BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048507
(1448 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii
Effector Xcv3220 (Xopl)
Length = 328
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 17/142 (11%)
Query: 1125 LEELDINSCPSLTCIFSKNELPATLESLEVGNLPE---SLKSLRV-WDCPKLESIAERLD 1180
L EL I +CP LT ELP L S + + +L+SLR+ W + S+ +
Sbjct: 152 LRELSIRACPELT------ELPEPLASTDASGEHQGLVNLQSLRLEWT--GIRSLPASIA 203
Query: 1181 NNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPK--GGLPGAKLTRLEI 1238
N +L+ ++I L L +H+L +L+E+++R C L ++P GG A L RL +
Sbjct: 204 NLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG--RAPLKRLIL 260
Query: 1239 SDCNRLEALPKGLHNLKSLQEL 1260
DC+ L LP +H L L++L
Sbjct: 261 KDCSNLLTLPLDIHRLTQLEKL 282
Score = 37.0 bits (84), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 8/118 (6%)
Query: 585 PSILTELFKLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPESVNKLYNLH 644
P + F+L L+ ++ + ELPD+ L L+ +R LP S+ L L
Sbjct: 94 PQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLR 153
Query: 645 SLLLEDCDRLKKLCADMGNL-AKLHHLKNSNTKSL-------EEMPVGIGRLTSLQTL 694
L + C L +L + + A H N +SL +P I L +L++L
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 1149 LESLEVGNLPESLKSLRVWDCPKLESIAER-----------LDNNTSLEIIRIAYCENLK 1197
L+SL++ N P S + PKLE + R L+ + + C NL
Sbjct: 208 LKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267
Query: 1198 ILPSGLHNLRQLQEIEIRRCGNLVSFP 1224
LP +H L QL+++++R C NL P
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 28/182 (15%)
Query: 1029 SLVSFPEVALPA------KLRIISINSCDALKWLPEAWMCDFNSSLE---ILSIECCRSL 1079
+L P ALPA +LR +SI +C L LPE + ++S E +++++ R L
Sbjct: 133 TLARNPLRALPASIASLNRLRELSIRACPELTELPEP-LASTDASGEHQGLVNLQSLR-L 190
Query: 1080 TYIAGVQLPPSLKRLYIEFCDNIRTLTVEEGVQXXXXXXXXXXXLLEELDINSCPSLTCI 1139
+ LP S+ L N+++L + LEELD+ C +L
Sbjct: 191 EWTGIRSLPASIANL-----QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTAL--- 242
Query: 1140 FSKNELPATLESLEVGNLPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKIL 1199
+N P + G P LK L + DC L ++ + T LE + + C NL L
Sbjct: 243 --RNYPP-----IFGGRAP--LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293
Query: 1200 PS 1201
PS
Sbjct: 294 PS 295
Score = 34.3 bits (77), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 21/148 (14%)
Query: 1168 DCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGG 1227
D L + + LE + +A L+ LP+ + +L +L+E+ IR C L P+
Sbjct: 112 DAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNRLRELSIRACPELTELPEP- 169
Query: 1228 LPGAKLTRLEISDCNRLEALPKGLHNLKSLQELRIGVELPSLEEDGLPTNLHSLGIRGNM 1287
L +D + +GL NL+SL+ G+ LP ++ +L ++
Sbjct: 170 --------LASTDASGEH---QGLVNLQSLRLEWTGIR-------SLPASIANLQNLKSL 211
Query: 1288 EIWKSTIER-GRGFHRFSSLQHLTIEGC 1314
+I S + G H L+ L + GC
Sbjct: 212 KIRNSPLSALGPAIHHLPKLEELDLRGC 239
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 95/240 (39%), Gaps = 64/240 (26%)
Query: 301 DDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQEVAD-IMGTASAYQLKKLSIDDCLAV 359
DDVW+ WV +A +I++TTR++ V D +MG V
Sbjct: 243 DDVWDS----WV-----LKAFDSQCQILLTTRDKSVTDSVMGPK-------------YVV 280
Query: 360 VAQHSLGSDKLLE--------------EIGKKIVAKCDGLPLAAQTLGGLLRGKCDRSDW 405
+ SLG +K LE E I+ +C G PL +G LLR +R W
Sbjct: 281 PVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNR--W 338
Query: 406 EDLLSCKIWNLPEERC---------DIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEE 456
E L ++ N +R + A+ +S L +K + S+ KD +
Sbjct: 339 EYYLK-QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPT 397
Query: 457 EEIILLWCASGFLDHKESGNPNEDLGRK--FFQELRGRSFFQQSSNNISRFVMHDLINDL 514
+ + +LW ++ +E + ++ K F + G+SF R+ +HDL D
Sbjct: 398 KVLCILWD----METEEVEDILQEFVNKSLLFCDRNGKSF---------RYYLHDLQVDF 444
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 38.1 bits (87), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 93/244 (38%), Gaps = 72/244 (29%)
Query: 301 DDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQEVAD-IMGTASAYQLKKLSIDDCLAV 359
DDVW+ WV +A +I++TTR++ V D +MG V
Sbjct: 249 DDVWDS----WV-----LKAFDSQCQILLTTRDKSVTDSVMGPK-------------YVV 286
Query: 360 VAQHSLGSDKLLE--------------EIGKKIVAKCDGLPLAAQTLGGLLRGKCDRSDW 405
+ SLG +K LE E I+ +C G PL +G LLR +R W
Sbjct: 287 PVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNR--W 344
Query: 406 EDLLSCKIWNLPEERC---------DIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEE 456
E L ++ N +R + A+ +S L +K + S+ KD +
Sbjct: 345 EYYLK-QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPT 403
Query: 457 EEIILLWCASGFLDHKESGNPNEDLGRKF------FQELRGRSFFQQSSNNISRFVMHDL 510
+ + +LW ED+ ++F F + G+SF R+ +HDL
Sbjct: 404 KVLCILW--------DMETEEVEDILQEFVNKSLLFCDRNGKSF---------RYYLHDL 446
Query: 511 INDL 514
D
Sbjct: 447 QVDF 450
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 12/122 (9%)
Query: 576 SNSLHGYLAPSILTELFKLQRLRVFSLRGYRIDELPDSI-GDLRYFRYLNLSGTEIRTLP 634
+NSL L + EL L +L L G ++ LP+ + L YLNLS ++++LP
Sbjct: 37 TNSLKS-LPNGVFDELTSLTQLY---LGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 635 ESV-NKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSN--TKSLEEMPVGI-GRLTS 690
V +KL L L L + ++L+ L G KL LK+ L+ +P G+ RLTS
Sbjct: 93 NGVFDKLTQLKELAL-NTNQLQSL--PDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149
Query: 691 LQ 692
LQ
Sbjct: 150 LQ 151
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 586 SILTELFKLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPESVNKLYNLHS 645
+I +FK L L G + ELP I +L R L+LS + +LP + + L
Sbjct: 238 NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297
Query: 646 LLLEDCDRLKKLCADMGNLAKLHHL 670
D + + L + GNL L L
Sbjct: 298 FYFFD-NMVTTLPWEFGNLCNLQFL 321
Score = 30.0 bits (66), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 582 YLAPSILTEL----FKLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPESV 637
YL + LTEL L LRV L R+ LP +G +Y + TLP
Sbjct: 253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEF 312
Query: 638 NKLYNLHSLLLE 649
L NL L +E
Sbjct: 313 GNLCNLQFLGVE 324
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 34.3 bits (77), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 564 IQHLRTFLPVMLSNSLHGYLAPSILTELFKLQRLRVFSLRGYRIDELPDSIGDLRYFRYL 623
++HL + LS + + S+L EL +LQ +++ + ++ P + L Y R L
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE--PYAFRGLNYLRVL 301
Query: 624 NLSGTEIRTLPESV-NKLYNLHSLLLE 649
N+SG ++ TL ESV + + NL +L+L+
Sbjct: 302 NVSGNQLTTLEESVFHSVGNLETLILD 328
>pdb|1VHB|A Chain A, Bacterial Dimeric Hemoglobin From Vitreoscilla Stercoraria
pdb|1VHB|B Chain B, Bacterial Dimeric Hemoglobin From Vitreoscilla Stercoraria
pdb|2VHB|A Chain A, Azide Adduct Of The Bacterial Hemoglobin From Vitreoscilla
Stercoraria
pdb|2VHB|B Chain B, Azide Adduct Of The Bacterial Hemoglobin From Vitreoscilla
Stercoraria
pdb|3VHB|A Chain A, Imidazole Adduct Of The Bacterial Hemoglobin From
Vitreoscilla Sp.
pdb|3VHB|B Chain B, Imidazole Adduct Of The Bacterial Hemoglobin From
Vitreoscilla Sp.
pdb|4VHB|A Chain A, Thiocyanate Adduct Of The Bacterial Hemoglobin From
Vitreoscilla Sp.
pdb|4VHB|B Chain B, Thiocyanate Adduct Of The Bacterial Hemoglobin From
Vitreoscilla Sp
Length = 146
Score = 33.5 bits (75), Expect = 0.86, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 842 PKLRELQILSCSKLQGTFPEHLPALEKLVIKGCEELSVLVSSLPALCKLQIGGCKKVVWR 901
PK + +L+ ++ P LPA++K+ +K C+ V + P + + +G K+V+
Sbjct: 54 PKALAMTVLAAAQNIENLPAILPAVKKIAVKHCQA-GVAAAHYPIVGQELLGAIKEVLGD 112
Query: 902 SATDHL 907
+ATD +
Sbjct: 113 AATDDI 118
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 605 YRIDELPDSIGDLRYFR----YLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCAD 660
Y +P S+G L R +LN+ EI P+ + + L +L+L+ D ++ +
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEI---PQELMYVKTLETLILDFNDLTGEIPSG 485
Query: 661 MGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL 694
+ N L+ + SN + E+P IGRL +L L
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 605 YRIDELPDSIGDLRYFR----YLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCAD 660
Y +P S+G L R +LN+ EI P+ + + L +L+L+ D ++ +
Sbjct: 426 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEI---PQELMYVKTLETLILDFNDLTGEIPSG 482
Query: 661 MGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL 694
+ N L+ + SN + E+P IGRL +L L
Sbjct: 483 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 516
>pdb|3ZYV|A Chain A, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|B Chain B, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|C Chain C, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|D Chain D, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
Length = 1335
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 205 LRDDLSNDGGFSVIPIIGMG--------GLGKTTLAQLVYNDK-----RVQDHFDLKAWT 251
+R D+ DG FS+ P + +G GLG TL +L Y+ + R + + + T
Sbjct: 1179 IRTDIVMDGSFSINPAVDIGQIEGAFVQGLGLYTLEELKYSPEGVLYTRGPHQYKIASVT 1238
Query: 252 CVSDDFDVKGLTKT 265
+ ++F V LT T
Sbjct: 1239 DIPEEFHVSLLTPT 1252
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 58/105 (55%), Gaps = 8/105 (7%)
Query: 594 LQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPESV-NKLYNLHSLLLEDCD 652
L +R +L G ++ ++ ++ +L YL L+G ++++LP V +KL NL L+L + +
Sbjct: 62 LPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-N 119
Query: 653 RLKKLCADMGNLAKLHHLK--NSNTKSLEEMPVGI-GRLTSLQTL 694
+L+ L G KL +L N L+ +P G+ +LT+L L
Sbjct: 120 QLQSLPD--GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 58/107 (54%), Gaps = 12/107 (11%)
Query: 594 LQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPESV-NKLYNLHSLLLEDCD 652
L +R +L G ++ ++ ++ +L YL L+G ++++LP V +KL NL L+L + +
Sbjct: 62 LPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-N 119
Query: 653 RLKKL----CADMGNLAKLHHLKNSNTKSLEEMPVGI-GRLTSLQTL 694
+L+ L + NL L+ N L+ +P G+ +LT+L L
Sbjct: 120 QLQSLPDGVFDKLTNLTYLYLYHN----QLQSLPKGVFDKLTNLTRL 162
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 73/174 (41%), Gaps = 23/174 (13%)
Query: 301 DDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQEVAD-IMGTASAYQLKK-LSIDDCLA 358
DDVW+ WV +A +I++TTR++ V D +MG ++ L + L
Sbjct: 243 DDVWDP----WV-----LKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLE 293
Query: 359 VVAQHSLGSDKLLEEIGKKIVAKCDGLPLAAQTLGGLLRGKCDRSDWEDLLSCKIWNLPE 418
+++ + L I+ +C G PL +G LLR +R W L ++ N
Sbjct: 294 ILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNR--WAYYLR-QLQNKQF 350
Query: 419 ERC---------DIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLW 463
+R + A+ +S L +K + S+ KD + + + +LW
Sbjct: 351 KRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLW 404
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.4 bits (67), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 28/139 (20%)
Query: 567 LRTFLPVMLSNSLHGYLAPSILTELFKLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLS 626
LR + LS + + L+ S + LQRL + + +D P LR L+LS
Sbjct: 429 LRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLS 488
Query: 627 GTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKL-----------------H- 668
I + E LLE + L+ L NLA+L H
Sbjct: 489 NNNIANINED----------LLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHL 538
Query: 669 HLKNSNTKSLEEMPVGIGR 687
H+ N + L+E+PVG+ +
Sbjct: 539 HILNLESNGLDEIPVGVFK 557
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,860,612
Number of Sequences: 62578
Number of extensions: 1660639
Number of successful extensions: 3723
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 3686
Number of HSP's gapped (non-prelim): 50
length of query: 1448
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1337
effective length of database: 8,027,179
effective search space: 10732338323
effective search space used: 10732338323
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)