Query 048507
Match_columns 1448
No_of_seqs 862 out of 6405
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 10:08:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048507.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048507hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 9.4E-78 2E-82 743.9 46.3 647 8-699 4-675 (889)
2 PLN03210 Resistant to P. syrin 100.0 9.5E-61 2.1E-65 632.4 51.8 473 187-694 183-686 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.9E-39 6.3E-44 367.8 15.1 274 193-472 1-285 (287)
4 PLN00113 leucine-rich repeat r 100.0 1.1E-36 2.3E-41 407.4 28.0 203 1160-1396 405-607 (968)
5 PLN00113 leucine-rich repeat r 100.0 7.8E-35 1.7E-39 389.5 28.3 225 1160-1396 357-584 (968)
6 KOG0618 Serine/threonine phosp 99.9 5.3E-27 1.1E-31 272.4 -8.1 489 585-1313 11-509 (1081)
7 KOG0472 Leucine-rich repeat pr 99.9 3.2E-27 6.9E-32 248.0 -10.3 106 587-694 60-165 (565)
8 KOG4194 Membrane glycoprotein 99.9 4.2E-24 9.2E-29 234.8 4.2 361 994-1391 79-447 (873)
9 KOG0472 Leucine-rich repeat pr 99.9 4.1E-26 8.8E-31 239.8 -11.4 109 584-694 80-188 (565)
10 PLN03210 Resistant to P. syrin 99.9 1.8E-21 4E-26 258.9 22.5 132 960-1105 589-720 (1153)
11 KOG0618 Serine/threonine phosp 99.9 6.9E-24 1.5E-28 246.8 -1.6 459 593-1262 43-507 (1081)
12 KOG4194 Membrane glycoprotein 99.9 1.1E-22 2.3E-27 223.9 5.0 340 993-1369 102-448 (873)
13 KOG0444 Cytoskeletal regulator 99.8 5.2E-22 1.1E-26 219.3 -6.1 325 953-1354 48-380 (1255)
14 KOG0444 Cytoskeletal regulator 99.8 1.8E-21 3.8E-26 215.2 -2.0 145 541-694 8-155 (1255)
15 PRK15387 E3 ubiquitin-protein 99.5 8.7E-14 1.9E-18 170.4 15.6 56 1304-1372 402-457 (788)
16 PRK15387 E3 ubiquitin-protein 99.5 2E-13 4.4E-18 167.2 13.0 79 595-683 201-279 (788)
17 KOG4237 Extracellular matrix p 99.5 1.3E-14 2.8E-19 154.0 1.2 97 597-694 69-169 (498)
18 PRK04841 transcriptional regul 99.4 3.5E-11 7.5E-16 161.2 25.9 293 187-519 13-332 (903)
19 KOG0617 Ras suppressor protein 99.3 6E-14 1.3E-18 131.0 -4.2 103 591-694 29-132 (264)
20 PRK15370 E3 ubiquitin-protein 99.3 8.1E-12 1.8E-16 154.7 10.5 90 595-694 178-267 (754)
21 PRK15370 E3 ubiquitin-protein 99.3 1E-11 2.2E-16 153.9 11.2 202 1159-1395 220-427 (754)
22 KOG0617 Ras suppressor protein 99.3 1.5E-13 3.4E-18 128.3 -5.0 111 584-695 45-156 (264)
23 PRK00411 cdc6 cell division co 99.2 2.3E-09 5E-14 127.9 25.3 295 186-497 28-357 (394)
24 KOG4658 Apoptotic ATPase [Sign 99.1 3.7E-11 7.9E-16 151.4 5.4 124 593-717 543-671 (889)
25 KOG4237 Extracellular matrix p 99.1 3.8E-12 8.1E-17 135.6 -3.3 230 1155-1394 63-357 (498)
26 COG2909 MalT ATP-dependent tra 99.1 3.7E-09 8.1E-14 125.3 21.1 297 187-521 18-340 (894)
27 TIGR02928 orc1/cdc6 family rep 99.1 2.3E-08 4.9E-13 118.1 25.5 297 187-498 14-350 (365)
28 PF01637 Arch_ATPase: Archaeal 99.0 1.3E-09 2.8E-14 120.3 11.0 193 190-391 1-233 (234)
29 TIGR03015 pepcterm_ATPase puta 99.0 2.1E-08 4.5E-13 112.8 20.2 177 215-396 43-242 (269)
30 TIGR00635 ruvB Holliday juncti 98.9 2.1E-08 4.6E-13 114.8 18.4 275 188-499 4-290 (305)
31 PRK00080 ruvB Holliday junctio 98.9 6.3E-09 1.4E-13 119.5 13.9 276 188-499 25-311 (328)
32 cd00116 LRR_RI Leucine-rich re 98.9 1E-10 2.2E-15 136.1 -2.0 103 1160-1262 52-172 (319)
33 cd00116 LRR_RI Leucine-rich re 98.9 1.4E-10 3E-15 134.9 -2.5 234 1160-1398 24-293 (319)
34 COG3899 Predicted ATPase [Gene 98.9 2.4E-08 5.2E-13 127.0 17.2 309 189-517 1-384 (849)
35 PF05729 NACHT: NACHT domain 98.8 1.5E-08 3.3E-13 104.7 10.2 143 216-363 1-162 (166)
36 PTZ00112 origin recognition co 98.8 2.8E-07 6.1E-12 110.3 20.9 293 187-497 754-1085(1164)
37 COG2256 MGS1 ATPase related to 98.6 3.9E-07 8.5E-12 99.4 13.0 169 184-387 26-207 (436)
38 PF14580 LRR_9: Leucine-rich r 98.6 7.7E-08 1.7E-12 96.7 5.6 111 589-702 35-153 (175)
39 PRK06893 DNA replication initi 98.5 7E-07 1.5E-11 96.4 12.4 153 215-394 39-205 (229)
40 KOG4341 F-box protein containi 98.5 4.7E-09 1E-13 113.6 -4.6 55 1160-1214 402-459 (483)
41 PRK15386 type III secretion pr 98.5 4.6E-07 1E-11 102.0 10.5 93 1179-1285 48-141 (426)
42 KOG4341 F-box protein containi 98.5 8.1E-09 1.8E-13 111.8 -3.6 140 957-1103 161-308 (483)
43 PF13401 AAA_22: AAA domain; P 98.4 4E-07 8.7E-12 89.6 7.0 117 215-333 4-125 (131)
44 KOG3207 Beta-tubulin folding c 98.4 5.8E-08 1.2E-12 106.0 1.0 84 1160-1243 223-313 (505)
45 PRK13342 recombination factor 98.4 3.8E-06 8.3E-11 99.6 16.4 173 188-393 12-197 (413)
46 PF05496 RuvB_N: Holliday junc 98.4 3.9E-06 8.5E-11 85.8 13.3 181 188-397 24-226 (233)
47 PTZ00202 tuzin; Provisional 98.4 3.4E-05 7.4E-10 86.1 21.3 169 183-363 257-433 (550)
48 PRK07003 DNA polymerase III su 98.4 8.7E-06 1.9E-10 97.9 18.0 195 188-394 16-223 (830)
49 KOG0532 Leucine-rich repeat (L 98.4 1.9E-08 4E-13 113.1 -4.0 160 584-755 87-246 (722)
50 TIGR03420 DnaA_homol_Hda DnaA 98.4 1.8E-06 3.9E-11 94.2 11.5 170 193-395 22-204 (226)
51 PRK14961 DNA polymerase III su 98.4 6.8E-06 1.5E-10 95.5 16.5 190 188-389 16-217 (363)
52 PRK04195 replication factor C 98.4 1.8E-05 3.8E-10 96.0 20.6 246 188-471 14-271 (482)
53 PRK05564 DNA polymerase III su 98.4 9.4E-06 2E-10 92.7 17.1 179 188-391 4-189 (313)
54 PF13855 LRR_8: Leucine rich r 98.3 4.1E-07 8.8E-12 74.8 4.1 57 595-651 1-59 (61)
55 COG3903 Predicted ATPase [Gene 98.3 6.4E-07 1.4E-11 98.7 6.6 286 214-519 13-314 (414)
56 PRK12402 replication factor C 98.3 5.5E-06 1.2E-10 96.8 15.0 194 188-390 15-224 (337)
57 PF14580 LRR_9: Leucine-rich r 98.3 2.7E-07 5.9E-12 92.7 3.2 98 593-694 17-118 (175)
58 PRK14963 DNA polymerase III su 98.3 1.3E-06 2.8E-11 104.4 9.2 193 188-389 14-214 (504)
59 PRK14960 DNA polymerase III su 98.3 1.6E-05 3.6E-10 94.6 18.2 190 188-389 15-216 (702)
60 KOG2028 ATPase related to the 98.3 1.4E-05 3.1E-10 85.2 15.4 172 184-386 140-330 (554)
61 KOG3207 Beta-tubulin folding c 98.3 1.4E-07 3E-12 103.1 0.5 186 1178-1369 141-335 (505)
62 COG4886 Leucine-rich repeat (L 98.3 4.6E-07 1E-11 108.4 5.0 108 588-697 109-217 (394)
63 PRK14949 DNA polymerase III su 98.3 8.2E-06 1.8E-10 100.3 15.2 193 188-392 16-221 (944)
64 PF13173 AAA_14: AAA domain 98.3 2.3E-06 5.1E-11 83.0 8.2 119 216-356 3-127 (128)
65 KOG0532 Leucine-rich repeat (L 98.3 5.5E-08 1.2E-12 109.4 -3.5 171 1163-1377 79-250 (722)
66 cd00009 AAA The AAA+ (ATPases 98.3 4.4E-06 9.6E-11 84.5 10.7 125 191-335 1-131 (151)
67 COG1474 CDC6 Cdc6-related prot 98.3 3.2E-05 6.9E-10 88.5 18.1 172 188-364 17-203 (366)
68 PRK12323 DNA polymerase III su 98.2 9.8E-06 2.1E-10 96.2 13.8 195 188-391 16-224 (700)
69 PF13191 AAA_16: AAA ATPase do 98.2 1.1E-06 2.3E-11 92.8 5.2 49 189-240 1-49 (185)
70 PLN03150 hypothetical protein; 98.2 1.1E-06 2.3E-11 109.8 6.0 93 596-688 419-513 (623)
71 PLN03150 hypothetical protein; 98.2 1E-06 2.2E-11 109.9 5.8 94 1160-1253 419-512 (623)
72 PRK15386 type III secretion pr 98.2 3.1E-06 6.7E-11 95.5 8.9 32 1207-1241 156-187 (426)
73 PRK06645 DNA polymerase III su 98.2 1.5E-05 3.3E-10 94.8 14.9 192 188-388 21-225 (507)
74 PF13855 LRR_8: Leucine rich r 98.2 1.1E-06 2.5E-11 72.1 3.7 59 618-676 1-60 (61)
75 PRK14956 DNA polymerase III su 98.2 3.3E-06 7.1E-11 97.8 8.6 188 188-387 18-217 (484)
76 PLN03025 replication factor C 98.2 1E-05 2.2E-10 92.6 12.7 179 188-387 13-195 (319)
77 TIGR02903 spore_lon_C ATP-depe 98.2 2.3E-05 4.9E-10 96.9 16.4 199 188-393 154-396 (615)
78 PRK00440 rfc replication facto 98.2 2.1E-05 4.5E-10 91.2 15.2 179 188-389 17-200 (319)
79 PRK14957 DNA polymerase III su 98.2 2.3E-05 4.9E-10 93.8 14.9 184 188-394 16-223 (546)
80 PRK08727 hypothetical protein; 98.2 1.5E-05 3.3E-10 86.2 12.3 147 216-389 42-201 (233)
81 PRK09112 DNA polymerase III su 98.2 2.6E-05 5.7E-10 88.9 14.6 196 187-392 22-240 (351)
82 KOG1259 Nischarin, modulator o 98.2 7.8E-07 1.7E-11 91.8 2.0 105 586-694 298-404 (490)
83 PRK14962 DNA polymerase III su 98.1 2.6E-05 5.7E-10 92.5 15.0 182 188-396 14-223 (472)
84 COG4886 Leucine-rich repeat (L 98.1 2.3E-06 5E-11 102.4 5.8 180 1179-1377 112-294 (394)
85 TIGR00678 holB DNA polymerase 98.1 5.4E-05 1.2E-09 79.5 15.1 90 293-387 95-186 (188)
86 PRK07471 DNA polymerase III su 98.1 1.4E-05 3E-10 91.7 11.3 194 187-392 18-238 (365)
87 KOG1259 Nischarin, modulator o 98.1 5.2E-07 1.1E-11 93.1 -0.2 100 593-696 282-381 (490)
88 PRK08691 DNA polymerase III su 98.1 1.3E-05 2.9E-10 96.5 11.4 190 188-389 16-217 (709)
89 PRK09087 hypothetical protein; 98.1 4.3E-05 9.4E-10 81.8 14.1 140 215-392 44-195 (226)
90 PRK08903 DnaA regulatory inact 98.1 2.7E-05 5.7E-10 84.8 12.7 171 191-396 22-203 (227)
91 TIGR02397 dnaX_nterm DNA polym 98.1 6.9E-05 1.5E-09 88.2 16.9 181 188-392 14-218 (355)
92 PRK05896 DNA polymerase III su 98.1 3.7E-05 8.1E-10 91.8 14.3 195 188-394 16-223 (605)
93 PRK07994 DNA polymerase III su 98.1 3.4E-05 7.4E-10 93.7 14.2 192 188-391 16-219 (647)
94 PRK13341 recombination factor 98.1 1.6E-05 3.5E-10 98.8 11.7 166 188-386 28-211 (725)
95 PRK07940 DNA polymerase III su 98.1 6.2E-05 1.4E-09 87.1 15.7 193 188-392 5-213 (394)
96 PRK14964 DNA polymerase III su 98.1 4.5E-05 9.8E-10 89.9 14.6 175 188-388 13-213 (491)
97 PRK08084 DNA replication initi 98.1 3.5E-05 7.7E-10 83.5 12.5 152 215-393 45-210 (235)
98 PRK14951 DNA polymerase III su 98.0 6.1E-05 1.3E-09 91.5 15.3 193 188-389 16-222 (618)
99 TIGR01242 26Sp45 26S proteasom 98.0 2.3E-05 5E-10 91.6 11.5 181 186-386 120-328 (364)
100 PRK14955 DNA polymerase III su 98.0 4.3E-05 9.2E-10 90.0 13.5 199 188-392 16-229 (397)
101 PRK14958 DNA polymerase III su 98.0 5.5E-05 1.2E-09 90.9 14.4 176 188-389 16-217 (509)
102 cd01128 rho_factor Transcripti 98.0 1.1E-05 2.3E-10 87.1 7.5 90 214-304 15-113 (249)
103 PRK05642 DNA replication initi 98.0 5.1E-05 1.1E-09 82.1 12.4 153 215-394 45-210 (234)
104 PRK09376 rho transcription ter 98.0 1.6E-05 3.6E-10 88.6 8.0 90 214-304 168-266 (416)
105 PF00308 Bac_DnaA: Bacterial d 98.0 6.3E-05 1.4E-09 80.3 12.3 185 190-393 11-209 (219)
106 PF12799 LRR_4: Leucine Rich r 98.0 6.4E-06 1.4E-10 61.4 3.2 40 595-634 1-40 (44)
107 PRK09111 DNA polymerase III su 98.0 9.3E-05 2E-09 90.2 14.8 195 188-391 24-232 (598)
108 PF14516 AAA_35: AAA-like doma 97.9 0.00098 2.1E-08 76.4 22.0 200 188-399 11-246 (331)
109 PRK14087 dnaA chromosomal repl 97.9 0.00011 2.4E-09 87.3 14.5 166 215-394 141-321 (450)
110 PRK14969 DNA polymerase III su 97.9 0.00011 2.3E-09 89.2 14.7 180 188-393 16-222 (527)
111 KOG2227 Pre-initiation complex 97.9 0.00018 3.9E-09 80.4 14.9 208 186-395 148-375 (529)
112 PRK14954 DNA polymerase III su 97.9 0.00015 3.3E-09 88.5 15.2 200 188-392 16-229 (620)
113 PRK07133 DNA polymerase III su 97.9 0.00023 5E-09 87.1 16.1 192 188-393 18-221 (725)
114 PRK14959 DNA polymerase III su 97.9 0.00017 3.6E-09 87.0 14.6 196 188-396 16-225 (624)
115 PRK11331 5-methylcytosine-spec 97.8 8E-05 1.7E-09 85.4 11.0 110 188-309 175-287 (459)
116 KOG0989 Replication factor C, 97.8 6.7E-05 1.5E-09 79.1 9.3 189 187-392 35-231 (346)
117 PRK14952 DNA polymerase III su 97.8 0.00028 6E-09 85.6 15.8 197 188-396 13-224 (584)
118 PRK14950 DNA polymerase III su 97.8 0.00031 6.7E-09 87.0 16.4 193 188-392 16-221 (585)
119 PF05621 TniB: Bacterial TniB 97.8 0.00046 9.9E-09 74.7 15.4 193 195-390 44-259 (302)
120 PRK08451 DNA polymerase III su 97.8 0.00039 8.4E-09 82.9 16.2 193 188-392 14-218 (535)
121 KOG1909 Ran GTPase-activating 97.8 2.1E-06 4.6E-11 91.6 -2.4 84 1159-1243 30-132 (382)
122 PRK14970 DNA polymerase III su 97.8 0.00033 7.1E-09 82.4 15.6 174 188-387 17-204 (367)
123 KOG2120 SCF ubiquitin ligase, 97.8 8.1E-07 1.8E-11 91.9 -5.4 62 1179-1242 309-374 (419)
124 PRK14953 DNA polymerase III su 97.8 0.00046 1E-08 82.6 16.7 179 188-392 16-220 (486)
125 PRK03992 proteasome-activating 97.8 0.00011 2.4E-09 86.1 11.0 179 187-385 130-336 (389)
126 PRK07764 DNA polymerase III su 97.8 0.00032 6.9E-09 88.7 15.6 189 188-388 15-217 (824)
127 TIGR00767 rho transcription te 97.7 0.00012 2.6E-09 82.5 10.0 91 214-305 167-266 (415)
128 PRK06305 DNA polymerase III su 97.7 0.00044 9.6E-09 82.2 15.3 179 188-393 17-224 (451)
129 PRK06620 hypothetical protein; 97.7 0.0004 8.8E-09 73.7 13.3 135 216-390 45-187 (214)
130 KOG1909 Ran GTPase-activating 97.7 1.3E-05 2.7E-10 85.9 1.9 251 589-897 24-310 (382)
131 TIGR02881 spore_V_K stage V sp 97.7 0.0002 4.4E-09 79.4 11.0 160 189-364 7-191 (261)
132 PRK14971 DNA polymerase III su 97.7 0.00064 1.4E-08 83.8 16.2 174 188-388 17-218 (614)
133 KOG2120 SCF ubiquitin ligase, 97.7 4.6E-06 9.9E-11 86.5 -2.0 63 1121-1196 311-376 (419)
134 PRK06647 DNA polymerase III su 97.7 0.00084 1.8E-08 81.7 16.6 190 188-389 16-217 (563)
135 KOG4579 Leucine-rich repeat (L 97.7 1.2E-05 2.6E-10 73.7 0.5 97 586-684 44-141 (177)
136 TIGR03345 VI_ClpV1 type VI sec 97.7 0.0003 6.4E-09 90.3 13.3 178 188-386 187-390 (852)
137 TIGR00362 DnaA chromosomal rep 97.7 0.0006 1.3E-08 81.2 15.0 160 215-390 136-308 (405)
138 COG2255 RuvB Holliday junction 97.6 0.0013 2.7E-08 69.0 14.7 280 188-501 26-314 (332)
139 PRK14948 DNA polymerase III su 97.6 0.001 2.2E-08 82.1 16.6 194 188-391 16-221 (620)
140 PHA02544 44 clamp loader, smal 97.6 0.00027 5.9E-09 81.5 11.2 147 188-362 21-171 (316)
141 KOG2543 Origin recognition com 97.6 0.0021 4.5E-08 70.3 16.4 168 187-364 5-193 (438)
142 PF12799 LRR_4: Leucine Rich r 97.6 5.5E-05 1.2E-09 56.4 3.0 34 618-651 1-34 (44)
143 KOG0531 Protein phosphatase 1, 97.6 1.5E-05 3.3E-10 95.2 -0.1 105 588-696 88-193 (414)
144 PRK14088 dnaA chromosomal repl 97.6 0.0011 2.4E-08 78.9 15.5 158 215-389 130-302 (440)
145 PRK14965 DNA polymerase III su 97.5 0.00086 1.9E-08 82.6 14.4 194 188-394 16-223 (576)
146 TIGR02639 ClpA ATP-dependent C 97.5 0.0004 8.8E-09 88.7 12.0 155 188-363 182-357 (731)
147 PRK05563 DNA polymerase III su 97.5 0.0019 4.1E-08 79.1 16.9 190 188-389 16-217 (559)
148 PRK00149 dnaA chromosomal repl 97.5 0.00083 1.8E-08 81.0 13.6 159 214-390 147-320 (450)
149 PRK07399 DNA polymerase III su 97.5 0.0024 5.1E-08 72.1 16.0 196 188-392 4-221 (314)
150 KOG4579 Leucine-rich repeat (L 97.5 1.3E-05 2.9E-10 73.3 -1.8 99 595-695 27-129 (177)
151 PRK12422 chromosomal replicati 97.5 0.003 6.6E-08 74.9 17.0 153 215-385 141-306 (445)
152 CHL00095 clpC Clp protease ATP 97.4 0.00069 1.5E-08 87.7 12.5 155 188-362 179-352 (821)
153 PRK05707 DNA polymerase III su 97.4 0.0023 4.9E-08 72.6 15.1 168 214-392 21-203 (328)
154 PRK14086 dnaA chromosomal repl 97.4 0.0028 6.1E-08 76.2 16.1 158 216-389 315-485 (617)
155 KOG2004 Mitochondrial ATP-depe 97.4 0.0033 7.2E-08 74.1 15.7 108 186-305 409-516 (906)
156 KOG1859 Leucine-rich repeat pr 97.4 7.1E-06 1.5E-10 95.3 -6.3 123 1161-1289 166-292 (1096)
157 TIGR02880 cbbX_cfxQ probable R 97.4 0.0018 3.9E-08 72.3 12.8 132 217-364 60-208 (284)
158 CHL00181 cbbX CbbX; Provisiona 97.3 0.0035 7.6E-08 69.9 14.7 133 216-364 60-209 (287)
159 PRK11034 clpA ATP-dependent Cl 97.3 0.0011 2.4E-08 83.3 11.7 156 188-363 186-361 (758)
160 KOG0531 Protein phosphatase 1, 97.3 5.8E-05 1.3E-09 90.2 0.4 54 1233-1287 234-288 (414)
161 PF00004 AAA: ATPase family as 97.3 0.0004 8.6E-09 68.3 6.1 69 218-306 1-70 (132)
162 COG3267 ExeA Type II secretory 97.3 0.0066 1.4E-07 63.2 14.4 176 214-394 50-247 (269)
163 PRK08769 DNA polymerase III su 97.3 0.0082 1.8E-07 67.4 16.5 187 195-393 11-209 (319)
164 PF05673 DUF815: Protein of un 97.3 0.00055 1.2E-08 71.5 6.6 127 184-337 23-154 (249)
165 PTZ00361 26 proteosome regulat 97.2 0.00056 1.2E-08 80.0 7.1 157 188-364 183-367 (438)
166 PTZ00454 26S protease regulato 97.2 0.0029 6.3E-08 73.7 13.0 179 187-385 144-350 (398)
167 TIGR00763 lon ATP-dependent pr 97.2 0.0098 2.1E-07 76.7 18.3 165 187-363 319-504 (775)
168 smart00382 AAA ATPases associa 97.2 0.0017 3.8E-08 64.9 9.3 88 216-307 3-91 (148)
169 TIGR03346 chaperone_ClpB ATP-d 97.1 0.0029 6.3E-08 82.3 13.2 156 188-363 173-348 (852)
170 CHL00176 ftsH cell division pr 97.1 0.0044 9.6E-08 76.5 13.8 177 188-384 183-386 (638)
171 TIGR00602 rad24 checkpoint pro 97.1 0.0027 5.8E-08 77.7 11.7 51 187-238 83-133 (637)
172 KOG1859 Leucine-rich repeat pr 97.1 2.7E-05 5.8E-10 90.7 -5.2 79 594-676 186-265 (1096)
173 PRK10536 hypothetical protein; 97.1 0.0025 5.5E-08 67.6 9.7 134 189-334 56-213 (262)
174 PRK08058 DNA polymerase III su 97.1 0.0097 2.1E-07 68.2 15.2 162 190-363 7-181 (329)
175 KOG0741 AAA+-type ATPase [Post 97.1 0.011 2.5E-07 67.1 14.8 150 212-382 535-704 (744)
176 PRK10787 DNA-binding ATP-depen 97.1 0.003 6.5E-08 80.2 11.9 167 186-364 320-506 (784)
177 PRK10865 protein disaggregatio 97.0 0.0038 8.2E-08 80.7 12.9 45 188-238 178-222 (857)
178 PRK08116 hypothetical protein; 97.0 0.002 4.3E-08 71.1 8.8 103 216-333 115-220 (268)
179 COG1222 RPT1 ATP-dependent 26S 97.0 0.0072 1.6E-07 65.8 12.5 178 188-386 151-357 (406)
180 PRK06090 DNA polymerase III su 97.0 0.023 4.9E-07 63.8 16.7 176 196-392 11-201 (319)
181 TIGR01241 FtsH_fam ATP-depende 97.0 0.0073 1.6E-07 73.8 13.9 186 187-392 54-267 (495)
182 KOG3665 ZYG-1-like serine/thre 97.0 0.00049 1.1E-08 85.6 3.6 128 541-676 123-261 (699)
183 PRK06871 DNA polymerase III su 97.0 0.022 4.8E-07 64.1 16.3 175 197-389 11-200 (325)
184 TIGR03689 pup_AAA proteasome A 96.9 0.011 2.4E-07 70.4 14.3 168 188-365 182-379 (512)
185 KOG2982 Uncharacterized conser 96.9 0.00053 1.1E-08 71.7 2.3 85 1158-1242 70-157 (418)
186 TIGR02640 gas_vesic_GvpN gas v 96.9 0.021 4.6E-07 63.2 15.0 55 195-262 9-63 (262)
187 COG0593 DnaA ATPase involved i 96.9 0.014 3E-07 66.9 13.6 160 187-366 87-259 (408)
188 PF04665 Pox_A32: Poxvirus A32 96.8 0.0019 4.2E-08 68.3 6.3 36 216-253 14-49 (241)
189 PRK07993 DNA polymerase III su 96.8 0.0097 2.1E-07 67.8 12.0 179 195-390 9-202 (334)
190 PF13177 DNA_pol3_delta2: DNA 96.7 0.012 2.7E-07 59.5 10.9 136 192-351 1-161 (162)
191 KOG0733 Nuclear AAA ATPase (VC 96.7 0.019 4.1E-07 66.7 12.9 99 187-305 189-293 (802)
192 COG0466 Lon ATP-dependent Lon 96.7 0.005 1.1E-07 73.2 8.6 168 185-364 320-508 (782)
193 COG1373 Predicted ATPase (AAA+ 96.7 0.028 6.1E-07 66.0 14.9 224 217-496 39-268 (398)
194 TIGR02639 ClpA ATP-dependent C 96.7 0.013 2.9E-07 75.0 13.2 120 187-319 453-578 (731)
195 PRK04296 thymidine kinase; Pro 96.7 0.0034 7.4E-08 65.5 6.6 113 216-335 3-117 (190)
196 COG2812 DnaX DNA polymerase II 96.6 0.0052 1.1E-07 72.5 8.4 186 189-386 17-214 (515)
197 PRK10865 protein disaggregatio 96.6 0.014 3E-07 75.7 13.0 139 187-333 567-720 (857)
198 COG0542 clpA ATP-binding subun 96.6 0.0051 1.1E-07 75.5 8.5 126 187-320 490-619 (786)
199 KOG0991 Replication factor C, 96.6 0.021 4.6E-07 57.9 11.2 44 188-237 27-70 (333)
200 PRK08118 topology modulation p 96.6 0.0011 2.5E-08 67.3 2.5 34 217-250 3-37 (167)
201 KOG1947 Leucine rich repeat pr 96.6 0.00043 9.2E-09 86.0 -1.0 111 992-1102 187-308 (482)
202 TIGR03345 VI_ClpV1 type VI sec 96.6 0.0075 1.6E-07 77.7 10.1 138 187-333 565-718 (852)
203 PRK11889 flhF flagellar biosyn 96.5 0.017 3.8E-07 65.1 11.3 90 214-305 240-331 (436)
204 PRK08181 transposase; Validate 96.5 0.0079 1.7E-07 65.8 8.5 101 216-334 107-209 (269)
205 KOG1514 Origin recognition com 96.5 0.11 2.4E-06 62.0 18.0 199 187-393 395-622 (767)
206 PRK06964 DNA polymerase III su 96.5 0.053 1.1E-06 61.6 15.1 93 293-392 131-225 (342)
207 KOG1947 Leucine rich repeat pr 96.5 0.00034 7.4E-09 86.8 -2.7 118 956-1080 184-309 (482)
208 TIGR03346 chaperone_ClpB ATP-d 96.5 0.012 2.5E-07 76.8 11.1 138 187-333 564-717 (852)
209 PF02562 PhoH: PhoH-like prote 96.5 0.0031 6.7E-08 65.3 4.6 131 192-334 4-156 (205)
210 PF10443 RNA12: RNA12 protein; 96.5 0.088 1.9E-06 60.1 16.3 202 193-410 1-297 (431)
211 smart00763 AAA_PrkA PrkA AAA d 96.5 0.0026 5.7E-08 71.3 4.3 51 189-239 52-102 (361)
212 PTZ00494 tuzin-like protein; P 96.4 0.87 1.9E-05 51.7 23.1 168 184-363 367-543 (664)
213 COG1223 Predicted ATPase (AAA+ 96.4 0.027 5.9E-07 58.2 10.5 179 187-385 120-318 (368)
214 KOG2982 Uncharacterized conser 96.4 0.0022 4.7E-08 67.3 2.8 190 1178-1377 66-266 (418)
215 COG2607 Predicted ATPase (AAA+ 96.4 0.043 9.3E-07 56.4 11.7 107 187-320 59-166 (287)
216 PRK06921 hypothetical protein; 96.3 0.012 2.5E-07 65.0 8.6 37 215-253 117-154 (266)
217 PRK08939 primosomal protein Dn 96.3 0.011 2.5E-07 66.3 8.7 122 192-333 135-260 (306)
218 PRK12608 transcription termina 96.3 0.019 4E-07 64.9 10.1 102 196-303 119-229 (380)
219 TIGR02237 recomb_radB DNA repa 96.3 0.012 2.5E-07 63.2 8.4 49 213-264 10-58 (209)
220 PRK08699 DNA polymerase III su 96.3 0.0049 1.1E-07 69.8 5.7 167 214-388 20-202 (325)
221 KOG1644 U2-associated snRNP A' 96.3 0.0049 1.1E-07 61.4 4.6 104 593-699 40-150 (233)
222 PF01695 IstB_IS21: IstB-like 96.3 0.0041 8.9E-08 63.8 4.4 100 215-333 47-149 (178)
223 PRK06526 transposase; Provisio 96.3 0.0054 1.2E-07 66.8 5.4 100 216-334 99-201 (254)
224 TIGR01243 CDC48 AAA family ATP 96.3 0.014 3.1E-07 75.1 10.1 179 188-386 178-381 (733)
225 PRK07952 DNA replication prote 96.3 0.014 3E-07 62.9 8.4 103 215-333 99-204 (244)
226 COG0470 HolB ATPase involved i 96.2 0.019 4.2E-07 66.6 10.4 147 189-355 2-172 (325)
227 PRK07261 topology modulation p 96.2 0.0097 2.1E-07 60.9 6.8 66 217-305 2-68 (171)
228 CHL00095 clpC Clp protease ATP 96.2 0.015 3.2E-07 75.5 10.2 137 187-333 508-661 (821)
229 TIGR01243 CDC48 AAA family ATP 96.2 0.029 6.3E-07 72.3 12.7 179 188-386 453-657 (733)
230 KOG3665 ZYG-1-like serine/thre 96.2 0.0022 4.8E-08 79.9 2.4 76 618-695 122-201 (699)
231 PRK09361 radB DNA repair and r 96.2 0.019 4.1E-07 62.3 9.4 46 213-261 21-66 (225)
232 PRK09183 transposase/IS protei 96.2 0.011 2.5E-07 64.8 7.5 23 216-238 103-125 (259)
233 COG5238 RNA1 Ran GTPase-activa 96.2 0.0021 4.5E-08 66.5 1.5 94 588-682 23-136 (388)
234 KOG0730 AAA+-type ATPase [Post 96.2 0.023 5E-07 67.1 10.0 178 188-385 434-636 (693)
235 PF00448 SRP54: SRP54-type pro 96.1 0.014 3.1E-07 60.8 7.6 89 215-305 1-94 (196)
236 TIGR02902 spore_lonB ATP-depen 96.1 0.022 4.8E-07 69.7 10.2 43 189-237 66-108 (531)
237 KOG2228 Origin recognition com 96.1 0.034 7.3E-07 60.1 10.0 171 189-364 25-219 (408)
238 cd01393 recA_like RecA is a b 96.1 0.032 6.9E-07 60.7 10.3 91 213-304 17-124 (226)
239 PRK12377 putative replication 96.1 0.012 2.6E-07 63.6 6.6 101 216-333 102-205 (248)
240 cd01123 Rad51_DMC1_radA Rad51_ 96.0 0.025 5.5E-07 61.9 9.4 50 213-262 17-70 (235)
241 KOG0731 AAA+-type ATPase conta 96.0 0.051 1.1E-06 66.5 12.5 182 187-389 310-521 (774)
242 TIGR03499 FlhF flagellar biosy 96.0 0.022 4.7E-07 63.7 8.8 87 214-303 193-281 (282)
243 cd00983 recA RecA is a bacter 96.0 0.015 3.3E-07 65.0 7.4 84 213-303 53-142 (325)
244 PF00158 Sigma54_activat: Sigm 96.0 0.024 5.3E-07 57.5 8.2 130 190-333 1-143 (168)
245 TIGR02012 tigrfam_recA protein 96.0 0.017 3.7E-07 64.6 7.5 86 212-304 52-143 (321)
246 cd00561 CobA_CobO_BtuR ATP:cor 95.9 0.02 4.4E-07 56.6 7.1 116 216-334 3-138 (159)
247 PRK04132 replication factor C 95.9 0.1 2.2E-06 66.1 14.9 151 223-389 574-728 (846)
248 PLN00020 ribulose bisphosphate 95.9 0.05 1.1E-06 60.7 10.6 26 213-238 146-171 (413)
249 PRK05541 adenylylsulfate kinas 95.9 0.013 2.8E-07 60.7 6.0 36 214-251 6-41 (176)
250 KOG1969 DNA replication checkp 95.9 0.021 4.5E-07 68.0 7.9 78 212-307 323-400 (877)
251 cd01394 radB RadB. The archaea 95.9 0.024 5.2E-07 61.2 8.0 44 213-258 17-60 (218)
252 PRK09354 recA recombinase A; P 95.9 0.023 4.9E-07 64.1 7.9 86 212-304 57-148 (349)
253 cd01120 RecA-like_NTPases RecA 95.9 0.026 5.6E-07 57.8 8.0 40 217-258 1-40 (165)
254 KOG2123 Uncharacterized conser 95.9 0.00091 2E-08 69.4 -2.8 102 595-699 19-127 (388)
255 KOG2739 Leucine-rich acidic nu 95.8 0.0042 9.1E-08 64.9 1.9 104 593-700 41-154 (260)
256 CHL00195 ycf46 Ycf46; Provisio 95.8 0.036 7.7E-07 66.3 9.8 178 188-385 228-428 (489)
257 PF07728 AAA_5: AAA domain (dy 95.8 0.0037 8.1E-08 61.8 1.4 85 218-315 2-86 (139)
258 PRK06696 uridine kinase; Valid 95.8 0.011 2.4E-07 63.8 5.0 44 192-238 2-45 (223)
259 PF00560 LRR_1: Leucine Rich R 95.8 0.0041 9E-08 38.4 1.0 19 620-638 2-20 (22)
260 PRK11034 clpA ATP-dependent Cl 95.7 0.036 7.8E-07 70.1 9.9 121 187-319 457-582 (758)
261 PF13207 AAA_17: AAA domain; P 95.7 0.0075 1.6E-07 58.0 3.1 21 217-237 1-21 (121)
262 KOG2035 Replication factor C, 95.7 0.022 4.8E-07 59.6 6.4 204 190-411 15-257 (351)
263 KOG1051 Chaperone HSP104 and r 95.7 0.043 9.2E-07 68.8 10.0 120 188-318 562-684 (898)
264 PRK14722 flhF flagellar biosyn 95.6 0.034 7.4E-07 63.6 8.3 89 215-305 137-226 (374)
265 PRK06835 DNA replication prote 95.6 0.015 3.2E-07 65.9 5.2 102 216-333 184-288 (329)
266 PHA00729 NTP-binding motif con 95.6 0.028 6E-07 59.0 6.7 25 214-238 16-40 (226)
267 PHA02244 ATPase-like protein 95.6 0.062 1.3E-06 60.5 9.8 44 187-238 95-142 (383)
268 TIGR02238 recomb_DMC1 meiotic 95.6 0.05 1.1E-06 61.4 9.2 59 213-272 94-156 (313)
269 KOG0734 AAA+-type ATPase conta 95.5 0.08 1.7E-06 60.7 10.5 53 188-240 304-362 (752)
270 COG1875 NYN ribonuclease and A 95.5 0.038 8.3E-07 60.4 7.7 133 192-334 228-388 (436)
271 cd00544 CobU Adenosylcobinamid 95.5 0.014 2.9E-07 59.2 4.2 78 218-303 2-82 (169)
272 KOG0733 Nuclear AAA ATPase (VC 95.5 0.11 2.4E-06 60.7 11.6 132 214-365 544-693 (802)
273 PF14532 Sigma54_activ_2: Sigm 95.5 0.01 2.2E-07 58.5 3.2 108 191-334 1-110 (138)
274 COG0542 clpA ATP-binding subun 95.5 0.12 2.6E-06 64.1 12.7 154 188-362 170-344 (786)
275 KOG0744 AAA+-type ATPase [Post 95.5 0.037 8.1E-07 59.2 7.3 79 215-303 177-259 (423)
276 PF08423 Rad51: Rad51; InterP 95.5 0.04 8.7E-07 60.4 8.0 89 214-303 37-142 (256)
277 PRK05703 flhF flagellar biosyn 95.4 0.093 2E-06 62.0 11.1 88 215-304 221-309 (424)
278 PRK00771 signal recognition pa 95.4 0.1 2.2E-06 61.5 11.3 88 214-304 94-185 (437)
279 PLN03187 meiotic recombination 95.3 0.093 2E-06 59.6 10.4 59 213-272 124-186 (344)
280 COG0468 RecA RecA/RadA recombi 95.3 0.067 1.5E-06 58.4 8.9 91 211-303 56-150 (279)
281 PRK12726 flagellar biosynthesi 95.3 0.14 3E-06 58.0 11.3 90 214-305 205-296 (407)
282 PRK14974 cell division protein 95.3 0.098 2.1E-06 59.3 10.4 91 214-306 139-234 (336)
283 PRK15455 PrkA family serine pr 95.3 0.013 2.7E-07 69.2 3.3 49 189-237 77-125 (644)
284 COG1419 FlhF Flagellar GTP-bin 95.2 0.054 1.2E-06 61.2 8.0 89 214-305 202-292 (407)
285 PRK12727 flagellar biosynthesi 95.2 0.074 1.6E-06 62.8 9.4 90 214-305 349-439 (559)
286 PRK08233 hypothetical protein; 95.2 0.05 1.1E-06 56.8 7.5 24 215-238 3-26 (182)
287 KOG1644 U2-associated snRNP A' 95.2 0.019 4.1E-07 57.3 3.9 95 597-695 21-119 (233)
288 PRK12724 flagellar biosynthesi 95.2 0.046 9.9E-07 62.9 7.3 86 214-303 222-308 (432)
289 TIGR02239 recomb_RAD51 DNA rep 95.2 0.096 2.1E-06 59.3 9.9 58 213-271 94-155 (316)
290 PF00560 LRR_1: Leucine Rich R 95.1 0.012 2.5E-07 36.4 1.4 22 596-617 1-22 (22)
291 COG0572 Udk Uridine kinase [Nu 95.1 0.047 1E-06 56.5 6.6 78 213-295 6-85 (218)
292 COG4608 AppF ABC-type oligopep 95.1 0.078 1.7E-06 56.6 8.4 123 215-341 39-177 (268)
293 PRK05800 cobU adenosylcobinami 95.1 0.02 4.3E-07 58.2 3.9 80 217-303 3-85 (170)
294 TIGR00959 ffh signal recogniti 95.1 0.098 2.1E-06 61.4 10.1 91 214-305 98-193 (428)
295 PRK12723 flagellar biosynthesi 95.1 0.089 1.9E-06 60.9 9.6 91 214-306 173-266 (388)
296 PRK07132 DNA polymerase III su 95.1 0.85 1.8E-05 51.0 17.0 152 215-391 18-184 (299)
297 cd01133 F1-ATPase_beta F1 ATP 95.1 0.088 1.9E-06 57.2 8.9 87 215-303 69-172 (274)
298 cd03214 ABC_Iron-Siderophores_ 95.1 0.15 3.2E-06 52.9 10.5 120 215-337 25-161 (180)
299 PRK10867 signal recognition pa 95.0 0.068 1.5E-06 62.7 8.4 89 214-304 99-193 (433)
300 PF07693 KAP_NTPase: KAP famil 95.0 0.23 5E-06 57.6 13.0 44 193-239 1-44 (325)
301 cd03247 ABCC_cytochrome_bd The 95.0 0.083 1.8E-06 54.8 8.1 118 215-338 28-161 (178)
302 PRK06067 flagellar accessory p 94.9 0.051 1.1E-06 59.3 6.8 87 213-304 23-130 (234)
303 PF13604 AAA_30: AAA domain; P 94.9 0.016 3.5E-07 60.8 2.7 102 216-332 19-129 (196)
304 cd03228 ABCC_MRP_Like The MRP 94.8 0.12 2.7E-06 53.0 9.0 120 215-338 28-159 (171)
305 TIGR00064 ftsY signal recognit 94.8 0.096 2.1E-06 57.9 8.6 89 214-305 71-165 (272)
306 KOG0735 AAA+-type ATPase [Post 94.8 0.063 1.4E-06 63.8 7.3 73 214-304 430-504 (952)
307 PRK05439 pantothenate kinase; 94.8 0.14 3E-06 57.2 9.6 81 212-295 83-166 (311)
308 KOG0473 Leucine-rich repeat pr 94.8 0.0025 5.4E-08 64.4 -3.5 87 590-677 37-123 (326)
309 KOG2123 Uncharacterized conser 94.8 0.0048 1E-07 64.2 -1.6 81 590-671 35-123 (388)
310 COG1618 Predicted nucleotide k 94.8 0.025 5.4E-07 54.4 3.2 24 216-239 6-29 (179)
311 COG1484 DnaC DNA replication p 94.8 0.047 1E-06 59.7 5.9 82 214-312 104-185 (254)
312 COG2884 FtsE Predicted ATPase 94.8 0.23 4.9E-06 49.5 9.8 60 281-341 142-204 (223)
313 KOG0728 26S proteasome regulat 94.7 0.34 7.5E-06 49.8 11.3 152 189-364 147-331 (404)
314 cd03238 ABC_UvrA The excision 94.7 0.14 3.1E-06 52.3 9.0 114 215-338 21-153 (176)
315 PLN03186 DNA repair protein RA 94.7 0.18 4E-06 57.4 10.5 58 213-271 121-182 (342)
316 TIGR01650 PD_CobS cobaltochela 94.7 0.17 3.7E-06 56.5 9.9 59 189-260 46-104 (327)
317 cd03115 SRP The signal recogni 94.7 0.11 2.4E-06 53.7 8.1 87 217-305 2-93 (173)
318 cd01125 repA Hexameric Replica 94.7 0.14 3E-06 56.1 9.3 21 217-237 3-23 (239)
319 cd01131 PilT Pilus retraction 94.6 0.039 8.4E-07 58.2 4.7 110 216-336 2-111 (198)
320 PRK13531 regulatory ATPase Rav 94.6 0.036 7.7E-07 64.8 4.8 42 189-238 21-62 (498)
321 cd03216 ABC_Carb_Monos_I This 94.6 0.1 2.2E-06 53.1 7.6 116 215-337 26-145 (163)
322 COG1121 ZnuC ABC-type Mn/Zn tr 94.6 0.13 2.9E-06 54.8 8.5 120 216-337 31-202 (254)
323 COG1102 Cmk Cytidylate kinase 94.6 0.068 1.5E-06 51.5 5.6 44 217-273 2-45 (179)
324 PRK09270 nucleoside triphospha 94.6 0.13 2.9E-06 55.7 9.0 26 213-238 31-56 (229)
325 PF00154 RecA: recA bacterial 94.6 0.056 1.2E-06 60.2 5.9 86 212-304 50-141 (322)
326 PRK10733 hflB ATP-dependent me 94.6 0.13 2.8E-06 64.7 9.9 149 216-384 186-355 (644)
327 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.5 0.22 4.7E-06 49.4 9.5 105 215-338 26-131 (144)
328 TIGR00554 panK_bact pantothena 94.5 0.15 3.2E-06 56.6 9.0 79 213-294 60-141 (290)
329 PRK07667 uridine kinase; Provi 94.5 0.049 1.1E-06 57.2 5.2 37 197-237 3-39 (193)
330 PF00485 PRK: Phosphoribulokin 94.5 0.11 2.4E-06 54.6 7.9 80 217-298 1-87 (194)
331 PRK11608 pspF phage shock prot 94.5 0.1 2.3E-06 59.7 8.1 133 189-333 7-150 (326)
332 TIGR02236 recomb_radA DNA repa 94.5 0.2 4.3E-06 57.3 10.5 57 213-270 93-153 (310)
333 PRK10820 DNA-binding transcrip 94.4 0.36 7.8E-06 59.3 13.1 63 188-256 204-266 (520)
334 PF12775 AAA_7: P-loop contain 94.4 0.042 9.1E-07 60.8 4.5 96 197-311 22-117 (272)
335 cd02025 PanK Pantothenate kina 94.4 0.12 2.7E-06 55.2 8.0 75 217-292 1-76 (220)
336 cd03223 ABCD_peroxisomal_ALDP 94.4 0.3 6.6E-06 49.8 10.5 117 215-337 27-151 (166)
337 COG0464 SpoVK ATPases of the A 94.4 0.21 4.5E-06 61.6 11.0 152 213-384 274-445 (494)
338 PF07724 AAA_2: AAA domain (Cd 94.4 0.02 4.4E-07 58.2 1.8 42 215-258 3-45 (171)
339 cd01122 GP4d_helicase GP4d_hel 94.3 0.27 5.9E-06 55.1 11.1 52 215-269 30-81 (271)
340 KOG0743 AAA+-type ATPase [Post 94.3 0.59 1.3E-05 53.5 13.2 74 324-399 337-417 (457)
341 PRK08533 flagellar accessory p 94.3 0.19 4.1E-06 54.3 9.2 49 214-266 23-71 (230)
342 PRK04301 radA DNA repair and r 94.3 0.17 3.7E-06 57.9 9.4 58 213-271 100-161 (317)
343 PRK13695 putative NTPase; Prov 94.3 0.049 1.1E-06 56.3 4.4 22 217-238 2-23 (174)
344 PTZ00301 uridine kinase; Provi 94.3 0.08 1.7E-06 55.8 6.0 23 215-237 3-25 (210)
345 cd03230 ABC_DR_subfamily_A Thi 94.3 0.15 3.2E-06 52.6 7.9 118 215-338 26-159 (173)
346 PRK15429 formate hydrogenlyase 94.2 0.17 3.8E-06 64.8 10.2 134 188-333 376-520 (686)
347 TIGR03877 thermo_KaiC_1 KaiC d 94.2 0.27 5.9E-06 53.6 10.3 49 213-265 19-67 (237)
348 COG0563 Adk Adenylate kinase a 94.1 0.064 1.4E-06 54.9 4.8 22 217-238 2-23 (178)
349 PTZ00035 Rad51 protein; Provis 94.1 0.37 7.9E-06 55.2 11.4 90 213-303 116-222 (337)
350 PTZ00088 adenylate kinase 1; P 94.0 0.058 1.3E-06 57.8 4.4 21 218-238 9-29 (229)
351 TIGR00390 hslU ATP-dependent p 94.0 0.13 2.7E-06 59.1 7.2 52 187-238 11-70 (441)
352 PRK14723 flhF flagellar biosyn 94.0 0.31 6.8E-06 60.8 11.1 88 215-304 185-273 (767)
353 TIGR00708 cobA cob(I)alamin ad 93.9 0.17 3.6E-06 50.9 7.2 117 216-334 6-140 (173)
354 PRK06731 flhF flagellar biosyn 93.9 0.35 7.5E-06 53.1 10.2 90 215-306 75-166 (270)
355 PRK06547 hypothetical protein; 93.9 0.078 1.7E-06 54.1 4.9 26 213-238 13-38 (172)
356 PF03308 ArgK: ArgK protein; 93.9 0.084 1.8E-06 55.9 5.1 64 196-263 14-77 (266)
357 cd01121 Sms Sms (bacterial rad 93.8 0.34 7.3E-06 56.1 10.5 82 214-303 81-167 (372)
358 COG5238 RNA1 Ran GTPase-activa 93.8 0.012 2.6E-07 61.1 -1.1 154 1159-1314 30-224 (388)
359 PF07726 AAA_3: ATPase family 93.8 0.034 7.3E-07 52.0 1.8 28 218-247 2-29 (131)
360 cd02019 NK Nucleoside/nucleoti 93.8 0.046 1E-06 45.9 2.6 22 217-238 1-22 (69)
361 KOG0727 26S proteasome regulat 93.8 0.38 8.2E-06 49.6 9.3 51 188-238 155-212 (408)
362 PF13238 AAA_18: AAA domain; P 93.7 0.045 9.7E-07 53.3 2.8 21 218-238 1-21 (129)
363 KOG0739 AAA+-type ATPase [Post 93.7 1.3 2.9E-05 47.2 13.4 176 189-386 134-335 (439)
364 TIGR03878 thermo_KaiC_2 KaiC d 93.7 0.18 3.8E-06 55.7 7.7 41 213-255 34-74 (259)
365 TIGR02974 phageshock_pspF psp 93.7 0.13 2.7E-06 59.0 6.8 45 190-238 1-45 (329)
366 COG1136 SalX ABC-type antimicr 93.7 0.46 9.9E-06 50.0 10.2 58 283-340 149-209 (226)
367 cd03246 ABCC_Protease_Secretio 93.7 0.2 4.4E-06 51.6 7.6 23 215-237 28-50 (173)
368 cd03222 ABC_RNaseL_inhibitor T 93.6 0.35 7.5E-06 49.6 9.1 23 215-237 25-47 (177)
369 PF01583 APS_kinase: Adenylyls 93.6 0.084 1.8E-06 52.1 4.3 36 215-252 2-37 (156)
370 cd03229 ABC_Class3 This class 93.6 0.21 4.5E-06 51.8 7.6 23 215-237 26-48 (178)
371 COG1126 GlnQ ABC-type polar am 93.5 0.4 8.7E-06 49.1 8.9 121 215-340 28-202 (240)
372 COG1428 Deoxynucleoside kinase 93.5 0.052 1.1E-06 55.3 2.7 25 215-239 4-28 (216)
373 COG4088 Predicted nucleotide k 93.5 0.21 4.6E-06 50.2 6.8 22 216-237 2-23 (261)
374 PRK06002 fliI flagellum-specif 93.4 0.34 7.3E-06 56.7 9.6 86 215-303 165-263 (450)
375 COG1066 Sms Predicted ATP-depe 93.4 0.35 7.6E-06 54.4 9.1 83 214-305 92-179 (456)
376 PRK06995 flhF flagellar biosyn 93.4 0.39 8.5E-06 57.0 10.2 89 214-304 255-344 (484)
377 PRK05480 uridine/cytidine kina 93.4 0.069 1.5E-06 57.1 3.7 25 214-238 5-29 (209)
378 PF00006 ATP-synt_ab: ATP synt 93.4 0.19 4.2E-06 53.0 6.9 82 216-303 16-114 (215)
379 TIGR01817 nifA Nif-specific re 93.4 0.25 5.4E-06 61.4 9.1 63 187-256 195-258 (534)
380 KOG3928 Mitochondrial ribosome 93.4 0.52 1.1E-05 52.9 10.3 53 344-396 404-460 (461)
381 COG1703 ArgK Putative periplas 93.3 0.11 2.3E-06 55.8 4.9 64 198-265 38-101 (323)
382 PRK14721 flhF flagellar biosyn 93.3 0.35 7.6E-06 56.5 9.5 89 214-304 190-279 (420)
383 KOG2739 Leucine-rich acidic nu 93.3 0.035 7.6E-07 58.2 1.3 75 615-692 40-116 (260)
384 PF05659 RPW8: Arabidopsis bro 93.3 1.3 2.8E-05 43.4 11.9 79 4-86 6-85 (147)
385 TIGR00235 udk uridine kinase. 93.3 0.071 1.5E-06 56.8 3.7 25 213-237 4-28 (207)
386 PRK05022 anaerobic nitric oxid 93.3 0.4 8.7E-06 58.9 10.6 64 187-256 186-249 (509)
387 PRK10463 hydrogenase nickel in 93.3 0.38 8.2E-06 52.8 9.1 87 213-305 102-195 (290)
388 PF13671 AAA_33: AAA domain; P 93.2 0.071 1.5E-06 53.0 3.2 21 217-237 1-21 (143)
389 PF08298 AAA_PrkA: PrkA AAA do 93.1 0.1 2.2E-06 58.1 4.6 51 187-237 60-110 (358)
390 TIGR00150 HI0065_YjeE ATPase, 93.1 0.13 2.7E-06 49.3 4.6 41 195-239 6-46 (133)
391 TIGR01425 SRP54_euk signal rec 93.1 0.29 6.3E-06 57.1 8.4 24 214-237 99-122 (429)
392 PRK06762 hypothetical protein; 93.1 0.076 1.6E-06 54.4 3.3 24 215-238 2-25 (166)
393 PRK04328 hypothetical protein; 93.1 0.27 5.8E-06 53.9 7.8 42 213-256 21-62 (249)
394 PRK09519 recA DNA recombinatio 93.1 0.26 5.6E-06 61.7 8.3 85 213-304 58-148 (790)
395 cd03215 ABC_Carb_Monos_II This 93.0 0.33 7.1E-06 50.5 8.1 24 215-238 26-49 (182)
396 PRK00889 adenylylsulfate kinas 93.0 0.21 4.6E-06 51.6 6.6 24 215-238 4-27 (175)
397 PRK10923 glnG nitrogen regulat 93.0 0.94 2E-05 55.6 13.4 46 189-238 139-184 (469)
398 PRK05201 hslU ATP-dependent pr 93.0 0.21 4.6E-06 57.3 6.9 52 187-238 14-73 (443)
399 PF08433 KTI12: Chromatin asso 92.9 0.14 3E-06 56.4 5.2 23 216-238 2-24 (270)
400 KOG0735 AAA+-type ATPase [Post 92.9 1.2 2.7E-05 53.4 13.0 97 189-305 668-771 (952)
401 TIGR03881 KaiC_arch_4 KaiC dom 92.9 0.45 9.8E-06 51.7 9.3 41 213-255 18-58 (229)
402 cd00267 ABC_ATPase ABC (ATP-bi 92.9 0.26 5.6E-06 49.9 6.8 116 216-339 26-145 (157)
403 PRK05973 replicative DNA helic 92.8 0.19 4.2E-06 53.7 5.9 49 214-266 63-111 (237)
404 PF10236 DAP3: Mitochondrial r 92.8 0.43 9.2E-06 54.1 9.1 45 345-389 258-306 (309)
405 TIGR02858 spore_III_AA stage I 92.8 0.51 1.1E-05 51.9 9.3 127 196-337 97-232 (270)
406 cd02028 UMPK_like Uridine mono 92.7 0.17 3.6E-06 52.3 5.2 22 217-238 1-22 (179)
407 KOG0736 Peroxisome assembly fa 92.7 1.1 2.4E-05 54.5 12.2 175 190-387 403-599 (953)
408 PRK10875 recD exonuclease V su 92.6 0.44 9.6E-06 58.9 9.6 127 194-332 155-300 (615)
409 PLN02348 phosphoribulokinase 92.6 0.51 1.1E-05 53.9 9.3 25 213-237 47-71 (395)
410 PRK10416 signal recognition pa 92.6 0.39 8.4E-06 54.4 8.4 25 214-238 113-137 (318)
411 PRK15453 phosphoribulokinase; 92.6 0.44 9.6E-06 51.7 8.3 77 214-292 4-88 (290)
412 PF13504 LRR_7: Leucine rich r 92.6 0.067 1.5E-06 30.5 1.2 15 619-633 2-16 (17)
413 cd03217 ABC_FeS_Assembly ABC-t 92.5 0.47 1E-05 50.2 8.5 24 215-238 26-49 (200)
414 PF13479 AAA_24: AAA domain 92.5 0.34 7.3E-06 51.8 7.5 72 216-303 4-77 (213)
415 cd02027 APSK Adenosine 5'-phos 92.5 0.24 5.3E-06 49.3 6.0 21 217-237 1-21 (149)
416 PF06309 Torsin: Torsin; Inte 92.5 0.17 3.6E-06 47.4 4.4 50 189-238 26-76 (127)
417 PRK08972 fliI flagellum-specif 92.5 0.47 1E-05 55.3 8.9 85 215-303 162-261 (444)
418 COG0396 sufC Cysteine desulfur 92.5 0.99 2.2E-05 46.8 10.1 60 284-345 152-215 (251)
419 cd03282 ABC_MSH4_euk MutS4 hom 92.5 0.19 4.2E-06 52.9 5.5 120 215-341 29-158 (204)
420 cd01135 V_A-ATPase_B V/A-type 92.5 0.61 1.3E-05 50.7 9.2 89 215-303 69-175 (276)
421 cd03281 ABC_MSH5_euk MutS5 hom 92.4 0.13 2.8E-06 54.8 4.1 23 215-237 29-51 (213)
422 cd02021 GntK Gluconate kinase 92.4 0.63 1.4E-05 46.6 9.0 22 217-238 1-22 (150)
423 PF00910 RNA_helicase: RNA hel 92.4 0.072 1.6E-06 49.6 1.9 21 218-238 1-21 (107)
424 PRK03839 putative kinase; Prov 92.4 0.096 2.1E-06 54.5 3.0 22 217-238 2-23 (180)
425 PRK06217 hypothetical protein; 92.4 0.2 4.3E-06 52.2 5.4 22 217-238 3-24 (183)
426 PF12061 DUF3542: Protein of u 92.3 0.54 1.2E-05 50.3 8.2 76 12-87 297-373 (402)
427 COG0714 MoxR-like ATPases [Gen 92.3 0.25 5.5E-06 57.0 6.6 65 188-265 24-88 (329)
428 COG0465 HflB ATP-dependent Zn 92.3 0.49 1.1E-05 57.1 9.1 181 186-387 148-356 (596)
429 PF13306 LRR_5: Leucine rich r 92.3 0.44 9.6E-06 46.2 7.5 79 1179-1262 8-88 (129)
430 PRK04040 adenylate kinase; Pro 92.3 0.11 2.4E-06 54.0 3.2 22 216-237 3-24 (188)
431 PF03969 AFG1_ATPase: AFG1-lik 92.3 0.42 9.2E-06 55.0 8.2 106 214-334 61-167 (362)
432 TIGR01360 aden_kin_iso1 adenyl 92.2 0.12 2.5E-06 54.4 3.5 24 214-237 2-25 (188)
433 PF13481 AAA_25: AAA domain; P 92.2 0.44 9.5E-06 50.2 7.9 41 216-256 33-81 (193)
434 PRK00625 shikimate kinase; Pro 92.2 0.1 2.2E-06 53.2 2.8 21 217-237 2-22 (173)
435 COG4618 ArpD ABC-type protease 92.2 0.77 1.7E-05 53.2 9.8 23 215-237 362-384 (580)
436 PRK05986 cob(I)alamin adenolsy 92.1 0.37 8.1E-06 49.2 6.6 118 215-334 22-158 (191)
437 TIGR01069 mutS2 MutS2 family p 92.0 0.11 2.4E-06 66.2 3.5 111 293-409 401-517 (771)
438 cd03285 ABC_MSH2_euk MutS2 hom 92.0 0.06 1.3E-06 57.7 0.9 23 214-236 29-51 (222)
439 TIGR03575 selen_PSTK_euk L-ser 92.0 0.35 7.7E-06 54.7 7.0 21 218-238 2-22 (340)
440 PTZ00185 ATPase alpha subunit; 92.0 0.88 1.9E-05 53.5 10.2 91 214-304 188-299 (574)
441 KOG0473 Leucine-rich repeat pr 92.0 0.012 2.7E-07 59.6 -4.0 87 607-695 30-117 (326)
442 cd03244 ABCC_MRP_domain2 Domai 91.9 0.98 2.1E-05 48.8 10.4 23 215-237 30-52 (221)
443 cd03283 ABC_MutS-like MutS-lik 91.9 0.42 9E-06 50.3 7.2 22 216-237 26-47 (199)
444 COG0003 ArsA Predicted ATPase 91.9 0.22 4.8E-06 55.9 5.3 49 215-265 2-50 (322)
445 COG1936 Predicted nucleotide k 91.9 0.13 2.7E-06 50.6 2.8 20 217-236 2-21 (180)
446 PRK11823 DNA repair protein Ra 91.8 0.73 1.6E-05 55.1 9.9 82 214-303 79-165 (446)
447 TIGR01447 recD exodeoxyribonuc 91.8 0.51 1.1E-05 58.3 8.7 22 216-237 161-182 (586)
448 PF06745 KaiC: KaiC; InterPro 91.8 0.19 4.1E-06 54.6 4.6 87 213-303 17-124 (226)
449 COG4181 Predicted ABC-type tra 91.8 1.3 2.8E-05 43.4 9.3 84 257-341 121-214 (228)
450 KOG0729 26S proteasome regulat 91.8 0.3 6.4E-06 50.8 5.5 56 188-245 177-239 (435)
451 cd02024 NRK1 Nicotinamide ribo 91.7 0.11 2.4E-06 53.5 2.5 22 217-238 1-22 (187)
452 TIGR00416 sms DNA repair prote 91.7 0.98 2.1E-05 54.1 10.8 83 213-303 92-179 (454)
453 PF13504 LRR_7: Leucine rich r 91.7 0.11 2.4E-06 29.6 1.4 17 595-611 1-17 (17)
454 CHL00206 ycf2 Ycf2; Provisiona 91.7 0.61 1.3E-05 62.9 9.5 25 214-238 1629-1653(2281)
455 PRK13765 ATP-dependent proteas 91.7 0.26 5.5E-06 61.0 6.0 75 188-272 31-105 (637)
456 cd03369 ABCC_NFT1 Domain 2 of 91.7 1.5 3.2E-05 46.8 11.3 23 215-237 34-56 (207)
457 COG0467 RAD55 RecA-superfamily 91.7 0.32 6.9E-06 54.0 6.3 50 213-266 21-70 (260)
458 PRK05917 DNA polymerase III su 91.6 1.6 3.6E-05 48.1 11.5 134 197-351 6-154 (290)
459 cd01136 ATPase_flagellum-secre 91.6 1.1 2.4E-05 50.5 10.3 85 215-303 69-168 (326)
460 COG3640 CooC CO dehydrogenase 91.6 0.25 5.4E-06 51.1 4.7 43 217-260 2-44 (255)
461 COG1224 TIP49 DNA helicase TIP 91.6 0.29 6.2E-06 53.6 5.4 55 187-245 38-95 (450)
462 PRK00131 aroK shikimate kinase 91.6 0.14 3E-06 53.0 3.2 24 215-238 4-27 (175)
463 cd03284 ABC_MutS1 MutS1 homolo 91.5 0.21 4.6E-06 53.3 4.5 21 216-236 31-51 (216)
464 TIGR03574 selen_PSTK L-seryl-t 91.5 0.33 7.1E-06 53.5 6.1 21 218-238 2-22 (249)
465 cd02023 UMPK Uridine monophosp 91.5 0.12 2.6E-06 54.7 2.6 21 217-237 1-21 (198)
466 TIGR02915 PEP_resp_reg putativ 91.4 1.3 2.7E-05 54.1 11.7 46 189-238 140-185 (445)
467 TIGR03498 FliI_clade3 flagella 91.4 0.65 1.4E-05 54.3 8.6 86 215-303 140-239 (418)
468 PRK13543 cytochrome c biogenes 91.4 1.6 3.5E-05 46.7 11.3 24 215-238 37-60 (214)
469 cd04159 Arl10_like Arl10-like 91.4 1.6 3.5E-05 43.9 10.8 21 218-238 2-22 (159)
470 PRK07276 DNA polymerase III su 91.4 4.7 0.0001 44.8 14.7 70 293-363 103-174 (290)
471 PRK09544 znuC high-affinity zi 91.3 0.92 2E-05 49.9 9.4 24 215-238 30-53 (251)
472 PRK09280 F0F1 ATP synthase sub 91.3 0.8 1.7E-05 53.9 9.2 89 214-303 143-247 (463)
473 PRK09435 membrane ATPase/prote 91.3 0.67 1.4E-05 52.5 8.3 38 197-238 42-79 (332)
474 TIGR03522 GldA_ABC_ATP gliding 91.3 1.1 2.4E-05 50.9 10.3 23 215-237 28-50 (301)
475 PRK10751 molybdopterin-guanine 91.3 0.21 4.5E-06 50.4 3.8 25 214-238 5-29 (173)
476 cd02029 PRK_like Phosphoribulo 91.2 0.46 1E-05 51.1 6.5 77 217-295 1-85 (277)
477 PRK12597 F0F1 ATP synthase sub 91.2 0.6 1.3E-05 55.2 8.1 89 214-303 142-246 (461)
478 TIGR01359 UMP_CMP_kin_fam UMP- 91.2 0.13 2.9E-06 53.6 2.5 21 217-237 1-21 (183)
479 KOG0737 AAA+-type ATPase [Post 91.2 0.55 1.2E-05 52.1 7.2 29 215-245 127-155 (386)
480 TIGR02322 phosphon_PhnN phosph 91.2 0.16 3.5E-06 52.7 3.1 23 216-238 2-24 (179)
481 PRK11388 DNA-binding transcrip 91.2 0.65 1.4E-05 59.2 9.2 130 188-333 325-466 (638)
482 cd01134 V_A-ATPase_A V/A-type 91.1 1.4 3E-05 49.5 10.3 48 215-266 157-205 (369)
483 PRK08927 fliI flagellum-specif 91.1 0.82 1.8E-05 53.6 8.9 86 214-303 157-257 (442)
484 PRK12678 transcription termina 91.1 0.65 1.4E-05 55.2 8.0 89 214-303 415-512 (672)
485 TIGR00764 lon_rel lon-related 91.0 0.41 8.9E-06 59.6 6.9 76 187-272 17-92 (608)
486 cd00227 CPT Chloramphenicol (C 91.0 0.17 3.7E-06 52.2 3.1 23 216-238 3-25 (175)
487 KOG0652 26S proteasome regulat 90.9 2.2 4.8E-05 44.5 10.6 50 188-237 171-227 (424)
488 cd01132 F1_ATPase_alpha F1 ATP 90.9 0.88 1.9E-05 49.5 8.4 85 215-303 69-170 (274)
489 PRK15115 response regulator Gl 90.9 2 4.2E-05 52.4 12.7 46 189-238 135-180 (444)
490 KOG0736 Peroxisome assembly fa 90.9 1.2 2.6E-05 54.2 9.9 98 188-305 672-775 (953)
491 PF01078 Mg_chelatase: Magnesi 90.9 0.28 6.2E-06 50.6 4.4 42 188-237 3-44 (206)
492 PRK08149 ATP synthase SpaL; Va 90.8 0.84 1.8E-05 53.4 8.7 85 215-303 151-250 (428)
493 COG2019 AdkA Archaeal adenylat 90.7 0.21 4.7E-06 48.5 3.1 23 215-237 4-26 (189)
494 cd03280 ABC_MutS2 MutS2 homolo 90.7 0.58 1.3E-05 49.5 6.9 21 216-236 29-49 (200)
495 TIGR01420 pilT_fam pilus retra 90.7 0.31 6.8E-06 56.3 5.2 107 216-333 123-229 (343)
496 PRK13947 shikimate kinase; Pro 90.7 0.17 3.8E-06 52.0 2.8 21 217-237 3-23 (171)
497 KOG3347 Predicted nucleotide k 90.7 0.19 4E-06 47.7 2.6 23 215-237 7-29 (176)
498 PF00625 Guanylate_kin: Guanyl 90.6 0.27 5.9E-06 51.2 4.2 38 215-254 2-39 (183)
499 cd00984 DnaB_C DnaB helicase C 90.6 1.3 2.7E-05 48.8 9.7 53 214-269 12-64 (242)
500 smart00534 MUTSac ATPase domai 90.6 0.93 2E-05 47.2 8.1 20 217-236 1-20 (185)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=9.4e-78 Score=743.85 Aligned_cols=647 Identities=30% Similarity=0.470 Sum_probs=511.0
Q ss_pred HHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhhhHHHHHH
Q 048507 8 ILTASVDLLVNKLASVGIRLFPRQDQIRADLMKWKTMLLKIKAVLDDAEEKRTTDWSVKLWLGDLQNLAYDVEDLLDEFQ 87 (1448)
Q Consensus 8 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~~~~~~~~~~wl~~lr~~~yd~ed~ld~~~ 87 (1448)
.++..++++.+.+.. ++....|+++.+..|++.|..++.+++|++.++.....+..|.+.++|++|++||.++.|.
T Consensus 4 ~~s~~~~~~~~~l~~----~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~ 79 (889)
T KOG4658|consen 4 CVSFGVEKLDQLLNR----ESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFL 79 (889)
T ss_pred EEEEehhhHHHHHHH----HHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555554332 3334457788999999999999999999999988888899999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCcccccccceecccccccccCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcCCCccc
Q 048507 88 TEAFRRRLLLGNGEPAAAHDQPSSSRTRTSKVRKLIPTCCTTFTPQSIQFDYALMSKIKEINDRFQDIVTQKDSLGLNVS 167 (1448)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~ 167 (1448)
......+... ...+ ....++.+ |+ ..+.++.+..+..+.+++-.+.+.++.++....
T Consensus 80 v~~~~~~~~~-------------~l~~-~~~~~~~~--c~-------~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~ 136 (889)
T KOG4658|consen 80 VEEIERKAND-------------LLST-RSVERQRL--CL-------CGFCSKNVSDSYKYGKRVSKVLREVESLGSKGV 136 (889)
T ss_pred HHHHHHHHhH-------------Hhhh-hHHHHHHH--hh-------hhhHhHhhhhhHhHHHHHHHHHHHHHHhccccc
Confidence 8776543221 0000 00111111 11 134556667777777777777777777664432
Q ss_pred cCCCC--cccccccccccccccCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcc-cccc
Q 048507 168 SAGGS--KKARKRLETTRLVTEAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKR-VQDH 244 (1448)
Q Consensus 168 ~~~~~--~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~ 244 (1448)
..... ...+...++.+...... ||.++.++++.+.|.+.+ ..+++|+||||+||||||++++++.. +..+
T Consensus 137 ~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~ 209 (889)
T KOG4658|consen 137 FEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNH 209 (889)
T ss_pred eecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhccc
Confidence 21111 11122234445444555 999999999999998753 28999999999999999999999987 9999
Q ss_pred cceEEEEEeCCccCHHHHHHHHHHhccCCCCC--CCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccCCC
Q 048507 245 FDLKAWTCVSDDFDVKGLTKTILRSVTKQTID--DSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEAGA 322 (1448)
Q Consensus 245 f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~ 322 (1448)
|+.++||.||+.++...++++|++.++..... ....++++..+.+.|+++||+|||||||+. .+|+.+..++|...
T Consensus 210 Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~ 287 (889)
T KOG4658|consen 210 FDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRE 287 (889)
T ss_pred CceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCcc
Confidence 99999999999999999999999998875433 333478889999999999999999999998 66999999999988
Q ss_pred CCcEEEEEcCchhhhhc-cCCcceEeCCCCCHHHHHHHHhhcccCCc----hhhHHHHHHHHHhcCCchHHHHHHHhhhc
Q 048507 323 PGSKIIVTTRNQEVADI-MGTASAYQLKKLSIDDCLAVVAQHSLGSD----KLLEEIGKKIVAKCDGLPLAAQTLGGLLR 397 (1448)
Q Consensus 323 ~gs~ilvTtR~~~v~~~-~~~~~~~~l~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~g~PLal~~~~~~l~ 397 (1448)
.||+|++|||+.+|+.. +++...++++.|+++|||.+|.+.++... +..+++|++++++|+|+|||++++|+.|+
T Consensus 288 ~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma 367 (889)
T KOG4658|consen 288 NGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLA 367 (889)
T ss_pred CCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhc
Confidence 99999999999999988 78888999999999999999999997763 34789999999999999999999999999
Q ss_pred cCCChhHHHHHHhccccC----CCCcccchhhHHHHhhhcCChhhHHHHhhhcccCCCceeCHHHHHHHHHHcCCCcCCC
Q 048507 398 GKCDRSDWEDLLSCKIWN----LPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKE 473 (1448)
Q Consensus 398 ~~~~~~~w~~~~~~~~~~----~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~i~~~~li~~w~~~g~~~~~~ 473 (1448)
.|.+..+|+++.....+. .++..+.+++++.+||+.||++.|.||+|||+||+||.|+++.++.+|+||||+.+..
T Consensus 368 ~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~ 447 (889)
T KOG4658|consen 368 CKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLD 447 (889)
T ss_pred CCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccc
Confidence 999999999999876554 2333568899999999999999999999999999999999999999999999998877
Q ss_pred CCCChHHHHHHHHHHHHhCCcccccC--CCcceEEEeHHHHHHHHHHhc-----cceEEEecccccc--ccccccCccee
Q 048507 474 SGNPNEDLGRKFFQELRGRSFFQQSS--NNISRFVMHDLINDLARWAAG-----ETYFTLEYTSEVN--KQQCFSRNLRH 544 (1448)
Q Consensus 474 ~~~~~~~~~~~~~~~L~~~sll~~~~--~~~~~~~mH~lv~~~a~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~r~ 544 (1448)
.+..++++|++|+++|++++|+.... .+...|.|||+|||+|.|+++ .+...+..+.... .....+..+|+
T Consensus 448 ~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr 527 (889)
T KOG4658|consen 448 GGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRR 527 (889)
T ss_pred cccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeE
Confidence 78899999999999999999999866 456789999999999999999 4544444321111 11122356899
Q ss_pred eEEEeccCcccccchhhhccccccEeeccccccCCCCCCchhhhhhhc-ccCceeEEEeCCCC-ccccCccccCCccceE
Q 048507 545 LSYIRGDYDGVQRFEKLYDIQHLRTFLPVMLSNSLHGYLAPSILTELF-KLQRLRVFSLRGYR-IDELPDSIGDLRYFRY 622 (1448)
Q Consensus 545 l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~n~-i~~lp~~i~~l~~L~~ 622 (1448)
+++..+..... ..-...++|++|+...... -...++..+| .++.|++|||++|. +.++|++|++|.+|||
T Consensus 528 ~s~~~~~~~~~---~~~~~~~~L~tLll~~n~~-----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 528 MSLMNNKIEHI---AGSSENPKLRTLLLQRNSD-----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred EEEeccchhhc---cCCCCCCccceEEEeecch-----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 99887764332 2234556799987544321 1235666767 89999999999876 7899999999999999
Q ss_pred EeccCccccccChhhhccccccEEeccCCchhhcccccccccCCCCeeeecCCCCccccccccCcccccccccceec
Q 048507 623 LNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVV 699 (1448)
Q Consensus 623 L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~ 699 (1448)
|+|+++.|+.+|..+++|+.|.+|++.++..+..+|..+..|.+||+|.+.... ...-...++.+.+|++|..+.+
T Consensus 600 L~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 600 LDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred ccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhhee
Confidence 999999999999999999999999999987777777777889999999997765 2222223555556666644433
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=9.5e-61 Score=632.39 Aligned_cols=473 Identities=21% Similarity=0.290 Sum_probs=343.4
Q ss_pred cCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEe---CCc-------
Q 048507 187 EAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCV---SDD------- 256 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~------- 256 (1448)
...+|||++.++++..+|.-. ..++++|+||||||+||||||+++|+ ++..+|+..+|+.. ...
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~ 256 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSA 256 (1153)
T ss_pred cccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccc
Confidence 456999999999999988532 34689999999999999999999998 67788988888742 110
Q ss_pred ----cC-HHHHHHHHHHhccCCCC-CCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEE
Q 048507 257 ----FD-VKGLTKTILRSVTKQTI-DDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVT 330 (1448)
Q Consensus 257 ----~~-~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvT 330 (1448)
.. ...++++++.++..... ..... ..+++.++++|+||||||||+. ..|+.+.....+.++|++||||
T Consensus 257 ~~~~~~~~~~l~~~~l~~il~~~~~~~~~~----~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiT 330 (1153)
T PLN03210 257 NPDDYNMKLHLQRAFLSEILDKKDIKIYHL----GAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVI 330 (1153)
T ss_pred cccccchhHHHHHHHHHHHhCCCCcccCCH----HHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEE
Confidence 01 12344455554432211 11112 3567788999999999999875 6788887766677889999999
Q ss_pred cCchhhhhccCCcceEeCCCCCHHHHHHHHhhcccCCc---hhhHHHHHHHHHhcCCchHHHHHHHhhhccCCChhHHHH
Q 048507 331 TRNQEVADIMGTASAYQLKKLSIDDCLAVVAQHSLGSD---KLLEEIGKKIVAKCDGLPLAAQTLGGLLRGKCDRSDWED 407 (1448)
Q Consensus 331 tR~~~v~~~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~---~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w~~ 407 (1448)
||+++++...+...+|+++.++.++|+++|+++||+.. +...+++++|+++|+|+||||+++|+.|+++ +..+|+.
T Consensus 331 Trd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~ 409 (1153)
T PLN03210 331 TKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMD 409 (1153)
T ss_pred eCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHH
Confidence 99999998777778999999999999999999998754 4567899999999999999999999999987 7899999
Q ss_pred HHhccccCCCCcccchhhHHHHhhhcCCh-hhHHHHhhhcccCCCceeCHHHHHHHHHHcCCCcCCCCCCChHHHHHHHH
Q 048507 408 LLSCKIWNLPEERCDIIPALRVSYYYLSA-PLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKESGNPNEDLGRKFF 486 (1448)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~~f~~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~ 486 (1448)
+++...... ...|.++|++||+.|++ ..|.||+++|+|+.+..++. +..|.+.+... ++..+
T Consensus 410 ~l~~L~~~~---~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~---v~~~l~~~~~~-----------~~~~l 472 (1153)
T PLN03210 410 MLPRLRNGL---DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND---IKLLLANSDLD-----------VNIGL 472 (1153)
T ss_pred HHHHHHhCc---cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH---HHHHHHhcCCC-----------chhCh
Confidence 998755433 24799999999999986 59999999999999875543 56677765442 12248
Q ss_pred HHHHhCCcccccCCCcceEEEeHHHHHHHHHHhccce-------EEEecccc--ccccccccCcceeeEEEeccCccc-c
Q 048507 487 QELRGRSFFQQSSNNISRFVMHDLINDLARWAAGETY-------FTLEYTSE--VNKQQCFSRNLRHLSYIRGDYDGV-Q 556 (1448)
Q Consensus 487 ~~L~~~sll~~~~~~~~~~~mH~lv~~~a~~~~~~~~-------~~~~~~~~--~~~~~~~~~~~r~l~~~~~~~~~~-~ 556 (1448)
+.|+++||++... .++.|||++|+||+++++++. +.+..... ..........++++++........ .
T Consensus 473 ~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i 549 (1153)
T PLN03210 473 KNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHI 549 (1153)
T ss_pred HHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeee
Confidence 9999999998754 369999999999999987653 11111000 000011124456665543322211 1
Q ss_pred cchhhhccccccEeeccccccCCCCCCchhhhhhhccc-CceeEEEeCCCCccccCccccCCccceEEeccCccccccCh
Q 048507 557 RFEKLYDIQHLRTFLPVMLSNSLHGYLAPSILTELFKL-QRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPE 635 (1448)
Q Consensus 557 ~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp~ 635 (1448)
....+..+.+|+.|..+.............+|..+..+ .+||.|++.++.+..+|..| .+.+|+.|++++|.+..+|.
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~ 628 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWD 628 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccc
Confidence 12345667777776543221101111122345555544 46888888888888888777 56788888888888888888
Q ss_pred hhhccccccEEeccCCchhhcccccccccCCCCeeeecCCCCccccccccCcccccccc
Q 048507 636 SVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL 694 (1448)
Q Consensus 636 ~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L 694 (1448)
.+..+++|++|+|++|..+..+|. ++.+++|++|++++|..+..+|..++++++|+.|
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 888888888888888777777774 7788888888888887677777777766666666
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.9e-39 Score=367.76 Aligned_cols=274 Identities=37% Similarity=0.641 Sum_probs=224.8
Q ss_pred cchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccC
Q 048507 193 RETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTK 272 (1448)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 272 (1448)
||.++++|.++|.... .+.++|+|+||||+||||||++++++...+.+|+.++|+.++...+...++..|+++++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998742 578999999999999999999999876789999999999999999999999999999987
Q ss_pred CCC---CCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchhhhhccCC-cceEeC
Q 048507 273 QTI---DDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQEVADIMGT-ASAYQL 348 (1448)
Q Consensus 273 ~~~---~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~-~~~~~l 348 (1448)
... ...+.+...+.+++.++++++||||||||+. ..|+.+...++....|++||||||+..++..++. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 643 4567888999999999999999999999876 5788888777777779999999999998876654 678999
Q ss_pred CCCCHHHHHHHHhhcccCCc----hhhHHHHHHHHHhcCCchHHHHHHHhhhccCCChhHHHHHHhccccCCC---Cccc
Q 048507 349 KKLSIDDCLAVVAQHSLGSD----KLLEEIGKKIVAKCDGLPLAAQTLGGLLRGKCDRSDWEDLLSCKIWNLP---EERC 421 (1448)
Q Consensus 349 ~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w~~~~~~~~~~~~---~~~~ 421 (1448)
++|+.+||+++|.+.++... +..++.+++|+++|+|+||||+++|++|+.+.+..+|+.+++...+... +...
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~ 234 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDR 234 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999986544 4456789999999999999999999999766577899998875444332 2346
Q ss_pred chhhHHHHhhhcCChhhHHHHhhhcccCCCceeCHHHHHHHHHHcCCCcCC
Q 048507 422 DIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHK 472 (1448)
Q Consensus 422 ~i~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~i~~~~li~~w~~~g~~~~~ 472 (1448)
.+..++.+||+.||++.|+||+|||+||+++.|+++.++++|+++|++...
T Consensus 235 ~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 235 SVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 789999999999999999999999999999999999999999999999753
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-36 Score=407.37 Aligned_cols=203 Identities=14% Similarity=0.141 Sum_probs=139.9
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEec
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEIS 1239 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~ 1239 (1448)
+|+.|++++|...+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|+..+.+|..+ ..++|+.|+++
T Consensus 405 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls 483 (968)
T PLN00113 405 SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLS 483 (968)
T ss_pred CCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECc
Confidence 67777777777777777777777777777777777777777777777777777777777766666543 34677777887
Q ss_pred CccCccccccccCCCCcccceecccCCCccccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecCCCcCc
Q 048507 1240 DCNRLEALPKGLHNLKSLQELRIGVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDMV 1319 (1448)
Q Consensus 1240 ~~~~~~~~p~~l~~l~~L~~L~l~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~ 1319 (1448)
+|...+.+|..+.++++|+.|++ ++|. .....+..+.++++|++|+|++|. ..+
T Consensus 484 ~n~l~~~~~~~~~~l~~L~~L~L---------------------s~N~----l~~~~p~~~~~l~~L~~L~Ls~N~-l~~ 537 (968)
T PLN00113 484 RNQFSGAVPRKLGSLSELMQLKL---------------------SENK----LSGEIPDELSSCKKLVSLDLSHNQ-LSG 537 (968)
T ss_pred CCccCCccChhhhhhhccCEEEC---------------------cCCc----ceeeCChHHcCccCCCEEECCCCc-ccc
Confidence 77777777777776666666666 3331 112334456667777777777752 223
Q ss_pred cccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCCCCCCcccccceeccCCchH
Q 048507 1320 SFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFPEKGLPSSLLQLSIYRCPLI 1396 (1448)
Q Consensus 1320 ~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~i~~c~~l 1396 (1448)
.+| ..+..+++|+.|+|++|...+.+|..+.++++|+.|++++|+..+.+|..+...++....+.++|.+
T Consensus 538 ~~p-------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 538 QIP-------ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDL 607 (968)
T ss_pred cCC-------hhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccc
Confidence 333 3346677788888888777777887777788888888888877777887666666666666666544
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.8e-35 Score=389.48 Aligned_cols=225 Identities=19% Similarity=0.128 Sum_probs=157.3
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEec
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEIS 1239 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~ 1239 (1448)
+|+.|++++|...+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|+..+.+|..+..+++|+.|+++
T Consensus 357 ~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 436 (968)
T PLN00113 357 NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDIS 436 (968)
T ss_pred CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECc
Confidence 56666666666555666666666666666666666666666666666666666666665555556555556666666666
Q ss_pred CccCccccccccCCCCcccceec-ccCCC-ccccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecCCCc
Q 048507 1240 DCNRLEALPKGLHNLKSLQELRI-GVELP-SLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDD 1317 (1448)
Q Consensus 1240 ~~~~~~~~p~~l~~l~~L~~L~l-~~~l~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~ 1317 (1448)
+|...+.+|..+..+++|+.|++ +|.+. .++.....++|+.|++++|.. ....+..+.++++|+.|++++| ..
T Consensus 437 ~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l----~~~~~~~~~~l~~L~~L~Ls~N-~l 511 (968)
T PLN00113 437 NNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQF----SGAVPRKLGSLSELMQLKLSEN-KL 511 (968)
T ss_pred CCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCcc----CCccChhhhhhhccCEEECcCC-cc
Confidence 66666666655666666666666 33322 122222236788888888853 2455667889999999999996 34
Q ss_pred CccccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCCCC-CCcccccceeccCCchH
Q 048507 1318 MVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFPEK-GLPSSLLQLSIYRCPLI 1396 (1448)
Q Consensus 1318 ~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~i~~c~~l 1396 (1448)
...+|. .+..+++|+.|+|++|...+.+|..+.++++|+.|++++|+..+.+|.. ..+++|+.|++++|+..
T Consensus 512 ~~~~p~-------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 512 SGEIPD-------ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred eeeCCh-------HHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 444553 4578899999999999888899999999999999999999988888874 44789999999999743
No 6
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=5.3e-27 Score=272.45 Aligned_cols=489 Identities=21% Similarity=0.257 Sum_probs=289.0
Q ss_pred hhhhhhhcccCceeEEEeCCCCccccCcc-ccCCccceEEeccCccccccChhhhccccccEEeccCCchhhcccccccc
Q 048507 585 PSILTELFKLQRLRVFSLRGYRIDELPDS-IGDLRYFRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGN 663 (1448)
Q Consensus 585 ~~~~~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~i~~ 663 (1448)
..+|..++....+..|+++.|.+-..|-. +.+..+|+.||+++|.+...|..+..+.+|+.|+++.| .+...|.++.+
T Consensus 11 ~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~~vp~s~~~ 89 (1081)
T KOG0618|consen 11 ELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN-YIRSVPSSCSN 89 (1081)
T ss_pred cccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchh-hHhhCchhhhh
Confidence 45677777666688899988887666633 34556699999999999999999999999999999985 78888988999
Q ss_pred cCCCCeeeecCCCCccccccccCcccccccccceecccCCCCCccccccccccCceeEEeecCCccchhhhHHhhcCCCC
Q 048507 664 LAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGQGSGSGLRELKLLTHLHGTLKISKLENVKCVGDAMEAQMDGKK 743 (1448)
Q Consensus 664 L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~ 743 (1448)
+.+|++|.|.+|. +..+|.++..+++|+.|+.. .+.+.. .+..+..+.
T Consensus 90 ~~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS------------------------~N~f~~-------~Pl~i~~lt 137 (1081)
T KOG0618|consen 90 MRNLQYLNLKNNR-LQSLPASISELKNLQYLDLS------------------------FNHFGP-------IPLVIEVLT 137 (1081)
T ss_pred hhcchhheeccch-hhcCchhHHhhhcccccccc------------------------hhccCC-------CchhHHhhh
Confidence 9999999999888 88899888888888888331 111110 011111111
Q ss_pred CCCeEEEEeecCCCCCCChhhhhHHhhhccCCCCCCcceeEEecee-cCCCCCceEeCccccCCCCCCCCCccceeeccc
Q 048507 744 NLKELSLNWTCSTDGSSSREVETEMGVLDMLKPHTNLEQFCIKGYG-VSGMSRVKRLGSEFYGNDSPIPFPCLETLLFEN 822 (1448)
Q Consensus 744 ~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~-i~~l~~l~~l~~~~~~~~~~~~~~~L~~L~l~~ 822 (1448)
. ++.+..++|. +..+.
T Consensus 138 ~-----------------------------------~~~~~~s~N~~~~~lg---------------------------- 154 (1081)
T KOG0618|consen 138 A-----------------------------------EEELAASNNEKIQRLG---------------------------- 154 (1081)
T ss_pred H-----------------------------------HHHHhhhcchhhhhhc----------------------------
Confidence 1 2222222220 00000
Q ss_pred cccccccccCCCcccCccCcccceeecccCcccccCCCCCCCCccE-EEEccccCcccccccccccceeecccccceeee
Q 048507 823 MQEWEDWIPHGFSQGVEGFPKLRELQILSCSKLQGTFPEHLPALEK-LVIKGCEELSVLVSSLPALCKLQIGGCKKVVWR 901 (1448)
Q Consensus 823 ~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~-L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~ 901 (1448)
. ..++++++..+ .+.+.++.....|++ |++.+|.........+++|+.|....+....+.
T Consensus 155 -----------------~-~~ik~~~l~~n-~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~ 215 (1081)
T KOG0618|consen 155 -----------------Q-TSIKKLDLRLN-VLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELE 215 (1081)
T ss_pred -----------------c-ccchhhhhhhh-hcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEE
Confidence 0 00222222222 122233333333333 444444433333334444444443333222111
Q ss_pred cccccCCCccccccccCCccccccCccccccchhhhhhccccccceeeccCCccccccCCcceEeecCCCCccccchhhh
Q 048507 902 SATDHLGSQNSVVCRDTSNQVFLAGPLKLRLPKLEELILSTKEQTYIWKSHDGLLQDICSLKRLTIDSCPTLQSLVAEEE 981 (1448)
Q Consensus 902 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~i~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~ 981 (1448)
-.-++|+.|..++|+..+....
T Consensus 216 -------------------------------------------------------~~g~~l~~L~a~~n~l~~~~~~--- 237 (1081)
T KOG0618|consen 216 -------------------------------------------------------ISGPSLTALYADHNPLTTLDVH--- 237 (1081)
T ss_pred -------------------------------------------------------ecCcchheeeeccCcceeeccc---
Confidence 1113444444444433321111
Q ss_pred hHHHhhhhhhccccceEEecccCCccccccccCccCCcceeeeccCCCCcccCC-CCCccccceeEecccCCCCccchhh
Q 048507 982 KDQQQQLCELSCRLEYLELNECKGLVKLPQSSLSLSSLREIEICGCSSLVSFPE-VALPAKLRIISINSCDALKWLPEAW 1060 (1448)
Q Consensus 982 ~~~~~~l~~~~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~lp~~~ 1060 (1448)
..+.+|++++++. +.+..+|+++..+.+|+.+++.+| .+..+|. .....+|+.|.+..|. ++.+|...
T Consensus 238 --------p~p~nl~~~dis~-n~l~~lp~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~l 306 (1081)
T KOG0618|consen 238 --------PVPLNLQYLDISH-NNLSNLPEWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAYNE-LEYIPPFL 306 (1081)
T ss_pred --------cccccceeeecch-hhhhcchHHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcc
Confidence 1234566666666 334555566666666666666664 3344443 2234556666555543 34444332
Q ss_pred ccCCCCCcceEEEecCCCcccccCCc--CC-cCccEEEEecCCCCcccccccccccccCCccCCCCccceeeccCCCCcc
Q 048507 1061 MCDFNSSLEILSIECCRSLTYIAGVQ--LP-PSLKRLYIEFCDNIRTLTVEEGVQRSSSSRRCTSSLLEELDINSCPSLT 1137 (1448)
Q Consensus 1061 ~~~~~~~L~~L~l~~c~~l~~~~~~~--~~-~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 1137 (1448)
. .+.+|+.|+|..|. +..++... .+ .+|..|+.+.+ .+..++
T Consensus 307 e--~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp------------------------------- 351 (1081)
T KOG0618|consen 307 E--GLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSN-KLSTLP------------------------------- 351 (1081)
T ss_pred c--ccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhc-cccccc-------------------------------
Confidence 2 24556666665542 22222100 00 01111111111 000000
Q ss_pred cccccCCCchhhhccccCCCCccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccC
Q 048507 1138 CIFSKNELPATLESLEVGNLPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRC 1217 (1448)
Q Consensus 1138 ~i~~~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~ 1217 (1448)
. ......+.|+.|++.+|.......+.+.++.+|+.|+|++|.+.......+.++..|++|+|++|
T Consensus 352 -------------~-~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN 417 (1081)
T KOG0618|consen 352 -------------S-YEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN 417 (1081)
T ss_pred -------------c-ccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc
Confidence 0 00111237888999999888887778999999999999997765544456788999999999994
Q ss_pred CCccccCCCCCCCCCccEEEecCccCccccccccCCCCcccceec-ccCCCccccC-CCC-Cccceeeeccccccccccc
Q 048507 1218 GNLVSFPKGGLPGAKLTRLEISDCNRLEALPKGLHNLKSLQELRI-GVELPSLEED-GLP-TNLHSLGIRGNMEIWKSTI 1294 (1448)
Q Consensus 1218 ~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~-~~~-~~L~~L~l~~n~~~~~~~~ 1294 (1448)
.++.+|..+..+..|++|...+|. +-.+| .+..++.|+.+|+ +|++...... ..| ++|++||++||..+ .
T Consensus 418 -kL~~Lp~tva~~~~L~tL~ahsN~-l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l----~ 490 (1081)
T KOG0618|consen 418 -KLTTLPDTVANLGRLHTLRAHSNQ-LLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL----V 490 (1081)
T ss_pred -hhhhhhHHHHhhhhhHHHhhcCCc-eeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc----c
Confidence 688899988899999999988865 55678 7889999999999 8888775543 455 89999999999754 3
Q ss_pred ccCCccccCCCccEEEEec
Q 048507 1295 ERGRGFHRFSSLQHLTIEG 1313 (1448)
Q Consensus 1295 ~~~~~~~~l~~L~~L~l~~ 1313 (1448)
.....|..+.++..+++.-
T Consensus 491 ~d~~~l~~l~~l~~~~i~~ 509 (1081)
T KOG0618|consen 491 FDHKTLKVLKSLSQMDITL 509 (1081)
T ss_pred cchhhhHHhhhhhheeccc
Confidence 4455666666776666654
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=3.2e-27 Score=248.00 Aligned_cols=106 Identities=28% Similarity=0.495 Sum_probs=87.7
Q ss_pred hhhhhcccCceeEEEeCCCCccccCccccCCccceEEeccCccccccChhhhccccccEEeccCCchhhcccccccccCC
Q 048507 587 ILTELFKLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAK 666 (1448)
Q Consensus 587 ~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~~ 666 (1448)
+.+++.++..|.+|++++|.+.++|.+++.+..++.|+.++|++..+|+.++.+.+|..|+.++| ....+|++|+.+..
T Consensus 60 l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~ 138 (565)
T KOG0472|consen 60 LREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLLD 138 (565)
T ss_pred ccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc-ceeecCchHHHHhh
Confidence 44556678888888888888888888888888888888888888888888888888888888885 67778888888888
Q ss_pred CCeeeecCCCCccccccccCcccccccc
Q 048507 667 LHHLKNSNTKSLEEMPVGIGRLTSLQTL 694 (1448)
Q Consensus 667 L~~L~l~~~~~l~~~p~~i~~L~~L~~L 694 (1448)
|+.|+..+|+ +..+|.+++.+.+|..|
T Consensus 139 l~dl~~~~N~-i~slp~~~~~~~~l~~l 165 (565)
T KOG0472|consen 139 LEDLDATNNQ-ISSLPEDMVNLSKLSKL 165 (565)
T ss_pred hhhhhccccc-cccCchHHHHHHHHHHh
Confidence 8888888888 78888888877777666
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=4.2e-24 Score=234.79 Aligned_cols=361 Identities=17% Similarity=0.152 Sum_probs=173.9
Q ss_pred ccceEEecccCCccccccccCccCCcceeeeccCCCCcccCCCCCcc-ccceeEecccCCCCccchhhccCCCCCcceEE
Q 048507 994 RLEYLELNECKGLVKLPQSSLSLSSLREIEICGCSSLVSFPEVALPA-KLRIISINSCDALKWLPEAWMCDFNSSLEILS 1072 (1448)
Q Consensus 994 ~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~-~L~~L~l~~~~~l~~lp~~~~~~~~~~L~~L~ 1072 (1448)
.-+.|++++|.....-+..|.++++|+++++.+| .++.+|.++... +|+.|+|.+|...+.-.+.+. .++.|+.||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~--~l~alrslD 155 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELS--ALPALRSLD 155 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHHH--hHhhhhhhh
Confidence 4444555553333333344555566666666553 555555544433 356666655433222222221 355566666
Q ss_pred EecCCCcccccCCcCC--cCccEEEEecCCCCcccccccccccccCCccCCCCccceeeccCCCCcccccccCCCchhhh
Q 048507 1073 IECCRSLTYIAGVQLP--PSLKRLYIEFCDNIRTLTVEEGVQRSSSSRRCTSSLLEELDINSCPSLTCIFSKNELPATLE 1150 (1448)
Q Consensus 1073 l~~c~~l~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~ 1150 (1448)
|+.|. +..++.-.+| .++++|+++++. ++.+. .+ .+..+.+|..|.++....-+ +|
T Consensus 156 LSrN~-is~i~~~sfp~~~ni~~L~La~N~-It~l~--~~-------~F~~lnsL~tlkLsrNritt-------Lp---- 213 (873)
T KOG4194|consen 156 LSRNL-ISEIPKPSFPAKVNIKKLNLASNR-ITTLE--TG-------HFDSLNSLLTLKLSRNRITT-------LP---- 213 (873)
T ss_pred hhhch-hhcccCCCCCCCCCceEEeecccc-ccccc--cc-------cccccchheeeecccCcccc-------cC----
Confidence 65542 3333322222 345555555542 11110 00 00011123333333211100 00
Q ss_pred ccccCCCCccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCC
Q 048507 1151 SLEVGNLPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPG 1230 (1448)
Q Consensus 1151 ~l~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~ 1230 (1448)
...+..+| .|+.|+|..|.+-..-.-.|.++++|+.|.+..|.+...--..|..+.++++|+|+.|+....-..+.+.+
T Consensus 214 ~r~Fk~L~-~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL 292 (873)
T KOG4194|consen 214 QRSFKRLP-KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL 292 (873)
T ss_pred HHHhhhcc-hhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc
Confidence 01112222 56666665554433323356666666666666666555445555666666666666643322223344556
Q ss_pred CCccEEEecCccCccccccccCCCCcccceec-ccCCCccccCCC--CCccceeeecccccccccccccCCccccCCCcc
Q 048507 1231 AKLTRLEISDCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGL--PTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQ 1307 (1448)
Q Consensus 1231 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~ 1307 (1448)
++|+.|++|+|.+...-++++...++|++|+| .|++..+++..+ ++.|++|.|+.|..- ..-...|..+++|+
T Consensus 293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~----~l~e~af~~lssL~ 368 (873)
T KOG4194|consen 293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID----HLAEGAFVGLSSLH 368 (873)
T ss_pred chhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH----HHHhhHHHHhhhhh
Confidence 66666666666655555556666666666666 555666655544 356666666666422 23334555566666
Q ss_pred EEEEecCCCcCccccccccccCCCCCCCCCcCeEEEccCCCCccccc-cccCCCCCCeEeecCCCCCCcCCCCCC-cccc
Q 048507 1308 HLTIEGCDDDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSS-SIVDLQNLTELRLLNCPKLKYFPEKGL-PSSL 1385 (1448)
Q Consensus 1308 ~L~l~~c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~-~~~L 1385 (1448)
+||+++| .....+.+ ....|..+++|+.|.+.+ ++++++|. .|.+++.|++|++.++. +.++-+..+ +..|
T Consensus 369 ~LdLr~N-~ls~~IED----aa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m~L 441 (873)
T KOG4194|consen 369 KLDLRSN-ELSWCIED----AAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA-IASIQPNAFEPMEL 441 (873)
T ss_pred hhcCcCC-eEEEEEec----chhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCc-ceeecccccccchh
Confidence 6666653 11111111 223445566666666666 45666653 45566666666666533 555444333 3455
Q ss_pred cceecc
Q 048507 1386 LQLSIY 1391 (1448)
Q Consensus 1386 ~~L~i~ 1391 (1448)
++|.+.
T Consensus 442 k~Lv~n 447 (873)
T KOG4194|consen 442 KELVMN 447 (873)
T ss_pred hhhhhc
Confidence 555443
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=4.1e-26 Score=239.75 Aligned_cols=109 Identities=28% Similarity=0.449 Sum_probs=81.0
Q ss_pred chhhhhhhcccCceeEEEeCCCCccccCccccCCccceEEeccCccccccChhhhccccccEEeccCCchhhcccccccc
Q 048507 584 APSILTELFKLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGN 663 (1448)
Q Consensus 584 ~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~i~~ 663 (1448)
...+|+.+.++..++.|+.++|+++++|+.++.+..|+.|+.++|.+.++|++|+.+..|+.|+..+| .+..+|+++++
T Consensus 80 l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~ 158 (565)
T KOG0472|consen 80 LSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVN 158 (565)
T ss_pred hhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccc-ccccCchHHHH
Confidence 34567777777777777777777777777777777777777777777777777777777777777765 56677777777
Q ss_pred cCCCCeeeecCCCCccccccccCcccccccc
Q 048507 664 LAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL 694 (1448)
Q Consensus 664 L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L 694 (1448)
+.+|..|++.+|+ +..+|+..-+++.|++|
T Consensus 159 ~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~l 188 (565)
T KOG0472|consen 159 LSKLSKLDLEGNK-LKALPENHIAMKRLKHL 188 (565)
T ss_pred HHHHHHhhccccc-hhhCCHHHHHHHHHHhc
Confidence 7777777777777 67777665557777666
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=1.8e-21 Score=258.92 Aligned_cols=132 Identities=25% Similarity=0.400 Sum_probs=81.2
Q ss_pred CCcceEeecCCCCccccchhhhhHHHhhhhhhccccceEEecccCCccccccccCccCCcceeeeccCCCCcccCCCCCc
Q 048507 960 CSLKRLTIDSCPTLQSLVAEEEKDQQQQLCELSCRLEYLELNECKGLVKLPQSSLSLSSLREIEICGCSSLVSFPEVALP 1039 (1448)
Q Consensus 960 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~~~~~~~~ 1039 (1448)
.+|+.|.+.++ .++.+|... .+.+|+.|++.+|. +..++..+..+++|+.|++++|..++.+|....+
T Consensus 589 ~~Lr~L~~~~~-~l~~lP~~f----------~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l 656 (1153)
T PLN03210 589 PKLRLLRWDKY-PLRCMPSNF----------RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMA 656 (1153)
T ss_pred cccEEEEecCC-CCCCCCCcC----------CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCccccC
Confidence 34666666664 344444421 13467777777643 5556666666777777777776666666666666
Q ss_pred cccceeEecccCCCCccchhhccCCCCCcceEEEecCCCcccccCCcCCcCccEEEEecCCCCccc
Q 048507 1040 AKLRIISINSCDALKWLPEAWMCDFNSSLEILSIECCRSLTYIAGVQLPPSLKRLYIEFCDNIRTL 1105 (1448)
Q Consensus 1040 ~~L~~L~l~~~~~l~~lp~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l 1105 (1448)
++|+.|++++|..+..+|..+. .+++|+.|++++|..++.++....+++|+.|++++|..++.+
T Consensus 657 ~~Le~L~L~~c~~L~~lp~si~--~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~ 720 (1153)
T PLN03210 657 TNLETLKLSDCSSLVELPSSIQ--YLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSF 720 (1153)
T ss_pred CcccEEEecCCCCccccchhhh--ccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccc
Confidence 7777777777776666666543 466666667766666666655445556666666666554443
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=6.9e-24 Score=246.80 Aligned_cols=459 Identities=23% Similarity=0.256 Sum_probs=258.0
Q ss_pred ccCceeEEEeCCCCccccCccccCCccceEEeccCccccccChhhhccccccEEeccCCchhhcccccccccCCCCeeee
Q 048507 593 KLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 672 (1448)
Q Consensus 593 ~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~~L~~L~l 672 (1448)
+.-+|+.||+++|.+..+|..+..+.+|+.|+++.|.|...|.+++++.+|++|+|.+| .+..+|.++..+++|++|++
T Consensus 43 ~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 43 KRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDL 121 (1081)
T ss_pred heeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhccccccc
Confidence 44459999999999999999999999999999999999999999999999999999985 88999999999999999999
Q ss_pred cCCCCccccccccCcccccccccceecccCCCCCccccccccccCceeEEeecCCccchhhhHHhhcCCCCCCCeEEEEe
Q 048507 673 SNTKSLEEMPVGIGRLTSLQTLCNFVVGQGSGSGLRELKLLTHLHGTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNW 752 (1448)
Q Consensus 673 ~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~ 752 (1448)
++|. ...+|.-+..++.+..+....+.. +..++.. .++.+++..
T Consensus 122 S~N~-f~~~Pl~i~~lt~~~~~~~s~N~~-----~~~lg~~------------------------------~ik~~~l~~ 165 (1081)
T KOG0618|consen 122 SFNH-FGPIPLVIEVLTAEEELAASNNEK-----IQRLGQT------------------------------SIKKLDLRL 165 (1081)
T ss_pred chhc-cCCCchhHHhhhHHHHHhhhcchh-----hhhhccc------------------------------cchhhhhhh
Confidence 9999 788998888887777763221100 0000000 022222222
Q ss_pred ecCCCCCCChhhhhHHhhhccCCCCCCcceeEEeceecCCCCCceEeCccccCCCCCCCCCccceeeccccccccccccC
Q 048507 753 TCSTDGSSSREVETEMGVLDMLKPHTNLEQFCIKGYGVSGMSRVKRLGSEFYGNDSPIPFPCLETLLFENMQEWEDWIPH 832 (1448)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~l~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 832 (1448)
+... ..++.....+.. .|+|..|.+..+ +
T Consensus 166 n~l~-----------~~~~~~i~~l~~--~ldLr~N~~~~~-------------------------d------------- 194 (1081)
T KOG0618|consen 166 NVLG-----------GSFLIDIYNLTH--QLDLRYNEMEVL-------------------------D------------- 194 (1081)
T ss_pred hhcc-----------cchhcchhhhhe--eeecccchhhhh-------------------------h-------------
Confidence 1000 001111111111 344444442210 0
Q ss_pred CCcccCccCcccceeecccCcccccCCCCCCCCccEEEEccccCcccc-cccccccceeecccccceeeecccccCCCcc
Q 048507 833 GFSQGVEGFPKLRELQILSCSKLQGTFPEHLPALEKLVIKGCEELSVL-VSSLPALCKLQIGGCKKVVWRSATDHLGSQN 911 (1448)
Q Consensus 833 ~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~ 911 (1448)
...+++|+.|....+ ++. .+--.-++|+.|+.++|+..... -+.-.+|++++++++....
T Consensus 195 -----ls~~~~l~~l~c~rn-~ls-~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~------------ 255 (1081)
T KOG0618|consen 195 -----LSNLANLEVLHCERN-QLS-ELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN------------ 255 (1081)
T ss_pred -----hhhccchhhhhhhhc-ccc-eEEecCcchheeeeccCcceeeccccccccceeeecchhhhhc------------
Confidence 011222222222211 111 11111233333443333332111 1111233444443332111
Q ss_pred ccccccCCccccccCccccccchhhhhhccccccceeeccCCccccccCCcceEeecCCCCccccchhhhhHHHhhhhhh
Q 048507 912 SVVCRDTSNQVFLAGPLKLRLPKLEELILSTKEQTYIWKSHDGLLQDICSLKRLTIDSCPTLQSLVAEEEKDQQQQLCEL 991 (1448)
Q Consensus 912 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~i~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~ 991 (1448)
.+.+...+.+|+.+...++ .+..++..-+ .
T Consensus 256 ----------------------------------------lp~wi~~~~nle~l~~n~N-~l~~lp~ri~---------~ 285 (1081)
T KOG0618|consen 256 ----------------------------------------LPEWIGACANLEALNANHN-RLVALPLRIS---------R 285 (1081)
T ss_pred ----------------------------------------chHHHHhcccceEecccch-hHHhhHHHHh---------h
Confidence 1133445555666665552 3344433321 2
Q ss_pred ccccceEEecccCCccccccccCccCCcceeeeccCCCCcccCCCCC---ccccceeEecccCCCCccchhhccCCCCCc
Q 048507 992 SCRLEYLELNECKGLVKLPQSSLSLSSLREIEICGCSSLVSFPEVAL---PAKLRIISINSCDALKWLPEAWMCDFNSSL 1068 (1448)
Q Consensus 992 ~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~~~~~~~---~~~L~~L~l~~~~~l~~lp~~~~~~~~~~L 1068 (1448)
..+|+.|.+.. +.+..+|+....+++|++|++..| .+.++|...+ ..+|..|+.+.+. +...| .+....++.|
T Consensus 286 ~~~L~~l~~~~-nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~-l~~lp-~~~e~~~~~L 361 (1081)
T KOG0618|consen 286 ITSLVSLSAAY-NELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNK-LSTLP-SYEENNHAAL 361 (1081)
T ss_pred hhhHHHHHhhh-hhhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhcc-ccccc-cccchhhHHH
Confidence 24666777666 456777777777888888888885 6667765222 2335556655433 44444 2333346667
Q ss_pred ceEEEecCCCcc-cccCCcCCcCccEEEEecCCCCcccccccccccccCCccCCCCccceeeccCCCCcccccccCCCch
Q 048507 1069 EILSIECCRSLT-YIAGVQLPPSLKRLYIEFCDNIRTLTVEEGVQRSSSSRRCTSSLLEELDINSCPSLTCIFSKNELPA 1147 (1448)
Q Consensus 1069 ~~L~l~~c~~l~-~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~ 1147 (1448)
+.|++.+|..-. .++.+....+|+.|+++++. +.++| -+.
T Consensus 362 q~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fp-----------------------as~--------------- 402 (1081)
T KOG0618|consen 362 QELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFP-----------------------ASK--------------- 402 (1081)
T ss_pred HHHHHhcCcccccchhhhccccceeeeeecccc-cccCC-----------------------HHH---------------
Confidence 777776654222 23444455566666666552 11111 011
Q ss_pred hhhccccCCCCccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCcc-ccCCC
Q 048507 1148 TLESLEVGNLPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLV-SFPKG 1226 (1448)
Q Consensus 1148 ~l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~-~lp~~ 1226 (1448)
+. ++ +.|+.|+|++| .+..+|..+.++..|++|...+|.+. ..| .+..++.|+.+|++.|+... .+|.
T Consensus 403 -~~-----kl-e~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~- 471 (1081)
T KOG0618|consen 403 -LR-----KL-EELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPE- 471 (1081)
T ss_pred -Hh-----ch-HHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhh-
Confidence 11 11 27888888886 45667788888888888888776544 355 67788888888888654332 2232
Q ss_pred CCCCCCccEEEecCccCccccccccCCCCcccceec
Q 048507 1227 GLPGAKLTRLEISDCNRLEALPKGLHNLKSLQELRI 1262 (1448)
Q Consensus 1227 ~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l 1262 (1448)
..+.++|++||++||.....--..|..+.++..+++
T Consensus 472 ~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i 507 (1081)
T KOG0618|consen 472 ALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDI 507 (1081)
T ss_pred hCCCcccceeeccCCcccccchhhhHHhhhhhheec
Confidence 233478888888888753322223444444444444
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=1.1e-22 Score=223.89 Aligned_cols=340 Identities=19% Similarity=0.207 Sum_probs=225.3
Q ss_pred cccceEEecccCCccccccccCccCCcceeeeccCCCCcccCC--CCCccccceeEecccCCCCccchhhccCCCCCcce
Q 048507 993 CRLEYLELNECKGLVKLPQSSLSLSSLREIEICGCSSLVSFPE--VALPAKLRIISINSCDALKWLPEAWMCDFNSSLEI 1070 (1448)
Q Consensus 993 ~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~L~~ 1070 (1448)
++|+.+++.+ +.++.+|.......+|+.|+|.+| .+.++.. ...++.|+.|||+.|. +..+|...+. .-.++++
T Consensus 102 ~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLSrN~-is~i~~~sfp-~~~ni~~ 177 (873)
T KOG4194|consen 102 PNLQEVNLNK-NELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLSRNL-ISEIPKPSFP-AKVNIKK 177 (873)
T ss_pred Ccceeeeecc-chhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhhhch-hhcccCCCCC-CCCCceE
Confidence 4555555555 444555544444444555555553 3333332 3345555555555533 3333322211 1245556
Q ss_pred EEEecCCCccccc--CCcCCcCccEEEEecCCCCcccccccccccccCCccCCCCccceeeccCCCCcccccccCCCchh
Q 048507 1071 LSIECCRSLTYIA--GVQLPPSLKRLYIEFCDNIRTLTVEEGVQRSSSSRRCTSSLLEELDINSCPSLTCIFSKNELPAT 1148 (1448)
Q Consensus 1071 L~l~~c~~l~~~~--~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~ 1148 (1448)
|+|++|. ++.+. .+..+.+|-.|.++.+. ++.+|.. .+.+++.|+.|++....- + -
T Consensus 178 L~La~N~-It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r---------~Fk~L~~L~~LdLnrN~i-r----------i 235 (873)
T KOG4194|consen 178 LNLASNR-ITTLETGHFDSLNSLLTLKLSRNR-ITTLPQR---------SFKRLPKLESLDLNRNRI-R----------I 235 (873)
T ss_pred Eeecccc-ccccccccccccchheeeecccCc-ccccCHH---------Hhhhcchhhhhhccccce-e----------e
Confidence 6665543 33222 22333455555555542 2222211 112245566666654321 1 1
Q ss_pred hhccccCCCCccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCC
Q 048507 1149 LESLEVGNLPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGL 1228 (1448)
Q Consensus 1149 l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~ 1228 (1448)
...+.+.+++ +|+.|.+..|.....-...|..|.++++|+|+.|+....-..++.+|++|+.|++++|.....-+.++.
T Consensus 236 ve~ltFqgL~-Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 236 VEGLTFQGLP-SLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred ehhhhhcCch-hhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence 1223444555 999999999988777778899999999999999998887778899999999999999766555566677
Q ss_pred CCCCccEEEecCccCccccccccCCCCcccceec-ccCCCccccCCC--CCccceeeecccccccccccccCCccccCCC
Q 048507 1229 PGAKLTRLEISDCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGL--PTNLHSLGIRGNMEIWKSTIERGRGFHRFSS 1305 (1448)
Q Consensus 1229 ~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~ 1305 (1448)
-+++|++|+|++|.+..--+..|..|..|++|.| +|.+..+.+..| ..+|+.|||+.|...|.... -...|..+++
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED-aa~~f~gl~~ 393 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED-AAVAFNGLPS 393 (873)
T ss_pred hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec-chhhhccchh
Confidence 7899999999998866655677999999999999 888888887654 69999999999976543322 2346788999
Q ss_pred ccEEEEecCCCcCccccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecC
Q 048507 1306 LQHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLN 1369 (1448)
Q Consensus 1306 L~~L~l~~c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~ 1369 (1448)
|+.|++.+ |.+.++|.. +|..+++|+.|+|.+|..-..-|..|..+ .|+.|.+..
T Consensus 394 LrkL~l~g--Nqlk~I~kr------Afsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 394 LRKLRLTG--NQLKSIPKR------AFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hhheeecC--ceeeecchh------hhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 99999998 578888854 58899999999999965444446677777 888887654
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=5.2e-22 Score=219.29 Aligned_cols=325 Identities=20% Similarity=0.274 Sum_probs=200.4
Q ss_pred CccccccCCcceEeecCCCCccccchhhhhHHHhhhhhhccccceEEecccCCcc-ccccccCccCCcceeeeccCCCCc
Q 048507 953 DGLLQDICSLKRLTIDSCPTLQSLVAEEEKDQQQQLCELSCRLEYLELNECKGLV-KLPQSSLSLSSLREIEICGCSSLV 1031 (1448)
Q Consensus 953 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~-~lp~~~~~l~~L~~L~L~~c~~l~ 1031 (1448)
+.-++.+.+|++|.++++. +.++-.+ ..-.|+|+.+.+..|+.-. .+|..+..+..|..||||+| .++
T Consensus 48 PeEL~~lqkLEHLs~~HN~-L~~vhGE---------Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~ 116 (1255)
T KOG0444|consen 48 PEELSRLQKLEHLSMAHNQ-LISVHGE---------LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLR 116 (1255)
T ss_pred hHHHHHHhhhhhhhhhhhh-hHhhhhh---------hccchhhHHHhhhccccccCCCCchhcccccceeeecchh-hhh
Confidence 3445677777888777743 3332221 1124678888887755433 57777888888888888885 666
Q ss_pred ccCC-CCCccccceeEecccCCCCccchhhccCCCCCcceEEEecCCCccccc-CCcCCcCccEEEEecCCCCccccccc
Q 048507 1032 SFPE-VALPAKLRIISINSCDALKWLPEAWMCDFNSSLEILSIECCRSLTYIA-GVQLPPSLKRLYIEFCDNIRTLTVEE 1109 (1448)
Q Consensus 1032 ~~~~-~~~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~L~~L~l~~~~~l~~l~~~~ 1109 (1448)
..|. ...-.++-+|+|++|+ +..+|..... +++.|-.|+||+|. +..+| ....+..|+.|.+++++
T Consensus 117 EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfi-nLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NP--------- 184 (1255)
T KOG0444|consen 117 EVPTNLEYAKNSIVLNLSYNN-IETIPNSLFI-NLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNP--------- 184 (1255)
T ss_pred hcchhhhhhcCcEEEEcccCc-cccCCchHHH-hhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCCh---------
Confidence 6664 4456777888888854 6677766554 67777788888764 34333 22344566666666664
Q ss_pred ccccccCCccCCCCccceeeccCCCCcccccccCCCchhhhccccCCCCccccEEEEecCCC-chhhhhhcccCCcccee
Q 048507 1110 GVQRSSSSRRCTSSLLEELDINSCPSLTCIFSKNELPATLESLEVGNLPESLKSLRVWDCPK-LESIAERLDNNTSLEII 1188 (1448)
Q Consensus 1110 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~L~~L 1188 (1448)
|....+...|.++ +|+.|++++.+. +..+|..+.++.+|..+
T Consensus 185 ---------------L~hfQLrQLPsmt----------------------sL~vLhms~TqRTl~N~Ptsld~l~NL~dv 227 (1255)
T KOG0444|consen 185 ---------------LNHFQLRQLPSMT----------------------SLSVLHMSNTQRTLDNIPTSLDDLHNLRDV 227 (1255)
T ss_pred ---------------hhHHHHhcCccch----------------------hhhhhhcccccchhhcCCCchhhhhhhhhc
Confidence 2222222323222 566666665443 34566777777777777
Q ss_pred eecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEecCccCccccccccCCCCcccceecc-cCCC
Q 048507 1189 RIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEISDCNRLEALPKGLHNLKSLQELRIG-VELP 1267 (1448)
Q Consensus 1189 ~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~-~~l~ 1267 (1448)
|+|.|+ +..+|..+.++++|+.|+|++| .++.+..+...+.+|++|++|.|. +..+|..+..|+.|+.|++. |.+.
T Consensus 228 DlS~N~-Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 228 DLSENN-LPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred cccccC-CCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCccc
Confidence 777643 4446677777777777777774 455565555556677777777754 56677777777777777773 3221
Q ss_pred --cccc-CCCCCccceeeecccccccccccccCCccccCCCccEEEEecCCCcCccccccccccCCCCCCCCCcCeEEEc
Q 048507 1268 --SLEE-DGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTTLWIY 1344 (1448)
Q Consensus 1268 --~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~ 1344 (1448)
.+|. .+-+.+|+.+..++|.. ...|.++.++..|+.|.+++ |.+.++|+. +..++-|+.|++.
T Consensus 305 FeGiPSGIGKL~~Levf~aanN~L-----ElVPEglcRC~kL~kL~L~~--NrLiTLPea-------IHlL~~l~vLDlr 370 (1255)
T KOG0444|consen 305 FEGIPSGIGKLIQLEVFHAANNKL-----ELVPEGLCRCVKLQKLKLDH--NRLITLPEA-------IHLLPDLKVLDLR 370 (1255)
T ss_pred ccCCccchhhhhhhHHHHhhcccc-----ccCchhhhhhHHHHHhcccc--cceeechhh-------hhhcCCcceeecc
Confidence 1111 12234455555555431 34556777788888888876 456666643 4677778888888
Q ss_pred cCCCCccccc
Q 048507 1345 NFPNLERLSS 1354 (1448)
Q Consensus 1345 ~~~~l~~lp~ 1354 (1448)
+|+++.--|.
T Consensus 371 eNpnLVMPPK 380 (1255)
T KOG0444|consen 371 ENPNLVMPPK 380 (1255)
T ss_pred CCcCccCCCC
Confidence 8777765553
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=1.8e-21 Score=215.15 Aligned_cols=145 Identities=18% Similarity=0.246 Sum_probs=113.3
Q ss_pred cceeeEEEeccCcccccchhhhccccccEeeccccccCCCCCCchhhhhhhcccCceeEEEeCCCCccccCccccCCccc
Q 048507 541 NLRHLSYIRGDYDGVQRFEKLYDIQHLRTFLPVMLSNSLHGYLAPSILTELFKLQRLRVFSLRGYRIDELPDSIGDLRYF 620 (1448)
Q Consensus 541 ~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L 620 (1448)
-+|.+.+.++++.+...+..+..+..++-|.... .....+|..+.++.+|+.|.+++|++.++-..++.|+.|
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr-------t~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~L 80 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR-------TKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRL 80 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEech-------hhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhh
Confidence 3566666677666554455566677777664321 223467888889999999999999988888888888999
Q ss_pred eEEeccCcccc--ccChhhhccccccEEeccCCchhhcccccccccCCCCeeeecCCCCccccccc-cCcccccccc
Q 048507 621 RYLNLSGTEIR--TLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVG-IGRLTSLQTL 694 (1448)
Q Consensus 621 ~~L~Ls~n~i~--~lp~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L 694 (1448)
|.+++++|+++ .+|+.|..|..|.+|||++| .+.+.|..+..-+++-+|+||+|+ +..+|.. +.+|+.|-.|
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFL 155 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhh
Confidence 99999999887 78888999999999999985 788889989888999999999988 8888866 5567666666
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.52 E-value=8.7e-14 Score=170.43 Aligned_cols=56 Identities=34% Similarity=0.594 Sum_probs=38.3
Q ss_pred CCccEEEEecCCCcCccccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCCCC
Q 048507 1304 SSLQHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPK 1372 (1448)
Q Consensus 1304 ~~L~~L~l~~c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~ 1372 (1448)
++|+.|++++| .+..+|. .+.+|+.|++++ ++++.+|..+.++++|+.|++++|+.
T Consensus 402 s~L~~LdLS~N--~LssIP~----------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 402 SELKELMVSGN--RLTSLPM----------LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred cCCCEEEccCC--cCCCCCc----------chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCCC
Confidence 46777777773 3455552 234677777877 45777888778888888888888663
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.47 E-value=2e-13 Score=167.24 Aligned_cols=79 Identities=19% Similarity=0.235 Sum_probs=63.7
Q ss_pred CceeEEEeCCCCccccCccccCCccceEEeccCccccccChhhhccccccEEeccCCchhhcccccccccCCCCeeeecC
Q 048507 595 QRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSN 674 (1448)
Q Consensus 595 ~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~~L~~L~l~~ 674 (1448)
..-.+|+|+++.++.+|+.+. .+|+.|++++|+++.+|.. +++|++|+|++| .+..+|.. .++|+.|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence 456789999999999998876 4899999999999999863 578999999986 56677753 46788889988
Q ss_pred CCCcccccc
Q 048507 675 TKSLEEMPV 683 (1448)
Q Consensus 675 ~~~l~~~p~ 683 (1448)
|. +..+|.
T Consensus 272 N~-L~~Lp~ 279 (788)
T PRK15387 272 NP-LTHLPA 279 (788)
T ss_pred Cc-hhhhhh
Confidence 88 677764
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.46 E-value=1.3e-14 Score=154.02 Aligned_cols=97 Identities=25% Similarity=0.371 Sum_probs=60.4
Q ss_pred eeEEEeCCCCccccC-ccccCCccceEEeccCcccccc-ChhhhccccccEEeccCCchhhccccc-ccccCCCCeeeec
Q 048507 597 LRVFSLRGYRIDELP-DSIGDLRYFRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLAKLHHLKNS 673 (1448)
Q Consensus 597 L~~L~L~~n~i~~lp-~~i~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~lp~~-i~~L~~L~~L~l~ 673 (1448)
-..++|..|.|+.|| ..|+.+++||.||||+|+|+.| |.+|.+|..|..|.+.+|+.+..+|.+ |++|..|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 345666677777765 3566677777777777777644 566777776666666665566666654 5666666666666
Q ss_pred CCCCccccccc-cCcccccccc
Q 048507 674 NTKSLEEMPVG-IGRLTSLQTL 694 (1448)
Q Consensus 674 ~~~~l~~~p~~-i~~L~~L~~L 694 (1448)
-|+ +.-++.+ +..|++|..|
T Consensus 149 an~-i~Cir~~al~dL~~l~lL 169 (498)
T KOG4237|consen 149 ANH-INCIRQDALRDLPSLSLL 169 (498)
T ss_pred hhh-hcchhHHHHHHhhhcchh
Confidence 666 4444433 5555555555
No 18
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.37 E-value=3.5e-11 Score=161.21 Aligned_cols=293 Identities=15% Similarity=0.185 Sum_probs=182.7
Q ss_pred cCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCC-ccCHHHHHHH
Q 048507 187 EAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSD-DFDVKGLTKT 265 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~ 265 (1448)
...+|-|..-.+.+.+ ....+++.|+|++|.||||++...... ++.++|+++.. ..++..+...
T Consensus 13 ~~~~~~R~rl~~~l~~---------~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~ 77 (903)
T PRK04841 13 LHNTVVRERLLAKLSG---------ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASY 77 (903)
T ss_pred ccccCcchHHHHHHhc---------ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHH
Confidence 3456777655554432 125689999999999999999998752 12589999864 4466666677
Q ss_pred HHHhccCCCCC-------------CCCHHHHHHHHHHHhC--CccEEEEEecCCCCChhhHhhhcccc-cCCCCCcEEEE
Q 048507 266 ILRSVTKQTID-------------DSDLNLLQEELKKKLS--QKKFLLVLDDVWNENYNDWVRLSRPF-EAGAPGSKIIV 329 (1448)
Q Consensus 266 i~~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~~l~~~l-~~~~~gs~ilv 329 (1448)
++..+...... ..+...+...+...+. +.+++||+||+...+......+...+ .....+.++||
T Consensus 78 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~ 157 (903)
T PRK04841 78 LIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVV 157 (903)
T ss_pred HHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEE
Confidence 77666421110 1222333333333332 67999999999765433333333332 23345678889
Q ss_pred EcCchhhhh--cc-CCcceEeCC----CCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCchHHHHHHHhhhccCCCh
Q 048507 330 TTRNQEVAD--IM-GTASAYQLK----KLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGLPLAAQTLGGLLRGKCDR 402 (1448)
Q Consensus 330 TtR~~~v~~--~~-~~~~~~~l~----~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~ 402 (1448)
|||...... .+ ......++. +|+.+|+.++|...... ....+.+.+|.+.|+|.|+++..++..++.....
T Consensus 158 ~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~--~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~ 235 (903)
T PRK04841 158 LSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS--PIEAAESSRLCDDVEGWATALQLIALSARQNNSS 235 (903)
T ss_pred EeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC--CCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc
Confidence 999742211 11 112345555 99999999999865332 2245667889999999999999998777543211
Q ss_pred hHHHHHHhccccCCCC-cccchhhHHHH-hhhcCChhhHHHHhhhcccCCCceeCHHHHHHHHHHcCCCcCCCCCCChHH
Q 048507 403 SDWEDLLSCKIWNLPE-ERCDIIPALRV-SYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKESGNPNED 480 (1448)
Q Consensus 403 ~~w~~~~~~~~~~~~~-~~~~i~~~l~~-sy~~L~~~~k~~f~~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~ 480 (1448)
. .... +.... ....+...+.- .++.||++.++.+...|+++ .++.+. .. .+.. .+
T Consensus 236 ~--~~~~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l-~~-----~l~~--------~~ 292 (903)
T PRK04841 236 L--HDSA----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDAL-IV-----RVTG--------EE 292 (903)
T ss_pred h--hhhh----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHH-HH-----HHcC--------CC
Confidence 0 0001 11111 11235554433 48899999999999999986 334332 21 1111 12
Q ss_pred HHHHHHHHHHhCCcccc-cCCCcceEEEeHHHHHHHHHHh
Q 048507 481 LGRKFFQELRGRSFFQQ-SSNNISRFVMHDLINDLARWAA 519 (1448)
Q Consensus 481 ~~~~~~~~L~~~sll~~-~~~~~~~~~mH~lv~~~a~~~~ 519 (1448)
.+...+++|.+.+++.. .+++...|.+|++++++.+...
T Consensus 293 ~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 293 NGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred cHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 24678999999999764 3434457899999999998765
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.31 E-value=6e-14 Score=130.98 Aligned_cols=103 Identities=26% Similarity=0.409 Sum_probs=63.5
Q ss_pred hcccCceeEEEeCCCCccccCccccCCccceEEeccCccccccChhhhccccccEEeccCCchhhcccccccccCCCCee
Q 048507 591 LFKLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHL 670 (1448)
Q Consensus 591 ~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~~L~~L 670 (1448)
++.+.++..|-|++|.++.+|..|..|.+|++|++++|+|+.+|.+++.|++|++|+++-| .+..+|.+||.++.|++|
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVL 107 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhh
Confidence 4455555666666666666666666666666666666666666666666666666666653 555666666666666666
Q ss_pred eecCCCCc-cccccccCcccccccc
Q 048507 671 KNSNTKSL-EEMPVGIGRLTSLQTL 694 (1448)
Q Consensus 671 ~l~~~~~l-~~~p~~i~~L~~L~~L 694 (1448)
|+..|+.- ..+|..|..|+.|+.|
T Consensus 108 dltynnl~e~~lpgnff~m~tlral 132 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRAL 132 (264)
T ss_pred hccccccccccCCcchhHHHHHHHH
Confidence 66666522 2345555556655555
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.28 E-value=8.1e-12 Score=154.75 Aligned_cols=90 Identities=21% Similarity=0.380 Sum_probs=62.1
Q ss_pred CceeEEEeCCCCccccCccccCCccceEEeccCccccccChhhhccccccEEeccCCchhhcccccccccCCCCeeeecC
Q 048507 595 QRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSN 674 (1448)
Q Consensus 595 ~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~~L~~L~l~~ 674 (1448)
.+...|+++++.++.+|..+. .+|+.|+|++|+|+.+|..+. .+|++|++++| .+..+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence 456778888888887777664 477888888888888876654 47888888876 4566776553 3678888888
Q ss_pred CCCccccccccCcccccccc
Q 048507 675 TKSLEEMPVGIGRLTSLQTL 694 (1448)
Q Consensus 675 ~~~l~~~p~~i~~L~~L~~L 694 (1448)
|. +..+|..+. ++|+.|
T Consensus 251 N~-L~~LP~~l~--s~L~~L 267 (754)
T PRK15370 251 NR-ITELPERLP--SALQSL 267 (754)
T ss_pred Cc-cCcCChhHh--CCCCEE
Confidence 77 667775543 345544
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.28 E-value=1e-11 Score=153.93 Aligned_cols=202 Identities=21% Similarity=0.290 Sum_probs=130.3
Q ss_pred ccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEe
Q 048507 1159 ESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEI 1238 (1448)
Q Consensus 1159 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l 1238 (1448)
++|++|++++|... .+|..+. .+|+.|+|++|.+. .+|..+. .+|+.|++++| .+..+|..+. ++|+.|++
T Consensus 220 ~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~L 290 (754)
T PRK15370 220 GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSV 290 (754)
T ss_pred cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEEC
Confidence 47888888877543 4555432 46788888887655 5665553 47888888764 4556776543 47888888
Q ss_pred cCccCccccccccCCCCcccceec-ccCCCccccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecCCCc
Q 048507 1239 SDCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDD 1317 (1448)
Q Consensus 1239 ~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~ 1317 (1448)
++|+ +..+|..+. ++|+.|++ +|.+..+|. .++++|+.|++++|... . .+..+ .++|+.|++++| .
T Consensus 291 s~N~-Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~-~l~~sL~~L~Ls~N~Lt----~-LP~~l--~~sL~~L~Ls~N--~ 357 (754)
T PRK15370 291 YDNS-IRTLPAHLP--SGITHLNVQSNSLTALPE-TLPPGLKTLEAGENALT----S-LPASL--PPELQVLDVSKN--Q 357 (754)
T ss_pred CCCc-cccCcccch--hhHHHHHhcCCccccCCc-cccccceeccccCCccc----c-CChhh--cCcccEEECCCC--C
Confidence 8865 445665443 46777777 566665553 34577888888887532 1 12223 267888888875 3
Q ss_pred CccccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCCCC-----CCcccccceeccC
Q 048507 1318 MVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFPEK-----GLPSSLLQLSIYR 1392 (1448)
Q Consensus 1318 ~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~-----~~~~~L~~L~i~~ 1392 (1448)
+..+|.. .+++|+.|+|++| .+..+|..+. ..|+.|++++| ++..+|.. +..+++..|++.+
T Consensus 358 L~~LP~~---------lp~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~ 424 (754)
T PRK15370 358 ITVLPET---------LPPTITTLDVSRN-ALTNLPENLP--AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEY 424 (754)
T ss_pred CCcCChh---------hcCCcCEEECCCC-cCCCCCHhHH--HHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeC
Confidence 4455532 2467888888885 5667776553 36888888884 46777753 1235677888888
Q ss_pred Cch
Q 048507 1393 CPL 1395 (1448)
Q Consensus 1393 c~~ 1395 (1448)
+|.
T Consensus 425 Npl 427 (754)
T PRK15370 425 NPF 427 (754)
T ss_pred CCc
Confidence 875
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.25 E-value=1.5e-13 Score=128.28 Aligned_cols=111 Identities=27% Similarity=0.392 Sum_probs=101.4
Q ss_pred chhhhhhhcccCceeEEEeCCCCccccCccccCCccceEEeccCccccccChhhhccccccEEeccCCchh-hccccccc
Q 048507 584 APSILTELFKLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRL-KKLCADMG 662 (1448)
Q Consensus 584 ~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~-~~lp~~i~ 662 (1448)
...+|+.+..+.+|++|++.+|+|+++|.+++.++.|+.|+++-|++..+|..|+.++.|++|||.+|+.. ..+|..|-
T Consensus 45 l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff 124 (264)
T KOG0617|consen 45 LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFF 124 (264)
T ss_pred eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchh
Confidence 44578888999999999999999999999999999999999999999999999999999999999998654 46899999
Q ss_pred ccCCCCeeeecCCCCccccccccCccccccccc
Q 048507 663 NLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLC 695 (1448)
Q Consensus 663 ~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~ 695 (1448)
.|+.|+-|++++|. .+-+|.++++|++||.|.
T Consensus 125 ~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~ 156 (264)
T KOG0617|consen 125 YMTTLRALYLGDND-FEILPPDVGKLTNLQILS 156 (264)
T ss_pred HHHHHHHHHhcCCC-cccCChhhhhhcceeEEe
Confidence 99999999999999 789999999999999984
No 23
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.19 E-value=2.3e-09 Score=127.89 Aligned_cols=295 Identities=14% Similarity=0.078 Sum_probs=175.5
Q ss_pred ccCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHH
Q 048507 186 TEAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKT 265 (1448)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 265 (1448)
.++.++||++|++++...+...- .......+.|+|++|+|||++++.++++.......-.++++++....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~--~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPAL--RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHh--CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 45679999999999999985532 1223456789999999999999999985433322345677888877788899999
Q ss_pred HHHhccCCCC--CCCCHHHHHHHHHHHhC--CccEEEEEecCCCCC----hhhHhhhcccccCCCCCcE--EEEEcCchh
Q 048507 266 ILRSVTKQTI--DDSDLNLLQEELKKKLS--QKKFLLVLDDVWNEN----YNDWVRLSRPFEAGAPGSK--IIVTTRNQE 335 (1448)
Q Consensus 266 i~~~l~~~~~--~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~----~~~~~~l~~~l~~~~~gs~--ilvTtR~~~ 335 (1448)
+++++..... ...+.+++.+.+.+.++ +++.+||+|+++... .+.+..+...+... .+++ +|.++....
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGISSDLT 184 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEECCcc
Confidence 9999875322 23345666677777664 456899999996532 22333443332221 2323 556655543
Q ss_pred hhhccC-------CcceEeCCCCCHHHHHHHHhhcccC---CchhhHHHHHHHHHhc----CCchHHHHHHHhhh--c--
Q 048507 336 VADIMG-------TASAYQLKKLSIDDCLAVVAQHSLG---SDKLLEEIGKKIVAKC----DGLPLAAQTLGGLL--R-- 397 (1448)
Q Consensus 336 v~~~~~-------~~~~~~l~~l~~~~a~~l~~~~~~~---~~~~~~~~~~~i~~~~----~g~PLal~~~~~~l--~-- 397 (1448)
+..... ....+.+++++.++..+++..++.. .....+++.+.|++.+ |..+.|+.++-.+. .
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 322211 1246789999999999998876521 2222334444454444 55777777664322 1
Q ss_pred -cCC--ChhHHHHHHhccccCCCCcccchhhHHHHhhhcCChhhHHHHhhhcccCC--CceeCHHHHHHH--HHHcCCCc
Q 048507 398 -GKC--DRSDWEDLLSCKIWNLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPK--DYEFEEEEIILL--WCASGFLD 470 (1448)
Q Consensus 398 -~~~--~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp~--~~~i~~~~li~~--w~~~g~~~ 470 (1448)
+.. +.+....+.... -.....-.+..||.+.|..+..++..-+ ...+....+... .+++.+-.
T Consensus 265 ~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred cCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 111 233444433311 1223445678999998887776654321 123454444432 22222110
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCcccc
Q 048507 471 HKESGNPNEDLGRKFFQELRGRSFFQQ 497 (1448)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~L~~~sll~~ 497 (1448)
. ........+|+..|...++|..
T Consensus 335 ~----~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 335 E----PRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred C----cCcHHHHHHHHHHHHhcCCeEE
Confidence 0 1122445678999999999875
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.12 E-value=3.7e-11 Score=151.37 Aligned_cols=124 Identities=31% Similarity=0.383 Sum_probs=97.7
Q ss_pred ccCceeEEEeCCCC--ccccCcc-ccCCccceEEeccCc-cccccChhhhccccccEEeccCCchhhcccccccccCCCC
Q 048507 593 KLQRLRVFSLRGYR--IDELPDS-IGDLRYFRYLNLSGT-EIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLH 668 (1448)
Q Consensus 593 ~l~~L~~L~L~~n~--i~~lp~~-i~~l~~L~~L~Ls~n-~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~~L~ 668 (1448)
..+.|++|-+.+|. +..++.. |..++.|++|||++| .+..+|++|++|.+||+|+|+++ .+..+|.++++|++|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhh
Confidence 44579999999886 6777654 688999999999987 57799999999999999999994 7889999999999999
Q ss_pred eeeecCCCCccccccccCcccccccccceecc-cCCCCCccccccccccC
Q 048507 669 HLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVG-QGSGSGLRELKLLTHLH 717 (1448)
Q Consensus 669 ~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~-~~~~~~~~~L~~L~~L~ 717 (1448)
+|++..+..+..+|..+..|++||+|..+... ..+...+.++..|.+|.
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~ 671 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE 671 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchh
Confidence 99999988666666556679999999765554 22333444444444444
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.11 E-value=3.8e-12 Score=135.60 Aligned_cols=230 Identities=19% Similarity=0.249 Sum_probs=167.9
Q ss_pred CCCCccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCC-CCCCc
Q 048507 1155 GNLPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGL-PGAKL 1233 (1448)
Q Consensus 1155 ~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~-~~~~L 1233 (1448)
.++|+....++|..|.+...-+.+|+.+++|+.||||+|++...-|..|.++++|.+|-+.+++.++.+|.+.+ .+.+|
T Consensus 63 ~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 63 ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred ccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 45678899999999988777778999999999999999999888899999999999999999999999998644 36677
Q ss_pred cEEEecCccCccccccccCCCCcccceec-ccCCCccccCCC--CCccceeeeccccccc--------------------
Q 048507 1234 TRLEISDCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGL--PTNLHSLGIRGNMEIW-------------------- 1290 (1448)
Q Consensus 1234 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~--~~~L~~L~l~~n~~~~-------------------- 1290 (1448)
+-|.+.-|...-...+.|..+++|..|.+ .|.+..+....+ ..+++.+.+..|+.+.
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg 222 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG 222 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence 77777776655555556677777777766 455444444333 2344444444444111
Q ss_pred --------------------------------------ccccccCCccccCCCccEEEEecCCCcCccccccccccCCCC
Q 048507 1291 --------------------------------------KSTIERGRGFHRFSSLQHLTIEGCDDDMVSFPLEDKRLGTAL 1332 (1448)
Q Consensus 1291 --------------------------------------~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~p~~~~~~~~~~ 1332 (1448)
.....+..-|..|++|++|++++ |.+..+.+. +|
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn--N~i~~i~~~------aF 294 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN--NKITRIEDG------AF 294 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC--Cccchhhhh------hh
Confidence 00111222367889999999998 455555543 47
Q ss_pred CCCCCcCeEEEccCCCCcccccc-ccCCCCCCeEeecCCCCCCcCCCCCC--cccccceeccCCc
Q 048507 1333 PLPASLTTLWIYNFPNLERLSSS-IVDLQNLTELRLLNCPKLKYFPEKGL--PSSLLQLSIYRCP 1394 (1448)
Q Consensus 1333 ~~~~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~~~--~~~L~~L~i~~c~ 1394 (1448)
.....++.|.|.. ++++.+... |.++..|+.|++++ ++++.+.+..+ ..+|.+|.+-.+|
T Consensus 295 e~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 295 EGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYD-NQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred cchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecC-CeeEEEecccccccceeeeeehccCc
Confidence 7888999999988 577777653 57899999999999 45888776544 5788999988766
No 26
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.11 E-value=3.7e-09 Score=125.28 Aligned_cols=297 Identities=18% Similarity=0.216 Sum_probs=190.7
Q ss_pred cCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCc-cCHHHHHHH
Q 048507 187 EAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDD-FDVKGLTKT 265 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~ 265 (1448)
....|-|. ++.+.|.. ..+.+.+.|..++|.||||++.+.+. ....=..+.|.++... .++..+...
T Consensus 18 ~~~~v~R~----rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~rF~~y 85 (894)
T COG2909 18 PDNYVVRP----RLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPARFLSY 85 (894)
T ss_pred cccccccH----HHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCccCCHHHHHHH
Confidence 34455554 45555533 23689999999999999999999875 1222345899998765 467777888
Q ss_pred HHHhccCCCCC-------------CCCHHHHHHHHHHHhC--CccEEEEEecCCCCChhhHhh-hcccccCCCCCcEEEE
Q 048507 266 ILRSVTKQTID-------------DSDLNLLQEELKKKLS--QKKFLLVLDDVWNENYNDWVR-LSRPFEAGAPGSKIIV 329 (1448)
Q Consensus 266 i~~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~~-l~~~l~~~~~gs~ilv 329 (1448)
++..++...+. ..+...+.+.+...+. .++..+||||..-........ +...+.....+-..+|
T Consensus 86 Li~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv 165 (894)
T COG2909 86 LIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVV 165 (894)
T ss_pred HHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEE
Confidence 88777643221 2233344444444443 568999999986554333333 2222334556889999
Q ss_pred EcCchhhhhc--cC-CcceEeCC----CCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCchHHHHHHHhhhccCCCh
Q 048507 330 TTRNQEVADI--MG-TASAYQLK----KLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGLPLAAQTLGGLLRGKCDR 402 (1448)
Q Consensus 330 TtR~~~v~~~--~~-~~~~~~l~----~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~ 402 (1448)
|||...-... +. ....+++. .++.+|+.++|.... +.+.....++.+.+..+|-+-|+..++-.+++..+.
T Consensus 166 ~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~--~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~ 243 (894)
T COG2909 166 TSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG--SLPLDAADLKALYDRTEGWAAALQLIALALRNNTSA 243 (894)
T ss_pred EeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC--CCCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcH
Confidence 9998643211 11 11233332 478999999998763 334446678899999999999999999888844333
Q ss_pred hHHHHHHhccccCCCCcccchhh-HHHHhhhcCChhhHHHHhhhcccCCCceeCHHHHHHHHHHcCCCcCCCCCCChHHH
Q 048507 403 SDWEDLLSCKIWNLPEERCDIIP-ALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKESGNPNEDL 481 (1448)
Q Consensus 403 ~~w~~~~~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~k~~f~~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~ 481 (1448)
+.--..+ .+...-+.. ...--++.||+++|.-++.+|+++.- -++++..-. -++.
T Consensus 244 ~q~~~~L-------sG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~Lt-------------g~~n 299 (894)
T COG2909 244 EQSLRGL-------SGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNALT-------------GEEN 299 (894)
T ss_pred HHHhhhc-------cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHHh-------------cCCc
Confidence 2222111 111111211 12345789999999999999998542 233333221 1244
Q ss_pred HHHHHHHHHhCCcccc-cCCCcceEEEeHHHHHHHHHHhcc
Q 048507 482 GRKFFQELRGRSFFQQ-SSNNISRFVMHDLINDLARWAAGE 521 (1448)
Q Consensus 482 ~~~~~~~L~~~sll~~-~~~~~~~~~mH~lv~~~a~~~~~~ 521 (1448)
+...+++|.+++++-. -++....|+.|.+..||.+.....
T Consensus 300 g~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 300 GQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 6778999999998864 455567999999999999865544
No 27
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.07 E-value=2.3e-08 Score=118.12 Aligned_cols=297 Identities=11% Similarity=0.054 Sum_probs=169.1
Q ss_pred cCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccc-ccc---ceEEEEEeCCccCHHHH
Q 048507 187 EAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQ-DHF---DLKAWTCVSDDFDVKGL 262 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f---~~~~wv~~~~~~~~~~~ 262 (1448)
++.++||++|+++|..++.... .+.....+.|+|++|+|||++++.++++.... ... -..+|+++....+...+
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~--~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPIL--RGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 4578999999999999986521 12234578999999999999999999743111 111 24678888887788889
Q ss_pred HHHHHHhcc---CCCC-CCCCHHHHHHHHHHHhC--CccEEEEEecCCCCC---hhhHhhhcccc--cC-CCCCcEEEEE
Q 048507 263 TKTILRSVT---KQTI-DDSDLNLLQEELKKKLS--QKKFLLVLDDVWNEN---YNDWVRLSRPF--EA-GAPGSKIIVT 330 (1448)
Q Consensus 263 ~~~i~~~l~---~~~~-~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~---~~~~~~l~~~l--~~-~~~gs~ilvT 330 (1448)
+..+++++. .... ...+..+..+.+.+.+. +++++||||+++... ......+.... .. ......+|.+
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 999999884 2211 12234455555555553 567899999996541 11122333221 11 1123344555
Q ss_pred cCchhhhhccC-------CcceEeCCCCCHHHHHHHHhhccc---CCc---hhhHHHHHHHHHhcCCchH-HHHHHHhhh
Q 048507 331 TRNQEVADIMG-------TASAYQLKKLSIDDCLAVVAQHSL---GSD---KLLEEIGKKIVAKCDGLPL-AAQTLGGLL 396 (1448)
Q Consensus 331 tR~~~v~~~~~-------~~~~~~l~~l~~~~a~~l~~~~~~---~~~---~~~~~~~~~i~~~~~g~PL-al~~~~~~l 396 (1448)
+........+. ....+.+++.+.++..+++..++. ... +...+.+.+++....|.|- |+.++-.+.
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~ 251 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAG 251 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 54433221111 124688999999999999987753 111 1222344456666678874 433332211
Q ss_pred ----cc-C--CChhHHHHHHhccccCCCCcccchhhHHHHhhhcCChhhHHHHhhhcccC--CCceeCHHHHHHHHH-Hc
Q 048507 397 ----RG-K--CDRSDWEDLLSCKIWNLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFP--KDYEFEEEEIILLWC-AS 466 (1448)
Q Consensus 397 ----~~-~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp--~~~~i~~~~li~~w~-~~ 466 (1448)
.. . -+.+..+.+.... -.....-++..||.+.|..+..++..- ++..+...++...+. ..
T Consensus 252 ~~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~ 321 (365)
T TIGR02928 252 EIAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVC 321 (365)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 11 1 1122333222211 112334566788988887776655321 333455555555221 11
Q ss_pred CCCcCCCCCCChHHHHHHHHHHHHhCCccccc
Q 048507 467 GFLDHKESGNPNEDLGRKFFQELRGRSFFQQS 498 (1448)
Q Consensus 467 g~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~ 498 (1448)
..+. ...........++..|...|++...
T Consensus 322 ~~~~---~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 322 EDIG---VDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HhcC---CCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 1111 1122346678889999999999863
No 28
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.01 E-value=1.3e-09 Score=120.31 Aligned_cols=193 Identities=21% Similarity=0.199 Sum_probs=98.8
Q ss_pred EeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHH---
Q 048507 190 VYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTI--- 266 (1448)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i--- 266 (1448)
|+||++|+++|.+++..+ ..+.+.|+|+.|+|||+|++++.+.. +..-..++|+........ .....+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~--~~~~~~~~y~~~~~~~~~-~~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINEL--KEKGYKVVYIDFLEESNE-SSLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHC--T--EECCCHHCCTTBSHH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHh--hhcCCcEEEEecccchhh-hHHHHHHHH
Confidence 789999999999999654 34788999999999999999998733 222123445544443322 112221
Q ss_pred -----------HHhccCCCC------CCCCHHHHHHHHHHHhC--CccEEEEEecCCCCC------hhhHhhhcccccC-
Q 048507 267 -----------LRSVTKQTI------DDSDLNLLQEELKKKLS--QKKFLLVLDDVWNEN------YNDWVRLSRPFEA- 320 (1448)
Q Consensus 267 -----------~~~l~~~~~------~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~------~~~~~~l~~~l~~- 320 (1448)
...+..... ...........+.+.+. +++++||+||+.... ..-...+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 111111110 01111222222223332 345999999995443 0111122222222
Q ss_pred -CCCCcEEEEEcCchhhhhc--------cCCcceEeCCCCCHHHHHHHHhhcccCCc--hhhHHHHHHHHHhcCCchHHH
Q 048507 321 -GAPGSKIIVTTRNQEVADI--------MGTASAYQLKKLSIDDCLAVVAQHSLGSD--KLLEEIGKKIVAKCDGLPLAA 389 (1448)
Q Consensus 321 -~~~gs~ilvTtR~~~v~~~--------~~~~~~~~l~~l~~~~a~~l~~~~~~~~~--~~~~~~~~~i~~~~~g~PLal 389 (1448)
......++++.....+... .+....+.+++++.+++++++........ +..++..++|+..+||+|..|
T Consensus 152 ~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l 231 (234)
T PF01637_consen 152 LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYL 231 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHH
T ss_pred cccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHH
Confidence 1233334444443333322 12234599999999999999988533221 124667799999999999988
Q ss_pred HH
Q 048507 390 QT 391 (1448)
Q Consensus 390 ~~ 391 (1448)
..
T Consensus 232 ~~ 233 (234)
T PF01637_consen 232 QE 233 (234)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 29
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.99 E-value=2.1e-08 Score=112.84 Aligned_cols=177 Identities=20% Similarity=0.183 Sum_probs=113.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHH----HH
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELK----KK 290 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~----~~ 290 (1448)
..++.|+|++|+||||+++.+++.... ..+ .++|+ +....+..+++..++..++.... ..+.......+. ..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~-~~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE-GRDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHHHHH
Confidence 358899999999999999999975332 121 22333 33345777888899988876532 222222233333 22
Q ss_pred h-CCccEEEEEecCCCCChhhHhhhccccc---CCCCCcEEEEEcCchhhhhcc----------CCcceEeCCCCCHHHH
Q 048507 291 L-SQKKFLLVLDDVWNENYNDWVRLSRPFE---AGAPGSKIIVTTRNQEVADIM----------GTASAYQLKKLSIDDC 356 (1448)
Q Consensus 291 l-~~~~~LlVlDdv~~~~~~~~~~l~~~l~---~~~~gs~ilvTtR~~~v~~~~----------~~~~~~~l~~l~~~~a 356 (1448)
. .+++.++|+||++......++.+..... .......|++|.... ....+ .....+++++++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 2 5778999999998876555655432211 112233455555432 21111 1124578999999999
Q ss_pred HHHHhhcccC-----CchhhHHHHHHHHHhcCCchHHHHHHHhhh
Q 048507 357 LAVVAQHSLG-----SDKLLEEIGKKIVAKCDGLPLAAQTLGGLL 396 (1448)
Q Consensus 357 ~~l~~~~~~~-----~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 396 (1448)
.+++...... ...-.++..+.|++.++|.|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9988765421 113446789999999999999999988765
No 30
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.95 E-value=2.1e-08 Score=114.82 Aligned_cols=275 Identities=15% Similarity=0.137 Sum_probs=150.1
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.+|||++..++++..++..... .......+.++|++|+|||+||+.+++... ..+ ..+.......... +...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~--~~~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEMG--VNL---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CCE---EEeccchhcCchh-HHHHH
Confidence 3689999999999998864321 123345678999999999999999987432 222 1122111111111 22222
Q ss_pred HhccCCCC------CCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchhhhhcc-
Q 048507 268 RSVTKQTI------DDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQEVADIM- 340 (1448)
Q Consensus 268 ~~l~~~~~------~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~- 340 (1448)
..+..... +... ....+.+...+.+.+..+|+|+..... .+ ...++ +.+-|..||+...+...+
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~---~~~~~---~~~li~~t~~~~~l~~~l~ 147 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSAR--SV---RLDLP---PFTLVGATTRAGMLTSPLR 147 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCcccc--ce---eecCC---CeEEEEecCCccccCHHHH
Confidence 33322110 0001 122334455555556666666654331 11 11111 245566677765443322
Q ss_pred -CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchHHHHHHHhhhccCCChhHHHHHHhccccCCCC
Q 048507 341 -GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPLAAQTLGGLLRGKCDRSDWEDLLSCKIWNLPE 418 (1448)
Q Consensus 341 -~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w~~~~~~~~~~~~~ 418 (1448)
.....+++++++.++..+++.+.+.... ...++.+..|++.|+|.|-.+..++..+ |..........+..
T Consensus 148 sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~it~ 219 (305)
T TIGR00635 148 DRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKIINR 219 (305)
T ss_pred hhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCCcCH
Confidence 1134678999999999999987764322 3446778899999999997665444332 11110000000000
Q ss_pred -cccchhhHHHHhhhcCChhhHHHHh-hhcccCCCceeCHHHHHHHHHHcCCCcCCCCCCChHHHHHHHHH-HHHhCCcc
Q 048507 419 -ERCDIIPALRVSYYYLSAPLKQCFA-YCSLFPKDYEFEEEEIILLWCASGFLDHKESGNPNEDLGRKFFQ-ELRGRSFF 495 (1448)
Q Consensus 419 -~~~~i~~~l~~sy~~L~~~~k~~f~-~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~-~L~~~sll 495 (1448)
.-......+...|..++++.+..+. .++.+..+ .+..+.+.... |. ....++..++ .|++++|+
T Consensus 220 ~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~---------~~~~~~~~~e~~Li~~~li 286 (305)
T TIGR00635 220 DIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE---------DADTIEDVYEPYLLQIGFL 286 (305)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC---------CcchHHHhhhHHHHHcCCc
Confidence 0011222245567888888877776 55666543 45554443321 11 1234666678 69999999
Q ss_pred cccC
Q 048507 496 QQSS 499 (1448)
Q Consensus 496 ~~~~ 499 (1448)
+...
T Consensus 287 ~~~~ 290 (305)
T TIGR00635 287 QRTP 290 (305)
T ss_pred ccCC
Confidence 7543
No 31
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.94 E-value=6.3e-09 Score=119.53 Aligned_cols=276 Identities=16% Similarity=0.174 Sum_probs=150.7
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.+|+||+..++.+..++..... .....+.+.|+|++|+|||++|+.+++... ..+ .++.... ......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l~--~~~---~~~~~~~-~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEMG--VNI---RITSGPA-LEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHhC--CCe---EEEeccc-ccChHHHHHHH
Confidence 5699999999999888854211 123456788999999999999999998432 221 1122111 11112223333
Q ss_pred HhccCCCC-CCCCH----HHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchhhhhccC-
Q 048507 268 RSVTKQTI-DDSDL----NLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQEVADIMG- 341 (1448)
Q Consensus 268 ~~l~~~~~-~~~~~----~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~- 341 (1448)
..+..... --++. ....+.+...+.+.+..+|+|+...... +...++ +.+-|..|+|...+...+.
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~-----~~~~l~---~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARS-----IRLDLP---PFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccc-----eeecCC---CceEEeecCCcccCCHHHHH
Confidence 33321110 00011 1122233444445555556655433210 011111 2445666777554433221
Q ss_pred -CcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchHHHHHHHhhhccCCChhHHHHHHhccccCCCC-
Q 048507 342 -TASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPLAAQTLGGLLRGKCDRSDWEDLLSCKIWNLPE- 418 (1448)
Q Consensus 342 -~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w~~~~~~~~~~~~~- 418 (1448)
....+++++++.++..+++.+.+.... ...++.+..|++.|+|.|-.+..+...+. .|..... ...+..
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~--~~~I~~~ 241 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVR------DFAQVKG--DGVITKE 241 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcC--CCCCCHH
Confidence 124689999999999999987764333 44567889999999999965544443321 1211110 001110
Q ss_pred cccchhhHHHHhhhcCChhhHHHHh-hhcccCCCceeCHHHHHHHHHHcCCCcCCCCCCChHHHHHHHHH-HHHhCCccc
Q 048507 419 ERCDIIPALRVSYYYLSAPLKQCFA-YCSLFPKDYEFEEEEIILLWCASGFLDHKESGNPNEDLGRKFFQ-ELRGRSFFQ 496 (1448)
Q Consensus 419 ~~~~i~~~l~~sy~~L~~~~k~~f~-~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~-~L~~~sll~ 496 (1448)
.-......+...+..|++..+..+. ....|+.+ .+..+.+.... | ...+.+++.++ .|++.+|++
T Consensus 242 ~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g---------~~~~~~~~~~e~~Li~~~li~ 308 (328)
T PRK00080 242 IADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G---------EERDTIEDVYEPYLIQQGFIQ 308 (328)
T ss_pred HHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C---------CCcchHHHHhhHHHHHcCCcc
Confidence 0012233445667788888888776 66677665 46666554322 1 11234555566 899999998
Q ss_pred ccC
Q 048507 497 QSS 499 (1448)
Q Consensus 497 ~~~ 499 (1448)
...
T Consensus 309 ~~~ 311 (328)
T PRK00080 309 RTP 311 (328)
T ss_pred cCC
Confidence 544
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.92 E-value=1e-10 Score=136.10 Aligned_cols=103 Identities=23% Similarity=0.156 Sum_probs=52.2
Q ss_pred cccEEEEecCCCc------hhhhhhcccCCccceeeecccccccccCcccCCCCC---ccEEEcccCCCcc----ccCCC
Q 048507 1160 SLKSLRVWDCPKL------ESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQ---LQEIEIRRCGNLV----SFPKG 1226 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~------~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~---L~~L~L~~~~~l~----~lp~~ 1226 (1448)
++++|+++++... ..++..+..+++|+.|++++|.+.+..+..+..+.+ |++|++++|.... .+...
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~ 131 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG 131 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence 4555555554433 233445555666666666666665444333333333 6666666654331 11112
Q ss_pred CCCC-CCccEEEecCccCcc----ccccccCCCCcccceec
Q 048507 1227 GLPG-AKLTRLEISDCNRLE----ALPKGLHNLKSLQELRI 1262 (1448)
Q Consensus 1227 ~~~~-~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~l 1262 (1448)
+..+ ++|+.|++++|...+ .++..+..++.|++|++
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l 172 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNL 172 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEEC
Confidence 2233 566667776666542 22333445555555555
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.89 E-value=1.4e-10 Score=134.87 Aligned_cols=234 Identities=20% Similarity=0.135 Sum_probs=144.8
Q ss_pred cccEEEEecCCCch----hhhhhcccCCccceeeecccccc------cccCcccCCCCCccEEEcccCCCccccCCCCCC
Q 048507 1160 SLKSLRVWDCPKLE----SIAERLDNNTSLEIIRIAYCENL------KILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLP 1229 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~Ls~n~~~------~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~ 1229 (1448)
.|+.|++++|.... .++..+...++|+.|+++++... ..++..+..+++|+.|++++|+.....+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 68899999887643 45667888899999999998765 223456677889999999998775444333323
Q ss_pred C---CCccEEEecCccCcc----ccccccCCC-Ccccceec-ccCCCcccc------CCCCCccceeeeccccccccccc
Q 048507 1230 G---AKLTRLEISDCNRLE----ALPKGLHNL-KSLQELRI-GVELPSLEE------DGLPTNLHSLGIRGNMEIWKSTI 1294 (1448)
Q Consensus 1230 ~---~~L~~L~l~~~~~~~----~~p~~l~~l-~~L~~L~l-~~~l~~~~~------~~~~~~L~~L~l~~n~~~~~~~~ 1294 (1448)
+ ++|++|++++|...+ .+...+..+ ++|+.|++ ++.+..... .....+|+.|++++|........
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 3 459999999988652 333455666 88999999 555552111 11225788899888853311111
Q ss_pred ccCCccccCCCccEEEEecCCCcCccccccccccCCCCCCCCCcCeEEEccCCCCc----cccccc-cCCCCCCeEeecC
Q 048507 1295 ERGRGFHRFSSLQHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLE----RLSSSI-VDLQNLTELRLLN 1369 (1448)
Q Consensus 1295 ~~~~~~~~l~~L~~L~l~~c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~----~lp~~~-~~l~~L~~L~l~~ 1369 (1448)
.....+..+++|++|++++|. +... ....+...+..+++|+.|++++|+... .+...+ ...+.|++|++++
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~--i~~~--~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~ 259 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNG--LTDE--GASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC 259 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCc--cChH--HHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccC
Confidence 122234556788999998863 1111 111223345567888899998865332 111111 1247888898888
Q ss_pred CCCCC-----cCCCC-CCcccccceeccCCchHHH
Q 048507 1370 CPKLK-----YFPEK-GLPSSLLQLSIYRCPLIAE 1398 (1448)
Q Consensus 1370 c~~l~-----~lp~~-~~~~~L~~L~i~~c~~l~~ 1398 (1448)
|. ++ .+... ...++|+.+++++|..-.+
T Consensus 260 n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 260 ND-ITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred CC-CCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 75 32 11110 1236788888888865433
No 34
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.88 E-value=2.4e-08 Score=127.01 Aligned_cols=309 Identities=15% Similarity=0.164 Sum_probs=181.1
Q ss_pred eEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEE---EeCCcc---CHHHH
Q 048507 189 QVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWT---CVSDDF---DVKGL 262 (1448)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv---~~~~~~---~~~~~ 262 (1448)
.++||+.|++.+...+..- ..+...++.+.|..|||||+++++|... +.+.+...+-. ...... ...+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v---~~g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRV---SKGRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHH---hCCCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHHH
Confidence 3689999999999999764 3455679999999999999999999873 32222111111 111111 12233
Q ss_pred HHHHHHhccCC-------------------CC-------------C---------CCCHH-----HHHHHHHHHh-CCcc
Q 048507 263 TKTILRSVTKQ-------------------TI-------------D---------DSDLN-----LLQEELKKKL-SQKK 295 (1448)
Q Consensus 263 ~~~i~~~l~~~-------------------~~-------------~---------~~~~~-----~~~~~l~~~l-~~~~ 295 (1448)
+++++.++... .. . +.... .....+.... +.++
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 34444333111 00 0 00000 1122223333 3569
Q ss_pred EEEEEecCCCCChhhHhhh---ccccc--C-CCCCcEEEEEcCch--hhhhccCCcceEeCCCCCHHHHHHHHhhcccCC
Q 048507 296 FLLVLDDVWNENYNDWVRL---SRPFE--A-GAPGSKIIVTTRNQ--EVADIMGTASAYQLKKLSIDDCLAVVAQHSLGS 367 (1448)
Q Consensus 296 ~LlVlDdv~~~~~~~~~~l---~~~l~--~-~~~gs~ilvTtR~~--~v~~~~~~~~~~~l~~l~~~~a~~l~~~~~~~~ 367 (1448)
..+|+||+...+....+-+ ..... . .....-.+.|.+.. .+.........+.|.||+..+...+........
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~ 235 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT 235 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc
Confidence 9999999955443332221 11111 0 00111223333332 122222334689999999999999998776554
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHhhhccC------CChhHHHHHHhccccCCCCcccchhhHHHHhhhcCChhhHHH
Q 048507 368 DKLLEEIGKKIVAKCDGLPLAAQTLGGLLRGK------CDRSDWEDLLSCKIWNLPEERCDIIPALRVSYYYLSAPLKQC 441 (1448)
Q Consensus 368 ~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~------~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~ 441 (1448)
.....+....|+++..|+|+.+..+-..+... .+...|..=.. .... +.....+.+.+..-.+.||...|+.
T Consensus 236 ~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~-~i~~-~~~~~~vv~~l~~rl~kL~~~t~~V 313 (849)
T COG3899 236 KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIA-SLGI-LATTDAVVEFLAARLQKLPGTTREV 313 (849)
T ss_pred ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHH-hcCC-chhhHHHHHHHHHHHhcCCHHHHHH
Confidence 56667888999999999999999998888764 22334432111 1111 1111235667888999999999999
Q ss_pred HhhhcccCCCceeCHHHHHHHHHHcCCCcCCCCCCChHHHHHHHHHHHHhCCcccccC-----CCcc---eEEEeHHHHH
Q 048507 442 FAYCSLFPKDYEFEEEEIILLWCASGFLDHKESGNPNEDLGRKFFQELRGRSFFQQSS-----NNIS---RFVMHDLIND 513 (1448)
Q Consensus 442 f~~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~-----~~~~---~~~mH~lv~~ 513 (1448)
+...||+- -.|+.+.+...+- ....+.+....+.|....++..++ .... +-..|+.|++
T Consensus 314 l~~AA~iG--~~F~l~~La~l~~-----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqq 380 (849)
T COG3899 314 LKAAACIG--NRFDLDTLAALAE-----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQ 380 (849)
T ss_pred HHHHHHhC--ccCCHHHHHHHHh-----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHH
Confidence 99999995 4556666665542 133566666666666665554221 1111 1257999998
Q ss_pred HHHH
Q 048507 514 LARW 517 (1448)
Q Consensus 514 ~a~~ 517 (1448)
.|-.
T Consensus 381 aaY~ 384 (849)
T COG3899 381 AAYN 384 (849)
T ss_pred HHhc
Confidence 8753
No 35
>PF05729 NACHT: NACHT domain
Probab=98.82 E-value=1.5e-08 Score=104.74 Aligned_cols=143 Identities=22% Similarity=0.274 Sum_probs=87.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccc----cceEEEEEeCCccCHH---HHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQDH----FDLKAWTCVSDDFDVK---GLTKTILRSVTKQTIDDSDLNLLQEELK 288 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 288 (1448)
|++.|+|.+|+||||+++.++.+...... +..++|+......... .+...+....... ..........+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~- 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES---IAPIEELLQEL- 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc---hhhhHHHHHHH-
Confidence 57899999999999999999875432222 4567777766544332 3333333333211 11111111111
Q ss_pred HHhCCccEEEEEecCCCCChh-------hHhhhcccccC--CCCCcEEEEEcCchhh---hhccCCcceEeCCCCCHHHH
Q 048507 289 KKLSQKKFLLVLDDVWNENYN-------DWVRLSRPFEA--GAPGSKIIVTTRNQEV---ADIMGTASAYQLKKLSIDDC 356 (1448)
Q Consensus 289 ~~l~~~~~LlVlDdv~~~~~~-------~~~~l~~~l~~--~~~gs~ilvTtR~~~v---~~~~~~~~~~~l~~l~~~~a 356 (1448)
..+.++++||+|++++.... .+..+...+.. ..++++++||+|.... .........+++.+|++++.
T Consensus 77 -~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 77 -LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred -HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 12578999999999654321 12222222222 2468999999998765 33334446799999999999
Q ss_pred HHHHhhc
Q 048507 357 LAVVAQH 363 (1448)
Q Consensus 357 ~~l~~~~ 363 (1448)
.+++.++
T Consensus 156 ~~~~~~~ 162 (166)
T PF05729_consen 156 KQYLRKY 162 (166)
T ss_pred HHHHHHH
Confidence 9998765
No 36
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.80 E-value=2.8e-07 Score=110.32 Aligned_cols=293 Identities=13% Similarity=0.103 Sum_probs=158.5
Q ss_pred cCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccc---cccc--ceEEEEEeCCccCHHH
Q 048507 187 EAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRV---QDHF--DLKAWTCVSDDFDVKG 261 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~f--~~~~wv~~~~~~~~~~ 261 (1448)
++.+.|||+|+++|...|...-. +.+...++.|+|++|.|||++++.|.+..+. +... -.+++|++....+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 46899999999999999976432 2233467889999999999999999864311 1111 2367888887778889
Q ss_pred HHHHHHHhccCCCC-CCCCHHHHHHHHHHHh-C--CccEEEEEecCCCCCh---hhHhhhcccccCCCCCcEEEE--EcC
Q 048507 262 LTKTILRSVTKQTI-DDSDLNLLQEELKKKL-S--QKKFLLVLDDVWNENY---NDWVRLSRPFEAGAPGSKIIV--TTR 332 (1448)
Q Consensus 262 ~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l-~--~~~~LlVlDdv~~~~~---~~~~~l~~~l~~~~~gs~ilv--TtR 332 (1448)
++..|++++..... ......+..+.+...+ . ....+||||+++.... +.+-.+... + ...+++|+| +|.
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~-~-~~s~SKLiLIGISN 910 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW-P-TKINSKLVLIAISN 910 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH-h-hccCCeEEEEEecC
Confidence 99999988854332 2223333444444443 2 2245999999964321 112222221 1 123555544 343
Q ss_pred chh--------hhhccCCcceEeCCCCCHHHHHHHHhhcccCCc-----hhhHHHHHHHHHhcCCchHHHHHHHhhhccC
Q 048507 333 NQE--------VADIMGTASAYQLKKLSIDDCLAVVAQHSLGSD-----KLLEEIGKKIVAKCDGLPLAAQTLGGLLRGK 399 (1448)
Q Consensus 333 ~~~--------v~~~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~ 399 (1448)
+.+ +...++ ...+...|.+.++-.+++..++.... ...+-+|+.++...|-.-.||.++-.+...+
T Consensus 911 dlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEik 989 (1164)
T PTZ00112 911 TMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENK 989 (1164)
T ss_pred chhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhc
Confidence 222 122222 13467799999999999988765321 2223334444444455566666665444322
Q ss_pred CC----hhHHHHHHhccccCCCCcccchhhHHHHhhhcCChhhHHHHhhhcccCC---CceeCHHHHHHHH--HHc--C-
Q 048507 400 CD----RSDWEDLLSCKIWNLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPK---DYEFEEEEIILLW--CAS--G- 467 (1448)
Q Consensus 400 ~~----~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp~---~~~i~~~~li~~w--~~~--g- 467 (1448)
.. .+.-..+.... -...+.-....||.+.|-.+..+...-+ ...++..++.... +++ |
T Consensus 990 egskVT~eHVrkAleei----------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk 1059 (1164)
T PTZ00112 990 RGQKIVPRDITEATNQL----------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGK 1059 (1164)
T ss_pred CCCccCHHHHHHHHHHH----------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhh
Confidence 11 11111111100 0112233446788887766554432211 1135544444322 222 1
Q ss_pred CCcCCCCCCChHHHHHHHHHHHHhCCcccc
Q 048507 468 FLDHKESGNPNEDLGRKFFQELRGRSFFQQ 497 (1448)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~L~~~sll~~ 497 (1448)
.+ +..........++.+|...|+|..
T Consensus 1060 ~i----Gv~plTqRV~d~L~eL~~LGIIl~ 1085 (1164)
T PTZ00112 1060 YI----GMCSNNELFKIMLDKLVKMGILLI 1085 (1164)
T ss_pred hc----CCCCcHHHHHHHHHHHHhcCeEEe
Confidence 11 111111256777788888887764
No 37
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.60 E-value=3.9e-07 Score=99.37 Aligned_cols=169 Identities=24% Similarity=0.315 Sum_probs=103.5
Q ss_pred ccccCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHH
Q 048507 184 LVTEAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLT 263 (1448)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 263 (1448)
++...+++|.+..+.++++ .+.+.-+.+||++|+||||||+.++. .....|. .++...+-.+-+
T Consensus 26 ~vGQ~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~-----~~sAv~~gvkdl 89 (436)
T COG2256 26 VVGQEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAFE-----ALSAVTSGVKDL 89 (436)
T ss_pred hcChHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHH--hhCCceE-----EeccccccHHHH
Confidence 3445566676666665544 23566778999999999999999987 3444442 222222222222
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEE--EcCchhhhh---
Q 048507 264 KTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIV--TTRNQEVAD--- 338 (1448)
Q Consensus 264 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v~~--- 338 (1448)
+++++. .-+....+++.+|++|.|..-+..+-+.+ +|.-..|.-|+| ||.++...-
T Consensus 90 r~i~e~----------------a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~A 150 (436)
T COG2256 90 REIIEE----------------ARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPA 150 (436)
T ss_pred HHHHHH----------------HHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHH
Confidence 222221 11223348899999999976554443333 444456877777 777764321
Q ss_pred ccCCcceEeCCCCCHHHHHHHHhhcccCCc--------hhhHHHHHHHHHhcCCchH
Q 048507 339 IMGTASAYQLKKLSIDDCLAVVAQHSLGSD--------KLLEEIGKKIVAKCDGLPL 387 (1448)
Q Consensus 339 ~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~--------~~~~~~~~~i~~~~~g~PL 387 (1448)
-..-..++++++|+.+|-.+++.+.+.... ...++..+-|++.++|---
T Consensus 151 LlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 151 LLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred HhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 113346899999999999999887322111 1235567778888888654
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.55 E-value=7.7e-08 Score=96.65 Aligned_cols=111 Identities=27% Similarity=0.344 Sum_probs=55.2
Q ss_pred hhhc-ccCceeEEEeCCCCccccCccccCCccceEEeccCccccccChhh-hccccccEEeccCCchhhccc--cccccc
Q 048507 589 TELF-KLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPESV-NKLYNLHSLLLEDCDRLKKLC--ADMGNL 664 (1448)
Q Consensus 589 ~~~~-~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp~~i-~~L~~L~~L~L~~n~~~~~lp--~~i~~L 664 (1448)
..+. .+.+|++|+|++|.|+.++ .+..+++|++|++++|.|+.+++.+ ..+++|+.|+|++|. +..+- ..+..+
T Consensus 35 e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l 112 (175)
T PF14580_consen 35 ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSL 112 (175)
T ss_dssp -S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-
T ss_pred cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCc-CCChHHhHHHHcC
Confidence 3444 5788999999999999885 5788999999999999999997666 468999999999874 44332 346788
Q ss_pred CCCCeeeecCCCCcccccc----ccCcccccccccceecccC
Q 048507 665 AKLHHLKNSNTKSLEEMPV----GIGRLTSLQTLCNFVVGQG 702 (1448)
Q Consensus 665 ~~L~~L~l~~~~~l~~~p~----~i~~L~~L~~L~~~~~~~~ 702 (1448)
++|++|++.+|. +...+. -+..+++|+.|+...+...
T Consensus 113 ~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~~~ 153 (175)
T PF14580_consen 113 PKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVTEE 153 (175)
T ss_dssp TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETTS-
T ss_pred CCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEccHH
Confidence 999999999998 555542 2678889999977666543
No 39
>PRK06893 DNA replication initiation factor; Validated
Probab=98.52 E-value=7e-07 Score=96.39 Aligned_cols=153 Identities=16% Similarity=0.205 Sum_probs=94.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQK 294 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1448)
.+.+.|+|++|+|||+||+++++.. ......+.|+++... ..... .+.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~y~~~~~~---~~~~~---------------------~~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHY--LLNQRTAIYIPLSKS---QYFSP---------------------AVLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEeeHHHh---hhhhH---------------------HHHhhcc-c
Confidence 3578999999999999999999842 222334567765321 00000 1111122 2
Q ss_pred cEEEEEecCCCCC-hhhHhh-hcccccC-CCCCcEEEE-EcCc---------hhhhhccCCcceEeCCCCCHHHHHHHHh
Q 048507 295 KFLLVLDDVWNEN-YNDWVR-LSRPFEA-GAPGSKIIV-TTRN---------QEVADIMGTASAYQLKKLSIDDCLAVVA 361 (1448)
Q Consensus 295 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~ilv-TtR~---------~~v~~~~~~~~~~~l~~l~~~~a~~l~~ 361 (1448)
.-+||+||+|... ...|+. +...+.. ...|..+|| |++. +++...+.....+++++++.++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3489999998642 234542 2222221 123555554 4443 3445555556789999999999999999
Q ss_pred hcccCCc-hhhHHHHHHHHHhcCCchHHHHHHHh
Q 048507 362 QHSLGSD-KLLEEIGKKIVAKCDGLPLAAQTLGG 394 (1448)
Q Consensus 362 ~~~~~~~-~~~~~~~~~i~~~~~g~PLal~~~~~ 394 (1448)
+.+.... ...+++.+-|++.+.|..-++..+-.
T Consensus 172 ~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 172 RNAYQRGIELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 8775433 45567888899999887766554443
No 40
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.51 E-value=4.7e-09 Score=113.63 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=26.5
Q ss_pred cccEEEEecCCCchh-hhhhcccCCccceeeeccccccccc--CcccCCCCCccEEEc
Q 048507 1160 SLKSLRVWDCPKLES-IAERLDNNTSLEIIRIAYCENLKIL--PSGLHNLRQLQEIEI 1214 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~Ls~n~~~~~~--p~~l~~l~~L~~L~L 1214 (1448)
.|..+.|++|+.+.. ..+.+..+++|+.+++-+|.....- ...-.++|++++..+
T Consensus 402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred ccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 455555555554432 2334555566666666665544321 122234555554443
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.50 E-value=4.6e-07 Score=101.96 Aligned_cols=93 Identities=29% Similarity=0.558 Sum_probs=58.2
Q ss_pred cccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEecCccCccccccccCCCCccc
Q 048507 1179 LDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEISDCNRLEALPKGLHNLKSLQ 1258 (1448)
Q Consensus 1179 ~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 1258 (1448)
+..+.+++.|++++| .+..+|. -..+|++|.+++|+.++.+|..+. ++|+.|++++|..+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccc
Confidence 555677888888877 4555552 133688888888888888876442 5788888888876666664 355
Q ss_pred ceec-ccCCCccccCCCCCccceeeecc
Q 048507 1259 ELRI-GVELPSLEEDGLPTNLHSLGIRG 1285 (1448)
Q Consensus 1259 ~L~l-~~~l~~~~~~~~~~~L~~L~l~~ 1285 (1448)
.|++ ++....+ ..+|++|+.|.+.+
T Consensus 116 ~L~L~~n~~~~L--~~LPssLk~L~I~~ 141 (426)
T PRK15386 116 SLEIKGSATDSI--KNVPNGLTSLSINS 141 (426)
T ss_pred eEEeCCCCCccc--ccCcchHhheeccc
Confidence 5555 3222222 23555666666543
No 42
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.48 E-value=8.1e-09 Score=111.82 Aligned_cols=140 Identities=15% Similarity=0.213 Sum_probs=72.5
Q ss_pred cccCCcceEeecCCCCccccchhhhhHHHhhhhhhccccceEEecccCCccccc--cccCccCCcceeeeccCCCCcccC
Q 048507 957 QDICSLKRLTIDSCPTLQSLVAEEEKDQQQQLCELSCRLEYLELNECKGLVKLP--QSSLSLSSLREIEICGCSSLVSFP 1034 (1448)
Q Consensus 957 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~lp--~~~~~l~~L~~L~L~~c~~l~~~~ 1034 (1448)
..+++++.|.+.+|.++++- .+..+...++.|++|++..|..++... .....+++|++|+++.|+.+..-.
T Consensus 161 ~~CpnIehL~l~gc~~iTd~-------s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~g 233 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDS-------SLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNG 233 (483)
T ss_pred hhCCchhhhhhhcceeccHH-------HHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCc
Confidence 45667777777777665542 223344556777777777776665322 233466777777777776655411
Q ss_pred ---CCCCccccceeEecccCCCCccchhhccCCCCCcceEEEecCCCcccccCC---cCCcCccEEEEecCCCCc
Q 048507 1035 ---EVALPAKLRIISINSCDALKWLPEAWMCDFNSSLEILSIECCRSLTYIAGV---QLPPSLKRLYIEFCDNIR 1103 (1448)
Q Consensus 1035 ---~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~~~~l~ 1103 (1448)
-...+..++.+.+.+|..++.-........+.-+.++++.+|..+++...+ ..+..|+.+..++|..+.
T Consensus 234 v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~ 308 (483)
T KOG4341|consen 234 VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDIT 308 (483)
T ss_pred chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCc
Confidence 011234455555555554433222222223344555555566555544322 123445555555555443
No 43
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.43 E-value=4e-07 Score=89.55 Aligned_cols=117 Identities=16% Similarity=0.181 Sum_probs=81.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccc---cccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQ---DHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKL 291 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 291 (1448)
.+++.|+|.+|+|||++++.++++.... ..-..++|+.+....+...+...++++++.......+.+.+.+.+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4789999999999999999998743110 0034567999988889999999999999887666567777778888888
Q ss_pred CCcc-EEEEEecCCCC-ChhhHhhhcccccCCCCCcEEEEEcCc
Q 048507 292 SQKK-FLLVLDDVWNE-NYNDWVRLSRPFEAGAPGSKIIVTTRN 333 (1448)
Q Consensus 292 ~~~~-~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~ 333 (1448)
...+ .+||+|+++.- ....++.+..... ..+.++|+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 6554 59999999654 4344444433222 567778777665
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=5.8e-08 Score=105.99 Aligned_cols=84 Identities=18% Similarity=0.097 Sum_probs=45.2
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeeccccccccc-CcccCCCCCccEEEcccCCCcc-ccCCC-----CCCCCC
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKIL-PSGLHNLRQLQEIEIRRCGNLV-SFPKG-----GLPGAK 1232 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~-p~~l~~l~~L~~L~L~~~~~l~-~lp~~-----~~~~~~ 1232 (1448)
+|+.|+|..|............+..|+.|||++|+++..- -.....|+.|+.|+++.|..-. .+|+. ...+++
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~k 302 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPK 302 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccccc
Confidence 6777777776544333334455566777777776655422 1234556666666666653221 22222 123456
Q ss_pred ccEEEecCccC
Q 048507 1233 LTRLEISDCNR 1243 (1448)
Q Consensus 1233 L~~L~l~~~~~ 1243 (1448)
|++|+++.|+.
T Consensus 303 L~~L~i~~N~I 313 (505)
T KOG3207|consen 303 LEYLNISENNI 313 (505)
T ss_pred ceeeecccCcc
Confidence 66666666553
No 45
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.42 E-value=3.8e-06 Score=99.65 Aligned_cols=173 Identities=21% Similarity=0.246 Sum_probs=102.7
Q ss_pred CeEeccchhHHH---HHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHH
Q 048507 188 AQVYGRETEKKD---VVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTK 264 (1448)
Q Consensus 188 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 264 (1448)
+++||++..+.. +..++... ....+.++|++|+||||+|+.+++. ....| +.++....-....+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHHHH
Confidence 357888777555 77766433 3457788999999999999999873 22222 22221111111111
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHH-hCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEE--EcCchh--hhhc
Q 048507 265 TILRSVTKQTIDDSDLNLLQEELKKK-LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIV--TTRNQE--VADI 339 (1448)
Q Consensus 265 ~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~--v~~~ 339 (1448)
.+++ ..... ..+++.+|++|+++.......+.+...+. .|..++| ||.+.. +...
T Consensus 79 ~ii~-----------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 79 EVIE-----------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHHH-----------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHH
Confidence 2211 11111 24578899999998765555555554443 2444554 344432 1111
Q ss_pred c-CCcceEeCCCCCHHHHHHHHhhcccC---Cc-hhhHHHHHHHHHhcCCchHHHHHHH
Q 048507 340 M-GTASAYQLKKLSIDDCLAVVAQHSLG---SD-KLLEEIGKKIVAKCDGLPLAAQTLG 393 (1448)
Q Consensus 340 ~-~~~~~~~l~~l~~~~a~~l~~~~~~~---~~-~~~~~~~~~i~~~~~g~PLal~~~~ 393 (1448)
+ .-...+++.+++.++..+++.+.... .. ...++....|++.++|.+..+..+.
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 1 22357899999999999998875321 11 3345677889999999987664443
No 46
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.40 E-value=3.9e-06 Score=85.79 Aligned_cols=181 Identities=22% Similarity=0.234 Sum_probs=95.0
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
++|||.+.-++.+.-++..... ......-+.+||++|+||||||..+++ +....|. +++...-....+ +..++
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~~i~k~~d-l~~il 96 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGPAIEKAGD-LAAIL 96 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECCC--SCHH-HHHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccchhhhhHHH-HHHHH
Confidence 5799999888876655542211 233567788999999999999999998 3444442 233211111111 11122
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhccccc--------CCCC-----------CcEEE
Q 048507 268 RSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFE--------AGAP-----------GSKII 328 (1448)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~--------~~~~-----------gs~il 328 (1448)
.. + +++-+|.+|.++.-....-+.+...+. ..++ =+-|=
T Consensus 97 ~~---------------------l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTlig 154 (233)
T PF05496_consen 97 TN---------------------L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIG 154 (233)
T ss_dssp HT------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEE
T ss_pred Hh---------------------c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEee
Confidence 22 1 234466667776543322222221111 1111 22344
Q ss_pred EEcCchhhhhccCCc--ceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchHHHHHHHhhhc
Q 048507 329 VTTRNQEVADIMGTA--SAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPLAAQTLGGLLR 397 (1448)
Q Consensus 329 vTtR~~~v~~~~~~~--~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal~~~~~~l~ 397 (1448)
.|||...+...+... -..+++..+.+|-.++..+.+..-. +..++.+.+|++++.|-|--..-+-..++
T Consensus 155 ATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 155 ATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 588876555444332 2457999999999999987764433 55678899999999999975554444443
No 47
>PTZ00202 tuzin; Provisional
Probab=98.39 E-value=3.4e-05 Score=86.10 Aligned_cols=169 Identities=14% Similarity=0.178 Sum_probs=101.9
Q ss_pred cccccCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHH
Q 048507 183 RLVTEAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGL 262 (1448)
Q Consensus 183 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 262 (1448)
.+...+.|+||++|++++...|...+ ....+++.|+|++|+|||||++.+..... + ...+++.. +..++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d---~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eEl 325 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLD---TAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDT 325 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccC---CCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHH
Confidence 34456789999999999999996542 22456999999999999999999986332 1 13333333 67999
Q ss_pred HHHHHHhccCCCCCCC--CHHHHHHHHHHHh-C-CccEEEEEecCCCCC-hhhHhhhcccccCCCCCcEEEEEcCchhhh
Q 048507 263 TKTILRSVTKQTIDDS--DLNLLQEELKKKL-S-QKKFLLVLDDVWNEN-YNDWVRLSRPFEAGAPGSKIIVTTRNQEVA 337 (1448)
Q Consensus 263 ~~~i~~~l~~~~~~~~--~~~~~~~~l~~~l-~-~~~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 337 (1448)
++.++.+++.+..... -.+.+.+.+.+.- . +++.+||+-==...+ ...+.+.. .+.....-|+|++---.+...
T Consensus 326 Lr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt 404 (550)
T PTZ00202 326 LRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLT 404 (550)
T ss_pred HHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcc
Confidence 9999999997432221 1233444443332 2 566666654221111 11122221 223334567777754433321
Q ss_pred hcc---CCcceEeCCCCCHHHHHHHHhhc
Q 048507 338 DIM---GTASAYQLKKLSIDDCLAVVAQH 363 (1448)
Q Consensus 338 ~~~---~~~~~~~l~~l~~~~a~~l~~~~ 363 (1448)
... .--.-|-+++++.++|.++..+.
T Consensus 405 ~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 405 IANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 111 11245889999999999887654
No 48
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=8.7e-06 Score=97.91 Aligned_cols=195 Identities=13% Similarity=0.166 Sum_probs=115.7
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.++||.+..++.|..++..+. -.+.+.++|..|+||||+|+.+.+.......+.. ..+. .-...+.|.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~---~PCG----~C~sCr~I~ 83 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS---QPCG----VCRACREID 83 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC---CCCc----ccHHHHHHh
Confidence 358999999999999986432 2456779999999999999988764321111100 0000 001111111
Q ss_pred Hh-----ccCCCCCCCCHHHHHHHHHHH----hCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchh-hh
Q 048507 268 RS-----VTKQTIDDSDLNLLQEELKKK----LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQE-VA 337 (1448)
Q Consensus 268 ~~-----l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~ 337 (1448)
.. +..........+++.+.+... ..++.-++|||+++..+...+..+.+.+.......++|+||.+.. +.
T Consensus 84 ~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp 163 (830)
T PRK07003 84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIP 163 (830)
T ss_pred cCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhcc
Confidence 00 000000112233333322221 124556899999987776677777776666556778887777643 32
Q ss_pred hcc-CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCch-HHHHHHHh
Q 048507 338 DIM-GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLP-LAAQTLGG 394 (1448)
Q Consensus 338 ~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~P-Lal~~~~~ 394 (1448)
..+ .-...++++.++.++..+.+.+...... ...++..+.|++.++|.. -|+..+-.
T Consensus 164 ~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 164 VTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred chhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 221 2235799999999999988877543222 345677888999998855 45555433
No 49
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.39 E-value=1.9e-08 Score=113.06 Aligned_cols=160 Identities=23% Similarity=0.301 Sum_probs=106.7
Q ss_pred chhhhhhhcccCceeEEEeCCCCccccCccccCCccceEEeccCccccccChhhhccccccEEeccCCchhhcccccccc
Q 048507 584 APSILTELFKLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGN 663 (1448)
Q Consensus 584 ~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~i~~ 663 (1448)
...+|.+++.+..|..|.|..|.|..+|..+++|..|.+|||+.|+++.+|..++.|+ |+.|.+++| +++.+|..|+.
T Consensus 87 ~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~ 164 (722)
T KOG0532|consen 87 FSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGL 164 (722)
T ss_pred cccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCccccc
Confidence 3456777777777888888888888888888888888888888888888888777764 778877774 67788888887
Q ss_pred cCCCCeeeecCCCCccccccccCcccccccccceecccCCCCCccccccccccCceeEEeecCCccchhhhHHhhcCCCC
Q 048507 664 LAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGQGSGSGLRELKLLTHLHGTLKISKLENVKCVGDAMEAQMDGKK 743 (1448)
Q Consensus 664 L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~ 743 (1448)
+..|.+||.+.|. +..+|..++.|.+|+.|.+..+... .-..++..| .+..++...+....++..+..++
T Consensus 165 ~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~--~lp~El~~L-------pLi~lDfScNkis~iPv~fr~m~ 234 (722)
T KOG0532|consen 165 LPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLE--DLPEELCSL-------PLIRLDFSCNKISYLPVDFRKMR 234 (722)
T ss_pred chhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhh--hCCHHHhCC-------ceeeeecccCceeecchhhhhhh
Confidence 7788888888887 7778888888888877743221110 111222222 22222222223334556677777
Q ss_pred CCCeEEEEeecC
Q 048507 744 NLKELSLNWTCS 755 (1448)
Q Consensus 744 ~L~~L~L~~~~~ 755 (1448)
+|++|-|..|..
T Consensus 235 ~Lq~l~LenNPL 246 (722)
T KOG0532|consen 235 HLQVLQLENNPL 246 (722)
T ss_pred hheeeeeccCCC
Confidence 777777766543
No 50
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.38 E-value=1.8e-06 Score=94.20 Aligned_cols=170 Identities=16% Similarity=0.174 Sum_probs=100.1
Q ss_pred cchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccC
Q 048507 193 RETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTK 272 (1448)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 272 (1448)
.+..++++.+++.. ...+.+.|+|++|+|||++|+.+++.. .......+++++..-.+. ...
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~--~~~~~~~~~i~~~~~~~~---~~~------- 83 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAA--EERGKSAIYLPLAELAQA---DPE------- 83 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCcEEEEeHHHHHHh---HHH-------
Confidence 34466666666532 234688899999999999999998742 222334566665432110 001
Q ss_pred CCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChh-hH-hhhcccccC-CCCCcEEEEEcCchh---------hhhcc
Q 048507 273 QTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYN-DW-VRLSRPFEA-GAPGSKIIVTTRNQE---------VADIM 340 (1448)
Q Consensus 273 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~ 340 (1448)
+...+.. .-+||+||++..... .| ..+...+.. ...+.++|+||+... +...+
T Consensus 84 --------------~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 84 --------------VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred --------------HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 1111222 238999999654321 22 233332221 123457888887532 11122
Q ss_pred CCcceEeCCCCCHHHHHHHHhhcccCC-chhhHHHHHHHHHhcCCchHHHHHHHhh
Q 048507 341 GTASAYQLKKLSIDDCLAVVAQHSLGS-DKLLEEIGKKIVAKCDGLPLAAQTLGGL 395 (1448)
Q Consensus 341 ~~~~~~~l~~l~~~~a~~l~~~~~~~~-~~~~~~~~~~i~~~~~g~PLal~~~~~~ 395 (1448)
.....+++.+++.++...++...+... ....++..+.|++.+.|.|..+..+...
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 223578999999999888887654221 2344567788888999999877766433
No 51
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=6.8e-06 Score=95.53 Aligned_cols=190 Identities=16% Similarity=0.167 Sum_probs=109.7
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.+++|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++.......+.. .....-...+++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~-------~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS-------NPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCCCHHHHHHh
Confidence 467899999999999886532 3467789999999999999999874221111100 0000000111111
Q ss_pred HhccC-----CCCCCCCHHHHHHHHHHH----hCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCch-hhh
Q 048507 268 RSVTK-----QTIDDSDLNLLQEELKKK----LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQ-EVA 337 (1448)
Q Consensus 268 ~~l~~-----~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~ 337 (1448)
..... ........+++.+.+... ..+++-++|+|+++......+..+...+.......++|++|.+. .+.
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIP 163 (363)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhh
Confidence 10000 000011222222211111 12445699999997766556767766666555566777766543 333
Q ss_pred hcc-CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchHHH
Q 048507 338 DIM-GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPLAA 389 (1448)
Q Consensus 338 ~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal 389 (1448)
..+ +-...+++.+++.++..+.+...+.... ...++.+..|++.++|.|-.+
T Consensus 164 ~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 164 KTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 222 2235799999999999888876543222 344567788999999988543
No 52
>PRK04195 replication factor C large subunit; Provisional
Probab=98.37 E-value=1.8e-05 Score=96.01 Aligned_cols=246 Identities=15% Similarity=0.135 Sum_probs=135.7
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.+++|++..++++.+|+..... +...+.+.|+|++|+||||+|+.++++.. |+ ++-++++...+.. ....++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~-~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTAD-VIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHH-HHHHHH
Confidence 4589999999999999976431 12267899999999999999999998431 22 2334444332222 222222
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCCh----hhHhhhcccccCCCCCcEEEEEcCch-hhhh-cc-
Q 048507 268 RSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENY----NDWVRLSRPFEAGAPGSKIIVTTRNQ-EVAD-IM- 340 (1448)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~-~~- 340 (1448)
....... .....++-+||+|+++.... ..+..+...+.. .+..||+|+.+. .... .+
T Consensus 86 ~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 86 GEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHh
Confidence 2211100 00113678999999976432 224444443332 234466666432 1211 11
Q ss_pred CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchHHHHHHHhhhccC-C--ChhHHHHHHhccccCC
Q 048507 341 GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPLAAQTLGGLLRGK-C--DRSDWEDLLSCKIWNL 416 (1448)
Q Consensus 341 ~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~-~--~~~~w~~~~~~~~~~~ 416 (1448)
.....+++.+++.++....+...+.... ....++...|++.++|..-.+......+... . +.+....+..
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~------ 223 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR------ 223 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc------
Confidence 2235789999999998888776543222 3346778899999999765554333333222 1 1222222221
Q ss_pred CCcccchhhHHHHhhh-cCChhhHHHHhhhcccCCCceeCHHHHHHHHHHcCCCcC
Q 048507 417 PEERCDIIPALRVSYY-YLSAPLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDH 471 (1448)
Q Consensus 417 ~~~~~~i~~~l~~sy~-~L~~~~k~~f~~~a~fp~~~~i~~~~li~~w~~~g~~~~ 471 (1448)
.+....++.++..-+. .-.......+.. ..++.+ .+..|+.+.+...
T Consensus 224 ~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~~-~i~~~l~en~~~~ 271 (482)
T PRK04195 224 RDREESIFDALDAVFKARNADQALEASYD-------VDEDPD-DLIEWIDENIPKE 271 (482)
T ss_pred CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCHH-HHHHHHHhccccc
Confidence 1122456666665554 222333333222 223333 4678999998653
No 53
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.36 E-value=9.4e-06 Score=92.71 Aligned_cols=179 Identities=19% Similarity=0.271 Sum_probs=116.4
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCc----ccccccceEEEEEe-CCccCHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDK----RVQDHFDLKAWTCV-SDDFDVKGL 262 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----~~~~~f~~~~wv~~-~~~~~~~~~ 262 (1448)
.+++|.+..++.+..++..+. -.+...++|+.|+||||+|+.+++.. ....+.|...|... +......+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 357899888999999985432 34677899999999999999998632 12345555555432 22222222
Q ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchhhh-hcc-
Q 048507 263 TKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQEVA-DIM- 340 (1448)
Q Consensus 263 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~-~~~- 340 (1448)
.+++.+.+... -..+++-++|+|+++..+...+..+...+.....++.+|++|.+.+.. ...
T Consensus 78 ir~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 22222222111 112456688888887666677888888888777888888888655322 211
Q ss_pred CCcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCchHHHHH
Q 048507 341 GTASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGLPLAAQT 391 (1448)
Q Consensus 341 ~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 391 (1448)
.-...+++.+++.++....+.+...+. .++.++.++..++|.|.-+..
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYNDI---KEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 223689999999999988886643221 244577889999998875543
No 54
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.35 E-value=4.1e-07 Score=74.77 Aligned_cols=57 Identities=28% Similarity=0.511 Sum_probs=41.1
Q ss_pred CceeEEEeCCCCccccC-ccccCCccceEEeccCccccccC-hhhhccccccEEeccCC
Q 048507 595 QRLRVFSLRGYRIDELP-DSIGDLRYFRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDC 651 (1448)
Q Consensus 595 ~~L~~L~L~~n~i~~lp-~~i~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n 651 (1448)
++|++|++++|+|+.+| ..|.++++|++|++++|.|+.+| ..|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 35777777777777775 46677777777777777777665 46677777777777776
No 55
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.34 E-value=6.4e-07 Score=98.70 Aligned_cols=286 Identities=17% Similarity=0.176 Sum_probs=180.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccc-ceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHF-DLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLS 292 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 292 (1448)
..+.+.++|.|||||||++-.+.. ....| +.+.++.+..-.+...+.-.+...++-.... -+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 458899999999999999988775 45566 4555666666666666666666666544322 1223334556667
Q ss_pred CccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchhhhhccCCcceEeCCCCCHH-HHHHHHhhcccCC----
Q 048507 293 QKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQEVADIMGTASAYQLKKLSID-DCLAVVAQHSLGS---- 367 (1448)
Q Consensus 293 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~l~~~-~a~~l~~~~~~~~---- 367 (1448)
+++.++|+||.... .+.-..+...+....+.-+|+.|+|..... .....+.+.+|+.. ++.++|...+...
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 88999999998332 112222333444445566789999975332 23456788888765 6888886654322
Q ss_pred --chhhHHHHHHHHHhcCCchHHHHHHHhhhccCCC-------hhHHHHHHhccccCCCCcccchhhHHHHhhhcCChhh
Q 048507 368 --DKLLEEIGKKIVAKCDGLPLAAQTLGGLLRGKCD-------RSDWEDLLSCKIWNLPEERCDIIPALRVSYYYLSAPL 438 (1448)
Q Consensus 368 --~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~-------~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~ 438 (1448)
.........+|.+..+|.|++|..+++..+.-.. .+.|...... .....-........+.+||.-|....
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhHH
Confidence 1445667889999999999999999988876422 2223222211 11111112356778999999999999
Q ss_pred HHHHhhhcccCCCceeCHHHHHHHHHHcCCCcCCCCCCChHHHHHHHHHHHHhCCcccccC-CCcceEEEeHHHHHHHHH
Q 048507 439 KQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKESGNPNEDLGRKFFQELRGRSFFQQSS-NNISRFVMHDLINDLARW 517 (1448)
Q Consensus 439 k~~f~~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~-~~~~~~~mH~lv~~~a~~ 517 (1448)
+-.|..++.|...+... ...|.+.|-.. ..........+..+++++++...+ .+...|+.-+-++.|+..
T Consensus 242 ~~~~~rLa~~~g~f~~~----l~~~~a~g~~~-----~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yala 312 (414)
T COG3903 242 RALFGRLAVFVGGFDLG----LALAVAAGADV-----DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALA 312 (414)
T ss_pred HHHhcchhhhhhhhccc----HHHHHhcCCcc-----ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999998877654 23444444221 112234555677888988886532 222345555555665554
Q ss_pred Hh
Q 048507 518 AA 519 (1448)
Q Consensus 518 ~~ 519 (1448)
+.
T Consensus 313 eL 314 (414)
T COG3903 313 EL 314 (414)
T ss_pred HH
Confidence 33
No 56
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.34 E-value=5.5e-06 Score=96.81 Aligned_cols=194 Identities=15% Similarity=0.136 Sum_probs=108.3
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccc-eEEEEEeCCccCHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFD-LKAWTCVSDDFDVKGLTKTI 266 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 266 (1448)
+.++|++..++++..++... ..+.+.++|++|+||||+|+.+++... ...+. ..+.++++.-.+ .....+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~--~~~~~~ 85 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFD--QGKKYL 85 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhh--cchhhh
Confidence 45889999999999988543 334678999999999999999887422 11111 234444432110 000000
Q ss_pred H------HhccCC-CCCCCCHHHHHHHHHHHh-----CCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCch
Q 048507 267 L------RSVTKQ-TIDDSDLNLLQEELKKKL-----SQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQ 334 (1448)
Q Consensus 267 ~------~~l~~~-~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 334 (1448)
. ..++.. .......+...+.++... .+.+-+||+||+..........+...+......+++|+|+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 0 000000 000111222222222221 1344589999996654334444544444444557788777543
Q ss_pred -hhhhcc-CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchHHHH
Q 048507 335 -EVADIM-GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPLAAQ 390 (1448)
Q Consensus 335 -~v~~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal~ 390 (1448)
.+...+ .....+++.+++.++...++...+.... ....+.+..+++.++|.+-.+.
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 222222 2235688999999998888877543222 3456788889999988765543
No 57
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.34 E-value=2.7e-07 Score=92.75 Aligned_cols=98 Identities=29% Similarity=0.462 Sum_probs=35.0
Q ss_pred ccCceeEEEeCCCCccccCcccc-CCccceEEeccCccccccChhhhccccccEEeccCCchhhcccccc-cccCCCCee
Q 048507 593 KLQRLRVFSLRGYRIDELPDSIG-DLRYFRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADM-GNLAKLHHL 670 (1448)
Q Consensus 593 ~l~~L~~L~L~~n~i~~lp~~i~-~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~i-~~L~~L~~L 670 (1448)
+..+++.|+|++|.|+.+. .++ .+.+|+.|||++|.|+.++ .+..|++|++|++++| .+..++..+ ..+++|++|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCCEE
Confidence 5567899999999999884 465 6889999999999999985 6888999999999997 566676556 479999999
Q ss_pred eecCCCCcccccc--ccCcccccccc
Q 048507 671 KNSNTKSLEEMPV--GIGRLTSLQTL 694 (1448)
Q Consensus 671 ~l~~~~~l~~~p~--~i~~L~~L~~L 694 (1448)
++++|+ +..+.. .+..+++|+.|
T Consensus 94 ~L~~N~-I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 94 YLSNNK-ISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp E-TTS----SCCCCGGGGG-TT--EE
T ss_pred ECcCCc-CCChHHhHHHHcCCCccee
Confidence 999998 655432 24445555555
No 58
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.3e-06 Score=104.44 Aligned_cols=193 Identities=16% Similarity=0.176 Sum_probs=114.2
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.+++|.+..++.+..++.... -.+.+.++|++|+||||+|+.+++.....+.+...+|.+.+.. .+.......+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCce
Confidence 357999998999988886542 3466799999999999999999874332222222233221110 0000000000
Q ss_pred HhccCCCCCCCCHHHHHHHHHHH-----hCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcC-chhhhhcc-
Q 048507 268 RSVTKQTIDDSDLNLLQEELKKK-----LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTR-NQEVADIM- 340 (1448)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR-~~~v~~~~- 340 (1448)
..+... .....+.+.+ +.+. ..+++-++|+|+++......+..+...+......+.+|++|. ...+...+
T Consensus 88 ~el~~~--~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~ 164 (504)
T PRK14963 88 LEIDAA--SNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTIL 164 (504)
T ss_pred EEeccc--ccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHh
Confidence 011110 1122232222 2222 224567999999987766667777777766545556555554 33333322
Q ss_pred CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchHHH
Q 048507 341 GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPLAA 389 (1448)
Q Consensus 341 ~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal 389 (1448)
.....+++.+++.++....+.+.+.... ...++.+..|++.++|.+--+
T Consensus 165 SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 165 SRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred cceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 2245799999999999999887653322 335677889999999988544
No 59
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.6e-05 Score=94.62 Aligned_cols=190 Identities=14% Similarity=0.155 Sum_probs=112.1
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.++||.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++...... |+... ....-...+.+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~~-pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTST-PCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCCC-CCccCHHHHHHh
Confidence 468999999999999996542 246889999999999999999986421111 11000 000001111111
Q ss_pred HhccC-----CCCCCCCHHHHHHHHHHH----hCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchh-hh
Q 048507 268 RSVTK-----QTIDDSDLNLLQEELKKK----LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQE-VA 337 (1448)
Q Consensus 268 ~~l~~-----~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~ 337 (1448)
..-.. ........+++.+.+... ..+++-++|+|+++..+......+...+.....+.++|++|.+.. +.
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 10000 000112233332222211 235667999999987665666666666655555667777776532 22
Q ss_pred hc-cCCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchHHH
Q 048507 338 DI-MGTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPLAA 389 (1448)
Q Consensus 338 ~~-~~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal 389 (1448)
.. ......+++++++.++..+.+.+.+.... ....+....|++.++|.+-.+
T Consensus 163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 11 12346799999999999888876543222 345667788999999977443
No 60
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.31 E-value=1.4e-05 Score=85.20 Aligned_cols=172 Identities=19% Similarity=0.300 Sum_probs=105.4
Q ss_pred ccccCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHH
Q 048507 184 LVTEAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLT 263 (1448)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 263 (1448)
++...+++|.+.-+..+++ ++....+.+||++|+||||||+.+....+... ..||..+....-..-.
T Consensus 140 yvGQ~hlv~q~gllrs~ie---------q~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dv 206 (554)
T KOG2028|consen 140 YVGQSHLVGQDGLLRSLIE---------QNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDV 206 (554)
T ss_pred hcchhhhcCcchHHHHHHH---------cCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHH
Confidence 4445566665444433332 23567788999999999999999997433222 5567766655444445
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEE--EcCchhhhh---
Q 048507 264 KTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIV--TTRNQEVAD--- 338 (1448)
Q Consensus 264 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v~~--- 338 (1448)
++|+++... ...+..+|.+|.+|.|..-+..+-+. .+|.-..|.-++| ||.++...-
T Consensus 207 R~ife~aq~---------------~~~l~krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~a 268 (554)
T KOG2028|consen 207 RDIFEQAQN---------------EKSLTKRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAA 268 (554)
T ss_pred HHHHHHHHH---------------HHhhhcceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHH
Confidence 555544321 12345789999999996543322222 3455557877777 777765421
Q ss_pred ccCCcceEeCCCCCHHHHHHHHhhcc--cCC-c-----------hhhHHHHHHHHHhcCCch
Q 048507 339 IMGTASAYQLKKLSIDDCLAVVAQHS--LGS-D-----------KLLEEIGKKIVAKCDGLP 386 (1448)
Q Consensus 339 ~~~~~~~~~l~~l~~~~a~~l~~~~~--~~~-~-----------~~~~~~~~~i~~~~~g~P 386 (1448)
.+.-..++.|+.|..++...++.+.. .++ . .....+.+-++..|+|-.
T Consensus 269 LlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 269 LLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred HHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 12334689999999999888877621 111 0 123445666777788765
No 61
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.4e-07 Score=103.06 Aligned_cols=186 Identities=15% Similarity=0.088 Sum_probs=99.7
Q ss_pred hcccCCccceeeecccccccc--cCcccCCCCCccEEEcccCCCccccCCC-CCCCCCccEEEecCccCcc-ccccccCC
Q 048507 1178 RLDNNTSLEIIRIAYCENLKI--LPSGLHNLRQLQEIEIRRCGNLVSFPKG-GLPGAKLTRLEISDCNRLE-ALPKGLHN 1253 (1448)
Q Consensus 1178 ~~~~l~~L~~L~Ls~n~~~~~--~p~~l~~l~~L~~L~L~~~~~l~~lp~~-~~~~~~L~~L~l~~~~~~~-~~p~~l~~ 1253 (1448)
....|++++.||||.|-+... +-.....||+|+.|+|+.|...--.... ...++.|+.|.|++|.+.- .+-..+..
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 455566666666666544331 1233445666666666665332211110 1124567777777776542 22233455
Q ss_pred CCcccceec-ccC-C-CccccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecCCCcCccccccccccCC
Q 048507 1254 LKSLQELRI-GVE-L-PSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDMVSFPLEDKRLGT 1330 (1448)
Q Consensus 1254 l~~L~~L~l-~~~-l-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~p~~~~~~~~ 1330 (1448)
+++|+.|++ .|+ + ........+..|++|||++|+.+. .........++.|..|+++.|.-....+|+- ....
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~---~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~--~s~~ 295 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID---FDQGYKVGTLPGLNQLNLSSTGIASIAEPDV--ESLD 295 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc---cccccccccccchhhhhccccCcchhcCCCc--cchh
Confidence 667777777 332 1 111223456778888888887551 1122346678888888888864322223321 1112
Q ss_pred CCCCCCCcCeEEEccCCC--CccccccccCCCCCCeEeecC
Q 048507 1331 ALPLPASLTTLWIYNFPN--LERLSSSIVDLQNLTELRLLN 1369 (1448)
Q Consensus 1331 ~~~~~~~L~~L~l~~~~~--l~~lp~~~~~l~~L~~L~l~~ 1369 (1448)
....+++|++|++..|+. ..++. .+..+++|+.|.+..
T Consensus 296 kt~~f~kL~~L~i~~N~I~~w~sl~-~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 296 KTHTFPKLEYLNISENNIRDWRSLN-HLRTLENLKHLRITL 335 (505)
T ss_pred hhcccccceeeecccCccccccccc-hhhccchhhhhhccc
Confidence 234578899999998653 22332 244556667766543
No 62
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.31 E-value=4.6e-07 Score=108.36 Aligned_cols=108 Identities=31% Similarity=0.460 Sum_probs=92.5
Q ss_pred hhhhcccCceeEEEeCCCCccccCccccCCc-cceEEeccCccccccChhhhccccccEEeccCCchhhcccccccccCC
Q 048507 588 LTELFKLQRLRVFSLRGYRIDELPDSIGDLR-YFRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAK 666 (1448)
Q Consensus 588 ~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~-~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~~ 666 (1448)
+..+..++.++.|++.+|.++++|.....+. +|+.|++++|.+..+|..+..+++|+.|++++| .+..+|...+.+++
T Consensus 109 ~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~ 187 (394)
T COG4886 109 ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSN 187 (394)
T ss_pred chhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhh
Confidence 3344566889999999999999998888885 999999999999999999999999999999996 67888887779999
Q ss_pred CCeeeecCCCCccccccccCcccccccccce
Q 048507 667 LHHLKNSNTKSLEEMPVGIGRLTSLQTLCNF 697 (1448)
Q Consensus 667 L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~ 697 (1448)
|+.|++++|. +..+|..++.+..|++|...
T Consensus 188 L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 188 LNNLDLSGNK-ISDLPPEIELLSALEELDLS 217 (394)
T ss_pred hhheeccCCc-cccCchhhhhhhhhhhhhhc
Confidence 9999999999 88999877777778887543
No 63
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=8.2e-06 Score=100.27 Aligned_cols=193 Identities=13% Similarity=0.126 Sum_probs=113.1
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.++||.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++........... .+... .....+.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~---pCg~C----~sC~~i~ 83 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTAT---PCGVC----SSCVEIA 83 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCC---CCCCc----hHHHHHh
Confidence 468999999999999886532 24566899999999999999998743211110000 00000 0000000
Q ss_pred Hhc-----cCCCCCCCCHHHH---HHHHHH-HhCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCc-hhhh
Q 048507 268 RSV-----TKQTIDDSDLNLL---QEELKK-KLSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRN-QEVA 337 (1448)
Q Consensus 268 ~~l-----~~~~~~~~~~~~~---~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~ 337 (1448)
... ..........+.+ .+.+.. ...+++-++|+|+++......+..+.+.+.......++|++|.+ ..+.
T Consensus 84 ~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl 163 (944)
T PRK14949 84 QGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (944)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhch
Confidence 000 0000001112222 222211 12356779999999887767777777766655556676665554 3333
Q ss_pred hcc-CCcceEeCCCCCHHHHHHHHhhcccCC-chhhHHHHHHHHHhcCCchH-HHHHH
Q 048507 338 DIM-GTASAYQLKKLSIDDCLAVVAQHSLGS-DKLLEEIGKKIVAKCDGLPL-AAQTL 392 (1448)
Q Consensus 338 ~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~-~~~~~~~~~~i~~~~~g~PL-al~~~ 392 (1448)
..+ .-...|++++++.++..+++.+.+... ....++.+..|++.++|.|- |+..+
T Consensus 164 ~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 164 VTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred HHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 221 223679999999999998887754321 23345678889999999885 44443
No 64
>PF13173 AAA_14: AAA domain
Probab=98.28 E-value=2.3e-06 Score=83.04 Aligned_cols=119 Identities=22% Similarity=0.269 Sum_probs=78.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCcc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKK 295 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 295 (1448)
+++.|.|+.|+||||++++++.+.. ....+++++..+........ .+ ..+.+.+....++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD----------------PD-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh----------------hh-hHHHHHHhhccCC
Confidence 6899999999999999999987432 33456777766542211000 00 2233444444478
Q ss_pred EEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchhhhhc-----c-CCcceEeCCCCCHHHH
Q 048507 296 FLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQEVADI-----M-GTASAYQLKKLSIDDC 356 (1448)
Q Consensus 296 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~-----~-~~~~~~~l~~l~~~~a 356 (1448)
.+|++|++... .+|......+.+..+..+|++|+........ + +....+++.||+-.|.
T Consensus 63 ~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 89999999665 5677776666665567899999987655422 1 2234688999988763
No 65
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.28 E-value=5.5e-08 Score=109.38 Aligned_cols=171 Identities=23% Similarity=0.296 Sum_probs=103.4
Q ss_pred EEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEecCcc
Q 048507 1163 SLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEISDCN 1242 (1448)
Q Consensus 1163 ~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~~~~ 1242 (1448)
..+++.|. ...+|..+..+..|+.+.+..|. +..+|..+.++..|..|+|+.| .+..+|..+..+ -|+.|-+++ +
T Consensus 79 ~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~l-pLkvli~sN-N 153 (722)
T KOG0532|consen 79 FADLSRNR-FSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDL-PLKVLIVSN-N 153 (722)
T ss_pred hhhccccc-cccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccc-hhhcCChhhhcC-cceeEEEec-C
Confidence 34555543 34566677777778877777743 4557777777888888888874 556677766655 477777776 4
Q ss_pred CccccccccCCCCcccceec-ccCCCccccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecCCCcCccc
Q 048507 1243 RLEALPKGLHNLKSLQELRI-GVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDMVSF 1321 (1448)
Q Consensus 1243 ~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~ 1321 (1448)
+++.+|+.++.+..|..||. +|++.+++. .+..+.+|+.|.+.. |.+..+
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~nei~slps---------------------------ql~~l~slr~l~vrR--n~l~~l 204 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNEIQSLPS---------------------------QLGYLTSLRDLNVRR--NHLEDL 204 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhhhhhchH---------------------------HhhhHHHHHHHHHhh--hhhhhC
Confidence 47777777777777777777 555544432 333444555555554 234444
Q ss_pred cccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCC
Q 048507 1322 PLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFP 1377 (1448)
Q Consensus 1322 p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp 1377 (1448)
|++. . .-.|..||+++ |++..||-.|..+..|+.|-+.+++ |++-|
T Consensus 205 p~El-------~-~LpLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNP-LqSPP 250 (722)
T KOG0532|consen 205 PEEL-------C-SLPLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNP-LQSPP 250 (722)
T ss_pred CHHH-------h-CCceeeeeccc-CceeecchhhhhhhhheeeeeccCC-CCCCh
Confidence 4332 1 23455566655 4566666666666666666666544 44444
No 66
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.27 E-value=4.4e-06 Score=84.53 Aligned_cols=125 Identities=18% Similarity=0.111 Sum_probs=73.1
Q ss_pred eccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhc
Q 048507 191 YGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSV 270 (1448)
Q Consensus 191 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 270 (1448)
+||+..++.+...+... ..+.+.|+|++|+|||++|+++++... ..-..++++.+............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888999998888542 346888999999999999999998432 222346677665543322221111100
Q ss_pred cCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCCh---hhHhhhcccccCC---CCCcEEEEEcCchh
Q 048507 271 TKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENY---NDWVRLSRPFEAG---APGSKIIVTTRNQE 335 (1448)
Q Consensus 271 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~---~~~~~l~~~l~~~---~~gs~ilvTtR~~~ 335 (1448)
............++.++|+||++.... ..+......+... ..+.+||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 001111222345678999999975321 2223333332221 35778888888653
No 67
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=3.2e-05 Score=88.53 Aligned_cols=172 Identities=17% Similarity=0.159 Sum_probs=115.1
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
..+.+|+.+++++...|...-. +....-+.|+|.+|+|||+.++.+++..+....=..+++|++....+..+++..|+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 17 EELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 3488999999999998876432 22233488999999999999999998432221111279999999999999999999
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhC--CccEEEEEecCCCCChh---hHhhhcccccCCCCCcEE--EEEcCchhhhh--
Q 048507 268 RSVTKQTIDDSDLNLLQEELKKKLS--QKKFLLVLDDVWNENYN---DWVRLSRPFEAGAPGSKI--IVTTRNQEVAD-- 338 (1448)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~---~~~~l~~~l~~~~~gs~i--lvTtR~~~v~~-- 338 (1448)
++++..........+..+.+.+.+. ++.++||||+++.-... .+-.+.+..... +++| |..+-+.....
T Consensus 95 ~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 95 NKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHHHHHh
Confidence 9997554455666666677777664 57899999999543211 122222222222 3443 33444333222
Q ss_pred ------ccCCcceEeCCCCCHHHHHHHHhhcc
Q 048507 339 ------IMGTASAYQLKKLSIDDCLAVVAQHS 364 (1448)
Q Consensus 339 ------~~~~~~~~~l~~l~~~~a~~l~~~~~ 364 (1448)
.++.. .+...|-+.+|-..++..++
T Consensus 173 d~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~ 203 (366)
T COG1474 173 DPRVKSSLGPS-EIVFPPYTAEELYDILRERV 203 (366)
T ss_pred hhhhhhccCcc-eeeeCCCCHHHHHHHHHHHH
Confidence 22222 37789999999999888765
No 68
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=9.8e-06 Score=96.20 Aligned_cols=195 Identities=13% Similarity=0.108 Sum_probs=113.3
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccc--cceEEEEEeCCccCHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDH--FDLKAWTCVSDDFDVKGLTKT 265 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~ 265 (1448)
.++||.+..++.+..++..+. -.+.+.++|..|+||||+|+.+++....... -.....-.+.. -...+.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~----C~sC~~ 86 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQ----CRACTE 86 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcc----cHHHHH
Confidence 468999999999999996542 3467789999999999999998863221100 00000000000 011111
Q ss_pred HHHh-----ccCCCCCCCCHHHHHHHHHHH----hCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEE-EcCchh
Q 048507 266 ILRS-----VTKQTIDDSDLNLLQEELKKK----LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIV-TTRNQE 335 (1448)
Q Consensus 266 i~~~-----l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~ 335 (1448)
|... +.........++++.+.+... ..++.-++|+|+++..+...+..+...+.....++++|+ ||....
T Consensus 87 I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~k 166 (700)
T PRK12323 87 IDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQK 166 (700)
T ss_pred HHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHh
Confidence 1100 000000112334433333222 135567999999988776777777777665555666555 554444
Q ss_pred hhhccC-CcceEeCCCCCHHHHHHHHhhcccCC-chhhHHHHHHHHHhcCCchHHHHH
Q 048507 336 VADIMG-TASAYQLKKLSIDDCLAVVAQHSLGS-DKLLEEIGKKIVAKCDGLPLAAQT 391 (1448)
Q Consensus 336 v~~~~~-~~~~~~l~~l~~~~a~~l~~~~~~~~-~~~~~~~~~~i~~~~~g~PLal~~ 391 (1448)
+...+. -...+.++.++.++..+.+.+.+... .....+..+.|++.++|.|.....
T Consensus 167 LlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 167 IPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred hhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 443221 23579999999999988877654221 133455678899999998864433
No 69
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.23 E-value=1.1e-06 Score=92.76 Aligned_cols=49 Identities=29% Similarity=0.386 Sum_probs=33.1
Q ss_pred eEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcc
Q 048507 189 QVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKR 240 (1448)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 240 (1448)
+||||+++++++...+... .....+.+.|+|.+|+|||+++++++....
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999522 344568999999999999999999987443
No 70
>PLN03150 hypothetical protein; Provisional
Probab=98.23 E-value=1.1e-06 Score=109.77 Aligned_cols=93 Identities=24% Similarity=0.355 Sum_probs=84.6
Q ss_pred ceeEEEeCCCCcc-ccCccccCCccceEEeccCcccc-ccChhhhccccccEEeccCCchhhcccccccccCCCCeeeec
Q 048507 596 RLRVFSLRGYRID-ELPDSIGDLRYFRYLNLSGTEIR-TLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNS 673 (1448)
Q Consensus 596 ~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~~L~~L~l~ 673 (1448)
.++.|+|++|.+. .+|..|+.+++|++|+|++|.+. .+|..++.+++|+.|+|++|...+.+|..+++|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4889999999986 67999999999999999999998 899999999999999999998888999999999999999999
Q ss_pred CCCCccccccccCcc
Q 048507 674 NTKSLEEMPVGIGRL 688 (1448)
Q Consensus 674 ~~~~l~~~p~~i~~L 688 (1448)
+|.+.+.+|..++.+
T Consensus 499 ~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 499 GNSLSGRVPAALGGR 513 (623)
T ss_pred CCcccccCChHHhhc
Confidence 999777899877653
No 71
>PLN03150 hypothetical protein; Provisional
Probab=98.23 E-value=1e-06 Score=109.90 Aligned_cols=94 Identities=14% Similarity=0.096 Sum_probs=85.3
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEec
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEIS 1239 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~ 1239 (1448)
.++.|+|++|...+.+|..++.+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|+..+.+|..+..+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47888999999989999999999999999999999999999999999999999999998888999988899999999999
Q ss_pred CccCccccccccCC
Q 048507 1240 DCNRLEALPKGLHN 1253 (1448)
Q Consensus 1240 ~~~~~~~~p~~l~~ 1253 (1448)
+|++.+.+|..+..
T Consensus 499 ~N~l~g~iP~~l~~ 512 (623)
T PLN03150 499 GNSLSGRVPAALGG 512 (623)
T ss_pred CCcccccCChHHhh
Confidence 99999999987754
No 72
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.23 E-value=3.1e-06 Score=95.45 Aligned_cols=32 Identities=16% Similarity=0.379 Sum_probs=15.9
Q ss_pred CCccEEEcccCCCccccCCCCCCCCCccEEEecCc
Q 048507 1207 RQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEISDC 1241 (1448)
Q Consensus 1207 ~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~~~ 1241 (1448)
++|++|++++|..+. +|..+. .+|+.|+++.|
T Consensus 156 sSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCccc-Cccccc--ccCcEEEeccc
Confidence 356666666655432 333222 35666665543
No 73
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=1.5e-05 Score=94.76 Aligned_cols=192 Identities=17% Similarity=0.204 Sum_probs=113.5
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccce-EEEEEeCCccCHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDL-KAWTCVSDDFDVKGLTKTI 266 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i 266 (1448)
.+++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.+++.......... ..+..+... .....+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHH
Confidence 357899999998888775432 2467889999999999999999874321111000 000001110 001111
Q ss_pred HHhccC-----CCCCCCCHHHHHHHHHHH----hCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEE-EcCchhh
Q 048507 267 LRSVTK-----QTIDDSDLNLLQEELKKK----LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIV-TTRNQEV 336 (1448)
Q Consensus 267 ~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v 336 (1448)
...... ........+++.+.+... ..+++-++|+|+++......+..+...+......+.+|+ ||+...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 110000 000122333333333222 235677999999988766778888777766555666554 5555555
Q ss_pred hhccC-CcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchHH
Q 048507 337 ADIMG-TASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPLA 388 (1448)
Q Consensus 337 ~~~~~-~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PLa 388 (1448)
...+. ....+++.+++.++....+.+.+.... ...++....|++.++|.+--
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARD 225 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 44332 235799999999999999887654322 33456778899999997743
No 74
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.20 E-value=1.1e-06 Score=72.10 Aligned_cols=59 Identities=27% Similarity=0.342 Sum_probs=51.3
Q ss_pred ccceEEeccCccccccC-hhhhccccccEEeccCCchhhcccccccccCCCCeeeecCCC
Q 048507 618 RYFRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTK 676 (1448)
Q Consensus 618 ~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~~L~~L~l~~~~ 676 (1448)
++|++|++++|+|+.+| ..|.++++|++|++++|.....-|..|..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 47999999999999998 688999999999999975444444578999999999999997
No 75
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=3.3e-06 Score=97.82 Aligned_cols=188 Identities=14% Similarity=0.137 Sum_probs=111.2
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.++||.+..+..+..++..+. -.+.+.++|+.|+||||+|+.+++......... ...+....+- +.+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~---~~pCg~C~sC----~~i~ 85 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIG---NEPCNECTSC----LEIT 85 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccC---ccccCCCcHH----HHHH
Confidence 457999999999999886542 235688999999999999999987432111100 0011111111 1111
Q ss_pred HhccCCC-----CCCCCHHHH---HHHHHHH-hCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEE-EcCchhhh
Q 048507 268 RSVTKQT-----IDDSDLNLL---QEELKKK-LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIV-TTRNQEVA 337 (1448)
Q Consensus 268 ~~l~~~~-----~~~~~~~~~---~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~ 337 (1448)
....... ......+.+ .+.+... ..++.-++|+|+++......+..+...+........+|. ||....+.
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 1111000 011122222 2222211 235667999999988777778887776655444555554 44444443
Q ss_pred hcc-CCcceEeCCCCCHHHHHHHHhhcccCC-chhhHHHHHHHHHhcCCchH
Q 048507 338 DIM-GTASAYQLKKLSIDDCLAVVAQHSLGS-DKLLEEIGKKIVAKCDGLPL 387 (1448)
Q Consensus 338 ~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~-~~~~~~~~~~i~~~~~g~PL 387 (1448)
... .-...|.+.+++.++..+.+.+.+... ....++....|++.++|.+-
T Consensus 166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHH
Confidence 332 223579999999999888887754322 23456778889999999874
No 76
>PLN03025 replication factor C subunit; Provisional
Probab=98.20 E-value=1e-05 Score=92.59 Aligned_cols=179 Identities=13% Similarity=0.161 Sum_probs=102.3
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccc-eEEEEEeCCccCHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFD-LKAWTCVSDDFDVKGLTKTI 266 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 266 (1448)
.+++|.++.++.+..++..+ ..+-+.++|++|+||||+|+.+++... ...|. .++-++.+...... ..+.+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHHHH
Confidence 35789988888888877433 334567999999999999999987421 11221 11112222211111 11111
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCch-hhhhcc-CCcc
Q 048507 267 LRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQ-EVADIM-GTAS 344 (1448)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~-~~~~ 344 (1448)
++........ .-.++.-++|+|+++.........+...+......+++++++... .+...+ ....
T Consensus 85 i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 85 IKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 1111000000 001346799999997765544455544444444567777766432 222211 1235
Q ss_pred eEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchH
Q 048507 345 AYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPL 387 (1448)
Q Consensus 345 ~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PL 387 (1448)
.+++++++.++....+...+.... ...++....|++.++|..-
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMR 195 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 789999999998888876553222 3345677889999998653
No 77
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.19 E-value=2.3e-05 Score=96.88 Aligned_cols=199 Identities=22% Similarity=0.240 Sum_probs=113.9
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccc---ceEEEEEeCCc---cCHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHF---DLKAWTCVSDD---FDVKG 261 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~---~~~~~ 261 (1448)
+.++|++..+..+.+.+... ....+.|+|++|+||||+|+.+++.......+ ...-|+.+... .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 35889999999988877432 34578999999999999999998654322222 12234433221 12222
Q ss_pred HHHH---------------HHHhccCC------------------CCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCCh
Q 048507 262 LTKT---------------ILRSVTKQ------------------TIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENY 308 (1448)
Q Consensus 262 ~~~~---------------i~~~l~~~------------------~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~ 308 (1448)
+... .+...+.. ..+.-+ ...+..+.+.+.++++.++-|+.|..+.
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 2111 11111110 001111 2356777888888899999887877666
Q ss_pred hhHhhhcccccCCCCCcEEEE--EcCchhh-hhcc-CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcC
Q 048507 309 NDWVRLSRPFEAGAPGSKIIV--TTRNQEV-ADIM-GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCD 383 (1448)
Q Consensus 309 ~~~~~l~~~l~~~~~gs~ilv--TtR~~~v-~~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~ 383 (1448)
..|..+...+....+...++| ||++... ...+ .-...+.+.+++.+|.+.++.+.+.... ...+++.+.|.+.+.
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~ 386 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYTI 386 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC
Confidence 667777666655544444555 5665432 1111 1124678899999999999987653221 122344455555554
Q ss_pred CchHHHHHHH
Q 048507 384 GLPLAAQTLG 393 (1448)
Q Consensus 384 g~PLal~~~~ 393 (1448)
.-+-|+..++
T Consensus 387 ~gRraln~L~ 396 (615)
T TIGR02903 387 EGRKAVNILA 396 (615)
T ss_pred cHHHHHHHHH
Confidence 4445554443
No 78
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.19 E-value=2.1e-05 Score=91.23 Aligned_cols=179 Identities=13% Similarity=0.176 Sum_probs=103.8
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEe--CCccCHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCV--SDDFDVKGLTKT 265 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~ 265 (1448)
.+++|+++.++.+..++... ..+.+.++|.+|+||||+|+.+++... ...+. ..++.+ +....... .++
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~~~-~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGIDV-IRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccchHH-HHH
Confidence 35889999999999998543 334579999999999999999987421 11121 112222 22111111 111
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCch-hhhhcc-CCc
Q 048507 266 ILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQ-EVADIM-GTA 343 (1448)
Q Consensus 266 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~-~~~ 343 (1448)
.+..+..... .....+-+||+|+++.........+...+......+++|+++... .+.... ...
T Consensus 88 ~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 88 KIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 1111100000 001235689999996654444445555444444556777766432 221111 123
Q ss_pred ceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchHHH
Q 048507 344 SAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPLAA 389 (1448)
Q Consensus 344 ~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal 389 (1448)
..+++.+++.++....+...+.... ...++.+..+++.++|.+--+
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 4689999999998888876653322 344667888999999987653
No 79
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=2.3e-05 Score=93.85 Aligned_cols=184 Identities=17% Similarity=0.138 Sum_probs=111.3
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccc-------------------cccceE
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQ-------------------DHFDLK 248 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~~ 248 (1448)
.+++|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++..... +.|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 357899999999999886532 34567899999999999999998632110 011122
Q ss_pred EEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH-hCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEE
Q 048507 249 AWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKK-LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKI 327 (1448)
Q Consensus 249 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 327 (1448)
+++.......+. +..++.+.+... ..+++-++|+|+++......+..+...+......+.+
T Consensus 91 ieidaas~~gvd------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGVE------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 222221111111 112222222211 2356679999999776666677777766665556655
Q ss_pred EE-EcCchhhhhcc-CCcceEeCCCCCHHHHHHHHhhcccC-CchhhHHHHHHHHHhcCCch-HHHHHHHh
Q 048507 328 IV-TTRNQEVADIM-GTASAYQLKKLSIDDCLAVVAQHSLG-SDKLLEEIGKKIVAKCDGLP-LAAQTLGG 394 (1448)
Q Consensus 328 lv-TtR~~~v~~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~-~~~~~~~~~~~i~~~~~g~P-Lal~~~~~ 394 (1448)
|+ ||....+...+ .-...+++++++.++....+.+.+.. .....++....|++.++|.+ -|+..+-.
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 54 55433343222 22468999999999988777654321 12344567788999999966 45555543
No 80
>PRK08727 hypothetical protein; Validated
Probab=98.16 E-value=1.5e-05 Score=86.17 Aligned_cols=147 Identities=16% Similarity=0.107 Sum_probs=88.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCcc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKK 295 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 295 (1448)
..+.|+|..|+|||.||+++++.. ......+.|+++.+ ....+. +.+.. + .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~--~~~~~~~~y~~~~~------~~~~~~-----------------~~~~~-l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAA--EQAGRSSAYLPLQA------AAGRLR-----------------DALEA-L-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEeHHH------hhhhHH-----------------HHHHH-H-hcC
Confidence 569999999999999999998743 22233566676422 111111 11111 1 223
Q ss_pred EEEEEecCCCCC-hhhHhh-hcccccC-CCCCcEEEEEcCch---------hhhhccCCcceEeCCCCCHHHHHHHHhhc
Q 048507 296 FLLVLDDVWNEN-YNDWVR-LSRPFEA-GAPGSKIIVTTRNQ---------EVADIMGTASAYQLKKLSIDDCLAVVAQH 363 (1448)
Q Consensus 296 ~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~l~~~~a~~l~~~~ 363 (1448)
-+||+||+.... ...|.. +...+.. ...|..||+|++.. ++...+.....+++++++.++-.+++.++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 589999996432 122322 2221111 12466799999852 12223334468899999999999999886
Q ss_pred ccCC-chhhHHHHHHHHHhcCCchHHH
Q 048507 364 SLGS-DKLLEEIGKKIVAKCDGLPLAA 389 (1448)
Q Consensus 364 ~~~~-~~~~~~~~~~i~~~~~g~PLal 389 (1448)
+... -...+++..-|++.++|-.-.+
T Consensus 175 a~~~~l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRGLALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcCCCCCHHHHHHHHHhCCCCHHHH
Confidence 5432 2445677788888888765444
No 81
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=2.6e-05 Score=88.93 Aligned_cols=196 Identities=14% Similarity=0.160 Sum_probs=115.8
Q ss_pred cCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc--ccceEEEEEeCCccCHHHHHH
Q 048507 187 EAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQD--HFDLKAWTCVSDDFDVKGLTK 264 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~~~~~~~~~ 264 (1448)
...++|-++..+.+...+..+. -...+.|+|+.|+||||+|..+++..-... .+.... ...........+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHH
Confidence 4568999999999999996542 346788999999999999999886321110 011110 000111111223
Q ss_pred HHHHh-------ccCC---C----CCCCCHHHHHHHHHHHh-----CCccEEEEEecCCCCChhhHhhhcccccCCCCCc
Q 048507 265 TILRS-------VTKQ---T----IDDSDLNLLQEELKKKL-----SQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGS 325 (1448)
Q Consensus 265 ~i~~~-------l~~~---~----~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 325 (1448)
.+... +... . .....++++. .+.+.+ .+++-++|+|+++..+......+...+.....++
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 33221 1000 0 0112234433 333333 2566799999998776666666666655544455
Q ss_pred EE-EEEcCchhhhhccC-CcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCchHHHHHH
Q 048507 326 KI-IVTTRNQEVADIMG-TASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGLPLAAQTL 392 (1448)
Q Consensus 326 ~i-lvTtR~~~v~~~~~-~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 392 (1448)
.+ ++|++...+..... -...+++.+++.++..+++...+.... ..++.+..|++.++|.|.....+
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 54 44544433433222 235899999999999999987432222 33556788999999999865544
No 82
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.15 E-value=7.8e-07 Score=91.84 Aligned_cols=105 Identities=28% Similarity=0.365 Sum_probs=68.7
Q ss_pred hhhhhhcccCceeEEEeCCCCccccCccccCCccceEEeccCccccccChhhhccccccEEeccCCchhhcccccccccC
Q 048507 586 SILTELFKLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLA 665 (1448)
Q Consensus 586 ~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~ 665 (1448)
.+-.+..-.+.+|+|++++|.|..+-. +..|++|+.||||+|.++.+-..-.+|-|.++|.|+.| .+..+ +++++|-
T Consensus 298 ~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N-~iE~L-SGL~KLY 374 (490)
T KOG1259|consen 298 QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN-KIETL-SGLRKLY 374 (490)
T ss_pred hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh-hHhhh-hhhHhhh
Confidence 333444455677777777777766533 66677777777777777766666666777777777774 45555 4567777
Q ss_pred CCCeeeecCCCCccccc--cccCcccccccc
Q 048507 666 KLHHLKNSNTKSLEEMP--VGIGRLTSLQTL 694 (1448)
Q Consensus 666 ~L~~L~l~~~~~l~~~p--~~i~~L~~L~~L 694 (1448)
+|..||+++|+ +..+- .+||+|+-|+++
T Consensus 375 SLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 375 SLVNLDLSSNQ-IEELDEVNHIGNLPCLETL 404 (490)
T ss_pred hheeccccccc-hhhHHHhcccccccHHHHH
Confidence 77777777777 55554 347777777766
No 83
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=2.6e-05 Score=92.50 Aligned_cols=182 Identities=15% Similarity=0.209 Sum_probs=107.9
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccc-------------------cceE
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDH-------------------FDLK 248 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 248 (1448)
+++||.+..++.+...+..+. -.+.+.++|++|+||||+|+.+++....... +..+
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 458999888888888775432 2356789999999999999999864211110 0011
Q ss_pred EEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH-----hCCccEEEEEecCCCCChhhHhhhcccccCCCC
Q 048507 249 AWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKK-----LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAP 323 (1448)
Q Consensus 249 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 323 (1448)
..++.+.. ...+.+. .+.+. ..+++-++|+|+++.-.......+...+.....
T Consensus 89 ~el~aa~~---------------------~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~ 146 (472)
T PRK14962 89 IELDAASN---------------------RGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPS 146 (472)
T ss_pred EEEeCccc---------------------CCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCC
Confidence 12222111 1122222 12221 224567999999966544445556555554434
Q ss_pred CcEEEE-EcCchhhhhcc-CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCC-chHHHHHHHhhh
Q 048507 324 GSKIIV-TTRNQEVADIM-GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDG-LPLAAQTLGGLL 396 (1448)
Q Consensus 324 gs~ilv-TtR~~~v~~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g-~PLal~~~~~~l 396 (1448)
...+|+ |+....+...+ .....+++.+++.++....+.+.+.... ...+++...|++.++| .+.|+..+....
T Consensus 147 ~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 147 HVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred cEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 444444 44333343322 2335789999999998888877653222 3446677889988765 567777765543
No 84
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.13 E-value=2.3e-06 Score=102.37 Aligned_cols=180 Identities=25% Similarity=0.340 Sum_probs=115.5
Q ss_pred cccCCccceeeecccccccccCcccCCCC-CccEEEcccCCCccccCCCCCCCCCccEEEecCccCccccccccCCCCcc
Q 048507 1179 LDNNTSLEIIRIAYCENLKILPSGLHNLR-QLQEIEIRRCGNLVSFPKGGLPGAKLTRLEISDCNRLEALPKGLHNLKSL 1257 (1448)
Q Consensus 1179 ~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~-~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L 1257 (1448)
+..++.++.|++.+|.+.. +|.....+. +|+.|++++| .+..+|..+..+++|+.|++++|+ +..+|.....++.|
T Consensus 112 ~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L 188 (394)
T COG4886 112 LLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNL 188 (394)
T ss_pred hhcccceeEEecCCccccc-Cccccccchhhccccccccc-chhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhh
Confidence 3344667777776654433 444444453 7777777763 455565556667777777777765 44555555567777
Q ss_pred cceec-ccCCCccccC-CCCCccceeeecccccccccccccCCccccCCCccEEEEecCCCcCccccccccccCCCCCCC
Q 048507 1258 QELRI-GVELPSLEED-GLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDMVSFPLEDKRLGTALPLP 1335 (1448)
Q Consensus 1258 ~~L~l-~~~l~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~p~~~~~~~~~~~~~ 1335 (1448)
+.|++ ++++..++.. +.+..|++|.+++|.. ......+..+.++..|.+.+ +.+..++ ..+..+
T Consensus 189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~-----~~~~~~~~~~~~l~~l~l~~--n~~~~~~-------~~~~~l 254 (394)
T COG4886 189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSI-----IELLSSLSNLKNLSGLELSN--NKLEDLP-------ESIGNL 254 (394)
T ss_pred hheeccCCccccCchhhhhhhhhhhhhhcCCcc-----eecchhhhhcccccccccCC--ceeeecc-------chhccc
Confidence 77777 6667777665 4666688888887742 23344566777777777665 3333322 334677
Q ss_pred CCcCeEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCC
Q 048507 1336 ASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFP 1377 (1448)
Q Consensus 1336 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp 1377 (1448)
.+|+.|++++ +.+..++. +..+.+|+.|+++++.....+|
T Consensus 255 ~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 255 SNLETLDLSN-NQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccceecccc-cccccccc-ccccCccCEEeccCccccccch
Confidence 7788888888 56777776 7788888888888855443333
No 85
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.12 E-value=5.4e-05 Score=79.47 Aligned_cols=90 Identities=17% Similarity=0.234 Sum_probs=63.6
Q ss_pred CccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCch-hhhhcc-CCcceEeCCCCCHHHHHHHHhhcccCCchh
Q 048507 293 QKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQ-EVADIM-GTASAYQLKKLSIDDCLAVVAQHSLGSDKL 370 (1448)
Q Consensus 293 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~ 370 (1448)
+.+-++|+|+++.......+.+...+......+.+|++|++. .+...+ .....+++.+++.++..+.+.+.. .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~g-----i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQG-----I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcC-----C
Confidence 456789999997765556666766666555566777766643 222222 223589999999999999998862 2
Q ss_pred hHHHHHHHHHhcCCchH
Q 048507 371 LEEIGKKIVAKCDGLPL 387 (1448)
Q Consensus 371 ~~~~~~~i~~~~~g~PL 387 (1448)
.++.+..|++.++|.|.
T Consensus 170 ~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 SEEAAELLLALAGGSPG 186 (188)
T ss_pred CHHHHHHHHHHcCCCcc
Confidence 35678899999999885
No 86
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=1.4e-05 Score=91.70 Aligned_cols=194 Identities=14% Similarity=0.134 Sum_probs=113.9
Q ss_pred cCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEE------EEEeCCccCHH
Q 048507 187 EAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKA------WTCVSDDFDVK 260 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~------wv~~~~~~~~~ 260 (1448)
..+++|.+..++.+.+.+..+. -.+.+.++|+.|+||+|+|..+++..-......... =..+... -
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~---c 89 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPD---H 89 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCC---C
Confidence 3578999999999999986542 346788999999999999988876321111000000 0000000 0
Q ss_pred HHHHHHHHhc-------cC---CC----CCCCCHHHHHHHHHHHh-----CCccEEEEEecCCCCChhhHhhhcccccCC
Q 048507 261 GLTKTILRSV-------TK---QT----IDDSDLNLLQEELKKKL-----SQKKFLLVLDDVWNENYNDWVRLSRPFEAG 321 (1448)
Q Consensus 261 ~~~~~i~~~l-------~~---~~----~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~ 321 (1448)
...+.+...- .. +. .....++++. .+.+.+ .+++.++|+|+++..+......+...+...
T Consensus 90 ~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep 168 (365)
T PRK07471 90 PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP 168 (365)
T ss_pred hHHHHHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC
Confidence 1111111110 00 00 0112344432 233333 255679999999877766677776666655
Q ss_pred CCCcEEEEEcCch-hhhhcc-CCcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCchHHHHHH
Q 048507 322 APGSKIIVTTRNQ-EVADIM-GTASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGLPLAAQTL 392 (1448)
Q Consensus 322 ~~gs~ilvTtR~~-~v~~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 392 (1448)
..++.+|++|... .+.... .-...+.+.+++.++..+++........ .+....+++.++|.|.....+
T Consensus 169 p~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~---~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 169 PARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP---DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 5566677766654 333222 2246799999999999999987643222 222367899999999866554
No 87
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.11 E-value=5.2e-07 Score=93.07 Aligned_cols=100 Identities=28% Similarity=0.301 Sum_probs=84.7
Q ss_pred ccCceeEEEeCCCCccccCccccCCccceEEeccCccccccChhhhccccccEEeccCCchhhcccccccccCCCCeeee
Q 048507 593 KLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 672 (1448)
Q Consensus 593 ~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~~L~~L~l 672 (1448)
..+.|..|||++|.|+.+-++..-++.+|.|++|+|.|..+-. +..|++|+.|||++| .+..+-..=.+|.|.+.|.|
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEeeeeh
Confidence 5678999999999999999999899999999999999998854 899999999999996 56666666678899999999
Q ss_pred cCCCCccccccccCcccccccccc
Q 048507 673 SNTKSLEEMPVGIGRLTSLQTLCN 696 (1448)
Q Consensus 673 ~~~~~l~~~p~~i~~L~~L~~L~~ 696 (1448)
++|. ++.+ .++++|-+|..|+.
T Consensus 360 a~N~-iE~L-SGL~KLYSLvnLDl 381 (490)
T KOG1259|consen 360 AQNK-IETL-SGLRKLYSLVNLDL 381 (490)
T ss_pred hhhh-Hhhh-hhhHhhhhheeccc
Confidence 9998 6665 36777777777743
No 88
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=1.3e-05 Score=96.46 Aligned_cols=190 Identities=14% Similarity=0.143 Sum_probs=109.2
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.++||.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++........ -+..+... ...+.+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~---~~~pCg~C----~sCr~i~ 83 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQ---HGEPCGVC----QSCTQID 83 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCC---CCCCCccc----HHHHHHh
Confidence 468999999999999986542 24678999999999999999988632111110 00001100 0000000
Q ss_pred Hh-----ccCCCCCCCCHHHHHHHHHHH----hCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCch-hhh
Q 048507 268 RS-----VTKQTIDDSDLNLLQEELKKK----LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQ-EVA 337 (1448)
Q Consensus 268 ~~-----l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~ 337 (1448)
.. +..........+.+.+.+... ..+++-++|+|++..........+...+......+++|++|.+. .+.
T Consensus 84 ~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~ 163 (709)
T PRK08691 84 AGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVP 163 (709)
T ss_pred ccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccc
Confidence 00 000001112233333322211 23566799999997665545555666655444566677666543 222
Q ss_pred hcc-CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchHHH
Q 048507 338 DIM-GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPLAA 389 (1448)
Q Consensus 338 ~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal 389 (1448)
..+ +-...+++++++.++....+.+.+.... ...++....|++.++|.+--+
T Consensus 164 ~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 164 VTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred hHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHH
Confidence 211 2234688899999999888876553322 344667889999999987543
No 89
>PRK09087 hypothetical protein; Validated
Probab=98.10 E-value=4.3e-05 Score=81.78 Aligned_cols=140 Identities=14% Similarity=0.149 Sum_probs=87.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQK 294 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1448)
.+.+.|+|+.|+|||+|++.++.... ..+++.. .+..+++.. +.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~---------------------~~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANA---------------------AAE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHh---------------------hhc-
Confidence 36689999999999999998886321 1233321 111111111 111
Q ss_pred cEEEEEecCCCCC--hhhHhhhcccccCCCCCcEEEEEcCc---------hhhhhccCCcceEeCCCCCHHHHHHHHhhc
Q 048507 295 KFLLVLDDVWNEN--YNDWVRLSRPFEAGAPGSKIIVTTRN---------QEVADIMGTASAYQLKKLSIDDCLAVVAQH 363 (1448)
Q Consensus 295 ~~LlVlDdv~~~~--~~~~~~l~~~l~~~~~gs~ilvTtR~---------~~v~~~~~~~~~~~l~~l~~~~a~~l~~~~ 363 (1448)
-+|++||+.... ...+..+...+. ..|..||+|++. ++....+.....+++++++.++-.+++.+.
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 278889995432 222222222222 246779998873 233344455678999999999999999887
Q ss_pred ccCCc-hhhHHHHHHHHHhcCCchHHHHHH
Q 048507 364 SLGSD-KLLEEIGKKIVAKCDGLPLAAQTL 392 (1448)
Q Consensus 364 ~~~~~-~~~~~~~~~i~~~~~g~PLal~~~ 392 (1448)
+.... ...+++..-|++.+.|..-++..+
T Consensus 166 ~~~~~~~l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 166 FADRQLYVDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHcCCCCCHHHHHHHHHHhhhhHHHHHHH
Confidence 64332 445678888888888877766643
No 90
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.10 E-value=2.7e-05 Score=84.75 Aligned_cols=171 Identities=18% Similarity=0.147 Sum_probs=96.2
Q ss_pred eccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhc
Q 048507 191 YGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSV 270 (1448)
Q Consensus 191 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 270 (1448)
.|+..+.......+... ....+.+.|+|..|+|||+||+.+++... ... ..+.++++..... . +
T Consensus 22 ~~~~~~~~~~l~~~~~~----~~~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~~------~----~ 85 (227)
T PRK08903 22 AGENAELVARLRELAAG----PVADRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPLL------A----F 85 (227)
T ss_pred cCCcHHHHHHHHHHHhc----cCCCCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhHH------H----H
Confidence 46554444433333221 12346788999999999999999987421 112 2345555433110 0 0
Q ss_pred cCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccC-CCCCc-EEEEEcCchhhhh--------cc
Q 048507 271 TKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEA-GAPGS-KIIVTTRNQEVAD--------IM 340 (1448)
Q Consensus 271 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs-~ilvTtR~~~v~~--------~~ 340 (1448)
.. ....-+||+||+.......-..+...+.. ...+. .+|+|++...... .+
T Consensus 86 ------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~ 146 (227)
T PRK08903 86 ------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRL 146 (227)
T ss_pred ------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHH
Confidence 01 12234789999965432222233333322 11333 4666766432211 22
Q ss_pred CCcceEeCCCCCHHHHHHHHhhcccC-CchhhHHHHHHHHHhcCCchHHHHHHHhhh
Q 048507 341 GTASAYQLKKLSIDDCLAVVAQHSLG-SDKLLEEIGKKIVAKCDGLPLAAQTLGGLL 396 (1448)
Q Consensus 341 ~~~~~~~l~~l~~~~a~~l~~~~~~~-~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 396 (1448)
.....+++.+++.++-..++.+.+.. .....+++.+.+++...|.+..+..+...+
T Consensus 147 ~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 147 GWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred hcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 22357899999998877776653321 123456778889999999999887776554
No 91
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.08 E-value=6.9e-05 Score=88.22 Aligned_cols=181 Identities=18% Similarity=0.212 Sum_probs=108.9
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccc--------------------cccce
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQ--------------------DHFDL 247 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~f~~ 247 (1448)
.+++|.+..++.+.+++..+. -.+.+.++|++|+||||+|+.++...... .+++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~- 87 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD- 87 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-
Confidence 357999999999999986532 24678899999999999999887632111 0122
Q ss_pred EEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH-hCCccEEEEEecCCCCChhhHhhhcccccCCCCCcE
Q 048507 248 KAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKK-LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSK 326 (1448)
Q Consensus 248 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 326 (1448)
+++++........ ..+++. +.+... ..+++-++|+|+++.........+...+......+.
T Consensus 88 ~~~~~~~~~~~~~-~~~~l~-----------------~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 88 VIEIDAASNNGVD-DIREIL-----------------DNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred EEEeeccccCCHH-HHHHHH-----------------HHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 1222221111111 111111 111110 124556899999966554556666666654445666
Q ss_pred EEEEcCchh-hhhcc-CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchHHHHHH
Q 048507 327 IIVTTRNQE-VADIM-GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPLAAQTL 392 (1448)
Q Consensus 327 ilvTtR~~~-v~~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal~~~ 392 (1448)
+|++|.+.. +...+ .....+++.+++.++..+++...+.... ...++.+..+++.++|.|-.+...
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHH
Confidence 666665433 22222 2235788999999998888876543222 334577888999999988655444
No 92
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=3.7e-05 Score=91.84 Aligned_cols=195 Identities=16% Similarity=0.197 Sum_probs=110.4
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.+++|++..++.+..++..+. -.+.+.++|+.|+||||+|+.+++...... |.... ........+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHHH
Confidence 467899999999999886532 246788999999999999999986321111 11100 011111111111
Q ss_pred HhccCC-----CCCCCCHHHHHHHHHHH----hCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEc-Cchhhh
Q 048507 268 RSVTKQ-----TIDDSDLNLLQEELKKK----LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTT-RNQEVA 337 (1448)
Q Consensus 268 ~~l~~~-----~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~ 337 (1448)
...... .......+++...+... ..+++-++|+|+++......+..+...+......+.+|++| ....+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 111000 00112223322221111 12344479999997766566667766665544455555544 433333
Q ss_pred hcc-CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchH-HHHHHHh
Q 048507 338 DIM-GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPL-AAQTLGG 394 (1448)
Q Consensus 338 ~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PL-al~~~~~ 394 (1448)
..+ .....+++.+++.++....+...+.... ....+.+..+++.++|.+- |+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 222 2345799999999999888876542221 2345677889999999664 4444443
No 93
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=3.4e-05 Score=93.74 Aligned_cols=192 Identities=15% Similarity=0.150 Sum_probs=112.2
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.++||.+.-++.+...+..+. -.+.+.++|..|+||||+|+.+++.......+.. .....-...+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~-------~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA-------TPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC-------CCCCCCHHHHHHH
Confidence 468999999999999886532 2355789999999999999999874321111000 0000111122221
Q ss_pred HhccC-----CCCCCCCHHHHHHHHHH---H-hCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCc-hhhh
Q 048507 268 RSVTK-----QTIDDSDLNLLQEELKK---K-LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRN-QEVA 337 (1448)
Q Consensus 268 ~~l~~-----~~~~~~~~~~~~~~l~~---~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~ 337 (1448)
..-.. ........+++.+.+.. . ..+++-++|+|+++.........+...+.......++|.+|.+ ..+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 10000 00001123332222211 1 2356679999999877766777777666655556666665554 3333
Q ss_pred hcc-CCcceEeCCCCCHHHHHHHHhhcccC-CchhhHHHHHHHHHhcCCchHHHHH
Q 048507 338 DIM-GTASAYQLKKLSIDDCLAVVAQHSLG-SDKLLEEIGKKIVAKCDGLPLAAQT 391 (1448)
Q Consensus 338 ~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~-~~~~~~~~~~~i~~~~~g~PLal~~ 391 (1448)
..+ .-...|.+++++.++..+.+.+.... .....++....|++.++|.+-.+..
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 222 22367999999999999888765421 1233456678899999997764433
No 94
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.07 E-value=1.6e-05 Score=98.81 Aligned_cols=166 Identities=25% Similarity=0.302 Sum_probs=95.6
Q ss_pred CeEeccchhHH---HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHH
Q 048507 188 AQVYGRETEKK---DVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTK 264 (1448)
Q Consensus 188 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 264 (1448)
++|+|++..+. .+..++... ....+.++|++|+||||+|+.+++. ....|. .+++.. ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~------~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i~---- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD------RVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGVK---- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhhH----
Confidence 45789887774 455555332 4456789999999999999999973 333331 111110 0000
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHh--CCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEE--EcCchh--hhh
Q 048507 265 TILRSVTKQTIDDSDLNLLQEELKKKL--SQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIV--TTRNQE--VAD 338 (1448)
Q Consensus 265 ~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~--v~~ 338 (1448)
+..+......+.+ .+++.++|+||++.-....++.+...+. .|..++| ||.+.. +..
T Consensus 92 --------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 92 --------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred --------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 1111111121111 2457799999997665555555554332 3555555 344431 111
Q ss_pred cc-CCcceEeCCCCCHHHHHHHHhhccc------CC--chhhHHHHHHHHHhcCCch
Q 048507 339 IM-GTASAYQLKKLSIDDCLAVVAQHSL------GS--DKLLEEIGKKIVAKCDGLP 386 (1448)
Q Consensus 339 ~~-~~~~~~~l~~l~~~~a~~l~~~~~~------~~--~~~~~~~~~~i~~~~~g~P 386 (1448)
.+ .-...+.+++++.++...++.+... +. ....++....|++.+.|.-
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 11 1235799999999999998876543 11 1334567788888888864
No 95
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=6.2e-05 Score=87.11 Aligned_cols=193 Identities=13% Similarity=0.123 Sum_probs=108.8
Q ss_pred CeEeccchhHHHHHHHHhcCCCC----CCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLS----NDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLT 263 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 263 (1448)
.+++|.+..++.+..++...... ...-.+.+.++|+.|+|||++|+.++........- +..+... ..-
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~----~~~Cg~C----~~C 76 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD----EPGCGEC----RAC 76 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC----CCCCCCC----HHH
Confidence 35789999999999999764210 00135678899999999999999987632111000 0000000 000
Q ss_pred HHHHHhccCC------CCCCCCHHHHHHHHHHH----hCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCc
Q 048507 264 KTILRSVTKQ------TIDDSDLNLLQEELKKK----LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRN 333 (1448)
Q Consensus 264 ~~i~~~l~~~------~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 333 (1448)
+.+...-..+ .......+++.+.+... ..+++-++|+|+++.........+...+.....++.+|++|.+
T Consensus 77 ~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECC
Confidence 1111000000 00112233322222111 1245558888999776655555666666555556666666655
Q ss_pred h-hhhhcc-CCcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCchHHHHHH
Q 048507 334 Q-EVADIM-GTASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGLPLAAQTL 392 (1448)
Q Consensus 334 ~-~v~~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 392 (1448)
. .+...+ .-...+.+.+++.++..+.+.... + ...+.+..+++.++|.|.....+
T Consensus 157 ~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~---~~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 157 PEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G---VDPETARRAARASQGHIGRARRL 213 (394)
T ss_pred hHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 3 443332 223689999999999998887432 1 12456788999999999755444
No 96
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=4.5e-05 Score=89.87 Aligned_cols=175 Identities=17% Similarity=0.194 Sum_probs=110.3
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccc-------------------cccceE
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQ-------------------DHFDLK 248 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~~ 248 (1448)
.++||.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++..... +.+.-+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 468999999998888885432 23578899999999999999987521100 111112
Q ss_pred EEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH----hCCccEEEEEecCCCCChhhHhhhcccccCCCCC
Q 048507 249 AWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKK----LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPG 324 (1448)
Q Consensus 249 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 324 (1448)
+.++.+... ..+++.+.+... ..+++-++|+|+++.........+...+....+.
T Consensus 88 ~eidaas~~---------------------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~ 146 (491)
T PRK14964 88 IEIDAASNT---------------------SVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPH 146 (491)
T ss_pred EEEecccCC---------------------CHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCC
Confidence 233322221 222222222111 1345668999999776666677777777665566
Q ss_pred cEEEEEc-Cchhhhhcc-CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchHH
Q 048507 325 SKIIVTT-RNQEVADIM-GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPLA 388 (1448)
Q Consensus 325 s~ilvTt-R~~~v~~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PLa 388 (1448)
+++|++| ....+...+ .-...+++++++.++..+.+.+.+.... ...++....|++.++|.+-.
T Consensus 147 v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 147 VKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRN 213 (491)
T ss_pred eEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 7666655 434443322 2346789999999999888877653322 34566778899999997753
No 97
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.05 E-value=3.5e-05 Score=83.52 Aligned_cols=152 Identities=14% Similarity=0.133 Sum_probs=90.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQK 294 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1448)
.+.+.|+|+.|+|||+||+.+++... ..-..+.++++..... ...++.+.+ ..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~v~y~~~~~~~~--------------------~~~~~~~~~----~~- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELS--QRGRAVGYVPLDKRAW--------------------FVPEVLEGM----EQ- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEEHHHHhh--------------------hhHHHHHHh----hh-
Confidence 35789999999999999999887422 2223456666532100 001111111 11
Q ss_pred cEEEEEecCCCCC-hhhHhhh-cccccC-CCCC-cEEEEEcCch---------hhhhccCCcceEeCCCCCHHHHHHHHh
Q 048507 295 KFLLVLDDVWNEN-YNDWVRL-SRPFEA-GAPG-SKIIVTTRNQ---------EVADIMGTASAYQLKKLSIDDCLAVVA 361 (1448)
Q Consensus 295 ~~LlVlDdv~~~~-~~~~~~l-~~~l~~-~~~g-s~ilvTtR~~---------~v~~~~~~~~~~~l~~l~~~~a~~l~~ 361 (1448)
--+|++||+.... ...|+.. ...+.. ...| .++|+||+.. +....+....++++++++.++-.+++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 2378999996532 1234332 122211 1123 4799999854 223334555789999999999999887
Q ss_pred hcccCC-chhhHHHHHHHHHhcCCchHHHHHHH
Q 048507 362 QHSLGS-DKLLEEIGKKIVAKCDGLPLAAQTLG 393 (1448)
Q Consensus 362 ~~~~~~-~~~~~~~~~~i~~~~~g~PLal~~~~ 393 (1448)
+++... -...+++..-|++.+.|..-++..+-
T Consensus 178 ~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 178 LRARLRGFELPEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred HHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHH
Confidence 755332 24556788888888888665554443
No 98
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=6.1e-05 Score=91.46 Aligned_cols=193 Identities=14% Similarity=0.153 Sum_probs=111.1
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccc--ceEEEEEeCCccCHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHF--DLKAWTCVSDDFDVKGLTKT 265 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~ 265 (1448)
.++||-+.-++.+..++..+. -.+.+.++|+.|+||||+|+.+++........ ....+-.+ ..-...+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC----g~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC----GVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC----CccHHHHH
Confidence 457899998899999886542 34677899999999999999987532111100 00000001 11111111
Q ss_pred HHHhc-----cCCCCCCCCHHHHHHHHHHH----hCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEc-Cchh
Q 048507 266 ILRSV-----TKQTIDDSDLNLLQEELKKK----LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTT-RNQE 335 (1448)
Q Consensus 266 i~~~l-----~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~ 335 (1448)
|...- ..........+++.+.+... ..++.-++|+|+++......+..+...+......+++|++| ....
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 11100 00000112333333333221 12445589999998877777777777766655566666555 4333
Q ss_pred hhhcc-CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchHHH
Q 048507 336 VADIM-GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPLAA 389 (1448)
Q Consensus 336 v~~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal 389 (1448)
+.... .-...+++++++.++..+.+.+.+.... ...++....|++.++|.+-.+
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDA 222 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 33222 2346799999999999888876543222 334567788999999877544
No 99
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.04 E-value=2.3e-05 Score=91.59 Aligned_cols=181 Identities=14% Similarity=0.160 Sum_probs=99.8
Q ss_pred ccCeEeccchhHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccC
Q 048507 186 TEAQVYGRETEKKDVVELLLRDDLS-------NDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFD 258 (1448)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 258 (1448)
...++.|++.+++++.+.+...-.. +-...+-+.++|++|+|||++|+++++. ....| +.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~--- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG--- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch---
Confidence 3457899999999999887432110 1123456889999999999999999983 33333 22211
Q ss_pred HHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCC-----------hh---hHhhhcccccC--CC
Q 048507 259 VKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNEN-----------YN---DWVRLSRPFEA--GA 322 (1448)
Q Consensus 259 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------~~---~~~~l~~~l~~--~~ 322 (1448)
..+.... ++ .....+...+...-...+.+|++|+++... .. .+..+...+.. ..
T Consensus 190 -~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 -SELVRKY---IG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred -HHHHHHh---hh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 1111110 00 011112222222223467899999985421 01 12222222211 12
Q ss_pred CCcEEEEEcCchhhhh-cc----CCcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCch
Q 048507 323 PGSKIIVTTRNQEVAD-IM----GTASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGLP 386 (1448)
Q Consensus 323 ~gs~ilvTtR~~~v~~-~~----~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~P 386 (1448)
.+.+||.||....... .+ .....+++...+.++..++|..++.............+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCC
Confidence 4677888887543221 11 2235688999999999999988764433111112456777777653
No 100
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=4.3e-05 Score=90.02 Aligned_cols=199 Identities=13% Similarity=0.160 Sum_probs=113.0
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEE-eCCccCHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTC-VSDDFDVKGLTKTI 266 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 266 (1448)
.+++|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++.......+....|.. .......-...+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 468899999999988885432 235688999999999999999886432211111111110 00000111111111
Q ss_pred HHhccC-----CCCCCCCHHHHHHHHHHHh-----CCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEc-Cchh
Q 048507 267 LRSVTK-----QTIDDSDLNLLQEELKKKL-----SQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTT-RNQE 335 (1448)
Q Consensus 267 ~~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~ 335 (1448)
...... ........+++.+. .+.+ .+++-++|+|+++......+..+...+....+.+.+|++| +...
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l-~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLL-RENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHH-HHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 111000 00011223444332 2222 2456689999997766566777777766655566665554 4444
Q ss_pred hhhccC-CcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchH-HHHHH
Q 048507 336 VADIMG-TASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPL-AAQTL 392 (1448)
Q Consensus 336 v~~~~~-~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PL-al~~~ 392 (1448)
+...+. ....+++.+++.++..+.+...+.... ...++.+..|++.++|.+- |+..+
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L 229 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSIL 229 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 433221 235789999999998887776543222 3456788899999999775 44433
No 101
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=5.5e-05 Score=90.94 Aligned_cols=176 Identities=14% Similarity=0.121 Sum_probs=107.4
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccc-------------------cceE
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDH-------------------FDLK 248 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 248 (1448)
.++||-+..++.+..++.... -.+.+.++|+.|+||||+|+.+++..-.... |.-+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 458999999999999996542 2456789999999999999998863221111 1112
Q ss_pred EEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH----hCCccEEEEEecCCCCChhhHhhhcccccCCCCC
Q 048507 249 AWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKK----LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPG 324 (1448)
Q Consensus 249 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 324 (1448)
+.++... ....+++.+.+... ..++.-++|+|+++.........+...+......
T Consensus 91 ~eidaas---------------------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~ 149 (509)
T PRK14958 91 FEVDAAS---------------------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSH 149 (509)
T ss_pred EEEcccc---------------------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCC
Confidence 2222211 12233322222111 1345668999999877666677777666655556
Q ss_pred cEEEEEcCc-hhhhhcc-CCcceEeCCCCCHHHHHHHHhhcccCC-chhhHHHHHHHHHhcCCchHHH
Q 048507 325 SKIIVTTRN-QEVADIM-GTASAYQLKKLSIDDCLAVVAQHSLGS-DKLLEEIGKKIVAKCDGLPLAA 389 (1448)
Q Consensus 325 s~ilvTtR~-~~v~~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~-~~~~~~~~~~i~~~~~g~PLal 389 (1448)
+++|++|.+ ..+...+ .-...+++++++.++....+...+... ....++....|++.++|.+-.+
T Consensus 150 ~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 150 VKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDA 217 (509)
T ss_pred eEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHH
Confidence 776665543 3333222 223568899999998777655443221 1234556778999999977543
No 102
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.02 E-value=1.1e-05 Score=87.05 Aligned_cols=90 Identities=21% Similarity=0.220 Sum_probs=62.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCc--cCHHHHHHHHHHhccCCCCCCCCHH------HHHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDD--FDVKGLTKTILRSVTKQTIDDSDLN------LLQE 285 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 285 (1448)
....++|+|++|+|||||++.++++.... +|+.++|+.+.+. .++.++++.+...+-....+..... .+.+
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 34678999999999999999999865444 8999999997776 7899999998444333222221111 1122
Q ss_pred HHHHH-hCCccEEEEEecCC
Q 048507 286 ELKKK-LSQKKFLLVLDDVW 304 (1448)
Q Consensus 286 ~l~~~-l~~~~~LlVlDdv~ 304 (1448)
..... -.++++++++|++.
T Consensus 94 ~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHCCCCEEEEEECHH
Confidence 22222 24789999999994
No 103
>PRK05642 DNA replication initiation factor; Validated
Probab=98.00 E-value=5.1e-05 Score=82.13 Aligned_cols=153 Identities=22% Similarity=0.250 Sum_probs=90.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQK 294 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1448)
...+.|+|..|+|||.||+++++.. ...-..++|++... +... .. .+.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~--~~~~~~v~y~~~~~------~~~~--------------~~----~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF--EQRGEPAVYLPLAE------LLDR--------------GP----ELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEeeHHH------HHhh--------------hH----HHHHhhhhC
Confidence 3678999999999999999998732 22223567776432 1110 01 122223222
Q ss_pred cEEEEEecCCCCC-hhhHhh-hcccccC-CCCCcEEEEEcCchhh---------hhccCCcceEeCCCCCHHHHHHHHhh
Q 048507 295 KFLLVLDDVWNEN-YNDWVR-LSRPFEA-GAPGSKIIVTTRNQEV---------ADIMGTASAYQLKKLSIDDCLAVVAQ 362 (1448)
Q Consensus 295 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~ilvTtR~~~v---------~~~~~~~~~~~l~~l~~~~a~~l~~~ 362 (1448)
. ++|+||+.... ...|.. +...+.. ...|.+||+|++.... ...+.....+++++++.++-.+++..
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 2 67899996431 123433 3222221 2246678998875321 12223346789999999999999885
Q ss_pred cccCC-chhhHHHHHHHHHhcCCchHHHHHHHh
Q 048507 363 HSLGS-DKLLEEIGKKIVAKCDGLPLAAQTLGG 394 (1448)
Q Consensus 363 ~~~~~-~~~~~~~~~~i~~~~~g~PLal~~~~~ 394 (1448)
++... -...+++..-|++.+.|..-++..+-.
T Consensus 178 ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 178 RASRRGLHLTDEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 54332 234467788888888887655544433
No 104
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.97 E-value=1.6e-05 Score=88.60 Aligned_cols=90 Identities=20% Similarity=0.214 Sum_probs=61.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCcc--CHHHHHHHHHHhccCCCCCCCCHHHH------HH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDF--DVKGLTKTILRSVTKQTIDDSDLNLL------QE 285 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~------~~ 285 (1448)
.....+|+|++|+||||||+++|++.... +|+.++||.+.+.. .+.++++.+...+-....+.....+. .+
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 34567899999999999999999865443 89999999998887 77788888764333222222221111 11
Q ss_pred HHHHH-hCCccEEEEEecCC
Q 048507 286 ELKKK-LSQKKFLLVLDDVW 304 (1448)
Q Consensus 286 ~l~~~-l~~~~~LlVlDdv~ 304 (1448)
.-... -.+++++|++|++.
T Consensus 247 ~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHcCCCEEEEEEChH
Confidence 11111 35789999999994
No 105
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.97 E-value=6.3e-05 Score=80.26 Aligned_cols=185 Identities=16% Similarity=0.190 Sum_probs=102.3
Q ss_pred Eeccc-hhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHH
Q 048507 190 VYGRE-TEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILR 268 (1448)
Q Consensus 190 ~vGr~-~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 268 (1448)
++|.. +..-.....+.+.. +.....+.|+|..|+|||.|.+++++.......=..+++++ ..+....+..
T Consensus 11 v~g~~N~~a~~~~~~ia~~~---~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~ 81 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENP---GERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFAD 81 (219)
T ss_dssp --TTTTHHHHHHHHHHHHST---TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcC---CCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHH
Confidence 45753 34445555565542 22445678999999999999999998432221222466664 3455555555
Q ss_pred hccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChh-hHhh-hcccccC-CCCCcEEEEEcCchh---------h
Q 048507 269 SVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYN-DWVR-LSRPFEA-GAPGSKIIVTTRNQE---------V 336 (1448)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~-~~~~-l~~~l~~-~~~gs~ilvTtR~~~---------v 336 (1448)
.+.. ...+ .+++.++ .-=+|++||++..... .|.. +...+.. ...|.+||+|++... .
T Consensus 82 ~~~~-----~~~~----~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L 151 (219)
T PF00308_consen 82 ALRD-----GEIE----EFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDL 151 (219)
T ss_dssp HHHT-----TSHH----HHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHH
T ss_pred HHHc-----ccch----hhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhh
Confidence 5543 2222 2333344 2348899999654322 2322 2111111 124668999996431 2
Q ss_pred hhccCCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchHHHHHHH
Q 048507 337 ADIMGTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPLAAQTLG 393 (1448)
Q Consensus 337 ~~~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal~~~~ 393 (1448)
...+...-.+++++.+.++-.+++.+.+.... ...+++++-|++.+.+..-.+..+-
T Consensus 152 ~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 152 RSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp HHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred hhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHH
Confidence 22334456899999999999999988764333 4456677778888777665554443
No 106
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.96 E-value=6.4e-06 Score=61.37 Aligned_cols=40 Identities=28% Similarity=0.483 Sum_probs=26.6
Q ss_pred CceeEEEeCCCCccccCccccCCccceEEeccCccccccC
Q 048507 595 QRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLP 634 (1448)
Q Consensus 595 ~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp 634 (1448)
++|++|++++|+|+.+|..|++|++|++|++++|+|+.+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3567777777777777666777777777777777776554
No 107
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=9.3e-05 Score=90.22 Aligned_cols=195 Identities=14% Similarity=0.179 Sum_probs=114.1
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccc--eEEEEEeCCccCHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFD--LKAWTCVSDDFDVKGLTKT 265 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~ 265 (1448)
.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+++......... ...+-.+.. -...+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~----c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV----GEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc----cHHHHH
Confidence 468999999999999996542 345788999999999999999987432111110 000000110 111122
Q ss_pred HHHhccCC-----CCCCCCHHHHHHHHHHH----hCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEc-Cchh
Q 048507 266 ILRSVTKQ-----TIDDSDLNLLQEELKKK----LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTT-RNQE 335 (1448)
Q Consensus 266 i~~~l~~~-----~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~ 335 (1448)
|......+ .......+++.+.+... ..+++-++|+|+++.........+...+......+.+|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 22111110 00122333333222111 12455689999997766556667776666555566665544 4444
Q ss_pred hhhcc-CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchHHHHH
Q 048507 336 VADIM-GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPLAAQT 391 (1448)
Q Consensus 336 v~~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal~~ 391 (1448)
+...+ .....+++..++.++....+.+.+.... ....+....|++.++|.+.-+..
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 43322 2235799999999999888877543222 33457788899999998865543
No 108
>PF14516 AAA_35: AAA-like domain
Probab=97.93 E-value=0.00098 Score=76.36 Aligned_cols=200 Identities=13% Similarity=0.110 Sum_probs=118.6
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCc-----cCHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDD-----FDVKGL 262 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~~ 262 (1448)
+..|.|...-+++.+.+... ...+.|.|+-.+|||+|...+.+..+. ..| .++++++... .+....
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLEQF 81 (331)
T ss_pred CcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHHHH
Confidence 34568886777777777553 258999999999999999998874332 234 3557776542 245555
Q ss_pred HHHHHHhc----cCCCC-------CCCCHHHHHHHHHHHh---CCccEEEEEecCCCCCh-----hhHhhhcccccCCC-
Q 048507 263 TKTILRSV----TKQTI-------DDSDLNLLQEELKKKL---SQKKFLLVLDDVWNENY-----NDWVRLSRPFEAGA- 322 (1448)
Q Consensus 263 ~~~i~~~l----~~~~~-------~~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~-----~~~~~l~~~l~~~~- 322 (1448)
++.++..+ ..... ...........+.+.+ .+++.+|++|+++..-. .++-.+.+.+-...
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 55555444 32211 0112223334444432 26899999999964311 12222222221110
Q ss_pred ----CCcEEEEEcCchhh--hh-----ccCCcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCchHHHHH
Q 048507 323 ----PGSKIIVTTRNQEV--AD-----IMGTASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGLPLAAQT 391 (1448)
Q Consensus 323 ----~gs~ilvTtR~~~v--~~-----~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 391 (1448)
-..-.+|.....+. .. .+.....++|++++.+|...|..++...-. .+..++|...+||+|.-+..
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~---~~~~~~l~~~tgGhP~Lv~~ 238 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS---QEQLEQLMDWTGGHPYLVQK 238 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC---HHHHHHHHHHHCCCHHHHHH
Confidence 01112222221111 11 112235789999999999999988743322 33388999999999999999
Q ss_pred HHhhhccC
Q 048507 392 LGGLLRGK 399 (1448)
Q Consensus 392 ~~~~l~~~ 399 (1448)
++..+...
T Consensus 239 ~~~~l~~~ 246 (331)
T PF14516_consen 239 ACYLLVEE 246 (331)
T ss_pred HHHHHHHc
Confidence 99998664
No 109
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.93 E-value=0.00011 Score=87.29 Aligned_cols=166 Identities=14% Similarity=0.132 Sum_probs=100.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQK 294 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1448)
...+.|+|..|+|||+|++++++.......-..+++++. .++...+...+.... ...+.+++.++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~-------~~~~~~~~~~~~- 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKTH-------KEIEQFKNEICQ- 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHhh-------hHHHHHHHHhcc-
Confidence 356889999999999999999873221111223455543 455666665554210 112233333332
Q ss_pred cEEEEEecCCCCCh-hhH-hhhcccccC-CCCCcEEEEEcCch---------hhhhccCCcceEeCCCCCHHHHHHHHhh
Q 048507 295 KFLLVLDDVWNENY-NDW-VRLSRPFEA-GAPGSKIIVTTRNQ---------EVADIMGTASAYQLKKLSIDDCLAVVAQ 362 (1448)
Q Consensus 295 ~~LlVlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~l~~~~a~~l~~~ 362 (1448)
.-+||+||+..... ..+ +.+...+.. ...|..||+|+... ++...+...-.+++++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 44888999965431 112 222222211 12345788887532 2223344456788999999999999988
Q ss_pred cccCCc---hhhHHHHHHHHHhcCCchHHHHHHHh
Q 048507 363 HSLGSD---KLLEEIGKKIVAKCDGLPLAAQTLGG 394 (1448)
Q Consensus 363 ~~~~~~---~~~~~~~~~i~~~~~g~PLal~~~~~ 394 (1448)
++.... ...+++..-|++.++|.|-.+..+..
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 764321 34577889999999999987765543
No 110
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00011 Score=89.15 Aligned_cols=180 Identities=14% Similarity=0.168 Sum_probs=108.5
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc-------------------ccceE
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQD-------------------HFDLK 248 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~ 248 (1448)
.+++|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++...... .|.-.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 357899999999999986542 235678999999999999999976321111 01111
Q ss_pred EEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH----hCCccEEEEEecCCCCChhhHhhhcccccCCCCC
Q 048507 249 AWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKK----LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPG 324 (1448)
Q Consensus 249 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 324 (1448)
+++.... ....+++.+.+... ..+++-++|+|+++.........+...+......
T Consensus 91 ~ei~~~~---------------------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~ 149 (527)
T PRK14969 91 IEVDAAS---------------------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (527)
T ss_pred eEeeccc---------------------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence 2221111 12223322222111 1355679999999776655666666666554456
Q ss_pred cEEEEEcCc-hhhhhcc-CCcceEeCCCCCHHHHHHHHhhcccCC-chhhHHHHHHHHHhcCCchH-HHHHHH
Q 048507 325 SKIIVTTRN-QEVADIM-GTASAYQLKKLSIDDCLAVVAQHSLGS-DKLLEEIGKKIVAKCDGLPL-AAQTLG 393 (1448)
Q Consensus 325 s~ilvTtR~-~~v~~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~-~~~~~~~~~~i~~~~~g~PL-al~~~~ 393 (1448)
+.+|++|.+ ..+...+ .-...+++++++.++....+.+.+... ....++....|++.++|.+- |+..+-
T Consensus 150 ~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lld 222 (527)
T PRK14969 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLD 222 (527)
T ss_pred EEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 666655543 3332211 113578999999999888776643211 13345667889999999774 444443
No 111
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.92 E-value=0.00018 Score=80.44 Aligned_cols=208 Identities=19% Similarity=0.161 Sum_probs=125.3
Q ss_pred ccCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHH
Q 048507 186 TEAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKT 265 (1448)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 265 (1448)
.+..++||+.|+..+.+++...- .....+-+-|.|.+|.|||.+...++.+......=..++++++..-.....++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hl--e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHL--ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhh--hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 45678999999999999997654 3345677899999999999999999986433222235688888876778888888
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHHhCC-c-cEEEEEecCCCCChhhHhhhcccccC-CCCCcEEEEEcCc------hhh
Q 048507 266 ILRSVTKQTIDDSDLNLLQEELKKKLSQ-K-KFLLVLDDVWNENYNDWVRLSRPFEA-GAPGSKIIVTTRN------QEV 336 (1448)
Q Consensus 266 i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~-~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~------~~v 336 (1448)
|...+...........+..+.+.+..+. + .+++|+|..+.-....-..+...|.| .-+++|+|+.--- +..
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 8888733222222224455556555543 3 68999999854211111122222222 2245665543211 011
Q ss_pred hhcc-----CCcceEeCCCCCHHHHHHHHhhcccCCc--h----hhHHHHHHHHHhcCCchHHHHHHHhh
Q 048507 337 ADIM-----GTASAYQLKKLSIDDCLAVVAQHSLGSD--K----LLEEIGKKIVAKCDGLPLAAQTLGGL 395 (1448)
Q Consensus 337 ~~~~-----~~~~~~~l~~l~~~~a~~l~~~~~~~~~--~----~~~~~~~~i~~~~~g~PLal~~~~~~ 395 (1448)
...+ .....+..+|-+.++-.+++..+..... . ..+-.|++++...|.+--|+.+.-++
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~a 375 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRA 375 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 1111 1235678899999999999988754332 1 22233444444444455555544433
No 112
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00015 Score=88.50 Aligned_cols=200 Identities=14% Similarity=0.165 Sum_probs=112.4
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEE-eCCccCHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTC-VSDDFDVKGLTKTI 266 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 266 (1448)
.+++|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++........+...|.. +......-...+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 468899999999999885432 245688999999999999999886432211111011110 00000111111111
Q ss_pred HHhccC-----CCCCCCCHHHHHHHHHHH----hCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEE-EcCchhh
Q 048507 267 LRSVTK-----QTIDDSDLNLLQEELKKK----LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIV-TTRNQEV 336 (1448)
Q Consensus 267 ~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v 336 (1448)
...-.. ........+++.+.+... ..+++-++|+|+++.........+...+......+.+|+ |++...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 110000 000112234444332222 234566899999977665566677766665545555554 4444444
Q ss_pred hhcc-CCcceEeCCCCCHHHHHHHHhhcccCC-chhhHHHHHHHHHhcCCchH-HHHHH
Q 048507 337 ADIM-GTASAYQLKKLSIDDCLAVVAQHSLGS-DKLLEEIGKKIVAKCDGLPL-AAQTL 392 (1448)
Q Consensus 337 ~~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~-~~~~~~~~~~i~~~~~g~PL-al~~~ 392 (1448)
...+ .....+++.+++.++....+.+.+... .....+.++.|++.++|..- |+..+
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 3322 334689999999999887776644321 23456778889999999554 44433
No 113
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=0.00023 Score=87.14 Aligned_cols=192 Identities=14% Similarity=0.153 Sum_probs=108.7
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.+++|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.++...-.....+ .+-.+.. .....
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~--~~~pC~~-------C~~~~ 83 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD--LLEPCQE-------CIENV 83 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCC--CCCchhH-------HHHhh
Confidence 357899999999999996542 346778999999999999999986321111000 0000000 00000
Q ss_pred H-h---ccCCCCCCCCHHH---HHHHHHHH-hCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEE-EEcCchhhhh
Q 048507 268 R-S---VTKQTIDDSDLNL---LQEELKKK-LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKII-VTTRNQEVAD 338 (1448)
Q Consensus 268 ~-~---l~~~~~~~~~~~~---~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il-vTtR~~~v~~ 338 (1448)
. . +..........++ +.+.+... ..+++-++|+|+++......+..+...+......+.+| +|++...+..
T Consensus 84 ~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 84 NNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred cCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence 0 0 0000000112222 22222211 13566699999997766666777766665544455544 4555444433
Q ss_pred cc-CCcceEeCCCCCHHHHHHHHhhcccCC-chhhHHHHHHHHHhcCCchH-HHHHHH
Q 048507 339 IM-GTASAYQLKKLSIDDCLAVVAQHSLGS-DKLLEEIGKKIVAKCDGLPL-AAQTLG 393 (1448)
Q Consensus 339 ~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~-~~~~~~~~~~i~~~~~g~PL-al~~~~ 393 (1448)
.. .....+++.+++.++....+...+... -....+.+..|++.++|.+- |+..+.
T Consensus 164 TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22 223689999999999988877643221 12335667889999998664 444443
No 114
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00017 Score=86.97 Aligned_cols=196 Identities=14% Similarity=0.164 Sum_probs=113.5
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++.......... .....-...+.+.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHh
Confidence 357898888888888885431 2467889999999999999999874321111000 0001111111111
Q ss_pred HhccCC-----CCCCCCHHHHHHHHHHH-----hCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCc-hhh
Q 048507 268 RSVTKQ-----TIDDSDLNLLQEELKKK-----LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRN-QEV 336 (1448)
Q Consensus 268 ~~l~~~-----~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v 336 (1448)
...... ......++++.. +.+. ..+++-+||+|+++......+..+...+........+|++|.. ..+
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kl 162 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKF 162 (624)
T ss_pred cCCCCceEEEecccccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhh
Confidence 110000 000112222221 2221 2355679999999776666667777666544445556565544 444
Q ss_pred hhcc-CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCch-HHHHHHHhhh
Q 048507 337 ADIM-GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLP-LAAQTLGGLL 396 (1448)
Q Consensus 337 ~~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~P-Lal~~~~~~l 396 (1448)
...+ .-...+++++++.++....+...+.... ...++.+..|++.++|.+ -|+..+...+
T Consensus 163 l~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 163 PVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3222 2235789999999999888876543222 345677888999999954 6777766544
No 115
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.85 E-value=8e-05 Score=85.38 Aligned_cols=110 Identities=13% Similarity=0.162 Sum_probs=73.6
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.++++.+..++.+...|... +.+.++|++|+|||++|+.+++.......|+.+.||.+.+..+..+.....
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~- 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY- 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc-
Confidence 45788899999999999653 467889999999999999999855445577889999999887766654322
Q ss_pred HhccCCCCCCC-CHHHHHHHHHHHh--CCccEEEEEecCCCCChh
Q 048507 268 RSVTKQTIDDS-DLNLLQEELKKKL--SQKKFLLVLDDVWNENYN 309 (1448)
Q Consensus 268 ~~l~~~~~~~~-~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~~~ 309 (1448)
........ ......+.+.+.. .++++++|+|++...+..
T Consensus 246 ---rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~ 287 (459)
T PRK11331 246 ---RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLS 287 (459)
T ss_pred ---CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHH
Confidence 11111100 0011222223222 246899999999776543
No 116
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.84 E-value=6.7e-05 Score=79.14 Aligned_cols=189 Identities=17% Similarity=0.186 Sum_probs=116.4
Q ss_pred cCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEE-EEeCCccCHHHHHHH
Q 048507 187 EAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAW-TCVSDDFDVKGLTKT 265 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w-v~~~~~~~~~~~~~~ 265 (1448)
-.+++|.+..++-+...+... .......+|++|.|||+-|.++++..--...|.+++- .+++...... +.+.
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~ 107 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRR------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE 107 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhc------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh
Confidence 356899999999999999653 4678899999999999999998875433445544332 2333322111 0000
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHHh--CCcc-EEEEEecCCCCChhhHhhhcccccCCCCCcEE-EEEcCchhhhhcc-
Q 048507 266 ILRSVTKQTIDDSDLNLLQEELKKKL--SQKK-FLLVLDDVWNENYNDWVRLSRPFEAGAPGSKI-IVTTRNQEVADIM- 340 (1448)
Q Consensus 266 i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i-lvTtR~~~v~~~~- 340 (1448)
...+...+.....+.. ..++ -.||||+++....+.|..+.+.+......++. +||+--..+-..+
T Consensus 108 ----------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 108 ----------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred ----------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 0001111110000000 1223 48899999888888999998888776666664 4555443332222
Q ss_pred CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCc-hHHHHHH
Q 048507 341 GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGL-PLAAQTL 392 (1448)
Q Consensus 341 ~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~-PLal~~~ 392 (1448)
.-...|..++|..++...-+...+-... ....++.+.|++.++|- --|+.++
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 1235689999999998887777654333 45567788899999884 3344333
No 117
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00028 Score=85.61 Aligned_cols=197 Identities=14% Similarity=0.109 Sum_probs=113.7
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.+++|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++........+ +..+... ...+.+.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C----~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVC----ESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCccccc----HHHHHhh
Confidence 468999999999999986532 345678999999999999999986422111100 0011110 1111111
Q ss_pred Hh-------ccCCCCCCCCHHHHH---HHHHHH-hCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEc-Cchh
Q 048507 268 RS-------VTKQTIDDSDLNLLQ---EELKKK-LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTT-RNQE 335 (1448)
Q Consensus 268 ~~-------l~~~~~~~~~~~~~~---~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~ 335 (1448)
.. +.........++++. +.+... ..+++-++|+|+++.........+...+......+.+|++| ....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 00 000000111233322 222111 13456689999998777677777777776655566655544 4444
Q ss_pred hhhcc-CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCch-HHHHHHHhhh
Q 048507 336 VADIM-GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLP-LAAQTLGGLL 396 (1448)
Q Consensus 336 v~~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~P-Lal~~~~~~l 396 (1448)
+...+ .-...+++.+++.++..+.+.+.+.... ...++....|++.++|.+ -|+..+-..+
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 43322 2246799999999998888776443222 334567788899999977 4555554443
No 118
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00031 Score=86.98 Aligned_cols=193 Identities=14% Similarity=0.197 Sum_probs=111.7
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.+++|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++......... ...........+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 468999999999988886432 245678999999999999999986321111000 000011112223332
Q ss_pred HhccCC-----CCCCCCHHHHHHHHHHHh-----CCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCc-hhh
Q 048507 268 RSVTKQ-----TIDDSDLNLLQEELKKKL-----SQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRN-QEV 336 (1448)
Q Consensus 268 ~~l~~~-----~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v 336 (1448)
...... .......+++.+.+ +.+ .+++-++|+|+++.......+.+...+......+.+|+++.+ ..+
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii-~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREII-ERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKV 163 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHH-HHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhh
Confidence 221110 00112233332222 221 245668999999766555566666666554456666665543 333
Q ss_pred hhcc-CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchHHHHHH
Q 048507 337 ADIM-GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPLAAQTL 392 (1448)
Q Consensus 337 ~~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal~~~ 392 (1448)
...+ .....+++..++.++....+.+.+.... ....+.+..|++.++|.+-.+...
T Consensus 164 l~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 164 PATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred hHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3222 2235788999999998887776543322 334577889999999988655443
No 119
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.81 E-value=0.00046 Score=74.66 Aligned_cols=193 Identities=15% Similarity=0.149 Sum_probs=118.1
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccc----cccceEEEEEeCCccCHHHHHHHHHHhc
Q 048507 195 TEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQ----DHFDLKAWTCVSDDFDVKGLTKTILRSV 270 (1448)
Q Consensus 195 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l 270 (1448)
+.++++.+.+... ...+.+.+.|+|..|+|||++++++.+..-.. ..--.++.|.....++...++..|+.++
T Consensus 44 ~~L~~L~~Ll~~P---~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 44 EALDRLEELLEYP---KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred HHHHHHHHHHhCC---cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh
Confidence 3445555555433 34566789999999999999999998643211 1112577788889999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHhCC-ccEEEEEecCCCC------ChhhHhhhcccccCCCCCcEEEEEcCchhhhhccC--
Q 048507 271 TKQTIDDSDLNLLQEELKKKLSQ-KKFLLVLDDVWNE------NYNDWVRLSRPFEAGAPGSKIIVTTRNQEVADIMG-- 341 (1448)
Q Consensus 271 ~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~-- 341 (1448)
+...............+.+.++. +.-+||+|.+.+. .+.+.-...+.+.+.-.=+-|.|-|++..-+-...
T Consensus 121 gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~Q 200 (302)
T PF05621_consen 121 GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQ 200 (302)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHH
Confidence 98876666666666666666654 3458899999652 11122223333433333445666666432221111
Q ss_pred ---CcceEeCCCCCHH-HHHHHHhhccc------CCchhhHHHHHHHHHhcCCchHHHH
Q 048507 342 ---TASAYQLKKLSID-DCLAVVAQHSL------GSDKLLEEIGKKIVAKCDGLPLAAQ 390 (1448)
Q Consensus 342 ---~~~~~~l~~l~~~-~a~~l~~~~~~------~~~~~~~~~~~~i~~~~~g~PLal~ 390 (1448)
-...+.+..-..+ +...|+..... .+.-...+.+..|...++|+.=-+.
T Consensus 201 La~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 201 LASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 1234556655544 34445433211 1112346789999999999875443
No 120
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.00039 Score=82.92 Aligned_cols=193 Identities=13% Similarity=0.138 Sum_probs=110.7
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.+++|-+..++.+..++..+. -.++..++|+.|+||||+|+.+++..-....-+. -.+. .-...+.+.
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~---~pC~----~C~~C~~~~ 81 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS---TPCD----TCIQCQSAL 81 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC---CCCc----ccHHHHHHh
Confidence 468999999999999886442 3456789999999999999988763211000000 0000 000000000
Q ss_pred Hhcc-----CCCCCCCCHHHHHHHHHHH----hCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCch-hhh
Q 048507 268 RSVT-----KQTIDDSDLNLLQEELKKK----LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQ-EVA 337 (1448)
Q Consensus 268 ~~l~-----~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~ 337 (1448)
.... .........+++.+.+... ..+++-++|+|+++.........+...+......+++|++|.+. .+.
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~ 161 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLP 161 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCc
Confidence 0000 0000111233333333221 12456689999998776666677766666555667777666553 222
Q ss_pred hcc-CCcceEeCCCCCHHHHHHHHhhcccCC-chhhHHHHHHHHHhcCCchHHHHHH
Q 048507 338 DIM-GTASAYQLKKLSIDDCLAVVAQHSLGS-DKLLEEIGKKIVAKCDGLPLAAQTL 392 (1448)
Q Consensus 338 ~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~-~~~~~~~~~~i~~~~~g~PLal~~~ 392 (1448)
... .-...+++.+++.++....+.+.+... ....++.+..|++.++|.+--+...
T Consensus 162 ~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 162 ATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred hHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 211 123579999999999988877544322 1334677889999999988544333
No 121
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.80 E-value=2.1e-06 Score=91.59 Aligned_cols=84 Identities=18% Similarity=0.176 Sum_probs=53.8
Q ss_pred ccccEEEEecCCCch----hhhhhcccCCccceeeeccccccc----ccCc-------ccCCCCCccEEEcccCCCcccc
Q 048507 1159 ESLKSLRVWDCPKLE----SIAERLDNNTSLEIIRIAYCENLK----ILPS-------GLHNLRQLQEIEIRRCGNLVSF 1223 (1448)
Q Consensus 1159 ~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~Ls~n~~~~----~~p~-------~l~~l~~L~~L~L~~~~~l~~l 1223 (1448)
.+++.++|++|..-. .+...+.+.++|+..++|+ -+.+ .+|. .+..+++|++|+||+|-.--..
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 478888888887643 3445677777888888886 3333 2333 3456778888888887443322
Q ss_pred CCC----CCCCCCccEEEecCccC
Q 048507 1224 PKG----GLPGAKLTRLEISDCNR 1243 (1448)
Q Consensus 1224 p~~----~~~~~~L~~L~l~~~~~ 1243 (1448)
+.. +.++++|++|.|.+|..
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCC
Confidence 222 23467888888888763
No 122
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00033 Score=82.42 Aligned_cols=174 Identities=14% Similarity=0.236 Sum_probs=103.0
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccc------cccceE-EEEEeCCccCHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQ------DHFDLK-AWTCVSDDFDVK 260 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~------~~f~~~-~wv~~~~~~~~~ 260 (1448)
.+++|.+..++.+..++..+. -.+.+.++|++|+|||++|+.+++..... ..|... +-++...
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~----- 86 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAAS----- 86 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecccc-----
Confidence 457899999999999986432 34688899999999999999997632111 111111 1111111
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHH----hCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEc-Cchh
Q 048507 261 GLTKTILRSVTKQTIDDSDLNLLQEELKKK----LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTT-RNQE 335 (1448)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~ 335 (1448)
....+++.+.+.+. ..+++-++|+|++.......+..+...+......+.+|++| +...
T Consensus 87 ----------------~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~k 150 (367)
T PRK14970 87 ----------------NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHK 150 (367)
T ss_pred ----------------CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCccc
Confidence 11122222222111 12455689999996655445666655444433445555554 3333
Q ss_pred hhhcc-CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchH
Q 048507 336 VADIM-GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPL 387 (1448)
Q Consensus 336 v~~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PL 387 (1448)
+.... .....+++++++.++....+...+.... ...++.+..|++.++|.+-
T Consensus 151 l~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 151 IIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALR 204 (367)
T ss_pred CCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHH
Confidence 32221 2235789999999998888876543322 3346788889999998665
No 123
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=8.1e-07 Score=91.94 Aligned_cols=62 Identities=18% Similarity=0.280 Sum_probs=33.7
Q ss_pred cccCCccceeeecccccccc-cCcccCCCCCccEEEcccCCCccccCCC---CCCCCCccEEEecCcc
Q 048507 1179 LDNNTSLEIIRIAYCENLKI-LPSGLHNLRQLQEIEIRRCGNLVSFPKG---GLPGAKLTRLEISDCN 1242 (1448)
Q Consensus 1179 ~~~l~~L~~L~Ls~n~~~~~-~p~~l~~l~~L~~L~L~~~~~l~~lp~~---~~~~~~L~~L~l~~~~ 1242 (1448)
...+++|..||||+|..++. .-..|.+++.|++|.++.|-.+ +|.. +...|+|.+|++.+|-
T Consensus 309 ~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 309 VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 44566666666666654432 2233455666777777666432 2322 2334667777776653
No 124
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00046 Score=82.55 Aligned_cols=179 Identities=13% Similarity=0.151 Sum_probs=106.2
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccc-c------------------ccceE
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQ-D------------------HFDLK 248 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~------------------~f~~~ 248 (1448)
.+++|.+.-++.+..++..+. -.+...++|+.|+||||+|+.++...... . .+..+
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 357899999999999996532 24567789999999999999987632110 0 01111
Q ss_pred EEEEeCCccCHHHHHHHHHHhccCCCCCCCCHH---HHHHHHHHH-hCCccEEEEEecCCCCChhhHhhhcccccCCCCC
Q 048507 249 AWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLN---LLQEELKKK-LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPG 324 (1448)
Q Consensus 249 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~---~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 324 (1448)
+++..+ .....+ .+.+.+... ..+++-++|+|+++.........+...+......
T Consensus 91 ~eidaa---------------------s~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~ 149 (486)
T PRK14953 91 IEIDAA---------------------SNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPR 149 (486)
T ss_pred EEEeCc---------------------cCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCC
Confidence 111111 111122 222222111 1355679999999766555566666666554445
Q ss_pred cEEEEEc-Cchhhhhcc-CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchHHHHHH
Q 048507 325 SKIIVTT-RNQEVADIM-GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPLAAQTL 392 (1448)
Q Consensus 325 s~ilvTt-R~~~v~~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal~~~ 392 (1448)
..+|++| +...+...+ .....+++.+++.++....+...+.... ....+.+..|++.++|.+-.+...
T Consensus 150 ~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 150 TIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred eEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 5555544 433333221 2235789999999998887776543222 334567788999999976544333
No 125
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.78 E-value=0.00011 Score=86.10 Aligned_cols=179 Identities=15% Similarity=0.133 Sum_probs=96.0
Q ss_pred cCeEeccchhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCH
Q 048507 187 EAQVYGRETEKKDVVELLLRDDL-------SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDV 259 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 259 (1448)
.+++.|++++++++.+.+.-.-. -+-...+-|.++|++|+|||++|+++++. ....| +.+..
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~~-----i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCCE-----EEeeh----
Confidence 45788999999999887642110 01134567889999999999999999973 22222 22211
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCC-----------hhhHhhhcc---cccC--CCC
Q 048507 260 KGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNEN-----------YNDWVRLSR---PFEA--GAP 323 (1448)
Q Consensus 260 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------~~~~~~l~~---~l~~--~~~ 323 (1448)
.++ ..... ......+...+...-...+.+|++|+++... ......+.. .+.. ...
T Consensus 199 ~~l----~~~~~-----g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 199 SEL----VQKFI-----GEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred HHH----hHhhc-----cchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 111 11110 0111122222222223567899999995420 011111211 1111 123
Q ss_pred CcEEEEEcCchhhhh-cc----CCcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCc
Q 048507 324 GSKIIVTTRNQEVAD-IM----GTASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGL 385 (1448)
Q Consensus 324 gs~ilvTtR~~~v~~-~~----~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~ 385 (1448)
+.+||.||...+... .+ .....+++++.+.++..++|..+.....-........+++.+.|.
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~ 336 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGA 336 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCC
Confidence 567777776543222 11 123468999999999999998775433211111234566666653
No 126
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.00032 Score=88.71 Aligned_cols=189 Identities=11% Similarity=0.083 Sum_probs=109.8
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.++||.+..++.|..++.... -.+.+.++|+.|+||||+|+.+++........... .|... ...+.|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---pCg~C----~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---PCGEC----DSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---CCccc----HHHHHHH
Confidence 368999999999999986532 23567899999999999999998643211111000 00000 0011111
Q ss_pred Hh-------ccCCCCCCCCHHHHHHHHHH----HhCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEc-Cchh
Q 048507 268 RS-------VTKQTIDDSDLNLLQEELKK----KLSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTT-RNQE 335 (1448)
Q Consensus 268 ~~-------l~~~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~ 335 (1448)
.. +.........++++.+...+ -..+++-++|||+++......+..|...+......+.+|++| ....
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 00 00000011223333322111 123556689999998877777777777776655566666555 4334
Q ss_pred hhhcc-CCcceEeCCCCCHHHHHHHHhhcccCC-chhhHHHHHHHHHhcCCchHH
Q 048507 336 VADIM-GTASAYQLKKLSIDDCLAVVAQHSLGS-DKLLEEIGKKIVAKCDGLPLA 388 (1448)
Q Consensus 336 v~~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~-~~~~~~~~~~i~~~~~g~PLa 388 (1448)
+...+ .-...|++..++.++..+++.+..... .....+....|++.++|.+..
T Consensus 163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 44332 224679999999999888777643211 133456677899999998743
No 127
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.74 E-value=0.00012 Score=82.50 Aligned_cols=91 Identities=19% Similarity=0.229 Sum_probs=63.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCc--cCHHHHHHHHHHhccCCCCCCCCHH------HHHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDD--FDVKGLTKTILRSVTKQTIDDSDLN------LLQE 285 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 285 (1448)
....++|+|++|+|||||++.+++.... .+|+..+|+.+.+. .++.++++.+...+-....+..... .+.+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 3467899999999999999999986433 37999999998866 7899999998665544333322111 1111
Q ss_pred HHHHH-hCCccEEEEEecCCC
Q 048507 286 ELKKK-LSQKKFLLVLDDVWN 305 (1448)
Q Consensus 286 ~l~~~-l~~~~~LlVlDdv~~ 305 (1448)
..... -.+++++|++|.+..
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhH
Confidence 11122 358899999999943
No 128
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.00044 Score=82.25 Aligned_cols=179 Identities=15% Similarity=0.161 Sum_probs=107.2
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc---------------------ccc
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQD---------------------HFD 246 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~f~ 246 (1448)
.+++|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++...... +++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 468899999999999986532 236788999999999999999876321110 011
Q ss_pred eEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHH---HHHHHH-hCCccEEEEEecCCCCChhhHhhhcccccCCC
Q 048507 247 LKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQ---EELKKK-LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGA 322 (1448)
Q Consensus 247 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~---~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~ 322 (1448)
.+++.... ....+++. +.+... ..+++-++|+|+++.........+...+....
T Consensus 92 -~~~i~g~~---------------------~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~ 149 (451)
T PRK06305 92 -VLEIDGAS---------------------HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPP 149 (451)
T ss_pred -eEEeeccc---------------------cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCC
Confidence 11111100 11122222 111111 12566789999996655445555666665544
Q ss_pred CCcEEEEEcC-chhhhhcc-CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCch-HHHHHHH
Q 048507 323 PGSKIIVTTR-NQEVADIM-GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLP-LAAQTLG 393 (1448)
Q Consensus 323 ~gs~ilvTtR-~~~v~~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~P-Lal~~~~ 393 (1448)
..+.+|++|. ...+...+ .....+++.++++++....+...+.... ...++.+..|++.++|.+ .|+..+-
T Consensus 150 ~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 150 QHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred CCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5666666553 33332222 2235789999999998888776543222 345677889999999966 4444443
No 129
>PRK06620 hypothetical protein; Validated
Probab=97.73 E-value=0.0004 Score=73.67 Aligned_cols=135 Identities=13% Similarity=0.059 Sum_probs=79.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCcc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKK 295 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 295 (1448)
+.+.|+|++|+|||+|++.+++... . .++. .... . + +.. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~--------------------~-~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF--------------------N-E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh--------------------c-h-------hHH-hcC
Confidence 6689999999999999999876431 1 1211 0000 0 0 001 123
Q ss_pred EEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchhh-------hhccCCcceEeCCCCCHHHHHHHHhhcccCC-
Q 048507 296 FLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQEV-------ADIMGTASAYQLKKLSIDDCLAVVAQHSLGS- 367 (1448)
Q Consensus 296 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v-------~~~~~~~~~~~l~~l~~~~a~~l~~~~~~~~- 367 (1448)
-++++||++.........+...+. ..|..||+|++.... ...+....++++++++.++-.+++.+.+...
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 478899996322111212211111 346689999874322 2233444589999999999888887765322
Q ss_pred chhhHHHHHHHHHhcCCchHHHH
Q 048507 368 DKLLEEIGKKIVAKCDGLPLAAQ 390 (1448)
Q Consensus 368 ~~~~~~~~~~i~~~~~g~PLal~ 390 (1448)
-...+++.+-|++.+.|.--.+.
T Consensus 165 l~l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 165 VTISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred CCCCHHHHHHHHHHccCCHHHHH
Confidence 23456777788888877554443
No 130
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.73 E-value=1.3e-05 Score=85.86 Aligned_cols=251 Identities=21% Similarity=0.273 Sum_probs=136.4
Q ss_pred hhhcccCceeEEEeCCCCcc-----ccCccccCCccceEEeccCc---cc-cccChhh-------hccccccEEeccCCc
Q 048507 589 TELFKLQRLRVFSLRGYRID-----ELPDSIGDLRYFRYLNLSGT---EI-RTLPESV-------NKLYNLHSLLLEDCD 652 (1448)
Q Consensus 589 ~~~~~l~~L~~L~L~~n~i~-----~lp~~i~~l~~L~~L~Ls~n---~i-~~lp~~i-------~~L~~L~~L~L~~n~ 652 (1448)
+.+-.+..++.|+|++|.+. .+-..+.+.++|+.-++|.- +. ..+|+.+ -..++|++||||.|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 33447889999999999985 35566777889999999864 22 2566544 455689999999985
Q ss_pred hhhccccc----ccccCCCCeeeecCCCCccccccc-cCcccccccccceecccCCCCCccccccccccCceeEEeecCC
Q 048507 653 RLKKLCAD----MGNLAKLHHLKNSNTKSLEEMPVG-IGRLTSLQTLCNFVVGQGSGSGLRELKLLTHLHGTLKISKLEN 727 (1448)
Q Consensus 653 ~~~~lp~~----i~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~ 727 (1448)
.-..-++. +.+++.|++|+|.+|. ++..... +++ .|..|.. . +..++-..|+ .+...+-.-
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~--al~~l~~---~-------kk~~~~~~Lr-v~i~~rNrl 169 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGR--ALFELAV---N-------KKAASKPKLR-VFICGRNRL 169 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHH--HHHHHHH---H-------hccCCCcceE-EEEeecccc
Confidence 43333333 5678889999998887 4433211 221 1222210 0 0000111111 111111000
Q ss_pred ccchhhhHHhhcCCCCCCCeEEEEeecCCCCCCChhhhhHHhhhccCCCCCCcceeEEeceecCCCCCceEeCccccCCC
Q 048507 728 VKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREVETEMGVLDMLKPHTNLEQFCIKGYGVSGMSRVKRLGSEFYGND 807 (1448)
Q Consensus 728 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~l~~l~~l~~~~~~~~ 807 (1448)
.+.....+...++..+.|+.+.+..|..... ......+.+..+++|+.|+|..|.++.-..+
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~e-------G~~al~eal~~~~~LevLdl~DNtft~egs~----------- 231 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPE-------GVTALAEALEHCPHLEVLDLRDNTFTLEGSV----------- 231 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCc-------hhHHHHHHHHhCCcceeeecccchhhhHHHH-----------
Confidence 0112233445566677788888776543211 1123445566677777777777663321100
Q ss_pred CCCCCCccceeeccccccccccccCCCcccCccCcccceeecccCccccc--------CCCCCCCCccEEEEccccCcc-
Q 048507 808 SPIPFPCLETLLFENMQEWEDWIPHGFSQGVEGFPKLRELQILSCSKLQG--------TFPEHLPALEKLVIKGCEELS- 878 (1448)
Q Consensus 808 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~--------~~p~~l~~L~~L~l~~~~~l~- 878 (1448)
. +.. ....+++|+.|++++| .++. .+-...|+|+.|.+.+|..-.
T Consensus 232 -----------~------Lak--------aL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d 285 (382)
T KOG1909|consen 232 -----------A------LAK--------ALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRD 285 (382)
T ss_pred -----------H------HHH--------Hhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHH
Confidence 0 000 0234456666666666 3331 122346777777777765422
Q ss_pred ------cccccccccceeecccccc
Q 048507 879 ------VLVSSLPALCKLQIGGCKK 897 (1448)
Q Consensus 879 ------~~~~~l~~L~~L~l~~~~~ 897 (1448)
..+...|.|..|.+++|..
T Consensus 286 a~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 286 AALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHHHhcchhhHHhcCCcccc
Confidence 2244578888888888875
No 131
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.69 E-value=0.0002 Score=79.40 Aligned_cols=160 Identities=14% Similarity=0.147 Sum_probs=79.6
Q ss_pred eEeccchhHHHHHHHHhc---------CCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCH
Q 048507 189 QVYGRETEKKDVVELLLR---------DDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDV 259 (1448)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~---------~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 259 (1448)
.++|.+..+++|.+.... ......+...-+.++|++|+||||+|+.+++.....+......++.+...
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 478887777666543221 11112334566789999999999999999863211111111122333221
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCC--------hhhHhhhcccccCCCCCcEEEEEc
Q 048507 260 KGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNEN--------YNDWVRLSRPFEAGAPGSKIIVTT 331 (1448)
Q Consensus 260 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ilvTt 331 (1448)
++ ..... ..........+.+. ..-+|++|+++.-. ......+...+........+++++
T Consensus 84 -~l----~~~~~-----g~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 84 -DL----VGEYI-----GHTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred -Hh----hhhhc-----cchHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 11 11110 01112222223222 13488999996421 112333444444433344555555
Q ss_pred Cchhhhh------cc--CCcceEeCCCCCHHHHHHHHhhcc
Q 048507 332 RNQEVAD------IM--GTASAYQLKKLSIDDCLAVVAQHS 364 (1448)
Q Consensus 332 R~~~v~~------~~--~~~~~~~l~~l~~~~a~~l~~~~~ 364 (1448)
...+... .+ .....+++++++.++-.+++.+.+
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~ 191 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMV 191 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHH
Confidence 4332211 11 112457889999999888887664
No 132
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.00064 Score=83.81 Aligned_cols=174 Identities=14% Similarity=0.176 Sum_probs=109.2
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccc---------------------cccc
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQ---------------------DHFD 246 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~f~ 246 (1448)
.+++|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.++...... .+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 368999999999999996542 34668899999999999998887632110 1122
Q ss_pred eEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH----hCCccEEEEEecCCCCChhhHhhhcccccCCC
Q 048507 247 LKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKK----LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGA 322 (1448)
Q Consensus 247 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~ 322 (1448)
+..++... ....+++.+.+.+. ..+++-++|+|++.......+..+...+....
T Consensus 92 -~~~ld~~~---------------------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp 149 (614)
T PRK14971 92 -IHELDAAS---------------------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP 149 (614)
T ss_pred -eEEecccc---------------------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCC
Confidence 11111111 11233333332211 12455688999997776666777777766655
Q ss_pred CCcEEEE-EcCchhhhhcc-CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchHH
Q 048507 323 PGSKIIV-TTRNQEVADIM-GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPLA 388 (1448)
Q Consensus 323 ~gs~ilv-TtR~~~v~~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PLa 388 (1448)
..+.+|+ |++...+...+ .....+++.+++.++....+.+.+.... ....+.+..|++.++|..--
T Consensus 150 ~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~ 218 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRD 218 (614)
T ss_pred CCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 5666555 54544444332 2346799999999999888876443222 33456788899999996643
No 133
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=4.6e-06 Score=86.54 Aligned_cols=63 Identities=22% Similarity=0.318 Sum_probs=36.6
Q ss_pred CCCccceeeccCCCCcccccccCCCchhhhccccCCCCccccEEEEecCCCchhhhh---hcccCCccceeeecccccc
Q 048507 1121 TSSLLEELDINSCPSLTCIFSKNELPATLESLEVGNLPESLKSLRVWDCPKLESIAE---RLDNNTSLEIIRIAYCENL 1196 (1448)
Q Consensus 1121 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~~~~~---~~~~l~~L~~L~Ls~n~~~ 1196 (1448)
.+|+|..||+++|..++. +.+. .+..+ +.|++|.++.|..+ +|+ .+...++|.+|++-+|---
T Consensus 311 rcp~l~~LDLSD~v~l~~--------~~~~--~~~kf-~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKN--------DCFQ--EFFKF-NYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred hCCceeeeccccccccCc--------hHHH--HHHhc-chheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccCc
Confidence 456677777777665552 1110 11122 27778888777643 232 4677788888888776543
No 134
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.67 E-value=0.00084 Score=81.72 Aligned_cols=190 Identities=14% Similarity=0.130 Sum_probs=111.1
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.+++|-+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++..-....... ..+....+- +.+.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHH
Confidence 468999999999999996542 3467889999999999999999874321111000 001111011 1111
Q ss_pred HhccC-----CCCCCCCHHHHHHHH---HH-HhCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCc-hhhh
Q 048507 268 RSVTK-----QTIDDSDLNLLQEEL---KK-KLSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRN-QEVA 337 (1448)
Q Consensus 268 ~~l~~-----~~~~~~~~~~~~~~l---~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~ 337 (1448)
..-.. ........+++.+.. .. -..+++-++|+|++.......+..+...+......+.+|.+|.. ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 10000 000112233333222 11 12356668999999777666677777776655556666665543 3333
Q ss_pred hcc-CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchHHH
Q 048507 338 DIM-GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPLAA 389 (1448)
Q Consensus 338 ~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal 389 (1448)
..+ .....+++++++.++..+.+...+.... ...++.+..|++.++|.+-.+
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 222 2235689999999998888876553222 344677788999999977543
No 135
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.66 E-value=1.2e-05 Score=73.70 Aligned_cols=97 Identities=25% Similarity=0.246 Sum_probs=82.7
Q ss_pred hhhhhhcccCceeEEEeCCCCccccCcccc-CCccceEEeccCccccccChhhhccccccEEeccCCchhhccccccccc
Q 048507 586 SILTELFKLQRLRVFSLRGYRIDELPDSIG-DLRYFRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNL 664 (1448)
Q Consensus 586 ~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~-~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L 664 (1448)
+.+..+.+...|...+|++|.+..+|..|. ..+.++.|+|++|.|..+|..+..++.|+.|+++.| .+...|+.|..|
T Consensus 44 davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L 122 (177)
T KOG4579|consen 44 DAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPL 122 (177)
T ss_pred HHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHH
Confidence 345555677889999999999999998884 556899999999999999998999999999999996 567788888889
Q ss_pred CCCCeeeecCCCCccccccc
Q 048507 665 AKLHHLKNSNTKSLEEMPVG 684 (1448)
Q Consensus 665 ~~L~~L~l~~~~~l~~~p~~ 684 (1448)
.+|-.|+..+|. ...+|..
T Consensus 123 ~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 123 IKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred HhHHHhcCCCCc-cccCcHH
Confidence 999999998888 6777765
No 136
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.66 E-value=0.0003 Score=90.33 Aligned_cols=178 Identities=15% Similarity=0.149 Sum_probs=96.1
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccc----cccceEEE-EEeCCccCHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQ----DHFDLKAW-TCVSDDFDVKGL 262 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~w-v~~~~~~~~~~~ 262 (1448)
++++||+.++.++++.|.... ..-+.++|.+|+||||+|+.+++..... .-.+..+| +..+.-
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l------ 254 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL------ 254 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh------
Confidence 578999999999999996542 2345699999999999999998732100 01122333 222210
Q ss_pred HHHHHHhccCCCCCCCCH-HHHHHHHHHHh-CCccEEEEEecCCCCC-------hhhHhhhcccccCCCCCcEEEEEcCc
Q 048507 263 TKTILRSVTKQTIDDSDL-NLLQEELKKKL-SQKKFLLVLDDVWNEN-------YNDWVRLSRPFEAGAPGSKIIVTTRN 333 (1448)
Q Consensus 263 ~~~i~~~l~~~~~~~~~~-~~~~~~l~~~l-~~~~~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~gs~ilvTtR~ 333 (1448)
..+.. ...+. +.+...+.+.- .+++.+|++|+++... ..+...+..+.... ..-++|-||..
T Consensus 255 -------~ag~~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~-G~l~~IgaTT~ 325 (852)
T TIGR03345 255 -------QAGAS-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR-GELRTIAATTW 325 (852)
T ss_pred -------hcccc-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC-CCeEEEEecCH
Confidence 00000 01111 22222232222 2468999999985431 11111222222221 23456666665
Q ss_pred hhhhhcc-------CCcceEeCCCCCHHHHHHHHhhcccC-----CchhhHHHHHHHHHhcCCch
Q 048507 334 QEVADIM-------GTASAYQLKKLSIDDCLAVVAQHSLG-----SDKLLEEIGKKIVAKCDGLP 386 (1448)
Q Consensus 334 ~~v~~~~-------~~~~~~~l~~l~~~~a~~l~~~~~~~-----~~~~~~~~~~~i~~~~~g~P 386 (1448)
.+....+ .-...+.+++++.+++.+++...... .-...++....+++.+.+..
T Consensus 326 ~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 326 AEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred HHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 4332211 12257999999999999997543211 11233556666777666544
No 137
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.66 E-value=0.0006 Score=81.20 Aligned_cols=160 Identities=16% Similarity=0.212 Sum_probs=92.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQK 294 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1448)
...+.|+|..|+|||+||+++++....+..=..++++++ .++...+...+... ..+. +.+.+++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~----~~~~~~~- 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEE----FKEKYRS- 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHH----HHHHHHh-
Confidence 456889999999999999999984321111134566653 23344444444321 2222 2233322
Q ss_pred cEEEEEecCCCCChhh-H-hhhcccccC-CCCCcEEEEEcCch-h--------hhhccCCcceEeCCCCCHHHHHHHHhh
Q 048507 295 KFLLVLDDVWNENYND-W-VRLSRPFEA-GAPGSKIIVTTRNQ-E--------VADIMGTASAYQLKKLSIDDCLAVVAQ 362 (1448)
Q Consensus 295 ~~LlVlDdv~~~~~~~-~-~~l~~~l~~-~~~gs~ilvTtR~~-~--------v~~~~~~~~~~~l~~l~~~~a~~l~~~ 362 (1448)
.-+||+||++...... + +.+...+.. ...|..+|+|+... . +...+.....+++++.+.++-.+++.+
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHH
Confidence 3488999996532111 1 122222211 11345688877642 1 122233335689999999999999888
Q ss_pred cccCCc-hhhHHHHHHHHHhcCCchHHHH
Q 048507 363 HSLGSD-KLLEEIGKKIVAKCDGLPLAAQ 390 (1448)
Q Consensus 363 ~~~~~~-~~~~~~~~~i~~~~~g~PLal~ 390 (1448)
.+.... ...+++..-|++.+.|..-.+.
T Consensus 280 ~~~~~~~~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 280 KAEEEGLELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHcCCCCCHHHHHHHHHhcCCCHHHHH
Confidence 764333 3456778888888888766443
No 138
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.63 E-value=0.0013 Score=69.04 Aligned_cols=280 Identities=15% Similarity=0.165 Sum_probs=137.3
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.+|||.++-++++.=.+..... .....--+.++|++|.||||||.-+++.. ...+ -++.+....-..-+..++
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~Em--gvn~----k~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANEL--GVNL----KITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHHh--cCCe----EecccccccChhhHHHHH
Confidence 5799999888888777755433 44566788999999999999999999843 2222 122222212122223333
Q ss_pred HhccCCCCC-CCCHHHHHHHHHH----HhCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchhhhhccCC
Q 048507 268 RSVTKQTID-DSDLNLLQEELKK----KLSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQEVADIMGT 342 (1448)
Q Consensus 268 ~~l~~~~~~-~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~ 342 (1448)
..+...+.- .++...+...+.+ .+.+-+.=|++.--... ..+.-.+++ =+-|=-|||.-.+...+..
T Consensus 99 t~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~A-----rsv~ldLpp---FTLIGATTr~G~lt~PLrd 170 (332)
T COG2255 99 TNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAA-----RSIRLDLPP---FTLIGATTRAGMLTNPLRD 170 (332)
T ss_pred hcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCcc-----ceEeccCCC---eeEeeeccccccccchhHH
Confidence 333222110 0111111111111 12222332333221110 011112222 1234458886544333221
Q ss_pred --cceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchHHHHHHHhhhccCCChhHHHHHHhccccCCCCc
Q 048507 343 --ASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPLAAQTLGGLLRGKCDRSDWEDLLSCKIWNLPEE 419 (1448)
Q Consensus 343 --~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~ 419 (1448)
.-+.+++--+.+|-.++..+.+..-. +..++.+.+|+++..|-|--..-+-+..+ ++..+.... .+...
T Consensus 171 RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVR------Dfa~V~~~~--~I~~~ 242 (332)
T COG2255 171 RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRVR------DFAQVKGDG--DIDRD 242 (332)
T ss_pred hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHHHHH------HHHHHhcCC--cccHH
Confidence 23577888899999998888764333 45577899999999999964433333332 222211100 00000
Q ss_pred -ccchhhHHHHhhhcCChhhHHHHhhhcccCCCceeCHHHHHHHHHHcCCCcCCCCCCChHHHHHHHHHHHHhCCccccc
Q 048507 420 -RCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKESGNPNEDLGRKFFQELRGRSFFQQS 498 (1448)
Q Consensus 420 -~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~ 498 (1448)
-+.....|.+-=..|+.-.+..+..+.-...|-.+-.+.+... -| .+..+.||+.|= -|++.+|++..
T Consensus 243 ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~---lg-----e~~~TiEdv~EP---yLiq~gfi~RT 311 (332)
T COG2255 243 IADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAA---LG-----EDRDTIEDVIEP---YLIQQGFIQRT 311 (332)
T ss_pred HHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHH---hc-----CchhHHHHHHhH---HHHHhchhhhC
Confidence 0011122222223345555555555444434444444443321 11 123445555544 37899999876
Q ss_pred CCC
Q 048507 499 SNN 501 (1448)
Q Consensus 499 ~~~ 501 (1448)
..+
T Consensus 312 pRG 314 (332)
T COG2255 312 PRG 314 (332)
T ss_pred CCc
Confidence 543
No 139
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.001 Score=82.06 Aligned_cols=194 Identities=12% Similarity=0.190 Sum_probs=110.9
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.+++|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++........ .... .....-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~-~~~~----~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLNSD-KPTP----EPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCCcC-CCCC----CCCcccHHHHHHh
Confidence 467899999999999886542 23567899999999999999998743211110 0000 0111112222222
Q ss_pred HhccC-----CCCCCCCHHHHHHHHHHH----hCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCc-hhhh
Q 048507 268 RSVTK-----QTIDDSDLNLLQEELKKK----LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRN-QEVA 337 (1448)
Q Consensus 268 ~~l~~-----~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~ 337 (1448)
..... ........+.+.+.+... ..+++-++|+|+++......+..+...+......+.+|++|.+ ..+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 21111 001112333333333221 1245568999999776666677776666654445555544443 3333
Q ss_pred hcc-CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchHHHHH
Q 048507 338 DIM-GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPLAAQT 391 (1448)
Q Consensus 338 ~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal~~ 391 (1448)
..+ .....+++..++.++....+.+.+.... ....+.+..|++.++|.+..+..
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 222 2235788889999888877765443211 23346688899999998764443
No 140
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.62 E-value=0.00027 Score=81.45 Aligned_cols=147 Identities=14% Similarity=0.147 Sum_probs=83.3
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.+++|.+...+.+..++..+. -..++.++|++|+|||++|+.+++.. ... ...++.+. ... ...+..+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-----~~~~lll~G~~G~GKT~la~~l~~~~--~~~---~~~i~~~~-~~~-~~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-----IPNMLLHSPSPGTGKTTVAKALCNEV--GAE---VLFVNGSD-CRI-DFVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHh--Ccc---ceEeccCc-ccH-HHHHHHH
Confidence 467999999999999986432 34677789999999999999998732 211 23344433 111 1111111
Q ss_pred HhccCCCCCCCCHHHHHHHHHH-HhCCccEEEEEecCCCC-ChhhHhhhcccccCCCCCcEEEEEcCchhh-hhcc-CCc
Q 048507 268 RSVTKQTIDDSDLNLLQEELKK-KLSQKKFLLVLDDVWNE-NYNDWVRLSRPFEAGAPGSKIIVTTRNQEV-ADIM-GTA 343 (1448)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~~~~-~~~ 343 (1448)
... ... ...+.+-+||+|+++.. .......+...+.....++++|+||..... ...+ ...
T Consensus 89 ~~~----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 89 TRF----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHH----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 110 000 01234568999999655 222223333334444467788888865321 1111 112
Q ss_pred ceEeCCCCCHHHHHHHHhh
Q 048507 344 SAYQLKKLSIDDCLAVVAQ 362 (1448)
Q Consensus 344 ~~~~l~~l~~~~a~~l~~~ 362 (1448)
..+.++..+.++..+++..
T Consensus 153 ~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 3567777777777665543
No 141
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.60 E-value=0.0021 Score=70.30 Aligned_cols=168 Identities=18% Similarity=0.179 Sum_probs=104.6
Q ss_pred cCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHH
Q 048507 187 EAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTI 266 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 266 (1448)
.+.|.+|+.++..+...+...+ ..-+..|.|+|-.|.|||.+.+++++.. . -..+|+++-+.++.+.++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhc--C---CcceeeehHHhccHHHHHHHH
Confidence 4567899999999999886542 1234567999999999999999999854 1 236899999999999999999
Q ss_pred HHhccCCCCCCCCH----H---HHHHHHHHH--h--CCccEEEEEecCCCCChhhHhhh-ccc---ccC-CCCCcEEEEE
Q 048507 267 LRSVTKQTIDDSDL----N---LLQEELKKK--L--SQKKFLLVLDDVWNENYNDWVRL-SRP---FEA-GAPGSKIIVT 330 (1448)
Q Consensus 267 ~~~l~~~~~~~~~~----~---~~~~~l~~~--l--~~~~~LlVlDdv~~~~~~~~~~l-~~~---l~~-~~~gs~ilvT 330 (1448)
+.+++..+.+..-. + .....+.++ . +++.++||||+++.- .+.... ... +.. .....-+|++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l--rD~~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL--RDMDAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh--hccchHHHHHHHHHHHHhCCCceEEEE
Confidence 99985222221111 2 222223331 1 246899999999543 222211 000 000 1122334444
Q ss_pred cCchhh---hhccCCc--ceEeCCCCCHHHHHHHHhhcc
Q 048507 331 TRNQEV---ADIMGTA--SAYQLKKLSIDDCLAVVAQHS 364 (1448)
Q Consensus 331 tR~~~v---~~~~~~~--~~~~l~~l~~~~a~~l~~~~~ 364 (1448)
+-..-. ...+|.. .++....-+.+|..+++.+.-
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 443221 1223433 356778889999999887643
No 142
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.58 E-value=5.5e-05 Score=56.42 Aligned_cols=34 Identities=32% Similarity=0.499 Sum_probs=24.8
Q ss_pred ccceEEeccCccccccChhhhccccccEEeccCC
Q 048507 618 RYFRYLNLSGTEIRTLPESVNKLYNLHSLLLEDC 651 (1448)
Q Consensus 618 ~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n 651 (1448)
++|++|++++|+|+.+|..+++|++|++|++++|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 3677888888888877777777888888888776
No 143
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.57 E-value=1.5e-05 Score=95.19 Aligned_cols=105 Identities=25% Similarity=0.348 Sum_probs=81.3
Q ss_pred hhhhcccCceeEEEeCCCCccccCccccCCccceEEeccCccccccChhhhccccccEEeccCCchhhcccccccccCCC
Q 048507 588 LTELFKLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKL 667 (1448)
Q Consensus 588 ~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~~L 667 (1448)
...+..++.|..|++.+|.|..+...+..+.+|++|+|++|.|+.+ ..+..|..|+.|++++| .+..+ ..+..+++|
T Consensus 88 ~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N-~i~~~-~~~~~l~~L 164 (414)
T KOG0531|consen 88 LNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGN-LISDI-SGLESLKSL 164 (414)
T ss_pred hcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccC-cchhc-cCCccchhh
Confidence 3345688899999999999988876688899999999999999888 46777888999999997 45554 347778999
Q ss_pred CeeeecCCCCccccccc-cCcccccccccc
Q 048507 668 HHLKNSNTKSLEEMPVG-IGRLTSLQTLCN 696 (1448)
Q Consensus 668 ~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~ 696 (1448)
+.+++++|. +..+... ...+.+|+.+..
T Consensus 165 ~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l 193 (414)
T KOG0531|consen 165 KLLDLSYNR-IVDIENDELSELISLEELDL 193 (414)
T ss_pred hcccCCcch-hhhhhhhhhhhccchHHHhc
Confidence 999999998 6666543 466666666643
No 144
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.57 E-value=0.0011 Score=78.90 Aligned_cols=158 Identities=18% Similarity=0.153 Sum_probs=93.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccc--ceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHF--DLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLS 292 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 292 (1448)
...+.|+|.+|+|||+||+++++.. .... ..++|+++ .++..++...+... ..+. +++...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l--~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYV--VQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH--HHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHH
Confidence 4458999999999999999999843 2222 24666754 34455555554321 2222 333333
Q ss_pred CccEEEEEecCCCCCh-hhH-hhhcccccC-CCCCcEEEEEcC-chhh--------hhccCCcceEeCCCCCHHHHHHHH
Q 048507 293 QKKFLLVLDDVWNENY-NDW-VRLSRPFEA-GAPGSKIIVTTR-NQEV--------ADIMGTASAYQLKKLSIDDCLAVV 360 (1448)
Q Consensus 293 ~~~~LlVlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~ilvTtR-~~~v--------~~~~~~~~~~~l~~l~~~~a~~l~ 360 (1448)
.+.-+||+||+..... ..+ +.+...+.. ...|..||+||. .+.- ...+.....+++++.+.++-.+++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 3456899999964311 111 122222211 113457888875 3221 122334457889999999999998
Q ss_pred hhcccCC-chhhHHHHHHHHHhcCCchHHH
Q 048507 361 AQHSLGS-DKLLEEIGKKIVAKCDGLPLAA 389 (1448)
Q Consensus 361 ~~~~~~~-~~~~~~~~~~i~~~~~g~PLal 389 (1448)
.+.+... -...+++..-|++.+.|.--.+
T Consensus 273 ~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 273 RKMLEIEHGELPEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHhcCCCCCHHHHHHHHhccccCHHHH
Confidence 8776432 2345677888888888865444
No 145
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=0.00086 Score=82.55 Aligned_cols=194 Identities=14% Similarity=0.216 Sum_probs=108.7
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.+++|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++.......... .........+.|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHh
Confidence 468999999999999886532 2466789999999999999998864211111000 0000001111111
Q ss_pred HhccC-----CCCCCCCHHHHHHHHHHHh-----CCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEE-EcCchhh
Q 048507 268 RSVTK-----QTIDDSDLNLLQEELKKKL-----SQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIV-TTRNQEV 336 (1448)
Q Consensus 268 ~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v 336 (1448)
..-.. ........+++.+ +.+.+ .+++-++|+|+++.........+...+......+.+|+ ||....+
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~-l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl 162 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRE-LRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKV 162 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHH-HHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhh
Confidence 00000 0001112222221 22221 24456899999977665666677766655445666655 5444444
Q ss_pred hhcc-CCcceEeCCCCCHHHHHHHHhhcccCC-chhhHHHHHHHHHhcCCch-HHHHHHHh
Q 048507 337 ADIM-GTASAYQLKKLSIDDCLAVVAQHSLGS-DKLLEEIGKKIVAKCDGLP-LAAQTLGG 394 (1448)
Q Consensus 337 ~~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~-~~~~~~~~~~i~~~~~g~P-Lal~~~~~ 394 (1448)
...+ .....+++++++.++....+...+... .....+.+..|++.++|.. .|+..+-.
T Consensus 163 ~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 163 PITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred hHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4332 223578899999999887776543221 1334567788999999865 45555433
No 146
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.54 E-value=0.0004 Score=88.70 Aligned_cols=155 Identities=18% Similarity=0.248 Sum_probs=83.8
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcc---ccccc-ceEEEEEeCCccCHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKR---VQDHF-DLKAWTCVSDDFDVKGLT 263 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~~~~~~~~~~~ 263 (1448)
++++||+++++++++.|.... ..-+.++|++|+|||++|+.+++... +...+ +..+|.- +...+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l- 249 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSL- 249 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHH-
Confidence 468999999999999986542 23457999999999999999987321 11111 3334421 11111
Q ss_pred HHHHHhccCCCCCCCCHHH-HHHHHHHHhCCccEEEEEecCCCCC--------hhhHhh-hcccccCCCCCcEEEEEcCc
Q 048507 264 KTILRSVTKQTIDDSDLNL-LQEELKKKLSQKKFLLVLDDVWNEN--------YNDWVR-LSRPFEAGAPGSKIIVTTRN 333 (1448)
Q Consensus 264 ~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~~~LlVlDdv~~~~--------~~~~~~-l~~~l~~~~~gs~ilvTtR~ 333 (1448)
+. ... -..+.++ +...+.+.-+.++.+|++|+++.-. ..+... +...+.. ..-++|-+|..
T Consensus 250 ---~a---~~~-~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaTt~ 320 (731)
T TIGR02639 250 ---LA---GTK-YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGSTTY 320 (731)
T ss_pred ---hh---hcc-ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEecCH
Confidence 10 000 0112222 2222222223468899999985321 011122 2222221 12345555554
Q ss_pred hhhhhcc-------CCcceEeCCCCCHHHHHHHHhhc
Q 048507 334 QEVADIM-------GTASAYQLKKLSIDDCLAVVAQH 363 (1448)
Q Consensus 334 ~~v~~~~-------~~~~~~~l~~l~~~~a~~l~~~~ 363 (1448)
.+....+ .-...+++++++.++..+++...
T Consensus 321 ~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~ 357 (731)
T TIGR02639 321 EEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGL 357 (731)
T ss_pred HHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHH
Confidence 3321111 11257899999999999998854
No 147
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.52 E-value=0.0019 Score=79.14 Aligned_cols=190 Identities=15% Similarity=0.173 Sum_probs=108.1
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.+++|.+..++.+..++..+. -.+.+.++|+.|+|||++|+.+++..-....-+. ...+.-...+.+.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~-------~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG-------EPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCccHHHHHHh
Confidence 468999999999999996542 3467788999999999999998763211110000 0000011111111
Q ss_pred HhccCC-----CCCCCCHHHHHHHHHHH----hCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEE-EcCchhhh
Q 048507 268 RSVTKQ-----TIDDSDLNLLQEELKKK----LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIV-TTRNQEVA 337 (1448)
Q Consensus 268 ~~l~~~-----~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~ 337 (1448)
...... .......+++.+.+.+. ..+++-++|+|+++......+..+...+......+.+|+ ||....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 110000 00112233222222111 135566889999977666667777666655444555554 44444333
Q ss_pred hcc-CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchHHH
Q 048507 338 DIM-GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPLAA 389 (1448)
Q Consensus 338 ~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal 389 (1448)
..+ .....+++.+++.++....+...+.... ....+.+..|++.++|.+..+
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 322 2235788999999998888776543222 334567788899999877543
No 148
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.51 E-value=0.00083 Score=80.99 Aligned_cols=159 Identities=16% Similarity=0.213 Sum_probs=94.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccc--ceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHF--DLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKL 291 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 291 (1448)
....+.|+|..|+|||+||+++++.. ...+ ..++++++. ++...+...+... ..+ .+.+.+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~----~~~~~~ 209 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNYI--LEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TME----EFKEKY 209 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHH--HHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cHH----HHHHHH
Confidence 34568899999999999999999843 3332 345566543 2333344443211 122 233333
Q ss_pred CCccEEEEEecCCCCChhh--HhhhcccccC-CCCCcEEEEEcCchh---------hhhccCCcceEeCCCCCHHHHHHH
Q 048507 292 SQKKFLLVLDDVWNENYND--WVRLSRPFEA-GAPGSKIIVTTRNQE---------VADIMGTASAYQLKKLSIDDCLAV 359 (1448)
Q Consensus 292 ~~~~~LlVlDdv~~~~~~~--~~~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~l~~~~a~~l 359 (1448)
+ +.-+||+||++...... .+.+...+.. ...|..|++|+.... +...+.....+++++.+.++-.++
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 24489999996432111 1222221111 113446888776431 223334445789999999999999
Q ss_pred HhhcccCCc-hhhHHHHHHHHHhcCCchHHHH
Q 048507 360 VAQHSLGSD-KLLEEIGKKIVAKCDGLPLAAQ 390 (1448)
Q Consensus 360 ~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal~ 390 (1448)
+.+.+.... ...+++..-|++.+.|..-.+.
T Consensus 289 l~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 289 LKKKAEEEGIDLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHH
Confidence 988765422 4556788889999998766443
No 149
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0024 Score=72.09 Aligned_cols=196 Identities=14% Similarity=0.128 Sum_probs=112.4
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccc-------------ccccceEEEEEeC
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRV-------------QDHFDLKAWTCVS 254 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-------------~~~f~~~~wv~~~ 254 (1448)
.+++|.+..++.+...+..+. -.+...++|+.|+||+++|..+++..-. ...+.-..|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 357899999999999986542 2478999999999999999888653211 1112223444321
Q ss_pred CccCHHHHHHHHHHhcc--CCCCCCCCHHHHHHHHHHHh-----CCccEEEEEecCCCCChhhHhhhcccccCCCCCcEE
Q 048507 255 DDFDVKGLTKTILRSVT--KQTIDDSDLNLLQEELKKKL-----SQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKI 327 (1448)
Q Consensus 255 ~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 327 (1448)
...+-...-.+-++..+ ........++++. .+.+.+ .+++-++|+|++...+......+...+.... .+.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 00000000001111111 0111122233332 233333 3566799999997766666666666665544 3445
Q ss_pred E-EEcCchhhhhcc-CCcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCchHHHHHH
Q 048507 328 I-VTTRNQEVADIM-GTASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGLPLAAQTL 392 (1448)
Q Consensus 328 l-vTtR~~~v~~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 392 (1448)
| +|++...+.... .-...+++.+++.++..+.+.+...... .......++..++|.|..+..+
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI--LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc--chhHHHHHHHHcCCCHHHHHHH
Confidence 4 444444444333 2246899999999999999987643211 1112357899999999765443
No 150
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.47 E-value=1.3e-05 Score=73.34 Aligned_cols=99 Identities=16% Similarity=0.227 Sum_probs=84.3
Q ss_pred CceeEEEeCCCCccccCc---cccCCccceEEeccCccccccChhhhcc-ccccEEeccCCchhhcccccccccCCCCee
Q 048507 595 QRLRVFSLRGYRIDELPD---SIGDLRYFRYLNLSGTEIRTLPESVNKL-YNLHSLLLEDCDRLKKLCADMGNLAKLHHL 670 (1448)
Q Consensus 595 ~~L~~L~L~~n~i~~lp~---~i~~l~~L~~L~Ls~n~i~~lp~~i~~L-~~L~~L~L~~n~~~~~lp~~i~~L~~L~~L 670 (1448)
+.+..+||++|.+..+++ .+....+|...+|++|.++.+|+.|... +.+++|+|++| .+..+|..+..++.|+.|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSL 105 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhc
Confidence 345668999998876654 4567788999999999999999888654 59999999995 789999999999999999
Q ss_pred eecCCCCccccccccCccccccccc
Q 048507 671 KNSNTKSLEEMPVGIGRLTSLQTLC 695 (1448)
Q Consensus 671 ~l~~~~~l~~~p~~i~~L~~L~~L~ 695 (1448)
+++.|. +...|..|..|.+|-.|+
T Consensus 106 Nl~~N~-l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 106 NLRFNP-LNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred ccccCc-cccchHHHHHHHhHHHhc
Confidence 999999 788898888888888774
No 151
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.46 E-value=0.003 Score=74.86 Aligned_cols=153 Identities=13% Similarity=0.161 Sum_probs=87.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQK 294 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1448)
...+.|+|+.|+|||+||+++++... ..-..+++++. ..+...+...+... .. +.+++.++ .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~--~~~~~v~yi~~------~~f~~~~~~~l~~~-----~~----~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR--ESGGKILYVRS------ELFTEHLVSAIRSG-----EM----QRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH--HcCCCEEEeeH------HHHHHHHHHHHhcc-----hH----HHHHHHcc-c
Confidence 45688999999999999999998432 22234555543 33444444444321 11 22333333 3
Q ss_pred cEEEEEecCCCCChhhH--hhhcccccC-CCCCcEEEEEcCch---------hhhhccCCcceEeCCCCCHHHHHHHHhh
Q 048507 295 KFLLVLDDVWNENYNDW--VRLSRPFEA-GAPGSKIIVTTRNQ---------EVADIMGTASAYQLKKLSIDDCLAVVAQ 362 (1448)
Q Consensus 295 ~~LlVlDdv~~~~~~~~--~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~l~~~~a~~l~~~ 362 (1448)
.-++++||+.......+ +.+...+.. ...|..||+||... .+...+.....+++.+++.++-.+++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 44888899855321111 122221110 11355788888542 2222334446789999999999999987
Q ss_pred cccCCc-hhhHHHHHHHHHhcCCc
Q 048507 363 HSLGSD-KLLEEIGKKIVAKCDGL 385 (1448)
Q Consensus 363 ~~~~~~-~~~~~~~~~i~~~~~g~ 385 (1448)
.+.... ...+++..-|++.+.|.
T Consensus 283 k~~~~~~~l~~evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALSIRIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHcCCCCCHHHHHHHHHhcCCC
Confidence 664332 33455666677776654
No 152
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.45 E-value=0.00069 Score=87.72 Aligned_cols=155 Identities=21% Similarity=0.235 Sum_probs=85.4
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcc---ccccc-ceEEEEEeCCccCHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKR---VQDHF-DLKAWTCVSDDFDVKGLT 263 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~~~~~~~~~~~ 263 (1448)
.+++||++++++++++|.... ..-+.++|++|+|||++|+.++.... +.... +..+|.- +...+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~~l- 246 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIGLL- 246 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHHHH-
Confidence 458999999999999996542 23456999999999999999987421 11111 2445531 11111
Q ss_pred HHHHHhccCCCCCCCCHHH-HHHHHHHHhCCccEEEEEecCCCCC-------hhhHhhhcccccCCCCCcEEEEEcCchh
Q 048507 264 KTILRSVTKQTIDDSDLNL-LQEELKKKLSQKKFLLVLDDVWNEN-------YNDWVRLSRPFEAGAPGSKIIVTTRNQE 335 (1448)
Q Consensus 264 ~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~~~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 335 (1448)
+.+... ..+.++ +...+.+.-..++.+|++|+++.-. ..+...+..+.... ..-++|.+|...+
T Consensus 247 ------~ag~~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~e 318 (821)
T CHL00095 247 ------LAGTKY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLDE 318 (821)
T ss_pred ------hccCCC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHHH
Confidence 111111 112222 2333333334568999999994210 01122222222221 2345666666554
Q ss_pred hhhcc-------CCcceEeCCCCCHHHHHHHHhh
Q 048507 336 VADIM-------GTASAYQLKKLSIDDCLAVVAQ 362 (1448)
Q Consensus 336 v~~~~-------~~~~~~~l~~l~~~~a~~l~~~ 362 (1448)
..... .....+.+...+.++...++..
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 42211 1234678888898898887764
No 153
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.0023 Score=72.60 Aligned_cols=168 Identities=13% Similarity=0.068 Sum_probs=95.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccc--------ceEEEEEeCCccCHHHHHHHHHHhccCCC-CCCCCHHHHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHF--------DLKAWTCVSDDFDVKGLTKTILRSVTKQT-IDDSDLNLLQ 284 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~ 284 (1448)
-.+.+.++|+.|+|||++|+.+++..-....- ..+.++.....+|... +.... .....++++.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~--------i~~~~~~~~i~id~iR 92 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFV--------LEPEEADKTIKVDQVR 92 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEE--------EeccCCCCCCCHHHHH
Confidence 35678899999999999999987642111100 0000000011111000 00000 0112334433
Q ss_pred HHHHHH----hCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchh-hhhcc-CCcceEeCCCCCHHHHHH
Q 048507 285 EELKKK----LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQE-VADIM-GTASAYQLKKLSIDDCLA 358 (1448)
Q Consensus 285 ~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~-~~~~~~~l~~l~~~~a~~ 358 (1448)
+.+... ..+++-++|+|+++..+......+...+.....++.+|+||.+.+ +.... .-...+.+.+++.+++.+
T Consensus 93 ~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~ 172 (328)
T PRK05707 93 ELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQ 172 (328)
T ss_pred HHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHH
Confidence 322211 123444567899988777777777777766556777777776653 33322 223579999999999999
Q ss_pred HHhhcccCCchhhHHHHHHHHHhcCCchHHHHHH
Q 048507 359 VVAQHSLGSDKLLEEIGKKIVAKCDGLPLAAQTL 392 (1448)
Q Consensus 359 l~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 392 (1448)
.+....... .++.+..++..++|.|.....+
T Consensus 173 ~L~~~~~~~---~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 173 WLQQALPES---DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHhcccC---ChHHHHHHHHHcCCCHHHHHHH
Confidence 887653111 2345567889999999755544
No 154
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.42 E-value=0.0028 Score=76.22 Aligned_cols=158 Identities=12% Similarity=0.162 Sum_probs=92.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCcc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKK 295 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 295 (1448)
..+.|+|..|+|||.|++++++.......-..+++++. .++..++...+... ..+ .+++.+.+ .
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~-----~~~----~f~~~y~~-~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----KGD----SFRRRYRE-M 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----cHH----HHHHHhhc-C
Confidence 45899999999999999999984321111124556653 33444444433211 112 23333332 3
Q ss_pred EEEEEecCCCCChh-hHh-hhcccccC-CCCCcEEEEEcCch---------hhhhccCCcceEeCCCCCHHHHHHHHhhc
Q 048507 296 FLLVLDDVWNENYN-DWV-RLSRPFEA-GAPGSKIIVTTRNQ---------EVADIMGTASAYQLKKLSIDDCLAVVAQH 363 (1448)
Q Consensus 296 ~LlVlDdv~~~~~~-~~~-~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~l~~~~a~~l~~~~ 363 (1448)
=+|||||+...... .|. .+...+.. ...|..|||||+.. .+...+...-++++++.+.+.-.+++.++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 47889999654221 222 22222211 12355688888752 22334455568999999999999999887
Q ss_pred ccCCc-hhhHHHHHHHHHhcCCchHHH
Q 048507 364 SLGSD-KLLEEIGKKIVAKCDGLPLAA 389 (1448)
Q Consensus 364 ~~~~~-~~~~~~~~~i~~~~~g~PLal 389 (1448)
+.... ...++++.-|++.+.+..-.|
T Consensus 459 a~~r~l~l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 459 AVQEQLNAPPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHhcCCCCCHHHHHHHHHhccCCHHHH
Confidence 64333 444667777777777664443
No 155
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0033 Score=74.12 Aligned_cols=108 Identities=21% Similarity=0.271 Sum_probs=70.1
Q ss_pred ccCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHH
Q 048507 186 TEAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKT 265 (1448)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 265 (1448)
.+.+-+|.++-+++|.+.+.-....++.+.++++.+|++|||||.+|+.+++. ....|. -++++.-.|..++-..
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A--LnRkFf---RfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA--LNRKFF---RFSVGGMTDVAEIKGH 483 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH--hCCceE---EEeccccccHHhhccc
Confidence 45677999999999999997654435567799999999999999999999973 444442 2556655554433111
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCC
Q 048507 266 ILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWN 305 (1448)
Q Consensus 266 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 305 (1448)
- ...-..-+..+.+.++.. +...-|+.+|.|+.
T Consensus 484 R------RTYVGAMPGkiIq~LK~v-~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 484 R------RTYVGAMPGKIIQCLKKV-KTENPLILIDEVDK 516 (906)
T ss_pred c------eeeeccCChHHHHHHHhh-CCCCceEEeehhhh
Confidence 0 111122233444444433 34466888999854
No 156
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.36 E-value=7.1e-06 Score=95.27 Aligned_cols=123 Identities=24% Similarity=0.263 Sum_probs=84.0
Q ss_pred ccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEecC
Q 048507 1161 LKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEISD 1240 (1448)
Q Consensus 1161 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~~ 1240 (1448)
|...+++.| .+..+...+.-++.|+.|+|++|.+...- .+..|++|++|||++| .+..+|.-......|+.|.|++
T Consensus 166 L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYN-RLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred Hhhhhcchh-hHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhhhheeeeecc
Confidence 444444443 44555566777888888899888776632 5677889999999984 5677776443334589999988
Q ss_pred ccCccccccccCCCCcccceecc-cCCCccc---cCCCCCccceeeecccccc
Q 048507 1241 CNRLEALPKGLHNLKSLQELRIG-VELPSLE---EDGLPTNLHSLGIRGNMEI 1289 (1448)
Q Consensus 1241 ~~~~~~~p~~l~~l~~L~~L~l~-~~l~~~~---~~~~~~~L~~L~l~~n~~~ 1289 (1448)
|- ++.+ .++.+|.+|+.||++ |-+.... ..+.+..|+.|.|.||+..
T Consensus 242 N~-l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NA-LTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cH-HHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 65 3333 367888889999994 4333333 3344578899999999754
No 157
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.35 E-value=0.0018 Score=72.26 Aligned_cols=132 Identities=15% Similarity=0.118 Sum_probs=70.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccE
Q 048507 217 VIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKF 296 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 296 (1448)
-+.++|++|+|||++|+.++......+.....-|+.++. .+ ++..+.+.. .......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~-----~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT-----APKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc-----hHHHHHHHHHc---cCc
Confidence 578999999999999987765321112211112444432 11 222221111 12222233322 235
Q ss_pred EEEEecCCCC---------ChhhHhhhcccccCCCCCcEEEEEcCchhhhhcc--------CCcceEeCCCCCHHHHHHH
Q 048507 297 LLVLDDVWNE---------NYNDWVRLSRPFEAGAPGSKIIVTTRNQEVADIM--------GTASAYQLKKLSIDDCLAV 359 (1448)
Q Consensus 297 LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~--------~~~~~~~l~~l~~~~a~~l 359 (1448)
+|++|++... ....+..+...+.....+.+||+++......... .....+++++++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899999522 1122334444444444566777776543221111 1134689999999999988
Q ss_pred Hhhcc
Q 048507 360 VAQHS 364 (1448)
Q Consensus 360 ~~~~~ 364 (1448)
+....
T Consensus 204 ~~~~l 208 (284)
T TIGR02880 204 AGLML 208 (284)
T ss_pred HHHHH
Confidence 87654
No 158
>CHL00181 cbbX CbbX; Provisional
Probab=97.33 E-value=0.0035 Score=69.89 Aligned_cols=133 Identities=15% Similarity=0.109 Sum_probs=70.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCcc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKK 295 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 295 (1448)
..+.++|++|+|||++|+.++......+.-...-|+.++. .. +.....+.. .......+.+. ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~----l~~~~~g~~-----~~~~~~~l~~a---~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DD----LVGQYIGHT-----APKTKEVLKKA---MG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HH----HHHHHhccc-----hHHHHHHHHHc---cC
Confidence 4578999999999999999976321111111112444442 12 222221111 11122223322 23
Q ss_pred EEEEEecCCCC---------ChhhHhhhcccccCCCCCcEEEEEcCchhhhhcc--------CCcceEeCCCCCHHHHHH
Q 048507 296 FLLVLDDVWNE---------NYNDWVRLSRPFEAGAPGSKIIVTTRNQEVADIM--------GTASAYQLKKLSIDDCLA 358 (1448)
Q Consensus 296 ~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~--------~~~~~~~l~~l~~~~a~~ 358 (1448)
-+|++|++... .......+...+.....+.+||.++....+.... .....+.+++++.+|..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 48999999542 1112223344444444566777777543332111 123478999999999988
Q ss_pred HHhhcc
Q 048507 359 VVAQHS 364 (1448)
Q Consensus 359 l~~~~~ 364 (1448)
++...+
T Consensus 204 I~~~~l 209 (287)
T CHL00181 204 IAKIML 209 (287)
T ss_pred HHHHHH
Confidence 887664
No 159
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.32 E-value=0.0011 Score=83.28 Aligned_cols=156 Identities=20% Similarity=0.283 Sum_probs=85.7
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccc-cc---cceEEEEEeCCccCHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQ-DH---FDLKAWTCVSDDFDVKGLT 263 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~---f~~~~wv~~~~~~~~~~~~ 263 (1448)
++++||+.+++++++.|.... ..-+.++|++|+|||++|+.+++..... .. .++.+|.. +..
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~--- 251 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIG--- 251 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHH---
Confidence 468999999999999996632 2334689999999999999998632111 11 13444421 111
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHh-CCccEEEEEecCCCC--------ChhhHhhhcccccCCCCCcEEEEEcCch
Q 048507 264 KTILRSVTKQTIDDSDLNLLQEELKKKL-SQKKFLLVLDDVWNE--------NYNDWVRLSRPFEAGAPGSKIIVTTRNQ 334 (1448)
Q Consensus 264 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 334 (1448)
.++ .+.. -..+.+...+.+.+.+ +.++.+|++|+++.. ...+...+..++... ..-++|-+|...
T Consensus 252 -~ll---aG~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~ 325 (758)
T PRK11034 252 -SLL---AGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQ 325 (758)
T ss_pred -HHh---cccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChH
Confidence 111 1111 1112222222222222 355789999999531 112222233333322 234555555544
Q ss_pred hhhhcc-------CCcceEeCCCCCHHHHHHHHhhc
Q 048507 335 EVADIM-------GTASAYQLKKLSIDDCLAVVAQH 363 (1448)
Q Consensus 335 ~v~~~~-------~~~~~~~l~~l~~~~a~~l~~~~ 363 (1448)
+....+ .-...+.+++.+.+++.+++...
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 432111 12257899999999999998754
No 160
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.31 E-value=5.8e-05 Score=90.21 Aligned_cols=54 Identities=30% Similarity=0.327 Sum_probs=27.6
Q ss_pred ccEEEecCccCccccccccCCCCcccceec-ccCCCccccCCCCCccceeeecccc
Q 048507 1233 LTRLEISDCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGLPTNLHSLGIRGNM 1287 (1448)
Q Consensus 1233 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~~~~L~~L~l~~n~ 1287 (1448)
|+.+++++|+.. .++..+..+..+..|++ .+.+..+........+..+....|.
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNK 288 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhccccccccccccchHHHhccCcch
Confidence 566666665532 23344555566666666 4444444444444444444444443
No 161
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.30 E-value=0.0004 Score=68.27 Aligned_cols=69 Identities=22% Similarity=0.131 Sum_probs=40.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCC-ccE
Q 048507 218 IPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQ-KKF 296 (1448)
Q Consensus 218 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~ 296 (1448)
|.|+|++|+|||++|+.+++.. .. ..+.++.+...+ .........+...+.+.-+. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l--~~---~~~~i~~~~~~~---------------~~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL--GF---PFIEIDGSELIS---------------SYAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT--TS---EEEEEETTHHHT---------------SSTTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhc--cc---cccccccccccc---------------ccccccccccccccccccccccce
Confidence 5799999999999999999843 21 134444432210 01111222333333333333 389
Q ss_pred EEEEecCCCC
Q 048507 297 LLVLDDVWNE 306 (1448)
Q Consensus 297 LlVlDdv~~~ 306 (1448)
+|++||++..
T Consensus 61 vl~iDe~d~l 70 (132)
T PF00004_consen 61 VLFIDEIDKL 70 (132)
T ss_dssp EEEEETGGGT
T ss_pred eeeeccchhc
Confidence 9999999543
No 162
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.26 E-value=0.0066 Score=63.22 Aligned_cols=176 Identities=15% Similarity=0.198 Sum_probs=102.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCH----HHHHHHHHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDL----NLLQEELKK 289 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~----~~~~~~l~~ 289 (1448)
+.+++.++|.-|.|||.++++..... .+. +...-+--.+..+...+...++..+... ..... ++..+.+.+
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~--~~d-~~~~v~i~~~~~s~~~~~~ai~~~l~~~--p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASL--NED-QVAVVVIDKPTLSDATLLEAIVADLESQ--PKVNVNAVLEQIDRELAA 124 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhc--CCC-ceEEEEecCcchhHHHHHHHHHHHhccC--ccchhHHHHHHHHHHHHH
Confidence 45699999999999999999554311 111 1122222334456677778888777662 22233 333334444
Q ss_pred Hh-CCcc-EEEEEecCCCCChhhHhhhcccccCCCCC---cEEEEEcCch-------hhhhccCC-cce-EeCCCCCHHH
Q 048507 290 KL-SQKK-FLLVLDDVWNENYNDWVRLSRPFEAGAPG---SKIIVTTRNQ-------EVADIMGT-ASA-YQLKKLSIDD 355 (1448)
Q Consensus 290 ~l-~~~~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~g---s~ilvTtR~~-------~v~~~~~~-~~~-~~l~~l~~~~ 355 (1448)
.. ++++ ..+++|++.+......+.+.....-...+ -+|+..-..+ .+....+. ... |++.|++.++
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 33 4666 89999999777666666554332211111 1233322211 01111111 123 8999999998
Q ss_pred HHHHHhhcccCCc---h-hhHHHHHHHHHhcCCchHHHHHHHh
Q 048507 356 CLAVVAQHSLGSD---K-LLEEIGKKIVAKCDGLPLAAQTLGG 394 (1448)
Q Consensus 356 a~~l~~~~~~~~~---~-~~~~~~~~i~~~~~g~PLal~~~~~ 394 (1448)
...++..+..+.. + ..++....|.....|.|.+|..++.
T Consensus 205 t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 205 TGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 8888876643322 2 2346678899999999999987763
No 163
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.0082 Score=67.36 Aligned_cols=187 Identities=14% Similarity=0.103 Sum_probs=101.3
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccc-----eEEEEEeCCccCHHHHHHHHHHh
Q 048507 195 TEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFD-----LKAWTCVSDDFDVKGLTKTILRS 269 (1448)
Q Consensus 195 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-----~~~wv~~~~~~~~~~~~~~i~~~ 269 (1448)
...+++...+..+ .-.+.+.++|+.|+||+++|..+++..-...... +.-|+..+..+|+..+... -+.
T Consensus 11 ~~~~~l~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~-p~~ 84 (319)
T PRK08769 11 RAYDQTVAALDAG-----RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFI-PNR 84 (319)
T ss_pred HHHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecC-CCc
Confidence 3455666666433 2346788999999999999988875321111000 0001111111111000000 000
Q ss_pred ccCCCCCCCCHHHHHHHHHHHh-----CCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCc-hhhhhccC-C
Q 048507 270 VTKQTIDDSDLNLLQEELKKKL-----SQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRN-QEVADIMG-T 342 (1448)
Q Consensus 270 l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~~~-~ 342 (1448)
-+........++++.+. .+.+ .+++-++|+|+++......-..+...+.....++.+|++|.. ..+...+. -
T Consensus 85 ~~~k~~~~I~idqIR~l-~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSR 163 (319)
T PRK08769 85 TGDKLRTEIVIEQVREI-SQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSR 163 (319)
T ss_pred ccccccccccHHHHHHH-HHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhh
Confidence 00000001123333322 2222 245679999999776655666666666665567777776664 34443332 2
Q ss_pred cceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCchHHHHHHH
Q 048507 343 ASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGLPLAAQTLG 393 (1448)
Q Consensus 343 ~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 393 (1448)
...+.+.+++.+++.+.+.... . .++.+..++..++|.|+....+.
T Consensus 164 Cq~i~~~~~~~~~~~~~L~~~~--~---~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 164 CQRLEFKLPPAHEALAWLLAQG--V---SERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred heEeeCCCcCHHHHHHHHHHcC--C---ChHHHHHHHHHcCCCHHHHHHHh
Confidence 3578999999999998887642 1 13346678999999998665443
No 164
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.25 E-value=0.00055 Score=71.51 Aligned_cols=127 Identities=22% Similarity=0.227 Sum_probs=74.2
Q ss_pred ccccCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHH
Q 048507 184 LVTEAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLT 263 (1448)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 263 (1448)
.+.-+.++|.+.+++.+++-...-- .+....-|.+||..|+|||++++++.+...-++ .--|.+..
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k-------- 88 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSK-------- 88 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECH--------
Confidence 3445679999999998877554321 122345677899999999999999987332222 11122222
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCC-hhhHhhhcccccC----CCCCcEEEEEcCchhhh
Q 048507 264 KTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNEN-YNDWVRLSRPFEA----GAPGSKIIVTTRNQEVA 337 (1448)
Q Consensus 264 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-~~~~~~l~~~l~~----~~~gs~ilvTtR~~~v~ 337 (1448)
.+-.++..+.+.++. ...||+|.+||+.-+. ...+..++..+.. ...+..|..||-.++..
T Consensus 89 -----------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 89 -----------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred -----------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 122334444444442 3569999999995432 3445555554443 23444555566554443
No 165
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.22 E-value=0.00056 Score=80.03 Aligned_cols=157 Identities=17% Similarity=0.171 Sum_probs=87.0
Q ss_pred CeEeccchhHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLS-------NDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVK 260 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1448)
.++.|.+.+++++.+++.-.-.. +-...+.+.++|++|+|||++|+++++. ....| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch-----
Confidence 35689999999888877421100 1123456889999999999999999983 33333 1121111
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCC--------h--h----hHhhhcccccC--CCCC
Q 048507 261 GLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNEN--------Y--N----DWVRLSRPFEA--GAPG 324 (1448)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--------~--~----~~~~l~~~l~~--~~~g 324 (1448)
+ ..... ......+...+.......+.+|+||+++... . . ....+...+.. ...+
T Consensus 253 -L----~~k~~-----Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 253 -L----IQKYL-----GDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred -h----hhhhc-----chHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 1 11110 1111222233333334678899999974210 0 0 01112211211 1245
Q ss_pred cEEEEEcCchhhhhc-c----CCcceEeCCCCCHHHHHHHHhhcc
Q 048507 325 SKIIVTTRNQEVADI-M----GTASAYQLKKLSIDDCLAVVAQHS 364 (1448)
Q Consensus 325 s~ilvTtR~~~v~~~-~----~~~~~~~l~~l~~~~a~~l~~~~~ 364 (1448)
.+||+||...+.... + .....+++...+.++..++|..+.
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 678888875443322 1 123578899999999999998765
No 166
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.22 E-value=0.0029 Score=73.72 Aligned_cols=179 Identities=12% Similarity=0.110 Sum_probs=95.1
Q ss_pred cCeEeccchhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCH
Q 048507 187 EAQVYGRETEKKDVVELLLRDDL-------SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDV 259 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 259 (1448)
-.++.|.+..++++.+.+.-.-. -+-...+-+.++|++|+|||++|+++++. ....| +.+..
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f---i~i~~------ 212 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF---IRVVG------ 212 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEeh------
Confidence 34688999888888876642100 01124567889999999999999999974 22232 22211
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCC----------hhh----HhhhcccccC--CCC
Q 048507 260 KGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNEN----------YND----WVRLSRPFEA--GAP 323 (1448)
Q Consensus 260 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~~----~~~l~~~l~~--~~~ 323 (1448)
..+ ..... ......+.+.+.......+.+|++|+++... ... +..+...+.. ...
T Consensus 213 s~l----~~k~~-----ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~ 283 (398)
T PTZ00454 213 SEF----VQKYL-----GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 283 (398)
T ss_pred HHH----HHHhc-----chhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC
Confidence 111 11110 0111222333333345678999999975310 001 1122222221 224
Q ss_pred CcEEEEEcCchhhhhc-c----CCcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCc
Q 048507 324 GSKIIVTTRNQEVADI-M----GTASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGL 385 (1448)
Q Consensus 324 gs~ilvTtR~~~v~~~-~----~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~ 385 (1448)
+..||+||...+.... + .-...+++...+.++..++|..+.....-...-...++++.+.|.
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~ 350 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKI 350 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCC
Confidence 5677888875443221 1 123468888888888888887654322111111234566666654
No 167
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.17 E-value=0.0098 Score=76.66 Aligned_cols=165 Identities=17% Similarity=0.211 Sum_probs=84.9
Q ss_pred cCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHH
Q 048507 187 EAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTI 266 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 266 (1448)
+..++|.+..+++|.+++............++.++|++|+|||++|+.+++. ....|- -+.++...+..++..
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~~---~i~~~~~~~~~~i~g-- 391 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKFV---RFSLGGVRDEAEIRG-- 391 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCeE---EEeCCCcccHHHHcC--
Confidence 4568899999999988765321112223458999999999999999999973 333332 223333323322211
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhh----Hhhhccc--------ccCC-------CCCcEE
Q 048507 267 LRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYND----WVRLSRP--------FEAG-------APGSKI 327 (1448)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~----~~~l~~~--------l~~~-------~~gs~i 327 (1448)
. ...........+.+.+.+... .+-+|+||.++...... ...+... |.+. ..+.-+
T Consensus 392 --~--~~~~~g~~~g~i~~~l~~~~~-~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~ 466 (775)
T TIGR00763 392 --H--RRTYVGAMPGRIIQGLKKAKT-KNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIF 466 (775)
T ss_pred --C--CCceeCCCCchHHHHHHHhCc-CCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEE
Confidence 0 011111122333344444322 33478999995542110 1111111 1111 123334
Q ss_pred EEEcCchh-hhhcc-CCcceEeCCCCCHHHHHHHHhhc
Q 048507 328 IVTTRNQE-VADIM-GTASAYQLKKLSIDDCLAVVAQH 363 (1448)
Q Consensus 328 lvTtR~~~-v~~~~-~~~~~~~l~~l~~~~a~~l~~~~ 363 (1448)
|.||.... +...+ .-...+++.+++.++-.+++..+
T Consensus 467 I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~ 504 (775)
T TIGR00763 467 IATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKY 504 (775)
T ss_pred EEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHH
Confidence 44554322 11111 22257889999988887777654
No 168
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.15 E-value=0.0017 Score=64.86 Aligned_cols=88 Identities=18% Similarity=0.027 Sum_probs=47.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCc-
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQK- 294 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~- 294 (1448)
..+.|+|++|+||||+|+.++.... .....++++..+........... .................+.+.+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC--CCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 5789999999999999999997432 22233555555443322221111 111111111222222233333333333
Q ss_pred cEEEEEecCCCCC
Q 048507 295 KFLLVLDDVWNEN 307 (1448)
Q Consensus 295 ~~LlVlDdv~~~~ 307 (1448)
..+|++|+++...
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4899999997653
No 169
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.14 E-value=0.0029 Score=82.26 Aligned_cols=156 Identities=17% Similarity=0.207 Sum_probs=83.6
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc----ccceEEEEEeCCccCHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQD----HFDLKAWTCVSDDFDVKGLT 263 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~ 263 (1448)
++++||+.++.++++.|... ...-+.++|++|+|||++|+.++....... -....+|.- ++..+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l- 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGAL- 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHH-
Confidence 45899999999999999653 224456899999999999999887421110 012233321 11111
Q ss_pred HHHHHhccCCCCCCCCHH-HHHHHHHHHhC-CccEEEEEecCCCCC-------hhhHhhhcccccCCCCCcEEEEEcCch
Q 048507 264 KTILRSVTKQTIDDSDLN-LLQEELKKKLS-QKKFLLVLDDVWNEN-------YNDWVRLSRPFEAGAPGSKIIVTTRNQ 334 (1448)
Q Consensus 264 ~~i~~~l~~~~~~~~~~~-~~~~~l~~~l~-~~~~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~gs~ilvTtR~~ 334 (1448)
+. .... ..+.+ .+...+.+.-+ +++.+|++|+++... ..+...+..+.... ..-++|-+|...
T Consensus 241 ---~a---~~~~-~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~-g~i~~IgaTt~~ 312 (852)
T TIGR03346 241 ---IA---GAKY-RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR-GELHCIGATTLD 312 (852)
T ss_pred ---hh---cchh-hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-CceEEEEeCcHH
Confidence 10 0000 11222 22233333222 468999999995321 01122232232222 224555555544
Q ss_pred hhhhcc-------CCcceEeCCCCCHHHHHHHHhhc
Q 048507 335 EVADIM-------GTASAYQLKKLSIDDCLAVVAQH 363 (1448)
Q Consensus 335 ~v~~~~-------~~~~~~~l~~l~~~~a~~l~~~~ 363 (1448)
+....+ .-...+.++..+.++..+++...
T Consensus 313 e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 313 EYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred HHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 432111 12246788888999999888654
No 170
>CHL00176 ftsH cell division protein; Validated
Probab=97.12 E-value=0.0044 Score=76.54 Aligned_cols=177 Identities=14% Similarity=0.201 Sum_probs=96.9
Q ss_pred CeEeccchhHHHHHHHH---hcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHH
Q 048507 188 AQVYGRETEKKDVVELL---LRDDL---SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKG 261 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1448)
.+++|.++.++++.+.+ ..... -+....+-|.++|++|+|||++|++++... ... |+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~p-----~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EVP-----FFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC-----eeeccHH----H
Confidence 45788876666555543 22110 011224568999999999999999998732 222 2322211 1
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCC----------hhh----HhhhcccccC--CCCCc
Q 048507 262 LTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNEN----------YND----WVRLSRPFEA--GAPGS 325 (1448)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~~----~~~l~~~l~~--~~~gs 325 (1448)
+. .... ......+...+.+.....+.+|++|+++... ... +..+...+.. ...+.
T Consensus 252 f~----~~~~-----g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FV----EMFV-----GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HH----HHhh-----hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 11 1000 0112233444555556778999999995321 011 2223222222 23455
Q ss_pred EEEEEcCchhhhhc-c----CCcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCC
Q 048507 326 KIIVTTRNQEVADI-M----GTASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDG 384 (1448)
Q Consensus 326 ~ilvTtR~~~v~~~-~----~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g 384 (1448)
.||.||...+.... + .-...+.++..+.++-.++++.++.............+++.+.|
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G 386 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPG 386 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCC
Confidence 66667765433221 1 12356788888999988999887654332233445678888877
No 171
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.11 E-value=0.0027 Score=77.65 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=41.1
Q ss_pred cCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 187 EAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
-.+++|.++.++++..++..... .....+++.|+|++|+||||+++.++..
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999876432 2234468999999999999999999873
No 172
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.10 E-value=2.7e-05 Score=90.68 Aligned_cols=79 Identities=25% Similarity=0.296 Sum_probs=36.9
Q ss_pred cCceeEEEeCCCCccccCccccCCccceEEeccCccccccCh-hhhccccccEEeccCCchhhcccccccccCCCCeeee
Q 048507 594 LQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPE-SVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 672 (1448)
Q Consensus 594 l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~~L~~L~l 672 (1448)
++.|+.|+|++|+++..- .+..|.+|++|||++|.+..+|. +...+. |+.|++++| .+..+ .+|.+|++|+.||+
T Consensus 186 l~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN-~l~tL-~gie~LksL~~LDl 261 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN-ALTTL-RGIENLKSLYGLDL 261 (1096)
T ss_pred HHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc-HHHhh-hhHHhhhhhhccch
Confidence 344555555555554442 34445555555555555554442 222222 555555543 33333 23555555555555
Q ss_pred cCCC
Q 048507 673 SNTK 676 (1448)
Q Consensus 673 ~~~~ 676 (1448)
++|-
T Consensus 262 syNl 265 (1096)
T KOG1859|consen 262 SYNL 265 (1096)
T ss_pred hHhh
Confidence 5543
No 173
>PRK10536 hypothetical protein; Provisional
Probab=97.09 E-value=0.0025 Score=67.63 Aligned_cols=134 Identities=13% Similarity=0.142 Sum_probs=75.3
Q ss_pred eEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeC----C-----ccCH
Q 048507 189 QVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVS----D-----DFDV 259 (1448)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~----~-----~~~~ 259 (1448)
.+.+|......+..++... .+|.+.|.+|+|||+||.+++.+.-..+.|+.++.+.-. + +-+.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCH
Confidence 4678888899999988542 489999999999999999987643223456544433211 1 0122
Q ss_pred HHHH----HHHHHhccCCCCCCCCHHHHHH--------HHHHHhCCccE---EEEEecCCCCChhhHhhhcccccCCCCC
Q 048507 260 KGLT----KTILRSVTKQTIDDSDLNLLQE--------ELKKKLSQKKF---LLVLDDVWNENYNDWVRLSRPFEAGAPG 324 (1448)
Q Consensus 260 ~~~~----~~i~~~l~~~~~~~~~~~~~~~--------~l~~~l~~~~~---LlVlDdv~~~~~~~~~~l~~~l~~~~~g 324 (1448)
.+-+ +-+.+.+..- ......+.... .=..+++++.+ +||+|.+.+.+..+...+... .+.+
T Consensus 128 ~eK~~p~~~pi~D~L~~~-~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g~~ 203 (262)
T PRK10536 128 AEKFAPYFRPVYDVLVRR-LGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LGEN 203 (262)
T ss_pred HHHHHHHHHHHHHHHHHH-hChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---cCCC
Confidence 2211 2222221110 00001111100 00124456554 999999988766655555544 3578
Q ss_pred cEEEEEcCch
Q 048507 325 SKIIVTTRNQ 334 (1448)
Q Consensus 325 s~ilvTtR~~ 334 (1448)
|++|+|--..
T Consensus 204 sk~v~~GD~~ 213 (262)
T PRK10536 204 VTVIVNGDIT 213 (262)
T ss_pred CEEEEeCChh
Confidence 9999986544
No 174
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.07 E-value=0.0097 Score=68.20 Aligned_cols=162 Identities=10% Similarity=0.065 Sum_probs=90.7
Q ss_pred Eec-cchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHH
Q 048507 190 VYG-RETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILR 268 (1448)
Q Consensus 190 ~vG-r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 268 (1448)
++| -+..++.+...+..+. -.+...++|+.|+||||+|+.+++..-........ .+... ...+.+..
T Consensus 7 i~~~q~~~~~~L~~~~~~~~-----l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~C----~~c~~~~~ 74 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNR-----LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGTC----TNCKRIDS 74 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCcC----HHHHHHhc
Confidence 456 6667777777775432 35677899999999999999987532111100000 00000 00000000
Q ss_pred hccC------CCCCCCCHHHHHHHHHHH----hCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCch-hhh
Q 048507 269 SVTK------QTIDDSDLNLLQEELKKK----LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQ-EVA 337 (1448)
Q Consensus 269 ~l~~------~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~ 337 (1448)
.-.. ........+++.+.+... ..+.+-++|+|++..........+...+.....++.+|.+|.+. .+.
T Consensus 75 ~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll 154 (329)
T PRK08058 75 GNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQIL 154 (329)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCc
Confidence 0000 000112233333332221 23455689999997766666667777776666677777777653 333
Q ss_pred hcc-CCcceEeCCCCCHHHHHHHHhhc
Q 048507 338 DIM-GTASAYQLKKLSIDDCLAVVAQH 363 (1448)
Q Consensus 338 ~~~-~~~~~~~l~~l~~~~a~~l~~~~ 363 (1448)
... .-...+++.+++.++..+.+...
T Consensus 155 ~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 155 PTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 322 22367999999999998888764
No 175
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.011 Score=67.09 Aligned_cols=150 Identities=19% Similarity=0.252 Sum_probs=87.3
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh
Q 048507 212 DGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKL 291 (1448)
Q Consensus 212 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 291 (1448)
......+.+.|++|+|||+||..++. ...|..+--++...-..+ .+......+...+....
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~miG~---------------sEsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDMIGL---------------SESAKCAHIKKIFEDAY 595 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHccCc---------------cHHHHHHHHHHHHHHhh
Confidence 34567788999999999999999986 345554433322111000 01112233344455556
Q ss_pred CCccEEEEEecCCCCChhhHhhhccc---------------ccCCCCCcEEEEEcCchhhhhccCC----cceEeCCCCC
Q 048507 292 SQKKFLLVLDDVWNENYNDWVRLSRP---------------FEAGAPGSKIIVTTRNQEVADIMGT----ASAYQLKKLS 352 (1448)
Q Consensus 292 ~~~~~LlVlDdv~~~~~~~~~~l~~~---------------l~~~~~gs~ilvTtR~~~v~~~~~~----~~~~~l~~l~ 352 (1448)
+..--.||+||+.. ..+|..+... .|+.+..--|+-||....+...|+- ...++++.++
T Consensus 596 kS~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 67778999999933 2444433222 2232233334557777888887754 2578999998
Q ss_pred H-HHHHHHHhhcccCCchhhHHHHHHHHHhc
Q 048507 353 I-DDCLAVVAQHSLGSDKLLEEIGKKIVAKC 382 (1448)
Q Consensus 353 ~-~~a~~l~~~~~~~~~~~~~~~~~~i~~~~ 382 (1448)
. ++..+.+.....-.+...+..+.+...+|
T Consensus 674 ~~~~~~~vl~~~n~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELNIFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHccCCCcchhHHHHHHHhccc
Confidence 7 77777777654222333344455555555
No 176
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.06 E-value=0.003 Score=80.24 Aligned_cols=167 Identities=17% Similarity=0.188 Sum_probs=89.1
Q ss_pred ccCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHH
Q 048507 186 TEAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKT 265 (1448)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 265 (1448)
-+.+.+|.++-+++|.+++............++.++|++|+||||+|+.++.. ....|-. +..+...+..++...
T Consensus 320 l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~~~---i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 320 LDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKYVR---MALGGVRDEAEIRGH 394 (784)
T ss_pred hhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCEEE---EEcCCCCCHHHhccc
Confidence 35678999999999999887422112234568999999999999999999862 3333322 334443333222111
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhh----HhhhcccccC---------------CCCCcE
Q 048507 266 ILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYND----WVRLSRPFEA---------------GAPGSK 326 (1448)
Q Consensus 266 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~----~~~l~~~l~~---------------~~~gs~ 326 (1448)
-... .......+.+.+.+. ....-+++||.++...... ...+...+.+ .-.+.-
T Consensus 395 ~~~~------~g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 395 RRTY------IGSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred hhcc------CCCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 1001 111122333334332 2233478899996543211 1222222211 113444
Q ss_pred EEEEcCchhhhhcc-CCcceEeCCCCCHHHHHHHHhhcc
Q 048507 327 IIVTTRNQEVADIM-GTASAYQLKKLSIDDCLAVVAQHS 364 (1448)
Q Consensus 327 ilvTtR~~~v~~~~-~~~~~~~l~~l~~~~a~~l~~~~~ 364 (1448)
+|.|+....+...+ .-..++++.+++.++-.++...+.
T Consensus 468 ~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 468 FVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 44455443332221 223568889999888877776653
No 177
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.05 E-value=0.0038 Score=80.75 Aligned_cols=45 Identities=27% Similarity=0.414 Sum_probs=37.7
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
++++||+.++.++++.|.... ..-+.++|.+|+|||++|+.++..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999996542 345669999999999999999873
No 178
>PRK08116 hypothetical protein; Validated
Probab=97.03 E-value=0.002 Score=71.12 Aligned_cols=103 Identities=25% Similarity=0.280 Sum_probs=57.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCcc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKK 295 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 295 (1448)
..+.++|..|+|||.||.++++.. ...-..+++++ ..+++..+....... ...+..+ +.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l--~~~~~~v~~~~------~~~ll~~i~~~~~~~--~~~~~~~----~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL--IEKGVPVIFVN------FPQLLNRIKSTYKSS--GKEDENE----IIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEE------HHHHHHHHHHHHhcc--ccccHHH----HHHHhcCCC
Confidence 458899999999999999999843 22233456665 334444554443221 1112222 223334333
Q ss_pred EEEEEecCCCCChhhHhh--hcccccC-CCCCcEEEEEcCc
Q 048507 296 FLLVLDDVWNENYNDWVR--LSRPFEA-GAPGSKIIVTTRN 333 (1448)
Q Consensus 296 ~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~ilvTtR~ 333 (1448)
||||||+..+...+|.. +...+.. ...|..+||||..
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999995543344433 2222221 1245568898864
No 179
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0072 Score=65.80 Aligned_cols=178 Identities=13% Similarity=0.125 Sum_probs=97.8
Q ss_pred CeEeccchhHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLS-------NDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVK 260 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1448)
..+=|-++++++|.+.+.-.-.. +=..++-|.+||++|.|||-||++|++ +....| +.+...
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----IrvvgS---- 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVGS---- 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEeccH----
Confidence 35668899999998877432110 123467788999999999999999998 444444 333322
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC-CccEEEEEecCCCCC--------------hhhHhhhcccccCC--CC
Q 048507 261 GLTKTILRSVTKQTIDDSDLNLLQEELKKKLS-QKKFLLVLDDVWNEN--------------YNDWVRLSRPFEAG--AP 323 (1448)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~--------------~~~~~~l~~~l~~~--~~ 323 (1448)
++++..-++ -..+.+.+-+..+ ..+.+|.+|.++... +-.+-++...+..+ ..
T Consensus 220 ----ElVqKYiGE------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 220 ----ELVQKYIGE------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred ----HHHHHHhcc------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 223222111 1223333333333 458999999984310 01122333333332 34
Q ss_pred CcEEEEEcCchhhhhcc--C---CcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCch
Q 048507 324 GSKIIVTTRNQEVADIM--G---TASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGLP 386 (1448)
Q Consensus 324 gs~ilvTtR~~~v~~~~--~---~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~P 386 (1448)
..|||..|-..++.... . -...+++..-+.+.-.++|.-|+..-.-...--.+.|++.+.|.-
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~s 357 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFS 357 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCc
Confidence 56888877655543321 2 235678875555556677876653322111112344566666653
No 180
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.99 E-value=0.023 Score=63.80 Aligned_cols=176 Identities=12% Similarity=0.088 Sum_probs=101.8
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc-------ccceEEEEEeCCccCHHHHHHHHHH
Q 048507 196 EKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQD-------HFDLKAWTCVSDDFDVKGLTKTILR 268 (1448)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------~f~~~~wv~~~~~~~~~~~~~~i~~ 268 (1448)
..+++.+.+..+ .-.+.+.++|+.|+||+++|..++...-... .....-++..+..+|+..
T Consensus 11 ~~~~l~~~~~~~-----rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~------- 78 (319)
T PRK06090 11 VWQNWKAGLDAG-----RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHV------- 78 (319)
T ss_pred HHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEE-------
Confidence 345566665433 2356889999999999999999875321111 000001111111111110
Q ss_pred hccCCC-CCCCCHHHHHHHHHHHh-----CCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCc-hhhhhccC
Q 048507 269 SVTKQT-IDDSDLNLLQEELKKKL-----SQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRN-QEVADIMG 341 (1448)
Q Consensus 269 ~l~~~~-~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~~~ 341 (1448)
+.... .....++++.+ +.+.+ .+++-++|+|+++.........+...+.....++.+|.+|.+ ..+.....
T Consensus 79 -i~p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~ 156 (319)
T PRK06090 79 -IKPEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIV 156 (319)
T ss_pred -EecCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 00000 01123444432 22222 244568999999877767777777777766667777666655 34444332
Q ss_pred -CcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCchHHHHHH
Q 048507 342 -TASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGLPLAAQTL 392 (1448)
Q Consensus 342 -~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 392 (1448)
-...+.+.+++.+++.+.+...... .+..+++.++|.|+....+
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~~~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 157 SRCQQWVVTPPSTAQAMQWLKGQGIT-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hcceeEeCCCCCHHHHHHHHHHcCCc-------hHHHHHHHcCCCHHHHHHH
Confidence 2357899999999999988764211 2356789999999976554
No 181
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.97 E-value=0.0073 Score=73.85 Aligned_cols=186 Identities=13% Similarity=0.151 Sum_probs=96.7
Q ss_pred cCeEeccchhHHHHHHHHh---cCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHH
Q 048507 187 EAQVYGRETEKKDVVELLL---RDDL---SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVK 260 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1448)
-.+++|.+..++++.+++. ..+. .+....+-+.++|++|+|||++|++++... ... ++.++. .
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~----~ 122 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISG----S 122 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccH----H
Confidence 3467888877666655443 1100 012234558899999999999999998742 222 222221 1
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCC----------hhhHh----hhcccccC--CCCC
Q 048507 261 GLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNEN----------YNDWV----RLSRPFEA--GAPG 324 (1448)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~~~~----~l~~~l~~--~~~g 324 (1448)
++. .... ......+.+.+.......+.+|++|+++... ...+. .+...+.. ...+
T Consensus 123 ~~~----~~~~-----g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 123 DFV----EMFV-----GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred HHH----HHHh-----cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 111 1110 1112233344444445678899999994421 01111 12212211 2234
Q ss_pred cEEEEEcCchhhh-hcc----CCcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCc-hHHHHHH
Q 048507 325 SKIIVTTRNQEVA-DIM----GTASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGL-PLAAQTL 392 (1448)
Q Consensus 325 s~ilvTtR~~~v~-~~~----~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~ 392 (1448)
..||.||...... ..+ .-...+.++..+.++-.+++..+..............+++.+.|. +-.|..+
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHH
Confidence 4566666544321 111 223568888888888888888765433211222345778888773 4444433
No 182
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.97 E-value=0.00049 Score=85.59 Aligned_cols=128 Identities=20% Similarity=0.219 Sum_probs=83.1
Q ss_pred cceeeEEEeccCcccccchhh-hccccccEeeccccccCCCCCCchhhhhhhc-ccCceeEEEeCCCCccccCccccCCc
Q 048507 541 NLRHLSYIRGDYDGVQRFEKL-YDIQHLRTFLPVMLSNSLHGYLAPSILTELF-KLQRLRVFSLRGYRIDELPDSIGDLR 618 (1448)
Q Consensus 541 ~~r~l~~~~~~~~~~~~~~~~-~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~n~i~~lp~~i~~l~ 618 (1448)
+++|+.+.+...-......++ .-+|.|++|...+.. ...+-...++ ++++|+.||+|+++++.+ ..+++|+
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~------~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lk 195 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ------FDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLK 195 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCce------ecchhHHHHhhccCccceeecCCCCccCc-HHHhccc
Confidence 456665544332111111222 347888888543321 1112245566 899999999999999888 6788999
Q ss_pred cceEEeccCccccccC--hhhhccccccEEeccCCchhhcccc-------cccccCCCCeeeecCCC
Q 048507 619 YFRYLNLSGTEIRTLP--ESVNKLYNLHSLLLEDCDRLKKLCA-------DMGNLAKLHHLKNSNTK 676 (1448)
Q Consensus 619 ~L~~L~Ls~n~i~~lp--~~i~~L~~L~~L~L~~n~~~~~lp~-------~i~~L~~L~~L~l~~~~ 676 (1448)
+|++|.+.+-.+..-+ ..+.+|++|++||+|.... ...+. .-..|++||.||.|++.
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~-~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN-NDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeecccccc-ccchHHHHHHHHhcccCccccEEecCCcc
Confidence 9999999887776433 5678899999999987422 22221 11348899999998877
No 183
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.022 Score=64.10 Aligned_cols=175 Identities=11% Similarity=0.085 Sum_probs=101.6
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc--------ccceEEEEEeCCccCHHHHHHHHHH
Q 048507 197 KKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQD--------HFDLKAWTCVSDDFDVKGLTKTILR 268 (1448)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--------~f~~~~wv~~~~~~~~~~~~~~i~~ 268 (1448)
.+.+...+..+ .-.+...++|+.|+||+++|+.++...-... ..+.+-++..+..+|+..+
T Consensus 11 ~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (325)
T PRK06871 11 YQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL------ 79 (325)
T ss_pred HHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE------
Confidence 45566666433 2346788999999999999999875321111 1111111111112221110
Q ss_pred hccCCCCCCCCHHHHHHHHHHHh-----CCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCch-hhhhccC-
Q 048507 269 SVTKQTIDDSDLNLLQEELKKKL-----SQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQ-EVADIMG- 341 (1448)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~- 341 (1448)
.........++++.+ +.+.+ .+++-++|+|+++.........+...+.....++.+|++|.+. .+.....
T Consensus 80 --~p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 80 --EPIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred --ccccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh
Confidence 000001123444333 22222 2556688899998777677777777777666777777777654 4443322
Q ss_pred CcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCchHHH
Q 048507 342 TASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGLPLAA 389 (1448)
Q Consensus 342 ~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 389 (1448)
-...+.+.+++.+++.+.+...... . ...+...++.++|.|+.+
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~~~~-~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQSSA-E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHHhcc-C---hHHHHHHHHHcCCCHHHH
Confidence 2467999999999999888775421 1 223566788999999643
No 184
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.93 E-value=0.011 Score=70.36 Aligned_cols=168 Identities=12% Similarity=0.161 Sum_probs=88.5
Q ss_pred CeEeccchhHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHHcCcccc---cccceEEEEEeCCcc
Q 048507 188 AQVYGRETEKKDVVELLLRDDLS-------NDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQ---DHFDLKAWTCVSDDF 257 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~~ 257 (1448)
.++.|.+.+++++.+.+...-.. +-...+-+.++|++|+|||++|+++++..... .......|+.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 45778999999988876421100 11234568899999999999999999843211 01223444544432
Q ss_pred CHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH-hCCccEEEEEecCCCCC-------hhh-----HhhhcccccCC--C
Q 048507 258 DVKGLTKTILRSVTKQTIDDSDLNLLQEELKKK-LSQKKFLLVLDDVWNEN-------YND-----WVRLSRPFEAG--A 322 (1448)
Q Consensus 258 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~-------~~~-----~~~l~~~l~~~--~ 322 (1448)
+++...... .......+.+..++. -.+++.+|++|+++..- ..+ ..++...+... .
T Consensus 261 -------eLl~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 261 -------ELLNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred -------hhcccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 111111000 000111122222222 13578999999995320 011 11222222221 1
Q ss_pred CCcEEEEEcCchhhhh-cc----CCcceEeCCCCCHHHHHHHHhhccc
Q 048507 323 PGSKIIVTTRNQEVAD-IM----GTASAYQLKKLSIDDCLAVVAQHSL 365 (1448)
Q Consensus 323 ~gs~ilvTtR~~~v~~-~~----~~~~~~~l~~l~~~~a~~l~~~~~~ 365 (1448)
.+..||.||-..+... .+ .-...++++..+.++..++|..+..
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 3444555664433222 11 1234689999999999999988753
No 185
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.00053 Score=71.73 Aligned_cols=85 Identities=16% Similarity=0.073 Sum_probs=46.5
Q ss_pred CccccEEEEecCCCc--hhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCcc-ccCCCCCCCCCcc
Q 048507 1158 PESLKSLRVWDCPKL--ESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLV-SFPKGGLPGAKLT 1234 (1448)
Q Consensus 1158 ~~~L~~L~L~~~~~~--~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~-~lp~~~~~~~~L~ 1234 (1448)
.+.++.++|..|... ..+...+.++|.|++|+|+.|.+...|-..-..+.+|++|-|.+....- ........+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 346677777776544 2344456777777777777776554332111234567777776632111 1111223356666
Q ss_pred EEEecCcc
Q 048507 1235 RLEISDCN 1242 (1448)
Q Consensus 1235 ~L~l~~~~ 1242 (1448)
.|++|.|+
T Consensus 150 elHmS~N~ 157 (418)
T KOG2982|consen 150 ELHMSDNS 157 (418)
T ss_pred hhhhccch
Confidence 77777664
No 186
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.86 E-value=0.021 Score=63.21 Aligned_cols=55 Identities=20% Similarity=0.182 Sum_probs=35.0
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHH
Q 048507 195 TEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGL 262 (1448)
Q Consensus 195 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 262 (1448)
.-++++..++..+ +-|.+.|++|+|||++|+.+++ .... ..+++++....+..++
T Consensus 9 ~l~~~~l~~l~~g--------~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 9 RVTSRALRYLKSG--------YPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHHhcC--------CeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHH
Confidence 3445566665432 3466899999999999999986 2222 2345566555544444
No 187
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.85 E-value=0.014 Score=66.85 Aligned_cols=160 Identities=18% Similarity=0.210 Sum_probs=89.7
Q ss_pred cCeEeccchhHH-HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHH
Q 048507 187 EAQVYGRETEKK-DVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKT 265 (1448)
Q Consensus 187 ~~~~vGr~~~~~-~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 265 (1448)
+.-++|-..... .+...+.+. .+.....+.|||..|.|||.|++++.+. ..........+.++ ......+
T Consensus 87 dnFv~g~~N~~A~aa~~~va~~---~g~~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~----se~f~~~ 157 (408)
T COG0593 87 DNFVVGPSNRLAYAAAKAVAEN---PGGAYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLT----SEDFTND 157 (408)
T ss_pred hheeeCCchHHHHHHHHHHHhc---cCCcCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEecc----HHHHHHH
Confidence 344566554443 333333332 2225678999999999999999999983 33344322223222 2334444
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChh-hH-hhhcccccC-CCCCcEEEEEcCch--------
Q 048507 266 ILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYN-DW-VRLSRPFEA-GAPGSKIIVTTRNQ-------- 334 (1448)
Q Consensus 266 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~ilvTtR~~-------- 334 (1448)
++..+.. .-.+.+++.. .-=++++||++..... .| +.+...|.. ...|-.||+|++..
T Consensus 158 ~v~a~~~---------~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~ 226 (408)
T COG0593 158 FVKALRD---------NEMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLE 226 (408)
T ss_pred HHHHHHh---------hhHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhcccc
Confidence 4444322 1123444444 3338899999653111 12 122222211 12344899999642
Q ss_pred -hhhhccCCcceEeCCCCCHHHHHHHHhhcccC
Q 048507 335 -EVADIMGTASAYQLKKLSIDDCLAVVAQHSLG 366 (1448)
Q Consensus 335 -~v~~~~~~~~~~~l~~l~~~~a~~l~~~~~~~ 366 (1448)
++...+...-.+++.+.+.+....++.+.+..
T Consensus 227 ~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~ 259 (408)
T COG0593 227 DRLRSRLEWGLVVEIEPPDDETRLAILRKKAED 259 (408)
T ss_pred HHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHh
Confidence 33344455678999999999999998886543
No 188
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.84 E-value=0.0019 Score=68.33 Aligned_cols=36 Identities=31% Similarity=0.336 Sum_probs=29.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEe
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCV 253 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 253 (1448)
-.++|+|..|+||||++..+.. .....|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 3567999999999999999987 46678888877754
No 189
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.80 E-value=0.0097 Score=67.75 Aligned_cols=179 Identities=13% Similarity=0.051 Sum_probs=103.5
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccc--------cccceEEEEEeCCccCHHHHHHHH
Q 048507 195 TEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQ--------DHFDLKAWTCVSDDFDVKGLTKTI 266 (1448)
Q Consensus 195 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------~~f~~~~wv~~~~~~~~~~~~~~i 266 (1448)
..-+++...+..+ .-.+...++|+.|+||+++|.+++...-.. +....+.++.....+|+..+
T Consensus 9 ~~~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i---- 79 (334)
T PRK07993 9 PDYEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL---- 79 (334)
T ss_pred HHHHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE----
Confidence 3455666666443 235788899999999999999877532111 11111111111222221111
Q ss_pred HHhccCCCC-CCCCHHHHHHHHHHH----hCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCch-hhhhcc
Q 048507 267 LRSVTKQTI-DDSDLNLLQEELKKK----LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQ-EVADIM 340 (1448)
Q Consensus 267 ~~~l~~~~~-~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~ 340 (1448)
..+.. ....++++.+..... ..+++-++|+|+++.........+...+.....++.+|.+|.+. .+....
T Consensus 80 ----~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI 155 (334)
T PRK07993 80 ----TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATL 155 (334)
T ss_pred ----ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHH
Confidence 00000 112344443322221 12566799999997776666777777776666677777766654 444332
Q ss_pred -CCcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCchHHHH
Q 048507 341 -GTASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGLPLAAQ 390 (1448)
Q Consensus 341 -~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 390 (1448)
.-...+.+.+++.+++.+.+.... +. ..+.+..++..++|.|....
T Consensus 156 rSRCq~~~~~~~~~~~~~~~L~~~~-~~---~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 156 RSRCRLHYLAPPPEQYALTWLSREV-TM---SQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred HhccccccCCCCCHHHHHHHHHHcc-CC---CHHHHHHHHHHcCCCHHHHH
Confidence 223578999999999998886542 21 13446788999999996443
No 190
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.73 E-value=0.012 Score=59.46 Aligned_cols=136 Identities=15% Similarity=0.128 Sum_probs=77.0
Q ss_pred ccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccc------------------cccceEEEEEe
Q 048507 192 GRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQ------------------DHFDLKAWTCV 253 (1448)
Q Consensus 192 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~------------------~~f~~~~wv~~ 253 (1448)
|-++..+.+.+.+..+. -...+.++|+.|+||+++|..+++..--. +...-..|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 55667777777775442 34578899999999999999987632111 11222333322
Q ss_pred CCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh-----CCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEE
Q 048507 254 SDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKL-----SQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKII 328 (1448)
Q Consensus 254 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 328 (1448)
.... .....+++. .+.+.+ .+++-++|+||++.........+...+.....++++|
T Consensus 76 ~~~~------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 76 DKKK------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTSS------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred cccc------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 2210 012233333 222222 2456689999998877778888888887777889998
Q ss_pred EEcCchh-hhhcc-CCcceEeCCCC
Q 048507 329 VTTRNQE-VADIM-GTASAYQLKKL 351 (1448)
Q Consensus 329 vTtR~~~-v~~~~-~~~~~~~l~~l 351 (1448)
++|++.. +.... .-...+.+.++
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE---
T ss_pred EEECChHHChHHHHhhceEEecCCC
Confidence 8888754 32222 22245555554
No 191
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.019 Score=66.73 Aligned_cols=99 Identities=17% Similarity=0.222 Sum_probs=64.9
Q ss_pred cCeEeccchhHHHHHHHHhcCCCC------CCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHH
Q 048507 187 EAQVYGRETEKKDVVELLLRDDLS------NDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVK 260 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1448)
-.++-|.+..++++.+++..-... +-...+-|.++|++|+|||.||++++.+. .-.| +.++..
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel--~vPf-----~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL--GVPF-----LSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc--CCce-----Eeecch----
Confidence 346778999998888877542110 11245778899999999999999999843 3233 333332
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCC
Q 048507 261 GLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWN 305 (1448)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 305 (1448)
+|+..+ .....+.+.+.+.+.....++++++|+++-
T Consensus 258 ----eivSGv-----SGESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ----EIVSGV-----SGESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ----hhhccc-----CcccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 233322 233445555666666677899999999954
No 192
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.005 Score=73.21 Aligned_cols=168 Identities=17% Similarity=0.250 Sum_probs=96.5
Q ss_pred cccCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHH
Q 048507 185 VTEAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTK 264 (1448)
Q Consensus 185 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 264 (1448)
..+.+-+|-++-+++|++.|.-......-..++++++|++|+|||.|++.+++ .....|- -++++.-.|..++-.
T Consensus 320 iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkfv---R~sLGGvrDEAEIRG 394 (782)
T COG0466 320 ILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFV---RISLGGVRDEAEIRG 394 (782)
T ss_pred HhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEE---EEecCccccHHHhcc
Confidence 34667899999999999999754322334568999999999999999999998 4455553 244555444433211
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChh----hHhhhcccccC--------------CCCCcE
Q 048507 265 TILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYN----DWVRLSRPFEA--------------GAPGSK 326 (1448)
Q Consensus 265 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~l~~--------------~~~gs~ 326 (1448)
. ....-..=+..+.+.+++. +.+.=+++||.++....+ --.++...+.+ ..-.--
T Consensus 395 H------RRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 395 H------RRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred c------cccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 0 0111122233444444443 455678999998543110 00111111111 011123
Q ss_pred EEEEcCch-h-h-hhccCCcceEeCCCCCHHHHHHHHhhcc
Q 048507 327 IIVTTRNQ-E-V-ADIMGTASAYQLKKLSIDDCLAVVAQHS 364 (1448)
Q Consensus 327 ilvTtR~~-~-v-~~~~~~~~~~~l~~l~~~~a~~l~~~~~ 364 (1448)
+.|||-+. + + +.-+.-..++++.+-+++|=.++-++|.
T Consensus 468 mFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 44555442 2 2 2223445789999999999888777664
No 193
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.66 E-value=0.028 Score=65.98 Aligned_cols=224 Identities=16% Similarity=0.157 Sum_probs=118.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccE
Q 048507 217 VIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKF 296 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 296 (1448)
++.|.|+-++||||+++.+...- ... .+++...+...-..-+.+ ....+.+.-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~--~~~---~iy~~~~d~~~~~~~l~d-----------------~~~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGL--LEE---IIYINFDDLRLDRIELLD-----------------LLRAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhC--Ccc---eEEEEecchhcchhhHHH-----------------HHHHHHHhhccCCc
Confidence 99999999999999997776532 222 444443322111111111 11122222222778
Q ss_pred EEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchhhh-----hcc-CCcceEeCCCCCHHHHHHHHhhcccCCchh
Q 048507 297 LLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQEVA-----DIM-GTASAYQLKKLSIDDCLAVVAQHSLGSDKL 370 (1448)
Q Consensus 297 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~-----~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~ 370 (1448)
.|+||.|... .+|......+.+.+.. +|++|+-+.... ..+ |-...+++.||+-.|...+-...... ..
T Consensus 97 yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~~~--~~ 171 (398)
T COG1373 97 YIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEIEP--SK 171 (398)
T ss_pred eEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhcccccch--hH
Confidence 9999999665 7788888888776655 888888775442 222 33457899999999987654310000 01
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHhhhccCCChhHHHHHHhccccCCCCcccchhhHHHHhhhcCChhhHHHHhhhcccCC
Q 048507 371 LEEIGKKIVAKCDGLPLAAQTLGGLLRGKCDRSDWEDLLSCKIWNLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPK 450 (1448)
Q Consensus 371 ~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp~ 450 (1448)
.. ..-+-.-..||.|-++..-...-+ .......+.......... ..=+..+++.+.+++...
T Consensus 172 ~~-~~f~~Yl~~GGfP~~v~~~~~~~~---~~~~~~~~~~~Di~~~~~-------------~~~~~~~k~i~~~l~~~~- 233 (398)
T COG1373 172 LE-LLFEKYLETGGFPESVKADLSEKK---LKEYLDTILKRDIIERGK-------------IENADLMKRILRFLASNI- 233 (398)
T ss_pred HH-HHHHHHHHhCCCcHHHhCcchhhH---HHHHHHHHHHHHHHHHcC-------------cccHHHHHHHHHHHHhhc-
Confidence 11 122233457899987755322111 011111222111100000 000134556666555543
Q ss_pred CceeCHHHHHHHHHHcCCCcCCCCCCChHHHHHHHHHHHHhCCccc
Q 048507 451 DYEFEEEEIILLWCASGFLDHKESGNPNEDLGRKFFQELRGRSFFQ 496 (1448)
Q Consensus 451 ~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~sll~ 496 (1448)
+..+....+.+.+- |. ..++...|++.|.+.-++.
T Consensus 234 g~~~s~~~la~~l~--~i---------s~~Ti~~Yl~~le~~fll~ 268 (398)
T COG1373 234 GSPISYSSLARELK--GI---------SKDTIRKYLSYLEDAFLLF 268 (398)
T ss_pred CCccCHHHHHHHHh--cc---------chHHHHHHHHHHHHhhheE
Confidence 33456666655442 11 1456777888887777665
No 194
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.66 E-value=0.013 Score=75.02 Aligned_cols=120 Identities=17% Similarity=0.223 Sum_probs=69.7
Q ss_pred cCeEeccchhHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHH
Q 048507 187 EAQVYGRETEKKDVVELLLRDDL---SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLT 263 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 263 (1448)
...++|.+..++.+...+..... .......++.++|+.|+|||++|+.++... +...+.++.+.-.+...
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~~-- 525 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKHT-- 525 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhccc--
Confidence 45688999999999988864211 012234568899999999999999998732 23345555544222111
Q ss_pred HHHHHhccCCC--CCCCCHHHHHHHHHHHhCCc-cEEEEEecCCCCChhhHhhhccccc
Q 048507 264 KTILRSVTKQT--IDDSDLNLLQEELKKKLSQK-KFLLVLDDVWNENYNDWVRLSRPFE 319 (1448)
Q Consensus 264 ~~i~~~l~~~~--~~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~~~~~~~~l~~~l~ 319 (1448)
+...++... ........+.+ .++.+ .-+|+||+++..+.+.+..+...+.
T Consensus 526 --~~~lig~~~gyvg~~~~~~l~~----~~~~~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 526 --VSRLIGAPPGYVGFEQGGLLTE----AVRKHPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred --HHHHhcCCCCCcccchhhHHHH----HHHhCCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 111122111 01111222333 33333 4599999998877666666665554
No 195
>PRK04296 thymidine kinase; Provisional
Probab=96.66 E-value=0.0034 Score=65.54 Aligned_cols=113 Identities=12% Similarity=0.006 Sum_probs=64.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCC--CCCHHHHHHHHHHHhCC
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTID--DSDLNLLQEELKKKLSQ 293 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 293 (1448)
.++.|+|..|.||||+|..++.. ...+-..++.+. ..++.......++++++..... ....+++.+.+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 57889999999999999888863 323333344442 1112222233455555432211 2334455555554 233
Q ss_pred ccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchh
Q 048507 294 KKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQE 335 (1448)
Q Consensus 294 ~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 335 (1448)
+.-+||+|.+..-+.++..++...+. ..|..|++|.++.+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 44589999995543332333433332 35788999998754
No 196
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.63 E-value=0.0052 Score=72.50 Aligned_cols=186 Identities=16% Similarity=0.194 Sum_probs=110.6
Q ss_pred eEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHH
Q 048507 189 QVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILR 268 (1448)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 268 (1448)
++||.+.-...+..++.... -...-...|+-|+||||+|+.++...-.... ........-...++|-.
T Consensus 17 evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 17 DVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEINE 84 (515)
T ss_pred HhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhhc
Confidence 46999999999999996542 2355667899999999999998863211110 00111111111122222
Q ss_pred hccC-----CCCCCCCHHHHHHHHHHHh----CCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCch-hhhh
Q 048507 269 SVTK-----QTIDDSDLNLLQEELKKKL----SQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQ-EVAD 338 (1448)
Q Consensus 269 ~l~~-----~~~~~~~~~~~~~~l~~~l----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~ 338 (1448)
.-.. +......++++.+.+.+.. +++.-..|+|.|+......|..+..-+.........|..|.+. .+..
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 1000 0011223333322222221 3455589999998877788888888777665666666655543 3332
Q ss_pred c-cCCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCch
Q 048507 339 I-MGTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLP 386 (1448)
Q Consensus 339 ~-~~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~P 386 (1448)
. ..-.+.|.++.++.++-...+...+.... ...++....|++..+|..
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSL 214 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCCh
Confidence 2 23346799999999988888877654333 445566677777777744
No 197
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.63 E-value=0.014 Score=75.71 Aligned_cols=139 Identities=17% Similarity=0.184 Sum_probs=75.1
Q ss_pred cCeEeccchhHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHH
Q 048507 187 EAQVYGRETEKKDVVELLLRDDL---SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLT 263 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 263 (1448)
...++|.+..++.+...+..... ..+....++.++|+.|+|||++|+.+++.. ...-...+.++++.-.. ..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l--~~~~~~~i~id~se~~~-~~-- 641 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM--FDSDDAMVRIDMSEFME-KH-- 641 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh--hcCCCcEEEEEhHHhhh-hh--
Confidence 45789999999999988864321 012223578899999999999999998632 11222334455443211 11
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHhCCc-cEEEEEecCCCCChhhHhhhcccccCC-----------CCCcEEEEEc
Q 048507 264 KTILRSVTKQTIDDSDLNLLQEELKKKLSQK-KFLLVLDDVWNENYNDWVRLSRPFEAG-----------APGSKIIVTT 331 (1448)
Q Consensus 264 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTt 331 (1448)
....+.+........+. ...+.+.++.+ .-+|+||++...+...+..+...+..+ -..+.||+||
T Consensus 642 --~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TS 718 (857)
T PRK10865 642 --SVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTS 718 (857)
T ss_pred --hHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeC
Confidence 11122111111111111 01122223223 359999999776666666665544322 1233377777
Q ss_pred Cc
Q 048507 332 RN 333 (1448)
Q Consensus 332 R~ 333 (1448)
..
T Consensus 719 N~ 720 (857)
T PRK10865 719 NL 720 (857)
T ss_pred Cc
Confidence 64
No 198
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.0051 Score=75.54 Aligned_cols=126 Identities=14% Similarity=0.207 Sum_probs=74.7
Q ss_pred cCeEeccchhHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHH
Q 048507 187 EAQVYGRETEKKDVVELLLRDDL---SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLT 263 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 263 (1448)
...++|.+..++.+.+++..... +......+....|+.|||||.||++++.. .-+.=+..+-++.|.-- -
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~DMSEy~-----E 562 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRIDMSEYM-----E 562 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeechHHHH-----H
Confidence 46789999999999999975432 12334567778999999999999998862 11111333444433321 1
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHhCCccE-EEEEecCCCCChhhHhhhcccccC
Q 048507 264 KTILRSVTKQTIDDSDLNLLQEELKKKLSQKKF-LLVLDDVWNENYNDWVRLSRPFEA 320 (1448)
Q Consensus 264 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~~~~~~~~l~~~l~~ 320 (1448)
+.-+..+-+..+..-..++ .-.+-+..+.++| +|.||.+...+.+-+.-+.+.|.+
T Consensus 563 kHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 563 KHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred HHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 1122233222222111111 1123344456777 888999988777766666666554
No 199
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.61 E-value=0.021 Score=57.89 Aligned_cols=44 Identities=20% Similarity=0.232 Sum_probs=36.4
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.++||-++.++++.-.-.++ +.+-+.|.||+|+||||-+..+++
T Consensus 27 ~dIVGNe~tv~rl~via~~g------nmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEG------NMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCceEeeCCCCCchhhHHHHHHH
Confidence 46899999999887766443 557788999999999999888876
No 200
>PRK08118 topology modulation protein; Reviewed
Probab=96.60 E-value=0.0011 Score=67.33 Aligned_cols=34 Identities=38% Similarity=0.637 Sum_probs=26.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCcccc-cccceEEE
Q 048507 217 VIPIIGMGGLGKTTLAQLVYNDKRVQ-DHFDLKAW 250 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~w 250 (1448)
.|.|+|++|+||||+|+.+++..... -+|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 57899999999999999999854333 45666666
No 201
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.57 E-value=0.00043 Score=85.96 Aligned_cols=111 Identities=23% Similarity=0.395 Sum_probs=54.7
Q ss_pred ccccceEEecccCCccc--cccccCccCCcceeeeccC-CCCcccC-----CCCCccccceeEecccCCCCccchhhccC
Q 048507 992 SCRLEYLELNECKGLVK--LPQSSLSLSSLREIEICGC-SSLVSFP-----EVALPAKLRIISINSCDALKWLPEAWMCD 1063 (1448)
Q Consensus 992 ~~~L~~L~L~~~~~l~~--lp~~~~~l~~L~~L~L~~c-~~l~~~~-----~~~~~~~L~~L~l~~~~~l~~lp~~~~~~ 1063 (1448)
.+.|+.|.+.+|..+.. +-.....++.|++|++++| ......+ ....+.+|+.|++++|..++...-.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 34555555555544443 2233445555566665552 2222111 12234556666666666544444333333
Q ss_pred CCCCcceEEEecCCCccccc---CCcCCcCccEEEEecCCCC
Q 048507 1064 FNSSLEILSIECCRSLTYIA---GVQLPPSLKRLYIEFCDNI 1102 (1448)
Q Consensus 1064 ~~~~L~~L~l~~c~~l~~~~---~~~~~~~L~~L~l~~~~~l 1102 (1448)
.+++|+.|.+.+|..++... ....+++|++|++++|..+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 46666666666665543322 1233455666666666554
No 202
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.57 E-value=0.0075 Score=77.75 Aligned_cols=138 Identities=16% Similarity=0.185 Sum_probs=76.5
Q ss_pred cCeEeccchhHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHH
Q 048507 187 EAQVYGRETEKKDVVELLLRDDL---SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLT 263 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 263 (1448)
...++|.+..++.+.+.+..... .......++.++|+.|+|||.+|+.++.. ..+.....+-++++.-.+.
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~---- 638 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA---- 638 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh----
Confidence 46789999999999999864211 12234457899999999999999988763 2122222233333221111
Q ss_pred HHHHHhccCCCC--CCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccCCC-----------CCcEEEEE
Q 048507 264 KTILRSVTKQTI--DDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEAGA-----------PGSKIIVT 330 (1448)
Q Consensus 264 ~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvT 330 (1448)
..+.+-++.... .......+.+.+++ ...-+|+||++...+...+..+...+..+. ..+-||+|
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 111111221110 11111223334432 345699999998777666666655544331 44556667
Q ss_pred cCc
Q 048507 331 TRN 333 (1448)
Q Consensus 331 tR~ 333 (1448)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 653
No 203
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.55 E-value=0.017 Score=65.10 Aligned_cols=90 Identities=13% Similarity=0.137 Sum_probs=53.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCc-cCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDD-FDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLS 292 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 292 (1448)
..++|+++|++|+||||++..++.... ..=..+..++.... ....+-++...+.++.+.....+...+.+.+...-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~--~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH--HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 458999999999999999999986322 22123455554332 123333444444555443334566666666655432
Q ss_pred C-ccEEEEEecCCC
Q 048507 293 Q-KKFLLVLDDVWN 305 (1448)
Q Consensus 293 ~-~~~LlVlDdv~~ 305 (1448)
. +.=+|++|-...
T Consensus 318 ~~~~DvVLIDTaGR 331 (436)
T PRK11889 318 EARVDYILIDTAGK 331 (436)
T ss_pred ccCCCEEEEeCccc
Confidence 2 234788898744
No 204
>PRK08181 transposase; Validated
Probab=96.53 E-value=0.0079 Score=65.84 Aligned_cols=101 Identities=20% Similarity=0.134 Sum_probs=54.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCcc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKK 295 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 295 (1448)
.-+.++|++|+|||.||.++.+.. ......++|+++ .++...+.... .....+..... + .+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a--~~~g~~v~f~~~------~~L~~~l~~a~-----~~~~~~~~l~~----l-~~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLAL--IENGWRVLFTRT------TDLVQKLQVAR-----RELQLESAIAK----L-DKF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH--HHcCCceeeeeH------HHHHHHHHHHH-----hCCcHHHHHHH----H-hcC
Confidence 458999999999999999998732 222334566653 34444443321 11222222222 2 234
Q ss_pred EEEEEecCCCCChhhHh--hhcccccCCCCCcEEEEEcCch
Q 048507 296 FLLVLDDVWNENYNDWV--RLSRPFEAGAPGSKIIVTTRNQ 334 (1448)
Q Consensus 296 ~LlVlDdv~~~~~~~~~--~l~~~l~~~~~gs~ilvTtR~~ 334 (1448)
=|||+||+.......+. .+...+.....+..+||||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 49999999654332222 2222222211123588888753
No 205
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.52 E-value=0.11 Score=62.04 Aligned_cols=199 Identities=16% Similarity=0.184 Sum_probs=120.3
Q ss_pred cCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCc------ccccccceEEEEEeCCccCHH
Q 048507 187 EAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDK------RVQDHFDLKAWTCVSDDFDVK 260 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~------~~~~~f~~~~wv~~~~~~~~~ 260 (1448)
+..+-+|+.|..+|...+...-. .++..+++-|.|.+|.|||+.+..|.+.. .--..|+ .+.|+.-.-..+.
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~-~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~ 472 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFIS-DQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPR 472 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcC-CCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHH
Confidence 34566999999999998865433 23445699999999999999999998732 2223343 3455555566799
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC-----CccEEEEEecCCC---CChhhHhhhcccccCCCCCcEEEEEcC
Q 048507 261 GLTKTILRSVTKQTIDDSDLNLLQEELKKKLS-----QKKFLLVLDDVWN---ENYNDWVRLSRPFEAGAPGSKIIVTTR 332 (1448)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~ilvTtR 332 (1448)
+++..|..++.+... ......+.+..+.. .+..+|++|+++. ..++-+-.+.. |+ ..++++++|-+=
T Consensus 473 ~~Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fd-Wp-t~~~sKLvvi~I 547 (767)
T KOG1514|consen 473 EIYEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFD-WP-TLKNSKLVVIAI 547 (767)
T ss_pred HHHHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhc-CC-cCCCCceEEEEe
Confidence 999999999976543 34444455555543 3468899998832 22222222211 22 346777666432
Q ss_pred -c-hh---------hhhccCCcceEeCCCCCHHHHHHHHhhcccCCc----hhhHHHHHHHHHhcCCchHHHHHHH
Q 048507 333 -N-QE---------VADIMGTASAYQLKKLSIDDCLAVVAQHSLGSD----KLLEEIGKKIVAKCDGLPLAAQTLG 393 (1448)
Q Consensus 333 -~-~~---------v~~~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~g~PLal~~~~ 393 (1448)
+ .+ +...+| ...+...|-++++-.++...+..+.. ...+=++++|+...|-.-.|+.+.-
T Consensus 548 aNTmdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~ 622 (767)
T KOG1514|consen 548 ANTMDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICR 622 (767)
T ss_pred cccccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHH
Confidence 1 11 111111 13567788888888888777654442 2233345556555555555555543
No 206
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.50 E-value=0.053 Score=61.60 Aligned_cols=93 Identities=17% Similarity=0.222 Sum_probs=64.1
Q ss_pred CccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCc-hhhhhccC-CcceEeCCCCCHHHHHHHHhhcccCCchh
Q 048507 293 QKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRN-QEVADIMG-TASAYQLKKLSIDDCLAVVAQHSLGSDKL 370 (1448)
Q Consensus 293 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~~~-~~~~~~l~~l~~~~a~~l~~~~~~~~~~~ 370 (1448)
+++-++|+|+++.........+...+....+++.+|.+|.+ ..+..... -...+.+.+++.++..+.+.... ..+
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~--~~~- 207 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG--VAD- 207 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC--CCh-
Confidence 45568899999887777788887777776677766655554 44443332 23679999999999999887752 111
Q ss_pred hHHHHHHHHHhcCCchHHHHHH
Q 048507 371 LEEIGKKIVAKCDGLPLAAQTL 392 (1448)
Q Consensus 371 ~~~~~~~i~~~~~g~PLal~~~ 392 (1448)
...++..++|.|.....+
T Consensus 208 ----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 208 ----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ----HHHHHHHcCCCHHHHHHH
Confidence 223577889999755444
No 207
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.49 E-value=0.00034 Score=86.82 Aligned_cols=118 Identities=22% Similarity=0.326 Sum_probs=81.2
Q ss_pred ccccCCcceEeecCCCCccccchhhhhHHHhhhhhhccccceEEeccc-CCccccc----cccCccCCcceeeeccCCCC
Q 048507 956 LQDICSLKRLTIDSCPTLQSLVAEEEKDQQQQLCELSCRLEYLELNEC-KGLVKLP----QSSLSLSSLREIEICGCSSL 1030 (1448)
Q Consensus 956 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~-~~l~~lp----~~~~~l~~L~~L~L~~c~~l 1030 (1448)
...++.|+.|.+.+|..+.... +..+...++.|+.|++++| ......+ .....+.+|+.|++++|..+
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i 256 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDS-------LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV 256 (482)
T ss_pred HhhCchhhHhhhcccccCChhh-------HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc
Confidence 3447888999999888776532 2233455789999999883 3333222 24456788999999998765
Q ss_pred cccC--C-CCCccccceeEecccCCCCccchhhccCCCCCcceEEEecCCCcc
Q 048507 1031 VSFP--E-VALPAKLRIISINSCDALKWLPEAWMCDFNSSLEILSIECCRSLT 1080 (1448)
Q Consensus 1031 ~~~~--~-~~~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~L~~L~l~~c~~l~ 1080 (1448)
.+.. . ...+++|+.|.+.+|..++...-......+++|++|++++|..++
T Consensus 257 sd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 257 TDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred CchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence 4432 1 123779999998888876555444444568899999999998764
No 208
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.47 E-value=0.012 Score=76.78 Aligned_cols=138 Identities=17% Similarity=0.245 Sum_probs=77.7
Q ss_pred cCeEeccchhHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHH
Q 048507 187 EAQVYGRETEKKDVVELLLRDDL---SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLT 263 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 263 (1448)
...++|.+..++.+...+..... .......++.++|+.|+|||++|+.++.. ....-...+.++++.-......
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~~- 640 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHSV- 640 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccchH-
Confidence 35689999999999999975321 01123457889999999999999999873 2122223444555432221111
Q ss_pred HHHHHhccCCC--CCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccCC-----------CCCcEEEEE
Q 048507 264 KTILRSVTKQT--IDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEAG-----------APGSKIIVT 330 (1448)
Q Consensus 264 ~~i~~~l~~~~--~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvT 330 (1448)
.+-++... ........+...+++ ....+|+||++...+...+..+...+..+ -.++-||+|
T Consensus 641 ---~~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 641 ---ARLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred ---HHhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 11122111 011112223333332 22348999999887777777666655432 133447777
Q ss_pred cCc
Q 048507 331 TRN 333 (1448)
Q Consensus 331 tR~ 333 (1448)
|..
T Consensus 715 Sn~ 717 (852)
T TIGR03346 715 SNL 717 (852)
T ss_pred CCc
Confidence 763
No 209
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.47 E-value=0.0031 Score=65.26 Aligned_cols=131 Identities=19% Similarity=0.206 Sum_probs=64.9
Q ss_pred ccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCc--cCH-------HH-
Q 048507 192 GRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDD--FDV-------KG- 261 (1448)
Q Consensus 192 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~-------~~- 261 (1448)
.+..+-...+++|.. ..++.+.|++|.|||.||.+.+-+.-..+.|+.++++.-.-. .++ .+
T Consensus 4 p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 455666677777763 258999999999999999888765545688888887643211 110 00
Q ss_pred ---HHHHHHHhccCCCCCCCCHHHHHHHH------HHHhCCc---cEEEEEecCCCCChhhHhhhcccccCCCCCcEEEE
Q 048507 262 ---LTKTILRSVTKQTIDDSDLNLLQEEL------KKKLSQK---KFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIV 329 (1448)
Q Consensus 262 ---~~~~i~~~l~~~~~~~~~~~~~~~~l------~~~l~~~---~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv 329 (1448)
...-+.+.+..- ......+.+.+.= ...++++ ..+||+|++.+....++..+... .+.||||++
T Consensus 76 ~~p~~~p~~d~l~~~-~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~ 151 (205)
T PF02562_consen 76 MEPYLRPIYDALEEL-FGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIII 151 (205)
T ss_dssp --TTTHHHHHHHTTT-S-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEE
T ss_pred HHHHHHHHHHHHHHH-hChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEE
Confidence 111111111110 0112222222100 0123443 46999999988777777776554 356899999
Q ss_pred EcCch
Q 048507 330 TTRNQ 334 (1448)
Q Consensus 330 TtR~~ 334 (1448)
+--..
T Consensus 152 ~GD~~ 156 (205)
T PF02562_consen 152 TGDPS 156 (205)
T ss_dssp EE---
T ss_pred ecCce
Confidence 86543
No 210
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.46 E-value=0.088 Score=60.09 Aligned_cols=202 Identities=14% Similarity=0.146 Sum_probs=121.6
Q ss_pred cchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHH-HHHHcCcccccccceEEEEEeCCcc---CHHHHHHHHHH
Q 048507 193 RETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLA-QLVYNDKRVQDHFDLKAWTCVSDDF---DVKGLTKTILR 268 (1448)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~~~---~~~~~~~~i~~ 268 (1448)
|.+.++++..||.+.. -..|.|.|+-|.||+.|+ .++..+.+. +..++|.+-. +-....+.++.
T Consensus 1 R~e~~~~L~~wL~e~~------~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP------NTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCC------CeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHH
Confidence 6778999999997653 379999999999999999 777664322 5666654322 22334444444
Q ss_pred hcc-----------------------CCCCC-CCCHH-HHH-------HHHHH-------------------HhC---Cc
Q 048507 269 SVT-----------------------KQTID-DSDLN-LLQ-------EELKK-------------------KLS---QK 294 (1448)
Q Consensus 269 ~l~-----------------------~~~~~-~~~~~-~~~-------~~l~~-------------------~l~---~~ 294 (1448)
++| +.... ....+ ++. .++++ ++. .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 432 11111 11111 111 11221 011 12
Q ss_pred cEEEEEecCCCCC---------hhhHhhhcccccCCCCCcEEEEEcCchhhhhcc------CCcceEeCCCCCHHHHHHH
Q 048507 295 KFLLVLDDVWNEN---------YNDWVRLSRPFEAGAPGSKIIVTTRNQEVADIM------GTASAYQLKKLSIDDCLAV 359 (1448)
Q Consensus 295 ~~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~------~~~~~~~l~~l~~~~a~~l 359 (1448)
+=+||+|+.-... ..+|.... . ..+=.+||++|-+......+ .....+.|...+++.|..+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~L---v-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASL---V-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHH---H-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 5689999984321 12344321 1 12345788888876554433 2335788999999999999
Q ss_pred HhhcccCCc---------------------hhhHHHHHHHHHhcCCchHHHHHHHhhhccCCCh-hHHHHHHh
Q 048507 360 VAQHSLGSD---------------------KLLEEIGKKIVAKCDGLPLAAQTLGGLLRGKCDR-SDWEDLLS 410 (1448)
Q Consensus 360 ~~~~~~~~~---------------------~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~-~~w~~~~~ 410 (1448)
...+..... ....+.....++.+||==.-+..+++.++...++ +.-+++..
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 988764321 1234456778899999999999999999876443 33444443
No 211
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.46 E-value=0.0026 Score=71.25 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=42.6
Q ss_pred eEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 048507 189 QVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDK 239 (1448)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 239 (1448)
+++|.++.++++++++...........++++++|++|+||||+|+.+++..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 799999999999999977543224456899999999999999999998743
No 212
>PTZ00494 tuzin-like protein; Provisional
Probab=96.42 E-value=0.87 Score=51.73 Aligned_cols=168 Identities=13% Similarity=0.135 Sum_probs=103.0
Q ss_pred ccccCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHH
Q 048507 184 LVTEAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLT 263 (1448)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 263 (1448)
......+|.|++|-..+.+.|...+ ...++++.+.|.-|.||++|.+.....+.. ..++|++.... +-+
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~E---DtL 435 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGTE---DTL 435 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCCc---chH
Confidence 3445678999999999999887653 357899999999999999999988764332 36778887654 456
Q ss_pred HHHHHhccCCCCCC--CCHHHHHHHHHHH---hCCccEEEEEecCCCCC-hhhHhhhcccccCCCCCcEEEEEcCchhhh
Q 048507 264 KTILRSVTKQTIDD--SDLNLLQEELKKK---LSQKKFLLVLDDVWNEN-YNDWVRLSRPFEAGAPGSKIIVTTRNQEVA 337 (1448)
Q Consensus 264 ~~i~~~l~~~~~~~--~~~~~~~~~l~~~---l~~~~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 337 (1448)
+.+++.++....+. +-++-+.+..+.. ..++.-+||+-==...+ ...+.+.. .+.....-|+|++---.+.+.
T Consensus 436 rsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT 514 (664)
T PTZ00494 436 RSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALT 514 (664)
T ss_pred HHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhc
Confidence 78888888765543 2334444444332 33554455543211111 11122221 122333456777654333221
Q ss_pred hcc---CCcceEeCCCCCHHHHHHHHhhc
Q 048507 338 DIM---GTASAYQLKKLSIDDCLAVVAQH 363 (1448)
Q Consensus 338 ~~~---~~~~~~~l~~l~~~~a~~l~~~~ 363 (1448)
... .--.-|-+.+++.++|.++..+.
T Consensus 515 ~~n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 515 PLNVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred hhhccCccceeEecCCcCHHHHHHHHhcc
Confidence 111 11246889999999999987654
No 213
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.38 E-value=0.027 Score=58.19 Aligned_cols=179 Identities=17% Similarity=0.160 Sum_probs=92.9
Q ss_pred cCeEeccchhHH---HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHH
Q 048507 187 EAQVYGRETEKK---DVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLT 263 (1448)
Q Consensus 187 ~~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 263 (1448)
-+++||.++.+. -|++.|...+.=++-.++-|..+|++|.|||.+|+++++... -.| +.+.. .
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k--vp~-----l~vka----t--- 185 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK--VPL-----LLVKA----T--- 185 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC--Cce-----EEech----H---
Confidence 356889876664 345555443221334578899999999999999999998433 222 22211 1
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChh------------hHhhhcccccC--CCCCcEEEE
Q 048507 264 KTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYN------------DWVRLSRPFEA--GAPGSKIIV 329 (1448)
Q Consensus 264 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~------------~~~~l~~~l~~--~~~gs~ilv 329 (1448)
.-|.+.++ +...++.+...+.-+.-++++.+|.++-...+ ....+...+.. .+.|...|-
T Consensus 186 ~liGehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 186 ELIGEHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred HHHHHHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 11222221 11112222222222456899999987432110 11112222221 234555565
Q ss_pred EcCchhhhhcc---CCcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCc
Q 048507 330 TTRNQEVADIM---GTASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGL 385 (1448)
Q Consensus 330 TtR~~~v~~~~---~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~ 385 (1448)
.|-..+..... .-...++...-+.+|-.+++..++..-+-..+...+.++++.+|+
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~ 318 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGM 318 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCC
Confidence 56555443321 122456667777888888888776433322222245555555554
No 214
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.0022 Score=67.34 Aligned_cols=190 Identities=14% Similarity=0.103 Sum_probs=107.6
Q ss_pred hcccCCccceeeeccccccc--ccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEecCccCc-cccccccCCC
Q 048507 1178 RLDNNTSLEIIRIAYCENLK--ILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEISDCNRL-EALPKGLHNL 1254 (1448)
Q Consensus 1178 ~~~~l~~L~~L~Ls~n~~~~--~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~~~~~~-~~~p~~l~~l 1254 (1448)
.-..++.++.|||.+|.+.. .+-..+.++|.|+.|+|+.|+....|-.--.+..+|++|-|.+.... ......+..+
T Consensus 66 ~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 66 FGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL 145 (418)
T ss_pred HHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcc
Confidence 34567899999999988775 45556788999999999987655444322246679999999885532 2233456777
Q ss_pred Ccccceec-ccCCCccccC-----CCCCccceeeecccccccccccccCCccccCCCccEEEEecCCCcCcccccccccc
Q 048507 1255 KSLQELRI-GVELPSLEED-----GLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDMVSFPLEDKRL 1328 (1448)
Q Consensus 1255 ~~L~~L~l-~~~l~~~~~~-----~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~p~~~~~~ 1328 (1448)
+.++.|++ .|++..+..+ ...+.+..|..-+|....- ...-.--..++++..+-+..|. +.+.. .
T Consensus 146 P~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w--~~~~~l~r~Fpnv~sv~v~e~P--lK~~s-----~ 216 (418)
T KOG2982|consen 146 PKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLW--LNKNKLSRIFPNVNSVFVCEGP--LKTES-----S 216 (418)
T ss_pred hhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHH--HHHHhHHhhcccchheeeecCc--ccchh-----h
Confidence 78888877 4544443322 1234455555555532100 0000011234666666666541 22211 1
Q ss_pred CCCCCCCCCcCeEEEccCCCCcccc--ccccCCCCCCeEeecCCCCCCcCC
Q 048507 1329 GTALPLPASLTTLWIYNFPNLERLS--SSIVDLQNLTELRLLNCPKLKYFP 1377 (1448)
Q Consensus 1329 ~~~~~~~~~L~~L~l~~~~~l~~lp--~~~~~l~~L~~L~l~~c~~l~~lp 1377 (1448)
.+.+..++++-.|+|+. +++.+.. ..+.++++|..|.+++.|....+.
T Consensus 217 ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 217 EKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred cccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 22233445555666665 3344332 234566777777777766555443
No 215
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.35 E-value=0.043 Score=56.44 Aligned_cols=107 Identities=23% Similarity=0.247 Sum_probs=63.7
Q ss_pred cCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHH
Q 048507 187 EAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTI 266 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 266 (1448)
-..++|.+...+.+++--..-- .+-...-|.+||.-|+|||.|++++.+ .+....-. -|.+...
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~---------- 122 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE---------- 122 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH----------
Confidence 3468999988888876443211 112335578999999999999999987 33333322 2222221
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCC-ChhhHhhhcccccC
Q 048507 267 LRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNE-NYNDWVRLSRPFEA 320 (1448)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~ 320 (1448)
+-.++..+.+.++. ..+||+|..||+.-+ ....+..+...+..
T Consensus 123 ---------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG 166 (287)
T COG2607 123 ---------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEG 166 (287)
T ss_pred ---------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcC
Confidence 11122222233332 367999999999644 33456666666654
No 216
>PRK06921 hypothetical protein; Provisional
Probab=96.35 E-value=0.012 Score=64.96 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=27.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccc-cceEEEEEe
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDH-FDLKAWTCV 253 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~ 253 (1448)
...+.++|..|+|||.||.++++.. ... -..+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l--~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANEL--MRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--hhhcCceEEEEEH
Confidence 4678999999999999999999843 222 344566664
No 217
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.35 E-value=0.011 Score=66.26 Aligned_cols=122 Identities=16% Similarity=0.211 Sum_probs=68.6
Q ss_pred ccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhcc
Q 048507 192 GRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVT 271 (1448)
Q Consensus 192 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 271 (1448)
+|....+...+++.... .....+-+.++|..|+|||.||.++++... ...+ .+.++++. +++.++.....
T Consensus 135 ~~~~~~~~~~~fi~~~~--~~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~-~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYP--PGEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGV-SSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhh--ccCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCC-CEEEEEHH------HHHHHHHHHHh
Confidence 45555555556554322 112346789999999999999999998532 2223 35556543 44455544432
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhh--hccccc-CC-CCCcEEEEEcCc
Q 048507 272 KQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVR--LSRPFE-AG-APGSKIIVTTRN 333 (1448)
Q Consensus 272 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~--l~~~l~-~~-~~gs~ilvTtR~ 333 (1448)
. .... +.+.. + .+.=||||||+..+....|.. +...+. .. ..+-.+|+||--
T Consensus 205 ~-----~~~~---~~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 D-----GSVK---EKIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred c-----CcHH---HHHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1 1222 22222 2 234589999997666666753 433332 11 234567888763
No 218
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.34 E-value=0.019 Score=64.87 Aligned_cols=102 Identities=22% Similarity=0.208 Sum_probs=62.7
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccce-EEEEEeCCc-cCHHHHHHHHHHhccCC
Q 048507 196 EKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDL-KAWTCVSDD-FDVKGLTKTILRSVTKQ 273 (1448)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~ 273 (1448)
-..++++.+..- +....+.|+|.+|+|||||++.+++... ..+-+. ++|+.+.+. ..+.++.+.+...+...
T Consensus 119 ~~~RvID~l~Pi-----GkGQR~LIvG~pGtGKTTLl~~la~~i~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 119 LSMRVVDLVAPI-----GKGQRGLIVAPPRAGKTVLLQQIAAAVA-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hhHhhhhheeec-----CCCceEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 344577777532 1234568999999999999999887321 112233 466666554 46788888888877654
Q ss_pred CCCCCCHHH-----HHHHHHHHh--CCccEEEEEecC
Q 048507 274 TIDDSDLNL-----LQEELKKKL--SQKKFLLVLDDV 303 (1448)
Q Consensus 274 ~~~~~~~~~-----~~~~l~~~l--~~~~~LlVlDdv 303 (1448)
..+...... ....+.+++ ++++++||+|++
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 432222111 111222222 588999999999
No 219
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.34 E-value=0.012 Score=63.16 Aligned_cols=49 Identities=12% Similarity=0.153 Sum_probs=36.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHH
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTK 264 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 264 (1448)
+..+++.|+|++|+|||++|.+++.. ....-..++|++... ++...+.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 45689999999999999999998763 223346789999875 55544433
No 220
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.33 E-value=0.0049 Score=69.84 Aligned_cols=167 Identities=14% Similarity=0.128 Sum_probs=82.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccc---------cccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQ---------DHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQ 284 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 284 (1448)
-.+.+.++|+.|+||||+|+.++...-.. +....+.++.....+|+..+..+=.+.-.+.......++++.
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR 99 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVR 99 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHH
Confidence 34678899999999999999987632110 011011111111111111100000000000000112344444
Q ss_pred HHHHHHh-----CCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchh-hhhcc-CCcceEeCCCCCHHHHH
Q 048507 285 EELKKKL-----SQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQE-VADIM-GTASAYQLKKLSIDDCL 357 (1448)
Q Consensus 285 ~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~-~~~~~~~l~~l~~~~a~ 357 (1448)
+. .+.+ .+++-++|+|++...+...-..+...+.....++.+|++|.+.. +.... .-...+.+.+++.+++.
T Consensus 100 ~l-~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~ 178 (325)
T PRK08699 100 EI-IDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEAL 178 (325)
T ss_pred HH-HHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHH
Confidence 32 2222 13444556788866655554555544444334566777776643 33322 22357899999999999
Q ss_pred HHHhhcccCCchhhHHHHHHHHHhcCCchHH
Q 048507 358 AVVAQHSLGSDKLLEEIGKKIVAKCDGLPLA 388 (1448)
Q Consensus 358 ~l~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 388 (1448)
+.+..... .. .+ ..+..++|-|+.
T Consensus 179 ~~L~~~~~--~~--~~---~~l~~~~g~p~~ 202 (325)
T PRK08699 179 AYLRERGV--AE--PE---ERLAFHSGAPLF 202 (325)
T ss_pred HHHHhcCC--Cc--HH---HHHHHhCCChhh
Confidence 88876422 11 11 123567898854
No 221
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.30 E-value=0.0049 Score=61.40 Aligned_cols=104 Identities=22% Similarity=0.273 Sum_probs=75.6
Q ss_pred ccCceeEEEeCCCCccccCccccCCccceEEeccCccccccChhhh-ccccccEEeccCCchhhccc--ccccccCCCCe
Q 048507 593 KLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPESVN-KLYNLHSLLLEDCDRLKKLC--ADMGNLAKLHH 669 (1448)
Q Consensus 593 ~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp~~i~-~L~~L~~L~L~~n~~~~~lp--~~i~~L~~L~~ 669 (1448)
-+.....+||++|.+..++ .|..+..|.+|.|++|+|+.+-+.+. -+++|+.|.|.+|+ +.++- ..+..+++|++
T Consensus 40 ~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEY 117 (233)
T ss_pred cccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccce
Confidence 3456678899999988775 47788999999999999998866664 45679999999874 44432 23677889999
Q ss_pred eeecCCCCcccccc----ccCcccccccccceec
Q 048507 670 LKNSNTKSLEEMPV----GIGRLTSLQTLCNFVV 699 (1448)
Q Consensus 670 L~l~~~~~l~~~p~----~i~~L~~L~~L~~~~~ 699 (1448)
|.+-+|. ...-+. -+..+++|++|+...+
T Consensus 118 Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 118 LTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 9998887 444432 2667788888754433
No 222
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.29 E-value=0.0041 Score=63.84 Aligned_cols=100 Identities=24% Similarity=0.313 Sum_probs=50.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQK 294 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1448)
..-+.++|..|+|||.||.++.+... ...+ .+.|+++ .+++..+-. .. ........ +. .+. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~-~~g~-~v~f~~~------~~L~~~l~~----~~-~~~~~~~~---~~-~l~-~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAI-RKGY-SVLFITA------SDLLDELKQ----SR-SDGSYEEL---LK-RLK-R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHH-HTT---EEEEEH------HHHHHHHHC----CH-CCTTHCHH---HH-HHH-T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhc-cCCc-ceeEeec------Cceeccccc----cc-cccchhhh---cC-ccc-c
Confidence 35689999999999999999987432 2222 3566653 334444322 21 11222222 22 222 2
Q ss_pred cEEEEEecCCCCChhhHhh--hcccccC-CCCCcEEEEEcCc
Q 048507 295 KFLLVLDDVWNENYNDWVR--LSRPFEA-GAPGSKIIVTTRN 333 (1448)
Q Consensus 295 ~~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~ilvTtR~ 333 (1448)
.=||||||+......+|.. +...+.. ...+ .+||||..
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 3478899997654444433 1111111 1123 57888874
No 223
>PRK06526 transposase; Provisional
Probab=96.27 E-value=0.0054 Score=66.83 Aligned_cols=100 Identities=20% Similarity=0.155 Sum_probs=51.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCcc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKK 295 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 295 (1448)
.-+.|+|++|+|||+||.++..... ...+ .+.|+ +..++...+..... .... .+.+.+. .+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~-~~g~-~v~f~------t~~~l~~~l~~~~~-----~~~~---~~~l~~l--~~~ 160 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRAC-QAGH-RVLFA------TAAQWVARLAAAHH-----AGRL---QAELVKL--GRY 160 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHH-HCCC-chhhh------hHHHHHHHHHHHHh-----cCcH---HHHHHHh--ccC
Confidence 4688999999999999999886432 1222 23333 23344444432211 1111 1223322 234
Q ss_pred EEEEEecCCCCChhhHh--hhcccccC-CCCCcEEEEEcCch
Q 048507 296 FLLVLDDVWNENYNDWV--RLSRPFEA-GAPGSKIIVTTRNQ 334 (1448)
Q Consensus 296 ~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~ilvTtR~~ 334 (1448)
-+||+||+.......+. .+...+.. ...+ .+|+||...
T Consensus 161 dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~~ 201 (254)
T PRK06526 161 PLLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNKP 201 (254)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCCC
Confidence 58999999654322221 12222211 1224 388888753
No 224
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.26 E-value=0.014 Score=75.08 Aligned_cols=179 Identities=14% Similarity=0.107 Sum_probs=92.5
Q ss_pred CeEeccchhHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLS-------NDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVK 260 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1448)
.++.|.+..++++.+++...-.. +-...+.+.++|++|+|||++|+.+++. ....| +.++...
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~---i~i~~~~----- 247 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF---ISINGPE----- 247 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE---EEEecHH-----
Confidence 45789999999988877421000 1123466889999999999999999873 22222 2222111
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCCh-----------hhHhhhcccccCC-CCCcEEE
Q 048507 261 GLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENY-----------NDWVRLSRPFEAG-APGSKII 328 (1448)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-----------~~~~~l~~~l~~~-~~gs~il 328 (1448)
+.... .......+...+.......+.+|++|+++.... .....+...+... ..+..++
T Consensus 248 -----i~~~~-----~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 248 -----IMSKY-----YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred -----Hhccc-----ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 11110 011122233344444456678999999843210 0111222222211 1233344
Q ss_pred E-EcCchh-hhhccC----CcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCch
Q 048507 329 V-TTRNQE-VADIMG----TASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGLP 386 (1448)
Q Consensus 329 v-TtR~~~-v~~~~~----~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~P 386 (1448)
| ||.... +...+. -...+.+...+.++-.+++..+.....-........+++.+.|.-
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFV 381 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCC
Confidence 4 444322 211111 124577788888888888875543222111223566778887764
No 225
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.26 E-value=0.014 Score=62.90 Aligned_cols=103 Identities=16% Similarity=0.178 Sum_probs=55.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQK 294 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1448)
...+.++|.+|+|||+||.++++... ..-..++++++ .++...+-..... .....+. +.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~--~~g~~v~~it~------~~l~~~l~~~~~~---~~~~~~~----~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL--LRGKSVLIITV------ADIMSAMKDTFSN---SETSEEQ----LLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEH------HHHHHHHHHHHhh---ccccHHH----HHHHhc-c
Confidence 35788999999999999999998432 22234566643 3444443333211 1112222 223343 3
Q ss_pred cEEEEEecCCCCChhhHhh--hcccccC-CCCCcEEEEEcCc
Q 048507 295 KFLLVLDDVWNENYNDWVR--LSRPFEA-GAPGSKIIVTTRN 333 (1448)
Q Consensus 295 ~~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~ilvTtR~ 333 (1448)
.=+||+||+......+|.. +...+.. ....-.+||||-.
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4488899997665555653 2211111 1123347777753
No 226
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.25 E-value=0.019 Score=66.63 Aligned_cols=147 Identities=12% Similarity=0.094 Sum_probs=83.8
Q ss_pred eEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc-------------------ccceEE
Q 048507 189 QVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQD-------------------HFDLKA 249 (1448)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 249 (1448)
.++|-+....++..+..... ...+.+.++|++|+||||+|.++++...-.. ....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 35677778888888886432 1234589999999999999999887422111 112333
Q ss_pred EEEeCCccC---HHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccCCCCCcE
Q 048507 250 WTCVSDDFD---VKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSK 326 (1448)
Q Consensus 250 wv~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 326 (1448)
.++.+.... ..+..+++.+....... .++.-++++|+++....+.-..+...+......++
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 343333322 22223333322211110 25677999999977665555556655655667788
Q ss_pred EEEEcCc-hhhhhccC-CcceEeCCCCCHHH
Q 048507 327 IIVTTRN-QEVADIMG-TASAYQLKKLSIDD 355 (1448)
Q Consensus 327 ilvTtR~-~~v~~~~~-~~~~~~l~~l~~~~ 355 (1448)
+|++|.. ..+..... ....+++.+.+..+
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~~~~~~ 172 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKPPSRLE 172 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCCchHHH
Confidence 8888763 33333222 22456676633333
No 227
>PRK07261 topology modulation protein; Provisional
Probab=96.24 E-value=0.0097 Score=60.93 Aligned_cols=66 Identities=23% Similarity=0.316 Sum_probs=39.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCccc-ccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCcc
Q 048507 217 VIPIIGMGGLGKTTLAQLVYNDKRV-QDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKK 295 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 295 (1448)
.|.|+|++|+||||||+++...... .-+.|...|-... ...+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW---------------------QERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc---------------------ccCCHHHHHHHHHHHHhCCC
Confidence 4789999999999999998863221 1233444552211 12233445555555666555
Q ss_pred EEEEEecCCC
Q 048507 296 FLLVLDDVWN 305 (1448)
Q Consensus 296 ~LlVlDdv~~ 305 (1448)
.|+|+...
T Consensus 61 --wIidg~~~ 68 (171)
T PRK07261 61 --WIIDGNYS 68 (171)
T ss_pred --EEEcCcch
Confidence 67788743
No 228
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.24 E-value=0.015 Score=75.54 Aligned_cols=137 Identities=14% Similarity=0.192 Sum_probs=76.2
Q ss_pred cCeEeccchhHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHH
Q 048507 187 EAQVYGRETEKKDVVELLLRDDL---SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLT 263 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 263 (1448)
...++|.+..++.+...+..... ........+.++|+.|+|||+||+.+++. .-+.-...+-++.+.-.+...+
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~- 584 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTV- 584 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccH-
Confidence 46789999999999998863211 01223356678999999999999999862 2111123344444432221111
Q ss_pred HHHHHhccCCC--CCCCCHHHHHHHHHHHhCCcc-EEEEEecCCCCChhhHhhhcccccCC-----------CCCcEEEE
Q 048507 264 KTILRSVTKQT--IDDSDLNLLQEELKKKLSQKK-FLLVLDDVWNENYNDWVRLSRPFEAG-----------APGSKIIV 329 (1448)
Q Consensus 264 ~~i~~~l~~~~--~~~~~~~~~~~~l~~~l~~~~-~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilv 329 (1448)
.+-++.+. ........+ .+.++.++ .+|+||++...+...+..+...+..+ -..+-||+
T Consensus 585 ---~~l~g~~~gyvg~~~~~~l----~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~ 657 (821)
T CHL00095 585 ---SKLIGSPPGYVGYNEGGQL----TEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIM 657 (821)
T ss_pred ---HHhcCCCCcccCcCccchH----HHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEE
Confidence 11122111 111122223 33344444 58999999877766666666555432 13455666
Q ss_pred EcCc
Q 048507 330 TTRN 333 (1448)
Q Consensus 330 TtR~ 333 (1448)
||..
T Consensus 658 Tsn~ 661 (821)
T CHL00095 658 TSNL 661 (821)
T ss_pred eCCc
Confidence 7654
No 229
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.23 E-value=0.029 Score=72.27 Aligned_cols=179 Identities=14% Similarity=0.109 Sum_probs=94.2
Q ss_pred CeEeccchhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDL-------SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVK 260 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1448)
.++.|.+..++++.+.+.-.-. -+-...+-+.++|++|+|||++|+++++. ....| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH----
Confidence 4567888777777776542100 01123456889999999999999999984 23232 222211
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCC--------h----hhHhhhcccccC--CCCCcE
Q 048507 261 GLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNEN--------Y----NDWVRLSRPFEA--GAPGSK 326 (1448)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--------~----~~~~~l~~~l~~--~~~gs~ 326 (1448)
+++... -......+.+.+...-...+.+|++|+++... . ....++...+.. ...+.-
T Consensus 522 ----~l~~~~-----vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 ----EILSKW-----VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred ----HHhhcc-----cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 111111 11112223333444445668999999984310 0 011122222222 123445
Q ss_pred EEEEcCchhhhhc-c----CCcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCch
Q 048507 327 IIVTTRNQEVADI-M----GTASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGLP 386 (1448)
Q Consensus 327 ilvTtR~~~v~~~-~----~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~P 386 (1448)
||.||...+.... + .-...+.++..+.++-.++|..+..+..-........+++.+.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCC
Confidence 5666655443221 1 2235688888898888888876543322111112456777777643
No 230
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.22 E-value=0.0022 Score=79.85 Aligned_cols=76 Identities=26% Similarity=0.420 Sum_probs=41.0
Q ss_pred ccceEEeccCcccc-c-cChhh-hccccccEEeccCCchh-hcccccccccCCCCeeeecCCCCccccccccCccccccc
Q 048507 618 RYFRYLNLSGTEIR-T-LPESV-NKLYNLHSLLLEDCDRL-KKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQT 693 (1448)
Q Consensus 618 ~~L~~L~Ls~n~i~-~-lp~~i-~~L~~L~~L~L~~n~~~-~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~ 693 (1448)
.+|++||++|...- . =|..+ ..|+.|+.|.+++=... ..+-.-..++++|..||+|+++ +..+ .++++|++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence 45666666664321 1 12222 34566666666652111 1111224566777777777777 5555 56777777777
Q ss_pred cc
Q 048507 694 LC 695 (1448)
Q Consensus 694 L~ 695 (1448)
|.
T Consensus 200 L~ 201 (699)
T KOG3665|consen 200 LS 201 (699)
T ss_pred Hh
Confidence 73
No 231
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.22 E-value=0.019 Score=62.33 Aligned_cols=46 Identities=13% Similarity=0.100 Sum_probs=34.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHH
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKG 261 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1448)
+...++.|+|.+|+|||++|.+++... ...-..++|++.. .++...
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTE-GLSPER 66 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECC-CCCHHH
Confidence 456899999999999999999988632 2334678999887 455443
No 232
>PRK09183 transposase/IS protein; Provisional
Probab=96.19 E-value=0.011 Score=64.82 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
..+.|+|++|+|||+||..++..
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 46789999999999999999763
No 233
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.19 E-value=0.0021 Score=66.52 Aligned_cols=94 Identities=26% Similarity=0.296 Sum_probs=68.6
Q ss_pred hhhhcccCceeEEEeCCCCcc-----ccCccccCCccceEEeccCccc---c-ccCh-------hhhccccccEEeccCC
Q 048507 588 LTELFKLQRLRVFSLRGYRID-----ELPDSIGDLRYFRYLNLSGTEI---R-TLPE-------SVNKLYNLHSLLLEDC 651 (1448)
Q Consensus 588 ~~~~~~l~~L~~L~L~~n~i~-----~lp~~i~~l~~L~~L~Ls~n~i---~-~lp~-------~i~~L~~L~~L~L~~n 651 (1448)
...+.-+..+..+|||+|.|. .+-..|.+-.+|+.-+++.-.. . .+|+ .+-++++|+..+||.|
T Consensus 23 ~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 23 VEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 334446788899999999985 3556677788999998886422 1 4443 4567899999999998
Q ss_pred chhhccccc----ccccCCCCeeeecCCCCccccc
Q 048507 652 DRLKKLCAD----MGNLAKLHHLKNSNTKSLEEMP 682 (1448)
Q Consensus 652 ~~~~~lp~~----i~~L~~L~~L~l~~~~~l~~~p 682 (1448)
..-...|.. |++-+.|.||.+++|. ++.+.
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~a 136 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIA 136 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCC-CCccc
Confidence 665555543 5677899999999988 65554
No 234
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.023 Score=67.10 Aligned_cols=178 Identities=13% Similarity=0.115 Sum_probs=89.1
Q ss_pred CeEeccchhHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLS-------NDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVK 260 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1448)
.++-|-|+.+.++.+.+.-.... +-...+-|..+|++|+|||++|+++++. ....| +.+...
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne--~~~nF-----lsvkgp---- 502 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE--AGMNF-----LSVKGP---- 502 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh--hcCCe-----eeccCH----
Confidence 34455666555555444321100 1235678899999999999999999983 34444 333322
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCCh-----------hhHhhhcccccCCCCCcEEEE
Q 048507 261 GLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENY-----------NDWVRLSRPFEAGAPGSKIIV 329 (1448)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-----------~~~~~l~~~l~~~~~gs~ilv 329 (1448)
+++...- ......+.+.+++.-+-.+.+|.||.++.... ....++...+........|+|
T Consensus 503 ----EL~sk~v-----GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~V 573 (693)
T KOG0730|consen 503 ----ELFSKYV-----GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLV 573 (693)
T ss_pred ----HHHHHhc-----CchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEE
Confidence 1111111 11222333333333344568888888743210 112223333333222223333
Q ss_pred ---EcCchhhhhcc-C---CcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCc
Q 048507 330 ---TTRNQEVADIM-G---TASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGL 385 (1448)
Q Consensus 330 ---TtR~~~v~~~~-~---~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~ 385 (1448)
|-|...+-..+ . -...+.++.-+.+.-.++|+.++..-.-...-...+|+++..|.
T Consensus 574 iAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~ 636 (693)
T KOG0730|consen 574 IAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGY 636 (693)
T ss_pred EeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccC
Confidence 44554443322 2 23566677777777788998887544311111234455555544
No 235
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.15 E-value=0.014 Score=60.85 Aligned_cols=89 Identities=20% Similarity=0.145 Sum_probs=53.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCC-ccCHHHHHHHHHHhccCCCC---CCCCHHH-HHHHHHH
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSD-DFDVKGLTKTILRSVTKQTI---DDSDLNL-LQEELKK 289 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~-~~~~l~~ 289 (1448)
++++.++|+.|+||||.+.+++.....+ -..+..++... .....+-++..++.++.+.. ...+..+ +.+.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3799999999999999888887643333 33456666543 34566777788888775422 2223333 3334443
Q ss_pred HhCCccEEEEEecCCC
Q 048507 290 KLSQKKFLLVLDDVWN 305 (1448)
Q Consensus 290 ~l~~~~~LlVlDdv~~ 305 (1448)
.-.++.=+|++|-.-.
T Consensus 79 ~~~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAGR 94 (196)
T ss_dssp HHHTTSSEEEEEE-SS
T ss_pred HhhcCCCEEEEecCCc
Confidence 3223334888888743
No 236
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.12 E-value=0.022 Score=69.68 Aligned_cols=43 Identities=30% Similarity=0.380 Sum_probs=35.3
Q ss_pred eEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 189 QVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
+++|.+..++.+..++... ...-+.|+|.+|+|||++|+.+++
T Consensus 66 ~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 5899999999998877433 234567999999999999999975
No 237
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.11 E-value=0.034 Score=60.14 Aligned_cols=171 Identities=22% Similarity=0.254 Sum_probs=91.2
Q ss_pred eEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCc-ccccccceEEEEEeCCcc-----CHHHH
Q 048507 189 QVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDK-RVQDHFDLKAWTCVSDDF-----DVKGL 262 (1448)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-~~~~~f~~~~wv~~~~~~-----~~~~~ 262 (1448)
.++|-.++...+.+++...- -.+...-|.|+|+.|.|||+|...+..+. ++..+| +-|...+.. .+.++
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~--~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTI--LHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGI 99 (408)
T ss_pred ceeehHHHHHHHHHHHHHHH--HhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHH
Confidence 47898888888888886432 12234567899999999999987777641 233333 334443332 23334
Q ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHHhC------CccEEEEEecCCCCChhhHhh----hcccc-cCCCCCcEEEEEc
Q 048507 263 TKTILRSVTKQTIDDSDLNLLQEELKKKLS------QKKFLLVLDDVWNENYNDWVR----LSRPF-EAGAPGSKIIVTT 331 (1448)
Q Consensus 263 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~------~~~~LlVlDdv~~~~~~~~~~----l~~~l-~~~~~gs~ilvTt 331 (1448)
.+++..++...........+....+.+.|+ +-++++|+|.++-.....-.. +...- ....+-|-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 444444333222222222232333333332 236888888874321111111 11111 1134567788899
Q ss_pred Cch-------hhhhccCCcceEeCCCCCHHHHHHHHhhcc
Q 048507 332 RNQ-------EVADIMGTASAYQLKKLSIDDCLAVVAQHS 364 (1448)
Q Consensus 332 R~~-------~v~~~~~~~~~~~l~~l~~~~a~~l~~~~~ 364 (1448)
|-. .|-..+.-..++-++.+.-++...+++...
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 963 222223333456667777777777776643
No 238
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.07 E-value=0.032 Score=60.68 Aligned_cols=91 Identities=15% Similarity=0.069 Sum_probs=54.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCccccc----ccceEEEEEeCCccCHHHHHHHHHHhccCCC---------CCCCC
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKRVQD----HFDLKAWTCVSDDFDVKGLTKTILRSVTKQT---------IDDSD 279 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------~~~~~ 279 (1448)
+...++.|+|.+|+|||++|.+++......+ .=..++|++....++...+. .+.+...... ....+
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCC
Confidence 4568999999999999999999875321111 11567899887776654443 3333322110 02234
Q ss_pred HHHHHHHHHHHhC----CccEEEEEecCC
Q 048507 280 LNLLQEELKKKLS----QKKFLLVLDDVW 304 (1448)
Q Consensus 280 ~~~~~~~l~~~l~----~~~~LlVlDdv~ 304 (1448)
.+++...+.+... .+.-+||+|.+.
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 5555555554432 344589999983
No 239
>PRK12377 putative replication protein; Provisional
Probab=96.06 E-value=0.012 Score=63.63 Aligned_cols=101 Identities=20% Similarity=0.106 Sum_probs=54.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCcc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKK 295 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 295 (1448)
..+.++|.+|+|||+||.++++.. ......++++++. ++...+-..... ...... .+ +.+ .+.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l--~~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~---~l-~~l-~~~ 164 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRL--LAKGRSVIVVTVP------DVMSRLHESYDN----GQSGEK---FL-QEL-CKV 164 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEEEHH------HHHHHHHHHHhc----cchHHH---HH-HHh-cCC
Confidence 578999999999999999999843 2333345666543 344443333211 111111 22 222 345
Q ss_pred EEEEEecCCCCChhhHhh--hcccccCC-CCCcEEEEEcCc
Q 048507 296 FLLVLDDVWNENYNDWVR--LSRPFEAG-APGSKIIVTTRN 333 (1448)
Q Consensus 296 ~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~ 333 (1448)
-|||+||+.......|.. +...+... ...--+||||-.
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 699999995543344432 22222221 122236777753
No 240
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.05 E-value=0.025 Score=61.93 Aligned_cols=50 Identities=20% Similarity=0.129 Sum_probs=36.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCccccc----ccceEEEEEeCCccCHHHH
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKRVQD----HFDLKAWTCVSDDFDVKGL 262 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~ 262 (1448)
+...++.|+|.+|+|||++|.+++....... .-..++|++....++...+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl 70 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL 70 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH
Confidence 4568999999999999999999874322222 1367899998877665443
No 241
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.051 Score=66.52 Aligned_cols=182 Identities=13% Similarity=0.141 Sum_probs=100.4
Q ss_pred cCeEeccchhHH---HHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHH
Q 048507 187 EAQVYGRETEKK---DVVELLLRDDL---SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVK 260 (1448)
Q Consensus 187 ~~~~vGr~~~~~---~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1448)
-.++.|-++.++ ++++.|...+. -+..-++-+.++|++|+|||-||++++-... +-|++++..
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS---- 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS---- 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechH----
Confidence 356788775554 55555543221 0223467789999999999999999997433 333555443
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCC---------------hhhHhhhcccccCCCCCc
Q 048507 261 GLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNEN---------------YNDWVRLSRPFEAGAPGS 325 (1448)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---------------~~~~~~l~~~l~~~~~gs 325 (1448)
+.++.+... ....+.+.+...-...+.+|.+|+++... ...+.++...+..+....
T Consensus 379 ----EFvE~~~g~-----~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 379 ----EFVEMFVGV-----GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred ----HHHHHhccc-----chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 222222211 01112222222224567888888874321 112333433333333333
Q ss_pred EE--EEEcCchhhhhcc--C---CcceEeCCCCCHHHHHHHHhhcccCCc--hhhHHHHHHHHHhcCCchHHH
Q 048507 326 KI--IVTTRNQEVADIM--G---TASAYQLKKLSIDDCLAVVAQHSLGSD--KLLEEIGKKIVAKCDGLPLAA 389 (1448)
Q Consensus 326 ~i--lvTtR~~~v~~~~--~---~~~~~~l~~l~~~~a~~l~~~~~~~~~--~~~~~~~~~i~~~~~g~PLal 389 (1448)
.| +-+|...++.... . -...+.++.-+.....++|..|+.... ....+.++ |+...-|.+=|.
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 23 3355555543321 2 235678888888888899988875544 23444555 888888877443
No 242
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.04 E-value=0.022 Score=63.66 Aligned_cols=87 Identities=20% Similarity=0.158 Sum_probs=49.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccc-cccceEEEEEeCCc-cCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQ-DHFDLKAWTCVSDD-FDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKL 291 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 291 (1448)
..++++|+|++|+||||++..++.....+ +.+ .+..++.... ....+.+....+.++.......+...+.+.+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~- 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL- 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-
Confidence 46799999999999999999887633222 223 4555654432 1223333444444444333334555555555543
Q ss_pred CCccEEEEEecC
Q 048507 292 SQKKFLLVLDDV 303 (1448)
Q Consensus 292 ~~~~~LlVlDdv 303 (1448)
.+ .=+|++|..
T Consensus 271 ~~-~d~vliDt~ 281 (282)
T TIGR03499 271 RD-KDLILIDTA 281 (282)
T ss_pred cC-CCEEEEeCC
Confidence 33 347778864
No 243
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.03 E-value=0.015 Score=65.00 Aligned_cols=84 Identities=20% Similarity=0.103 Sum_probs=55.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCC-----CCCCCHHHHHHHH
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQT-----IDDSDLNLLQEEL 287 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 287 (1448)
+..+++-|+|++|+||||||.+++.. ....-..++|++..+.++.. .++.++... ....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 46689999999999999999998763 22334568899887766653 334443321 1233455555555
Q ss_pred HHHhC-CccEEEEEecC
Q 048507 288 KKKLS-QKKFLLVLDDV 303 (1448)
Q Consensus 288 ~~~l~-~~~~LlVlDdv 303 (1448)
...++ +..-+||+|.|
T Consensus 126 ~~li~s~~~~lIVIDSv 142 (325)
T cd00983 126 DSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHhccCCCEEEEcch
Confidence 55554 34669999997
No 244
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.00 E-value=0.024 Score=57.46 Aligned_cols=130 Identities=19% Similarity=0.153 Sum_probs=65.2
Q ss_pred EeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCc-ccccccceEEEEEeCCccCHHHHHHHHHH
Q 048507 190 VYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDK-RVQDHFDLKAWTCVSDDFDVKGLTKTILR 268 (1448)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 268 (1448)
+||....+.++.+.+.... ... .-|.|+|..|+||+.+|+.+++.- +..+. .+-|+++.- +...+..++..
T Consensus 1 liG~s~~m~~~~~~~~~~a---~~~-~pVlI~GE~GtGK~~lA~~IH~~s~r~~~p---fi~vnc~~~-~~~~~e~~LFG 72 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA---SSD-LPVLITGETGTGKELLARAIHNNSPRKNGP---FISVNCAAL-PEELLESELFG 72 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT---TST-S-EEEECSTTSSHHHHHHHHHHCSTTTTS----EEEEETTTS--HHHHHHHHHE
T ss_pred CEeCCHHHHHHHHHHHHHh---CCC-CCEEEEcCCCCcHHHHHHHHHHhhhcccCC---eEEEehhhh-hcchhhhhhhc
Confidence 3678888888888776532 122 445699999999999999999732 22233 344566543 33434344433
Q ss_pred hccCCCCCCCC-HHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccC------C-----CCCcEEEEEcCc
Q 048507 269 SVTKQTIDDSD-LNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEA------G-----APGSKIIVTTRN 333 (1448)
Q Consensus 269 ~l~~~~~~~~~-~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~------~-----~~gs~ilvTtR~ 333 (1448)
........... ... .+.+ ...=-|+||++.......-..+...+.. + ....|||.||..
T Consensus 73 ~~~~~~~~~~~~~~G---~l~~---A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 73 HEKGAFTGARSDKKG---LLEQ---ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp BCSSSSTTTSSEBEH---HHHH---TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred cccccccccccccCC---ceee---ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 32211111111 111 1221 2233678899966544333333333221 1 135788888874
No 245
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.98 E-value=0.017 Score=64.58 Aligned_cols=86 Identities=20% Similarity=0.088 Sum_probs=56.1
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCC-----CCCCCHHHHHHH
Q 048507 212 DGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQT-----IDDSDLNLLQEE 286 (1448)
Q Consensus 212 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~ 286 (1448)
-+..+++-|+|++|+||||||.+++... ...-..++|++..+.++.. .+++++... ......++....
T Consensus 52 lp~G~iteI~G~~GsGKTtLaL~~~~~~--~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~ 124 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEI 124 (321)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 3466899999999999999999877632 2333567899877765553 344443321 123345555555
Q ss_pred HHHHhC-CccEEEEEecCC
Q 048507 287 LKKKLS-QKKFLLVLDDVW 304 (1448)
Q Consensus 287 l~~~l~-~~~~LlVlDdv~ 304 (1448)
+....+ +..-+||+|.|-
T Consensus 125 ~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 125 AETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHHhhccCCcEEEEcchh
Confidence 555554 456799999983
No 246
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.94 E-value=0.02 Score=56.63 Aligned_cols=116 Identities=15% Similarity=0.070 Sum_probs=60.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEe---CCccCHHHHHHHHHHhc-----cCC-CCCCCCHH-----
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCV---SDDFDVKGLTKTILRSV-----TKQ-TIDDSDLN----- 281 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~~~~~~~~~~i~~~l-----~~~-~~~~~~~~----- 281 (1448)
..|-|++..|.||||+|...+-. ..++=..+.++.. ........+++.+ ..+ +.. .....+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~r--a~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALR--ALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 46888999999999999877652 2222223444332 2223333333333 111 000 00011111
Q ss_pred --HHHHHHHHHhCCcc-EEEEEecCCCC---ChhhHhhhcccccCCCCCcEEEEEcCch
Q 048507 282 --LLQEELKKKLSQKK-FLLVLDDVWNE---NYNDWVRLSRPFEAGAPGSKIIVTTRNQ 334 (1448)
Q Consensus 282 --~~~~~l~~~l~~~~-~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 334 (1448)
...+..++.+.... =|+|||++-.. ...+.+.+...+.....+..+|+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 12233344444444 49999998332 1223444555555555678999999985
No 247
>PRK04132 replication factor C small subunit; Provisional
Probab=95.94 E-value=0.1 Score=66.09 Aligned_cols=151 Identities=13% Similarity=0.087 Sum_probs=92.5
Q ss_pred CCCCcHHHHHHHHHcCccccccc-ceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEe
Q 048507 223 MGGLGKTTLAQLVYNDKRVQDHF-DLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLD 301 (1448)
Q Consensus 223 ~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlD 301 (1448)
|.++||||+|.+++++.- ...+ ..++-++++...... ..+++++.+..... .-..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l~-g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~--------------~~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARELF-GENWRHNFLELNASDERGIN-VIREKVKEFARTKP--------------IGGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhhh-cccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCC--------------cCCCCCEEEEEE
Confidence 668999999999998421 1122 235566776644443 23333332211100 001245799999
Q ss_pred cCCCCChhhHhhhcccccCCCCCcEEEEEcCch-hhhhcc-CCcceEeCCCCCHHHHHHHHhhcccC-CchhhHHHHHHH
Q 048507 302 DVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQ-EVADIM-GTASAYQLKKLSIDDCLAVVAQHSLG-SDKLLEEIGKKI 378 (1448)
Q Consensus 302 dv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~-~~~~~~~~~~~i 378 (1448)
+++..+......+...+......+++|.++.+. .+.... .-...+++.+++.++-...+.+.+.. .-...++....|
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~I 717 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAI 717 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 998877667777776666555567776665543 333322 22468999999999888777654322 112346678899
Q ss_pred HHhcCCchHHH
Q 048507 379 VAKCDGLPLAA 389 (1448)
Q Consensus 379 ~~~~~g~PLal 389 (1448)
++.++|.+-.+
T Consensus 718 a~~s~GDlR~A 728 (846)
T PRK04132 718 LYIAEGDMRRA 728 (846)
T ss_pred HHHcCCCHHHH
Confidence 99999988544
No 248
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.92 E-value=0.05 Score=60.69 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=23.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
..++.++|||++|+|||.+|++++.+
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999984
No 249
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.91 E-value=0.013 Score=60.74 Aligned_cols=36 Identities=33% Similarity=0.480 Sum_probs=28.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEE
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWT 251 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 251 (1448)
...+|.+.|+.|+||||+|+.++. +....+..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 456999999999999999999987 444455555555
No 250
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.88 E-value=0.021 Score=68.03 Aligned_cols=78 Identities=22% Similarity=0.284 Sum_probs=55.8
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh
Q 048507 212 DGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKL 291 (1448)
Q Consensus 212 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 291 (1448)
.+.-+++.++|++|+||||||.-++++.. | .++=+++++..+...+-..|...+....... .
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~-------------a 384 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLD-------------A 384 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhccccc-------------c
Confidence 35678999999999999999999987432 3 2666888888777777666666554332211 1
Q ss_pred CCccEEEEEecCCCCC
Q 048507 292 SQKKFLLVLDDVWNEN 307 (1448)
Q Consensus 292 ~~~~~LlVlDdv~~~~ 307 (1448)
.+++.-+|+|.++...
T Consensus 385 dsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGAP 400 (877)
T ss_pred CCCcceEEEecccCCc
Confidence 2678889999996654
No 251
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.86 E-value=0.024 Score=61.22 Aligned_cols=44 Identities=18% Similarity=0.089 Sum_probs=32.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccC
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFD 258 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 258 (1448)
+..+++.|.|.+|+||||+|.+++... ...-..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~--~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVET--AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCCCCH
Confidence 456899999999999999999988632 22234577887655443
No 252
>PRK09354 recA recombinase A; Provisional
Probab=95.86 E-value=0.023 Score=64.10 Aligned_cols=86 Identities=19% Similarity=0.078 Sum_probs=57.6
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCC-----CCCCCHHHHHHH
Q 048507 212 DGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQT-----IDDSDLNLLQEE 286 (1448)
Q Consensus 212 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~ 286 (1448)
-+.-+++-|+|++|+||||||.+++... ...-..++|++....++.. .++.++... ......++....
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~--~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i 129 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEI 129 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 3466899999999999999999887632 2334568899988877753 344444321 123345555555
Q ss_pred HHHHhC-CccEEEEEecCC
Q 048507 287 LKKKLS-QKKFLLVLDDVW 304 (1448)
Q Consensus 287 l~~~l~-~~~~LlVlDdv~ 304 (1448)
+...++ +..-+||+|.|-
T Consensus 130 ~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 130 ADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHHhhcCCCCEEEEeChh
Confidence 555554 346699999983
No 253
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.86 E-value=0.026 Score=57.80 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=29.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccC
Q 048507 217 VIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFD 258 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 258 (1448)
++.|+|.+|+||||+|..++... ...-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcchH
Confidence 36899999999999999998732 22335677887765543
No 254
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.00091 Score=69.36 Aligned_cols=102 Identities=21% Similarity=0.276 Sum_probs=51.5
Q ss_pred CceeEEEeCCCCccccCccccCCccceEEeccCccccccChhhhccccccEEeccCCchhhccc--ccccccCCCCeeee
Q 048507 595 QRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLC--ADMGNLAKLHHLKN 672 (1448)
Q Consensus 595 ~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp--~~i~~L~~L~~L~l 672 (1448)
.+.+-|++-++.|+.+. -+.+++.|++|.||-|+|+.| ..+..+++|+.|.|+.| .+..+- ..+.+|++|+.|.|
T Consensus 19 ~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhh
Confidence 33444555555554441 123455555555555555555 34555555555555554 222221 12456666666666
Q ss_pred cCCCCccccccc-----cCcccccccccceec
Q 048507 673 SNTKSLEEMPVG-----IGRLTSLQTLCNFVV 699 (1448)
Q Consensus 673 ~~~~~l~~~p~~-----i~~L~~L~~L~~~~~ 699 (1448)
..|...+.-+.. +.-|++|+.|++..+
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLDNVPV 127 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhccCccc
Confidence 666544444322 455666666655433
No 255
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.83 E-value=0.0042 Score=64.87 Aligned_cols=104 Identities=22% Similarity=0.225 Sum_probs=57.9
Q ss_pred ccCceeEEEeCCCCccccCccccCCccceEEeccCc--ccc-ccChhhhccccccEEeccCCchhhccccc---ccccCC
Q 048507 593 KLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGT--EIR-TLPESVNKLYNLHSLLLEDCDRLKKLCAD---MGNLAK 666 (1448)
Q Consensus 593 ~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n--~i~-~lp~~i~~L~~L~~L~L~~n~~~~~lp~~---i~~L~~ 666 (1448)
.+..|..|++.+..++.+ ..|..|++|++|++|.| .+. .++-...++++|++|+|++|. +.. +.. +..+.+
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTLRPLKELEN 117 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-ccccchhhhhcc
Confidence 444555555555555444 23445667777777777 444 455455555777777777753 322 222 455666
Q ss_pred CCeeeecCCCCcccccc----ccCcccccccccceecc
Q 048507 667 LHHLKNSNTKSLEEMPV----GIGRLTSLQTLCNFVVG 700 (1448)
Q Consensus 667 L~~L~l~~~~~l~~~p~----~i~~L~~L~~L~~~~~~ 700 (1448)
|..|++.+|. ...+-. .+.-+++|.+|+.+.+.
T Consensus 118 L~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 118 LKSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhhcccCC-ccccccHHHHHHHHhhhhccccccccC
Confidence 7777777766 333221 14556677777555443
No 256
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.81 E-value=0.036 Score=66.34 Aligned_cols=178 Identities=11% Similarity=0.053 Sum_probs=88.6
Q ss_pred CeEeccchhHHHHHHHHhc---C-CCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLR---D-DLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLT 263 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~---~-~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 263 (1448)
.++.|.+..++.+.+.... . ..-+-...+-|.++|++|+|||.+|++++.. ....| +-++.+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~-------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGK-------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHH--------
Confidence 3567776666555442211 0 0001134567889999999999999999983 22222 1122211
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCCh-------h-hH----hhhcccccCCCCCcEEEEEc
Q 048507 264 KTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENY-------N-DW----VRLSRPFEAGAPGSKIIVTT 331 (1448)
Q Consensus 264 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-------~-~~----~~l~~~l~~~~~gs~ilvTt 331 (1448)
+.... -......+.+.+...-...+++|++|+++..-. . .- ..+...+.....+.-||.||
T Consensus 295 --l~~~~-----vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 295 --LFGGI-----VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred --hcccc-----cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 11110 011122233333333345789999999953200 0 00 11111122223344455677
Q ss_pred Cchhh-hhcc----CCcceEeCCCCCHHHHHHHHhhcccCCch--hhHHHHHHHHHhcCCc
Q 048507 332 RNQEV-ADIM----GTASAYQLKKLSIDDCLAVVAQHSLGSDK--LLEEIGKKIVAKCDGL 385 (1448)
Q Consensus 332 R~~~v-~~~~----~~~~~~~l~~l~~~~a~~l~~~~~~~~~~--~~~~~~~~i~~~~~g~ 385 (1448)
...+. -..+ .-...+.++.-+.++-.++|..+...... ........+++.+.|.
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~Gf 428 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKF 428 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCC
Confidence 55432 1111 22356788888888888888876533221 1122345566666654
No 257
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.80 E-value=0.0037 Score=61.85 Aligned_cols=85 Identities=24% Similarity=0.184 Sum_probs=45.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEE
Q 048507 218 IPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFL 297 (1448)
Q Consensus 218 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 297 (1448)
|.++|++|+|||++|+.+++. ... ...-+.++...+..++....--.-+........ +.+.+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~~---~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~---l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LGR---PVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGP---LVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HTC---EEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-C---CCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hhc---ceEEEEeccccccccceeeeeeccccccccccc---ccccc-----cceeE
Confidence 679999999999999999873 211 233466777777665543221110000000000 00111 17889
Q ss_pred EEEecCCCCChhhHhhhc
Q 048507 298 LVLDDVWNENYNDWVRLS 315 (1448)
Q Consensus 298 lVlDdv~~~~~~~~~~l~ 315 (1448)
+|||++.......+..+.
T Consensus 69 l~lDEin~a~~~v~~~L~ 86 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLL 86 (139)
T ss_dssp EEESSCGG--HHHHHTTH
T ss_pred EEECCcccCCHHHHHHHH
Confidence 999999765444444443
No 258
>PRK06696 uridine kinase; Validated
Probab=95.79 E-value=0.011 Score=63.79 Aligned_cols=44 Identities=27% Similarity=0.258 Sum_probs=35.8
Q ss_pred ccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 192 GRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 192 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
.|++.+++|.+.+... ..+...+|+|.|.+|+||||+|+.++..
T Consensus 2 ~~~~~~~~la~~~~~~---~~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTL---NLTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHh---CCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 3667788888888653 2346789999999999999999999873
No 259
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.77 E-value=0.0041 Score=38.36 Aligned_cols=19 Identities=37% Similarity=0.850 Sum_probs=9.2
Q ss_pred ceEEeccCccccccChhhh
Q 048507 620 FRYLNLSGTEIRTLPESVN 638 (1448)
Q Consensus 620 L~~L~Ls~n~i~~lp~~i~ 638 (1448)
|++|||++|+|+.+|++|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4455555555544444443
No 260
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.73 E-value=0.036 Score=70.05 Aligned_cols=121 Identities=14% Similarity=0.147 Sum_probs=68.1
Q ss_pred cCeEeccchhHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHH
Q 048507 187 EAQVYGRETEKKDVVELLLRDDL---SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLT 263 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 263 (1448)
...++|.++.++.+.+++..... ........+.++|+.|+|||++|+.++... .. ..+.++++.-....
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~~---~~i~id~se~~~~~--- 528 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--GI---ELLRFDMSEYMERH--- 528 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--CC---CcEEeechhhcccc---
Confidence 35689999999999998874211 012234578899999999999999998732 22 23444544322111
Q ss_pred HHHHHhccCCCC--CCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhccccc
Q 048507 264 KTILRSVTKQTI--DDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFE 319 (1448)
Q Consensus 264 ~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~ 319 (1448)
.+.+-++.+.. .......+.+.++ +...-+|+||++...+.+.+..+...+.
T Consensus 529 -~~~~LiG~~~gyvg~~~~g~L~~~v~---~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 529 -TVSRLIGAPPGYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred -cHHHHcCCCCCcccccccchHHHHHH---hCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 11111222110 1111112222322 1234599999998776666666655443
No 261
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.71 E-value=0.0075 Score=57.99 Aligned_cols=21 Identities=48% Similarity=0.532 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048507 217 VIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
+|+|.|++|+||||+|+.+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 262
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.69 E-value=0.022 Score=59.55 Aligned_cols=204 Identities=16% Similarity=0.225 Sum_probs=111.2
Q ss_pred EeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcc----cccccceEEEEEeCCc---------
Q 048507 190 VYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKR----VQDHFDLKAWTCVSDD--------- 256 (1448)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~----~~~~f~~~~wv~~~~~--------- 256 (1448)
+.++++....+..... .++.+-..++|+.|.||-|.+..+.++.. .+-+-+..-|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 5566666666666543 23467788999999999998877765321 1112233444443332
Q ss_pred -c-----------CHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccE-EEEEecCCCCChhhHhhhcccccCCCC
Q 048507 257 -F-----------DVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKF-LLVLDDVWNENYNDWVRLSRPFEAGAP 323 (1448)
Q Consensus 257 -~-----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~~~~~~~~l~~~l~~~~~ 323 (1448)
+ .-+.+.+++++++..... +. .-..+.| ++|+-.++.-..+.-..+.+-......
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~q-----------ie-~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQ-----------IE-TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcc-----------hh-hccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 0 112233333333322110 00 0012344 667777755554555556666655667
Q ss_pred CcEEEEEcCch-hhhhccC-CcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCch-HHHHHHHhh-hcc
Q 048507 324 GSKIIVTTRNQ-EVADIMG-TASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLP-LAAQTLGGL-LRG 398 (1448)
Q Consensus 324 gs~ilvTtR~~-~v~~~~~-~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~P-Lal~~~~~~-l~~ 398 (1448)
.+|+|+..-+. .+-.... -.-.+++...+++|....+........ ....+.+.+|+++++|.- -|+-++-.. +.+
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n 236 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNN 236 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhcc
Confidence 78887744321 1111111 123578999999999888876553332 333788999999999864 344333211 111
Q ss_pred C--------CChhHHHHHHhc
Q 048507 399 K--------CDRSDWEDLLSC 411 (1448)
Q Consensus 399 ~--------~~~~~w~~~~~~ 411 (1448)
. -.+.+|+.+...
T Consensus 237 ~~~~a~~~~i~~~dWe~~i~e 257 (351)
T KOG2035|consen 237 EPFTANSQVIPKPDWEIYIQE 257 (351)
T ss_pred ccccccCCCCCCccHHHHHHH
Confidence 1 125678776654
No 263
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.043 Score=68.80 Aligned_cols=120 Identities=12% Similarity=0.152 Sum_probs=73.9
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCC--CCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSND--GGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKT 265 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 265 (1448)
..++|.++.+..|.+++........ ...-.+.+.|+.|+|||.||++++. .+-+..+..+-++.+. ...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSE------FQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhh------hhh-
Confidence 5678999999999999876543112 2467788999999999999999986 3444445555555443 222
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHHhCCccE-EEEEecCCCCChhhHhhhcccc
Q 048507 266 ILRSVTKQTIDDSDLNLLQEELKKKLSQKKF-LLVLDDVWNENYNDWVRLSRPF 318 (1448)
Q Consensus 266 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~~~~~~~~l~~~l 318 (1448)
+.+.++.. ..... .+....+-+.++.++| .|+||||...+......+...+
T Consensus 633 vskligsp-~gyvG-~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~l 684 (898)
T KOG1051|consen 633 VSKLIGSP-PGYVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLL 684 (898)
T ss_pred hhhccCCC-ccccc-chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHH
Confidence 22222322 11111 1112245556667775 7779999887766665444443
No 264
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.62 E-value=0.034 Score=63.56 Aligned_cols=89 Identities=17% Similarity=0.101 Sum_probs=52.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCC-ccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCC
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSD-DFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQ 293 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 293 (1448)
..+++++|+.|+||||++.+++.....+.....+..++... .....+-++...+.++.......+..++...+.+ +.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LRN 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hcC
Confidence 46899999999999999999986322121123455555332 2344556666666666544333333334444443 344
Q ss_pred ccEEEEEecCCC
Q 048507 294 KKFLLVLDDVWN 305 (1448)
Q Consensus 294 ~~~LlVlDdv~~ 305 (1448)
+ -+|++|..-.
T Consensus 216 ~-DlVLIDTaG~ 226 (374)
T PRK14722 216 K-HMVLIDTIGM 226 (374)
T ss_pred C-CEEEEcCCCC
Confidence 3 5667999844
No 265
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.59 E-value=0.015 Score=65.91 Aligned_cols=102 Identities=20% Similarity=0.229 Sum_probs=53.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCcc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKK 295 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 295 (1448)
..+.++|..|+|||.||.++++... ..-..++++++.. ++..+...-. . ...+... .+ +.+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~--~~g~~V~y~t~~~------l~~~l~~~~~-~--~~~~~~~---~~-~~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL--DRGKSVIYRTADE------LIEILREIRF-N--NDKELEE---VY-DLLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEEHHH------HHHHHHHHHh-c--cchhHHH---HH-HHhc-cC
Confidence 5689999999999999999998432 2223566666432 3333322111 0 1111111 12 2222 22
Q ss_pred EEEEEecCCCCChhhHhh--hcccccC-CCCCcEEEEEcCc
Q 048507 296 FLLVLDDVWNENYNDWVR--LSRPFEA-GAPGSKIIVTTRN 333 (1448)
Q Consensus 296 ~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~ilvTtR~ 333 (1448)
=|||+||+.......|.. +...+.. ...+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 489999996654333432 2222221 1224458888864
No 266
>PHA00729 NTP-binding motif containing protein
Probab=95.57 E-value=0.028 Score=58.99 Aligned_cols=25 Identities=48% Similarity=0.566 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
+...|.|+|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999873
No 267
>PHA02244 ATPase-like protein
Probab=95.56 E-value=0.062 Score=60.53 Aligned_cols=44 Identities=14% Similarity=0.244 Sum_probs=29.5
Q ss_pred cCeEeccchhH----HHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 187 EAQVYGRETEK----KDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 187 ~~~~vGr~~~~----~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
+..++|..... .++..++... .-|.|+|++|+|||++|+++++.
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~~--------~PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNAN--------IPVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHH
Confidence 34456654333 4555555332 24678999999999999999873
No 268
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.55 E-value=0.05 Score=61.36 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=42.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCcccc----cccceEEEEEeCCccCHHHHHHHHHHhccC
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKRVQ----DHFDLKAWTCVSDDFDVKGLTKTILRSVTK 272 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 272 (1448)
+..+++-|+|.+|+|||++|.+++-..... +.=..++|++....+++..+.+ +++.++.
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 456899999999999999998876422221 1124789999988888877654 5565543
No 269
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.08 Score=60.66 Aligned_cols=53 Identities=26% Similarity=0.297 Sum_probs=37.4
Q ss_pred CeEeccc---hhHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcc
Q 048507 188 AQVYGRE---TEKKDVVELLLRDDL---SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKR 240 (1448)
Q Consensus 188 ~~~vGr~---~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 240 (1448)
.++-|-| .|+++|++.|.+... -+..=++-|.++|++|.|||-||++|+-...
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~ 362 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG 362 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC
Confidence 3455655 567788888865321 0222356789999999999999999997543
No 270
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.53 E-value=0.038 Score=60.43 Aligned_cols=133 Identities=18% Similarity=0.275 Sum_probs=72.8
Q ss_pred ccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcC-cccccccceEEE----EEeCCcc---------
Q 048507 192 GRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYND-KRVQDHFDLKAW----TCVSDDF--------- 257 (1448)
Q Consensus 192 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~-~~~~~~f~~~~w----v~~~~~~--------- 257 (1448)
+|..+-.-..++|.. +.+..|.+.|.+|.|||.||.+..=. ...++.|..++- +.+++..
T Consensus 228 prn~eQ~~ALdlLld------~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEe 301 (436)
T COG1875 228 PRNAEQRVALDLLLD------DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEE 301 (436)
T ss_pred cccHHHHHHHHHhcC------CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhh
Confidence 466666666777754 36799999999999999998665422 233555554433 2233221
Q ss_pred CHHHHHHHHHHhccCC-CCCCCCHHHHHHHH-H---------HHhCCc---cEEEEEecCCCCChhhHhhhcccccCCCC
Q 048507 258 DVKGLTKTILRSVTKQ-TIDDSDLNLLQEEL-K---------KKLSQK---KFLLVLDDVWNENYNDWVRLSRPFEAGAP 323 (1448)
Q Consensus 258 ~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~l-~---------~~l~~~---~~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 323 (1448)
-+.-..+.|...+..- ..+... +...+.+ . .+.+++ +.+||+|.+.+-...+...+. ...+.
T Consensus 302 Km~PWmq~i~DnLE~L~~~~~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTil---tR~G~ 377 (436)
T COG1875 302 KMGPWMQAIFDNLEVLFSPNEPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTIL---TRAGE 377 (436)
T ss_pred hccchHHHHHhHHHHHhcccccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHH---HhccC
Confidence 1222233333222110 011111 2222222 1 122343 459999999887666665554 34568
Q ss_pred CcEEEEEcCch
Q 048507 324 GSKIIVTTRNQ 334 (1448)
Q Consensus 324 gs~ilvTtR~~ 334 (1448)
||||+.|--..
T Consensus 378 GsKIVl~gd~a 388 (436)
T COG1875 378 GSKIVLTGDPA 388 (436)
T ss_pred CCEEEEcCCHH
Confidence 99999886543
No 271
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.52 E-value=0.014 Score=59.24 Aligned_cols=78 Identities=17% Similarity=0.190 Sum_probs=43.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHh--ccCCCCCC-CCHHHHHHHHHHHhCCc
Q 048507 218 IPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRS--VTKQTIDD-SDLNLLQEELKKKLSQK 294 (1448)
Q Consensus 218 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~--l~~~~~~~-~~~~~~~~~l~~~l~~~ 294 (1448)
+.|.|.+|+|||++|.+++.. ....++++.-....+.. ..+.|.+. ........ .....+.+.+.+. + +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~-~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKEL-D-P 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-C
Confidence 578999999999999998763 22356667666655543 33332221 11221211 1223333444222 2 2
Q ss_pred cEEEEEecC
Q 048507 295 KFLLVLDDV 303 (1448)
Q Consensus 295 ~~LlVlDdv 303 (1448)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 337999997
No 272
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.11 Score=60.75 Aligned_cols=132 Identities=15% Similarity=0.216 Sum_probs=74.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQ 293 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 293 (1448)
...-|.+||++|+|||-||++|++. ....| +++... +++...+ ......+.+.+++.-..
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP----ELlNkYV---------GESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP----ELLNKYV---------GESERAVRQVFQRARAS 603 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH----HHHHHHh---------hhHHHHHHHHHHHhhcC
Confidence 3566889999999999999999994 33344 555543 2222211 11122333344444456
Q ss_pred ccEEEEEecCCCC-----Chhh------HhhhcccccC--CCCCcEEEEEcCchhhhh-cc-CC---cceEeCCCCCHHH
Q 048507 294 KKFLLVLDDVWNE-----NYND------WVRLSRPFEA--GAPGSKIIVTTRNQEVAD-IM-GT---ASAYQLKKLSIDD 355 (1448)
Q Consensus 294 ~~~LlVlDdv~~~-----~~~~------~~~l~~~l~~--~~~gs~ilvTtR~~~v~~-~~-~~---~~~~~l~~l~~~~ 355 (1448)
.++.|.||.++.. +... ..++...+.. ...|.-||-.|-.+++-. .+ .. ....-|+.-..+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 7999999998431 0011 2223333332 234555666554444422 21 22 2456667777888
Q ss_pred HHHHHhhccc
Q 048507 356 CLAVVAQHSL 365 (1448)
Q Consensus 356 a~~l~~~~~~ 365 (1448)
-.++++....
T Consensus 684 R~~ILK~~tk 693 (802)
T KOG0733|consen 684 RVAILKTITK 693 (802)
T ss_pred HHHHHHHHhc
Confidence 8888877665
No 273
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.50 E-value=0.01 Score=58.47 Aligned_cols=108 Identities=19% Similarity=0.137 Sum_probs=60.3
Q ss_pred eccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccc-ccccceEEEEEeCCccCHHHHHHHHHHh
Q 048507 191 YGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRV-QDHFDLKAWTCVSDDFDVKGLTKTILRS 269 (1448)
Q Consensus 191 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 269 (1448)
||+...++++.+.+..-. .....|.|+|..|+||+++|+.++..... ...|..+ .+....
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~~~------------ 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCASLP------------ 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHCTC------------
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhhCc------------
Confidence 466667777777665421 12345789999999999999998874321 2223211 111100
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccC-CCCCcEEEEEcCch
Q 048507 270 VTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEA-GAPGSKIIVTTRNQ 334 (1448)
Q Consensus 270 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~~ 334 (1448)
.+.+.+ .+.--++++|+..-.......+...+.. .....|+|.||+..
T Consensus 62 --------------~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 62 --------------AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp --------------HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred --------------HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 111111 1444677999977665555555555543 25678999998853
No 274
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.12 Score=64.05 Aligned_cols=154 Identities=19% Similarity=0.251 Sum_probs=82.6
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccc-----ceEEEEEeCCccCHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHF-----DLKAWTCVSDDFDVKGL 262 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-----~~~~wv~~~~~~~~~~~ 262 (1448)
++++||++|++++++.|..... +-+ .++|.+|+|||++|.-++... +.+.- +..++.-
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K----NNP--vLiGEpGVGKTAIvEGLA~rI-v~g~VP~~L~~~~i~sL---------- 232 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK----NNP--VLVGEPGVGKTAIVEGLAQRI-VNGDVPESLKDKRIYSL---------- 232 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC----CCC--eEecCCCCCHHHHHHHHHHHH-hcCCCCHHHcCCEEEEe----------
Confidence 4589999999999999976532 112 468999999999988777621 11111 1111110
Q ss_pred HHHHHHhccCCCCCCCCHHHHHH-HHHHHhCCccEEEEEecCCCCC--------hhhHhhhcccccCCCCCcEEEEEcCc
Q 048507 263 TKTILRSVTKQTIDDSDLNLLQE-ELKKKLSQKKFLLVLDDVWNEN--------YNDWVRLSRPFEAGAPGSKIIVTTRN 333 (1448)
Q Consensus 263 ~~~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ilvTtR~ 333 (1448)
++..-+.+... ..+.++... .+.+.-+.++.++++|.++..- ..+-..+..+....+ .-+.|-.|..
T Consensus 233 --D~g~LvAGaky-RGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG-eL~~IGATT~ 308 (786)
T COG0542 233 --DLGSLVAGAKY-RGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG-ELRCIGATTL 308 (786)
T ss_pred --cHHHHhccccc-cCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC-CeEEEEeccH
Confidence 11222222222 223333333 3333334558999999985420 011222222222222 2344444443
Q ss_pred hhhhhcc-------CCcceEeCCCCCHHHHHHHHhh
Q 048507 334 QEVADIM-------GTASAYQLKKLSIDDCLAVVAQ 362 (1448)
Q Consensus 334 ~~v~~~~-------~~~~~~~l~~l~~~~a~~l~~~ 362 (1448)
.+..+.+ .-.+.+.|..-+.+++..+++.
T Consensus 309 ~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 309 DEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRG 344 (786)
T ss_pred HHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHH
Confidence 3332222 2235788999999999988864
No 275
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.037 Score=59.23 Aligned_cols=79 Identities=15% Similarity=0.277 Sum_probs=50.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCc--ccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDK--RVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLS 292 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~--~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 292 (1448)
-|+|.++|++|.|||+|++++++.. |..+.|....-+.+... .++.+...+ ...-+..+.+.|.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFsE------SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFSE------SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHhh------hhhHHHHHHHHHHHHHh
Confidence 3889999999999999999999865 44566655555554432 222222221 22334556666777776
Q ss_pred Ccc--EEEEEecC
Q 048507 293 QKK--FLLVLDDV 303 (1448)
Q Consensus 293 ~~~--~LlVlDdv 303 (1448)
++. +.+.+|.|
T Consensus 247 d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 247 DRGNLVFVLIDEV 259 (423)
T ss_pred CCCcEEEEEeHHH
Confidence 654 45667888
No 276
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.47 E-value=0.04 Score=60.38 Aligned_cols=89 Identities=25% Similarity=0.230 Sum_probs=53.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccc----cccceEEEEEeCCccCHHHHHHHHHHhccCCCC---------CCCCH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQ----DHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTI---------DDSDL 280 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 280 (1448)
...+.=|+|.+|+|||+||.+++-..... +.=..++|++....++...+. +|+++...+.. ...+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 45789999999999999998876432222 223469999999988887665 45655432110 12233
Q ss_pred HHHHHHHH---HHh-CCccEEEEEecC
Q 048507 281 NLLQEELK---KKL-SQKKFLLVLDDV 303 (1448)
Q Consensus 281 ~~~~~~l~---~~l-~~~~~LlVlDdv 303 (1448)
+++...+. ..+ .++--|||+|.+
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHhhccccceEEEEecch
Confidence 33333332 223 234458888887
No 277
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.38 E-value=0.093 Score=62.02 Aligned_cols=88 Identities=16% Similarity=0.049 Sum_probs=49.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCcc-CHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCC
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDF-DVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQ 293 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 293 (1448)
.++++++|++|+||||++..++........-..+..++..... ...+.++...+.++.......+.+++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 4699999999999999998877532211222346666654321 122333444444444333334445555555543 2
Q ss_pred ccEEEEEecCC
Q 048507 294 KKFLLVLDDVW 304 (1448)
Q Consensus 294 ~~~LlVlDdv~ 304 (1448)
..=+||+|..-
T Consensus 299 ~~DlVlIDt~G 309 (424)
T PRK05703 299 DCDVILIDTAG 309 (424)
T ss_pred CCCEEEEeCCC
Confidence 34688999773
No 278
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.38 E-value=0.1 Score=61.47 Aligned_cols=88 Identities=15% Similarity=0.109 Sum_probs=49.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCc-cCHHHHHHHHHHhccCCCCC---CCCHHHHHHHHHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDD-FDVKGLTKTILRSVTKQTID---DSDLNLLQEELKK 289 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 289 (1448)
.+.+|.++|.+|+||||+|..++..... ..+ .+..+++... ....+.++.+.++++.+... ..+.........+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~-~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKK-KGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHH-cCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 5689999999999999999998864332 222 3444444321 22344556666666543221 2233332222222
Q ss_pred HhCCccEEEEEecCC
Q 048507 290 KLSQKKFLLVLDDVW 304 (1448)
Q Consensus 290 ~l~~~~~LlVlDdv~ 304 (1448)
...+. -+||+|..-
T Consensus 172 ~~~~~-DvVIIDTAG 185 (437)
T PRK00771 172 KFKKA-DVIIVDTAG 185 (437)
T ss_pred HhhcC-CEEEEECCC
Confidence 33333 568888874
No 279
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.33 E-value=0.093 Score=59.60 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=42.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCccc----ccccceEEEEEeCCccCHHHHHHHHHHhccC
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKRV----QDHFDLKAWTCVSDDFDVKGLTKTILRSVTK 272 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 272 (1448)
+..+++-|+|.+|+|||+|+.+++-.... .+.-..++|++....+++..+.+ +++.++.
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 45688999999999999999888632221 12235789999999888887654 4555543
No 280
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.33 E-value=0.067 Score=58.37 Aligned_cols=91 Identities=21% Similarity=0.135 Sum_probs=57.9
Q ss_pred CCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCC-CCCCCHHH---HHHH
Q 048507 211 NDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQT-IDDSDLNL---LQEE 286 (1448)
Q Consensus 211 ~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~---~~~~ 286 (1448)
+-+..+++=|+|+.|.||||+|.+++-. .+..-..++|++..+.+++..+..-....+..-. ....+.++ +.+.
T Consensus 56 Gl~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 56 GLPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEK 133 (279)
T ss_pred CcccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHH
Confidence 3456789999999999999999887753 3334447999999999988765443322121110 12333333 3333
Q ss_pred HHHHhCCccEEEEEecC
Q 048507 287 LKKKLSQKKFLLVLDDV 303 (1448)
Q Consensus 287 l~~~l~~~~~LlVlDdv 303 (1448)
+......+--|+|+|.+
T Consensus 134 ~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 134 LARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHHhccCCCCEEEEecC
Confidence 33333344569999998
No 281
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.29 E-value=0.14 Score=57.98 Aligned_cols=90 Identities=16% Similarity=0.059 Sum_probs=57.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCc-cCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDD-FDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLS 292 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 292 (1448)
+.++++++|+.|+||||++..++.....+ -..+.++++... ....+-++...+.++.......+..++.+.+...-.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 46899999999999999999888633222 234666665432 233455666666665543344566777666654431
Q ss_pred -CccEEEEEecCCC
Q 048507 293 -QKKFLLVLDDVWN 305 (1448)
Q Consensus 293 -~~~~LlVlDdv~~ 305 (1448)
+..=+|++|-.-.
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 3446888998854
No 282
>PRK14974 cell division protein FtsY; Provisional
Probab=95.28 E-value=0.098 Score=59.28 Aligned_cols=91 Identities=13% Similarity=0.089 Sum_probs=49.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCC-ccCHHHHHHHHHHhccCCCC---CCCCHHH-HHHHHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSD-DFDVKGLTKTILRSVTKQTI---DDSDLNL-LQEELK 288 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~-~~~~l~ 288 (1448)
+..++.++|++|+||||++..++.... ...+ .++.+.... .....+.++...+.++.... ...++.. +.+.+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 468999999999999998888876322 1223 334444321 12233445556666654322 1223322 233333
Q ss_pred HHhCCccEEEEEecCCCC
Q 048507 289 KKLSQKKFLLVLDDVWNE 306 (1448)
Q Consensus 289 ~~l~~~~~LlVlDdv~~~ 306 (1448)
.......=+|++|.+...
T Consensus 217 ~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 217 HAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHhCCCCEEEEECCCcc
Confidence 322222338999998544
No 283
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.28 E-value=0.013 Score=69.24 Aligned_cols=49 Identities=20% Similarity=0.333 Sum_probs=40.0
Q ss_pred eEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 189 QVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
+++|.++.+++|++.|......-....+++.++|++|+|||+||+.+++
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999999432221234568999999999999999999987
No 284
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.25 E-value=0.054 Score=61.24 Aligned_cols=89 Identities=19% Similarity=0.109 Sum_probs=54.2
Q ss_pred CcEEEEEEcCCCCcHHH-HHHHHHcCcccccccceEEEEEeCC-ccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh
Q 048507 214 GFSVIPIIGMGGLGKTT-LAQLVYNDKRVQDHFDLKAWTCVSD-DFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKL 291 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTt-La~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 291 (1448)
+.++|+++|+.|+|||| ||+..+.-....+.. .+..++... .....+-++..++-++.+-.-..+..++..++...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~-kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l- 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKK-KVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL- 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCc-ceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-
Confidence 36899999999999975 555554422123333 455555433 34556666777777776655566677766666543
Q ss_pred CCccEEEEEecCCC
Q 048507 292 SQKKFLLVLDDVWN 305 (1448)
Q Consensus 292 ~~~~~LlVlDdv~~ 305 (1448)
++. =+|.+|-+..
T Consensus 280 ~~~-d~ILVDTaGr 292 (407)
T COG1419 280 RDC-DVILVDTAGR 292 (407)
T ss_pred hcC-CEEEEeCCCC
Confidence 333 4566677744
No 285
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.23 E-value=0.074 Score=62.81 Aligned_cols=90 Identities=17% Similarity=0.090 Sum_probs=48.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCC-ccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSD-DFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLS 292 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 292 (1448)
...+++|+|++|+||||++..++.....+.....+..++... .....+.++...+.++.......+...+...+.+. .
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-R 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-c
Confidence 457999999999999999988875322221123344554422 11222333333333433222333444555555433 3
Q ss_pred CccEEEEEecCCC
Q 048507 293 QKKFLLVLDDVWN 305 (1448)
Q Consensus 293 ~~~~LlVlDdv~~ 305 (1448)
..=+|++|..-.
T Consensus 428 -~~DLVLIDTaG~ 439 (559)
T PRK12727 428 -DYKLVLIDTAGM 439 (559)
T ss_pred -cCCEEEecCCCc
Confidence 345888998843
No 286
>PRK08233 hypothetical protein; Provisional
Probab=95.22 E-value=0.05 Score=56.83 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
..+|+|.|.+|+||||+|+.++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 478999999999999999999874
No 287
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.22 E-value=0.019 Score=57.34 Aligned_cols=95 Identities=26% Similarity=0.446 Sum_probs=65.6
Q ss_pred eeEEEeCCCCccccCcccc-CCccceEEeccCccccccChhhhccccccEEeccCCchhhcccccc-cccCCCCeeeecC
Q 048507 597 LRVFSLRGYRIDELPDSIG-DLRYFRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADM-GNLAKLHHLKNSN 674 (1448)
Q Consensus 597 L~~L~L~~n~i~~lp~~i~-~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~i-~~L~~L~~L~l~~ 674 (1448)
=+.++|.+.++..+-. ++ -+.+...+||++|.+..++ .|..+..|.+|.|++|.. ..+-..+ .-+++|..|.|.+
T Consensus 21 e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrI-t~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRI-TRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccccchhh-ccccccccceecccccchhhcc-cCCCccccceEEecCCcc-eeeccchhhhccccceEEecC
Confidence 4667777777654422 22 2346789999999998774 577899999999999754 4444445 5567899999999
Q ss_pred CCCcccccc--ccCccccccccc
Q 048507 675 TKSLEEMPV--GIGRLTSLQTLC 695 (1448)
Q Consensus 675 ~~~l~~~p~--~i~~L~~L~~L~ 695 (1448)
|+ +.++.. .+..+++|++|.
T Consensus 98 Ns-i~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 98 NS-IQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cc-hhhhhhcchhccCCccceee
Confidence 98 655532 245556666663
No 288
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.15 E-value=0.046 Score=62.86 Aligned_cols=86 Identities=15% Similarity=0.099 Sum_probs=44.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCC-ccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSD-DFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLS 292 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 292 (1448)
...++.++|++|+||||+|..++........+ .+..++... .......++..++.++.+.....+...+.+.+. +
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~---~ 297 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLA---R 297 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHH---h
Confidence 35789999999999999999998632222222 233333322 112233344444454443222222333333332 2
Q ss_pred CccEEEEEecC
Q 048507 293 QKKFLLVLDDV 303 (1448)
Q Consensus 293 ~~~~LlVlDdv 303 (1448)
...=+||+|-.
T Consensus 298 ~~~D~VLIDTa 308 (432)
T PRK12724 298 DGSELILIDTA 308 (432)
T ss_pred CCCCEEEEeCC
Confidence 23346899954
No 289
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.15 E-value=0.096 Score=59.31 Aligned_cols=58 Identities=19% Similarity=0.098 Sum_probs=39.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCccc---cc-ccceEEEEEeCCccCHHHHHHHHHHhcc
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKRV---QD-HFDLKAWTCVSDDFDVKGLTKTILRSVT 271 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 271 (1448)
+...++.|+|.+|+|||++|..++..... .+ .-..++|++....++...+ .++++.++
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 35689999999999999999988742211 11 1236799998887777653 44455443
No 290
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.15 E-value=0.012 Score=36.36 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=18.9
Q ss_pred ceeEEEeCCCCccccCccccCC
Q 048507 596 RLRVFSLRGYRIDELPDSIGDL 617 (1448)
Q Consensus 596 ~L~~L~L~~n~i~~lp~~i~~l 617 (1448)
+|++|||++|+|+.+|+.|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999888754
No 291
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.14 E-value=0.047 Score=56.50 Aligned_cols=78 Identities=23% Similarity=0.202 Sum_probs=44.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhc--cCCCCCCCCHHHHHHHHHHH
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSV--TKQTIDDSDLNLLQEELKKK 290 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~~~~l~~~ 290 (1448)
.++.+|+|.|.+|+||||+|+.++. ...... +.-++...-+. ..-.....+.. .-...++.+.+-+.+.+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEeecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 4568999999999999999999987 333331 11122111110 10111111111 11223556778888888888
Q ss_pred hCCcc
Q 048507 291 LSQKK 295 (1448)
Q Consensus 291 l~~~~ 295 (1448)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88877
No 292
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.14 E-value=0.078 Score=56.55 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=71.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCC-----ccCHHHHHHHHHHhccCCCC------CCCCHHHH
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSD-----DFDVKGLTKTILRSVTKQTI------DDSDLNLL 283 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~------~~~~~~~~ 283 (1448)
..+++|+|..|+||||+|+.+.. ....-...+++.-.+ .....+...++++.++.... ..-+-.+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 46899999999999999999986 333333444443222 22234556667777664321 11122233
Q ss_pred HH-HHHHHhCCccEEEEEecCCCCCh----hhHhhhcccccCCCCCcEEEEEcCchhhhhccC
Q 048507 284 QE-ELKKKLSQKKFLLVLDDVWNENY----NDWVRLSRPFEAGAPGSKIIVTTRNQEVADIMG 341 (1448)
Q Consensus 284 ~~-~l~~~l~~~~~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~ 341 (1448)
++ .+.+.+.-++-++|.|..-..-+ .+.-.+...+.. ..|-..+..|-+-.++..+.
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhhc
Confidence 32 45667788899999998744321 111222222222 24566777777777766554
No 293
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.13 E-value=0.02 Score=58.24 Aligned_cols=80 Identities=15% Similarity=0.168 Sum_probs=42.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCC--CC-CCCCHHHHHHHHHHHhCC
Q 048507 217 VIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQ--TI-DDSDLNLLQEELKKKLSQ 293 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~--~~-~~~~~~~~~~~l~~~l~~ 293 (1448)
++.|.|.+|+||||+|..++... .. .++++.-....+ .+..+.+....... .+ .......+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~--~~---~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS--GL---QVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc--CC---CcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 58899999999999999988632 11 233444333333 33444443322211 11 111122344444443332
Q ss_pred ccEEEEEecC
Q 048507 294 KKFLLVLDDV 303 (1448)
Q Consensus 294 ~~~LlVlDdv 303 (1448)
.-++|+|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 337899987
No 294
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.13 E-value=0.098 Score=61.39 Aligned_cols=91 Identities=13% Similarity=0.061 Sum_probs=49.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCc-cCHHHHHHHHHHhccCCCC---CCCCHHHHHHHHHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDD-FDVKGLTKTILRSVTKQTI---DDSDLNLLQEELKK 289 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 289 (1448)
.+.++.++|.+|+||||.|..++.....+..+ .+..|++... ....+.+....+..+.+.. ...++..+.....+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 46899999999999999998887632111222 3444444322 1223334445555543322 22344444433333
Q ss_pred HhCCccE-EEEEecCCC
Q 048507 290 KLSQKKF-LLVLDDVWN 305 (1448)
Q Consensus 290 ~l~~~~~-LlVlDdv~~ 305 (1448)
....+.+ +||+|-.-.
T Consensus 177 ~~~~~~~DvVIIDTaGr 193 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGR 193 (428)
T ss_pred HHHhcCCCEEEEeCCCc
Confidence 3333444 888888753
No 295
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.12 E-value=0.089 Score=60.87 Aligned_cols=91 Identities=15% Similarity=0.094 Sum_probs=55.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccc--ccceEEEEEeCCc-cCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQD--HFDLKAWTCVSDD-FDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKK 290 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 290 (1448)
..++|.++|+.|+||||.+..++....... .-..+..+++... ....+.++..++.++.+.......+.+...+.+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 357999999999999999988876332211 1123444554432 2233345666666665433344556665555543
Q ss_pred hCCccEEEEEecCCCC
Q 048507 291 LSQKKFLLVLDDVWNE 306 (1448)
Q Consensus 291 l~~~~~LlVlDdv~~~ 306 (1448)
.+.-+|++|.+...
T Consensus 253 --~~~DlVLIDTaGr~ 266 (388)
T PRK12723 253 --KDFDLVLVDTIGKS 266 (388)
T ss_pred --CCCCEEEEcCCCCC
Confidence 34568999998543
No 296
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.11 E-value=0.85 Score=51.03 Aligned_cols=152 Identities=11% Similarity=0.032 Sum_probs=89.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccc------c--cccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRV------Q--DHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEE 286 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~------~--~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 286 (1448)
.++..++|..|.||+++|..+.+..-. . .+-+-+.+++..+ .....+++.+.
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g--------------------~~i~vd~Ir~l 77 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD--------------------KDLSKSEFLSA 77 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC--------------------CcCCHHHHHHH
Confidence 467779999999999999998763200 1 1111122222101 11122333322
Q ss_pred HHHHh-----CCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcC-chhhhhcc-CCcceEeCCCCCHHHHHHH
Q 048507 287 LKKKL-----SQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTR-NQEVADIM-GTASAYQLKKLSIDDCLAV 359 (1448)
Q Consensus 287 l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR-~~~v~~~~-~~~~~~~l~~l~~~~a~~l 359 (1448)
+...- .+++-++|+|++..........+...+.....++.+|++|. ...+.... .....+++.+++.++..+.
T Consensus 78 ~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~ 157 (299)
T PRK07132 78 INKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAK 157 (299)
T ss_pred HHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHH
Confidence 22210 14677899999976665566667777766666777776554 34444332 3356899999999999887
Q ss_pred HhhcccCCchhhHHHHHHHHHhcCCchHHHHH
Q 048507 360 VAQHSLGSDKLLEEIGKKIVAKCDGLPLAAQT 391 (1448)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 391 (1448)
+... + ..++.+..++...+|.=-|+..
T Consensus 158 l~~~--~---~~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 158 LLSK--N---KEKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred HHHc--C---CChhHHHHHHHHcCCHHHHHHH
Confidence 7764 2 1234566667777763345544
No 297
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.09 E-value=0.088 Score=57.22 Aligned_cols=87 Identities=16% Similarity=0.235 Sum_probs=52.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccc-ceEEEEEeCCcc-CHHHHHHHHHHhccCC-------CCCCCCHHH---
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHF-DLKAWTCVSDDF-DVKGLTKTILRSVTKQ-------TIDDSDLNL--- 282 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 282 (1448)
-..++|.|..|+||||||+.+++. .+.+| +.++++-+.+.. .+.++..++.+.-..+ ..+.....+
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 457899999999999999999984 33344 345666666554 3455555555431111 111111111
Q ss_pred --HHHHHHHHh--C-CccEEEEEecC
Q 048507 283 --LQEELKKKL--S-QKKFLLVLDDV 303 (1448)
Q Consensus 283 --~~~~l~~~l--~-~~~~LlVlDdv 303 (1448)
..-.+.+++ + ++.+|+|+||+
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 112234444 3 88999999998
No 298
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.08 E-value=0.15 Score=52.95 Aligned_cols=120 Identities=16% Similarity=0.166 Sum_probs=62.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeC--CccCHHHHH------HHHHHhccCCCC-----CCCCH-
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVS--DDFDVKGLT------KTILRSVTKQTI-----DDSDL- 280 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~--~~~~~~~~~------~~i~~~l~~~~~-----~~~~~- 280 (1448)
-.+++|.|..|.|||||++.++... ......+++.-. ...+..... .++++.++.... ..-+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 3689999999999999999998632 223333443211 111221111 113444443211 11111
Q ss_pred HHHHHHHHHHhCCccEEEEEecCCCC-ChhhHhhhcccccCC-CC-CcEEEEEcCchhhh
Q 048507 281 NLLQEELKKKLSQKKFLLVLDDVWNE-NYNDWVRLSRPFEAG-AP-GSKIIVTTRNQEVA 337 (1448)
Q Consensus 281 ~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~ilvTtR~~~v~ 337 (1448)
+...-.+.+.+-..+-++++|+.-.. +......+...+... .. |..||++|.+.+..
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 22223355566678889999997432 222233333333221 12 56788888776554
No 299
>PRK10867 signal recognition particle protein; Provisional
Probab=95.02 E-value=0.068 Score=62.70 Aligned_cols=89 Identities=16% Similarity=0.126 Sum_probs=47.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccc-cceEEEEEeCCc-cCHHHHHHHHHHhccCCCC---CCCCHHHHHHHHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDH-FDLKAWTCVSDD-FDVKGLTKTILRSVTKQTI---DDSDLNLLQEELK 288 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~ 288 (1448)
...+|.++|.+|+||||.|..++... ... -..++.|++... ....+-++...+..+.+.. ...++..+.....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l--~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL--KKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH--HHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 45899999999999999888887632 222 123444444321 1222334444555543211 2234444443333
Q ss_pred HHhCCccE-EEEEecCC
Q 048507 289 KKLSQKKF-LLVLDDVW 304 (1448)
Q Consensus 289 ~~l~~~~~-LlVlDdv~ 304 (1448)
+..+.+.+ +||+|-.-
T Consensus 177 ~~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 177 EEAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 33333334 77777764
No 300
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.02 E-value=0.23 Score=57.60 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=33.5
Q ss_pred cchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 048507 193 RETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDK 239 (1448)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 239 (1448)
|+.-.+.+.+.+... ......+|+|.|.=|+|||++.+.+.+..
T Consensus 1 ~~~~a~~la~~I~~~---~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 1 RKPYAKALAEIIKNP---DSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred ChHHHHHHHHHHhcc---CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344566777777654 22567899999999999999999987743
No 301
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.97 E-value=0.083 Score=54.79 Aligned_cols=118 Identities=19% Similarity=0.077 Sum_probs=58.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhcc--CCC------------CCCCCH
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVT--KQT------------IDDSDL 280 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~--~~~------------~~~~~~ 280 (1448)
-.+++|.|..|+|||||++.++--.. .....+++.-. +.......+.+.++ .+. ...-..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 36899999999999999999986321 22233333211 11111111111111 000 001111
Q ss_pred -HHHHHHHHHHhCCccEEEEEecCCCC-ChhhHhhhcccccCCCCCcEEEEEcCchhhhh
Q 048507 281 -NLLQEELKKKLSQKKFLLVLDDVWNE-NYNDWVRLSRPFEAGAPGSKIIVTTRNQEVAD 338 (1448)
Q Consensus 281 -~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 338 (1448)
+...-.+.+.+-.++-++++|+.... +....+.+...+.....+..||++|.+.+...
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 12222344556677889999998543 21222222222222223567888888776554
No 302
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.95 E-value=0.051 Score=59.33 Aligned_cols=87 Identities=20% Similarity=0.137 Sum_probs=54.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCC------------------
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQT------------------ 274 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------------ 274 (1448)
+..+++.|+|.+|+|||++|.++.... ...=..++|++..+. ..++.+.+ .+++-..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~--~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA--LKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH--HhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 456899999999999999999986532 112346888888653 45555543 2222110
Q ss_pred --CCCCCHHHHHHHHHHHhCC-ccEEEEEecCC
Q 048507 275 --IDDSDLNLLQEELKKKLSQ-KKFLLVLDDVW 304 (1448)
Q Consensus 275 --~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 304 (1448)
....+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666653 55689999974
No 303
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.91 E-value=0.016 Score=60.81 Aligned_cols=102 Identities=20% Similarity=0.178 Sum_probs=51.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh----
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKL---- 291 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l---- 291 (1448)
+++.|.|.+|+||||+++.+.......+ ..++++ ......... +.+..+.. ...+.. .+...-
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g--~~v~~~-apT~~Aa~~----L~~~~~~~---a~Ti~~---~l~~~~~~~~ 85 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG--KRVIGL-APTNKAAKE----LREKTGIE---AQTIHS---FLYRIPNGDD 85 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT----EEEE-ESSHHHHHH----HHHHHTS----EEEHHH---HTTEECCEEC
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC--CeEEEE-CCcHHHHHH----HHHhhCcc---hhhHHH---HHhcCCcccc
Confidence 6888999999999999998876332222 223333 333222222 33332211 111111 000000
Q ss_pred -----CCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcC
Q 048507 292 -----SQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTR 332 (1448)
Q Consensus 292 -----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR 332 (1448)
..++-+||+|++...+...+..+...... .|+|+|+.=-
T Consensus 86 ~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD 129 (196)
T PF13604_consen 86 EGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGD 129 (196)
T ss_dssp CSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-
T ss_pred cccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 12345999999977666667776665544 4778776543
No 304
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.84 E-value=0.12 Score=53.05 Aligned_cols=120 Identities=19% Similarity=0.222 Sum_probs=58.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCC--ccCHHHHHHHHHHhccCCC-C-CC------CCHHH-H
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSD--DFDVKGLTKTILRSVTKQT-I-DD------SDLNL-L 283 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~-~-~~------~~~~~-~ 283 (1448)
-.+++|.|..|.|||||.+.++.-. ......+++.-.. ....... +..+..+.... . .. -+..+ .
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~-~~~i~~~~~~~~~~~~t~~e~lLS~G~~~ 103 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESL-RKNIAYVPQDPFLFSGTIRENILSGGQRQ 103 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHH-HhhEEEEcCCchhccchHHHHhhCHHHHH
Confidence 4689999999999999999998632 2233333332111 0011111 11000010000 0 00 01111 1
Q ss_pred HHHHHHHhCCccEEEEEecCCCC-ChhhHhhhcccccCCCCCcEEEEEcCchhhhh
Q 048507 284 QEELKKKLSQKKFLLVLDDVWNE-NYNDWVRLSRPFEAGAPGSKIIVTTRNQEVAD 338 (1448)
Q Consensus 284 ~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 338 (1448)
.-.+.+.+-.++-++++|+-... +......+...+.....+..||++|.+.+...
T Consensus 104 rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 159 (171)
T cd03228 104 RIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 12244556677889999997433 21222233332222223567888888776654
No 305
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.83 E-value=0.096 Score=57.92 Aligned_cols=89 Identities=16% Similarity=0.174 Sum_probs=50.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCH--HHHHHHHHHhccCCCC---CCCCHHH-HHHHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDV--KGLTKTILRSVTKQTI---DDSDLNL-LQEEL 287 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~---~~~~~~~-~~~~l 287 (1448)
..+++.++|++|+||||++..++... ...-..+.++++.. +.. .+-++...+..+.... ...+... ..+.+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 46899999999999999998887633 22223466665543 222 2333444555442211 1223322 23444
Q ss_pred HHHhCCccEEEEEecCCC
Q 048507 288 KKKLSQKKFLLVLDDVWN 305 (1448)
Q Consensus 288 ~~~l~~~~~LlVlDdv~~ 305 (1448)
........=++++|-.-.
T Consensus 148 ~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHCCCCEEEEeCCCC
Confidence 444344455888998744
No 306
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=0.063 Score=63.76 Aligned_cols=73 Identities=22% Similarity=0.221 Sum_probs=49.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCcc--CHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDF--DVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKL 291 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 291 (1448)
...-|.|.|+.|+|||+||+++++... +...-.+.+++++.-. ....+++. +...+.+.+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~-----------------l~~vfse~~ 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF-----------------LNNVFSEAL 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH-----------------HHHHHHHHH
Confidence 345788999999999999999998544 5555566667766532 12222221 122344556
Q ss_pred CCccEEEEEecCC
Q 048507 292 SQKKFLLVLDDVW 304 (1448)
Q Consensus 292 ~~~~~LlVlDdv~ 304 (1448)
...+-+|||||++
T Consensus 492 ~~~PSiIvLDdld 504 (952)
T KOG0735|consen 492 WYAPSIIVLDDLD 504 (952)
T ss_pred hhCCcEEEEcchh
Confidence 7789999999994
No 307
>PRK05439 pantothenate kinase; Provisional
Probab=94.79 E-value=0.14 Score=57.20 Aligned_cols=81 Identities=17% Similarity=0.066 Sum_probs=44.9
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHcCcccccc--cceEEEEEeCCccCHHHHHHHHHHhcc-CCCCCCCCHHHHHHHHH
Q 048507 212 DGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDH--FDLKAWTCVSDDFDVKGLTKTILRSVT-KQTIDDSDLNLLQEELK 288 (1448)
Q Consensus 212 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~l~ 288 (1448)
.....+|+|.|.+|+||||+|+.+... .... -..+.-++...-+-..+.+..- ..+. ...++.-+.+.+.+.+.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~--l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~ 159 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQAL--LSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLS 159 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH--HHhhCCCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHH
Confidence 346789999999999999999988762 2211 1233444444332222222110 0111 11234556777777777
Q ss_pred HHhCCcc
Q 048507 289 KKLSQKK 295 (1448)
Q Consensus 289 ~~l~~~~ 295 (1448)
....++.
T Consensus 160 ~Lk~G~~ 166 (311)
T PRK05439 160 DVKSGKP 166 (311)
T ss_pred HHHcCCC
Confidence 6666554
No 308
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.79 E-value=0.0025 Score=64.40 Aligned_cols=87 Identities=16% Similarity=0.174 Sum_probs=78.0
Q ss_pred hhcccCceeEEEeCCCCccccCccccCCccceEEeccCccccccChhhhccccccEEeccCCchhhcccccccccCCCCe
Q 048507 590 ELFKLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHH 669 (1448)
Q Consensus 590 ~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~~L~~ 669 (1448)
++..++..++||++.|++..+-..|+-+..|..||++.|.|.-+|..++.+..++.+++..| .....|.+++.++.+++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcch
Confidence 44577899999999999988888899999999999999999999999999999999998775 67889999999999999
Q ss_pred eeecCCCC
Q 048507 670 LKNSNTKS 677 (1448)
Q Consensus 670 L~l~~~~~ 677 (1448)
+++-+|.+
T Consensus 116 ~e~k~~~~ 123 (326)
T KOG0473|consen 116 NEQKKTEF 123 (326)
T ss_pred hhhccCcc
Confidence 99988873
No 309
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.78 E-value=0.0048 Score=64.19 Aligned_cols=81 Identities=23% Similarity=0.284 Sum_probs=67.1
Q ss_pred hhc-ccCceeEEEeCCCCccccCccccCCccceEEeccCccccccC--hhhhccccccEEeccCCchhhcccc-----cc
Q 048507 590 ELF-KLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLP--ESVNKLYNLHSLLLEDCDRLKKLCA-----DM 661 (1448)
Q Consensus 590 ~~~-~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp--~~i~~L~~L~~L~L~~n~~~~~lp~-----~i 661 (1448)
.++ +++.|+||.|+-|.|+.|. .+..+++|+.|.|+.|.|..+- .-+.+|++|+.|-|..|.-.+.-+. .+
T Consensus 35 sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL 113 (388)
T KOG2123|consen 35 SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVL 113 (388)
T ss_pred HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHH
Confidence 345 9999999999999999984 4788999999999999999775 4568999999999998866655543 25
Q ss_pred cccCCCCeee
Q 048507 662 GNLAKLHHLK 671 (1448)
Q Consensus 662 ~~L~~L~~L~ 671 (1448)
.-|++|+.||
T Consensus 114 R~LPnLkKLD 123 (388)
T KOG2123|consen 114 RVLPNLKKLD 123 (388)
T ss_pred HHcccchhcc
Confidence 6788888886
No 310
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.78 E-value=0.025 Score=54.41 Aligned_cols=24 Identities=38% Similarity=0.385 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDK 239 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~ 239 (1448)
--|+|.|++|+||||+++.+++..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 468999999999999999999743
No 311
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.78 E-value=0.047 Score=59.68 Aligned_cols=82 Identities=23% Similarity=0.252 Sum_probs=47.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQ 293 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 293 (1448)
+..-+.++|.+|+|||.||.++.++. ...-..+.++++ .++..++...... .. ....+.+.++
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l--~~~g~sv~f~~~------~el~~~Lk~~~~~----~~----~~~~l~~~l~- 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNEL--LKAGISVLFITA------PDLLSKLKAAFDE----GR----LEEKLLRELK- 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEEH------HHHHHHHHHHHhc----Cc----hHHHHHHHhh-
Confidence 34568899999999999999999843 332234566643 3455555444322 11 1112222221
Q ss_pred ccEEEEEecCCCCChhhHh
Q 048507 294 KKFLLVLDDVWNENYNDWV 312 (1448)
Q Consensus 294 ~~~LlVlDdv~~~~~~~~~ 312 (1448)
+-=||||||+.......|.
T Consensus 167 ~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 167 KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred cCCEEEEecccCccCCHHH
Confidence 2338999999665444444
No 312
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.77 E-value=0.23 Score=49.51 Aligned_cols=60 Identities=17% Similarity=0.320 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhCCccEEEEEecCCCC-C-hhhHhhhcccccC-CCCCcEEEEEcCchhhhhccC
Q 048507 281 NLLQEELKKKLSQKKFLLVLDDVWNE-N-YNDWVRLSRPFEA-GAPGSKIIVTTRNQEVADIMG 341 (1448)
Q Consensus 281 ~~~~~~l~~~l~~~~~LlVlDdv~~~-~-~~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~~~~~ 341 (1448)
++..-.|.+.+-+++-+++-|.--.. + ...|+- ...|.. ...|+.|+++|-+.++...+.
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~i-m~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEI-MRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHH-HHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 34344566777788999999964211 1 123432 222222 346999999999988876553
No 313
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.34 Score=49.82 Aligned_cols=152 Identities=14% Similarity=0.184 Sum_probs=82.1
Q ss_pred eEec-cchhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHH
Q 048507 189 QVYG-RETEKKDVVELLLRDDL-------SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVK 260 (1448)
Q Consensus 189 ~~vG-r~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1448)
++|| -+.++++|.+.+.-.-. -+-.+++-+.++|++|.|||-||++|+++. .+.|+.++..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-------~c~firvsgs---- 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGS---- 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechH----
Confidence 3455 46666666655431110 022456778999999999999999999732 3456667654
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHh----CCccEEEEEecCCCCCh--------------hhHhhhcccccC--
Q 048507 261 GLTKTILRSVTKQTIDDSDLNLLQEELKKKL----SQKKFLLVLDDVWNENY--------------NDWVRLSRPFEA-- 320 (1448)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~~~LlVlDdv~~~~~--------------~~~~~l~~~l~~-- 320 (1448)
+ +++..-++ ..+.+++.+ ...+.+|..|.++.... ...-++...+..
T Consensus 216 e----lvqk~ige---------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfe 282 (404)
T KOG0728|consen 216 E----LVQKYIGE---------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFE 282 (404)
T ss_pred H----HHHHHhhh---------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccc
Confidence 1 22211111 112222221 34577888888754210 011222223332
Q ss_pred CCCCcEEEEEcCchhhhhcc-----CCcceEeCCCCCHHHHHHHHhhcc
Q 048507 321 GAPGSKIIVTTRNQEVADIM-----GTASAYQLKKLSIDDCLAVVAQHS 364 (1448)
Q Consensus 321 ~~~gs~ilvTtR~~~v~~~~-----~~~~~~~l~~l~~~~a~~l~~~~~ 364 (1448)
...+-+||..|..-++.... .....++..+-+++.-.++++-+.
T Consensus 283 atknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 283 ATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 23566788766544443221 223567777777777777776554
No 314
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.73 E-value=0.14 Score=52.29 Aligned_cols=114 Identities=19% Similarity=0.224 Sum_probs=59.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCc---ccccc---c--ceEEEEEeCCccCHHHHHHHHHHhccCCCC--C----CCCH
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDK---RVQDH---F--DLKAWTCVSDDFDVKGLTKTILRSVTKQTI--D----DSDL 280 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~---~~~~~---f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~----~~~~ 280 (1448)
-.+++|+|+.|+|||||.+.+..+. ++... | ..+.|+. + .+.++.++.... + .-..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~--q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID--Q--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh--H--------HHHHHHcCCCccccCCCcCcCCH
Confidence 4689999999999999999986421 11111 1 1133331 1 345555553221 1 1111
Q ss_pred H-HHHHHHHHHhCCc--cEEEEEecCCCC-ChhhHhhhcccccC-CCCCcEEEEEcCchhhhh
Q 048507 281 N-LLQEELKKKLSQK--KFLLVLDDVWNE-NYNDWVRLSRPFEA-GAPGSKIIVTTRNQEVAD 338 (1448)
Q Consensus 281 ~-~~~~~l~~~l~~~--~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~~ 338 (1448)
. ...-.+.+.+-.+ +-++++|..-.. +......+...+.. ...|..||++|.+.+...
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 1 2222344455556 778889987432 22222223332222 114667888888776553
No 315
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.70 E-value=0.18 Score=57.37 Aligned_cols=58 Identities=17% Similarity=0.098 Sum_probs=41.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCcccc----cccceEEEEEeCCccCHHHHHHHHHHhcc
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKRVQ----DHFDLKAWTCVSDDFDVKGLTKTILRSVT 271 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 271 (1448)
....++-|+|.+|+|||++|..++...... +.-..++|++....+++..+. ++++.++
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~ 182 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFG 182 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcC
Confidence 356889999999999999998877422211 112369999999988887654 4566554
No 316
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.67 E-value=0.17 Score=56.48 Aligned_cols=59 Identities=14% Similarity=0.096 Sum_probs=38.1
Q ss_pred eEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHH
Q 048507 189 QVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVK 260 (1448)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1448)
.++=..+....+..++... +-|.|.|.+|+||||+|+.++. +.... .+.|.+....+..
T Consensus 46 ~y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~--~l~~~---~~rV~~~~~l~~~ 104 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAA--RLNWP---CVRVNLDSHVSRI 104 (327)
T ss_pred CccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHH--HHCCC---eEEEEecCCCChh
Confidence 3444444556677777432 4588999999999999999987 33323 2345555554443
No 317
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.67 E-value=0.11 Score=53.66 Aligned_cols=87 Identities=14% Similarity=0.088 Sum_probs=44.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCcc-CHHHHHHHHHHhccCC---CCCCCCHHHHH-HHHHHHh
Q 048507 217 VIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDF-DVKGLTKTILRSVTKQ---TIDDSDLNLLQ-EELKKKL 291 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~---~~~~~~~~~~~-~~l~~~l 291 (1448)
++.++|++|+||||++..++... ...=..++.++..... ...+.+....+..+.. .....+...+. +.+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~--~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL--KKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--HHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999988632 2221234444433221 2233333334433321 11223444333 3344433
Q ss_pred CCccEEEEEecCCC
Q 048507 292 SQKKFLLVLDDVWN 305 (1448)
Q Consensus 292 ~~~~~LlVlDdv~~ 305 (1448)
....-++|+|....
T Consensus 80 ~~~~d~viiDt~g~ 93 (173)
T cd03115 80 EENFDVVIVDTAGR 93 (173)
T ss_pred hCCCCEEEEECccc
Confidence 44443666777643
No 318
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.67 E-value=0.14 Score=56.08 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048507 217 VIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
+..|+|++|+|||+||..++.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999998875
No 319
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.65 E-value=0.039 Score=58.18 Aligned_cols=110 Identities=12% Similarity=0.132 Sum_probs=56.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCcc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKK 295 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 295 (1448)
.+|.|+|+.|+||||++..+... ........+++-.. +.. .........+.... ...+.....+.++..+...+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~e~-~~E--~~~~~~~~~i~q~~-vg~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTIED-PIE--FVHESKRSLINQRE-VGLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEEcC-Ccc--ccccCccceeeecc-cCCCccCHHHHHHHHhcCCc
Confidence 47899999999999999987763 22233333333221 111 00000000000000 01122334566777777778
Q ss_pred EEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchhh
Q 048507 296 FLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQEV 336 (1448)
Q Consensus 296 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v 336 (1448)
=.+++|.+.+. +.+....... ..|..++.|+-...+
T Consensus 76 d~ii~gEird~--e~~~~~l~~a---~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 76 DVILVGEMRDL--ETIRLALTAA---ETGHLVMSTLHTNSA 111 (198)
T ss_pred CEEEEcCCCCH--HHHHHHHHHH---HcCCEEEEEecCCcH
Confidence 89999999654 3333322222 235557767654433
No 320
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.64 E-value=0.036 Score=64.83 Aligned_cols=42 Identities=17% Similarity=0.262 Sum_probs=36.7
Q ss_pred eEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 189 QVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
.++||++.++.+...+..+. -|.|.|++|+|||++|+.+...
T Consensus 21 ~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHH
Confidence 47899999999999997653 4789999999999999999873
No 321
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.64 E-value=0.1 Score=53.13 Aligned_cols=116 Identities=16% Similarity=0.118 Sum_probs=59.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCC--ccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSD--DFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLS 292 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 292 (1448)
-.+++|.|..|.|||||.+.++-.. ......+++.-.. ..+..+..+ +.++.- ..-..-+...-.+.+.+-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~-~qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMV-YQLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEE-EecCHHHHHHHHHHHHHh
Confidence 3689999999999999999998632 2334444443211 111111111 111110 011112222233455566
Q ss_pred CccEEEEEecCCCC-ChhhHhhhcccccCC-CCCcEEEEEcCchhhh
Q 048507 293 QKKFLLVLDDVWNE-NYNDWVRLSRPFEAG-APGSKIIVTTRNQEVA 337 (1448)
Q Consensus 293 ~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~ 337 (1448)
.++-++++|+.-.. +......+...+... ..|..||++|.+....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 77889999997433 222223333333221 2366788888876543
No 322
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.61 E-value=0.13 Score=54.81 Aligned_cols=120 Identities=18% Similarity=0.261 Sum_probs=68.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcc-----cc--c----cc---ceEEEEEeCCcc------CH----------------
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKR-----VQ--D----HF---DLKAWTCVSDDF------DV---------------- 259 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~-----~~--~----~f---~~~~wv~~~~~~------~~---------------- 259 (1448)
.+++|+|+.|.|||||.+.+.--.+ +. + .. ..+.||.=...+ ++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 7899999999999999999975111 00 0 01 245555421111 11
Q ss_pred ------HHHHHHHHHhccCCCC-----CCCCHHHHHHH-HHHHhCCccEEEEEecCC----CCChhhHhhhcccccCCCC
Q 048507 260 ------KGLTKTILRSVTKQTI-----DDSDLNLLQEE-LKKKLSQKKFLLVLDDVW----NENYNDWVRLSRPFEAGAP 323 (1448)
Q Consensus 260 ------~~~~~~i~~~l~~~~~-----~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~----~~~~~~~~~l~~~l~~~~~ 323 (1448)
.+...+.+++++.... ..-+-.+.++. +.+.|..++=|+|||.-- ........++...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 2444555555554322 12223344443 556778889999999742 22223344444444443
Q ss_pred CcEEEEEcCchhhh
Q 048507 324 GSKIIVTTRNQEVA 337 (1448)
Q Consensus 324 gs~ilvTtR~~~v~ 337 (1448)
|..||++|-|-...
T Consensus 189 g~tIl~vtHDL~~v 202 (254)
T COG1121 189 GKTVLMVTHDLGLV 202 (254)
T ss_pred CCEEEEEeCCcHHh
Confidence 88899999886543
No 323
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.61 E-value=0.068 Score=51.53 Aligned_cols=44 Identities=25% Similarity=0.352 Sum_probs=32.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCC
Q 048507 217 VIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQ 273 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 273 (1448)
+|.|.|++|+||||+|+.++++.... | + +.-.++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----V------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----e------eccHHHHHHHHHcCCC
Confidence 68999999999999999999843221 1 1 2345788888887654
No 324
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.60 E-value=0.13 Score=55.68 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
+...+++|.|+.|+|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999998863
No 325
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.57 E-value=0.056 Score=60.24 Aligned_cols=86 Identities=19% Similarity=0.064 Sum_probs=53.4
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCC-----CCCCHHHHHHH
Q 048507 212 DGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTI-----DDSDLNLLQEE 286 (1448)
Q Consensus 212 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~ 286 (1448)
-+..+++-|+|+.|+||||||..+... .+..-..++|++..+..+... ++.++.+.. .+...++....
T Consensus 50 ~p~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~ 122 (322)
T PF00154_consen 50 LPRGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWI 122 (322)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHH
T ss_pred cccCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHH
Confidence 345689999999999999999988863 333445689999988776643 344443221 23345555566
Q ss_pred HHHHhCC-ccEEEEEecCC
Q 048507 287 LKKKLSQ-KKFLLVLDDVW 304 (1448)
Q Consensus 287 l~~~l~~-~~~LlVlDdv~ 304 (1448)
+.+.++. ..-++|+|-|-
T Consensus 123 ~e~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 123 AEQLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHHHTTSESEEEEE-CT
T ss_pred HHHHhhcccccEEEEecCc
Confidence 6665654 34589999983
No 326
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.57 E-value=0.13 Score=64.74 Aligned_cols=149 Identities=13% Similarity=0.140 Sum_probs=75.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCcc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKK 295 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 295 (1448)
+-|.++|++|+|||++|+.++... ...| +.++.+. +. ... .......+.+.+.......+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~--~~~f---~~is~~~------~~----~~~-----~g~~~~~~~~~f~~a~~~~P 245 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEA--KVPF---FTISGSD------FV----EMF-----VGVGASRVRDMFEQAKKAAP 245 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHc--CCCE---EEEehHH------hH----Hhh-----hcccHHHHHHHHHHHHhcCC
Confidence 448999999999999999998732 2232 2222221 11 100 01112233333444444568
Q ss_pred EEEEEecCCCCC----------hhhHh----hhcccccC--CCCCcEEEEEcCchhhhhcc-----CCcceEeCCCCCHH
Q 048507 296 FLLVLDDVWNEN----------YNDWV----RLSRPFEA--GAPGSKIIVTTRNQEVADIM-----GTASAYQLKKLSID 354 (1448)
Q Consensus 296 ~LlVlDdv~~~~----------~~~~~----~l~~~l~~--~~~gs~ilvTtR~~~v~~~~-----~~~~~~~l~~l~~~ 354 (1448)
.+|++|+++... ...+. .+...+.. ...+.-+|.||...+..... .-...+.+..-+.+
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHH
Confidence 899999985421 01111 12111222 12344455577655433211 12356778888888
Q ss_pred HHHHHHhhcccCCchhhHHHHHHHHHhcCC
Q 048507 355 DCLAVVAQHSLGSDKLLEEIGKKIVAKCDG 384 (1448)
Q Consensus 355 ~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g 384 (1448)
+-.+++..+.....-...-....+++.+.|
T Consensus 326 ~R~~Il~~~~~~~~l~~~~d~~~la~~t~G 355 (644)
T PRK10733 326 GREQILKVHMRRVPLAPDIDAAIIARGTPG 355 (644)
T ss_pred HHHHHHHHHhhcCCCCCcCCHHHHHhhCCC
Confidence 888888776533221111112345666555
No 327
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.53 E-value=0.22 Score=49.38 Aligned_cols=105 Identities=19% Similarity=0.166 Sum_probs=55.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQK 294 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1448)
-.+++|+|..|.|||||++.+..-. ......+|+.-.. .+.-- ..-..-+...-.+.+.+-.+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~~-~~lS~G~~~rv~laral~~~ 88 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGYF-EQLSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEEE-ccCCHHHHHHHHHHHHHhcC
Confidence 3689999999999999999998632 2223334432100 00000 00111112222345556667
Q ss_pred cEEEEEecCCCC-ChhhHhhhcccccCCCCCcEEEEEcCchhhhh
Q 048507 295 KFLLVLDDVWNE-NYNDWVRLSRPFEAGAPGSKIIVTTRNQEVAD 338 (1448)
Q Consensus 295 ~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 338 (1448)
+-++++|+.-.. +......+...+... +..||++|.+.+...
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 789999987432 222333333333322 246777877765543
No 328
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.53 E-value=0.15 Score=56.55 Aligned_cols=79 Identities=18% Similarity=0.061 Sum_probs=42.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCccccccc--ceEEEEEeCCccCHHHHHHHHHHhcc-CCCCCCCCHHHHHHHHHH
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHF--DLKAWTCVSDDFDVKGLTKTILRSVT-KQTIDDSDLNLLQEELKK 289 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~l~~ 289 (1448)
..+.+|+|.|..|+||||+|+.+..- ..... ..+..++...-..........- .+. ....+.-+.+.+.+.+.+
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l--l~~~~~~g~V~vi~~D~f~~~~~~l~~~g-~~~~~g~P~s~D~~~l~~~L~~ 136 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL--LSRWPEHRKVELITTDGFLHPNQVLKERN-LMKKKGFPESYDMHRLVKFLSD 136 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH--HhhcCCCCceEEEecccccccHHHHHHcC-CccccCCChhccHHHHHHHHHH
Confidence 45689999999999999999877541 11111 1244444443332222222110 010 112345566777777666
Q ss_pred HhCCc
Q 048507 290 KLSQK 294 (1448)
Q Consensus 290 ~l~~~ 294 (1448)
...++
T Consensus 137 Lk~g~ 141 (290)
T TIGR00554 137 LKSGK 141 (290)
T ss_pred HHCCC
Confidence 65544
No 329
>PRK07667 uridine kinase; Provisional
Probab=94.52 E-value=0.049 Score=57.16 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 197 KKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+.+.+++.... +...+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 456666665542 3558999999999999999999987
No 330
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.52 E-value=0.11 Score=54.62 Aligned_cols=80 Identities=25% Similarity=0.229 Sum_probs=43.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCcccccccc---eEEEEEeCCccCHHHHHHHHHHhc----cCCCCCCCCHHHHHHHHHH
Q 048507 217 VIPIIGMGGLGKTTLAQLVYNDKRVQDHFD---LKAWTCVSDDFDVKGLTKTILRSV----TKQTIDDSDLNLLQEELKK 289 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~i~~~l----~~~~~~~~~~~~~~~~l~~ 289 (1448)
||+|.|.+|+||||+|+++...... .... ....+............. .-... ........+.+.+.+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLDDFYDDYHLRD-RKGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGGGGBHHHHHHH-HHHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeecccccccchhh-HhhccccccCCCCccccCHHHHHHHHHH
Confidence 6999999999999999999863221 1111 233333322222222211 11111 1122245577778887777
Q ss_pred HhCCccEEE
Q 048507 290 KLSQKKFLL 298 (1448)
Q Consensus 290 ~l~~~~~Ll 298 (1448)
..+++.+-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 666665433
No 331
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.49 E-value=0.1 Score=59.73 Aligned_cols=133 Identities=15% Similarity=0.061 Sum_probs=70.2
Q ss_pred eEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHH
Q 048507 189 QVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILR 268 (1448)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 268 (1448)
.++|+...+.++.+.+..-.. ...-|.|+|..|+||+++|+.++..... .-...+.+++.... ...+...+..
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s~r--~~~pfv~v~c~~~~-~~~~~~~lfg 79 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCAALN-ENLLDSELFG 79 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhCCc--cCCCeEEEeCCCCC-HHHHHHHHcc
Confidence 588999999888888765321 2245779999999999999999863211 11233456666532 2222222221
Q ss_pred hccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccCCC-----------CCcEEEEEcCc
Q 048507 269 SVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEAGA-----------PGSKIIVTTRN 333 (1448)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~ 333 (1448)
.-... ........ ...+. ....=-|+||+|..-.......+...+..+. ...|||.||..
T Consensus 80 ~~~~~-~~g~~~~~-~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 80 HEAGA-FTGAQKRH-PGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred ccccc-cCCccccc-CCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 11000 00000000 00111 1122357899997765555555554443211 23688888754
No 332
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.49 E-value=0.2 Score=57.34 Aligned_cols=57 Identities=11% Similarity=0.144 Sum_probs=40.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCcccc----cccceEEEEEeCCccCHHHHHHHHHHhc
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKRVQ----DHFDLKAWTCVSDDFDVKGLTKTILRSV 270 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l 270 (1448)
+...++-|+|.+|+|||++|.+++...... ..=..++|++....++...+. ++++.+
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~ 153 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEAR 153 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHc
Confidence 356899999999999999999987643221 111379999998888877654 344444
No 333
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.44 E-value=0.36 Score=59.30 Aligned_cols=63 Identities=17% Similarity=0.014 Sum_probs=41.2
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCc
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDD 256 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 256 (1448)
..++|....+.++.+.+..-.. .-.-|.|+|..|+||+.+|++++.... ..-...+.+++..-
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s~--r~~~pfv~inca~~ 266 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRSP--RGKKPFLALNCASI 266 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeccccC
Confidence 3689999888888777643211 123477999999999999999875321 11123345666554
No 334
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.41 E-value=0.042 Score=60.75 Aligned_cols=96 Identities=23% Similarity=0.258 Sum_probs=48.7
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCC
Q 048507 197 KKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTID 276 (1448)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 276 (1448)
...+++.+... -+-+.++|+.|+|||++++....... ...| .+.-++.+...+...+++.+-..+......
T Consensus 22 ~~~ll~~l~~~-------~~pvLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~ 92 (272)
T PF12775_consen 22 YSYLLDLLLSN-------GRPVLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRGR 92 (272)
T ss_dssp HHHHHHHHHHC-------TEEEEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTTE
T ss_pred HHHHHHHHHHc-------CCcEEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCC
Confidence 34566666553 25678999999999999999886322 1222 233455555444333322211111110000
Q ss_pred CCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhH
Q 048507 277 DSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDW 311 (1448)
Q Consensus 277 ~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~ 311 (1448)
.-. --.+|+.++.+||+.-+..+.|
T Consensus 93 ~~g----------P~~~k~lv~fiDDlN~p~~d~y 117 (272)
T PF12775_consen 93 VYG----------PPGGKKLVLFIDDLNMPQPDKY 117 (272)
T ss_dssp EEE----------EESSSEEEEEEETTT-S---TT
T ss_pred CCC----------CCCCcEEEEEecccCCCCCCCC
Confidence 000 0136888999999965543333
No 335
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.40 E-value=0.12 Score=55.18 Aligned_cols=75 Identities=17% Similarity=0.017 Sum_probs=38.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhcc-CCCCCCCCHHHHHHHHHHHhC
Q 048507 217 VIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVT-KQTIDDSDLNLLQEELKKKLS 292 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~l~~~l~ 292 (1448)
+|+|.|..|+||||+|+.+.........=..+..++...-+.......... .+. ....+..+.+.+.+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~-~~~~~g~p~~~d~~~l~~~L~~l~~ 76 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERG-LMDRKGFPESYDMEALLKFLKDIKS 76 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhh-hhhcCCCcccCCHHHHHHHHHHHHC
Confidence 589999999999999999986321100102244454444332222222211 111 111244566666666655544
No 336
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.39 E-value=0.3 Score=49.80 Aligned_cols=117 Identities=14% Similarity=0.038 Sum_probs=57.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccc-cccc-----ceEEEEEeCCccCHHHHHHHHHHhccC-CCCCCCCHHHHHHHH
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRV-QDHF-----DLKAWTCVSDDFDVKGLTKTILRSVTK-QTIDDSDLNLLQEEL 287 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f-----~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~l 287 (1448)
-.+++|+|..|.|||||++.++..... .+.. ..+.++ .+..... ...+.+.+.. ....-..-+...-.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~--~~tv~~nl~~~~~~~LS~G~~~rv~l 102 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLP--LGTLREQLIYPWDDVLSGGEQQRLAF 102 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccc--cccHHHHhhccCCCCCCHHHHHHHHH
Confidence 368999999999999999999864221 1111 112222 2221111 0112222211 111111222223345
Q ss_pred HHHhCCccEEEEEecCCCC-ChhhHhhhcccccCCCCCcEEEEEcCchhhh
Q 048507 288 KKKLSQKKFLLVLDDVWNE-NYNDWVRLSRPFEAGAPGSKIIVTTRNQEVA 337 (1448)
Q Consensus 288 ~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 337 (1448)
.+.+-.++-++++|+--.. +......+...+... +..||++|.+....
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 5556677888999987432 122222232333222 35677777776554
No 337
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.21 Score=61.56 Aligned_cols=152 Identities=15% Similarity=0.125 Sum_probs=80.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLS 292 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 292 (1448)
...+.+.++|++|.|||.||++++. ....+|-. +... +++... -......+.+.+....+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~-----v~~~--------~l~sk~-----vGesek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFIS-----VKGS--------ELLSKW-----VGESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEE-----eeCH--------HHhccc-----cchHHHHHHHHHHHHHc
Confidence 3556899999999999999999998 34444432 2221 111111 11112233344444446
Q ss_pred CccEEEEEecCCCC------C-h----hhHhhhcccccC--CCCCcEEEEEcCchhhhhc-c----CCcceEeCCCCCHH
Q 048507 293 QKKFLLVLDDVWNE------N-Y----NDWVRLSRPFEA--GAPGSKIIVTTRNQEVADI-M----GTASAYQLKKLSID 354 (1448)
Q Consensus 293 ~~~~LlVlDdv~~~------~-~----~~~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~-~----~~~~~~~l~~l~~~ 354 (1448)
..+..|.+|.++.- . . ....++...+.. ...+..||-||-....... + .-...+.+..-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 78999999998431 0 0 112223323322 2233334445443332221 1 12357888999999
Q ss_pred HHHHHHhhcccCCch--hhHHHHHHHHHhcCC
Q 048507 355 DCLAVVAQHSLGSDK--LLEEIGKKIVAKCDG 384 (1448)
Q Consensus 355 ~a~~l~~~~~~~~~~--~~~~~~~~i~~~~~g 384 (1448)
+..+.|..+...... ...-...++++...|
T Consensus 414 ~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 414 ERLEIFKIHLRDKKPPLAEDVDLEELAEITEG 445 (494)
T ss_pred HHHHHHHHHhcccCCcchhhhhHHHHHHHhcC
Confidence 999999988753322 112233445554444
No 338
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.38 E-value=0.02 Score=58.24 Aligned_cols=42 Identities=21% Similarity=0.125 Sum_probs=30.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccc-cccceEEEEEeCCccC
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQ-DHFDLKAWTCVSDDFD 258 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~ 258 (1448)
..++.+.|+.|+|||.+|+.+++ ... +.....+-++++.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccc
Confidence 46788999999999999999987 333 4445566666655433
No 339
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.34 E-value=0.27 Score=55.11 Aligned_cols=52 Identities=19% Similarity=0.110 Sum_probs=35.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHh
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRS 269 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 269 (1448)
..++.|.|.+|+||||+|.+++.... ..+=..++|++... +..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 46888999999999999999876422 22124578887655 345555555544
No 340
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.59 Score=53.48 Aligned_cols=74 Identities=12% Similarity=0.097 Sum_probs=40.0
Q ss_pred CcEEEE-EcCchhhhhc--cCC---cceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCchHHHHHHHhh-h
Q 048507 324 GSKIIV-TTRNQEVADI--MGT---ASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGLPLAAQTLGGL-L 396 (1448)
Q Consensus 324 gs~ilv-TtR~~~v~~~--~~~---~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~-l 396 (1448)
+-|||| ||-..+-... +.. ..-+.+.-=+.+.-..|+..+..... ...++.+|.+...|.-+.=..++.. |
T Consensus 337 ~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 337 DERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELM 414 (457)
T ss_pred CceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHh
Confidence 346666 6655443321 121 23466777788888888888765432 2345555555555554444444443 4
Q ss_pred ccC
Q 048507 397 RGK 399 (1448)
Q Consensus 397 ~~~ 399 (1448)
..+
T Consensus 415 ~~~ 417 (457)
T KOG0743|consen 415 KNK 417 (457)
T ss_pred hcc
Confidence 433
No 341
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.31 E-value=0.19 Score=54.29 Aligned_cols=49 Identities=20% Similarity=0.166 Sum_probs=31.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTI 266 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 266 (1448)
...++.|.|.+|+||||+|.+++.... +.. ..+++++.. .+..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~-~~g-~~~~yi~~e--~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL-QNG-YSVSYVSTQ--LTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEeCC--CCHHHHHHHH
Confidence 346999999999999999877665321 122 345666633 3455555555
No 342
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.30 E-value=0.17 Score=57.90 Aligned_cols=58 Identities=12% Similarity=0.177 Sum_probs=41.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCcccccc----cceEEEEEeCCccCHHHHHHHHHHhcc
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDH----FDLKAWTCVSDDFDVKGLTKTILRSVT 271 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~ 271 (1448)
+...++-|+|++|+|||++|.+++........ =..++|++....+++..+.+ +++.++
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 35689999999999999999998754322111 14799999988888766544 344443
No 343
>PRK13695 putative NTPase; Provisional
Probab=94.28 E-value=0.049 Score=56.26 Aligned_cols=22 Identities=41% Similarity=0.427 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048507 217 VIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
.++|+|.+|+||||+++.++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998764
No 344
>PTZ00301 uridine kinase; Provisional
Probab=94.26 E-value=0.08 Score=55.85 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47999999999999999998876
No 345
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.26 E-value=0.15 Score=52.61 Aligned_cols=118 Identities=17% Similarity=0.156 Sum_probs=59.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhcc---CCC--CCC--------CCHH
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVT---KQT--IDD--------SDLN 281 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~---~~~--~~~--------~~~~ 281 (1448)
-.+++|+|..|.|||||++.++... ......+++.-....... ..+.+.++ ... ... -+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 3689999999999999999998632 223344443211100000 11111111 000 011 1111
Q ss_pred HHH-HHHHHHhCCccEEEEEecCCCC-ChhhHhhhcccccCC-CCCcEEEEEcCchhhhh
Q 048507 282 LLQ-EELKKKLSQKKFLLVLDDVWNE-NYNDWVRLSRPFEAG-APGSKIIVTTRNQEVAD 338 (1448)
Q Consensus 282 ~~~-~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 338 (1448)
+.+ -.+.+.+..++-++++|+.-.. +......+...+... ..|..||++|.+.....
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 112 2355566678889999997443 222222333333221 13667888888776544
No 346
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.24 E-value=0.17 Score=64.79 Aligned_cols=134 Identities=16% Similarity=0.112 Sum_probs=71.7
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
..++|+...+.++.+.+..-.. ...-|.|+|..|+|||++|+.+++.... .-...+.+++..-. ...+...+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~r--~~~~~v~i~c~~~~-~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSGR--NNRRMVKMNCAAMP-AGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcCC--CCCCeEEEecccCC-hhHhhhhhc
Confidence 4689999999888777654311 2246789999999999999999874211 11234556665432 121222221
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccCC-----------CCCcEEEEEcCc
Q 048507 268 RSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEAG-----------APGSKIIVTTRN 333 (1448)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTtR~ 333 (1448)
...... ........ ...+. ....=.|+||+|..........+...+... ..+.|||.||..
T Consensus 449 g~~~~~-~~g~~~~~-~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 449 GHERGA-FTGASAQR-IGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred Cccccc-ccccccch-hhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 111100 00100000 11111 122346899999776555455554444221 135688888864
No 347
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.19 E-value=0.27 Score=53.59 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=34.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHH
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKT 265 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 265 (1448)
+...++.|.|.+|+|||++|.++.... ...-..++|++... ++.++.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~--~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG--LQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH--HHcCCcEEEEEeeC--CHHHHHHH
Confidence 456899999999999999999876532 12335688888655 44455444
No 348
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.12 E-value=0.064 Score=54.89 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048507 217 VIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999974
No 349
>PTZ00035 Rad51 protein; Provisional
Probab=94.11 E-value=0.37 Score=55.19 Aligned_cols=90 Identities=14% Similarity=0.107 Sum_probs=53.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCccc----ccccceEEEEEeCCccCHHHHHHHHHHhccCCCC---------CCCC
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKRV----QDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTI---------DDSD 279 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~ 279 (1448)
+...++.|+|.+|+|||+++..++...+. .+.=..++|++....++...+ .++++..+.... ...+
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~ 194 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYN 194 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCC
Confidence 45689999999999999999888743221 112235779998777776663 344554433210 1223
Q ss_pred HHHHHHHHH---HHh-CCccEEEEEecC
Q 048507 280 LNLLQEELK---KKL-SQKKFLLVLDDV 303 (1448)
Q Consensus 280 ~~~~~~~l~---~~l-~~~~~LlVlDdv 303 (1448)
.+++.+.+. +.+ ..+--|||+|.+
T Consensus 195 ~e~~~~~l~~~~~~l~~~~~~lvVIDSi 222 (337)
T PTZ00035 195 HEHQMQLLSQAAAKMAEERFALLIVDSA 222 (337)
T ss_pred HHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 333333332 222 234458888887
No 350
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.01 E-value=0.058 Score=57.78 Aligned_cols=21 Identities=33% Similarity=0.635 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 048507 218 IPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 218 v~I~G~gGiGKTtLa~~v~~~ 238 (1448)
|.|.|++|+||||+|+.++..
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999863
No 351
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.98 E-value=0.13 Score=59.07 Aligned_cols=52 Identities=27% Similarity=0.365 Sum_probs=37.2
Q ss_pred cCeEeccchhHHHHHHHHhcC--------CCCCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 187 EAQVYGRETEKKDVVELLLRD--------DLSNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
+..++|.++.++.+..++... +....-..+-|.++|++|+|||++|+.++..
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 356788888888887766532 0001112467889999999999999999873
No 352
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.95 E-value=0.31 Score=60.81 Aligned_cols=88 Identities=20% Similarity=0.165 Sum_probs=55.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCC-ccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCC
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSD-DFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQ 293 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 293 (1448)
.++++++|+.|+||||.+.+++...........+..++... .....+-++...+.++.......+..++.+.+.+ +++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hcC
Confidence 57999999999999999988886332122122455555432 2224556666667676555444566666666654 344
Q ss_pred ccEEEEEecCC
Q 048507 294 KKFLLVLDDVW 304 (1448)
Q Consensus 294 ~~~LlVlDdv~ 304 (1448)
+ =+|++|-.-
T Consensus 264 ~-D~VLIDTAG 273 (767)
T PRK14723 264 K-HLVLIDTVG 273 (767)
T ss_pred C-CEEEEeCCC
Confidence 3 478888875
No 353
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.95 E-value=0.17 Score=50.88 Aligned_cols=117 Identities=15% Similarity=0.090 Sum_probs=59.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccccceEE---EEEeCCccCHHHHHHHHHHh---ccCC-CCCCCC-------HH
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKA---WTCVSDDFDVKGLTKTILRS---VTKQ-TIDDSD-------LN 281 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~---wv~~~~~~~~~~~~~~i~~~---l~~~-~~~~~~-------~~ 281 (1448)
..|-|++..|.||||.|..++-... ...+ .++ |+...........+..+.-. .+.. .....+ ..
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~-~~g~-~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRAL-GHGK-KVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHH-HCCC-eEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 5788888899999999987765221 1122 222 33332223333333332000 0110 000111 12
Q ss_pred HHHHHHHHHhCCccE-EEEEecCCCC---ChhhHhhhcccccCCCCCcEEEEEcCch
Q 048507 282 LLQEELKKKLSQKKF-LLVLDDVWNE---NYNDWVRLSRPFEAGAPGSKIIVTTRNQ 334 (1448)
Q Consensus 282 ~~~~~l~~~l~~~~~-LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 334 (1448)
+..+..++.+...+| ++|||.+-.. ...+.+.+...+.....+..||+|-|+.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 223334445544444 9999998321 1223344555555555678999999975
No 354
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.89 E-value=0.35 Score=53.09 Aligned_cols=90 Identities=13% Similarity=0.122 Sum_probs=50.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCcc-CHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC-
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDF-DVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLS- 292 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~- 292 (1448)
..+++++|.+|+||||+++.+.... ...=..+.+++..... ...+-++...+.++.+.....+...+.+.+...-+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l--~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 3689999999999999999887532 2111245556554321 22222333344444332233455556555544322
Q ss_pred CccEEEEEecCCCC
Q 048507 293 QKKFLLVLDDVWNE 306 (1448)
Q Consensus 293 ~~~~LlVlDdv~~~ 306 (1448)
.+.=++++|..-..
T Consensus 153 ~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 153 ARVDYILIDTAGKN 166 (270)
T ss_pred CCCCEEEEECCCCC
Confidence 24568899998544
No 355
>PRK06547 hypothetical protein; Provisional
Probab=93.88 E-value=0.078 Score=54.06 Aligned_cols=26 Identities=42% Similarity=0.537 Sum_probs=23.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
....+|+|.|++|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999864
No 356
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.87 E-value=0.084 Score=55.94 Aligned_cols=64 Identities=25% Similarity=0.250 Sum_probs=38.3
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHH
Q 048507 196 EKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLT 263 (1448)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 263 (1448)
+..++++.+... .++..+|+|.|+||+|||||..++....+.+++--.++-|+-+.+++--.++
T Consensus 14 ~~~~ll~~l~~~----~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 14 EARELLKRLYPH----TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHHGGG----TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHHhh----cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccc
Confidence 455666666543 2367899999999999999999887744434444455556555555544443
No 357
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.83 E-value=0.34 Score=56.13 Aligned_cols=82 Identities=20% Similarity=0.173 Sum_probs=49.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCC-----CCCCHHHHHHHHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTI-----DDSDLNLLQEELK 288 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 288 (1448)
...++.|.|.+|+|||||+.+++... ...-..++|++... +..++. .-++.++.... ...+.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~--a~~g~~VlYvs~EE--s~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARL--AKRGGKVLYVSGEE--SPEQIK-LRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCc--CHHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 45799999999999999999988632 22224677887643 333332 22344443211 2234455444443
Q ss_pred HHhCCccEEEEEecC
Q 048507 289 KKLSQKKFLLVLDDV 303 (1448)
Q Consensus 289 ~~l~~~~~LlVlDdv 303 (1448)
..+.-+||+|.+
T Consensus 156 ---~~~~~lVVIDSI 167 (372)
T cd01121 156 ---ELKPDLVIIDSI 167 (372)
T ss_pred ---hcCCcEEEEcch
Confidence 235668899988
No 358
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.80 E-value=0.012 Score=61.09 Aligned_cols=154 Identities=16% Similarity=0.133 Sum_probs=90.0
Q ss_pred ccccEEEEecCCCchhh----hhhcccCCccceeeeccccccc----ccC-------cccCCCCCccEEEcccCCCcccc
Q 048507 1159 ESLKSLRVWDCPKLESI----AERLDNNTSLEIIRIAYCENLK----ILP-------SGLHNLRQLQEIEIRRCGNLVSF 1223 (1448)
Q Consensus 1159 ~~L~~L~L~~~~~~~~~----~~~~~~l~~L~~L~Ls~n~~~~----~~p-------~~l~~l~~L~~L~L~~~~~l~~l 1223 (1448)
..++.++||+|.+-+.- ...+.+-.+|+..++|+- +++ .++ ..+-+||+|+..+|++|-.-..+
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 48899999999876543 445667788999988873 332 222 34567999999999998776666
Q ss_pred CCC----CCCCCCccEEEecCccCcccccc-----cc---------CCCCcccceec-ccCCCccccC------CCCCcc
Q 048507 1224 PKG----GLPGAKLTRLEISDCNRLEALPK-----GL---------HNLKSLQELRI-GVELPSLEED------GLPTNL 1278 (1448)
Q Consensus 1224 p~~----~~~~~~L~~L~l~~~~~~~~~p~-----~l---------~~l~~L~~L~l-~~~l~~~~~~------~~~~~L 1278 (1448)
|+. +..-+.|.+|.+++|. +|.+.. .+ .+-|.|++... -|.+.+.+.. .+-.+|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 653 3445889999999876 443321 12 23355565555 3443333221 011466
Q ss_pred ceeeecccccccc-cccccCCccccCCCccEEEEecC
Q 048507 1279 HSLGIRGNMEIWK-STIERGRGFHRFSSLQHLTIEGC 1314 (1448)
Q Consensus 1279 ~~L~l~~n~~~~~-~~~~~~~~~~~l~~L~~L~l~~c 1314 (1448)
+.+.+..|-.-.. .+....-++..+++|+.|||..|
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN 224 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN 224 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc
Confidence 6666666631100 00011112345566666666653
No 359
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.79 E-value=0.034 Score=52.04 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCcccccccce
Q 048507 218 IPIIGMGGLGKTTLAQLVYNDKRVQDHFDL 247 (1448)
Q Consensus 218 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~ 247 (1448)
|.|+|.+|+|||++|+.++. .....|..
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE
Confidence 57999999999999999997 45666643
No 360
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.79 E-value=0.046 Score=45.92 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048507 217 VIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
+|+|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998874
No 361
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=0.38 Score=49.58 Aligned_cols=51 Identities=25% Similarity=0.221 Sum_probs=36.9
Q ss_pred CeEeccchhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 188 AQVYGRETEKKDVVELLLRDDL-------SNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
.++-|-+-+++++.++..-.-. .+-..++-|.++|++|.|||.||++|+++
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 4566788888888777642111 02234677889999999999999999984
No 362
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.75 E-value=0.045 Score=53.29 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 048507 218 IPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 218 v~I~G~gGiGKTtLa~~v~~~ 238 (1448)
|+|.|++|+||||+|+++...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999873
No 363
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.74 E-value=1.3 Score=47.20 Aligned_cols=176 Identities=18% Similarity=0.171 Sum_probs=88.1
Q ss_pred eEeccchhHHHHHHHHhcCC------CCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHH
Q 048507 189 QVYGRETEKKDVVELLLRDD------LSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGL 262 (1448)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 262 (1448)
++.|-+...+.+.++..=.- .......+-|.++|++|.||+-||++|+.... ..| ++++..
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--STF-----FSvSSS------ 200 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--STF-----FSVSSS------ 200 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--Cce-----EEeehH------
Confidence 35577777776666543110 00223478899999999999999999997432 232 344432
Q ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHHh-CCccEEEEEecCCCC-------ChhhHhhhccc----c---cCCCCCcEE
Q 048507 263 TKTILRSVTKQTIDDSDLNLLQEELKKKL-SQKKFLLVLDDVWNE-------NYNDWVRLSRP----F---EAGAPGSKI 327 (1448)
Q Consensus 263 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~-------~~~~~~~l~~~----l---~~~~~gs~i 327 (1448)
+++....+ +.+.+...+-+.. .+++-+|.+|.++.. +.+.-..+... . .....|.-|
T Consensus 201 --DLvSKWmG------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLV 272 (439)
T KOG0739|consen 201 --DLVSKWMG------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLV 272 (439)
T ss_pred --HHHHHHhc------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEE
Confidence 12222111 1233333333332 478899999998431 01111111111 1 123345445
Q ss_pred EEEcCchhhhhcc---CCcceEeCCCCCHHHHH-HHHhhcccCCch-hhHHHHHHHHHhcCCch
Q 048507 328 IVTTRNQEVADIM---GTASAYQLKKLSIDDCL-AVVAQHSLGSDK-LLEEIGKKIVAKCDGLP 386 (1448)
Q Consensus 328 lvTtR~~~v~~~~---~~~~~~~l~~l~~~~a~-~l~~~~~~~~~~-~~~~~~~~i~~~~~g~P 386 (1448)
+-.|..+=+.... .-...+ --||.+..|+ .+|.-+....+. ..++..+++.++..|..
T Consensus 273 LgATNiPw~LDsAIRRRFekRI-YIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 273 LGATNIPWVLDSAIRRRFEKRI-YIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred EecCCCchhHHHHHHHHhhcce-eccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCC
Confidence 5455544332211 011111 1355666664 466666544442 23445666777776643
No 364
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.73 E-value=0.18 Score=55.73 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=30.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCC
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSD 255 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 255 (1448)
+..+++.|.|.+|+|||++|.+++.... ..=..+++++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a--~~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQA--SRGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHH--hCCCcEEEEEecC
Confidence 3568999999999999999999865321 1224678888764
No 365
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=93.71 E-value=0.13 Score=58.95 Aligned_cols=45 Identities=24% Similarity=0.175 Sum_probs=33.0
Q ss_pred EeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 190 VYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
++|+...+.++.+.+..-.. .-.-|.|+|..|+||+++|+.++..
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHh
Confidence 36777777777776654321 2245789999999999999999863
No 366
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.71 E-value=0.46 Score=50.03 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCccEEEEEecCCCC-ChhhHhhhcccccC--CCCCcEEEEEcCchhhhhcc
Q 048507 283 LQEELKKKLSQKKFLLVLDDVWNE-NYNDWVRLSRPFEA--GAPGSKIIVTTRNQEVADIM 340 (1448)
Q Consensus 283 ~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~~ 340 (1448)
..-++.+.+-..+-+|+.|.--.. +...-+.+...+.. ...|..||+.|-+..++..+
T Consensus 149 QRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 149 QRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC
Confidence 334567778888999999975221 11222233333332 23577899999999998754
No 367
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.67 E-value=0.2 Score=51.56 Aligned_cols=23 Identities=43% Similarity=0.629 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
-.+++|+|..|.|||||.+.++.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999986
No 368
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.65 E-value=0.35 Score=49.58 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
-.+++|+|..|+|||||++.+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 36899999999999999999886
No 369
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.61 E-value=0.084 Score=52.08 Aligned_cols=36 Identities=31% Similarity=0.148 Sum_probs=26.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEE
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTC 252 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 252 (1448)
..+|.|.|.+|+||||||+++.. +....-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 36899999999999999999987 3444434455554
No 370
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.59 E-value=0.21 Score=51.80 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
-.+++|+|..|+|||||++.++-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999985
No 371
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.49 E-value=0.4 Score=49.05 Aligned_cols=121 Identities=16% Similarity=0.158 Sum_probs=66.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeC-------------------Ccc------------------
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVS-------------------DDF------------------ 257 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-------------------~~~------------------ 257 (1448)
..|++|+|+.|.|||||.+.+-.= ...-...+|+.-. +.+
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~L---E~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGL---EEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC---cCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 469999999999999999998642 2222334444321 111
Q ss_pred -------CHHHHHHHHHHhccCCCCC-----C-CCHHHHHHHHHHHhCCccEEEEEecCCCCChhhH-hh---hcccccC
Q 048507 258 -------DVKGLTKTILRSVTKQTID-----D-SDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDW-VR---LSRPFEA 320 (1448)
Q Consensus 258 -------~~~~~~~~i~~~l~~~~~~-----~-~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~-~~---l~~~l~~ 320 (1448)
..++...++++.++..... . ..-.+..-+|.+.|.-++-++.+|..-+.-+.++ .+ +...+..
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 1234445555555543211 1 1122333457778888899999999855422221 22 2222322
Q ss_pred CCCCcEEEEEcCchhhhhcc
Q 048507 321 GAPGSKIIVTTRNQEVADIM 340 (1448)
Q Consensus 321 ~~~gs~ilvTtR~~~v~~~~ 340 (1448)
.|-.+||.|-....|...
T Consensus 185 --eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 185 --EGMTMIIVTHEMGFAREV 202 (240)
T ss_pred --cCCeEEEEechhHHHHHh
Confidence 465666666666555543
No 372
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.49 E-value=0.052 Score=55.28 Aligned_cols=25 Identities=48% Similarity=0.474 Sum_probs=22.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDK 239 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~ 239 (1448)
-.+|+|-||-|+||||||+.++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 3689999999999999999999843
No 373
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.48 E-value=0.21 Score=50.15 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
+.|.+.|.+|+||||+|++++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 4678899999999999999987
No 374
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.44 E-value=0.34 Score=56.72 Aligned_cols=86 Identities=19% Similarity=0.208 Sum_probs=47.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCC------CCCCCHHH-----H
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQT------IDDSDLNL-----L 283 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~-----~ 283 (1448)
...++|+|..|+|||||++.+.... .....++|..-.+..++.++....+....... .+...... .
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 4679999999999999999888632 22334455443334455544443333321111 11111111 1
Q ss_pred HHHHHHHh--CCccEEEEEecC
Q 048507 284 QEELKKKL--SQKKFLLVLDDV 303 (1448)
Q Consensus 284 ~~~l~~~l--~~~~~LlVlDdv 303 (1448)
.-.+.+++ +++.+|+++||+
T Consensus 242 a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 12233333 478999999999
No 375
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=0.35 Score=54.42 Aligned_cols=83 Identities=24% Similarity=0.240 Sum_probs=53.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCC-----CCCCHHHHHHHHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTI-----DDSDLNLLQEELK 288 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 288 (1448)
...+|.|-|-+|||||||..+++.+ ...+- .+.+|+-.+ +..++ +--+++++.... ...+.+.+.+.+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEE--S~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEE--SLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCc--CHHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 3478999999999999999999874 33333 677776443 44433 223455553221 2445666555554
Q ss_pred HHhCCccEEEEEecCCC
Q 048507 289 KKLSQKKFLLVLDDVWN 305 (1448)
Q Consensus 289 ~~l~~~~~LlVlDdv~~ 305 (1448)
+ .++-++|+|-+..
T Consensus 166 ~---~~p~lvVIDSIQT 179 (456)
T COG1066 166 Q---EKPDLVVIDSIQT 179 (456)
T ss_pred h---cCCCEEEEeccce
Confidence 3 6788999999843
No 376
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.38 E-value=0.39 Score=57.02 Aligned_cols=89 Identities=16% Similarity=0.125 Sum_probs=48.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCC-ccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSD-DFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLS 292 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 292 (1448)
..+|++++|+.|+||||++.+++.....+..-..+..+.... .....+-++...+..+.......+..+....+. .++
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~-~L~ 333 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALS-ELR 333 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHH-hcc
Confidence 347999999999999999999886332222122345555432 223334455555555543322222222222222 233
Q ss_pred CccEEEEEecCC
Q 048507 293 QKKFLLVLDDVW 304 (1448)
Q Consensus 293 ~~~~LlVlDdv~ 304 (1448)
++ ..+++|-.-
T Consensus 334 d~-d~VLIDTaG 344 (484)
T PRK06995 334 NK-HIVLIDTIG 344 (484)
T ss_pred CC-CeEEeCCCC
Confidence 43 477788874
No 377
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.37 E-value=0.069 Score=57.11 Aligned_cols=25 Identities=40% Similarity=0.566 Sum_probs=22.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
+..+|+|.|.+|+||||||+.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999873
No 378
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.36 E-value=0.19 Score=52.96 Aligned_cols=82 Identities=23% Similarity=0.376 Sum_probs=50.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCc-cCHHHHHHHHHHhccCC-------CCCCCCHH------
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDD-FDVKGLTKTILRSVTKQ-------TIDDSDLN------ 281 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~------ 281 (1448)
..++|.|.+|+|||+|+..+.+.. .-+.++++.+.+. ....++.+++...-..+ ..+.....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 568999999999999999998743 2234477777655 45566666664431111 11111111
Q ss_pred ---HHHHHHHHHhCCccEEEEEecC
Q 048507 282 ---LLQEELKKKLSQKKFLLVLDDV 303 (1448)
Q Consensus 282 ---~~~~~l~~~l~~~~~LlVlDdv 303 (1448)
...+.++. +++.+|+++||+
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETH
T ss_pred cchhhhHHHhh--cCCceeehhhhh
Confidence 12233333 689999999998
No 379
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=93.35 E-value=0.25 Score=61.36 Aligned_cols=63 Identities=16% Similarity=0.117 Sum_probs=44.1
Q ss_pred cCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcc-cccccceEEEEEeCCc
Q 048507 187 EAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKR-VQDHFDLKAWTCVSDD 256 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~ 256 (1448)
...++|....++++.+.+..-.. ....|.|+|..|+|||++|+.+++... ..+. .+.+++..-
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~p---fv~i~c~~~ 258 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSPRAKRP---FVKVNCAAL 258 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCCCCCCC---eEEeecCCC
Confidence 45789999999998888764321 224567999999999999999987421 2223 345566543
No 380
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=93.35 E-value=0.52 Score=52.88 Aligned_cols=53 Identities=17% Similarity=0.132 Sum_probs=33.3
Q ss_pred ceEeCCCCCHHHHHHHHhhcccCCc----hhhHHHHHHHHHhcCCchHHHHHHHhhh
Q 048507 344 SAYQLKKLSIDDCLAVVAQHSLGSD----KLLEEIGKKIVAKCDGLPLAAQTLGGLL 396 (1448)
Q Consensus 344 ~~~~l~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~g~PLal~~~~~~l 396 (1448)
.+++++..+.+|+.++...+....- ..-++--+++.=..+|+|--+..++..+
T Consensus 404 ~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 404 VPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred CccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCCCHHHHHHHHHhc
Confidence 4678899999999887655432110 1113445667777789996555555544
No 381
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.34 E-value=0.11 Score=55.82 Aligned_cols=64 Identities=23% Similarity=0.265 Sum_probs=44.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHH
Q 048507 198 KDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKT 265 (1448)
Q Consensus 198 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 265 (1448)
.+++..+.. ..++..+|+|.|.||+|||||..++....+.+++--.++-|+-+.+++--.++.+
T Consensus 38 ~~ll~~l~p----~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYP----RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhh----cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 345555543 3457789999999999999999988875555566556677777777665544443
No 382
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.34 E-value=0.35 Score=56.47 Aligned_cols=89 Identities=20% Similarity=0.162 Sum_probs=49.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCC-ccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSD-DFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLS 292 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 292 (1448)
...+++++|+.|+||||++..++.........+.+.++.... .....+-+....+.++.......+..++...+.. ++
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~-l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHE-LR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHH-hc
Confidence 457999999999999999988875221111223344443322 2233344555555655544334444444444333 33
Q ss_pred CccEEEEEecCC
Q 048507 293 QKKFLLVLDDVW 304 (1448)
Q Consensus 293 ~~~~LlVlDdv~ 304 (1448)
+ .-++++|...
T Consensus 269 ~-~d~VLIDTaG 279 (420)
T PRK14721 269 G-KHMVLIDTVG 279 (420)
T ss_pred C-CCEEEecCCC
Confidence 3 3457777763
No 383
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.32 E-value=0.035 Score=58.23 Aligned_cols=75 Identities=21% Similarity=0.213 Sum_probs=50.9
Q ss_pred cCCccceEEeccCccccccChhhhccccccEEeccCC--chhhcccccccccCCCCeeeecCCCCccccccccCcccccc
Q 048507 615 GDLRYFRYLNLSGTEIRTLPESVNKLYNLHSLLLEDC--DRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQ 692 (1448)
Q Consensus 615 ~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~ 692 (1448)
-.+..|+.|++.+..++++ ..+-.|++|+.|.++.| .....++.-..++++|++|++++|+ +.. +..+..++.|+
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl~pl~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTLRPLKELE 116 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-ccccchhhhhc
Confidence 3445666666666665544 33447889999999998 5556666666778999999999999 543 34444333333
No 384
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=93.31 E-value=1.3 Score=43.40 Aligned_cols=79 Identities=15% Similarity=0.204 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHhhhhH
Q 048507 4 IGEAILTASVDLLVNKLASVGIRLFPRQDQIRADLMKWKTMLLKIKAVLDDAEEKRT-TDWSVKLWLGDLQNLAYDVEDL 82 (1448)
Q Consensus 4 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~~~-~~~~~~~wl~~lr~~~yd~ed~ 82 (1448)
+++|+++++++.++..+. ....+...++.-+++|...++.|.-++.+.+.-.. .++.-+.=++++.+..-+++++
T Consensus 6 ~~gaalG~~~~eLlk~v~----~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~L 81 (147)
T PF05659_consen 6 VGGAALGAVFGELLKAVI----DASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKEL 81 (147)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHH
Confidence 444555555555554443 44445567788899999999999999999776432 2333367788888889999999
Q ss_pred HHHH
Q 048507 83 LDEF 86 (1448)
Q Consensus 83 ld~~ 86 (1448)
++.|
T Consensus 82 V~k~ 85 (147)
T PF05659_consen 82 VEKC 85 (147)
T ss_pred HHHh
Confidence 9887
No 385
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.30 E-value=0.071 Score=56.82 Aligned_cols=25 Identities=40% Similarity=0.448 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
+...+|+|+|++|+||||||+.++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3458999999999999999999986
No 386
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=93.27 E-value=0.4 Score=58.91 Aligned_cols=64 Identities=13% Similarity=0.107 Sum_probs=45.2
Q ss_pred cCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCc
Q 048507 187 EAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDD 256 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 256 (1448)
...++|+...++++.+.+..-.. ...-|.|+|..|+|||++|+.+++... ..-...+.|++..-
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~ 249 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAAL 249 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccC
Confidence 35689999999998888865321 234678999999999999999987421 11123455666654
No 387
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.25 E-value=0.38 Score=52.83 Aligned_cols=87 Identities=20% Similarity=0.203 Sum_probs=47.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCC-------CCCCHHHHHH
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTI-------DDSDLNLLQE 285 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------~~~~~~~~~~ 285 (1448)
.+..++.|.|.+|+|||||+..+.+. ...... ++.+. ....+..+. +.++..+.+.. --.+...+.+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~--l~~~~~-~~VI~-gD~~t~~Da--~rI~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR--LKDSVP-CAVIE-GDQQTVNDA--ARIRATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--hccCCC-EEEEC-CCcCcHHHH--HHHHhcCCcEEEecCCCCCcCcHHHHHH
Confidence 36799999999999999999999873 333332 22222 121222221 22333332211 1123344555
Q ss_pred HHHHHhCCccEEEEEecCCC
Q 048507 286 ELKKKLSQKKFLLVLDDVWN 305 (1448)
Q Consensus 286 ~l~~~l~~~~~LlVlDdv~~ 305 (1448)
.+........-++|++++..
T Consensus 176 Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHhhcCCcEEEEECCCC
Confidence 55554444446788999853
No 388
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.16 E-value=0.071 Score=53.01 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048507 217 VIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
+|.+.|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
No 389
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.14 E-value=0.1 Score=58.13 Aligned_cols=51 Identities=24% Similarity=0.365 Sum_probs=44.3
Q ss_pred cCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 187 EAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
...|+|.++.++++++.+.......+..-+++.++|+.|.||||+|..+.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999876554556779999999999999999998876
No 390
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.12 E-value=0.13 Score=49.35 Aligned_cols=41 Identities=22% Similarity=0.114 Sum_probs=28.9
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 048507 195 TEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDK 239 (1448)
Q Consensus 195 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 239 (1448)
++.+++.+.+...- ....+|.+.|.-|+||||+++.++...
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34455555554321 123589999999999999999999753
No 391
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.09 E-value=0.29 Score=57.13 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
...+|.++|..|+||||+|..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999988876
No 392
>PRK06762 hypothetical protein; Provisional
Probab=93.06 E-value=0.076 Score=54.39 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
..+|.|.|++|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999863
No 393
>PRK04328 hypothetical protein; Provisional
Probab=93.06 E-value=0.27 Score=53.95 Aligned_cols=42 Identities=14% Similarity=0.174 Sum_probs=31.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCc
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDD 256 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 256 (1448)
+...++.|.|.+|+|||++|.++.... ...-..++|++....
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~--~~~ge~~lyis~ee~ 62 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNG--LQMGEPGVYVALEEH 62 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHH--HhcCCcEEEEEeeCC
Confidence 356899999999999999999877532 122345788887653
No 394
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.05 E-value=0.26 Score=61.75 Aligned_cols=85 Identities=20% Similarity=0.101 Sum_probs=56.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCC-----CCCCHHHHHHHH
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTI-----DDSDLNLLQEEL 287 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 287 (1448)
+..+++-|+|.+|+||||||.+++... ...=..++|++..+.++.. .+++++.+.. .....++....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a--~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANA--QAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 456899999999999999998866522 2223457999887776643 5566654321 233445555556
Q ss_pred HHHhC-CccEEEEEecCC
Q 048507 288 KKKLS-QKKFLLVLDDVW 304 (1448)
Q Consensus 288 ~~~l~-~~~~LlVlDdv~ 304 (1448)
...++ ++.-+||+|.+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 55554 456799999983
No 395
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.03 E-value=0.33 Score=50.51 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
-.+++|.|..|.|||||++.++.-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999863
No 396
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.01 E-value=0.21 Score=51.60 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
..+|+|+|++|+||||+|+.++..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999873
No 397
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=93.00 E-value=0.94 Score=55.57 Aligned_cols=46 Identities=22% Similarity=0.295 Sum_probs=35.5
Q ss_pred eEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 189 QVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
.++|+...+.++.+.+.... .....|.|+|.+|+|||++|+.++..
T Consensus 139 ~lig~s~~~~~l~~~~~~~~----~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLS----RSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred cceecCHHHHHHHHHHHHHh----ccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 58899888888877775421 12345789999999999999999874
No 398
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.98 E-value=0.21 Score=57.34 Aligned_cols=52 Identities=25% Similarity=0.352 Sum_probs=37.7
Q ss_pred cCeEeccchhHHHHHHHHhcC--------CCCCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 187 EAQVYGRETEKKDVVELLLRD--------DLSNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
+..++|.++.++.+..++... .....-..+.+.++|++|+|||++|+.++..
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 456889999888888887541 0001112367899999999999999999873
No 399
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=92.91 E-value=0.14 Score=56.42 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=18.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
+.|.|.|.+|+||||+|+++...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46889999999999999999873
No 400
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.91 E-value=1.2 Score=53.41 Aligned_cols=97 Identities=19% Similarity=0.165 Sum_probs=56.5
Q ss_pred eEeccchhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHH
Q 048507 189 QVYGRETEKKDVVELLLRDDL-------SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKG 261 (1448)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1448)
++-|..+.++.+.+.+.-... .+-....-|.++|++|+|||-||.+++.... .-++++.++ +
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~-------~~fisvKGP----E 736 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN-------LRFISVKGP----E 736 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC-------eeEEEecCH----H
Confidence 444555555555555532210 0112235688999999999999999987322 234666654 2
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCC
Q 048507 262 LTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWN 305 (1448)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 305 (1448)
++.+ .++ ...+.+.+.+.+.-..+++.+.+|..+.
T Consensus 737 lL~K---yIG------aSEq~vR~lF~rA~~a~PCiLFFDEfdS 771 (952)
T KOG0735|consen 737 LLSK---YIG------ASEQNVRDLFERAQSAKPCILFFDEFDS 771 (952)
T ss_pred HHHH---Hhc------ccHHHHHHHHHHhhccCCeEEEeccccc
Confidence 2221 122 1223344445555567899999999854
No 401
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.89 E-value=0.45 Score=51.72 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=30.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCC
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSD 255 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 255 (1448)
+...++.|.|.+|+|||++|.+++... ...-..++|++...
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~--~~~g~~~~~is~e~ 58 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKG--LRDGDPVIYVTTEE 58 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHH--HhcCCeEEEEEccC
Confidence 355899999999999999999876522 12234678887644
No 402
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.85 E-value=0.26 Score=49.88 Aligned_cols=116 Identities=20% Similarity=0.208 Sum_probs=59.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCcc--CHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCC
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDF--DVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQ 293 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 293 (1448)
.+++|+|..|.|||||++.+.... ......+++...... ..... ...+..-. .-..-+...-.+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~-qlS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEEL----RRRIGYVP-QLSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHH----HhceEEEe-eCCHHHHHHHHHHHHHhc
Confidence 689999999999999999998632 233444444322111 11111 11111000 011112222234555566
Q ss_pred ccEEEEEecCCCC-ChhhHhhhcccccC-CCCCcEEEEEcCchhhhhc
Q 048507 294 KKFLLVLDDVWNE-NYNDWVRLSRPFEA-GAPGSKIIVTTRNQEVADI 339 (1448)
Q Consensus 294 ~~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~~~ 339 (1448)
.+-++++|+.... +......+...+.. ...+..++++|.+......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 7889999998533 12222233222221 1124678888877665543
No 403
>PRK05973 replicative DNA helicase; Provisional
Probab=92.81 E-value=0.19 Score=53.73 Aligned_cols=49 Identities=10% Similarity=0.027 Sum_probs=32.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTI 266 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 266 (1448)
...++.|.|.+|+|||++|.+++.... + .=..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a-~-~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM-K-SGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH-h-cCCeEEEEEEeCC--HHHHHHHH
Confidence 457889999999999999999876322 2 2234667765543 44444443
No 404
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=92.78 E-value=0.43 Score=54.07 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=31.9
Q ss_pred eEeCCCCCHHHHHHHHhhcccCCc----hhhHHHHHHHHHhcCCchHHH
Q 048507 345 AYQLKKLSIDDCLAVVAQHSLGSD----KLLEEIGKKIVAKCDGLPLAA 389 (1448)
Q Consensus 345 ~~~l~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~g~PLal 389 (1448)
.+++++++.+|+..++..++-..- ...+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999876643221 233455666777779998644
No 405
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=92.77 E-value=0.51 Score=51.92 Aligned_cols=127 Identities=18% Similarity=0.138 Sum_probs=64.4
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEE---eCCccCHHHHHHHHHHhccC
Q 048507 196 EKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTC---VSDDFDVKGLTKTILRSVTK 272 (1448)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---~~~~~~~~~~~~~i~~~l~~ 272 (1448)
..+.++..+.+. ....-++|+|+.|+||||+.+.++... ......+++. +.......++...+ ..+..
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~---~~~~G~i~~~g~~v~~~d~~~ei~~~~-~~~~q 167 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARIL---STGISQLGLRGKKVGIVDERSEIAGCV-NGVPQ 167 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCcc---CCCCceEEECCEEeecchhHHHHHHHh-ccccc
Confidence 344555555432 235678999999999999999998632 2222333332 11111122222211 11111
Q ss_pred CCC----CC-CCHHHHHHHHHHHh-CCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchhhh
Q 048507 273 QTI----DD-SDLNLLQEELKKKL-SQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQEVA 337 (1448)
Q Consensus 273 ~~~----~~-~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 337 (1448)
... +. ..... ...+...+ ...+-++|+|.+.. ...+..+...+. .|..+|+||-+..+.
T Consensus 168 ~~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~~---~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 168 HDVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGR--EEDVEALLEALH---AGVSIIATAHGRDVE 232 (270)
T ss_pred ccccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence 000 00 01111 11222222 25788999999843 344555544442 477899999876553
No 406
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.69 E-value=0.17 Score=52.30 Aligned_cols=22 Identities=45% Similarity=0.613 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048507 217 VIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
No 407
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.66 E-value=1.1 Score=54.47 Aligned_cols=175 Identities=17% Similarity=0.136 Sum_probs=87.3
Q ss_pred EeccchhHHHHHHHHhcCCCCC---CCCcEEEEEEcCCCCcHHHHHHHHHcCccccccc---ceEEEEEeCCccCHHHHH
Q 048507 190 VYGRETEKKDVVELLLRDDLSN---DGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHF---DLKAWTCVSDDFDVKGLT 263 (1448)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~~~~~~~~ 263 (1448)
..+++..+-.+.+.+...-..+ ..-..++.++|.+|+||||++++++. +...|+ ++.=.++.+...
T Consensus 403 ~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas--~lg~h~~evdc~el~~~s~~~------ 474 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVAS--ELGLHLLEVDCYELVAESASH------ 474 (953)
T ss_pred CccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHH--HhCCceEeccHHHHhhcccch------
Confidence 3467777777777775432211 12356889999999999999999997 333332 111111111111
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCC-----CChhh------Hhhhcc--cccCCCCCcEEEEE
Q 048507 264 KTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWN-----ENYND------WVRLSR--PFEAGAPGSKIIVT 330 (1448)
Q Consensus 264 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-----~~~~~------~~~l~~--~l~~~~~gs~ilvT 330 (1448)
....+...+.+.-...+..|.+-|++- +...+ ...+.. .+....++.-++.|
T Consensus 475 ---------------~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t 539 (953)
T KOG0736|consen 475 ---------------TETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVAT 539 (953)
T ss_pred ---------------hHHHHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEe
Confidence 111122222222223444555444411 10000 111111 11112234444444
Q ss_pred cC-chhhhhccCC--cceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCchH
Q 048507 331 TR-NQEVADIMGT--ASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGLPL 387 (1448)
Q Consensus 331 tR-~~~v~~~~~~--~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~PL 387 (1448)
+. .+.+...... .+.++++.+++++-.++|+.++....-..+...+++++++.|.-+
T Consensus 540 ~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~ 599 (953)
T KOG0736|consen 540 TSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSF 599 (953)
T ss_pred ccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCH
Confidence 43 3333333322 257889999999999999887644433333344566777776544
No 408
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=92.64 E-value=0.44 Score=58.91 Aligned_cols=127 Identities=17% Similarity=0.166 Sum_probs=65.6
Q ss_pred chhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcc-cccccceEEEEEeCCccCHHHHHHHHHHhccC
Q 048507 194 ETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKR-VQDHFDLKAWTCVSDDFDVKGLTKTILRSVTK 272 (1448)
Q Consensus 194 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 272 (1448)
+.++..+...+. .++..|.|.+|.||||+++.+..... ....-...+.+..........+...+...+..
T Consensus 155 d~Qk~Av~~a~~---------~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~ 225 (615)
T PRK10875 155 DWQKVAAAVALT---------RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQ 225 (615)
T ss_pred HHHHHHHHHHhc---------CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhc
Confidence 445555555442 26889999999999999988875321 11111234555555444444444433332211
Q ss_pred CCCCC---CCHHHHHHHHHHHhCC------------cc---EEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcC
Q 048507 273 QTIDD---SDLNLLQEELKKKLSQ------------KK---FLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTR 332 (1448)
Q Consensus 273 ~~~~~---~~~~~~~~~l~~~l~~------------~~---~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR 332 (1448)
-.... .....-...+++.|.. .+ -++|+|.+.-.+...+..+...++ +++|+|+---
T Consensus 226 ~~~~~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD 300 (615)
T PRK10875 226 LPLTDEQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGD 300 (615)
T ss_pred cccchhhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecc
Confidence 00000 0000011223333321 11 289999997666666666766665 4678776543
No 409
>PLN02348 phosphoribulokinase
Probab=92.63 E-value=0.51 Score=53.95 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=23.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
+...+|+|.|.+|+||||+|+.+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999987
No 410
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.63 E-value=0.39 Score=54.43 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
...+++++|++|+||||++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999998864
No 411
>PRK15453 phosphoribulokinase; Provisional
Probab=92.62 E-value=0.44 Score=51.75 Aligned_cols=77 Identities=13% Similarity=0.069 Sum_probs=42.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCcc--CHHHHHHHHH--Hhcc--CCC--CCCCCHHHHHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDF--DVKGLTKTIL--RSVT--KQT--IDDSDLNLLQE 285 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~--~~l~--~~~--~~~~~~~~~~~ 285 (1448)
+..+|+|.|.+|+||||+|+.+... ....-..++.++...-+ +..+.-..+. +.-+ -.. .++.+.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~i--f~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~ 81 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKI--FRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQ 81 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 4579999999999999999988752 21111123334333222 3222222211 1111 112 45667788888
Q ss_pred HHHHHhC
Q 048507 286 ELKKKLS 292 (1448)
Q Consensus 286 ~l~~~l~ 292 (1448)
.+++...
T Consensus 82 ~l~~l~~ 88 (290)
T PRK15453 82 LFREYGE 88 (290)
T ss_pred HHHHHhc
Confidence 7777654
No 412
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.59 E-value=0.067 Score=30.50 Aligned_cols=15 Identities=33% Similarity=0.561 Sum_probs=5.3
Q ss_pred cceEEeccCcccccc
Q 048507 619 YFRYLNLSGTEIRTL 633 (1448)
Q Consensus 619 ~L~~L~Ls~n~i~~l 633 (1448)
+|+.|+|++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 413
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=92.53 E-value=0.47 Score=50.24 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
..+++|+|..|.|||||.+.++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998864
No 414
>PF13479 AAA_24: AAA domain
Probab=92.53 E-value=0.34 Score=51.79 Aligned_cols=72 Identities=22% Similarity=0.239 Sum_probs=41.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC-Cc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLS-QK 294 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~ 294 (1448)
-.+.|+|.+|+||||+|..+ +..++++............ ........+.+++.+.+...-. ..
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----------~k~l~id~E~g~~~~~~~~------~~~~i~i~s~~~~~~~~~~l~~~~~ 67 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----------PKPLFIDTENGSDSLKFLD------DGDVIPITSWEDFLEALDELEEDEA 67 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----------CCeEEEEeCCCccchhhhc------CCCeeCcCCHHHHHHHHHHHHhccC
Confidence 46789999999999999766 3466666654422111110 1222233456666665544322 22
Q ss_pred cE-EEEEecC
Q 048507 295 KF-LLVLDDV 303 (1448)
Q Consensus 295 ~~-LlVlDdv 303 (1448)
.| -||+|.+
T Consensus 68 ~y~tiVIDsi 77 (213)
T PF13479_consen 68 DYDTIVIDSI 77 (213)
T ss_pred CCCEEEEECH
Confidence 33 6788888
No 415
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=92.52 E-value=0.24 Score=49.32 Aligned_cols=21 Identities=38% Similarity=0.607 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048507 217 VIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
+|.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999886
No 416
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.52 E-value=0.17 Score=47.37 Aligned_cols=50 Identities=20% Similarity=0.283 Sum_probs=34.3
Q ss_pred eEeccchhHHHHHHHHhcCCC-CCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 189 QVYGRETEKKDVVELLLRDDL-SNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
.++|..-..+.+++++.+... ....++-|++.+|++|+|||.+|+.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 456666555555555543221 13456789999999999999998888764
No 417
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=92.51 E-value=0.47 Score=55.27 Aligned_cols=85 Identities=19% Similarity=0.235 Sum_probs=50.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCcc-CHHHHHHHHHHhccCC-------CCCCCCHHH----
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDF-DVKGLTKTILRSVTKQ-------TIDDSDLNL---- 282 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 282 (1448)
...++|+|..|+|||||++.++... ..+.++.+-+++.. .+.++..+++..-+.. ..+......
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 4678999999999999999998632 22455666666554 3345555554431111 011111111
Q ss_pred -HHHHHHHHh--CCccEEEEEecC
Q 048507 283 -LQEELKKKL--SQKKFLLVLDDV 303 (1448)
Q Consensus 283 -~~~~l~~~l--~~~~~LlVlDdv 303 (1448)
..-.+.+++ +++.+|+++||+
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCh
Confidence 112233443 588999999999
No 418
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.50 E-value=0.99 Score=46.78 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=35.1
Q ss_pred HHHHHHHhCCccEEEEEecCCCCC-hhhHhhh---cccccCCCCCcEEEEEcCchhhhhccCCcce
Q 048507 284 QEELKKKLSQKKFLLVLDDVWNEN-YNDWVRL---SRPFEAGAPGSKIIVTTRNQEVADIMGTASA 345 (1448)
Q Consensus 284 ~~~l~~~l~~~~~LlVlDdv~~~~-~~~~~~l---~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~ 345 (1448)
...+.+.+--++-+.|||..++-- .+....+ ...+.. .|+-++|.|-.++++....+..+
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~--~~~~~liITHy~rll~~i~pD~v 215 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALRE--EGRGVLIITHYQRLLDYIKPDKV 215 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhc--CCCeEEEEecHHHHHhhcCCCEE
Confidence 344555555678899999986542 2222222 222332 46667777777888877655443
No 419
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.49 E-value=0.19 Score=52.89 Aligned_cols=120 Identities=14% Similarity=0.136 Sum_probs=58.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCH---HHHHHHHHHHh
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDL---NLLQEELKKKL 291 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~---~~~~~~l~~~l 291 (1448)
.+++.|.|+.|.||||+.+.+.... +-.+. ..++.+.. .. -.....+...++......... ..-...+...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~~--G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQI--GCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHHc--CCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 3789999999999999998876321 01110 11111111 00 012222222222221111111 00011122222
Q ss_pred --CCccEEEEEecCCCCC-hhh----HhhhcccccCCCCCcEEEEEcCchhhhhccC
Q 048507 292 --SQKKFLLVLDDVWNEN-YND----WVRLSRPFEAGAPGSKIIVTTRNQEVADIMG 341 (1448)
Q Consensus 292 --~~~~~LlVlDdv~~~~-~~~----~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~ 341 (1448)
..++-|+++|...... ..+ ...+...+.. .|+.+|++|-+.+++..+.
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 3567899999984321 112 1223333333 3788999999988876554
No 420
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=92.46 E-value=0.61 Score=50.72 Aligned_cols=89 Identities=17% Similarity=0.218 Sum_probs=53.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccc--ccccceEEEEEeCCcc-CHHHHHHHHHHhccCCC-------CCCCCHHH--
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRV--QDHFDLKAWTCVSDDF-DVKGLTKTILRSVTKQT-------IDDSDLNL-- 282 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~-- 282 (1448)
-..++|.|..|+|||+|+..+.++... ++.-+.++++-+.+.. ...++..++.+.-.... .+......
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 356799999999999999998875321 1224677888887654 45566666655321110 11111111
Q ss_pred ---HHHHHHHHh---CCccEEEEEecC
Q 048507 283 ---LQEELKKKL---SQKKFLLVLDDV 303 (1448)
Q Consensus 283 ---~~~~l~~~l---~~~~~LlVlDdv 303 (1448)
..-.+.+++ +++++|+++||+
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 112234444 268999999999
No 421
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.44 E-value=0.13 Score=54.80 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 37889999999999999998863
No 422
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.43 E-value=0.63 Score=46.60 Aligned_cols=22 Identities=27% Similarity=0.616 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048507 217 VIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3679999999999999999873
No 423
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=92.42 E-value=0.072 Score=49.56 Aligned_cols=21 Identities=48% Similarity=0.608 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 048507 218 IPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 218 v~I~G~gGiGKTtLa~~v~~~ 238 (1448)
|-|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998863
No 424
>PRK03839 putative kinase; Provisional
Probab=92.40 E-value=0.096 Score=54.48 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048507 217 VIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
.|.|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999974
No 425
>PRK06217 hypothetical protein; Validated
Probab=92.36 E-value=0.2 Score=52.17 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048507 217 VIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
.|.|.|.+|+||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999874
No 426
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=92.32 E-value=0.54 Score=50.28 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHH-HhcccCCHHHHHHHHHHHHHHHhhhhHHHHHH
Q 048507 12 SVDLLVNKLASVGIRLFPRQDQIRADLMKWKTMLLKIKAVLDDA-EEKRTTDWSVKLWLGDLQNLAYDVEDLLDEFQ 87 (1448)
Q Consensus 12 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~a-~~~~~~~~~~~~wl~~lr~~~yd~ed~ld~~~ 87 (1448)
.+.-++..|........-...-++.+++-++.+++.+|.||+.. ++.+..-.....++.++-..||++|+++|.+.
T Consensus 297 yVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 297 YVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred HHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhh
Confidence 34455556655432232233456899999999999999999986 44343333489999999999999999999873
No 427
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.31 E-value=0.25 Score=56.98 Aligned_cols=65 Identities=23% Similarity=0.151 Sum_probs=47.8
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKT 265 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 265 (1448)
..++|+++.+..+..++..+ +-+.+.|.+|+|||++|+.++.. ... ..+++.+.......++...
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~--l~~---~~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARA--LGL---PFVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHH--hCC---CeEEEecCCCCCHHHhcCc
Confidence 34889999999888888765 35789999999999999999973 332 3456666666666554433
No 428
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.30 E-value=0.49 Score=57.08 Aligned_cols=181 Identities=17% Similarity=0.180 Sum_probs=89.4
Q ss_pred ccCeEeccchhHHHH---HHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCH
Q 048507 186 TEAQVYGRETEKKDV---VELLLRDDL---SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDV 259 (1448)
Q Consensus 186 ~~~~~vGr~~~~~~l---~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 259 (1448)
.-.+..|.++.++++ ++.|.+... -+..-++-|.++|++|.|||.||++++-...+- | .+.|..
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS--- 217 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGS--- 217 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccch---
Confidence 345678987666555 444543210 011335678999999999999999999854432 2 122221
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCC----------hhhHh----hhcccccCCC--C
Q 048507 260 KGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNEN----------YNDWV----RLSRPFEAGA--P 323 (1448)
Q Consensus 260 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~~~~----~l~~~l~~~~--~ 323 (1448)
+.++.. -......+.+.+.+..+.-+++|++|.++... .++++ ++......+. .
T Consensus 218 -----~FVemf-----VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~ 287 (596)
T COG0465 218 -----DFVEMF-----VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNE 287 (596)
T ss_pred -----hhhhhh-----cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCC
Confidence 111111 01112233344455556668999999874321 12232 2333333333 2
Q ss_pred CcEEEEEcCchhhhhcc--C---CcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchH
Q 048507 324 GSKIIVTTRNQEVADIM--G---TASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPL 387 (1448)
Q Consensus 324 gs~ilvTtR~~~v~~~~--~---~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PL 387 (1448)
|-.|+..|-..+|.... . -...+.++.-+...-.++++-|+.... ....+ ...|++.+-|.--
T Consensus 288 gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vd-l~~iAr~tpGfsG 356 (596)
T COG0465 288 GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVD-LKKIARGTPGFSG 356 (596)
T ss_pred ceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCC-HHHHhhhCCCccc
Confidence 33333333333443221 1 223455666665666666765553332 11111 1226777766543
No 429
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.27 E-value=0.44 Score=46.20 Aligned_cols=79 Identities=22% Similarity=0.262 Sum_probs=28.6
Q ss_pred cccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCC-CCCCCCccEEEecCccCccccc-cccCCCCc
Q 048507 1179 LDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKG-GLPGAKLTRLEISDCNRLEALP-KGLHNLKS 1256 (1448)
Q Consensus 1179 ~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~-~~~~~~L~~L~l~~~~~~~~~p-~~l~~l~~ 1256 (1448)
|.++++|+.+.+.. .....-...|.++++|+.+.+.+. +..++.. +..+++|+.+.+.+ . ...++ ..|..+++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-N-LKSIGDNAFSNCTN 82 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-T-T-EE-TTTTTT-TT
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-c-cccccccccccccc
Confidence 44555555555542 222212234455555555555542 4444432 22234555555543 1 22222 23444555
Q ss_pred ccceec
Q 048507 1257 LQELRI 1262 (1448)
Q Consensus 1257 L~~L~l 1262 (1448)
|+.+++
T Consensus 83 l~~i~~ 88 (129)
T PF13306_consen 83 LKNIDI 88 (129)
T ss_dssp ECEEEE
T ss_pred cccccc
Confidence 555555
No 430
>PRK04040 adenylate kinase; Provisional
Probab=92.26 E-value=0.11 Score=53.98 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+|+|+|++|+||||+++.+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 6899999999999999999987
No 431
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=92.25 E-value=0.42 Score=55.04 Aligned_cols=106 Identities=23% Similarity=0.288 Sum_probs=54.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQ 293 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 293 (1448)
.++-+-|||..|.|||.|.-.+|+...++.. ......+...++-+.+.........+.. +.+.+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k----------~R~HFh~Fm~~vh~~l~~~~~~~~~l~~----va~~l~~ 126 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRK----------RRVHFHEFMLDVHSRLHQLRGQDDPLPQ----VADELAK 126 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccc----------ccccccHHHHHHHHHHHHHhCCCccHHH----HHHHHHh
Confidence 5678999999999999999999985433111 0111122233333332211112222333 3344456
Q ss_pred ccEEEEEecCCCCChhhHhhhcccccC-CCCCcEEEEEcCch
Q 048507 294 KKFLLVLDDVWNENYNDWVRLSRPFEA-GAPGSKIIVTTRNQ 334 (1448)
Q Consensus 294 ~~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~~ 334 (1448)
+..||.||.+.-.+..+---+.+.|.. ...|. |||+|.+.
T Consensus 127 ~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 127 ESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNR 167 (362)
T ss_pred cCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCC
Confidence 677999999754433332222222221 22455 55555554
No 432
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.22 E-value=0.12 Score=54.36 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
+.++|+|.|++|+||||+|+.++.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999986
No 433
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.20 E-value=0.44 Score=50.23 Aligned_cols=41 Identities=27% Similarity=0.279 Sum_probs=27.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccc--------ceEEEEEeCCc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQDHF--------DLKAWTCVSDD 256 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~ 256 (1448)
.++.|.|++|+|||+++..++.+......| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 488899999999999998887643222111 36788887665
No 434
>PRK00625 shikimate kinase; Provisional
Probab=92.19 E-value=0.1 Score=53.22 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048507 217 VIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.|.++||+|+||||+|+.+++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 435
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=92.17 E-value=0.77 Score=53.16 Aligned_cols=23 Identities=43% Similarity=0.583 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
-.+++|+|+.|.||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 35899999999999999999863
No 436
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.09 E-value=0.37 Score=49.17 Aligned_cols=118 Identities=19% Similarity=0.097 Sum_probs=60.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEe---CCccCHHHHHHHH--HHhc--cCC-CCCCCCH------
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCV---SDDFDVKGLTKTI--LRSV--TKQ-TIDDSDL------ 280 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~~~~~~~~~~i--~~~l--~~~-~~~~~~~------ 280 (1448)
...|.|+|..|-||||.|..++-. ..++=..+..+.. .........+..+ +... +.. .....+.
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~r--a~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALR--AVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHH--HHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 468899999999999999877652 2211112333332 2122333333331 0000 110 0111111
Q ss_pred -HHHHHHHHHHhCCcc-EEEEEecCCCC---ChhhHhhhcccccCCCCCcEEEEEcCch
Q 048507 281 -NLLQEELKKKLSQKK-FLLVLDDVWNE---NYNDWVRLSRPFEAGAPGSKIIVTTRNQ 334 (1448)
Q Consensus 281 -~~~~~~l~~~l~~~~-~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 334 (1448)
....+..++.+.+.+ =+||||.+-.. ...+.+++...+.....+..||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 122233444554444 49999998321 1233445555555555678999999975
No 437
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=92.01 E-value=0.11 Score=66.25 Aligned_cols=111 Identities=14% Similarity=0.182 Sum_probs=53.6
Q ss_pred CccEEEEEecCCCCC-hhhHhhh----cccccCCCCCcEEEEEcCchhhhhccCCcceEeCCCCCHH-HHHHHHhhcccC
Q 048507 293 QKKFLLVLDDVWNEN-YNDWVRL----SRPFEAGAPGSKIIVTTRNQEVADIMGTASAYQLKKLSID-DCLAVVAQHSLG 366 (1448)
Q Consensus 293 ~~~~LlVlDdv~~~~-~~~~~~l----~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~l~~~-~a~~l~~~~~~~ 366 (1448)
..+-|+++|..-... ..+...+ ...+. ..|+.+|+||-..++.........+....+..+ +... +..+...
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p~Ykl~~ 477 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-PTYKLLK 477 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-eEEEECC
Confidence 478999999985432 2222222 22332 257899999998876443211111111111111 1111 1111111
Q ss_pred CchhhHHHHHHHHHhcCCchHHHHHHHhhhccCCChhHHHHHH
Q 048507 367 SDKLLEEIGKKIVAKCDGLPLAAQTLGGLLRGKCDRSDWEDLL 409 (1448)
Q Consensus 367 ~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w~~~~ 409 (1448)
. ..-...|-+|++++ |+|-.+.--|..+... .....+.++
T Consensus 478 G-~~g~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li 517 (771)
T TIGR01069 478 G-IPGESYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLI 517 (771)
T ss_pred C-CCCCcHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHH
Confidence 1 11134566677776 7888777777766543 233444443
No 438
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.00 E-value=0.06 Score=57.72 Aligned_cols=23 Identities=22% Similarity=0.122 Sum_probs=20.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVY 236 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~ 236 (1448)
..+++.|+|+.|.||||+.+.+.
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~ 51 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIG 51 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHH
Confidence 35799999999999999988865
No 439
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=91.98 E-value=0.35 Score=54.74 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 048507 218 IPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 218 v~I~G~gGiGKTtLa~~v~~~ 238 (1448)
+.+.|++|+||||+|+.+...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999864
No 440
>PTZ00185 ATPase alpha subunit; Provisional
Probab=91.96 E-value=0.88 Score=53.47 Aligned_cols=91 Identities=16% Similarity=0.160 Sum_probs=51.4
Q ss_pred CcEEEEEEcCCCCcHHHHH-HHHHcCcccc-----cccceEEEEEeCCccCHHHHHHHHHHhccC-CC-------CCCCC
Q 048507 214 GFSVIPIIGMGGLGKTTLA-QLVYNDKRVQ-----DHFDLKAWTCVSDDFDVKGLTKTILRSVTK-QT-------IDDSD 279 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~-----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~-------~~~~~ 279 (1448)
+-..++|.|..|+|||+|| ..+.+...+. +.-+.++++-+++..+...-+.+.+++-+. +. .+...
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 3457899999999999997 5566643221 233567888887765443334444443331 10 01111
Q ss_pred HHH-----HHHHHHHHh--CCccEEEEEecCC
Q 048507 280 LNL-----LQEELKKKL--SQKKFLLVLDDVW 304 (1448)
Q Consensus 280 ~~~-----~~~~l~~~l--~~~~~LlVlDdv~ 304 (1448)
..+ ..-.+.+++ +++.+|+|+||+-
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 111 111233333 4789999999993
No 441
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.95 E-value=0.012 Score=59.62 Aligned_cols=87 Identities=17% Similarity=0.198 Sum_probs=76.9
Q ss_pred ccccC-ccccCCccceEEeccCccccccChhhhccccccEEeccCCchhhcccccccccCCCCeeeecCCCCcccccccc
Q 048507 607 IDELP-DSIGDLRYFRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGI 685 (1448)
Q Consensus 607 i~~lp-~~i~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i 685 (1448)
++++| ..+.....-+.||++.|++..+-..|+.++.|..||++.| .+..+|.+++.+..++++++..|. ....|..+
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 44555 4566778899999999999999999999999999999985 788999999999999999998888 89999999
Q ss_pred Cccccccccc
Q 048507 686 GRLTSLQTLC 695 (1448)
Q Consensus 686 ~~L~~L~~L~ 695 (1448)
+.++.++.++
T Consensus 108 ~k~~~~k~~e 117 (326)
T KOG0473|consen 108 KKEPHPKKNE 117 (326)
T ss_pred cccCCcchhh
Confidence 9999998873
No 442
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=91.95 E-value=0.98 Score=48.78 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..+++|+|..|.|||||++.++-
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 36899999999999999999975
No 443
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=91.95 E-value=0.42 Score=50.31 Aligned_cols=22 Identities=27% Similarity=0.220 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
++++|+|+.|.||||+.+.+.-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999988864
No 444
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=91.92 E-value=0.22 Score=55.87 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=34.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHH
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKT 265 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 265 (1448)
.+++.+.|.||+||||+|.+.+-. .......++-|+.....+...++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~--lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVK--LAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHH--HHHcCCcEEEEEeCCCCchHhhhcc
Confidence 478999999999999999886642 2222244777777776666655443
No 445
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=91.86 E-value=0.13 Score=50.63 Aligned_cols=20 Identities=45% Similarity=0.748 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 048507 217 VIPIIGMGGLGKTTLAQLVY 236 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~ 236 (1448)
.|+|.|.+|+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999998886
No 446
>PRK11823 DNA repair protein RadA; Provisional
Probab=91.84 E-value=0.73 Score=55.13 Aligned_cols=82 Identities=18% Similarity=0.189 Sum_probs=48.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCC-----CCCCHHHHHHHHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTI-----DDSDLNLLQEELK 288 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 288 (1448)
...++.|.|.+|+|||||+.+++.... ..-..++|++... +..++... ++.++.... ...+.+.+.+.+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ee--s~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEE--SASQIKLR-AERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccc--cHHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 457999999999999999999886322 2223578887644 33333222 344443211 1234444444443
Q ss_pred HHhCCccEEEEEecC
Q 048507 289 KKLSQKKFLLVLDDV 303 (1448)
Q Consensus 289 ~~l~~~~~LlVlDdv 303 (1448)
+ .+.-+||+|.+
T Consensus 154 ~---~~~~lVVIDSI 165 (446)
T PRK11823 154 E---EKPDLVVIDSI 165 (446)
T ss_pred h---hCCCEEEEech
Confidence 2 34557888887
No 447
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=91.80 E-value=0.51 Score=58.32 Aligned_cols=22 Identities=32% Similarity=0.261 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
++..|.|.+|.||||++..+..
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~ 182 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLL 182 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHH
Confidence 6889999999999999888765
No 448
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=91.79 E-value=0.19 Score=54.59 Aligned_cols=87 Identities=22% Similarity=0.211 Sum_probs=50.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCC---------------CCC-
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQ---------------TID- 276 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~---------------~~~- 276 (1448)
+...++.|.|.+|+|||++|.+++.....+ .=..++|++.... ..++.+.+- .++.. ...
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~-~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKN-FGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHH-HT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhh-cCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 456799999999999999999877532111 0235788887554 344444332 33211 000
Q ss_pred ----CCCHHHHHHHHHHHhCC-ccEEEEEecC
Q 048507 277 ----DSDLNLLQEELKKKLSQ-KKFLLVLDDV 303 (1448)
Q Consensus 277 ----~~~~~~~~~~l~~~l~~-~~~LlVlDdv 303 (1448)
..+.+.+...+.+.++. +...+|+|.+
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 34566666666665543 3467888876
No 449
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.78 E-value=1.3 Score=43.40 Aligned_cols=84 Identities=14% Similarity=0.137 Sum_probs=50.0
Q ss_pred cCHHHHHHHHHHhccCCCC------CCCCHHHHHHHHHHHhCCccEEEEEecCC----CCChhhHhhhcccccCCCCCcE
Q 048507 257 FDVKGLTKTILRSVTKQTI------DDSDLNLLQEELKKKLSQKKFLLVLDDVW----NENYNDWVRLSRPFEAGAPGSK 326 (1448)
Q Consensus 257 ~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~~~~LlVlDdv~----~~~~~~~~~l~~~l~~~~~gs~ 326 (1448)
.+.....+..+.+++...- .-..-++..-.+.+.+...+-+++-|.-- ...-....++.-.+ ....|+.
T Consensus 121 ~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~l-nre~G~T 199 (228)
T COG4181 121 ADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFAL-NRERGTT 199 (228)
T ss_pred ccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHH-hhhcCce
Confidence 3566677788888765321 12233444456777888888888888652 22222222332222 2346888
Q ss_pred EEEEcCchhhhhccC
Q 048507 327 IIVTTRNQEVADIMG 341 (1448)
Q Consensus 327 ilvTtR~~~v~~~~~ 341 (1448)
.+..|.++.++..+.
T Consensus 200 lVlVTHD~~LA~Rc~ 214 (228)
T COG4181 200 LVLVTHDPQLAARCD 214 (228)
T ss_pred EEEEeCCHHHHHhhh
Confidence 888888888887653
No 450
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.77 E-value=0.3 Score=50.76 Aligned_cols=56 Identities=25% Similarity=0.218 Sum_probs=39.3
Q ss_pred CeEeccchhHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccc
Q 048507 188 AQVYGRETEKKDVVELLLRDDLS-------NDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHF 245 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f 245 (1448)
.++-|-.++++++.+...-..-. +-...+-|.++|++|.|||-+|++|++ +....|
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf 239 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF 239 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE
Confidence 45567888888888766432110 123456788999999999999999998 444444
No 451
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=91.74 E-value=0.11 Score=53.47 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048507 217 VIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
+|+|.|.+|+||||+|+.++..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 452
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=91.70 E-value=0.98 Score=54.09 Aligned_cols=83 Identities=14% Similarity=0.150 Sum_probs=47.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCC-----CCCCCHHHHHHHH
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQT-----IDDSDLNLLQEEL 287 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 287 (1448)
....++.|.|.+|+|||||+.+++.... ..-..++|++... +..++... ++.++... ....+.+.+...+
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a--~~g~kvlYvs~EE--s~~qi~~r-a~rlg~~~~~l~~~~e~~~~~I~~~i 166 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLA--KNQMKVLYVSGEE--SLQQIKMR-AIRLGLPEPNLYVLSETNWEQICANI 166 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHH--hcCCcEEEEECcC--CHHHHHHH-HHHcCCChHHeEEcCCCCHHHHHHHH
Confidence 3557999999999999999999876322 1113577887543 33333221 23333211 1223444444443
Q ss_pred HHHhCCccEEEEEecC
Q 048507 288 KKKLSQKKFLLVLDDV 303 (1448)
Q Consensus 288 ~~~l~~~~~LlVlDdv 303 (1448)
.+ .+.-++|+|.+
T Consensus 167 ~~---~~~~~vVIDSI 179 (454)
T TIGR00416 167 EE---ENPQACVIDSI 179 (454)
T ss_pred Hh---cCCcEEEEecc
Confidence 32 34557888887
No 453
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.69 E-value=0.11 Score=29.60 Aligned_cols=17 Identities=35% Similarity=0.655 Sum_probs=11.6
Q ss_pred CceeEEEeCCCCccccC
Q 048507 595 QRLRVFSLRGYRIDELP 611 (1448)
Q Consensus 595 ~~L~~L~L~~n~i~~lp 611 (1448)
++|+.|++++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999999887
No 454
>CHL00206 ycf2 Ycf2; Provisional
Probab=91.68 E-value=0.61 Score=62.91 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
..+-|.++|++|+|||.||++++.+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHh
Confidence 4567889999999999999999985
No 455
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=91.67 E-value=0.26 Score=61.05 Aligned_cols=75 Identities=17% Similarity=0.108 Sum_probs=55.7
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.+++|.++.++.+..++... +.+.++|.+|+||||+|+.++... ....++..+|..- ...+....++.+.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHHHH
Confidence 46889998888888877542 368899999999999999998742 2334577788765 4446777777777
Q ss_pred HhccC
Q 048507 268 RSVTK 272 (1448)
Q Consensus 268 ~~l~~ 272 (1448)
..++.
T Consensus 101 ~~~G~ 105 (637)
T PRK13765 101 AGKGK 105 (637)
T ss_pred HhcCH
Confidence 66654
No 456
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=91.66 E-value=1.5 Score=46.76 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
-.+++|.|..|+|||||++.++.
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999974
No 457
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=91.65 E-value=0.32 Score=54.03 Aligned_cols=50 Identities=20% Similarity=0.139 Sum_probs=38.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHH
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTI 266 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 266 (1448)
+..+++.|+|.+|+|||++|.++.. +.......++||+.... ..++.+.+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~--~~~l~~~~ 70 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES--PEELLENA 70 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC--HHHHHHHH
Confidence 5678999999999999999999887 44455778999987764 44444443
No 458
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=91.62 E-value=1.6 Score=48.12 Aligned_cols=134 Identities=10% Similarity=0.048 Sum_probs=72.6
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccC----
Q 048507 197 KKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTK---- 272 (1448)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~---- 272 (1448)
-+++...+..+ .-.+...++|+.|+||+++|..++...-... ... ..+.+......
T Consensus 6 ~~~L~~~i~~~-----rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~------------~~~---~c~~~~~~~HPD~~~ 65 (290)
T PRK05917 6 WEALIQRVRDQ-----KVPSAIILHGQDLSNLSARAYELASLILKET------------SPE---AAYKISQKIHPDIHE 65 (290)
T ss_pred HHHHHHHHHcC-----CcCeeEeeECCCCCcHHHHHHHHHHHHhCCC------------Ccc---HHHHHhcCCCCCEEE
Confidence 45566666443 2356788999999999999988875321100 000 00111111000
Q ss_pred ---CCC-CCCCHHHHHHHHHHHh-----CCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCc-hhhhhcc-C
Q 048507 273 ---QTI-DDSDLNLLQEELKKKL-----SQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRN-QEVADIM-G 341 (1448)
Q Consensus 273 ---~~~-~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~~-~ 341 (1448)
... ....++++. .+.+.+ .++.-++|+|+++......+..+...+.....++.+|++|.+ ..+.... .
T Consensus 66 i~p~~~~~~I~idqiR-~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~S 144 (290)
T PRK05917 66 FSPQGKGRLHSIETPR-AIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRS 144 (290)
T ss_pred EecCCCCCcCcHHHHH-HHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHh
Confidence 000 012234332 233332 245568899999887777788887777766667776666655 4444332 2
Q ss_pred CcceEeCCCC
Q 048507 342 TASAYQLKKL 351 (1448)
Q Consensus 342 ~~~~~~l~~l 351 (1448)
-...+.+.++
T Consensus 145 Rcq~~~~~~~ 154 (290)
T PRK05917 145 RSLSIHIPME 154 (290)
T ss_pred cceEEEccch
Confidence 2345666655
No 459
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=91.61 E-value=1.1 Score=50.53 Aligned_cols=85 Identities=20% Similarity=0.268 Sum_probs=47.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeC-CccCHHHHHHHHHHhccCC-------CCCCCCHHH----
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVS-DDFDVKGLTKTILRSVTKQ-------TIDDSDLNL---- 282 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 282 (1448)
...++|+|..|+|||||.+.+..... . +..+..-+. +..+..++.......-... ..+......
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~---~-~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT---A-DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC---C-CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 35789999999999999999887322 1 223333333 3345555555555432211 111111111
Q ss_pred -HHHHHHHHh--CCccEEEEEecC
Q 048507 283 -LQEELKKKL--SQKKFLLVLDDV 303 (1448)
Q Consensus 283 -~~~~l~~~l--~~~~~LlVlDdv 303 (1448)
..-.+.+++ +++.+|+++||+
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccc
Confidence 112223333 588999999998
No 460
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=91.61 E-value=0.25 Score=51.13 Aligned_cols=43 Identities=28% Similarity=0.356 Sum_probs=28.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHH
Q 048507 217 VIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVK 260 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1448)
.|+|+|-||+||||+|..++....-++.| .+.-|++..++++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~-~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGY-NVLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCc-eEEEEeCCCCCChH
Confidence 58999999999999998855422222224 35667766655543
No 461
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=91.58 E-value=0.29 Score=53.65 Aligned_cols=55 Identities=24% Similarity=0.282 Sum_probs=40.0
Q ss_pred cCeEeccchhHH---HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccc
Q 048507 187 EAQVYGRETEKK---DVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHF 245 (1448)
Q Consensus 187 ~~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f 245 (1448)
.+.+||..+..+ -+++++.+.. -..+.|.|+|++|.|||+||..+.+..-..-+|
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk----~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF 95 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGK----MAGRGILIVGPPGTGKTALAMGIARELGEDVPF 95 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCc----ccccEEEEECCCCCcHHHHHHHHHHHhCCCCCc
Confidence 456899876655 3556665432 356889999999999999999999854444455
No 462
>PRK00131 aroK shikimate kinase; Reviewed
Probab=91.56 E-value=0.14 Score=53.02 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
...|.|+|++|+||||+|++++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999873
No 463
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=91.53 E-value=0.21 Score=53.27 Aligned_cols=21 Identities=29% Similarity=0.331 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 048507 216 SVIPIIGMGGLGKTTLAQLVY 236 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~ 236 (1448)
++++|.|+.|.||||+.+.+.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~ 51 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVA 51 (216)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 789999999999999999975
No 464
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=91.49 E-value=0.33 Score=53.51 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 048507 218 IPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 218 v~I~G~gGiGKTtLa~~v~~~ 238 (1448)
|.++|++|+||||+|+++...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999863
No 465
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.45 E-value=0.12 Score=54.70 Aligned_cols=21 Identities=43% Similarity=0.602 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048507 217 VIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
+|+|.|..|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 466
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=91.44 E-value=1.3 Score=54.06 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=34.0
Q ss_pred eEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 189 QVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
.++|+...++++...+..-. ... ..|.|+|..|+||+++|+.+...
T Consensus 140 ~lig~s~~~~~l~~~i~~~a---~~~-~~vli~Ge~GtGK~~lA~~ih~~ 185 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIA---PSD-ITVLLLGESGTGKEVLARALHQL 185 (445)
T ss_pred ceeecCHHHHHHHHHHHHHh---CCC-CCEEEECCCCcCHHHHHHHHHHh
Confidence 47888888888777775421 122 33559999999999999999863
No 467
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=91.43 E-value=0.65 Score=54.34 Aligned_cols=86 Identities=20% Similarity=0.185 Sum_probs=47.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCC-------CCCCCCHHH-----
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQ-------TIDDSDLNL----- 282 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 282 (1448)
...++|.|..|+|||||++.+....+ ....++...-.+...+.++....+..-+.. ..+......
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 36789999999999999998886322 222233322233334555555444332111 011111111
Q ss_pred HHHHHHHHh--CCccEEEEEecC
Q 048507 283 LQEELKKKL--SQKKFLLVLDDV 303 (1448)
Q Consensus 283 ~~~~l~~~l--~~~~~LlVlDdv 303 (1448)
..-.+.+++ +++.+|+++||+
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 112234444 578999999999
No 468
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.43 E-value=1.6 Score=46.72 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
..+++|+|..|.|||||++.++-.
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 368999999999999999999853
No 469
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=91.39 E-value=1.6 Score=43.95 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 048507 218 IPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 218 v~I~G~gGiGKTtLa~~v~~~ 238 (1448)
|+|+|..|+|||||.+.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999875
No 470
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=91.38 E-value=4.7 Score=44.81 Aligned_cols=70 Identities=14% Similarity=0.191 Sum_probs=47.2
Q ss_pred CccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCch-hhhhccCC-cceEeCCCCCHHHHHHHHhhc
Q 048507 293 QKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQ-EVADIMGT-ASAYQLKKLSIDDCLAVVAQH 363 (1448)
Q Consensus 293 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~~-~~~~~l~~l~~~~a~~l~~~~ 363 (1448)
+++-++|+|+++.........+...+.....++.+|++|.+. .+...... ...+.+.+ +.++..+.+...
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~~ 174 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQK 174 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHHc
Confidence 556789999998877777888887777766667777766554 44443322 35677766 666666666543
No 471
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=91.33 E-value=0.92 Score=49.92 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
..+++|+|..|+|||||++.++--
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999853
No 472
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=91.33 E-value=0.8 Score=53.89 Aligned_cols=89 Identities=18% Similarity=0.226 Sum_probs=52.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCcc-CHHHHHHHHHHhccCC-------CCCCCCHHH---
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDF-DVKGLTKTILRSVTKQ-------TIDDSDLNL--- 282 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 282 (1448)
.-..++|.|..|+|||||+..++...... +=+.++++-+.+.. .+.++..++...-... ..+......
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 34678999999999999998876532211 11356677776543 4556666666532111 011111111
Q ss_pred --HHHHHHHHh---CCccEEEEEecC
Q 048507 283 --LQEELKKKL---SQKKFLLVLDDV 303 (1448)
Q Consensus 283 --~~~~l~~~l---~~~~~LlVlDdv 303 (1448)
..-.+.+++ +++.+|+++|++
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 122344444 578999999999
No 473
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=91.29 E-value=0.67 Score=52.53 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 197 KKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
...+.+.+... .+...+|+|.|.+|+||||++..+...
T Consensus 42 ~~~l~~~~~~~----~~~~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 42 AQELLDALLPH----TGNALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred HHHHHHHHhhc----CCCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34455555321 246789999999999999999987763
No 474
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=91.27 E-value=1.1 Score=50.89 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..+++|.|+.|.|||||.+.+..
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~G 50 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITG 50 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999975
No 475
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=91.26 E-value=0.21 Score=50.45 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4679999999999999999999863
No 476
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=91.24 E-value=0.46 Score=51.13 Aligned_cols=77 Identities=16% Similarity=0.091 Sum_probs=41.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCcc--CHHHHHHHHHHh----ccCCC--CCCCCHHHHHHHHH
Q 048507 217 VIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDF--DVKGLTKTILRS----VTKQT--IDDSDLNLLQEELK 288 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~----l~~~~--~~~~~~~~~~~~l~ 288 (1448)
+|+|.|..|+||||+|+++....+..+ ..+..++...-+ +-.+.-..+..+ ..-.. .++.+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 589999999999999998876321111 123334332211 112221122221 11122 35667788888887
Q ss_pred HHhCCcc
Q 048507 289 KKLSQKK 295 (1448)
Q Consensus 289 ~~l~~~~ 295 (1448)
+..+++.
T Consensus 79 ~L~~g~~ 85 (277)
T cd02029 79 TYGETGR 85 (277)
T ss_pred HHHcCCC
Confidence 7766543
No 477
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=91.22 E-value=0.6 Score=55.17 Aligned_cols=89 Identities=17% Similarity=0.202 Sum_probs=54.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCcc-CHHHHHHHHHHhccCC-------CCCCCCHH----
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDF-DVKGLTKTILRSVTKQ-------TIDDSDLN---- 281 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 281 (1448)
+-..++|.|.+|+|||||+.++++.... .+-+.++++-+.+.. .+.++..++...-... ..+.....
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 3467899999999999999888864322 245677777776553 4556666665432111 11111111
Q ss_pred -HHHHHHHHHh---CCccEEEEEecC
Q 048507 282 -LLQEELKKKL---SQKKFLLVLDDV 303 (1448)
Q Consensus 282 -~~~~~l~~~l---~~~~~LlVlDdv 303 (1448)
...-.+.+++ +++.+|+++|++
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccc
Confidence 1122344444 378999999999
No 478
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=91.21 E-value=0.13 Score=53.65 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048507 217 VIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
+|.|+|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 479
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.18 E-value=0.55 Score=52.09 Aligned_cols=29 Identities=31% Similarity=0.371 Sum_probs=24.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHF 245 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f 245 (1448)
.+-|.++|++|.|||.+|++++. +....|
T Consensus 127 ~kGiLL~GPpG~GKTmlAKA~Ak--eaga~f 155 (386)
T KOG0737|consen 127 PKGILLYGPPGTGKTMLAKAIAK--EAGANF 155 (386)
T ss_pred CccceecCCCCchHHHHHHHHHH--HcCCCc
Confidence 46788999999999999999998 445555
No 480
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.17 E-value=0.16 Score=52.74 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
.+++|+|+.|+||||+|+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998764
No 481
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=91.15 E-value=0.65 Score=59.19 Aligned_cols=130 Identities=17% Similarity=0.152 Sum_probs=69.6
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCc-ccccccceEEEEEeCCccCHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDK-RVQDHFDLKAWTCVSDDFDVKGLTKTI 266 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-~~~~~f~~~~wv~~~~~~~~~~~~~~i 266 (1448)
+.++|....+.++.+....... .. .-|.|+|..|+||+++|+.+++.. +..+. .+.|++..-.. ..+..++
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~---~~-~pvli~Ge~GtGK~~~A~~ih~~s~r~~~p---fv~vnc~~~~~-~~~~~el 396 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK---SS-FPVLLCGEEGVGKALLAQAIHNESERAAGP---YIAVNCQLYPD-EALAEEF 396 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC---cC-CCEEEECCCCcCHHHHHHHHHHhCCccCCC---eEEEECCCCCh-HHHHHHh
Confidence 3578998888888777754321 12 346799999999999999998732 12223 34456655432 2222333
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccCCC-----------CCcEEEEEcCc
Q 048507 267 LRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEAGA-----------PGSKIIVTTRN 333 (1448)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~ 333 (1448)
+........ ..... .+. ....=-|+||++..........+...+.... ...|||.||..
T Consensus 397 fg~~~~~~~-~~~~g----~~~---~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 397 LGSDRTDSE-NGRLS----KFE---LAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred cCCCCcCcc-CCCCC----cee---ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 322210000 00000 000 1123358999997765555555555443211 13567777653
No 482
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=91.10 E-value=1.4 Score=49.45 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=35.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCcc-CHHHHHHHH
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDF-DVKGLTKTI 266 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i 266 (1448)
-..++|.|..|+|||+|++++++.. .-+.++++-+.+.. .+.+++.++
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 3578999999999999999999742 23567888887653 445555554
No 483
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=91.08 E-value=0.82 Score=53.56 Aligned_cols=86 Identities=19% Similarity=0.224 Sum_probs=49.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCcc-CHHHHHHHHHHhccCC-------CCCCCCHHH---
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDF-DVKGLTKTILRSVTKQ-------TIDDSDLNL--- 282 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 282 (1448)
....++|+|..|+|||||++.++.... .+.++++-+.+.. .+.++..+.+..-+.. ..+......
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 346789999999999999999986322 2344555555543 3445554444332111 011111111
Q ss_pred --HHHHHHHHh--CCccEEEEEecC
Q 048507 283 --LQEELKKKL--SQKKFLLVLDDV 303 (1448)
Q Consensus 283 --~~~~l~~~l--~~~~~LlVlDdv 303 (1448)
..-.+.+++ +++.+|+++||+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 112233444 588999999999
No 484
>PRK12678 transcription termination factor Rho; Provisional
Probab=91.06 E-value=0.65 Score=55.17 Aligned_cols=89 Identities=21% Similarity=0.197 Sum_probs=46.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEE-EEEeCCcc-CHHHHHHHHHHhccCCCCCCCCH-----HHHHHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKA-WTCVSDDF-DVKGLTKTILRSVTKQTIDDSDL-----NLLQEE 286 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~-----~~~~~~ 286 (1448)
.-...+|+|++|+|||||++.+++.... .+-++.+ .+-+.+.. .+.++.+.+-..+-....+.... ..+.-.
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999974211 1223333 34444433 23333222211111111121111 112222
Q ss_pred HHHHh--CCccEEEEEecC
Q 048507 287 LKKKL--SQKKFLLVLDDV 303 (1448)
Q Consensus 287 l~~~l--~~~~~LlVlDdv 303 (1448)
+.+++ .++.+||++|++
T Consensus 494 ~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHcCCCEEEEEeCc
Confidence 33444 578999999999
No 485
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=91.05 E-value=0.41 Score=59.56 Aligned_cols=76 Identities=14% Similarity=0.072 Sum_probs=49.8
Q ss_pred cCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHH
Q 048507 187 EAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTI 266 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 266 (1448)
-++++|.++.++.+..++... +-+.++|++|+||||+|+.+++... ...|...+++.- ...+...+++.+
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~l~-~~~~~~~~~~~n-~~~~~~~~~~~v 86 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAELLP-DEELEDILVYPN-PEDPNMPRIVEV 86 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHHcC-chhheeEEEEeC-CCCCchHHHHHH
Confidence 356889998888888777542 2455999999999999999997321 223333343332 223455567777
Q ss_pred HHhccC
Q 048507 267 LRSVTK 272 (1448)
Q Consensus 267 ~~~l~~ 272 (1448)
+..++.
T Consensus 87 ~~~~g~ 92 (608)
T TIGR00764 87 PAGEGR 92 (608)
T ss_pred HHhhch
Confidence 766553
No 486
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=91.01 E-value=0.17 Score=52.20 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
++|.+.|++|+||||+|+++...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999863
No 487
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=90.93 E-value=2.2 Score=44.46 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=37.6
Q ss_pred CeEeccchhHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 188 AQVYGRETEKKDVVELLLRDDLS-------NDGGFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.++-|-+++++++++++.-.... +-..++-|..+|++|.|||-+|++.+.
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa 227 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA 227 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH
Confidence 35668999999999987533211 112456788999999999999999876
No 488
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=90.92 E-value=0.88 Score=49.53 Aligned_cols=85 Identities=20% Similarity=0.201 Sum_probs=47.3
Q ss_pred cEEEEEEcCCCCcHHHHH-HHHHcCcccccccceE-EEEEeCCcc-CHHHHHHHHHHhccCC-------CCCCCCHHH--
Q 048507 215 FSVIPIIGMGGLGKTTLA-QLVYNDKRVQDHFDLK-AWTCVSDDF-DVKGLTKTILRSVTKQ-------TIDDSDLNL-- 282 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~-- 282 (1448)
-..++|.|..|+|||+|| ..+.+. ..-+.+ +++-+.+.. ...++..++.+.-... ..+......
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~----~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ----KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh----cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 357899999999999996 556542 122334 556665553 4556666655432111 011111111
Q ss_pred ---HHHHHHHHh--CCccEEEEEecC
Q 048507 283 ---LQEELKKKL--SQKKFLLVLDDV 303 (1448)
Q Consensus 283 ---~~~~l~~~l--~~~~~LlVlDdv 303 (1448)
..-.+.+++ +++.+|+|+||+
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcCh
Confidence 112222333 478999999999
No 489
>PRK15115 response regulator GlrR; Provisional
Probab=90.90 E-value=2 Score=52.35 Aligned_cols=46 Identities=24% Similarity=0.190 Sum_probs=32.7
Q ss_pred eEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 189 QVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
.++|+...+.++.+....-. . ....|.|.|.+|+|||++|+.+.+.
T Consensus 135 ~lig~s~~~~~~~~~~~~~a---~-~~~~vli~Ge~GtGk~~lA~~ih~~ 180 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA---Q-SDVSVLINGQSGTGKEILAQAIHNA 180 (444)
T ss_pred cccccCHHHHHHHHHHHhhc---c-CCCeEEEEcCCcchHHHHHHHHHHh
Confidence 46787777777666553321 1 2235679999999999999999874
No 490
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.87 E-value=1.2 Score=54.19 Aligned_cols=98 Identities=20% Similarity=0.197 Sum_probs=59.9
Q ss_pred CeEeccchhHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDL------SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKG 261 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1448)
+++-|-++-+..|.+-+.-.-. .+-.+..-|.++|++|.|||-+|++|+... . ..|++|..+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc--s-----L~FlSVKGP----- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC--S-----LNFLSVKGP----- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc--e-----eeEEeecCH-----
Confidence 3556777777777776532100 011235678899999999999999999732 2 345666554
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCC
Q 048507 262 LTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWN 305 (1448)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 305 (1448)
+++..-- ....+.+.+.+.+.-..+++.|.+|.++.
T Consensus 740 ---ELLNMYV-----GqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ---ELLNMYV-----GQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred ---HHHHHHh-----cchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 1222111 11223344455555567899999999954
No 491
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=90.87 E-value=0.28 Score=50.62 Aligned_cols=42 Identities=26% Similarity=0.308 Sum_probs=30.3
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+++|.+..+..+.-+... .+-+.++|.+|+|||++|+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHH
Confidence 3567888777777666543 25788999999999999999864
No 492
>PRK08149 ATP synthase SpaL; Validated
Probab=90.82 E-value=0.84 Score=53.40 Aligned_cols=85 Identities=18% Similarity=0.300 Sum_probs=49.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCC-ccCHHHHHHHHHHhccCCC-------CCCCCHH-----
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSD-DFDVKGLTKTILRSVTKQT-------IDDSDLN----- 281 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~~~~----- 281 (1448)
...++|+|..|+|||||+..++.... -+.++...+.. ..++.++..+......... .+.....
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 46889999999999999999986322 12333333333 3355566666665432111 1111111
Q ss_pred HHHHHHHHHh--CCccEEEEEecC
Q 048507 282 LLQEELKKKL--SQKKFLLVLDDV 303 (1448)
Q Consensus 282 ~~~~~l~~~l--~~~~~LlVlDdv 303 (1448)
.....+.+++ +++.+|+++||+
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccch
Confidence 1122233333 588999999999
No 493
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=90.74 E-value=0.21 Score=48.45 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..++.|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 57999999999999999988765
No 494
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=90.72 E-value=0.58 Score=49.48 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 048507 216 SVIPIIGMGGLGKTTLAQLVY 236 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~ 236 (1448)
++++|.|+.|.||||+.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 789999999999999999977
No 495
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=90.71 E-value=0.31 Score=56.31 Aligned_cols=107 Identities=12% Similarity=0.150 Sum_probs=56.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCcc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKK 295 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 295 (1448)
..+.|.|+.|+||||+.+.+... +.......++.- .+.. +.........+..... ..+.....+.++..++..+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~ti-Edp~--E~~~~~~~~~i~q~ev-g~~~~~~~~~l~~~lr~~p 196 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDY--INKNAAGHIITI-EDPI--EYVHRNKRSLINQREV-GLDTLSFANALRAALREDP 196 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEEE-cCCh--hhhccCccceEEcccc-CCCCcCHHHHHHHhhccCC
Confidence 68999999999999999988762 333334444432 2221 1110000000100001 1112234566777788889
Q ss_pred EEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCc
Q 048507 296 FLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRN 333 (1448)
Q Consensus 296 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 333 (1448)
=.|++|.+.+. +.+...... ...|..++.|.-.
T Consensus 197 d~i~vgEird~--~~~~~~l~a---a~tGh~v~~T~Ha 229 (343)
T TIGR01420 197 DVILIGEMRDL--ETVELALTA---AETGHLVFGTLHT 229 (343)
T ss_pred CEEEEeCCCCH--HHHHHHHHH---HHcCCcEEEEEcC
Confidence 99999999654 333332222 2235555555443
No 496
>PRK13947 shikimate kinase; Provisional
Probab=90.69 E-value=0.17 Score=52.04 Aligned_cols=21 Identities=43% Similarity=0.555 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048507 217 VIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
-|.|+|++|+||||+|+.+++
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 497
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=90.65 E-value=0.19 Score=47.71 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+-|.|.|.+|+||||+|.+++.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHH
Confidence 34578999999999999999985
No 498
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=90.63 E-value=0.27 Score=51.16 Aligned_cols=38 Identities=26% Similarity=0.334 Sum_probs=29.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeC
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVS 254 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 254 (1448)
.+++.|+|+.|+|||||++.+.. .....|..+++.+-.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeeccc
Confidence 36889999999999999999987 445667555555433
No 499
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=90.60 E-value=1.3 Score=48.78 Aligned_cols=53 Identities=17% Similarity=0.110 Sum_probs=36.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHh
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRS 269 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 269 (1448)
...++.|.|.+|+|||++|.+++.+..... =..++|++... +..++...++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~-g~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQ-GKPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCceEEEeCCC--CHHHHHHHHHHH
Confidence 447899999999999999998876432221 23567777655 456666666543
No 500
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=90.56 E-value=0.93 Score=47.18 Aligned_cols=20 Identities=35% Similarity=0.267 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 048507 217 VIPIIGMGGLGKTTLAQLVY 236 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~ 236 (1448)
++.|+|+.|.||||+.+.+.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred CEEEECCCCCcHHHHHHHHH
Confidence 46799999999999999987
Done!