~~~ 155 (162)
T PF13462_consen 135 TGTPTFFINGKYVVGPYTIEE 155 (162)
T ss_dssp SSSSEEEETTCEEETTTSHHH
T ss_pred ccccEEEECCEEeCCCCCHHH
Confidence 789999999999987655544
No 263
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=67.90 E-value=8.8 Score=35.85 Aligned_cols=57 Identities=19% Similarity=0.346 Sum_probs=40.0
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhCCCe--EEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEE
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVW--VDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHV 198 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~--y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~I 198 (277)
.|.||+- +||..|...-..|+++|+- +..+|-..-+. ..++. + ..++|-||+||+.+
T Consensus 12 ~VkI~~H------ktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f--~~~~~--~--V~SvP~Vf~DGel~ 70 (265)
T COG5494 12 EVKIFTH------KTCVSSYMLFEYLENKGLLGKVKIIDAELPPF--LAFEK--G--VISVPSVFIDGELV 70 (265)
T ss_pred EEEEEEe------cchHHHHHHHHHHHhcCCCCCceEEEcCCChH--HHhhc--c--eeecceEEEcCeEE
Confidence 5788886 4678999999999998754 55556554332 22222 2 37899999999976
No 264
>PRK14293 chaperone protein DnaJ; Provisional
Probab=67.78 E-value=5.3 Score=38.91 Aligned_cols=37 Identities=30% Similarity=0.833 Sum_probs=26.7
Q ss_pred CCCCCCCccceE---------------eCCCCCCcceeeeCCCCcceeCCCCCcCcee
Q 048504 227 FVCGSCGDVRFV---------------PCGNCSGSRKVFDEADGVPKRCLECNENGLI 269 (277)
Q Consensus 227 ~~C~~CGg~rfV---------------pC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLv 269 (277)
..|..|.|.+.+ +|+.|+|.-++.. ..|..|+-.|.+
T Consensus 161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v 212 (374)
T PRK14293 161 TTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIE------DPCDACGGQGVK 212 (374)
T ss_pred eeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEec------cCCCCCCCCccc
Confidence 468888887653 5888888877642 358888877764
No 265
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=67.57 E-value=16 Score=27.29 Aligned_cols=51 Identities=16% Similarity=0.343 Sum_probs=32.1
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhC--------CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEe
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGF--------RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFI 193 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~--------gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI 193 (277)
-+|.|.++|| +.|+.....|+.. .+.+..+|.+.+ ++....+. ..+|.+++
T Consensus 21 ~~v~f~~~~C------~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~~~~~~--~~~Pt~~~ 79 (104)
T cd02995 21 VLVEFYAPWC------GHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-----DVPSEFVV--DGFPTILF 79 (104)
T ss_pred EEEEEECCCC------HHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-----hhhhhccC--CCCCEEEE
Confidence 4666777775 6999877666542 356677787654 23333443 68898753
No 266
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=67.09 E-value=23 Score=31.64 Aligned_cols=67 Identities=15% Similarity=0.253 Sum_probs=42.6
Q ss_pred cEEEEEecCCCCCCCChhHHHH----HHHHHhCCCeEEEEECCCCH-----HH----HHHHHHHhCCCCCCCcEEEe---
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAV----RMIFRGFRVWVDERDVSMDS-----AY----KKELQCVFGGKNVTLPQVFI--- 193 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~V----k~iL~~~gV~y~ErDVs~d~-----~~----reELke~lG~~~~tvPqVFI--- 193 (277)
+||+|..+|| ++|++. +++-+.+++.+.-+.++.+. .+ ...+.+.+|.....+|..|+
T Consensus 72 ~lV~FwaswC------p~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~ 145 (181)
T PRK13728 72 KVVLFMQGHC------PYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNV 145 (181)
T ss_pred eEEEEECCCC------HhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeC
Confidence 3999999985 799976 66667789888776665331 11 13345555531258999875
Q ss_pred CCE-----EEechh
Q 048504 194 RGK-----HVGNAD 202 (277)
Q Consensus 194 ~G~-----~IGG~d 202 (277)
+|+ ++|..+
T Consensus 146 ~G~i~~~~~~G~~~ 159 (181)
T PRK13728 146 NTLEALPLLQGATD 159 (181)
T ss_pred CCcEEEEEEECCCC
Confidence 553 456554
No 267
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=66.19 E-value=8.7 Score=38.09 Aligned_cols=38 Identities=24% Similarity=0.712 Sum_probs=27.7
Q ss_pred CCCCCCCccce-------------EeCCCCCCcceeeeCCCCcceeCCCCCcCceee
Q 048504 227 FVCGSCGDVRF-------------VPCGNCSGSRKVFDEADGVPKRCLECNENGLIR 270 (277)
Q Consensus 227 ~~C~~CGg~rf-------------VpC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLvr 270 (277)
..|..|+|.+. ++|+.|+|+-+++ .-.|+.|+-.|.++
T Consensus 160 ~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i------~~pC~~C~G~G~v~ 210 (371)
T COG0484 160 KTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII------KDPCGKCKGKGRVK 210 (371)
T ss_pred CcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC------CCCCCCCCCCCeEe
Confidence 58888887753 3499999986665 34788888777653
No 268
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=66.03 E-value=9.1 Score=32.22 Aligned_cols=60 Identities=17% Similarity=0.113 Sum_probs=39.2
Q ss_pred HHHHHHHHhCCCeEEEEE-CCCCHHHHHHHHHHh----CCCCCCCcEEEeCCEEEechhHHHHHH
Q 048504 149 YAVRMIFRGFRVWVDERD-VSMDSAYKKELQCVF----GGKNVTLPQVFIRGKHVGNADVLKSMY 208 (277)
Q Consensus 149 ~~Vk~iL~~~gV~y~ErD-Vs~d~~~reELke~l----G~~~~tvPqVFI~G~~IGG~del~~L~ 208 (277)
..+..++...|+..++.+ ...+.++++++++-. ..+...+|.++|||+++=|.+.+..+.
T Consensus 124 ~~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~gi~gvPtfvv~g~~~~G~~~l~~~~ 188 (192)
T cd03022 124 AVLAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIARGVFGVPTFVVDGEMFWGQDRLDMLE 188 (192)
T ss_pred HHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHcCCCcCCeEEECCeeecccccHHHHH
Confidence 456778888888654322 123445555554432 112478999999999999998887653
No 269
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=64.83 E-value=18 Score=27.26 Aligned_cols=53 Identities=21% Similarity=0.240 Sum_probs=34.3
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHh----C--CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEe
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRG----F--RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFI 193 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~----~--gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI 193 (277)
|++|...+ |+.|..++..|+. + .|.|..+|++..+ .+.+.+|-....+|.|.+
T Consensus 16 ~~~f~~~~------~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~----~~~~~~~i~~~~~P~~~~ 74 (103)
T cd02982 16 LVLFYNKD------DSESEELRERFKEVAKKFKGKLLFVVVDADDFG----RHLEYFGLKEEDLPVIAI 74 (103)
T ss_pred EEEEEcCC------hhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhH----HHHHHcCCChhhCCEEEE
Confidence 45555554 5699999888875 2 3677788877643 345556642238999854
No 270
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=64.61 E-value=16 Score=29.17 Aligned_cols=53 Identities=21% Similarity=0.263 Sum_probs=32.2
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhC---------CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEe
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGF---------RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFI 193 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~---------gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI 193 (277)
||.|.++|| +.|+.....|+.. .|.+..+|.+.+. ..++.+..+- ..+|++++
T Consensus 23 vV~f~a~wC------~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~i--~~~Pt~~l 84 (114)
T cd02992 23 LVEFYASWC------GHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE--NVALCRDFGV--TGYPTLRY 84 (114)
T ss_pred EEEEECCCC------HHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh--hHHHHHhCCC--CCCCEEEE
Confidence 555667765 7999777766542 2555566655432 2345555554 67898854
No 271
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=63.98 E-value=15 Score=34.24 Aligned_cols=65 Identities=14% Similarity=0.120 Sum_probs=41.5
Q ss_pred cccCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHH----hCCCeEEEEECCCCHH-------HHHHHHHHhCCCCCCCc
Q 048504 121 SIRLPGTEDRIVVYLTSLRGIRRTFEDCYAVRMIFR----GFRVWVDERDVSMDSA-------YKKELQCVFGGKNVTLP 189 (277)
Q Consensus 121 ~i~~~~~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~----~~gV~y~ErDVs~d~~-------~reELke~lG~~~~tvP 189 (277)
.+....+..-||.|..++| +.|+...-+|+ .+++.+..++++.+.. .-..+.+.+|- ..+|
T Consensus 160 ~l~~l~~k~~Lv~F~AswC------p~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV--~~vP 231 (271)
T TIGR02740 160 VMKDLAKKSGLFFFFKSDC------PYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKI--RTVP 231 (271)
T ss_pred HHHHhcCCeEEEEEECCCC------ccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCC--CcCC
Confidence 3444455556777777775 79997776665 4678887777765321 01234556664 7899
Q ss_pred EEEe
Q 048504 190 QVFI 193 (277)
Q Consensus 190 qVFI 193 (277)
.+|+
T Consensus 232 tl~L 235 (271)
T TIGR02740 232 AVFL 235 (271)
T ss_pred eEEE
Confidence 9964
No 272
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=63.56 E-value=27 Score=30.38 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=28.3
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCH
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDS 171 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~ 171 (277)
+|.|...|.. .-+.+++++.+|+.+||+|+.+-++.|.
T Consensus 2 ~V~Ii~gs~S----D~~~~~~a~~~L~~~gi~~~~~V~saHR 39 (150)
T PF00731_consen 2 KVAIIMGSTS----DLPIAEEAAKTLEEFGIPYEVRVASAHR 39 (150)
T ss_dssp EEEEEESSGG----GHHHHHHHHHHHHHTT-EEEEEE--TTT
T ss_pred eEEEEeCCHH----HHHHHHHHHHHHHHcCCCEEEEEEeccC
Confidence 4666666654 3578999999999999999999888875
No 273
>PRK04023 DNA polymerase II large subunit; Validated
Probab=63.55 E-value=6.1 Score=43.80 Aligned_cols=45 Identities=24% Similarity=0.496 Sum_probs=32.3
Q ss_pred CCCCCCCCCcc-ceEeCCCCCCcceeeeCCCCcceeCCCCCcCce-eeCCCCCC
Q 048504 225 PGFVCGSCGDV-RFVPCGNCSGSRKVFDEADGVPKRCLECNENGL-IRCPDCCS 276 (277)
Q Consensus 225 ~~~~C~~CGg~-rfVpC~~C~GS~Kv~~~~~~~~~rC~~CNEnGL-vrCp~C~~ 276 (277)
+...|..||-. -...|++|+.- .....+|+.|-..+- -.||.|-.
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~-------Te~i~fCP~CG~~~~~y~CPKCG~ 671 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTH-------TEPVYRCPRCGIEVEEDECEKCGR 671 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCC-------CCcceeCccccCcCCCCcCCCCCC
Confidence 34789999966 33469999887 234679999976553 56999953
No 274
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=63.11 E-value=25 Score=35.56 Aligned_cols=72 Identities=14% Similarity=0.242 Sum_probs=47.8
Q ss_pred ccccCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHHhCC--CeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEE
Q 048504 120 SSIRLPGTEDRIVVYLTSLRGIRRTFEDCYAVRMIFRGFR--VWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKH 197 (277)
Q Consensus 120 ~~i~~~~~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~g--V~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~ 197 (277)
+.|+...+.-..--|.+-.| ..||+-..+..++.-++ |.-.-+|= .-+++|...+- ...+|.||+||+.
T Consensus 109 eqik~i~g~~~FETy~SltC---~nCPDVVQALN~msvlNp~I~H~~IdG---a~Fq~Evear~---IMaVPtvflnGe~ 179 (520)
T COG3634 109 EQIKAIDGDFHFETYFSLTC---HNCPDVVQALNLMSVLNPRIKHTAIDG---ALFQDEVEARN---IMAVPTVFLNGEE 179 (520)
T ss_pred HHHHhcCCceeEEEEEEeec---cCChHHHHHHHHHHhcCCCceeEEecc---hhhHhHHHhcc---ceecceEEEcchh
Confidence 56677777788888998766 34555555555555444 33444443 34777776652 4789999999998
Q ss_pred Eec
Q 048504 198 VGN 200 (277)
Q Consensus 198 IGG 200 (277)
.|.
T Consensus 180 fg~ 182 (520)
T COG3634 180 FGQ 182 (520)
T ss_pred hcc
Confidence 874
No 275
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=62.60 E-value=5.9 Score=44.77 Aligned_cols=44 Identities=27% Similarity=0.747 Sum_probs=29.8
Q ss_pred CCCCCCCCccce-EeCCCCCCcceeeeCCCCcceeCCCCCc------CceeeCCCCCC
Q 048504 226 GFVCGSCGDVRF-VPCGNCSGSRKVFDEADGVPKRCLECNE------NGLIRCPDCCS 276 (277)
Q Consensus 226 ~~~C~~CGg~rf-VpC~~C~GS~Kv~~~~~~~~~rC~~CNE------nGLvrCp~C~~ 276 (277)
...|..||..-+ .-|+.|+..... ...|+.|+- +|-.+||.|-.
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~-------vy~CPsCGaev~~des~a~~CP~CGt 717 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEP-------VYVCPDCGAEVPPDESGRVECPRCDV 717 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCC-------ceeCccCCCccCCCccccccCCCCCC
Confidence 368999997533 369999888522 237888865 33457888854
No 276
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=61.21 E-value=45 Score=26.45 Aligned_cols=35 Identities=14% Similarity=0.065 Sum_probs=20.4
Q ss_pred cEEEEE-ecCCCCCCCChhHHHHHHHHHh-------C--CCeEEEEECCCC
Q 048504 130 RIVVYL-TSLRGIRRTFEDCYAVRMIFRG-------F--RVWVDERDVSMD 170 (277)
Q Consensus 130 kVVLYt-tSlcgiR~Tc~~C~~Vk~iL~~-------~--gV~y~ErDVs~d 170 (277)
.|+||. .++ |+.|++....|.. . ++.+.-++++.+
T Consensus 20 ~vll~Fwa~w------C~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~ 64 (131)
T cd03009 20 TVGLYFSASW------CPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRD 64 (131)
T ss_pred EEEEEEECCC------ChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCC
Confidence 355555 555 5799866555532 2 566666666554
No 277
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=61.12 E-value=6.5 Score=32.68 Aligned_cols=19 Identities=32% Similarity=0.833 Sum_probs=8.5
Q ss_pred CCCCCCccceEeCCCCCCc
Q 048504 228 VCGSCGDVRFVPCGNCSGS 246 (277)
Q Consensus 228 ~C~~CGg~rfVpC~~C~GS 246 (277)
.|..|.|.+.++|..|+|+
T Consensus 77 ~C~~C~G~Gk~~C~~C~G~ 95 (111)
T PLN03165 77 KCINCDGAGSLTCTTCQGS 95 (111)
T ss_pred ECCCCCCcceeeCCCCCCC
Confidence 3444444444444444444
No 278
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=61.00 E-value=6.9 Score=42.89 Aligned_cols=23 Identities=35% Similarity=0.842 Sum_probs=18.3
Q ss_pred CCCCCCCCccceE------------eCCCCCCcce
Q 048504 226 GFVCGSCGDVRFV------------PCGNCSGSRK 248 (277)
Q Consensus 226 ~~~C~~CGg~rfV------------pC~~C~GS~K 248 (277)
.+.|+.|.|.+++ +|+.|+|.+-
T Consensus 736 ~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~ 770 (924)
T TIGR00630 736 GGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRY 770 (924)
T ss_pred CCCCCCCccceEEEEEccCCCCcccCCCCcCCcee
Confidence 5789999998755 5888888754
No 279
>KOG2767 consensus Translation initiation factor 5 (eIF-5) [Translation, ribosomal structure and biogenesis]
Probab=60.44 E-value=6.6 Score=38.89 Aligned_cols=76 Identities=22% Similarity=0.506 Sum_probs=50.7
Q ss_pred HHHHHhCCCCCCCcEEEe-------------CCEEEechhHHHHHHhhccHHHHhcCCCCCCCCCCCCCCCccceEeCCC
Q 048504 176 ELQCVFGGKNVTLPQVFI-------------RGKHVGNADVLKSMYETGELARVLDGFPRRQPGFVCGSCGDVRFVPCGN 242 (277)
Q Consensus 176 ELke~lG~~~~tvPqVFI-------------~G~~IGG~del~~L~EsGeL~klL~~~~~~~~~~~C~~CGg~rfVpC~~ 242 (277)
++...+|. .++.|.=|. +|+||-. -.|+.++|+.+|+++= -.||.|+.
T Consensus 41 eIakAL~R-Pp~Y~tKyFGcELGAQT~fd~kn~ryiVN-----G~Hd~~KLqdlLdgFI-------------kKFVlC~~ 101 (400)
T KOG2767|consen 41 EIAKALGR-PPLYPTKYFGCELGAQTKFDVKNGRYIVN-----GAHEASKLQDLLDGFI-------------KKFVLCPS 101 (400)
T ss_pred HHHHHhCC-CCCcccccceeeccccccccccCCeeeec-----ccccHHHHHHHHHHHH-------------HHheeCcC
Confidence 45555664 355555444 5566522 2478889999998753 37999999
Q ss_pred CCCcce-ee-eCCCCcceeCCCCCcCceee
Q 048504 243 CSGSRK-VF-DEADGVPKRCLECNENGLIR 270 (277)
Q Consensus 243 C~GS~K-v~-~~~~~~~~rC~~CNEnGLvr 270 (277)
|.-.-- ++ ..+....+.|-+|.--|.+.
T Consensus 102 C~NPETel~itk~q~i~~~CkACG~r~~~d 131 (400)
T KOG2767|consen 102 CENPETELIITKKQTISLKCKACGFRSDMD 131 (400)
T ss_pred CCCCceeEEecccchhhhHHHHcCCccccc
Confidence 988733 33 33456789999998777664
No 280
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=60.19 E-value=47 Score=30.13 Aligned_cols=66 Identities=18% Similarity=0.339 Sum_probs=32.9
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhC----CCeEEE-----------EECCCCHHH---HHHHHHHhCCCCCCCcEEE
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGF----RVWVDE-----------RDVSMDSAY---KKELQCVFGGKNVTLPQVF 192 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~----gV~y~E-----------rDVs~d~~~---reELke~lG~~~~tvPqVF 192 (277)
|-|||+-.| .-|--|-.+|..+ +|-..- .|-...+++ +....+..|....-.||++
T Consensus 2 VELFTSQGC------sSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~v 75 (202)
T PF06764_consen 2 VELFTSQGC------SSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVV 75 (202)
T ss_dssp EEEEE-TT-------TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEE
T ss_pred eeEecCCCC------CCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEE
Confidence 568998765 5676666666553 222111 444444443 3344455565457789999
Q ss_pred eCCE-EEechh
Q 048504 193 IRGK-HVGNAD 202 (277)
Q Consensus 193 I~G~-~IGG~d 202 (277)
|||+ +++|.+
T Consensus 76 VnG~~~~~g~~ 86 (202)
T PF06764_consen 76 VNGREHRVGSD 86 (202)
T ss_dssp ETTTEEEETT-
T ss_pred ECCeeeeeccC
Confidence 9996 667765
No 281
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=59.88 E-value=8.9 Score=41.08 Aligned_cols=47 Identities=30% Similarity=0.713 Sum_probs=35.4
Q ss_pred CCCCCCCCccceEeCCCCCCcceeeeCCCCcceeCCCCCcCce--eeCCCCCC
Q 048504 226 GFVCGSCGDVRFVPCGNCSGSRKVFDEADGVPKRCLECNENGL--IRCPDCCS 276 (277)
Q Consensus 226 ~~~C~~CGg~rfVpC~~C~GS~Kv~~~~~~~~~rC~~CNEnGL--vrCp~C~~ 276 (277)
.-.|..||=. .-|++|..+.-.+. . ...++|..|+-..- ..||.|-+
T Consensus 435 ~l~C~~Cg~v--~~Cp~Cd~~lt~H~-~-~~~L~CH~Cg~~~~~p~~Cp~Cgs 483 (730)
T COG1198 435 LLLCRDCGYI--AECPNCDSPLTLHK-A-TGQLRCHYCGYQEPIPQSCPECGS 483 (730)
T ss_pred eeecccCCCc--ccCCCCCcceEEec-C-CCeeEeCCCCCCCCCCCCCCCCCC
Confidence 4589999742 45999999955544 3 35899999998844 57999976
No 282
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=58.77 E-value=55 Score=24.70 Aligned_cols=54 Identities=13% Similarity=0.019 Sum_probs=41.4
Q ss_pred CChhHHHHHHHHHhCCCe---EEEEECCCCHHHHHHHHHHhCCCCCCCcEEEe-CCEEEechhHHHHH
Q 048504 144 TFEDCYAVRMIFRGFRVW---VDERDVSMDSAYKKELQCVFGGKNVTLPQVFI-RGKHVGNADVLKSM 207 (277)
Q Consensus 144 Tc~~C~~Vk~iL~~~gV~---y~ErDVs~d~~~reELke~lG~~~~tvPqVFI-~G~~IGG~del~~L 207 (277)
.-++|-++..+|+-.+.+ |+.+-.+. +. +.. ...+|.+.. +|+.|.|+.++.+.
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n-~~-------~Sp--tg~LP~L~~~~~~~vsg~~~Iv~y 70 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNN-PW-------LSP--TGELPALIDSGGTWVSGFRNIVEY 70 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCC-CC-------cCC--CCCCCEEEECCCcEEECHHHHHHh
Confidence 347999999999999999 66655543 21 111 257999999 99999999998864
No 283
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=58.68 E-value=6.1 Score=25.81 Aligned_cols=27 Identities=26% Similarity=0.674 Sum_probs=15.6
Q ss_pred eCCCCCCcceeeeC-CCCcceeCCCCCc
Q 048504 239 PCGNCSGSRKVFDE-ADGVPKRCLECNE 265 (277)
Q Consensus 239 pC~~C~GS~Kv~~~-~~~~~~rC~~CNE 265 (277)
.|++|+-..-++.. ..+....||.|..
T Consensus 7 ~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (41)
T smart00834 7 RCEDCGHTFEVLQKISDDPLATCPECGG 34 (41)
T ss_pred EcCCCCCEEEEEEecCCCCCCCCCCCCC
Confidence 46777665444332 1144677888876
No 284
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=58.20 E-value=34 Score=30.76 Aligned_cols=69 Identities=12% Similarity=0.038 Sum_probs=52.1
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCC--HHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHH
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMD--SAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKS 206 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d--~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~ 206 (277)
+.++|+.... +.|++|...+..+|+.|+.+.|+.. .....|+..+... .++|.+--+|-.+=....+..
T Consensus 2 ~~~ly~~~~s------~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~--~kVP~l~d~~~~l~eS~AI~~ 72 (226)
T KOG0867|consen 2 KLKLYGHLGS------PPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPL--GKVPALEDGGLTLWESHAILR 72 (226)
T ss_pred CceEeecCCC------cchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcC--CCCCeEecCCeEEeeHHHHHH
Confidence 4678888754 6899999999999999998855542 3344566666654 689999888888877766655
No 285
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=58.06 E-value=7.6 Score=24.81 Aligned_cols=24 Identities=33% Similarity=0.861 Sum_probs=13.3
Q ss_pred CCCCCCcceeeeCCCCcceeCCCCCc
Q 048504 240 CGNCSGSRKVFDEADGVPKRCLECNE 265 (277)
Q Consensus 240 C~~C~GS~Kv~~~~~~~~~rC~~CNE 265 (277)
|+.|++..+.... +-.++|+.|+.
T Consensus 6 C~~CG~~t~~~~~--g~~r~C~~Cg~ 29 (32)
T PF09297_consen 6 CGRCGAPTKPAPG--GWARRCPSCGH 29 (32)
T ss_dssp -TTT--BEEE-SS--SS-EEESSSS-
T ss_pred cCcCCccccCCCC--cCEeECCCCcC
Confidence 7777777666653 45899999863
No 286
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=56.96 E-value=66 Score=23.78 Aligned_cols=54 Identities=11% Similarity=0.129 Sum_probs=30.0
Q ss_pred CCcEEEEEecCCCCCCCChhHHHHHHHHHh---------CCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEe
Q 048504 128 EDRIVVYLTSLRGIRRTFEDCYAVRMIFRG---------FRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFI 193 (277)
Q Consensus 128 ~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~---------~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI 193 (277)
..+|+||.++ ..|++|+....-+-. .++-+..+|++...... .+.. . -+|.++|
T Consensus 17 ~kpvlv~f~a-----~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~-~~~~---~---~~P~~~~ 79 (82)
T PF13899_consen 17 GKPVLVDFGA-----DWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA-QFDR---Q---GYPTFFF 79 (82)
T ss_dssp TSEEEEEEET-----TTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH-HHHH---C---SSSEEEE
T ss_pred CCCEEEEEEC-----CCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH-HhCC---c---cCCEEEE
Confidence 3456666654 357899977665522 34556777875433211 1111 2 3888865
No 287
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=56.22 E-value=9.9 Score=32.72 Aligned_cols=7 Identities=57% Similarity=2.033 Sum_probs=3.4
Q ss_pred eeeCCCC
Q 048504 268 LIRCPDC 274 (277)
Q Consensus 268 LvrCp~C 274 (277)
..|||.|
T Consensus 133 ~~rC~~C 139 (147)
T cd03031 133 FLRCPEC 139 (147)
T ss_pred EEECCCC
Confidence 4445444
No 288
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=55.80 E-value=64 Score=25.89 Aligned_cols=36 Identities=11% Similarity=0.026 Sum_probs=20.2
Q ss_pred cEEEEE-ecCCCCCCCChhHHHHHHHHHh-------C--CCeEEEEECCCCH
Q 048504 130 RIVVYL-TSLRGIRRTFEDCYAVRMIFRG-------F--RVWVDERDVSMDS 171 (277)
Q Consensus 130 kVVLYt-tSlcgiR~Tc~~C~~Vk~iL~~-------~--gV~y~ErDVs~d~ 171 (277)
.|+||+ .+| |+.|......|+. . ++.+..++++.+.
T Consensus 19 ~vll~F~atw------C~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~ 64 (132)
T cd02964 19 TVGLYFSASW------CPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSE 64 (132)
T ss_pred EEEEEEECCC------CchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCH
Confidence 344444 555 5789876555432 2 4666666666543
No 289
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=54.84 E-value=30 Score=31.67 Aligned_cols=72 Identities=14% Similarity=0.198 Sum_probs=46.9
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECC--CC-HHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHHH
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVS--MD-SAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKS 206 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs--~d-~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~~ 206 (277)
+-+||+- |+ -.|. .+||-.|.=++|+|+.+-|+ .+ ..+-.++++.... .+||.+.|||..|-..-.+.+
T Consensus 5 KpiLYSY-Wr---SSCs--wRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm--~kVP~L~i~g~tl~eS~AII~ 76 (217)
T KOG0868|consen 5 KPILYSY-WR---SSCS--WRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPM--EKVPTLVIDGLTLTESLAIIE 76 (217)
T ss_pred cchhhhh-hc---ccch--HHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCch--hhCCeEEECCEEeehHHHHHH
Confidence 5566653 32 2333 57777777788887766554 33 3344577777644 789999999999877666655
Q ss_pred HHh
Q 048504 207 MYE 209 (277)
Q Consensus 207 L~E 209 (277)
..|
T Consensus 77 YLe 79 (217)
T KOG0868|consen 77 YLE 79 (217)
T ss_pred HHH
Confidence 433
No 290
>PHA00626 hypothetical protein
Probab=54.52 E-value=10 Score=28.36 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=7.7
Q ss_pred eCCCCCc-CceeeCCCC
Q 048504 259 RCLECNE-NGLIRCPDC 274 (277)
Q Consensus 259 rC~~CNE-nGLvrCp~C 274 (277)
||..|+. ..+-.||+|
T Consensus 13 rcg~cr~~snrYkCkdC 29 (59)
T PHA00626 13 KEKTMRGWSDDYVCCDC 29 (59)
T ss_pred eeceecccCcceEcCCC
Confidence 4444444 444455554
No 291
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=54.45 E-value=9 Score=25.21 Aligned_cols=24 Identities=29% Similarity=0.667 Sum_probs=10.5
Q ss_pred eCCCCCCcceeeeCCCCcceeCCCCC
Q 048504 239 PCGNCSGSRKVFDEADGVPKRCLECN 264 (277)
Q Consensus 239 pC~~C~GS~Kv~~~~~~~~~rC~~CN 264 (277)
.|..|++-.=+..++ ..+.|+.|.
T Consensus 5 ~C~~C~~~~i~~~~~--~~~~C~~Cg 28 (33)
T PF08792_consen 5 KCSKCGGNGIVNKED--DYEVCIFCG 28 (33)
T ss_pred EcCCCCCCeEEEecC--CeEEcccCC
Confidence 455555543222332 235555554
No 292
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=53.43 E-value=15 Score=27.10 Aligned_cols=35 Identities=23% Similarity=0.577 Sum_probs=24.5
Q ss_pred cceEeCCCCCCcceeeeCCCC----cceeCCCCCcCcee
Q 048504 235 VRFVPCGNCSGSRKVFDEADG----VPKRCLECNENGLI 269 (277)
Q Consensus 235 ~rfVpC~~C~GS~Kv~~~~~~----~~~rC~~CNEnGLv 269 (277)
..++.||.|++..++-.+++. --+-||.|-.--||
T Consensus 2 ~~Wi~CP~CgnKTR~kir~DT~LkNfPlyCpKCK~EtlI 40 (55)
T PF14205_consen 2 SEWILCPICGNKTRLKIREDTVLKNFPLYCPKCKQETLI 40 (55)
T ss_pred CeEEECCCCCCccceeeecCceeccccccCCCCCceEEE
Confidence 368999999999887544322 25778888765554
No 293
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.
Probab=53.34 E-value=5.9 Score=39.32 Aligned_cols=56 Identities=20% Similarity=0.504 Sum_probs=42.3
Q ss_pred CCEEEechhHHHHHHhhccHHHHh--cCCCCCCCCCCCCCCCcc-----------ceEeCCCCCCccee
Q 048504 194 RGKHVGNADVLKSMYETGELARVL--DGFPRRQPGFVCGSCGDV-----------RFVPCGNCSGSRKV 249 (277)
Q Consensus 194 ~G~~IGG~del~~L~EsGeL~klL--~~~~~~~~~~~C~~CGg~-----------rfVpC~~C~GS~Kv 249 (277)
+|..+-|.+++.+..+.|-++.|| +.+........|..||.. .+..|+.|++...+
T Consensus 290 ~G~avyG~~eV~~ALe~GAVetLLV~d~l~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 358 (409)
T TIGR00108 290 DGLACYGEDEVLKALDLGAVETLIVSEDLEYIRVTYKCAECGEVIEKTVRELKDKKFAICPACGQEMDV 358 (409)
T ss_pred CCcEEeCHHHHHHHHHhCCCcEEEEeccccceeEEEEcCCCCceeecccccccccccccCcccCccccc
Confidence 478899999999999999999986 555554556788888842 23468888877543
No 294
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=52.88 E-value=13 Score=35.84 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=52.0
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCC-HHHHH-HHHHHhCCCCCCCcEEEeCCEEEechhHHHHHH
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMD-SAYKK-ELQCVFGGKNVTLPQVFIRGKHVGNADVLKSMY 208 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d-~~~re-ELke~lG~~~~tvPqVFI~G~~IGG~del~~L~ 208 (277)
.|+|.=++. -..++|+..+..+||.|++.||+-- .++.+ .+..+.. ...||++.-+...|-.++.+.+..
T Consensus 27 ~vLyhhpys------f~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp--~gevPVl~~g~~II~d~tqIIdYv 98 (325)
T KOG4420|consen 27 LVLYHHPYS------FSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNP--GGEVPVLIHGDNIISDYTQIIDYV 98 (325)
T ss_pred ceeeecCcc------cccceeeeehhhcccccceeeccCccccccCchheecCC--CCCCceEecCCeecccHHHHHHHH
Confidence 889988765 4789999999999999999999742 12222 2223322 257897766666778999988877
Q ss_pred hh
Q 048504 209 ET 210 (277)
Q Consensus 209 Es 210 (277)
|.
T Consensus 99 Er 100 (325)
T KOG4420|consen 99 ER 100 (325)
T ss_pred HH
Confidence 76
No 295
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=52.81 E-value=91 Score=24.47 Aligned_cols=36 Identities=11% Similarity=0.066 Sum_probs=22.2
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHh----CCCeEEEEECCCCHH
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRG----FRVWVDERDVSMDSA 172 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~----~gV~y~ErDVs~d~~ 172 (277)
||.|..++ |+.|.+....|+. +++.+..+++..+.+
T Consensus 29 vv~F~a~~------C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~~ 68 (127)
T cd03010 29 LLNVWASW------CAPCREEHPVLMALARQGRVPIYGINYKDNPE 68 (127)
T ss_pred EEEEEcCc------CHHHHHHHHHHHHHHHhcCcEEEEEECCCCHH
Confidence 44455544 6899976666654 357777777655443
No 296
>PTZ00062 glutaredoxin; Provisional
Probab=52.14 E-value=48 Score=30.00 Aligned_cols=52 Identities=8% Similarity=0.134 Sum_probs=34.3
Q ss_pred CCcEEEEE-ecCCCCCCCChhHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE--EeCCEEEe
Q 048504 128 EDRIVVYL-TSLRGIRRTFEDCYAVRMIFRGF-----RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQV--FIRGKHVG 199 (277)
Q Consensus 128 ~~kVVLYt-tSlcgiR~Tc~~C~~Vk~iL~~~-----gV~y~ErDVs~d~~~reELke~lG~~~~tvPqV--FI~G~~IG 199 (277)
.+.+|+|+ .+|| ++|+.+..+|..+ .|.|..+|.+ .+ ...+|.+ |=+|+.|+
T Consensus 17 ~g~~vl~f~a~w~------~~C~~m~~vl~~l~~~~~~~~F~~V~~d------------~~--V~~vPtfv~~~~g~~i~ 76 (204)
T PTZ00062 17 TGKLVLYVKSSKE------PEYEQLMDVCNALVEDFPSLEFYVVNLA------------DA--NNEYGVFEFYQNSQLIN 76 (204)
T ss_pred CCcEEEEEeCCCC------cchHHHHHHHHHHHHHCCCcEEEEEccc------------cC--cccceEEEEEECCEEEe
Confidence 35666666 6664 7999998888775 3566666643 33 3678965 45776664
No 297
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=50.79 E-value=16 Score=34.37 Aligned_cols=66 Identities=8% Similarity=0.088 Sum_probs=45.9
Q ss_pred ccccCCCCCCcEEEEEecCCCCCCCChhHHHHHHHH----HhCCCeEEEEECCCC--HHHH-----HHHHHHhCCCCCCC
Q 048504 120 SSIRLPGTEDRIVVYLTSLRGIRRTFEDCYAVRMIF----RGFRVWVDERDVSMD--SAYK-----KELQCVFGGKNVTL 188 (277)
Q Consensus 120 ~~i~~~~~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL----~~~gV~y~ErDVs~d--~~~r-----eELke~lG~~~~tv 188 (277)
..|+.......+++|+.+. |++|++.--+| +.+|+.+..++++.. +++. ..+.+.+|. ..+
T Consensus 143 ~~i~~la~~~gL~fFy~~~------C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v--~~~ 214 (256)
T TIGR02739 143 KAIQQLSQSYGLFFFYRGK------SPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGV--KYF 214 (256)
T ss_pred HHHHHHHhceeEEEEECCC------CchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCC--ccC
Confidence 5677777788899999875 57999766666 567999888888743 2211 234455654 679
Q ss_pred cEEEe
Q 048504 189 PQVFI 193 (277)
Q Consensus 189 PqVFI 193 (277)
|.+|+
T Consensus 215 Pal~L 219 (256)
T TIGR02739 215 PALYL 219 (256)
T ss_pred ceEEE
Confidence 99975
No 298
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=50.78 E-value=14 Score=26.27 Aligned_cols=28 Identities=32% Similarity=0.777 Sum_probs=18.5
Q ss_pred eEeCCCCCCcceeeeCC-CC------cceeCCCCCc
Q 048504 237 FVPCGNCSGSRKVFDEA-DG------VPKRCLECNE 265 (277)
Q Consensus 237 fVpC~~C~GS~Kv~~~~-~~------~~~rC~~CNE 265 (277)
..|||-| |+..+.... .+ .++.|..|.-
T Consensus 3 LkPCPFC-G~~~~~~~~~~~~~~~~~~~V~C~~Cga 37 (61)
T PF14354_consen 3 LKPCPFC-GSADVLIRQDEGFDYGMYYYVECTDCGA 37 (61)
T ss_pred CcCCCCC-CCcceEeecccCCCCCCEEEEEcCCCCC
Confidence 4689999 776664332 11 4688888865
No 299
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=49.70 E-value=57 Score=28.71 Aligned_cols=65 Identities=22% Similarity=0.191 Sum_probs=42.8
Q ss_pred CChhHHHHHHHHHhCCCeEEEEECCCCHH--HHHHHHHH-h-----------CC---------CCCCCcEE--EeCCEEE
Q 048504 144 TFEDCYAVRMIFRGFRVWVDERDVSMDSA--YKKELQCV-F-----------GG---------KNVTLPQV--FIRGKHV 198 (277)
Q Consensus 144 Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~--~reELke~-l-----------G~---------~~~tvPqV--FI~G~~I 198 (277)
..+..+++..+|+.+||+|+.+=++.|+. ...++.+. - |. ...++|.| -+.....
T Consensus 10 D~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~PVIgvP~~~~~l 89 (156)
T TIGR01162 10 DLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPLPVIGVPVPSKAL 89 (156)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCCCEEEecCCccCC
Confidence 35789999999999999999988888742 22333221 0 10 02677887 3455567
Q ss_pred echhHHHHHH
Q 048504 199 GNADVLKSMY 208 (277)
Q Consensus 199 GG~del~~L~ 208 (277)
+|.|.|..+.
T Consensus 90 ~G~daLlS~v 99 (156)
T TIGR01162 90 SGLDSLLSIV 99 (156)
T ss_pred CCHHHHHHHh
Confidence 7877766544
No 300
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=49.40 E-value=16 Score=30.22 Aligned_cols=29 Identities=21% Similarity=0.525 Sum_probs=20.9
Q ss_pred ceEeCCCCCCccee-eeCCCCcceeCCCCC
Q 048504 236 RFVPCGNCSGSRKV-FDEADGVPKRCLECN 264 (277)
Q Consensus 236 rfVpC~~C~GS~Kv-~~~~~~~~~rC~~CN 264 (277)
.||.|+.|+-.--. ..++...+++|-+|.
T Consensus 79 ~yVlC~~C~spdT~l~k~~r~~~l~C~aCG 108 (110)
T smart00653 79 EYVLCPECGSPDTELIKENRLFFLKCEACG 108 (110)
T ss_pred hcEECCCCCCCCcEEEEeCCeEEEEccccC
Confidence 58999999988443 333344589999985
No 301
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=49.17 E-value=17 Score=34.04 Aligned_cols=66 Identities=8% Similarity=0.033 Sum_probs=44.3
Q ss_pred ccccCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHH----hCCCeEEEEECCC--CHHHH-----HHHHHHhCCCCCCC
Q 048504 120 SSIRLPGTEDRIVVYLTSLRGIRRTFEDCYAVRMIFR----GFRVWVDERDVSM--DSAYK-----KELQCVFGGKNVTL 188 (277)
Q Consensus 120 ~~i~~~~~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~----~~gV~y~ErDVs~--d~~~r-----eELke~lG~~~~tv 188 (277)
..|+.......+++|+.+. |++|+..--+|+ .+|+.+.-++++. .+++. ....+.+|- ..+
T Consensus 136 ~~i~~la~~~GL~fFy~s~------Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v--~~~ 207 (248)
T PRK13703 136 QAIAKLAEHYGLMFFYRGQ------DPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGV--KYF 207 (248)
T ss_pred HHHHHHHhcceEEEEECCC------CchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCC--ccc
Confidence 5577777788899999875 689997655554 5789888887764 22211 122345554 678
Q ss_pred cEEEe
Q 048504 189 PQVFI 193 (277)
Q Consensus 189 PqVFI 193 (277)
|.+|+
T Consensus 208 PAl~L 212 (248)
T PRK13703 208 PALML 212 (248)
T ss_pred ceEEE
Confidence 99986
No 302
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=48.75 E-value=12 Score=37.61 Aligned_cols=33 Identities=27% Similarity=0.500 Sum_probs=20.4
Q ss_pred EeCCCCCCcceeeeCCCCcceeCCCCCcCceee
Q 048504 238 VPCGNCSGSRKVFDEADGVPKRCLECNENGLIR 270 (277)
Q Consensus 238 VpC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLvr 270 (277)
..|+.|+-|+..-.-+.-..-.||.|||+-|..
T Consensus 228 ~~C~~C~~s~n~e~~~~sk~~~Cp~C~~~~L~~ 260 (457)
T KOG2324|consen 228 MSCPSCGYSKNSEDLDLSKIASCPKCNEGRLTK 260 (457)
T ss_pred eecCcCCccCchhhhcCCccccCCcccCCCccc
Confidence 348888866554221222247899999987653
No 303
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=48.60 E-value=19 Score=30.87 Aligned_cols=34 Identities=18% Similarity=0.463 Sum_probs=23.7
Q ss_pred ceEeCCCCCCcceee-eCCCCcceeCCCCCcCcee
Q 048504 236 RFVPCGNCSGSRKVF-DEADGVPKRCLECNENGLI 269 (277)
Q Consensus 236 rfVpC~~C~GS~Kv~-~~~~~~~~rC~~CNEnGLv 269 (277)
.||.|+.|+-.--.+ .++...+++|-+|....-|
T Consensus 101 ~yVlC~~C~spdT~l~k~~r~~~l~C~ACGa~~~V 135 (138)
T PRK03988 101 EYVICPECGSPDTKLIKEGRIWVLKCEACGAETPV 135 (138)
T ss_pred hcEECCCCCCCCcEEEEcCCeEEEEcccCCCCCcC
Confidence 489999998874433 3333358999999876543
No 304
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=48.31 E-value=20 Score=30.57 Aligned_cols=34 Identities=18% Similarity=0.504 Sum_probs=23.0
Q ss_pred ceEeCCCCCCcceee-eCCCCcceeCCCCCcCcee
Q 048504 236 RFVPCGNCSGSRKVF-DEADGVPKRCLECNENGLI 269 (277)
Q Consensus 236 rfVpC~~C~GS~Kv~-~~~~~~~~rC~~CNEnGLv 269 (277)
.||.|+.|+-.--.+ .++...+++|-+|..-.-|
T Consensus 96 ~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~~~v 130 (133)
T TIGR00311 96 KYVICRECNRPDTRIIKEGRVSLLKCEACGAKAPL 130 (133)
T ss_pred heEECCCCCCCCcEEEEeCCeEEEecccCCCCCcc
Confidence 599999999874433 3222336899999765543
No 305
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=48.04 E-value=9 Score=35.86 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=24.2
Q ss_pred CCCCCCCCccceEeCCCCCCcceeeeCC
Q 048504 226 GFVCGSCGDVRFVPCGNCSGSRKVFDEA 253 (277)
Q Consensus 226 ~~~C~~CGg~rfVpC~~C~GS~Kv~~~~ 253 (277)
...|..-.|.++|+||.|.|+-|+..+.
T Consensus 27 ~~py~e~~g~~~vtCPTCqGtGrIP~eq 54 (238)
T PF07092_consen 27 SFPYVEFTGRDSVTCPTCQGTGRIPREQ 54 (238)
T ss_pred cCccccccCCCCCcCCCCcCCccCCccc
Confidence 4678888899999999999999997654
No 306
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=46.63 E-value=8.1 Score=25.29 Aligned_cols=19 Identities=42% Similarity=1.144 Sum_probs=11.7
Q ss_pred CCCCCCCccceEe---CCCCCC
Q 048504 227 FVCGSCGDVRFVP---CGNCSG 245 (277)
Q Consensus 227 ~~C~~CGg~rfVp---C~~C~G 245 (277)
..|..||...|-| |+.|++
T Consensus 12 ~rC~~Cg~~~~pPr~~Cp~C~s 33 (37)
T PF12172_consen 12 QRCRDCGRVQFPPRPVCPHCGS 33 (37)
T ss_dssp EE-TTT--EEES--SEETTTT-
T ss_pred EEcCCCCCEecCCCcCCCCcCc
Confidence 5799999998877 888853
No 307
>PRK02935 hypothetical protein; Provisional
Probab=46.51 E-value=12 Score=31.08 Aligned_cols=26 Identities=27% Similarity=0.718 Sum_probs=20.5
Q ss_pred eEeCCCCCCcceeeeCCCCcceeCCCCCcC
Q 048504 237 FVPCGNCSGSRKVFDEADGVPKRCLECNEN 266 (277)
Q Consensus 237 fVpC~~C~GS~Kv~~~~~~~~~rC~~CNEn 266 (277)
-|.||+|+--.|...+ .-.|..|||.
T Consensus 70 qV~CP~C~K~TKmLGr----vD~CM~C~~P 95 (110)
T PRK02935 70 QVICPSCEKPTKMLGR----VDACMHCNQP 95 (110)
T ss_pred eeECCCCCchhhhccc----eeecCcCCCc
Confidence 4679999988887763 5689999984
No 308
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=46.37 E-value=57 Score=33.23 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=36.1
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhC-------CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE--EeCC
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGF-------RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQV--FIRG 195 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~-------gV~y~ErDVs~d~~~reELke~lG~~~~tvPqV--FI~G 195 (277)
||.|+.+|| +.|+.+..+|+.+ ++.+..+|++.+.. +.+.+.++- ..+|.| |-+|
T Consensus 375 LV~FyApWC------~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~~~~~~~~I--~~~PTii~Fk~g 438 (463)
T TIGR00424 375 LVVLYAPWC------PFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--EFAKQELQL--GSFPTILFFPKH 438 (463)
T ss_pred EEEEECCCC------hHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--HHHHHHcCC--CccceEEEEECC
Confidence 566778775 6999888777542 47788888887632 222334443 678987 4455
No 309
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=45.91 E-value=1.1e+02 Score=26.32 Aligned_cols=36 Identities=11% Similarity=0.104 Sum_probs=23.1
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHH---hCCCeEEEEECCCCHH
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFR---GFRVWVDERDVSMDSA 172 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~---~~gV~y~ErDVs~d~~ 172 (277)
|+.|..+| |+.|++..-.|. ..++.+.-++++.+.+
T Consensus 72 vv~Fwatw------C~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~ 110 (185)
T PRK15412 72 LLNVWATW------CPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQ 110 (185)
T ss_pred EEEEECCC------CHHHHHHHHHHHHHHHcCCEEEEEECCCCHH
Confidence 44455555 579986554443 4578888888766544
No 310
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=45.90 E-value=13 Score=31.37 Aligned_cols=68 Identities=19% Similarity=0.430 Sum_probs=40.8
Q ss_pred HHHHHHHHhCCCCCCC---cEEEeCCEEEechhHHHHHHhhccHHHHhcCCCCCCCCCCCCCCCccceEeCCCCCCccee
Q 048504 173 YKKELQCVFGGKNVTL---PQVFIRGKHVGNADVLKSMYETGELARVLDGFPRRQPGFVCGSCGDVRFVPCGNCSGSRKV 249 (277)
Q Consensus 173 ~reELke~lG~~~~tv---PqVFI~G~~IGG~del~~L~EsGeL~klL~~~~~~~~~~~C~~CGg~rfVpC~~C~GS~Kv 249 (277)
+.+.|..-+|.. .++ -++.|+|+| ....|+.+|+.+= ..||.|+.|+..--.
T Consensus 51 ~~ky~~~ELgt~-~~id~~~~lii~G~~-----------~~~~i~~~L~~fI-------------~~yVlC~~C~spdT~ 105 (125)
T PF01873_consen 51 VLKYFGKELGTQ-GSIDGKGRLIINGRF-----------SSKQIQDLLDKFI-------------KEYVLCPECGSPDTE 105 (125)
T ss_dssp HHHHHHHHSSSE-EEEETTTEEEEESSS-----------SCCHHHHHHHHHH-------------CHHSSCTSTSSSSEE
T ss_pred HHHHHHHHHCCc-eEECCCCEEEEEEec-----------CHHHHHHHHHHHH-------------HHEEEcCCCCCCccE
Confidence 345555556641 111 566666654 4455666665421 258999999987544
Q ss_pred e-eCCCCcceeCCCCCc
Q 048504 250 F-DEADGVPKRCLECNE 265 (277)
Q Consensus 250 ~-~~~~~~~~rC~~CNE 265 (277)
+ .++...+++|-+|..
T Consensus 106 l~k~~r~~~l~C~aCGa 122 (125)
T PF01873_consen 106 LIKEGRLIFLKCKACGA 122 (125)
T ss_dssp EEEETTCCEEEETTTSC
T ss_pred EEEcCCEEEEEecccCC
Confidence 3 334556899999975
No 311
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=45.89 E-value=13 Score=31.17 Aligned_cols=60 Identities=20% Similarity=0.093 Sum_probs=36.8
Q ss_pred HHHHHHHHhCCCeEEEEECC-CCHHHHHHHHHHh----CCCCCCCcEEEeCCE-EEechhHHHHHH
Q 048504 149 YAVRMIFRGFRVWVDERDVS-MDSAYKKELQCVF----GGKNVTLPQVFIRGK-HVGNADVLKSMY 208 (277)
Q Consensus 149 ~~Vk~iL~~~gV~y~ErDVs-~d~~~reELke~l----G~~~~tvPqVFI~G~-~IGG~del~~L~ 208 (277)
..+.+++...|++-++.+-. .++++++++++-. ..+...+|.++|||+ .+-|.+.+..|.
T Consensus 124 ~vl~~~~~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~GvP~~vv~g~~~~~G~~~~~~l~ 189 (193)
T PF01323_consen 124 DVLAEIAEEAGLDPDEFDAALDSPEVKAALEEDTAEARQLGVFGVPTFVVNGKYRFFGADRLDELE 189 (193)
T ss_dssp HHHHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTTCSSSSEEEETTTEEEESCSSHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHhcchHHHHHHHHHHHHHHHcCCcccCEEEECCEEEEECCCCHHHHH
Confidence 45677788888865443332 3445555554332 112378999999999 788888776543
No 312
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=45.75 E-value=13 Score=30.88 Aligned_cols=54 Identities=22% Similarity=0.123 Sum_probs=31.2
Q ss_pred HHHHHHHHhCCCeEEEEECC-CCHHHHHHHHHHh----CCCCCCCcEEEeCCEEEechh
Q 048504 149 YAVRMIFRGFRVWVDERDVS-MDSAYKKELQCVF----GGKNVTLPQVFIRGKHVGNAD 202 (277)
Q Consensus 149 ~~Vk~iL~~~gV~y~ErDVs-~d~~~reELke~l----G~~~~tvPqVFI~G~~IGG~d 202 (277)
..+..++...|+..++.+-. .+.++.+.+++-. ..+...+|.++|||+++-+..
T Consensus 100 ~~l~~~a~~~Gl~~~~~~~~~~s~~~~~~i~~~~~~~~~~gi~gTPt~iInG~~~~~~~ 158 (178)
T cd03019 100 DDIRKIFLSQGVDKKKFDAAYNSFSVKALVAKAEKLAKKYKITGVPAFVVNGKYVVNPS 158 (178)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcCCCCCCeEEECCEEEEChh
Confidence 56788888888865432221 2233333332221 112378999999999875544
No 313
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=45.33 E-value=25 Score=38.80 Aligned_cols=90 Identities=21% Similarity=0.361 Sum_probs=51.4
Q ss_pred CCCcEEEeCCEEEechhHHHHHHhhccHH-----HHhcCCCC-----CC----------C-------CCCCCCCCccceE
Q 048504 186 VTLPQVFIRGKHVGNADVLKSMYETGELA-----RVLDGFPR-----RQ----------P-------GFVCGSCGDVRFV 238 (277)
Q Consensus 186 ~tvPqVFI~G~~IGG~del~~L~EsGeL~-----klL~~~~~-----~~----------~-------~~~C~~CGg~rfV 238 (277)
.++|-||..|..++|...+.....+|... +.|..-.. .. | ...-.+--..+..
T Consensus 718 Ts~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1006)
T PRK12775 718 TNLPGVFAGGDIVTGGATVILAMGAGRRAARSIATYLRLGKKWPITAEEAAAFQPGKLLPAIELHTHAGAVAAGAETGVA 797 (1006)
T ss_pred CCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccccccccccchhHhhhcccchhcccccCCCc
Confidence 46899999999998888777777777543 33432100 00 0 0000000122334
Q ss_pred eCCCCCCcce-----eeeCCCCcceeCCCCCcCce------eeCCCCC
Q 048504 239 PCGNCSGSRK-----VFDEADGVPKRCLECNENGL------IRCPDCC 275 (277)
Q Consensus 239 pC~~C~GS~K-----v~~~~~~~~~rC~~CNEnGL------vrCp~C~ 275 (277)
.|++||..-- +-.......-||-.|.+.-+ -+||.|-
T Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (1006)
T PRK12775 798 TCPKCHRPLEGDEEYVCCATSELQWRCDDCGKVSEGFAFPYGMCPACG 845 (1006)
T ss_pred cCcccCCCCCCCceeEEecCcceeeehhhhccccccccCCcCcCcccc
Confidence 5888875422 11223456789999988754 5899883
No 314
>PTZ00102 disulphide isomerase; Provisional
Probab=44.95 E-value=64 Score=31.33 Aligned_cols=55 Identities=16% Similarity=0.275 Sum_probs=35.5
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHH-------hC--CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEE--eCCE
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFR-------GF--RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVF--IRGK 196 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~-------~~--gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVF--I~G~ 196 (277)
-+|.|+++|| +.|+++...+. .. .|.+-.+|...+. ++.+..+- ..+|.++ -+|.
T Consensus 52 ~lv~f~a~wC------~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~----~l~~~~~i--~~~Pt~~~~~~g~ 117 (477)
T PTZ00102 52 VLVKFYAPWC------GHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM----ELAQEFGV--RGYPTIKFFNKGN 117 (477)
T ss_pred EEEEEECCCC------HHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH----HHHHhcCC--CcccEEEEEECCc
Confidence 4677777776 69987654433 22 4778888888765 34555554 6789873 3554
No 315
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=44.82 E-value=1.2e+02 Score=25.72 Aligned_cols=27 Identities=11% Similarity=-0.071 Sum_probs=18.3
Q ss_pred CChhHHHHHHHHHh---CCCeEEEEECCCC
Q 048504 144 TFEDCYAVRMIFRG---FRVWVDERDVSMD 170 (277)
Q Consensus 144 Tc~~C~~Vk~iL~~---~gV~y~ErDVs~d 170 (277)
.|+.|++....|+. .++.+.-+++..+
T Consensus 74 wC~~C~~~~p~l~~l~~~~~~vi~V~~~~~ 103 (173)
T TIGR00385 74 WCPPCRAEHPYLNELAKDGLPIVGVDYKDQ 103 (173)
T ss_pred cCHHHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 46899976555544 4788888877543
No 316
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=44.76 E-value=19 Score=24.65 Aligned_cols=9 Identities=33% Similarity=0.634 Sum_probs=5.1
Q ss_pred ceeCCCCCc
Q 048504 257 PKRCLECNE 265 (277)
Q Consensus 257 ~~rC~~CNE 265 (277)
..+||.|..
T Consensus 21 ~~~Cp~CG~ 29 (46)
T PRK00398 21 GVRCPYCGY 29 (46)
T ss_pred ceECCCCCC
Confidence 456666653
No 317
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=44.70 E-value=72 Score=30.45 Aligned_cols=55 Identities=15% Similarity=0.319 Sum_probs=36.6
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHH-------hCC--CeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE--EeCCEE
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFR-------GFR--VWVDERDVSMDSAYKKELQCVFGGKNVTLPQV--FIRGKH 197 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~-------~~g--V~y~ErDVs~d~~~reELke~lG~~~~tvPqV--FI~G~~ 197 (277)
+|.|+.+|| +.|+++...+. ..+ |.+..+|.+.+. ++.+.++- ..+|.+ |-+|+.
T Consensus 22 ~v~f~a~wC------~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~----~l~~~~~i--~~~Pt~~~~~~g~~ 87 (462)
T TIGR01130 22 LVEFYAPWC------GHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK----DLAQKYGV--SGYPTLKIFRNGED 87 (462)
T ss_pred EEEEECCCC------HHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH----HHHHhCCC--ccccEEEEEeCCcc
Confidence 677777776 69997765443 344 778888887764 45555654 678987 445653
No 318
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=44.65 E-value=1.8e+02 Score=24.74 Aligned_cols=63 Identities=21% Similarity=0.215 Sum_probs=41.9
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHh----CC---CeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE--EeCCEEEec
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRG----FR---VWVDERDVSMDSAYKKELQCVFGGKNVTLPQV--FIRGKHVGN 200 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~----~g---V~y~ErDVs~d~~~reELke~lG~~~~tvPqV--FI~G~~IGG 200 (277)
..|||.++- .+-+|....+--+|.. ++ |.+..+|++.++ +|...+|- ..+|.+ |=||+++|-
T Consensus 36 ~~vl~~~gd---p~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~----~LA~~fgV--~siPTLl~FkdGk~v~~ 106 (132)
T PRK11509 36 DGVVLLSSD---PKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSE----AIGDRFGV--FRFPATLVFTGGNYRGV 106 (132)
T ss_pred cEEEEeCCC---CCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCH----HHHHHcCC--ccCCEEEEEECCEEEEE
Confidence 456665543 2456666655555543 32 778889998775 56666765 789987 669998865
Q ss_pred h
Q 048504 201 A 201 (277)
Q Consensus 201 ~ 201 (277)
.
T Consensus 107 i 107 (132)
T PRK11509 107 L 107 (132)
T ss_pred E
Confidence 4
No 319
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=44.47 E-value=15 Score=38.89 Aligned_cols=43 Identities=26% Similarity=0.526 Sum_probs=28.2
Q ss_pred CCCCCCCCccceEe----CCCCCCcceeeeCCC--Ccce-----eCCCCCcCce
Q 048504 226 GFVCGSCGDVRFVP----CGNCSGSRKVFDEAD--GVPK-----RCLECNENGL 268 (277)
Q Consensus 226 ~~~C~~CGg~rfVp----C~~C~GS~Kv~~~~~--~~~~-----rC~~CNEnGL 268 (277)
..+|.-|.|.+-|+ |+.|+|.-|++.-+. ..+. -|++|-.++-
T Consensus 53 ~~pc~~c~gkG~V~v~~~c~~c~G~gkv~~c~~cG~~~~~~~~~lc~~c~~~~~ 106 (715)
T COG1107 53 EIPCPKCRGKGTVTVYDTCPECGGTGKVLTCDICGDIIVPWEEGLCPECRRKPK 106 (715)
T ss_pred CCCCCeeccceeEEEEeecccCCCceeEEeeccccceecCcccccChhHhhCCc
Confidence 35889998887665 999999988764321 1122 3777766554
No 320
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=43.97 E-value=27 Score=41.24 Aligned_cols=51 Identities=24% Similarity=0.424 Sum_probs=32.5
Q ss_pred EEechhHHHHHHhhccHHHHhcCCCCC-----CCCCCCCCCCccceE------------eCCCCCCcce
Q 048504 197 HVGNADVLKSMYETGELARVLDGFPRR-----QPGFVCGSCGDVRFV------------PCGNCSGSRK 248 (277)
Q Consensus 197 ~IGG~del~~L~EsGeL~klL~~~~~~-----~~~~~C~~CGg~rfV------------pC~~C~GS~K 248 (277)
|+|=+|++++|+-.=...+. .++.+. .+++.|+.|.|.+.+ +|+.|+|.+-
T Consensus 1574 Y~g~fd~IR~lFA~~~~ak~-rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~ 1641 (1809)
T PRK00635 1574 YFDIAPSLRNFYASLTQAKA-LNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRI 1641 (1809)
T ss_pred hhhhHHHHHHHHhcCHHHHH-cCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCC
Confidence 66677888887754333332 233221 235779999988754 5888888764
No 321
>smart00594 UAS UAS domain.
Probab=43.71 E-value=1.2e+02 Score=24.29 Aligned_cols=55 Identities=18% Similarity=0.272 Sum_probs=32.5
Q ss_pred cEEEEEecCCCCCCCChhHHH----------HHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE-EeC
Q 048504 130 RIVVYLTSLRGIRRTFEDCYA----------VRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQV-FIR 194 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~----------Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqV-FI~ 194 (277)
.++||..+ ..|++|.. |.++|+. .+-+-..|+..... .+|...++. .++|.+ ||+
T Consensus 29 ~~lv~~~~-----~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~~~eg--~~l~~~~~~--~~~P~~~~l~ 94 (122)
T smart00594 29 LLWLYLHS-----QDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVDTSEG--QRVSQFYKL--DSFPYVAIVD 94 (122)
T ss_pred CEEEEEeC-----CCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCCChhH--HHHHHhcCc--CCCCEEEEEe
Confidence 46666555 24678874 4445544 23344578876544 356667765 689988 454
No 322
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=43.18 E-value=28 Score=33.73 Aligned_cols=13 Identities=23% Similarity=0.861 Sum_probs=6.9
Q ss_pred ccceEeCCCCCCc
Q 048504 234 DVRFVPCGNCSGS 246 (277)
Q Consensus 234 g~rfVpC~~C~GS 246 (277)
|.||.-|..|...
T Consensus 209 G~RyL~CslC~te 221 (309)
T PRK03564 209 GLRYLHCNLCESE 221 (309)
T ss_pred CceEEEcCCCCCc
Confidence 3456666655543
No 323
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=43.13 E-value=1.7e+02 Score=24.14 Aligned_cols=64 Identities=16% Similarity=0.139 Sum_probs=40.0
Q ss_pred cEEEEEe--cCCCCCCCChhHHHHHHHHHh-C-CCeEEEEECCCCHH-HHHHHHHHhCCCCCCCcEE--EeCCE
Q 048504 130 RIVVYLT--SLRGIRRTFEDCYAVRMIFRG-F-RVWVDERDVSMDSA-YKKELQCVFGGKNVTLPQV--FIRGK 196 (277)
Q Consensus 130 kVVLYtt--SlcgiR~Tc~~C~~Vk~iL~~-~-gV~y~ErDVs~d~~-~reELke~lG~~~~tvPqV--FI~G~ 196 (277)
-+|-|.. +||+ + -|.|.+.-.-+.. - .|.+-++|++...+ .-.+|.++.|-....+|.| |.+|.
T Consensus 21 vlV~F~A~~Pwc~--k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~~g~ 91 (116)
T cd03007 21 SLVKFDTAYPYGE--K-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFHGGD 91 (116)
T ss_pred EEEEEeCCCCCCC--C-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEeCCC
Confidence 3678999 7776 2 3678777644433 2 47788899853111 1256777876521279987 66773
No 324
>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair]
Probab=42.93 E-value=79 Score=30.64 Aligned_cols=151 Identities=24% Similarity=0.325 Sum_probs=82.5
Q ss_pred hhhhhhccCCCCCCccCCCCCCCCchhhhccccccccccCCcccccc--ccccCCCCCCcEEEEEecCCCCCCCChhHHH
Q 048504 73 VKQLRNLFEPKKSSKKINLNEPESPQQHHLIKLTKPVKSLSLCYNNE--SSIRLPGTEDRIVVYLTSLRGIRRTFEDCYA 150 (277)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~~~~~~--~~i~~~~~~~kVVLYttSlcgiR~Tc~~C~~ 150 (277)
|..+-.|||.++....++ +..|.+.=+-+..|+.+ ......-...+++|++-+-= ...+|=..
T Consensus 121 v~ei~~lm~~~~~~~~~~------------rt~lagals~~L~yi~~~~ke~~~~~lkSRilV~t~t~d---~~~qyi~~ 185 (314)
T KOG2487|consen 121 VEEIYRLMEHPDKYDVGD------------RTVLAGALSDALGYINRLHKEEASEKLKSRILVFTLTRD---RALQYIPY 185 (314)
T ss_pred HHHHHHHHhCcccccccc------------ceeeccchhhccchHhhhhhhhhhhhhhceEEEEEechH---HHhhhhhH
Confidence 677888899888665432 22333333333333321 11122233568899887421 11223333
Q ss_pred HHHHH--HhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhHHH-----HHHhhccHHHHhcCCCCC
Q 048504 151 VRMIF--RGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLK-----SMYETGELARVLDGFPRR 223 (277)
Q Consensus 151 Vk~iL--~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~del~-----~L~EsGeL~klL~~~~~~ 223 (277)
+.=|| +.++|+++.+.+..|..+.+.-.+.+|.....+|+- +.+. .|.-++++++.|-.-+..
T Consensus 186 MNciFaAqKq~I~Idv~~l~~~s~~LqQa~D~TGG~YL~v~~~----------~gLLqyLlt~~~~D~~~R~~l~kpnh~ 255 (314)
T KOG2487|consen 186 MNCIFAAQKQNIPIDVVSLGGDSGFLQQACDITGGDYLHVEKP----------DGLLQYLLTLLLTDPELRAVLSKPNHN 255 (314)
T ss_pred HHHHHHHHhcCceeEEEEecCCchHHHHHHhhcCCeeEecCCc----------chHHHHHHHHhcCCcchhhhccCCCCC
Confidence 34444 357899999999999888777778887532222211 2222 245566777766432211
Q ss_pred ---------------CCCCCCCCCCcc--ceEe-CCCCCCcce
Q 048504 224 ---------------QPGFVCGSCGDV--RFVP-CGNCSGSRK 248 (277)
Q Consensus 224 ---------------~~~~~C~~CGg~--rfVp-C~~C~GS~K 248 (277)
.-+.+|.-|-.. +|+| |..|+...+
T Consensus 256 ~VDfRAtC~CH~~lv~iG~VCSVCLSVfC~~~PiC~~C~s~F~ 298 (314)
T KOG2487|consen 256 SVDFRATCYCHNRLVLIGFVCSVCLSVFCRFVPICKTCKSKFS 298 (314)
T ss_pred CcCcceeeeeecceeeeeeehHHHHHHhhCCCCccchhhhhcc
Confidence 115677777655 5555 777776543
No 325
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=42.48 E-value=13 Score=25.04 Aligned_cols=28 Identities=25% Similarity=0.565 Sum_probs=16.2
Q ss_pred EeCCCCCCcceeee--------CCCCcceeCCCCCc
Q 048504 238 VPCGNCSGSRKVFD--------EADGVPKRCLECNE 265 (277)
Q Consensus 238 VpC~~C~GS~Kv~~--------~~~~~~~rC~~CNE 265 (277)
+.|++|+...=++. |....+.+|..|+.
T Consensus 1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~ 36 (39)
T PF01096_consen 1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGH 36 (39)
T ss_dssp S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTE
T ss_pred CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCC
Confidence 46888887655542 12235888999874
No 326
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=42.31 E-value=1.3e+02 Score=25.74 Aligned_cols=68 Identities=10% Similarity=-0.033 Sum_probs=41.3
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCC---------CCCCcEEEeCCE
Q 048504 127 TEDRIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGK---------NVTLPQVFIRGK 196 (277)
Q Consensus 127 ~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~---------~~tvPqVFI~G~ 196 (277)
+..+++|..|..-.--.....-.++-..++..||.+.-+=|.. ....+|.++.... ..-+|++||+++
T Consensus 108 ~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~--~~~~~L~~IA~~~~~~~~~~~~~~l~~~~~~~~~ 184 (186)
T cd01480 108 KENKFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGS--QNEEPLSRIACDGKSALYRENFAELLWSFFIDDE 184 (186)
T ss_pred CCceEEEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecCc--cchHHHHHHHcCCcchhhhcchhhhccccccccc
Confidence 3456777777653200112233455566789999988887865 3445677776321 145788998875
No 327
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=42.11 E-value=15 Score=36.57 Aligned_cols=56 Identities=18% Similarity=0.437 Sum_probs=42.7
Q ss_pred CCEEEechhHHHHHHhhccHHHHh--cCCCCCCCCCCCCCCCccceE-----------eCCCCCCccee
Q 048504 194 RGKHVGNADVLKSMYETGELARVL--DGFPRRQPGFVCGSCGDVRFV-----------PCGNCSGSRKV 249 (277)
Q Consensus 194 ~G~~IGG~del~~L~EsGeL~klL--~~~~~~~~~~~C~~CGg~rfV-----------pC~~C~GS~Kv 249 (277)
+|..+-|.+++.+..+.|-++.|| +.+........|..||...-+ .|+.|++...+
T Consensus 286 ~g~avyG~~eV~~ALe~GAVetLLV~d~l~~~r~~~rc~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (403)
T TIGR03676 286 GGLAAYGEEEVRKALEMGAVDTLLISEDLRKIRVTFKCPNCGYEEEKTVKPEEGDKSEACPKCGSELEI 354 (403)
T ss_pred CCcEEEcHHHHHHHHHhCCCcEEEEEccccceeEEEEcCCCCcceeeecccccccccccCcccCccccc
Confidence 377899999999999999999986 455554456789999875432 38888888543
No 328
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=41.67 E-value=26 Score=24.04 Aligned_cols=24 Identities=25% Similarity=0.643 Sum_probs=14.8
Q ss_pred CCCCCCcceeeeCCCCcceeCCCCC
Q 048504 240 CGNCSGSRKVFDEADGVPKRCLECN 264 (277)
Q Consensus 240 C~~C~GS~Kv~~~~~~~~~rC~~CN 264 (277)
|+.|+.. +++.-.....-+|-.|.
T Consensus 21 CP~Cg~~-~~~~~~~~~~~~C~~C~ 44 (46)
T PF12760_consen 21 CPHCGST-KHYRLKTRGRYRCKACR 44 (46)
T ss_pred CCCCCCe-eeEEeCCCCeEECCCCC
Confidence 8888777 55443333466777764
No 329
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=41.14 E-value=27 Score=30.78 Aligned_cols=53 Identities=19% Similarity=0.192 Sum_probs=31.6
Q ss_pred HHHHHHHHhCCCeEEEEECCC-CHHHHHHHH------HHhCCCCCCCcEEEeCCEEEechhH
Q 048504 149 YAVRMIFRGFRVWVDERDVSM-DSAYKKELQ------CVFGGKNVTLPQVFIRGKHVGNADV 203 (277)
Q Consensus 149 ~~Vk~iL~~~gV~y~ErDVs~-d~~~reELk------e~lG~~~~tvPqVFI~G~~IGG~de 203 (277)
...+.++...|+.-++.+-.. +..+.+.+. +..| ...+|.++|||+|+=+...
T Consensus 124 ~~L~~~a~~~Gld~~~f~~~l~s~~~~~~v~~~~~~a~~~g--I~gtPtfiInGky~v~~~~ 183 (207)
T PRK10954 124 ADIRDVFIKAGVKGEDYDAAWNSFVVKSLVAQQEKAAADLQ--LRGVPAMFVNGKYMVNNQG 183 (207)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcC--CCCCCEEEECCEEEEcccc
Confidence 467778888888754332222 223333322 2234 3789999999999755443
No 330
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=40.97 E-value=1.3e+02 Score=25.68 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=25.1
Q ss_pred CCcEEEEEecCCCCCCCChhHHHHHHHHH----hCCCeEEEEECCC
Q 048504 128 EDRIVVYLTSLRGIRRTFEDCYAVRMIFR----GFRVWVDERDVSM 169 (277)
Q Consensus 128 ~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~----~~gV~y~ErDVs~ 169 (277)
...|+.|..+|| +.|++..-.|+ .+++.+.-++++.
T Consensus 51 ~~~lvnFWAsWC------ppCr~e~P~L~~l~~~~~~~Vi~Vs~d~ 90 (153)
T TIGR02738 51 DYALVFFYQSTC------PYCHQFAPVLKRFSQQFGLPVYAFSLDG 90 (153)
T ss_pred CCEEEEEECCCC------hhHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 345889999886 79997666664 4577776666654
No 331
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=40.81 E-value=62 Score=27.12 Aligned_cols=53 Identities=21% Similarity=0.342 Sum_probs=39.7
Q ss_pred CCCCChhHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCE
Q 048504 141 IRRTFEDCYAVRMIFRGF-----RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGK 196 (277)
Q Consensus 141 iR~Tc~~C~~Vk~iL~~~-----gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~ 196 (277)
.|-.|++|..+.-+|..+ .+.+..+|... =|.++-+++|...-++|++..++.
T Consensus 20 ~~f~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~R---PR~~vi~llGE~~QslPvLVL~~~ 77 (112)
T PF11287_consen 20 QRFYCPHCAAIEGLLASFPDLRERLDVRRVDFPR---PRQAVIALLGEANQSLPVLVLADG 77 (112)
T ss_pred ceEECCchHHHHhHHhhChhhhhcccEEEeCCCC---chHHHHHHhChhccCCCEEEeCCC
Confidence 345689999999999875 45566666543 367888999976688999977653
No 332
>PRK04023 DNA polymerase II large subunit; Validated
Probab=40.66 E-value=19 Score=40.15 Aligned_cols=15 Identities=20% Similarity=0.104 Sum_probs=11.5
Q ss_pred HHHHHHHHhCCCeEE
Q 048504 149 YAVRMIFRGFRVWVD 163 (277)
Q Consensus 149 ~~Vk~iL~~~gV~y~ 163 (277)
..+|.+|+.++|+..
T Consensus 505 ~~~k~~LE~L~v~H~ 519 (1121)
T PRK04023 505 EGVKRILEKLGVPHR 519 (1121)
T ss_pred HHHHHHHHHhCCceE
Confidence 378888888888753
No 333
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=40.63 E-value=21 Score=24.86 Aligned_cols=26 Identities=27% Similarity=0.607 Sum_probs=13.3
Q ss_pred eCCCCCCcceeeeCCCCcceeCCCCCcCc
Q 048504 239 PCGNCSGSRKVFDEADGVPKRCLECNENG 267 (277)
Q Consensus 239 pC~~C~GS~Kv~~~~~~~~~rC~~CNEnG 267 (277)
.|..|+..-.+ +....+||++|.-.=
T Consensus 4 ~C~~Cg~~~~~---~~~~~irC~~CG~rI 29 (44)
T smart00659 4 ICGECGRENEI---KSKDVVRCRECGYRI 29 (44)
T ss_pred ECCCCCCEeec---CCCCceECCCCCceE
Confidence 36666653222 223357777776543
No 334
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=40.61 E-value=17 Score=24.12 Aligned_cols=26 Identities=23% Similarity=0.557 Sum_probs=12.3
Q ss_pred CCCCCCcce--eeeCCCCcceeCCCCCc
Q 048504 240 CGNCSGSRK--VFDEADGVPKRCLECNE 265 (277)
Q Consensus 240 C~~C~GS~K--v~~~~~~~~~rC~~CNE 265 (277)
|++|++.-. +...++.....|+.|..
T Consensus 3 C~~CG~~l~~~ip~gd~r~R~vC~~Cg~ 30 (34)
T PF14803_consen 3 CPQCGGPLERRIPEGDDRERLVCPACGF 30 (34)
T ss_dssp -TTT--B-EEE--TT-SS-EEEETTTTE
T ss_pred cccccChhhhhcCCCCCccceECCCCCC
Confidence 778887733 44444455788888863
No 335
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=40.47 E-value=28 Score=28.76 Aligned_cols=22 Identities=23% Similarity=0.745 Sum_probs=13.7
Q ss_pred CCCCCCCCcc------ceEeCCCCCCcc
Q 048504 226 GFVCGSCGDV------RFVPCGNCSGSR 247 (277)
Q Consensus 226 ~~~C~~CGg~------rfVpC~~C~GS~ 247 (277)
...|..||-. .|..||.|++..
T Consensus 71 ~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~ 98 (117)
T PRK00564 71 ELECKDCSHVFKPNALDYGVCEKCHSKN 98 (117)
T ss_pred EEEhhhCCCccccCCccCCcCcCCCCCc
Confidence 4578888732 344488887654
No 336
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=40.27 E-value=9.4 Score=41.62 Aligned_cols=43 Identities=26% Similarity=0.648 Sum_probs=0.0
Q ss_pred CCCCCCCCccceE-eCCCCCCcceeeeCCCCcceeCCCCCcC-ceeeCCCCC
Q 048504 226 GFVCGSCGDVRFV-PCGNCSGSRKVFDEADGVPKRCLECNEN-GLIRCPDCC 275 (277)
Q Consensus 226 ~~~C~~CGg~rfV-pC~~C~GS~Kv~~~~~~~~~rC~~CNEn-GLvrCp~C~ 275 (277)
...|..||-..|- .|+.|++.. ....+|+.|+.. .--.||.|-
T Consensus 655 ~r~Cp~Cg~~t~~~~Cp~CG~~T-------~~~~~Cp~C~~~~~~~~C~~C~ 699 (900)
T PF03833_consen 655 RRRCPKCGKETFYNRCPECGSHT-------EPVYVCPDCGIEVEEDECPKCG 699 (900)
T ss_dssp ----------------------------------------------------
T ss_pred cccCcccCCcchhhcCcccCCcc-------ccceeccccccccCcccccccc
Confidence 4789999977654 499998763 235667777643 223677774
No 337
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=40.08 E-value=62 Score=25.38 Aligned_cols=57 Identities=14% Similarity=0.181 Sum_probs=32.7
Q ss_pred CcEEEEEecCCCCCCCChhHHHHH-HHHHhCC--------CeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE-EeC
Q 048504 129 DRIVVYLTSLRGIRRTFEDCYAVR-MIFRGFR--------VWVDERDVSMDSAYKKELQCVFGGKNVTLPQV-FIR 194 (277)
Q Consensus 129 ~kVVLYttSlcgiR~Tc~~C~~Vk-~iL~~~g--------V~y~ErDVs~d~~~reELke~lG~~~~tvPqV-FI~ 194 (277)
..|+||..+ ..|++|+... .+|.... .-+...|+... + ..++...++. ..+|.+ ||+
T Consensus 18 K~llv~~~~-----~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~-e-~~~~~~~~~~--~~~P~~~~i~ 84 (114)
T cd02958 18 KWLLVYLQS-----EDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSS-E-GQRFLQSYKV--DKYPHIAIID 84 (114)
T ss_pred ceEEEEEec-----CCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCc-c-HHHHHHHhCc--cCCCeEEEEe
Confidence 457777776 3578888653 3443322 22334677542 2 2456666764 679988 553
No 338
>PRK04011 peptide chain release factor 1; Provisional
Probab=39.89 E-value=16 Score=36.36 Aligned_cols=56 Identities=18% Similarity=0.457 Sum_probs=41.2
Q ss_pred CCEEEechhHHHHHHhhccHHHHh--cCCCCCCCCCCCCCCCccceE-----------eCCCCCCccee
Q 048504 194 RGKHVGNADVLKSMYETGELARVL--DGFPRRQPGFVCGSCGDVRFV-----------PCGNCSGSRKV 249 (277)
Q Consensus 194 ~G~~IGG~del~~L~EsGeL~klL--~~~~~~~~~~~C~~CGg~rfV-----------pC~~C~GS~Kv 249 (277)
+|..+-|.+++.+..+.|-++.|| +.+.+......|..||-..-. .|+.|++...+
T Consensus 294 ~g~avyG~~~V~~Ale~GAVetLLV~d~l~~~r~~~~c~~c~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 362 (411)
T PRK04011 294 GGLAVYGEEEVRKALEMGAVDTLLISEDLRKDRVTYKCPNCGYEEEKTVKRREELPEKTCPKCGSELEI 362 (411)
T ss_pred CCcEEEcHHHHHHHHHcCCceEEEEeccccceeEEEEcCCCCcceeeecccccccccccCcccCccccc
Confidence 367899999999999999999986 455555555678888754322 47777776444
No 339
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=39.51 E-value=21 Score=25.72 Aligned_cols=53 Identities=8% Similarity=-0.004 Sum_probs=27.7
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCE
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGK 196 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~ 196 (277)
+.||++..- -....++.+|++.||++...|-.+... .-. .|. ...+.|+|...
T Consensus 1 ~~l~~~~~~------~ea~~i~~~L~~~gI~~~v~~~~~~~~----~g~-~g~--~~~~~v~V~~~ 53 (67)
T PF09413_consen 1 KKLYTAGDP------IEAELIKGLLEENGIPAFVKNEHMSGY----AGE-PGT--GGQVEVYVPEE 53 (67)
T ss_dssp EEEEEE--H------HHHHHHHHHHHHTT--EE--S----SS--------S----SSSEEEEEEGG
T ss_pred CEEEEcCCH------HHHHHHHHHHHhCCCcEEEECCccchh----hcc-cCc--cCceEEEECHH
Confidence 456777642 478899999999999999887664422 111 333 34488888764
No 340
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=39.29 E-value=20 Score=37.89 Aligned_cols=14 Identities=36% Similarity=0.852 Sum_probs=10.7
Q ss_pred eEeCCCCCCcceee
Q 048504 237 FVPCGNCSGSRKVF 250 (277)
Q Consensus 237 fVpC~~C~GS~Kv~ 250 (277)
=+||+.|.|.-++-
T Consensus 53 ~~pc~~c~gkG~V~ 66 (715)
T COG1107 53 EIPCPKCRGKGTVT 66 (715)
T ss_pred CCCCCeeccceeEE
Confidence 36899999887763
No 341
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=39.03 E-value=22 Score=39.18 Aligned_cols=24 Identities=38% Similarity=0.815 Sum_probs=18.4
Q ss_pred CCCCCCCCCccce------------EeCCCCCCcce
Q 048504 225 PGFVCGSCGDVRF------------VPCGNCSGSRK 248 (277)
Q Consensus 225 ~~~~C~~CGg~rf------------VpC~~C~GS~K 248 (277)
+.+.|..|.|.++ ++|+.|+|.+-
T Consensus 737 ~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~ 772 (943)
T PRK00349 737 KGGRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRY 772 (943)
T ss_pred CCCCCCcccccceEEEEeccCCCccccCccccCccc
Confidence 3578999988754 46999998865
No 342
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=38.95 E-value=58 Score=28.92 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=49.6
Q ss_pred cccCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHHhC-CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEe
Q 048504 121 SIRLPGTEDRIVVYLTSLRGIRRTFEDCYAVRMIFRGF-RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVG 199 (277)
Q Consensus 121 ~i~~~~~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~-gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IG 199 (277)
.+..++...+-++|-.+.... .=++-..++..|+.+ |+.+..+++..+++..+.|. ..=.||+.| |
T Consensus 23 ~l~~~~~~~~~i~~IptAs~~--~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~--------~ad~I~l~G---G 89 (212)
T cd03146 23 LLLSLTKARPKVLFVPTASGD--RDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALL--------EADVIYVGG---G 89 (212)
T ss_pred HHHHhccCCCeEEEECCCCCC--HHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHh--------cCCEEEECC---c
Confidence 344444454555555554432 125678899999999 99998888765433333322 233577777 5
Q ss_pred chhHHHHHHhhccHHHHhcC
Q 048504 200 NADVLKSMYETGELARVLDG 219 (277)
Q Consensus 200 G~del~~L~EsGeL~klL~~ 219 (277)
....+.+..+.-.|..+|+.
T Consensus 90 ~~~~~~~~l~~~~l~~~l~~ 109 (212)
T cd03146 90 NTFNLLAQWREHGLDAILKA 109 (212)
T ss_pred hHHHHHHHHHHcCHHHHHHH
Confidence 55555543333356666654
No 343
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=38.90 E-value=28 Score=23.56 Aligned_cols=27 Identities=30% Similarity=0.641 Sum_probs=17.6
Q ss_pred eCCCCCCcceeee--------CCCCcceeCCCCCc
Q 048504 239 PCGNCSGSRKVFD--------EADGVPKRCLECNE 265 (277)
Q Consensus 239 pC~~C~GS~Kv~~--------~~~~~~~rC~~CNE 265 (277)
+|++|++..-+|. |....+-.|..|+.
T Consensus 2 ~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~ 36 (40)
T smart00440 2 PCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGH 36 (40)
T ss_pred cCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCC
Confidence 6888875554542 22346889999874
No 344
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=38.90 E-value=1.4e+02 Score=24.48 Aligned_cols=28 Identities=11% Similarity=-0.052 Sum_probs=17.1
Q ss_pred CChhHHHHHHHHH-------hCCCeEEEEECCCCH
Q 048504 144 TFEDCYAVRMIFR-------GFRVWVDERDVSMDS 171 (277)
Q Consensus 144 Tc~~C~~Vk~iL~-------~~gV~y~ErDVs~d~ 171 (277)
.|+.|......|. ..++.+..++.+.+.
T Consensus 72 ~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~ 106 (173)
T PRK03147 72 WCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETE 106 (173)
T ss_pred cCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCH
Confidence 4689986544332 235777777776554
No 345
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=38.45 E-value=33 Score=33.15 Aligned_cols=11 Identities=27% Similarity=0.987 Sum_probs=5.8
Q ss_pred ceEeCCCCCCc
Q 048504 236 RFVPCGNCSGS 246 (277)
Q Consensus 236 rfVpC~~C~GS 246 (277)
||.-|..|...
T Consensus 209 RyL~CslC~te 219 (305)
T TIGR01562 209 RYLSCSLCATE 219 (305)
T ss_pred eEEEcCCCCCc
Confidence 55555555443
No 346
>PLN02309 5'-adenylylsulfate reductase
Probab=38.36 E-value=61 Score=32.93 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=35.3
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHHhC-------CCeEEEEECC-CCHHHHHHHHHHhCCCCCCCcEEEe
Q 048504 129 DRIVVYLTSLRGIRRTFEDCYAVRMIFRGF-------RVWVDERDVS-MDSAYKKELQCVFGGKNVTLPQVFI 193 (277)
Q Consensus 129 ~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~-------gV~y~ErDVs-~d~~~reELke~lG~~~~tvPqVFI 193 (277)
.-||.|+.+|| +.|+.+...|+.+ +|.|..+|++ .+..+ ..+.++- ..+|.|++
T Consensus 367 ~vlV~FyApWC------~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~l---a~~~~~I--~~~PTil~ 428 (457)
T PLN02309 367 PWLVVLYAPWC------PFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEF---AKQELQL--GSFPTILL 428 (457)
T ss_pred eEEEEEECCCC------hHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHH---HHhhCCC--ceeeEEEE
Confidence 34778888886 6999888777542 4777788877 43322 2233543 68998843
No 347
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=38.10 E-value=8.9 Score=40.09 Aligned_cols=120 Identities=18% Similarity=0.331 Sum_probs=73.1
Q ss_pred ChhHHHHHHHHHhCCCe--EEEEECCCC----HH-------HHHHHHHHhC-------CCCCCCcEEEeCCEEEechhHH
Q 048504 145 FEDCYAVRMIFRGFRVW--VDERDVSMD----SA-------YKKELQCVFG-------GKNVTLPQVFIRGKHVGNADVL 204 (277)
Q Consensus 145 c~~C~~Vk~iL~~~gV~--y~ErDVs~d----~~-------~reELke~lG-------~~~~tvPqVFI~G~~IGG~del 204 (277)
++-|..++.+|+...=. |...|+..+ .. +|+.|+.+-+ .....+++.+..-+|+---.++
T Consensus 393 y~Vs~~a~~~L~~ir~~Pl~~~q~ln~~Ly~~~~~L~~v~~lR~qL~~m~~~l~~Cr~a~~~~~~~~~~~~~yL~e~~~~ 472 (580)
T KOG1829|consen 393 YPVSNFAKQFLDEIREQPLFNLQDLNPDLYSKVKALAEVKELRQQLQHIEGYLKTCRFASLKLLRQRLAVRRYLTESPHL 472 (580)
T ss_pred cccchhHHHHHHHHhccchhhhcccChHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhhhhhhhhccCchh
Confidence 56788889998886432 444555432 11 2222222211 0014577777777777655555
Q ss_pred HHH-----HhhccHHHHhcCCCCC--CCCCCCCCCCccceEeCCCCCCcceeeeCCCCcceeCCCCCc
Q 048504 205 KSM-----YETGELARVLDGFPRR--QPGFVCGSCGDVRFVPCGNCSGSRKVFDEADGVPKRCLECNE 265 (277)
Q Consensus 205 ~~L-----~EsGeL~klL~~~~~~--~~~~~C~~CGg~rfVpC~~C~GS~Kv~~~~~~~~~rC~~CNE 265 (277)
..| .+.|.|..+|+.+-+. ..-..|.-|-+.+|| |.-|....-+|--......||..|.-
T Consensus 473 ~Sl~DL~~i~~g~L~~~l~~~~k~~~~HV~~C~lC~~~gfi-Ce~Cq~~~iiyPF~~~~~~rC~~C~a 539 (580)
T KOG1829|consen 473 FSLKDLQDIQDGALLRLLNELTKLSSKHVKECDLCTGKGFI-CELCQHNDIIYPFETRNTRRCSTCLA 539 (580)
T ss_pred hhhhhHHHhhcccHHHHHHHHHHHhhhhhhhchhhccCeee-eeeccCCCcccccccccceeHHHHHH
Confidence 443 4568888888765332 223579999999986 99997776676543345788888864
No 348
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=37.76 E-value=16 Score=30.70 Aligned_cols=27 Identities=30% Similarity=0.715 Sum_probs=21.1
Q ss_pred ceEeCCCCCCcceeeeCCCCcceeCCCCCcC
Q 048504 236 RFVPCGNCSGSRKVFDEADGVPKRCLECNEN 266 (277)
Q Consensus 236 rfVpC~~C~GS~Kv~~~~~~~~~rC~~CNEn 266 (277)
--|.||+|+--.|.... .-+|..|++.
T Consensus 68 v~V~CP~C~K~TKmLGr----~D~CM~C~~p 94 (114)
T PF11023_consen 68 VQVECPNCGKQTKMLGR----VDACMHCKEP 94 (114)
T ss_pred eeeECCCCCChHhhhch----hhccCcCCCc
Confidence 45679999988888764 3589999985
No 349
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=37.05 E-value=61 Score=31.11 Aligned_cols=71 Identities=21% Similarity=0.292 Sum_probs=46.0
Q ss_pred cccCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE--Ee
Q 048504 121 SIRLPGTEDRIVVYLTSLRGIRRTFEDCYAVRMIFRGF-----RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQV--FI 193 (277)
Q Consensus 121 ~i~~~~~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~-----gV~y~ErDVs~d~~~reELke~lG~~~~tvPqV--FI 193 (277)
.+...+...=||=||.+||| .|+++--+|..+ +.-|..+||+.-... ..-.| ....|.. |.
T Consensus 15 ~ls~ag~k~v~Vdfta~wCG------PCk~IaP~Fs~lankYp~aVFlkVdVd~c~~t----aa~~g--V~amPTFiff~ 82 (288)
T KOG0908|consen 15 ELSAAGGKLVVVDFTASWCG------PCKRIAPIFSDLANKYPGAVFLKVDVDECRGT----AATNG--VNAMPTFIFFR 82 (288)
T ss_pred hhhccCceEEEEEEEecccc------hHHhhhhHHHHhhhhCcccEEEEEeHHHhhch----hhhcC--cccCceEEEEe
Confidence 34444444557789999997 999999999876 444778888632211 11223 3567765 78
Q ss_pred CCEEE---echhH
Q 048504 194 RGKHV---GNADV 203 (277)
Q Consensus 194 ~G~~I---GG~de 203 (277)
||.-| -|+|.
T Consensus 83 ng~kid~~qGAd~ 95 (288)
T KOG0908|consen 83 NGVKIDQIQGADA 95 (288)
T ss_pred cCeEeeeecCCCH
Confidence 99765 45554
No 350
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=36.87 E-value=29 Score=25.81 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=15.6
Q ss_pred EEeCCEEEechhHHHHHHhh
Q 048504 191 VFIRGKHVGNADVLKSMYET 210 (277)
Q Consensus 191 VFI~G~~IGG~del~~L~Es 210 (277)
||+||.+||=.++-.+|.+.
T Consensus 1 VFlNG~~iG~~~~p~~l~~~ 20 (63)
T PF04566_consen 1 VFLNGVWIGIHSDPEELVKT 20 (63)
T ss_dssp EEETTEEEEEESSHHHHHHH
T ss_pred CEECCEEEEEEcCHHHHHHH
Confidence 79999999988876655443
No 351
>PF04236 Transp_Tc5_C: Tc5 transposase C-terminal domain; InterPro: IPR007350 This domain corresponds to a C-terminal cysteine rich region that probably binds to a metal ion and could be DNA-binding. It is found in association with the DDE superfamily (IPR004875 from INTERPRO) and the Tc5 transposase family (IPR004906 from INTERPRO). More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=36.32 E-value=24 Score=26.52 Aligned_cols=21 Identities=38% Similarity=0.841 Sum_probs=16.5
Q ss_pred CcceeCCC--CCcCceeeCCCCC
Q 048504 255 GVPKRCLE--CNENGLIRCPDCC 275 (277)
Q Consensus 255 ~~~~rC~~--CNEnGLvrCp~C~ 275 (277)
.....|.. |++.+.|+|+-|.
T Consensus 25 ~~~~~C~~~gC~~~s~I~C~~Ck 47 (63)
T PF04236_consen 25 NVAGDCDITGCNNTSFIRCAYCK 47 (63)
T ss_pred CCcCcCCCCCCCCcCEEEccccC
Confidence 34677877 9999999998885
No 352
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=36.09 E-value=1.3e+02 Score=25.16 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=18.8
Q ss_pred HHHHHHHHhCCCeEEEEECCCC
Q 048504 149 YAVRMIFRGFRVWVDERDVSMD 170 (277)
Q Consensus 149 ~~Vk~iL~~~gV~y~ErDVs~d 170 (277)
.++++.|+++|+.++.+|+...
T Consensus 3 ~~~~~~f~~~g~~v~~l~~~~~ 24 (154)
T PF03575_consen 3 EKFRKAFRKLGFEVDQLDLSDR 24 (154)
T ss_dssp HHHHHHHHHCT-EEEECCCTSC
T ss_pred HHHHHHHHHCCCEEEEEeccCC
Confidence 5789999999999999999875
No 353
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=35.83 E-value=1.1e+02 Score=27.11 Aligned_cols=62 Identities=23% Similarity=0.216 Sum_probs=42.6
Q ss_pred ChhHHHHHHHHHhCCCeEEEEECCCC--HHHHHHHHHHh---C-------CC-----------CCCCcEE--EeCCEEEe
Q 048504 145 FEDCYAVRMIFRGFRVWVDERDVSMD--SAYKKELQCVF---G-------GK-----------NVTLPQV--FIRGKHVG 199 (277)
Q Consensus 145 c~~C~~Vk~iL~~~gV~y~ErDVs~d--~~~reELke~l---G-------~~-----------~~tvPqV--FI~G~~IG 199 (277)
.+.=+.+-.+|+.+||+|+.+=++.| |+...++.+-. | .+ ..++|.| -|..+.++
T Consensus 15 ~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~lPViGVPv~s~~L~ 94 (162)
T COG0041 15 WDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPLPVIGVPVQSKALS 94 (162)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcCCCCeEeccCcccccc
Confidence 45567899999999999999999988 33333332211 1 00 1678887 46788888
Q ss_pred chhHHHH
Q 048504 200 NADVLKS 206 (277)
Q Consensus 200 G~del~~ 206 (277)
|.|.|..
T Consensus 95 GlDSL~S 101 (162)
T COG0041 95 GLDSLLS 101 (162)
T ss_pred chHHHHH
Confidence 9887654
No 354
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=35.00 E-value=81 Score=24.66 Aligned_cols=65 Identities=11% Similarity=0.089 Sum_probs=40.4
Q ss_pred CChhHHHHHHHHHhCCC--eEEEEECCCCHHHHHHHHHHhCC---CCCCCcEEEeCCE-EEechhHHHHHHhh
Q 048504 144 TFEDCYAVRMIFRGFRV--WVDERDVSMDSAYKKELQCVFGG---KNVTLPQVFIRGK-HVGNADVLKSMYET 210 (277)
Q Consensus 144 Tc~~C~~Vk~iL~~~gV--~y~ErDVs~d~~~reELke~lG~---~~~tvPqVFI~G~-~IGG~del~~L~Es 210 (277)
.|+.|.....++..+.. .+..+|+..+.+. ++.+..|. ...+.-.+.-+|+ ...|.+.+..+...
T Consensus 6 ~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~~ 76 (114)
T PF04134_consen 6 DCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQ--ALLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLRR 76 (114)
T ss_pred CCHhHHHHHHHHHhcCCCCCEEEEECCChhhh--hHHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHHH
Confidence 48999999999998864 5888888433221 11111221 1123333323776 88999998887655
No 355
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=34.83 E-value=23 Score=32.83 Aligned_cols=35 Identities=23% Similarity=0.609 Sum_probs=23.0
Q ss_pred HHHHhcCCCCCCCCCCCCCCCcc---ceEeCCCCCCcc
Q 048504 213 LARVLDGFPRRQPGFVCGSCGDV---RFVPCGNCSGSR 247 (277)
Q Consensus 213 L~klL~~~~~~~~~~~C~~CGg~---rfVpC~~C~GS~ 247 (277)
++++++..-..+|...|..||-. -+-.||.|++=.
T Consensus 341 ~~~~~~~~~~~~p~~~c~~cg~~~~~~~~~c~~c~~~~ 378 (389)
T PRK11788 341 LRDLVGEQLKRKPRYRCRNCGFTARTLYWHCPSCKAWE 378 (389)
T ss_pred HHHHHHHHHhCCCCEECCCCCCCCccceeECcCCCCcc
Confidence 44455443455677889999844 456699998653
No 356
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=34.63 E-value=51 Score=32.39 Aligned_cols=33 Identities=12% Similarity=0.039 Sum_probs=18.6
Q ss_pred hHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHH
Q 048504 147 DCYAVRMIFRGFRVWVDERDVSMDSAYKKELQC 179 (277)
Q Consensus 147 ~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke 179 (277)
.....+..|+.++|.|+..-=+.++.+.+..++
T Consensus 70 ~~~~~~~~~~~~~I~~D~F~rTt~~~h~~~v~~ 102 (391)
T PF09334_consen 70 YSAKFKELLEALNISYDRFIRTTDDRHKEFVQE 102 (391)
T ss_dssp HHHHHHHHHHHTT---SEEEETTSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcceeCCCCHHHHHHHHH
Confidence 456888899999999865433445555444333
No 357
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=34.61 E-value=73 Score=30.21 Aligned_cols=94 Identities=19% Similarity=0.182 Sum_probs=52.3
Q ss_pred hhhhhhccCCCCCCccCCCCCCCCchhhhccccccccccCCccccccccccCCCCCCcEEEEEecCCCCCCCChhHHHHH
Q 048504 73 VKQLRNLFEPKKSSKKINLNEPESPQQHHLIKLTKPVKSLSLCYNNESSIRLPGTEDRIVVYLTSLRGIRRTFEDCYAVR 152 (277)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~~~~~~~~i~~~~~~~kVVLYttSlcgiR~Tc~~C~~Vk 152 (277)
|..+-.|||.++..+ .+..+..+-|.|.++..+- -....-..+|+||+-+.+. +-.++-..+.
T Consensus 112 i~eiyrl~e~~~k~s--------------qr~~v~gams~glay~n~~-~~e~slkSriliftlsG~d--~~~qYip~mn 174 (296)
T COG5242 112 ITEIYRLIEHPHKNS--------------QRYDVGGAMSLGLAYCNHR-DEETSLKSRILIFTLSGRD--RKDQYIPYMN 174 (296)
T ss_pred HHHHHHHHhCccccc--------------ceeehhhhhhhhHHHHhhh-cccccccceEEEEEecCch--hhhhhchhhh
Confidence 567778899888632 1233444445565555310 0011123679999986532 1222222333
Q ss_pred HHH--HhCCCeEEEEECCCCHHHHHHHHHHhCC
Q 048504 153 MIF--RGFRVWVDERDVSMDSAYKKELQCVFGG 183 (277)
Q Consensus 153 ~iL--~~~gV~y~ErDVs~d~~~reELke~lG~ 183 (277)
=|| +.++|++....|..+..+.+.-.+.+|.
T Consensus 175 CiF~Aqk~~ipI~v~~i~g~s~fl~Q~~daTgG 207 (296)
T COG5242 175 CIFAAQKFGIPISVFSIFGNSKFLLQCCDATGG 207 (296)
T ss_pred heeehhhcCCceEEEEecCccHHHHHHhhccCC
Confidence 333 3579999999998876665555555543
No 358
>PRK12495 hypothetical protein; Provisional
Probab=34.41 E-value=82 Score=29.42 Aligned_cols=12 Identities=42% Similarity=0.930 Sum_probs=10.2
Q ss_pred CCCCCCCCccce
Q 048504 226 GFVCGSCGDVRF 237 (277)
Q Consensus 226 ~~~C~~CGg~rf 237 (277)
...|..||..-|
T Consensus 42 a~hC~~CG~PIp 53 (226)
T PRK12495 42 NAHCDECGDPIF 53 (226)
T ss_pred hhhcccccCccc
Confidence 479999998877
No 359
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=34.26 E-value=17 Score=34.03 Aligned_cols=21 Identities=52% Similarity=1.209 Sum_probs=0.0
Q ss_pred CCcceeCCCCCc--------CceeeCCCC
Q 048504 254 DGVPKRCLECNE--------NGLIRCPDC 274 (277)
Q Consensus 254 ~~~~~rC~~CNE--------nGLvrCp~C 274 (277)
.+..++|..||| |.|-|||.|
T Consensus 167 ~gcRV~CgHC~~tFLfnt~tnaLArCPHC 195 (275)
T KOG4684|consen 167 TGCRVKCGHCNETFLFNTLTNALARCPHC 195 (275)
T ss_pred cceEEEecCccceeehhhHHHHHhcCCcc
No 360
>PLN02189 cellulose synthase
Probab=33.92 E-value=26 Score=39.07 Aligned_cols=38 Identities=34% Similarity=0.932 Sum_probs=25.7
Q ss_pred CCCCCCCCcc--------ceEeCCCCCCc-cee---eeCCCCcceeCCCCC
Q 048504 226 GFVCGSCGDV--------RFVPCGNCSGS-RKV---FDEADGVPKRCLECN 264 (277)
Q Consensus 226 ~~~C~~CGg~--------rfVpC~~C~GS-~Kv---~~~~~~~~~rC~~CN 264 (277)
+..|.-|||. -||.|..|+-. ||. +.++++ ...||.|+
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg-~q~CpqCk 83 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREG-TQNCPQCK 83 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcC-CccCcccC
Confidence 4699999976 89999999754 443 333333 56666665
No 361
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=33.72 E-value=34 Score=24.16 Aligned_cols=30 Identities=27% Similarity=0.612 Sum_probs=17.3
Q ss_pred EeCCCCCCcceeee----CCC-CcceeCCCCCcCc
Q 048504 238 VPCGNCSGSRKVFD----EAD-GVPKRCLECNENG 267 (277)
Q Consensus 238 VpC~~C~GS~Kv~~----~~~-~~~~rC~~CNEnG 267 (277)
.|||.|+|--+.+. ..+ .....|..|.--|
T Consensus 2 kPCPfCGg~~~~~~~~~~~~~~~~~~~C~~Cga~~ 36 (53)
T TIGR03655 2 KPCPFCGGADVYLRRGFDPLDLSHYFECSTCGASG 36 (53)
T ss_pred CCCCCCCCcceeeEeccCCCCCEEEEECCCCCCCc
Confidence 47899988766443 111 1133787776554
No 362
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=33.45 E-value=38 Score=23.26 Aligned_cols=29 Identities=28% Similarity=0.747 Sum_probs=14.8
Q ss_pred ceEeCCCCCCcce--eeeCC-CCcceeCCCCC
Q 048504 236 RFVPCGNCSGSRK--VFDEA-DGVPKRCLECN 264 (277)
Q Consensus 236 rfVpC~~C~GS~K--v~~~~-~~~~~rC~~CN 264 (277)
+-.|||.|.|+-+ +|.++ ....--|..|.
T Consensus 2 ~h~pCP~CGG~DrFri~~d~~~~G~~~C~~C~ 33 (40)
T PF08273_consen 2 KHGPCPICGGKDRFRIFDDKDGRGTWICRQCG 33 (40)
T ss_dssp EEE--TTTT-TTTEEEETT----S-EEETTTT
T ss_pred CCCCCCCCcCccccccCcCcccCCCEECCCCC
Confidence 4579999999844 46653 22356677773
No 363
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.31 E-value=31 Score=35.10 Aligned_cols=35 Identities=23% Similarity=0.661 Sum_probs=19.3
Q ss_pred CCCCCCCC-------ccceEeCCCCCCcceeeeCCCCcceeCCCCCcCc
Q 048504 226 GFVCGSCG-------DVRFVPCGNCSGSRKVFDEADGVPKRCLECNENG 267 (277)
Q Consensus 226 ~~~C~~CG-------g~rfVpC~~C~GS~Kv~~~~~~~~~rC~~CNEnG 267 (277)
...|..|+ ..+.+.|..|+-... ...+||.|...-
T Consensus 222 ~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~-------~~~~Cp~C~s~~ 263 (505)
T TIGR00595 222 ILCCPNCDVSLTYHKKEGKLRCHYCGYQEP-------IPKTCPQCGSED 263 (505)
T ss_pred ccCCCCCCCceEEecCCCeEEcCCCcCcCC-------CCCCCCCCCCCe
Confidence 35677775 234456777764421 234677776543
No 364
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=32.93 E-value=33 Score=32.55 Aligned_cols=36 Identities=22% Similarity=0.418 Sum_probs=25.9
Q ss_pred CccceEeCCCCCCcceeeeCCCCcceeCCCCCcCce
Q 048504 233 GDVRFVPCGNCSGSRKVFDEADGVPKRCLECNENGL 268 (277)
Q Consensus 233 Gg~rfVpC~~C~GS~Kv~~~~~~~~~rC~~CNEnGL 268 (277)
++...|.|..|+-.=-+-.....-+++|+.|||---
T Consensus 61 ~~~p~v~CrVCq~~I~i~gk~~QhVVkC~~CnEATP 96 (256)
T PF09788_consen 61 GGAPVVTCRVCQSLIDIEGKMHQHVVKCSVCNEATP 96 (256)
T ss_pred CCCceEEeecCCceecccCccceeeEECCCCCcccc
Confidence 577889999998765544433445899999999643
No 365
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=32.68 E-value=2.6e+02 Score=24.47 Aligned_cols=89 Identities=19% Similarity=0.149 Sum_probs=49.6
Q ss_pred cccCCC-CCCcEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEe
Q 048504 121 SIRLPG-TEDRIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVG 199 (277)
Q Consensus 121 ~i~~~~-~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IG 199 (277)
.+..++ ...+|++..|..- . ...+....++.|+.+|+...++.+..+. .-+++.+.+ ...-.|||.| |
T Consensus 21 ~~~~~~~~~~~i~~iptA~~-~--~~~~~~~~~~~~~~lG~~~~~~~~~~~~-~~~~~~~~l----~~ad~I~~~G---G 89 (210)
T cd03129 21 FLARAGGAGARVLFIPTASG-D--RDEYGEEYRAAFERLGVEVVHLLLIDTA-NDPDVVARL----LEADGIFVGG---G 89 (210)
T ss_pred HHHHcCCCCCeEEEEeCCCC-C--hHHHHHHHHHHHHHcCCceEEEeccCCC-CCHHHHHHH----hhCCEEEEcC---C
Confidence 344444 3455555555542 1 3357789999999999998877765321 112333333 2344565555 3
Q ss_pred chhHH-HHHHhhccHHHHhcCC
Q 048504 200 NADVL-KSMYETGELARVLDGF 220 (277)
Q Consensus 200 G~del-~~L~EsGeL~klL~~~ 220 (277)
....+ ..|.+.+-++.+++.+
T Consensus 90 ~~~~~~~~l~~t~~~~~i~~~~ 111 (210)
T cd03129 90 NQLRLLSVLRETPLLDAILKRV 111 (210)
T ss_pred cHHHHHHHHHhCChHHHHHHHH
Confidence 33333 3356666666666554
No 366
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=32.44 E-value=1.4e+02 Score=21.95 Aligned_cols=34 Identities=12% Similarity=0.036 Sum_probs=19.3
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHh--------CCCeEEEEECCCC
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRG--------FRVWVDERDVSMD 170 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~--------~gV~y~ErDVs~d 170 (277)
++.|.+++ |+.|.+....|.. .+|.+.-+.++.+
T Consensus 5 ll~fwa~~------c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~ 46 (95)
T PF13905_consen 5 LLYFWASW------CPPCKKELPKLKELYKKYKKKDDVEFVFVSLDED 46 (95)
T ss_dssp EEEEE-TT------SHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSS
T ss_pred EEEEECCC------CHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCC
Confidence 45555665 5789876666653 2455666666554
No 367
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=32.36 E-value=28 Score=32.60 Aligned_cols=35 Identities=26% Similarity=0.692 Sum_probs=17.4
Q ss_pred CCCCCCCC--------------ccceEeCCCCCCcceeeeCCCCcceeCCCCCcC
Q 048504 226 GFVCGSCG--------------DVRFVPCGNCSGSRKVFDEADGVPKRCLECNEN 266 (277)
Q Consensus 226 ~~~C~~CG--------------g~rfVpC~~C~GS~Kv~~~~~~~~~rC~~CNEn 266 (277)
...|..|| |.||.-|+-|+..-+. ...+|+.|.+.
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~------~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRF------VRIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE--------TTS-TTT---
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeee------cCCCCcCCCCC
Confidence 36899997 4588888888876432 24567777654
No 368
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=31.56 E-value=26 Score=33.18 Aligned_cols=10 Identities=60% Similarity=1.311 Sum_probs=7.2
Q ss_pred CceeeCCCCC
Q 048504 266 NGLIRCPDCC 275 (277)
Q Consensus 266 nGLvrCp~C~ 275 (277)
|+|.|||.|.
T Consensus 175 ~tlARCPHCr 184 (256)
T PF09788_consen 175 NTLARCPHCR 184 (256)
T ss_pred CccccCCCCc
Confidence 5777888774
No 369
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=31.13 E-value=64 Score=26.57 Aligned_cols=51 Identities=12% Similarity=0.140 Sum_probs=33.0
Q ss_pred CChhH-HHHHHHHHhCCCeEEEEECCC--CHHHHHHHHHHhCCCCCCCcEEEeCCEEEe
Q 048504 144 TFEDC-YAVRMIFRGFRVWVDERDVSM--DSAYKKELQCVFGGKNVTLPQVFIRGKHVG 199 (277)
Q Consensus 144 Tc~~C-~~Vk~iL~~~gV~y~ErDVs~--d~~~reELke~lG~~~~tvPqVFI~G~~IG 199 (277)
+|..| .+++++|.+.||+...+-+.. +.+.. -..++++. + -.|-.||+|.|
T Consensus 20 qC~~cA~Al~~~L~~~gI~Gk~i~l~T~~~~~~~-I~sd~~~~---~-~sIt~NG~H~g 73 (100)
T PF15643_consen 20 QCVECASALKQFLKQAGIPGKIIRLYTGYHEGPF-IYSDRLGP---Q-ESITTNGRHYG 73 (100)
T ss_pred ehHHHHHHHHHHHHHCCCCceEEEEEecCCCCce-ehhhhhcC---C-cceeeCCEEEE
Confidence 47788 488999999999977766654 22211 34455532 1 45667888765
No 370
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=30.49 E-value=1.2e+02 Score=26.03 Aligned_cols=84 Identities=24% Similarity=0.419 Sum_probs=48.2
Q ss_pred CcEEEEEecCCCCCCCChhHH--------HHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEeCCEEEec
Q 048504 129 DRIVVYLTSLRGIRRTFEDCY--------AVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGN 200 (277)
Q Consensus 129 ~kVVLYttSlcgiR~Tc~~C~--------~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI~G~~IGG 200 (277)
+++.+|+ .+..||.|. +|+.+|+.+.-+ .+-..++.+.+|-.
T Consensus 10 gklF~~~-----~~~iCp~C~~~~e~~f~kV~~yLr~~p~~---------~ati~eV~e~tgVs---------------- 59 (137)
T TIGR03826 10 GRLFVKT-----GRDVCPSCYEEEEREFEKVYKFLRKHENR---------QATVSEIVEETGVS---------------- 59 (137)
T ss_pred chhhhhc-----CCccCHHHhHHHHHHHHHHHHHHHHCCCC---------CCCHHHHHHHHCcC----------------
Confidence 3455562 246799997 577777754210 02335666667641
Q ss_pred hhHHHHHHhhccHHHHhcCCCCCCCCCCCCCCCccce--EeCCCCCCc
Q 048504 201 ADVLKSMYETGELARVLDGFPRRQPGFVCGSCGDVRF--VPCGNCSGS 246 (277)
Q Consensus 201 ~del~~L~EsGeL~klL~~~~~~~~~~~C~~CGg~rf--VpC~~C~GS 246 (277)
.+.|..+...|.|.- ... ...+..|+.||-.-- -.|+.|...
T Consensus 60 ~~~I~~~IreGRL~~--~~~--~nl~~~CE~CG~~I~~Gr~C~~C~~~ 103 (137)
T TIGR03826 60 EKLILKFIREGRLQL--KHF--PNLGYPCERCGTSIREGRLCDSCAGE 103 (137)
T ss_pred HHHHHHHHHcCCeec--cCC--CCCcCcccccCCcCCCCCccHHHHHH
Confidence 356677777777542 222 244589999995311 347777554
No 371
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=30.22 E-value=31 Score=25.92 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=12.3
Q ss_pred eeeeCCCCcceeCCCCC
Q 048504 248 KVFDEADGVPKRCLECN 264 (277)
Q Consensus 248 Kv~~~~~~~~~rC~~CN 264 (277)
|+-+.++..++|||-|.
T Consensus 8 Kv~~RDGE~~lrCPRC~ 24 (65)
T COG4049 8 KVRDRDGEEFLRCPRCG 24 (65)
T ss_pred EeeccCCceeeeCCchh
Confidence 45556667789998886
No 372
>COG4332 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.63 E-value=34 Score=31.18 Aligned_cols=50 Identities=28% Similarity=0.444 Sum_probs=32.0
Q ss_pred CCCCCCCCCCCccceEeCCCCCCcceeeeCCC--C--cceeCCCCCcCce----eeCCCCC
Q 048504 223 RQPGFVCGSCGDVRFVPCGNCSGSRKVFDEAD--G--VPKRCLECNENGL----IRCPDCC 275 (277)
Q Consensus 223 ~~~~~~C~~CGg~rfVpC~~C~GS~Kv~~~~~--~--~~~rC~~CNEnGL----vrCp~C~ 275 (277)
..+...|.+||+.+-- .|+|..++-.... + ..-||..||-.=- -||+.|.
T Consensus 14 pq~~k~C~~Cg~kr~f---~cSg~fRvNAq~K~LDvWlIYkC~~Cd~tWN~~IfeR~~~~~ 71 (203)
T COG4332 14 PQPAKRCNSCGVKRAF---TCSGKFRVNAQGKVLDVWLIYKCTHCDYTWNISIFERLNVSD 71 (203)
T ss_pred ChhhhhCcccCCccee---eecCcEEEcCCCcEEEEEEEEEeeccCCccchhhhhccCccc
Confidence 3445789999998865 4678777754321 1 2569999986432 3555553
No 373
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=29.50 E-value=1.3e+02 Score=25.43 Aligned_cols=58 Identities=14% Similarity=0.031 Sum_probs=32.1
Q ss_pred HHHHHHHHhCCCeEEEEEC-CCCHHHHHHHHHHh----CCCCCCCcEEEeCCEE-EechhHHHH
Q 048504 149 YAVRMIFRGFRVWVDERDV-SMDSAYKKELQCVF----GGKNVTLPQVFIRGKH-VGNADVLKS 206 (277)
Q Consensus 149 ~~Vk~iL~~~gV~y~ErDV-s~d~~~reELke~l----G~~~~tvPqVFI~G~~-IGG~del~~ 206 (277)
..+..++...|+..++.+- ..+.++++++.+.. ..+...+|.++|||++ |.|+.....
T Consensus 132 ~~l~~~a~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~G~Pt~vv~g~~~~~G~~~~~~ 195 (201)
T cd03024 132 DVLVDLAEEAGLDAAEARAVLASDEYADEVRADEARARQLGISGVPFFVFNGKYAVSGAQPPEV 195 (201)
T ss_pred HHHHHHHHHcCCCHHHHHHHhcCcccchHHHHHHHHHHHCCCCcCCEEEECCeEeecCCCCHHH
Confidence 4577788888887542211 11222333332221 1123789999999885 577765443
No 374
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=29.47 E-value=89 Score=29.68 Aligned_cols=28 Identities=32% Similarity=0.655 Sum_probs=18.9
Q ss_pred HHHHHHhCCCCCCCcEEEeCCE-EEechh
Q 048504 175 KELQCVFGGKNVTLPQVFIRGK-HVGNAD 202 (277)
Q Consensus 175 eELke~lG~~~~tvPqVFI~G~-~IGG~d 202 (277)
..+...+|.+.+-.||+||+|+ ++-|++
T Consensus 101 ~aY~~a~g~~~vyTPQavvnGr~~~~Gad 129 (261)
T COG5429 101 RAYARAFGARGVYTPQAVVNGRVHANGAD 129 (261)
T ss_pred HHHHHhhccCCCCCchheeechhhhcCCC
Confidence 3444556665678899999997 455543
No 375
>PLN02436 cellulose synthase A
Probab=29.46 E-value=37 Score=38.06 Aligned_cols=38 Identities=32% Similarity=0.901 Sum_probs=25.8
Q ss_pred CCCCCCCCcc--------ceEeCCCCCCc-cee---eeCCCCcceeCCCCC
Q 048504 226 GFVCGSCGDV--------RFVPCGNCSGS-RKV---FDEADGVPKRCLECN 264 (277)
Q Consensus 226 ~~~C~~CGg~--------rfVpC~~C~GS-~Kv---~~~~~~~~~rC~~CN 264 (277)
+..|.-|||. -||.|-.|+-. ||. +.++++ ...||.|+
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg-~~~Cpqck 85 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREG-NQACPQCK 85 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcC-CccCcccC
Confidence 5799999976 79999999765 443 333332 56666665
No 376
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=29.29 E-value=2.9e+02 Score=25.32 Aligned_cols=77 Identities=19% Similarity=0.297 Sum_probs=49.3
Q ss_pred CCcEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHH------------H-------HHHHHHHhCCCCCCC
Q 048504 128 EDRIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSA------------Y-------KKELQCVFGGKNVTL 188 (277)
Q Consensus 128 ~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~------------~-------reELke~lG~~~~tv 188 (277)
..+|+||..-.. -=.+..++|+..+..+-.+|++.+++ + .++.-+.++. ..+
T Consensus 3 agrVivYGGkGA-------LGSacv~~FkannywV~siDl~eNe~Ad~sI~V~~~~swtEQe~~v~~~vg~sL~g--ekv 73 (236)
T KOG4022|consen 3 AGRVIVYGGKGA-------LGSACVEFFKANNYWVLSIDLSENEQADSSILVDGNKSWTEQEQSVLEQVGSSLQG--EKV 73 (236)
T ss_pred CceEEEEcCcch-------HhHHHHHHHHhcCeEEEEEeecccccccceEEecCCcchhHHHHHHHHHHHHhhcc--ccc
Confidence 468999986532 33455678899998888888865422 1 1222223333 345
Q ss_pred cEE-EeCCEEEechhHHHHHHhhccH
Q 048504 189 PQV-FIRGKHVGNADVLKSMYETGEL 213 (277)
Q Consensus 189 PqV-FI~G~~IGG~del~~L~EsGeL 213 (277)
-.| .|.|-+-||.-.-+.|.++-+|
T Consensus 74 Dav~CVAGGWAGGnAksKdl~KNaDL 99 (236)
T KOG4022|consen 74 DAVFCVAGGWAGGNAKSKDLVKNADL 99 (236)
T ss_pred ceEEEeeccccCCCcchhhhhhchhh
Confidence 444 5899999998776777666665
No 377
>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed
Probab=29.28 E-value=60 Score=24.28 Aligned_cols=27 Identities=37% Similarity=0.842 Sum_probs=20.9
Q ss_pred EeCCCCCCcceeeeCCCCcceeCCCCCc
Q 048504 238 VPCGNCSGSRKVFDEADGVPKRCLECNE 265 (277)
Q Consensus 238 VpC~~C~GS~Kv~~~~~~~~~rC~~CNE 265 (277)
|-|+.|..-.=+|+.... .++|..|..
T Consensus 12 VkCp~C~n~q~vFsha~t-~V~C~~Cg~ 38 (59)
T PRK00415 12 VKCPDCGNEQVVFSHAST-VVRCLVCGK 38 (59)
T ss_pred EECCCCCCeEEEEecCCc-EEECcccCC
Confidence 569999888888886544 788888864
No 378
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=29.12 E-value=1.8e+02 Score=24.87 Aligned_cols=39 Identities=3% Similarity=0.111 Sum_probs=24.2
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHHh--------------CCCeEEEEECCCCHH
Q 048504 129 DRIVVYLTSLRGIRRTFEDCYAVRMIFRG--------------FRVWVDERDVSMDSA 172 (277)
Q Consensus 129 ~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~--------------~gV~y~ErDVs~d~~ 172 (277)
..|+||+-.. .|+.|++..-.|.. .++.+..++++.+.+
T Consensus 26 k~vlL~FwAs-----WCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~ 78 (146)
T cd03008 26 RVLLLFFGAV-----VSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQ 78 (146)
T ss_pred CEEEEEEECC-----CChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHH
Confidence 4466655542 36899987776654 146667777666544
No 379
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=29.09 E-value=1.2e+02 Score=32.24 Aligned_cols=79 Identities=11% Similarity=0.158 Sum_probs=51.2
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECC----CCHHHHHHHHHHhCCCCCCCcEEEeCCEEEechhH-
Q 048504 129 DRIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVS----MDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADV- 203 (277)
Q Consensus 129 ~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs----~d~~~reELke~lG~~~~tvPqVFI~G~~IGG~de- 203 (277)
.+|+|.+++.. ...|.+|.+.|+..||..+.+|+. .|.+. +..+... .-..|.+.+..+||+-.
T Consensus 545 ~dvtIva~G~~-----v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~---i~sl~k~---~~~vVt~Ee~~~GG~Gs~ 613 (641)
T PLN02234 545 ERVALLGYGSA-----VQRCLEAASMLSERGLKITVADARFCKPLDVAL---IRSLAKS---HEVLITVEEGSIGGFGSH 613 (641)
T ss_pred CCEEEEEecHH-----HHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHH---HHHHHHh---CCEEEEECCCCCCcHHHH
Confidence 46888887753 478999999999999999999997 34443 3333321 11245566667798844
Q ss_pred HH-HHHhhccHHHHhc
Q 048504 204 LK-SMYETGELARVLD 218 (277)
Q Consensus 204 l~-~L~EsGeL~klL~ 218 (277)
|. .|.+.|-+++.+.
T Consensus 614 Va~~l~e~~~~~~~~~ 629 (641)
T PLN02234 614 VVQFLALDGLLDGKLK 629 (641)
T ss_pred HHHHHHHcCCCCCCce
Confidence 33 3566666555543
No 380
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=28.81 E-value=61 Score=21.74 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=16.8
Q ss_pred EeCCCCCCcceeeeCCCCcceeCCC
Q 048504 238 VPCGNCSGSRKVFDEADGVPKRCLE 262 (277)
Q Consensus 238 VpC~~C~GS~Kv~~~~~~~~~rC~~ 262 (277)
+.|++|++....-....+.|+-|+.
T Consensus 2 ~~CP~Cg~~lv~r~~k~g~F~~Cs~ 26 (39)
T PF01396_consen 2 EKCPKCGGPLVLRRGKKGKFLGCSN 26 (39)
T ss_pred cCCCCCCceeEEEECCCCCEEECCC
Confidence 4688898666555545556887764
No 381
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=28.20 E-value=52 Score=37.67 Aligned_cols=38 Identities=24% Similarity=0.624 Sum_probs=26.2
Q ss_pred CCCCCCCCccc--eEeCCCCCCcceeeeCCCCcceeCCCCCcC
Q 048504 226 GFVCGSCGDVR--FVPCGNCSGSRKVFDEADGVPKRCLECNEN 266 (277)
Q Consensus 226 ~~~C~~CGg~r--fVpC~~C~GS~Kv~~~~~~~~~rC~~CNEn 266 (277)
..-|..||..- -..|+.|+.. +..++.+ ..+||.|+-.
T Consensus 679 ~~fCP~CGs~te~vy~CPsCGae--v~~des~-a~~CP~CGtp 718 (1337)
T PRK14714 679 ENRCPDCGTHTEPVYVCPDCGAE--VPPDESG-RVECPRCDVE 718 (1337)
T ss_pred cccCcccCCcCCCceeCccCCCc--cCCCccc-cccCCCCCCc
Confidence 45899999874 3369999884 2223334 7899999854
No 382
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=27.99 E-value=45 Score=22.30 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=13.3
Q ss_pred CCCCCCcceeeeCCCCcceeCCCCC
Q 048504 240 CGNCSGSRKVFDEADGVPKRCLECN 264 (277)
Q Consensus 240 C~~C~GS~Kv~~~~~~~~~rC~~CN 264 (277)
||.|+.......-.+...-.|+.|.
T Consensus 2 CP~C~~~l~~~~~~~~~id~C~~C~ 26 (41)
T PF13453_consen 2 CPRCGTELEPVRLGDVEIDVCPSCG 26 (41)
T ss_pred cCCCCcccceEEECCEEEEECCCCC
Confidence 6777665444332333455666663
No 383
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=27.95 E-value=33 Score=38.45 Aligned_cols=38 Identities=37% Similarity=0.921 Sum_probs=26.3
Q ss_pred CCCCCCCCcc--------ceEeCCCCCCc-cee---eeCCCCcceeCCCCC
Q 048504 226 GFVCGSCGDV--------RFVPCGNCSGS-RKV---FDEADGVPKRCLECN 264 (277)
Q Consensus 226 ~~~C~~CGg~--------rfVpC~~C~GS-~Kv---~~~~~~~~~rC~~CN 264 (277)
+..|.-|||. -||.|-+|.-. ||- |.+++| -.-||.|+
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG-~q~CPqCk 66 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDG-NQSCPQCK 66 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcC-CccCCccC
Confidence 4699999976 89999999765 443 333333 56666665
No 384
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=27.01 E-value=30 Score=34.96 Aligned_cols=137 Identities=15% Similarity=0.127 Sum_probs=74.0
Q ss_pred ccccCCCCCCcEEEEEecCCCCCCCChh-HHHHHHHHHhCCCeEEEEECCCC---HHHHH--HHHHHhCC-------CCC
Q 048504 120 SSIRLPGTEDRIVVYLTSLRGIRRTFED-CYAVRMIFRGFRVWVDERDVSMD---SAYKK--ELQCVFGG-------KNV 186 (277)
Q Consensus 120 ~~i~~~~~~~kVVLYttSlcgiR~Tc~~-C~~Vk~iL~~~gV~y~ErDVs~d---~~~re--ELke~lG~-------~~~ 186 (277)
..+.+|-+.++|.+=.. -.++. =.++.+++....+.+..++.+.. ..+.. +|.++... ...
T Consensus 203 ~~~i~P~t~~PVl~GIR------g~~p~~l~~a~~~i~~e~~e~~~if~TNqatD~hl~~~~~l~d~~~~~~~~v~g~v~ 276 (421)
T COG1571 203 YPLIPPHTPNPVLYGIR------GAVPEVLLKAMSLIKRELVERSAIFETNQATDDHLVDKGKLNDIEDYSKYRVVGRVE 276 (421)
T ss_pred ccccCCCCCCCEEEEEe------cCCHHHHHHHHHHHhccCcceEEEEeccchhhhhccccchhhhhhhccceEEEEEEe
Confidence 45566777777765333 33443 45677777777777777777542 22222 24444311 124
Q ss_pred CCcEEEeCCEEEechhH------HHHHHhhccHHHHhcCCCCCCCCCCCCCCCcc-------------ceE----eCCCC
Q 048504 187 TLPQVFIRGKHVGNADV------LKSMYETGELARVLDGFPRRQPGFVCGSCGDV-------------RFV----PCGNC 243 (277)
Q Consensus 187 tvPqVFI~G~~IGG~de------l~~L~EsGeL~klL~~~~~~~~~~~C~~CGg~-------------rfV----pC~~C 243 (277)
.-|+..-+|+.|.-..+ ..+.....++..++..+...+.-.++++=... +|+ .|+.|
T Consensus 277 ~~p~~ieGghv~v~i~d~~G~I~~~A~eptk~fr~~a~~L~pGD~i~~~G~~~~~~~n~ek~~v~~l~~~~~~~p~Cp~C 356 (421)
T COG1571 277 AEPRAIEGGHVVVEITDGEGEIGAVAFEPTKEFRELARKLIPGDEITVYGSVKPGTLNLEKFQVLKLARYERVNPVCPRC 356 (421)
T ss_pred cccEEeeCCEEEEEecCCCceEEEEEecccccchHHHHhcCCCCEEEEecCccccceeEEEEEEEEeeeeEEcCCCCCcc
Confidence 67888888876643311 22233445555555544433322222222111 122 39999
Q ss_pred CCcceeeeCCCCcceeCCCCCc
Q 048504 244 SGSRKVFDEADGVPKRCLECNE 265 (277)
Q Consensus 244 ~GS~Kv~~~~~~~~~rC~~CNE 265 (277)
+|+.|+-... -.||+.|-.
T Consensus 357 g~~m~S~G~~---g~rC~kCg~ 375 (421)
T COG1571 357 GGRMKSAGRN---GFRCKKCGT 375 (421)
T ss_pred CCchhhcCCC---Ccccccccc
Confidence 9999998754 368888853
No 385
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=26.79 E-value=2.5e+02 Score=20.25 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=21.4
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHH----HhC---CCeEEEEECCCC
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIF----RGF---RVWVDERDVSMD 170 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL----~~~---gV~y~ErDVs~d 170 (277)
-|+.|..++ |+.|.+....| +.+ ++.+.-++++.+
T Consensus 22 ~ll~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~ 63 (116)
T cd02966 22 VLVNFWASW------CPPCRAEMPELEALAKEYKDDGVEVVGVNVDDD 63 (116)
T ss_pred EEEEeeccc------ChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCC
Confidence 355555555 56898544444 333 577778888765
No 386
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=26.45 E-value=56 Score=22.11 Aligned_cols=30 Identities=37% Similarity=0.737 Sum_probs=18.3
Q ss_pred ceEeCCCCCCcce-eeeCC-CCcceeCCCCCc
Q 048504 236 RFVPCGNCSGSRK-VFDEA-DGVPKRCLECNE 265 (277)
Q Consensus 236 rfVpC~~C~GS~K-v~~~~-~~~~~rC~~CNE 265 (277)
+-+|||.|.|+-+ .|.+. ..+.--|..|+.
T Consensus 2 ~~~pCP~CGG~DrFr~~d~~g~G~~~C~~Cg~ 33 (37)
T smart00778 2 RHGPCPNCGGSDRFRFDDKDGRGTWFCSVCGA 33 (37)
T ss_pred CccCCCCCCCccccccccCCCCcCEEeCCCCC
Confidence 3579999999733 35543 223556666654
No 387
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=26.30 E-value=3.3e+02 Score=21.68 Aligned_cols=43 Identities=16% Similarity=0.144 Sum_probs=28.1
Q ss_pred EEEEEec-CCCCCCCChhHHHHH----HH---HHhCCCeEEEEECCCCHHHHHHHHH
Q 048504 131 IVVYLTS-LRGIRRTFEDCYAVR----MI---FRGFRVWVDERDVSMDSAYKKELQC 179 (277)
Q Consensus 131 VVLYttS-lcgiR~Tc~~C~~Vk----~i---L~~~gV~y~ErDVs~d~~~reELke 179 (277)
||.|..+ + |+.|.... ++ +...+|.+..+....++..++.+.+
T Consensus 32 vv~f~~~~~------Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~ 82 (146)
T PF08534_consen 32 VVNFWASAW------CPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKK 82 (146)
T ss_dssp EEEEESTTT------SHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHH
T ss_pred EEEEEccCC------CCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHh
Confidence 5555555 5 58998443 33 3456799999988888775554444
No 388
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated
Probab=26.29 E-value=83 Score=34.37 Aligned_cols=9 Identities=22% Similarity=0.663 Sum_probs=6.2
Q ss_pred CCCCCCCCc
Q 048504 226 GFVCGSCGD 234 (277)
Q Consensus 226 ~~~C~~CGg 234 (277)
...|..||+
T Consensus 592 ~~~CP~Cg~ 600 (860)
T PRK06319 592 EIDCPKCHK 600 (860)
T ss_pred CcccCCCCC
Confidence 357888864
No 389
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=26.24 E-value=51 Score=27.06 Aligned_cols=22 Identities=23% Similarity=0.685 Sum_probs=15.5
Q ss_pred CCCCCCCCcc-----ceEeCCCCCCcc
Q 048504 226 GFVCGSCGDV-----RFVPCGNCSGSR 247 (277)
Q Consensus 226 ~~~C~~CGg~-----rfVpC~~C~GS~ 247 (277)
...|..||-. .+..||.|++..
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~~ 96 (115)
T TIGR00100 70 ECECEDCSEEVSPEIDLYRCPKCHGIM 96 (115)
T ss_pred EEEcccCCCEEecCCcCccCcCCcCCC
Confidence 4688888732 355699998765
No 390
>PTZ00102 disulphide isomerase; Provisional
Probab=26.24 E-value=1.1e+02 Score=29.76 Aligned_cols=51 Identities=8% Similarity=0.211 Sum_probs=31.6
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhC--------CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEE
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGF--------RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVF 192 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~--------gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVF 192 (277)
-+|.|..+|| +.|+.....|+.. .|.+..+|.+.+.. +.+..+ ...+|.++
T Consensus 378 vlv~f~a~wC------~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~----~~~~~~--v~~~Pt~~ 436 (477)
T PTZ00102 378 VLLEIYAPWC------GHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANET----PLEEFS--WSAFPTIL 436 (477)
T ss_pred EEEEEECCCC------HHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCcc----chhcCC--CcccCeEE
Confidence 3555666665 6999888777642 25566788776543 222333 36789884
No 391
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=26.21 E-value=73 Score=26.49 Aligned_cols=40 Identities=25% Similarity=0.630 Sum_probs=21.2
Q ss_pred CCCCCCCCcc---------ceEeCC---CCCCcceeeeCCCCcceeCCCCCc
Q 048504 226 GFVCGSCGDV---------RFVPCG---NCSGSRKVFDEADGVPKRCLECNE 265 (277)
Q Consensus 226 ~~~C~~CGg~---------rfVpC~---~C~GS~Kv~~~~~~~~~rC~~CNE 265 (277)
...|..||+. +|+-|. .|.+..---.........|+.|+.
T Consensus 17 ~~~Cp~Cg~~m~~~~~~~g~f~gCs~yP~C~~~~~~~~~~~~~~~~Cp~C~~ 68 (140)
T COG0551 17 GQICPKCGKNMVKKFGKYGIFLGCSNYPKCDYYEPEKAIAEKTGVKCPKCGK 68 (140)
T ss_pred CccCCcCCCeeEEEEccCCeEEEeCCCCCCCCCcccccccccCceeCCCCCC
Confidence 4678888732 777774 566511000001123578888874
No 392
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=26.17 E-value=3.3e+02 Score=21.45 Aligned_cols=44 Identities=7% Similarity=-0.076 Sum_probs=23.0
Q ss_pred ChhHHHHHHH-------HHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEE
Q 048504 145 FEDCYAVRMI-------FRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVF 192 (277)
Q Consensus 145 c~~C~~Vk~i-------L~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVF 192 (277)
|+.|.+-..- +...+|.+.-+..+...... .+.+..+ .++|.+.
T Consensus 36 Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~-~~~~~~~---~~~p~~~ 86 (149)
T cd02970 36 CPFCREYLRALSKLLPELDALGVELVAVGPESPEKLE-AFDKGKF---LPFPVYA 86 (149)
T ss_pred ChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHH-HHHHhcC---CCCeEEE
Confidence 5899853333 33457777777665433322 3333332 4677543
No 393
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=26.08 E-value=27 Score=26.60 Aligned_cols=30 Identities=30% Similarity=0.686 Sum_probs=14.5
Q ss_pred CCCCCCc-ceeeeC----CCCcceeCCCCCcCcee
Q 048504 240 CGNCSGS-RKVFDE----ADGVPKRCLECNENGLI 269 (277)
Q Consensus 240 C~~C~GS-~Kv~~~----~~~~~~rC~~CNEnGLv 269 (277)
|..|+.. .|.|+. .+.+.++||.|+..-||
T Consensus 7 C~~C~~Rs~~~~sk~aY~~GvViv~C~gC~~~HlI 41 (66)
T PF05180_consen 7 CNKCGTRSAKMFSKQAYHKGVVIVQCPGCKNRHLI 41 (66)
T ss_dssp ETTTTEEEEEEEEHHHHHTSEEEEE-TTS--EEES
T ss_pred cCCCCCccceeeCHHHHhCCeEEEECCCCcceeee
Confidence 5556543 333432 34567788888765443
No 394
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=25.82 E-value=30 Score=29.34 Aligned_cols=10 Identities=30% Similarity=0.866 Sum_probs=6.5
Q ss_pred cceEeCCCCC
Q 048504 235 VRFVPCGNCS 244 (277)
Q Consensus 235 ~rfVpC~~C~ 244 (277)
.-|..|+.|+
T Consensus 97 ~~~Y~Cp~C~ 106 (147)
T smart00531 97 NAYYKCPNCQ 106 (147)
T ss_pred CcEEECcCCC
Confidence 3466777775
No 395
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=25.32 E-value=40 Score=31.12 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=23.2
Q ss_pred CCCCCCccceEeCCCCCCcceeeeCC-CCcceeCCCCCcCceee
Q 048504 228 VCGSCGDVRFVPCGNCSGSRKVFDEA-DGVPKRCLECNENGLIR 270 (277)
Q Consensus 228 ~C~~CGg~rfVpC~~C~GS~Kv~~~~-~~~~~rC~~CNEnGLvr 270 (277)
+-+--|....+-|..|+..... .+. .....+|+.|...|++|
T Consensus 108 v~elHG~~~~~~C~~C~~~~~~-~~~~~~~~p~C~~Cg~~g~lr 150 (242)
T PTZ00408 108 VLHMHGELLKVRCTATGHVFDW-TEDVVHGSSRCKCCGCVGTLR 150 (242)
T ss_pred EEEecCccceEEECCCCcccCc-hhhhhcCCCccccCCCCCCCC
Confidence 4555567777778888643211 110 01135688887666654
No 396
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=25.28 E-value=70 Score=24.50 Aligned_cols=26 Identities=23% Similarity=0.611 Sum_probs=16.8
Q ss_pred CCCCCCccee--eeCCCCcceeCCCCCc
Q 048504 240 CGNCSGSRKV--FDEADGVPKRCLECNE 265 (277)
Q Consensus 240 C~~C~GS~Kv--~~~~~~~~~rC~~CNE 265 (277)
||.|+.--++ +.+++...+-|.+|.-
T Consensus 11 CP~C~~~D~i~~~~e~~ve~vECV~CGy 38 (71)
T PF09526_consen 11 CPKCQAMDTIMMWRENGVEYVECVECGY 38 (71)
T ss_pred CCCCcCccEEEEEEeCCceEEEecCCCC
Confidence 6666666555 4455555788888853
No 397
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=25.26 E-value=3e+02 Score=20.78 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=25.8
Q ss_pred EEEEEecCCCCCCCChhHHHHHHHHHhC------CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEE
Q 048504 131 IVVYLTSLRGIRRTFEDCYAVRMIFRGF------RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVF 192 (277)
Q Consensus 131 VVLYttSlcgiR~Tc~~C~~Vk~iL~~~------gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVF 192 (277)
|+.|..+| |+.|+.....|+.+ ++.+..+ .+.+.+...++.+..+- ..+|.++
T Consensus 25 vl~F~~~w------C~~C~~~~p~l~~~~~~~~~~~~vi~v-~~~~~~~~~~~~~~~~~--~~~p~~~ 83 (114)
T cd02967 25 LLFFLSPT------CPVCKKLLPVIRSIARAEADWLDVVLA-SDGEKAEHQRFLKKHGL--EAFPYVL 83 (114)
T ss_pred EEEEECCC------CcchHhHhHHHHHHHHHhcCCcEEEEE-eCCCHHHHHHHHHHhCC--CCCcEEe
Confidence 45555555 57998665555432 3444333 12333333444444432 3477653
No 398
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=25.19 E-value=74 Score=24.21 Aligned_cols=30 Identities=20% Similarity=0.532 Sum_probs=15.5
Q ss_pred EeCCCCCCcceeeeCCCC-cceeCCCCCcCc
Q 048504 238 VPCGNCSGSRKVFDEADG-VPKRCLECNENG 267 (277)
Q Consensus 238 VpC~~C~GS~Kv~~~~~~-~~~rC~~CNEnG 267 (277)
-|||.|..-.-.+....+ ....|..|..-|
T Consensus 7 KPCPFCG~~~~~v~~~~g~~~v~C~~CgA~~ 37 (64)
T PRK09710 7 KPCPFCGCPSVTVKAISGYYRAKCNGCESRT 37 (64)
T ss_pred cCCCCCCCceeEEEecCceEEEEcCCCCcCc
Confidence 366777665444433322 236666666543
No 399
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=25.13 E-value=67 Score=27.79 Aligned_cols=35 Identities=17% Similarity=0.389 Sum_probs=19.7
Q ss_pred ccceEeCCCCCCcceeeeCCCCcceeCCCCCcCceee
Q 048504 234 DVRFVPCGNCSGSRKVFDEADGVPKRCLECNENGLIR 270 (277)
Q Consensus 234 g~rfVpC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLvr 270 (277)
|.+...|.+|+-..-+.. .+....||.|+.+.-.|
T Consensus 109 g~G~l~C~~Cg~~~~~~~--~~~l~~Cp~C~~~~F~R 143 (146)
T PF07295_consen 109 GPGTLVCENCGHEVELTH--PERLPPCPKCGHTEFTR 143 (146)
T ss_pred cCceEecccCCCEEEecC--CCcCCCCCCCCCCeeee
Confidence 555666666665544433 23466677776655544
No 400
>PRK00420 hypothetical protein; Validated
Probab=25.01 E-value=44 Score=27.85 Aligned_cols=11 Identities=9% Similarity=-0.061 Sum_probs=8.0
Q ss_pred cceeCCCCCcC
Q 048504 256 VPKRCLECNEN 266 (277)
Q Consensus 256 ~~~rC~~CNEn 266 (277)
+...||.|.+.
T Consensus 39 g~~~Cp~Cg~~ 49 (112)
T PRK00420 39 GEVVCPVHGKV 49 (112)
T ss_pred CceECCCCCCe
Confidence 36788888773
No 401
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=24.85 E-value=34 Score=24.92 Aligned_cols=7 Identities=57% Similarity=1.625 Sum_probs=3.5
Q ss_pred eeeCCCC
Q 048504 268 LIRCPDC 274 (277)
Q Consensus 268 LvrCp~C 274 (277)
-|+||.|
T Consensus 24 eIKCpRC 30 (51)
T PF10122_consen 24 EIKCPRC 30 (51)
T ss_pred EEECCCC
Confidence 4455555
No 402
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=24.60 E-value=47 Score=27.07 Aligned_cols=9 Identities=22% Similarity=0.940 Sum_probs=5.8
Q ss_pred ceEeCCCCC
Q 048504 236 RFVPCGNCS 244 (277)
Q Consensus 236 rfVpC~~C~ 244 (277)
.++.|+.|+
T Consensus 20 t~f~CP~Cg 28 (99)
T PRK14892 20 KIFECPRCG 28 (99)
T ss_pred cEeECCCCC
Confidence 356677777
No 403
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=24.52 E-value=37 Score=25.43 Aligned_cols=19 Identities=32% Similarity=0.934 Sum_probs=14.2
Q ss_pred ceeCCCCCcCcee-eCCCCC
Q 048504 257 PKRCLECNENGLI-RCPDCC 275 (277)
Q Consensus 257 ~~rC~~CNEnGLv-rCp~C~ 275 (277)
.++|+.|.+=-|- .||.|-
T Consensus 5 ~rkC~~cg~YTLke~Cp~CG 24 (59)
T COG2260 5 IRKCPKCGRYTLKEKCPVCG 24 (59)
T ss_pred hhcCcCCCceeecccCCCCC
Confidence 4678888877777 788874
No 404
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=24.32 E-value=1.9e+02 Score=26.35 Aligned_cols=63 Identities=14% Similarity=0.088 Sum_probs=42.4
Q ss_pred ccccCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHHhC------CCeEEEEECCCCHHHHHHHHHHhCC
Q 048504 120 SSIRLPGTEDRIVVYLTSLRGIRRTFEDCYAVRMIFRGF------RVWVDERDVSMDSAYKKELQCVFGG 183 (277)
Q Consensus 120 ~~i~~~~~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~------gV~y~ErDVs~d~~~reELke~lG~ 183 (277)
..+......=.|.+|.+.--.- ..-+.=..++.+|+.+ +|.|+.+|...+++..++..+..|-
T Consensus 18 ~~L~~L~~pV~i~~~~s~~l~~-~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi 86 (271)
T PF09822_consen 18 KVLKSLDEPVTITVYFSRELPP-ELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGI 86 (271)
T ss_pred HHHHhCCCCEEEEEEECCCcch-hhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCC
Confidence 3444444555688888761000 0124667899999886 7999999998888877776666663
No 405
>PLN02400 cellulose synthase
Probab=24.20 E-value=54 Score=36.91 Aligned_cols=38 Identities=34% Similarity=0.924 Sum_probs=25.9
Q ss_pred CCCCCCCCcc--------ceEeCCCCCCc-cee---eeCCCCcceeCCCCC
Q 048504 226 GFVCGSCGDV--------RFVPCGNCSGS-RKV---FDEADGVPKRCLECN 264 (277)
Q Consensus 226 ~~~C~~CGg~--------rfVpC~~C~GS-~Kv---~~~~~~~~~rC~~CN 264 (277)
+..|.-|||. -||.|-+|.-. ||- |.++++ -.-||.|+
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeG-nq~CPQCk 85 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDG-TQCCPQCK 85 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccC-CccCcccC
Confidence 5799999976 89999999765 443 333333 45566664
No 406
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=23.93 E-value=1.4e+02 Score=28.54 Aligned_cols=50 Identities=14% Similarity=0.260 Sum_probs=32.4
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHh--------C-CCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEe
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRG--------F-RVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFI 193 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~--------~-gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI 193 (277)
-+|.|.++|| +.|......|+. . +|.+..+|++.+. +.. .+ ...+|.+++
T Consensus 367 vlv~f~a~wC------~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-----~~~-~~--i~~~Pt~~~ 425 (462)
T TIGR01130 367 VLVEFYAPWC------GHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-----VPP-FE--VEGFPTIKF 425 (462)
T ss_pred EEEEEECCCC------HhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-----cCC-CC--ccccCEEEE
Confidence 4566778876 589877666654 1 5778888887653 222 32 367898854
No 407
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=23.56 E-value=91 Score=37.08 Aligned_cols=52 Identities=23% Similarity=0.545 Sum_probs=32.2
Q ss_pred EEEechhHHHHHHhhccHHHHhcCCCCC-----CCCCCCCCCCccce---------EeCCCCCCcce
Q 048504 196 KHVGNADVLKSMYETGELARVLDGFPRR-----QPGFVCGSCGDVRF---------VPCGNCSGSRK 248 (277)
Q Consensus 196 ~~IGG~del~~L~EsGeL~klL~~~~~~-----~~~~~C~~CGg~rf---------VpC~~C~GS~K 248 (277)
.|+|=+|++.+|+-.=...+.. +++.. .+++.|+.|.|.+. ++|+.|+|.+-
T Consensus 686 tY~g~fd~IR~lFA~~~~ak~~-g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 686 TYIKAFDDLRELFAEQPRSKRL-GLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred eehhhhHHHHHHHhhChHHHHc-CCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 4556677888776443333322 22221 13568999988764 58999999754
No 408
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=23.46 E-value=3.6e+02 Score=21.15 Aligned_cols=43 Identities=12% Similarity=0.178 Sum_probs=22.1
Q ss_pred ChhHHH-------HHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE
Q 048504 145 FEDCYA-------VRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQV 191 (277)
Q Consensus 145 c~~C~~-------Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqV 191 (277)
|+.|.. ...-|...++.+.-+.++....++ ++.+..+ ..+|.+
T Consensus 36 cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~-~~~~~~~---~~~~~l 85 (140)
T cd03017 36 TPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHA-KFAEKYG---LPFPLL 85 (140)
T ss_pred CCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHH-HHHHHhC---CCceEE
Confidence 567763 333345567877777665433333 3333333 456633
No 409
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=23.26 E-value=3e+02 Score=22.37 Aligned_cols=54 Identities=11% Similarity=0.014 Sum_probs=27.6
Q ss_pred CcEEEEEe-cCCCCCCCChhHHH-------HHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE
Q 048504 129 DRIVVYLT-SLRGIRRTFEDCYA-------VRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQV 191 (277)
Q Consensus 129 ~kVVLYtt-SlcgiR~Tc~~C~~-------Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqV 191 (277)
..++||+- +++ |+.|.. ...-|...++.+.-+.++.....++.+ +..+ .++|.+
T Consensus 31 k~~ll~f~~~~~-----~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~-~~~~---~~~~~l 92 (154)
T PRK09437 31 QRVLVYFYPKAM-----TPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFA-EKEL---LNFTLL 92 (154)
T ss_pred CCEEEEEECCCC-----CCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHhC---CCCeEE
Confidence 34666664 322 467743 344455568887777665433333322 2233 456654
No 410
>PRK07220 DNA topoisomerase I; Validated
Probab=23.01 E-value=97 Score=33.21 Aligned_cols=49 Identities=29% Similarity=0.559 Sum_probs=28.4
Q ss_pred CCCCCCCc----------cceEeCCC---CCCcceeeeCC--CCcceeCCCCCc-------Cc----eeeCCCCC
Q 048504 227 FVCGSCGD----------VRFVPCGN---CSGSRKVFDEA--DGVPKRCLECNE-------NG----LIRCPDCC 275 (277)
Q Consensus 227 ~~C~~CGg----------~rfVpC~~---C~GS~Kv~~~~--~~~~~rC~~CNE-------nG----LvrCp~C~ 275 (277)
..|..||+ ..|+-|.. |.-........ .-....|+.|+. .| -+.||.|.
T Consensus 590 ~~CP~Cg~~l~~r~~r~g~~f~gCs~yp~C~~~~~l~~~g~~~~~~~~Cp~Cg~~~~k~~~~g~~~~~~~Cp~C~ 664 (740)
T PRK07220 590 GKCPLCGSDLMVRRSKRGSRFIGCEGYPECTFSLPLPKSGQIIVTDKVCEAHGLNHIRIINGGKRPWDLGCPQCN 664 (740)
T ss_pred cccccCCCeeeEEecCCCceEEEcCCCCCCCceeeCCCCCccccCCCCCCCCCCceEEEEecCCccceeeCCCCC
Confidence 57999984 34788864 76443221110 012357999974 12 46788885
No 411
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=22.71 E-value=88 Score=23.45 Aligned_cols=25 Identities=28% Similarity=0.720 Sum_probs=15.0
Q ss_pred CCCCCCccee--eeCCCCcceeCCCCC
Q 048504 240 CGNCSGSRKV--FDEADGVPKRCLECN 264 (277)
Q Consensus 240 C~~C~GS~Kv--~~~~~~~~~rC~~CN 264 (277)
||.|+---++ +.+++..++-|.+|.
T Consensus 12 CP~C~~~Dtl~~~~e~~~e~vECv~Cg 38 (59)
T TIGR02443 12 CPACSAQDTLAMWKENNIELVECVECG 38 (59)
T ss_pred CCCCcCccEEEEEEeCCceEEEeccCC
Confidence 6666655554 444444567777775
No 412
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=22.49 E-value=4.3e+02 Score=21.74 Aligned_cols=73 Identities=18% Similarity=0.303 Sum_probs=44.7
Q ss_pred CCcEEEEEecCCCCCCCChhHHHH----HHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEE--EeCCEEEech
Q 048504 128 EDRIVVYLTSLRGIRRTFEDCYAV----RMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQV--FIRGKHVGNA 201 (277)
Q Consensus 128 ~~kVVLYttSlcgiR~Tc~~C~~V----k~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqV--FI~G~~IGG~ 201 (277)
....|||.++-. .-++.+..+ =++++.++-.+.--=+. ++.-.+|..++|- ...|.+ |-+|+|+|-.
T Consensus 26 ~~~~vlf~~gDp---~r~~E~~DvaVILPEL~~af~~~~~~avv~--~~~e~~L~~r~gv--~~~PaLvf~R~g~~lG~i 98 (107)
T PF07449_consen 26 PGDAVLFFAGDP---ARFPETADVAVILPELVKAFPGRFRGAVVA--RAAERALAARFGV--RRWPALVFFRDGRYLGAI 98 (107)
T ss_dssp CSCEEEEESS-T---TTSTTCCHHHHHHHHHHCTSTTSEEEEEEE--HHHHHHHHHHHT---TSSSEEEEEETTEEEEEE
T ss_pred CCcEEEEECCCC---CcCcccccceeEcHHHHHhhhCccceEEEC--chhHHHHHHHhCC--ccCCeEEEEECCEEEEEe
Confidence 445777777754 234444443 34455555555433332 5667889999986 678876 6799999987
Q ss_pred hHHHHH
Q 048504 202 DVLKSM 207 (277)
Q Consensus 202 del~~L 207 (277)
..++..
T Consensus 99 ~gi~dW 104 (107)
T PF07449_consen 99 EGIRDW 104 (107)
T ss_dssp ESSSTH
T ss_pred cCeecc
Confidence 655443
No 413
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=22.49 E-value=56 Score=24.49 Aligned_cols=6 Identities=67% Similarity=1.608 Sum_probs=3.7
Q ss_pred CCCCCC
Q 048504 228 VCGSCG 233 (277)
Q Consensus 228 ~C~~CG 233 (277)
.|..||
T Consensus 9 ~CtSCg 14 (59)
T PRK14890 9 KCTSCG 14 (59)
T ss_pred cccCCC
Confidence 566665
No 414
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=22.22 E-value=1.6e+02 Score=24.12 Aligned_cols=36 Identities=14% Similarity=0.354 Sum_probs=21.6
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHh----C--CCeEEEEECC
Q 048504 127 TEDRIVVYLTSLRGIRRTFEDCYAVRMIFRG----F--RVWVDERDVS 168 (277)
Q Consensus 127 ~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~----~--gV~y~ErDVs 168 (277)
+...|++|+-- +||+|..+...+.. + +|.|..+.+.
T Consensus 15 ~~~~i~~f~D~------~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~ 56 (178)
T cd03019 15 GKPEVIEFFSY------GCPHCYNFEPILEAWVKKLPKDVKFEKVPVV 56 (178)
T ss_pred CCcEEEEEECC------CCcchhhhhHHHHHHHHhCCCCceEEEcCCc
Confidence 34456666665 46899976666543 2 4566655554
No 415
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=22.06 E-value=56 Score=26.72 Aligned_cols=21 Identities=29% Similarity=0.910 Sum_probs=15.1
Q ss_pred CCCCCCCccceEe-------CCCCCCcc
Q 048504 227 FVCGSCGDVRFVP-------CGNCSGSR 247 (277)
Q Consensus 227 ~~C~~CGg~rfVp-------C~~C~GS~ 247 (277)
..|+.||-.++++ ||.|++..
T Consensus 43 ~~C~~Cg~~~~~~~SCk~R~CP~C~~~~ 70 (111)
T PF14319_consen 43 YRCEDCGHEKIVYNSCKNRHCPSCQAKA 70 (111)
T ss_pred eecCCCCceEEecCcccCcCCCCCCChH
Confidence 5788888887776 66666653
No 416
>PRK11032 hypothetical protein; Provisional
Probab=22.06 E-value=83 Score=27.76 Aligned_cols=35 Identities=17% Similarity=0.450 Sum_probs=18.6
Q ss_pred ccceEeCCCCCCcceeeeCCCCcceeCCCCCcCceee
Q 048504 234 DVRFVPCGNCSGSRKVFDEADGVPKRCLECNENGLIR 270 (277)
Q Consensus 234 g~rfVpC~~C~GS~Kv~~~~~~~~~rC~~CNEnGLvr 270 (277)
|.+-+.|.+|+-..-+.. -+..-.||.|+...-.|
T Consensus 121 g~G~LvC~~Cg~~~~~~~--p~~i~pCp~C~~~~F~R 155 (160)
T PRK11032 121 GLGNLVCEKCHHHLAFYT--PEVLPLCPKCGHDQFQR 155 (160)
T ss_pred ecceEEecCCCCEEEecC--CCcCCCCCCCCCCeeee
Confidence 455566666665544332 23456666666554443
No 417
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=21.87 E-value=53 Score=26.93 Aligned_cols=7 Identities=29% Similarity=1.094 Sum_probs=3.7
Q ss_pred eCCCCCc
Q 048504 259 RCLECNE 265 (277)
Q Consensus 259 rC~~CNE 265 (277)
+||.|..
T Consensus 88 ~CP~Cgs 94 (113)
T PRK12380 88 QCPHCHG 94 (113)
T ss_pred cCcCCCC
Confidence 3666653
No 418
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.76 E-value=3.4e+02 Score=20.96 Aligned_cols=54 Identities=9% Similarity=0.101 Sum_probs=36.8
Q ss_pred ccCCCCCCcEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHH
Q 048504 122 IRLPGTEDRIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQC 179 (277)
Q Consensus 122 i~~~~~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke 179 (277)
+...+....+||..|... ....+..|++.-...++|+....-..=..+.+.|.+
T Consensus 42 l~~~i~~aD~VIv~t~~v----sH~~~~~vk~~akk~~ip~~~~~~~~~~~l~~~l~~ 95 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDYV----SHNAMWKVKKAAKKYGIPIIYSRSRGVSSLERALER 95 (97)
T ss_pred HHHhcCCCCEEEEEeCCc----ChHHHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHh
Confidence 444556667888888765 356688899999999999887764433345555443
No 419
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=21.73 E-value=55 Score=20.41 Aligned_cols=6 Identities=50% Similarity=1.170 Sum_probs=2.4
Q ss_pred eeCCCC
Q 048504 258 KRCLEC 263 (277)
Q Consensus 258 ~rC~~C 263 (277)
..|+.|
T Consensus 15 ~~Cp~C 20 (26)
T PF10571_consen 15 KFCPHC 20 (26)
T ss_pred CcCCCC
Confidence 344444
No 420
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=21.49 E-value=1.3e+02 Score=26.98 Aligned_cols=34 Identities=12% Similarity=0.048 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHh
Q 048504 148 CYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVF 181 (277)
Q Consensus 148 C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~l 181 (277)
-.+|+=||.-+|+...+-+++.||++..++.++.
T Consensus 72 L~RA~Yilkl~g~e~~sne~stDpe~Lmevle~~ 105 (168)
T KOG3192|consen 72 LARARYLLKLKGQEQTSNELSTDPEFLMEVLEYH 105 (168)
T ss_pred HHHHHHHHHHhCCCCchhhhccCHHHHHHHHHHH
Confidence 4578888999999999999999999988887775
No 421
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]
Probab=21.47 E-value=41 Score=32.70 Aligned_cols=35 Identities=20% Similarity=0.551 Sum_probs=25.4
Q ss_pred hcCCCCCCCCCCCCCCCc---------cceEeCCCCCCcceeee
Q 048504 217 LDGFPRRQPGFVCGSCGD---------VRFVPCGNCSGSRKVFD 251 (277)
Q Consensus 217 L~~~~~~~~~~~C~~CGg---------~rfVpC~~C~GS~Kv~~ 251 (277)
|..+........|.-||. .++.+|..|.|-||.+.
T Consensus 11 l~~l~~~~~Nk~CaDCga~~P~W~S~nlGvfiCi~CagvHRsLG 54 (319)
T COG5347 11 LKLLKSDSSNKKCADCGAPNPTWASVNLGVFLCIDCAGVHRSLG 54 (319)
T ss_pred HHHHhhccccCccccCCCCCCceEecccCeEEEeecchhhhccc
Confidence 333334445679999994 47888999999999643
No 422
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=21.44 E-value=58 Score=36.50 Aligned_cols=39 Identities=33% Similarity=0.804 Sum_probs=26.6
Q ss_pred CCCCCCCCCcc--------ceEeCCCCCCc-cee---eeCCCCcceeCCCCC
Q 048504 225 PGFVCGSCGDV--------RFVPCGNCSGS-RKV---FDEADGVPKRCLECN 264 (277)
Q Consensus 225 ~~~~C~~CGg~--------rfVpC~~C~GS-~Kv---~~~~~~~~~rC~~CN 264 (277)
++..|.-|||. -||.|-.|.-. ||. |.++++ ..-||.|+
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g-~~~cp~c~ 64 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEG-NQCCPQCN 64 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcC-CccCCccC
Confidence 46799999976 89999999765 443 333333 55666664
No 423
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=21.23 E-value=79 Score=21.51 Aligned_cols=7 Identities=29% Similarity=0.814 Sum_probs=2.9
Q ss_pred eeCCCCC
Q 048504 258 KRCLECN 264 (277)
Q Consensus 258 ~rC~~CN 264 (277)
..|+.|+
T Consensus 21 ~vC~~Cg 27 (52)
T smart00661 21 FVCRKCG 27 (52)
T ss_pred EECCcCC
Confidence 3344443
No 424
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=21.18 E-value=5.2e+02 Score=22.01 Aligned_cols=59 Identities=14% Similarity=0.218 Sum_probs=37.7
Q ss_pred cEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhCCCCCCCcEEEe---CCEEE
Q 048504 130 RIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFGGKNVTLPQVFI---RGKHV 198 (277)
Q Consensus 130 kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG~~~~tvPqVFI---~G~~I 198 (277)
++.|+.-+.- ..=..++.++..+++.|..+.+..+ ...++...+|. ..+|.+|| +|+.+
T Consensus 65 ~~~vV~Vs~D------~~~~~~~~f~~~~~~~~~~~p~~~~--~~~~l~~~y~v--~~iPt~vlId~~G~Vv 126 (146)
T cd03008 65 QLALVYVSMD------QSEQQQESFLKDMPKKWLFLPFEDE--FRRELEAQFSV--EELPTVVVLKPDGDVL 126 (146)
T ss_pred CEEEEEEECC------CCHHHHHHHHHHCCCCceeecccch--HHHHHHHHcCC--CCCCEEEEECCCCcEE
Confidence 3555555532 2335688999999988755444332 33467777765 68999875 57766
No 425
>PF13408 Zn_ribbon_recom: Recombinase zinc beta ribbon domain
Probab=21.03 E-value=1.6e+02 Score=20.12 Aligned_cols=36 Identities=22% Similarity=0.496 Sum_probs=25.6
Q ss_pred ceEeCCCCCCcceeeeCC-CCcceeCCCCCcCceeeCC
Q 048504 236 RFVPCGNCSGSRKVFDEA-DGVPKRCLECNENGLIRCP 272 (277)
Q Consensus 236 rfVpC~~C~GS~Kv~~~~-~~~~~rC~~CNEnGLvrCp 272 (277)
+.|.|+.|+......... .....+|....+.|. .|+
T Consensus 4 g~l~C~~CG~~m~~~~~~~~~~yy~C~~~~~~~~-~C~ 40 (58)
T PF13408_consen 4 GLLRCGHCGSKMTRRKRKGKYRYYRCSNRRRKGK-GCP 40 (58)
T ss_pred CcEEcccCCcEeEEEECCCCceEEEcCCCcCCCC-CCC
Confidence 567788888876665442 335789999998886 365
No 426
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=20.82 E-value=1.3e+02 Score=28.29 Aligned_cols=48 Identities=23% Similarity=0.261 Sum_probs=31.3
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHH---HHHHHHhCC
Q 048504 129 DRIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYK---KELQCVFGG 183 (277)
Q Consensus 129 ~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~r---eELke~lG~ 183 (277)
-+|+|-.+.. -|..+..-||+..++.++..-.-+-+.++ +++..++|.
T Consensus 61 ~kiaVA~SGG-------~DSsas~iilR~~g~~v~p~t~~Lp~~ir~n~~~l~~~lg~ 111 (255)
T COG1365 61 PKIAVAYSGG-------VDSSASAIILRWAGFTVDPGTAILPDHIRRNKEELETLLGE 111 (255)
T ss_pred ceEEEEecCC-------cchHHHHHHHHhhceeeccccccCCHHHhHHHHHHHHHHcc
Confidence 4566655554 38899999999999776665555554554 444555654
No 427
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.71 E-value=2.6e+02 Score=25.26 Aligned_cols=64 Identities=13% Similarity=0.205 Sum_probs=35.8
Q ss_pred CCCCCcEEEEEecCCCCCCCChhHHHHHHHHHhC---------CCeEEEEECCCCHH------------HHHHHHHHhCC
Q 048504 125 PGTEDRIVVYLTSLRGIRRTFEDCYAVRMIFRGF---------RVWVDERDVSMDSA------------YKKELQCVFGG 183 (277)
Q Consensus 125 ~~~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~---------gV~y~ErDVs~d~~------------~reELke~lG~ 183 (277)
|.+..-+++|.+. +|++|.+.+.-+... .+.+.+++++.... --+||.+.++.
T Consensus 40 ~~~Kylllmfes~------~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~v 113 (182)
T COG2143 40 PNDKYLLLMFESN------GCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAV 113 (182)
T ss_pred ccCcEEEEEEcCC------CChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcc
Confidence 4444456677664 678999766544321 13344555543211 12578888865
Q ss_pred CCCCCcEE-EeCCE
Q 048504 184 KNVTLPQV-FIRGK 196 (277)
Q Consensus 184 ~~~tvPqV-FI~G~ 196 (277)
++.|.+ |.|++
T Consensus 114 --rstPtfvFfdk~ 125 (182)
T COG2143 114 --RSTPTFVFFDKT 125 (182)
T ss_pred --ccCceEEEEcCC
Confidence 667776 56654
No 428
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=20.71 E-value=77 Score=22.97 Aligned_cols=30 Identities=20% Similarity=0.503 Sum_probs=18.7
Q ss_pred ceEeCCCCCCcceee--eCCCCcceeCCCCCc
Q 048504 236 RFVPCGNCSGSRKVF--DEADGVPKRCLECNE 265 (277)
Q Consensus 236 rfVpC~~C~GS~Kv~--~~~~~~~~rC~~CNE 265 (277)
--+.|.+|+..-=.. .+.+...-+|+.|+.
T Consensus 21 ~aLIC~~C~~hNGla~~~~~~~i~y~C~~Cg~ 52 (54)
T PF10058_consen 21 YALICSKCFSHNGLAPKEEFEEIQYRCPYCGA 52 (54)
T ss_pred eeEECcccchhhcccccccCCceEEEcCCCCC
Confidence 345688887664443 222345778888874
No 429
>PRK11827 hypothetical protein; Provisional
Probab=20.71 E-value=99 Score=23.09 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=16.6
Q ss_pred eEeCCCCCCcceeeeCCCCcceeCCCCCc
Q 048504 237 FVPCGNCSGSRKVFDEADGVPKRCLECNE 265 (277)
Q Consensus 237 fVpC~~C~GS~Kv~~~~~~~~~rC~~CNE 265 (277)
.+.|+.|+|.-+ ++.+ ...+.|..|+-
T Consensus 8 ILaCP~ckg~L~-~~~~-~~~Lic~~~~l 34 (60)
T PRK11827 8 IIACPVCNGKLW-YNQE-KQELICKLDNL 34 (60)
T ss_pred heECCCCCCcCe-EcCC-CCeEECCccCe
Confidence 467888888654 3322 23577777753
No 430
>COG3585 MopI Molybdopterin-binding protein [Coenzyme metabolism]
Probab=20.61 E-value=23 Score=27.21 Aligned_cols=15 Identities=47% Similarity=0.760 Sum_probs=12.1
Q ss_pred Hhhccccchhhhhhh
Q 048504 63 LAASNSFKGKVKQLR 77 (277)
Q Consensus 63 ~~~~~~~~~~~~~~~ 77 (277)
++|-|-|||+||++-
T Consensus 3 isaRN~lKG~Vk~iv 17 (69)
T COG3585 3 ISARNQLKGKVKEIV 17 (69)
T ss_pred cchhheeccEEEEEE
Confidence 467899999998864
No 431
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=20.56 E-value=2.8e+02 Score=28.33 Aligned_cols=67 Identities=10% Similarity=0.066 Sum_probs=45.1
Q ss_pred CCCChhHHHHHHHHHhC--CCe-EEEEECCCCHHHH-HHHHHHh---CCCCCCCcEEEe-------CCEEEechhHHHHH
Q 048504 142 RRTFEDCYAVRMIFRGF--RVW-VDERDVSMDSAYK-KELQCVF---GGKNVTLPQVFI-------RGKHVGNADVLKSM 207 (277)
Q Consensus 142 R~Tc~~C~~Vk~iL~~~--gV~-y~ErDVs~d~~~r-eELke~l---G~~~~tvPqVFI-------~G~~IGG~del~~L 207 (277)
|..||+=.+|.-+=+.+ +++ |..--|..+|+.. +.|+++. |-....-|.|+= .|..|||+.|++++
T Consensus 1 ~~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~ 80 (452)
T cd05295 1 RADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEY 80 (452)
T ss_pred CCCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHH
Confidence 34577777666555543 343 8888888888644 4444443 322367899873 78999999999986
Q ss_pred H
Q 048504 208 Y 208 (277)
Q Consensus 208 ~ 208 (277)
.
T Consensus 81 ~ 81 (452)
T cd05295 81 A 81 (452)
T ss_pred H
Confidence 4
No 432
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=20.48 E-value=60 Score=24.61 Aligned_cols=25 Identities=32% Similarity=0.719 Sum_probs=13.3
Q ss_pred eCCCCCCcceeeeCC---CCcceeCCCCC
Q 048504 239 PCGNCSGSRKVFDEA---DGVPKRCLECN 264 (277)
Q Consensus 239 pC~~C~GS~Kv~~~~---~~~~~rC~~CN 264 (277)
||+ |+-...+..++ +..+-|||.|.
T Consensus 24 PCP-CGDRFeIsLeDl~~GE~VArCPSCS 51 (67)
T COG5216 24 PCP-CGDRFEISLEDLRNGEVVARCPSCS 51 (67)
T ss_pred cCC-CCCEeEEEHHHhhCCceEEEcCCce
Confidence 444 44444444332 34577888884
No 433
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=20.31 E-value=3.9e+02 Score=20.16 Aligned_cols=49 Identities=10% Similarity=0.078 Sum_probs=38.2
Q ss_pred CCCcEEEEEecCCCCCCCChhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHhC
Q 048504 127 TEDRIVVYLTSLRGIRRTFEDCYAVRMIFRGFRVWVDERDVSMDSAYKKELQCVFG 182 (277)
Q Consensus 127 ~~~kVVLYttSlcgiR~Tc~~C~~Vk~iL~~~gV~y~ErDVs~d~~~reELke~lG 182 (277)
...+++||+.+. ..+..+...|...++.+..+.=.++...+.++.+.+.
T Consensus 27 ~~~~~lvf~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~ 75 (131)
T cd00079 27 KGGKVLIFCPSK-------KMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFR 75 (131)
T ss_pred CCCcEEEEeCcH-------HHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHH
Confidence 356789998864 5899999999988888888877777777777776654
No 434
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=20.12 E-value=52 Score=21.10 Aligned_cols=18 Identities=39% Similarity=0.946 Sum_probs=12.5
Q ss_pred eeCCCCCcCceeeCCCCC
Q 048504 258 KRCLECNENGLIRCPDCC 275 (277)
Q Consensus 258 ~rC~~CNEnGLvrCp~C~ 275 (277)
..|..|+..+.-+||.|.
T Consensus 3 ~~C~vC~~~~kY~Cp~C~ 20 (30)
T PF04438_consen 3 KLCSVCGNPAKYRCPRCG 20 (30)
T ss_dssp EEETSSSSEESEE-TTT-
T ss_pred CCCccCcCCCEEECCCcC
Confidence 467778888888888874
No 435
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=20.04 E-value=97 Score=23.30 Aligned_cols=28 Identities=29% Similarity=0.659 Sum_probs=19.3
Q ss_pred eEeCCCCCCcceeeeCCCCcceeCCCCCcC
Q 048504 237 FVPCGNCSGSRKVFDEADGVPKRCLECNEN 266 (277)
Q Consensus 237 fVpC~~C~GS~Kv~~~~~~~~~rC~~CNEn 266 (277)
.+.|+.|+|- =.+.++ ...+-|+.|+.-
T Consensus 8 iLaCP~~kg~-L~~~~~-~~~L~c~~~~~a 35 (60)
T COG2835 8 ILACPVCKGP-LVYDEE-KQELICPRCKLA 35 (60)
T ss_pred eeeccCcCCc-ceEecc-CCEEEecccCce
Confidence 4679999998 333333 347899998853
Done!