Query 048507
Match_columns 1448
No_of_seqs 862 out of 6405
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 17:37:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048507.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048507hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.5E-48 5.1E-53 506.3 30.7 628 587-1418 69-766 (768)
2 3rgz_A Protein brassinosteroid 100.0 8.3E-44 2.9E-48 461.8 30.0 604 595-1395 50-716 (768)
3 2a5y_B CED-4; apoptosis; HET: 100.0 2.3E-43 7.9E-48 435.6 25.3 314 191-524 131-473 (549)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.2E-37 4E-42 401.9 39.6 228 1160-1397 382-623 (680)
5 1ziw_A TOLL-like receptor 3; i 100.0 2.2E-35 7.7E-40 380.6 32.5 100 595-696 25-128 (680)
6 3t6q_A CD180 antigen; protein- 100.0 9.7E-35 3.3E-39 369.4 34.1 296 994-1395 255-559 (606)
7 1vt4_I APAF-1 related killer D 100.0 6.4E-36 2.2E-40 365.9 19.8 284 190-515 130-436 (1221)
8 3vq2_A TLR4, TOLL-like recepto 100.0 2.4E-33 8.1E-38 356.6 38.3 200 1160-1394 351-556 (606)
9 3sfz_A APAF-1, apoptotic pepti 100.0 2.5E-34 8.4E-39 399.7 28.0 312 184-522 120-452 (1249)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-33 5E-38 358.5 31.6 275 1013-1374 281-559 (606)
11 3t6q_A CD180 antigen; protein- 100.0 2E-33 6.7E-38 357.4 29.6 486 596-1269 34-538 (606)
12 3j0a_A TOLL-like receptor 5; m 100.0 4.8E-31 1.6E-35 345.9 38.5 517 594-1314 23-557 (844)
13 1z6t_A APAF-1, apoptotic prote 100.0 5.9E-32 2E-36 340.9 26.3 305 187-520 123-450 (591)
14 3j0a_A TOLL-like receptor 5; m 100.0 2.5E-30 8.6E-35 339.0 38.1 508 564-1262 23-554 (844)
15 2z63_A TOLL-like receptor 4, v 100.0 4.3E-30 1.5E-34 324.5 27.8 99 595-694 28-129 (570)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1E-29 3.5E-34 319.1 29.8 191 1159-1371 310-508 (549)
17 2z81_A CD282 antigen, TOLL-lik 100.0 8.1E-30 2.8E-34 320.0 25.2 472 586-1248 19-514 (549)
18 2z63_A TOLL-like receptor 4, v 100.0 8.7E-30 3E-34 321.8 22.8 103 590-694 47-154 (570)
19 2z7x_B TOLL-like receptor 1, v 100.0 9.5E-29 3.3E-33 307.6 29.0 441 598-1271 3-461 (520)
20 4eco_A Uncharacterized protein 100.0 4.3E-29 1.5E-33 315.7 24.1 27 653-680 194-220 (636)
21 4ecn_A Leucine-rich repeat pro 100.0 7.5E-29 2.6E-33 316.4 22.7 229 993-1287 595-838 (876)
22 4g8a_A TOLL-like receptor 4; l 100.0 1.4E-27 4.9E-32 306.5 30.0 100 595-696 52-155 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.4E-27 4.7E-32 299.3 24.5 98 593-695 29-127 (562)
24 4g8a_A TOLL-like receptor 4; l 99.9 9.1E-27 3.1E-31 299.0 27.9 111 585-697 65-181 (635)
25 1jl5_A Outer protein YOPM; leu 99.9 4.1E-27 1.4E-31 283.4 21.9 75 994-1077 132-206 (454)
26 4eco_A Uncharacterized protein 99.9 9.7E-27 3.3E-31 294.1 25.2 351 1003-1396 192-600 (636)
27 4ecn_A Leucine-rich repeat pro 99.9 3.6E-26 1.2E-30 291.8 27.2 348 1004-1395 435-839 (876)
28 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 7.3E-26 2.5E-30 283.6 25.3 104 586-695 45-152 (562)
29 2z7x_B TOLL-like receptor 1, v 99.9 2E-25 6.9E-30 277.6 28.1 396 960-1395 21-480 (520)
30 3bz5_A Internalin-J, INLJ; leu 99.9 2.5E-25 8.6E-30 268.1 19.8 98 588-694 35-132 (457)
31 1jl5_A Outer protein YOPM; leu 99.9 2.4E-24 8.3E-29 259.2 22.2 60 592-651 8-68 (454)
32 3v47_A TOLL-like receptor 5B a 99.9 9.2E-24 3.2E-28 258.0 25.8 88 1160-1248 324-412 (455)
33 1o6v_A Internalin A; bacterial 99.9 3.8E-23 1.3E-27 252.2 30.7 96 593-694 44-139 (466)
34 3bz5_A Internalin-J, INLJ; leu 99.9 1.3E-23 4.3E-28 253.2 20.8 117 561-695 38-154 (457)
35 3v47_A TOLL-like receptor 5B a 99.9 5E-23 1.7E-27 251.5 25.5 130 1159-1314 275-405 (455)
36 1o6v_A Internalin A; bacterial 99.9 6.9E-22 2.4E-26 241.0 29.1 348 958-1378 44-392 (466)
37 4fmz_A Internalin; leucine ric 99.9 1.4E-21 4.9E-26 228.9 23.1 302 992-1394 43-344 (347)
38 4fmz_A Internalin; leucine ric 99.9 4.9E-21 1.7E-25 224.3 24.7 304 956-1371 40-344 (347)
39 2id5_A Lingo-1, leucine rich r 99.9 8.6E-21 2.9E-25 232.8 27.4 295 992-1348 31-332 (477)
40 2id5_A Lingo-1, leucine rich r 99.9 1.1E-20 3.9E-25 231.7 24.4 310 996-1371 14-331 (477)
41 3o6n_A APL1; leucine-rich repe 99.8 2.4E-20 8.3E-25 222.0 22.7 211 1160-1397 142-353 (390)
42 3o6n_A APL1; leucine-rich repe 99.8 6.9E-20 2.4E-24 218.0 23.1 305 931-1287 43-350 (390)
43 3oja_B Anopheles plasmodium-re 99.8 4.5E-20 1.5E-24 232.0 22.4 211 1160-1397 148-359 (597)
44 3oja_B Anopheles plasmodium-re 99.8 6.7E-20 2.3E-24 230.5 23.0 305 931-1287 49-356 (597)
45 1ogq_A PGIP-2, polygalacturona 99.8 1E-20 3.5E-25 216.5 12.8 225 1160-1397 77-305 (313)
46 1xku_A Decorin; proteoglycan, 99.8 1.8E-18 6.3E-23 200.4 26.2 201 1160-1370 122-329 (330)
47 4fcg_A Uncharacterized protein 99.8 1.3E-19 4.6E-24 208.4 16.3 218 1159-1392 81-310 (328)
48 2ft3_A Biglycan; proteoglycan, 99.8 1E-18 3.6E-23 202.6 22.9 201 1160-1371 124-331 (332)
49 4fcg_A Uncharacterized protein 99.8 7.8E-19 2.7E-23 202.0 21.5 229 992-1263 80-309 (328)
50 1ogq_A PGIP-2, polygalacturona 99.8 2.9E-19 9.8E-24 204.6 13.3 247 994-1289 51-304 (313)
51 2ft3_A Biglycan; proteoglycan, 99.8 4.8E-18 1.7E-22 196.9 22.3 216 1160-1395 79-306 (332)
52 1xku_A Decorin; proteoglycan, 99.8 4.6E-18 1.6E-22 197.1 21.5 239 961-1242 32-274 (330)
53 3ogk_B Coronatine-insensitive 99.8 1.3E-19 4.6E-24 229.4 5.0 102 995-1098 140-252 (592)
54 3g06_A SSPH2 (leucine-rich rep 99.7 5.2E-17 1.8E-21 200.9 22.9 81 593-683 38-118 (622)
55 1z7x_W Ribonuclease inhibitor; 99.7 1.6E-19 5.6E-24 220.8 0.3 82 595-676 3-96 (461)
56 3zyj_A Leucine-rich repeat-con 99.7 7.1E-17 2.4E-21 195.0 22.6 198 1160-1371 89-290 (440)
57 1z7x_W Ribonuclease inhibitor; 99.7 1.3E-19 4.5E-24 221.6 -1.6 375 960-1394 3-438 (461)
58 3zyi_A Leucine-rich repeat-con 99.7 4.9E-17 1.7E-21 197.2 20.5 222 1157-1394 73-301 (452)
59 3zyi_A Leucine-rich repeat-con 99.7 7.9E-17 2.7E-21 195.4 21.9 198 1160-1371 100-301 (452)
60 3g06_A SSPH2 (leucine-rich rep 99.7 1.6E-16 5.6E-21 196.4 24.7 257 994-1373 41-297 (622)
61 3ogk_B Coronatine-insensitive 99.7 8.1E-19 2.8E-23 222.2 3.2 38 1334-1371 486-524 (592)
62 2z80_A TOLL-like receptor 2, v 99.7 3.9E-17 1.3E-21 191.2 16.2 108 1160-1267 101-211 (353)
63 3zyj_A Leucine-rich repeat-con 99.7 1.1E-16 3.6E-21 193.5 20.3 223 1157-1395 62-291 (440)
64 1ozn_A Reticulon 4 receptor; N 99.7 1.5E-16 5.1E-21 179.9 18.1 202 1157-1371 30-236 (285)
65 2p1m_B Transport inhibitor res 99.7 3.5E-19 1.2E-23 225.8 -4.6 146 957-1102 63-224 (594)
66 2z80_A TOLL-like receptor 2, v 99.7 8.1E-17 2.8E-21 188.4 14.2 83 1160-1243 150-234 (353)
67 2z66_A Variable lymphocyte rec 99.7 1.4E-16 4.8E-21 182.4 15.6 226 1157-1395 26-260 (306)
68 2z66_A Variable lymphocyte rec 99.7 3.5E-16 1.2E-20 179.1 18.4 103 1160-1262 127-230 (306)
69 2p1m_B Transport inhibitor res 99.7 1.3E-18 4.5E-23 220.5 -2.7 108 958-1076 128-245 (594)
70 3o53_A Protein LRIM1, AGAP0063 99.7 4.3E-17 1.5E-21 187.1 7.7 100 1160-1262 121-221 (317)
71 3oja_A Leucine-rich immune mol 99.7 3.2E-16 1.1E-20 190.5 15.1 213 1158-1396 33-250 (487)
72 1wwl_A Monocyte differentiatio 99.7 2E-17 6.9E-22 189.4 4.2 222 1160-1394 64-307 (312)
73 1ozn_A Reticulon 4 receptor; N 99.7 1.5E-15 5.2E-20 171.6 18.5 218 1162-1395 14-237 (285)
74 3o53_A Protein LRIM1, AGAP0063 99.6 5.3E-16 1.8E-20 178.0 13.8 209 1160-1394 35-248 (317)
75 2xwt_C Thyrotropin receptor; s 99.6 1E-15 3.4E-20 167.9 15.0 205 1157-1395 29-238 (239)
76 1wwl_A Monocyte differentiatio 99.6 1.2E-16 4E-21 183.0 7.6 82 957-1051 40-132 (312)
77 3oja_A Leucine-rich immune mol 99.6 1.9E-15 6.5E-20 183.7 16.4 215 990-1287 31-248 (487)
78 2qen_A Walker-type ATPase; unk 99.6 7.6E-15 2.6E-19 172.0 20.1 291 186-516 10-349 (350)
79 2xwt_C Thyrotropin receptor; s 99.6 3E-15 1E-19 164.1 14.7 201 1121-1372 29-238 (239)
80 2z62_A TOLL-like receptor 4, v 99.6 5.1E-15 1.7E-19 166.4 15.5 201 1157-1371 26-235 (276)
81 4ay9_X Follicle-stimulating ho 99.6 8.3E-15 2.8E-19 170.5 17.5 221 1157-1392 28-255 (350)
82 1p9a_G Platelet glycoprotein I 99.6 2.1E-14 7.1E-19 161.7 19.4 111 1158-1271 30-141 (290)
83 2o6q_A Variable lymphocyte rec 99.6 5.7E-14 1.9E-18 157.0 20.0 178 1158-1371 36-216 (270)
84 2z62_A TOLL-like receptor 4, v 99.6 1.6E-14 5.5E-19 162.3 15.5 207 1173-1394 20-235 (276)
85 1w5s_A Origin recognition comp 99.6 1.9E-14 6.5E-19 172.6 17.1 311 187-510 21-386 (412)
86 2o6q_A Variable lymphocyte rec 99.6 5.3E-14 1.8E-18 157.2 19.5 197 1160-1395 17-217 (270)
87 4glp_A Monocyte differentiatio 99.6 1.1E-14 3.9E-19 166.4 13.9 202 1160-1394 92-305 (310)
88 3qfl_A MLA10; coiled-coil, (CC 99.5 5E-15 1.7E-19 136.9 6.7 79 12-90 2-82 (115)
89 2fna_A Conserved hypothetical 99.5 8.8E-14 3E-18 163.5 18.8 290 186-515 11-356 (357)
90 3rfs_A Internalin B, repeat mo 99.5 3.7E-14 1.3E-18 158.5 14.0 177 1160-1378 64-240 (272)
91 1p9a_G Platelet glycoprotein I 99.5 1.5E-13 5.1E-18 154.6 17.6 192 1160-1370 11-205 (290)
92 3rfs_A Internalin B, repeat mo 99.5 7.5E-14 2.6E-18 156.0 13.9 93 1160-1259 158-250 (272)
93 4ay9_X Follicle-stimulating ho 99.5 4.2E-13 1.4E-17 156.1 19.8 165 1168-1369 89-255 (350)
94 1h6u_A Internalin H; cell adhe 99.5 1.3E-13 4.4E-18 157.0 14.3 192 1160-1378 42-234 (308)
95 1h6u_A Internalin H; cell adhe 99.5 1.5E-13 5E-18 156.5 14.0 192 1179-1395 37-229 (308)
96 4glp_A Monocyte differentiatio 99.5 1.5E-13 5.1E-18 157.1 12.1 36 1017-1052 91-129 (310)
97 3m19_A Variable lymphocyte rec 99.5 7.1E-13 2.4E-17 146.2 16.5 158 1157-1348 33-191 (251)
98 2ast_B S-phase kinase-associat 99.5 1.9E-14 6.6E-19 167.3 4.1 81 993-1076 70-152 (336)
99 3m19_A Variable lymphocyte rec 99.4 1.1E-12 3.9E-17 144.5 16.7 174 1160-1371 15-190 (251)
100 2ast_B S-phase kinase-associat 99.4 2E-14 6.9E-19 167.1 2.2 199 1160-1393 94-303 (336)
101 3cvr_A Invasion plasmid antige 99.4 2E-12 6.9E-17 157.6 15.0 187 1160-1377 60-247 (571)
102 2ca6_A RAN GTPase-activating p 99.4 3.6E-14 1.2E-18 168.2 -1.9 39 1180-1218 91-133 (386)
103 2o6s_A Variable lymphocyte rec 99.3 2.3E-12 8E-17 137.5 11.7 162 1158-1361 27-190 (208)
104 2v1u_A Cell division control p 99.3 2.8E-11 9.7E-16 143.7 22.2 293 187-497 18-350 (387)
105 2qby_B CDC6 homolog 3, cell di 99.3 1.9E-11 6.6E-16 144.8 20.5 287 188-497 20-338 (384)
106 2ca6_A RAN GTPase-activating p 99.3 5.8E-14 2E-18 166.4 -2.5 248 1087-1371 30-314 (386)
107 1fnn_A CDC6P, cell division co 99.3 9.5E-11 3.2E-15 139.2 24.0 293 188-498 17-351 (389)
108 3cvr_A Invasion plasmid antige 99.3 7.4E-12 2.5E-16 152.6 14.5 175 1183-1395 59-242 (571)
109 3goz_A Leucine-rich repeat-con 99.3 9.6E-14 3.3E-18 162.5 -2.7 233 1156-1394 19-295 (362)
110 4ezg_A Putative uncharacterize 99.3 1.1E-11 3.9E-16 130.6 13.2 124 1160-1287 45-170 (197)
111 1h6t_A Internalin B; cell adhe 99.3 1E-11 3.5E-16 139.8 11.9 171 1160-1378 47-217 (291)
112 3goz_A Leucine-rich repeat-con 99.3 2.7E-13 9.4E-18 158.6 -1.9 239 1121-1371 20-295 (362)
113 1h6t_A Internalin B; cell adhe 99.3 1.5E-11 5.2E-16 138.4 12.4 167 1121-1347 44-211 (291)
114 1m9s_A Internalin B; cell inva 99.3 5.7E-12 1.9E-16 155.8 9.4 192 1160-1378 22-214 (605)
115 2qby_A CDC6 homolog 1, cell di 99.2 1E-10 3.5E-15 138.8 19.5 291 187-497 19-347 (386)
116 4ezg_A Putative uncharacterize 99.2 1.8E-11 6.2E-16 129.0 10.7 124 1160-1286 67-191 (197)
117 2o6s_A Variable lymphocyte rec 99.2 5.7E-11 2E-15 126.6 13.0 155 1182-1378 27-183 (208)
118 2v9t_B SLIT homolog 2 protein 99.2 6.2E-11 2.1E-15 127.1 12.4 129 1157-1286 30-162 (220)
119 1m9s_A Internalin B; cell inva 99.2 4.3E-11 1.5E-15 148.0 12.2 80 1160-1245 132-211 (605)
120 2xot_A Amphoterin-induced prot 99.2 2.6E-11 8.8E-16 141.6 9.5 153 1157-1314 37-199 (361)
121 1xeu_A Internalin C; cellular 99.2 3.1E-11 1.1E-15 133.5 8.8 145 1204-1371 38-183 (263)
122 3e6j_A Variable lymphocyte rec 99.2 9.6E-11 3.3E-15 126.6 12.4 129 1157-1287 38-170 (229)
123 3e6j_A Variable lymphocyte rec 99.1 2.6E-10 9E-15 123.1 13.8 99 1160-1262 20-119 (229)
124 2v9t_B SLIT homolog 2 protein 99.1 2.8E-10 9.5E-15 122.0 13.1 148 1163-1347 15-163 (220)
125 2xot_A Amphoterin-induced prot 99.1 2E-10 6.8E-15 134.0 12.7 105 1162-1269 21-127 (361)
126 2v70_A SLIT-2, SLIT homolog 2 99.1 4.5E-10 1.5E-14 120.4 14.4 87 1160-1246 82-168 (220)
127 2v70_A SLIT-2, SLIT homolog 2 99.1 1.7E-10 5.8E-15 123.7 11.0 131 1158-1314 31-163 (220)
128 1dce_A Protein (RAB geranylger 99.1 4.6E-12 1.6E-16 155.8 -2.2 184 1160-1389 350-566 (567)
129 1njg_A DNA polymerase III subu 99.1 6.5E-10 2.2E-14 122.6 15.0 197 188-396 23-231 (250)
130 2ell_A Acidic leucine-rich nuc 99.1 1.5E-10 5.3E-15 118.4 9.1 111 586-699 40-157 (168)
131 2ell_A Acidic leucine-rich nuc 99.1 9E-11 3.1E-15 120.2 6.7 102 593-696 22-127 (168)
132 2wfh_A SLIT homolog 2 protein 99.1 1.3E-10 4.4E-15 121.5 7.8 102 595-697 31-134 (193)
133 2je0_A Acidic leucine-rich nuc 99.1 1.1E-10 3.8E-15 116.7 7.0 108 586-696 33-147 (149)
134 1xeu_A Internalin C; cellular 99.0 7.5E-10 2.6E-14 122.3 12.8 118 1160-1286 42-160 (263)
135 2je0_A Acidic leucine-rich nuc 99.0 1.4E-10 4.9E-15 115.9 6.1 102 593-696 15-120 (149)
136 3sb4_A Hypothetical leucine ri 99.0 1.3E-09 4.5E-14 125.3 14.7 88 1276-1379 226-315 (329)
137 1a9n_A U2A', U2A'; complex (nu 99.0 2.7E-10 9.3E-15 117.4 7.6 105 590-697 36-148 (176)
138 1w8a_A SLIT protein; signaling 99.0 2.8E-10 9.6E-15 119.0 7.5 101 596-696 30-133 (192)
139 2chg_A Replication factor C sm 99.0 2.7E-09 9.1E-14 115.6 14.5 185 188-393 17-204 (226)
140 4b8c_D Glucose-repressible alc 99.0 1.1E-10 3.9E-15 148.3 4.0 101 593-695 222-322 (727)
141 4b8c_D Glucose-repressible alc 99.0 4.4E-10 1.5E-14 142.9 8.0 121 560-688 219-339 (727)
142 1w8a_A SLIT protein; signaling 98.9 3.2E-09 1.1E-13 110.9 11.6 106 1157-1262 27-133 (192)
143 1dce_A Protein (RAB geranylger 98.9 1.2E-09 4.1E-14 134.3 8.8 92 591-684 459-551 (567)
144 1ds9_A Outer arm dynein; leuci 98.9 4.4E-11 1.5E-15 126.2 -4.8 106 586-695 39-146 (198)
145 1a9n_A U2A', U2A'; complex (nu 98.9 1.2E-09 4.2E-14 112.5 6.1 102 591-696 15-120 (176)
146 3g39_A Variable lymphocyte rec 98.8 3.6E-09 1.2E-13 107.9 8.0 96 597-696 11-109 (170)
147 2r9u_A Variable lymphocyte rec 98.8 3.8E-09 1.3E-13 108.1 8.1 93 598-694 15-110 (174)
148 3sb4_A Hypothetical leucine ri 98.8 1.5E-08 5.2E-13 116.4 13.9 106 1159-1268 202-311 (329)
149 1hqc_A RUVB; extended AAA-ATPa 98.8 6.2E-09 2.1E-13 119.7 10.4 181 188-396 12-214 (324)
150 2r9u_A Variable lymphocyte rec 98.8 2.6E-09 8.8E-14 109.3 6.3 100 586-689 26-128 (174)
151 2wfh_A SLIT homolog 2 protein 98.8 1E-08 3.5E-13 107.0 10.9 105 1157-1262 29-133 (193)
152 1sxj_B Activator 1 37 kDa subu 98.8 1.1E-08 3.6E-13 117.8 12.1 186 188-394 21-211 (323)
153 2o6r_A Variable lymphocyte rec 98.8 2.2E-08 7.5E-13 103.2 10.8 104 1158-1262 27-131 (177)
154 3g39_A Variable lymphocyte rec 98.8 7.9E-09 2.7E-13 105.4 7.0 91 587-681 24-117 (170)
155 4fdw_A Leucine rich hypothetic 98.7 1.8E-07 6.3E-12 109.4 19.4 175 1177-1369 174-354 (401)
156 1ds9_A Outer arm dynein; leuci 98.7 4.2E-10 1.4E-14 118.6 -3.6 127 560-696 43-181 (198)
157 2o6r_A Variable lymphocyte rec 98.7 5.8E-08 2E-12 100.0 11.9 107 1160-1270 8-116 (177)
158 4fdw_A Leucine rich hypothetic 98.7 8.6E-07 2.9E-11 103.8 21.1 122 1160-1287 249-381 (401)
159 1iqp_A RFCS; clamp loader, ext 98.6 1.5E-07 5.3E-12 108.2 12.7 183 188-394 25-213 (327)
160 2ifg_A High affinity nerve gro 98.6 4.2E-08 1.4E-12 113.9 7.1 94 600-695 13-109 (347)
161 3te6_A Regulatory protein SIR3 98.5 4.1E-07 1.4E-11 100.7 13.4 171 189-364 21-211 (318)
162 4fs7_A Uncharacterized protein 98.5 4.1E-06 1.4E-10 98.7 21.7 67 948-1026 59-126 (394)
163 2chq_A Replication factor C sm 98.5 5.8E-07 2E-11 102.9 12.1 180 188-392 17-203 (319)
164 1jr3_A DNA polymerase III subu 98.4 7.7E-07 2.6E-11 104.5 13.1 194 188-393 16-221 (373)
165 4fs7_A Uncharacterized protein 98.4 8.5E-06 2.9E-10 96.0 20.9 190 1177-1391 179-374 (394)
166 3pfi_A Holliday junction ATP-d 98.3 9.1E-06 3.1E-10 93.5 16.6 176 188-392 29-226 (338)
167 1jbk_A CLPB protein; beta barr 98.2 1.5E-06 5E-11 91.2 7.6 45 188-238 22-66 (195)
168 2ifg_A High affinity nerve gro 98.2 1.7E-06 5.9E-11 100.2 8.7 84 1160-1244 32-116 (347)
169 3bos_A Putative DNA replicatio 98.2 6.6E-07 2.3E-11 97.7 3.6 172 189-393 29-217 (242)
170 1sxj_D Activator 1 41 kDa subu 98.1 4.4E-06 1.5E-10 97.0 10.1 194 188-392 37-234 (353)
171 3un9_A NLR family member X1; l 98.1 1.2E-07 4E-12 110.0 -3.6 104 1159-1262 72-190 (372)
172 3un9_A NLR family member X1; l 98.1 3E-07 1E-11 106.5 -1.8 100 594-694 71-188 (372)
173 3h4m_A Proteasome-activating n 98.1 7.4E-06 2.5E-10 91.7 9.6 186 187-392 16-230 (285)
174 1sxj_A Activator 1 95 kDa subu 98.0 8.7E-06 3E-10 98.8 10.4 196 188-393 39-253 (516)
175 1sxj_E Activator 1 40 kDa subu 98.0 9.2E-06 3.2E-10 94.3 9.1 194 188-393 14-237 (354)
176 1a5t_A Delta prime, HOLB; zinc 98.0 6.7E-05 2.3E-09 85.5 15.7 171 194-392 8-204 (334)
177 3uk6_A RUVB-like 2; hexameric 98.0 5.1E-05 1.8E-09 88.5 15.0 197 188-392 44-302 (368)
178 4gt6_A Cell surface protein; l 98.0 0.00035 1.2E-08 82.0 22.2 85 952-1048 55-145 (394)
179 3pvs_A Replication-associated 98.0 5.6E-05 1.9E-09 89.0 14.9 174 188-392 26-214 (447)
180 2z4s_A Chromosomal replication 98.0 1.4E-05 4.6E-10 94.6 9.4 159 215-390 130-303 (440)
181 2ra8_A Uncharacterized protein 97.9 1.5E-05 5.1E-10 91.3 9.2 59 1159-1217 252-317 (362)
182 2qz4_A Paraplegin; AAA+, SPG7, 97.9 0.00011 3.6E-09 81.0 15.3 185 188-392 6-221 (262)
183 2ra8_A Uncharacterized protein 97.9 5.5E-06 1.9E-10 94.9 4.8 166 1179-1371 135-318 (362)
184 4gt6_A Cell surface protein; l 97.9 0.00038 1.3E-08 81.8 20.1 110 950-1075 77-191 (394)
185 1d2n_A N-ethylmaleimide-sensit 97.9 0.00011 3.8E-09 81.2 14.0 170 189-384 34-228 (272)
186 3eie_A Vacuolar protein sortin 97.8 0.00017 5.9E-09 81.7 15.4 185 188-393 18-228 (322)
187 3u61_B DNA polymerase accessor 97.8 4.2E-05 1.4E-09 87.3 10.0 174 188-388 26-211 (324)
188 1xwi_A SKD1 protein; VPS4B, AA 97.8 0.00054 1.9E-08 77.3 19.0 187 188-393 12-223 (322)
189 3syl_A Protein CBBX; photosynt 97.8 7.3E-05 2.5E-09 84.7 11.2 158 189-364 32-217 (309)
190 1sxj_C Activator 1 40 kDa subu 97.8 8.3E-05 2.8E-09 85.3 11.6 173 189-389 26-208 (340)
191 2qp9_X Vacuolar protein sortin 97.8 0.00029 9.9E-09 80.8 16.0 186 188-393 51-261 (355)
192 3n70_A Transport activator; si 97.7 3.3E-05 1.1E-09 75.8 6.6 113 189-333 2-115 (145)
193 2p65_A Hypothetical protein PF 97.7 2.1E-05 7E-10 81.6 4.9 45 188-238 22-66 (187)
194 1l8q_A Chromosomal replication 97.7 0.00012 4.1E-09 83.4 11.6 154 215-388 37-203 (324)
195 3d8b_A Fidgetin-like protein 1 97.6 0.00033 1.1E-08 80.6 13.9 186 188-394 84-296 (357)
196 3rw6_A Nuclear RNA export fact 97.6 3.2E-05 1.1E-09 83.5 4.9 59 593-652 168-231 (267)
197 3b9p_A CG5977-PA, isoform A; A 97.6 0.00066 2.3E-08 76.1 15.1 184 188-392 21-232 (297)
198 2zan_A Vacuolar protein sortin 97.6 0.00075 2.6E-08 79.9 16.1 187 188-393 134-345 (444)
199 3ec2_A DNA replication protein 97.5 7.6E-05 2.6E-09 76.6 6.1 121 193-333 19-142 (180)
200 3cf0_A Transitional endoplasmi 97.5 0.00049 1.7E-08 77.0 13.1 180 188-387 15-222 (301)
201 3e4g_A ATP synthase subunit S, 97.5 7.2E-05 2.5E-09 74.3 5.2 14 1067-1080 115-128 (176)
202 3e4g_A ATP synthase subunit S, 97.5 6.4E-05 2.2E-09 74.7 4.7 88 994-1082 62-155 (176)
203 3rw6_A Nuclear RNA export fact 97.5 2.1E-05 7E-10 84.9 1.1 103 593-697 139-259 (267)
204 1in4_A RUVB, holliday junction 97.5 0.0019 6.6E-08 73.3 17.5 175 189-392 26-222 (334)
205 3pxg_A Negative regulator of g 97.5 0.0003 1E-08 83.9 11.3 147 188-364 180-338 (468)
206 4h09_A Hypothetical leucine ri 97.5 0.0077 2.6E-07 70.1 23.2 89 1177-1269 234-324 (379)
207 4h09_A Hypothetical leucine ri 97.5 0.0084 2.9E-07 69.8 23.5 61 1298-1368 280-341 (379)
208 3vfd_A Spastin; ATPase, microt 97.5 0.001 3.5E-08 77.7 15.4 186 188-393 115-326 (389)
209 2gno_A DNA polymerase III, gam 97.4 0.00031 1E-08 78.1 9.7 149 192-364 1-152 (305)
210 2w58_A DNAI, primosome compone 97.4 0.00017 5.7E-09 75.7 6.9 119 195-333 36-158 (202)
211 3hu3_A Transitional endoplasmi 97.4 0.00052 1.8E-08 81.6 11.5 185 188-392 204-414 (489)
212 3co5_A Putative two-component 97.4 8.8E-05 3E-09 72.5 4.0 110 189-333 5-115 (143)
213 1io0_A Tropomodulin; LRR prote 97.4 8E-05 2.7E-09 76.6 3.6 84 593-676 34-134 (185)
214 4b4t_J 26S protease regulatory 97.3 0.00095 3.2E-08 75.6 11.0 179 188-386 148-354 (405)
215 1qvr_A CLPB protein; coiled co 97.2 0.00049 1.7E-08 89.1 9.7 153 188-362 170-343 (854)
216 1ofh_A ATP-dependent HSL prote 97.2 0.0015 5.3E-08 73.7 12.4 51 188-238 15-73 (310)
217 1r6b_X CLPA protein; AAA+, N-t 97.2 0.002 7E-08 82.6 14.8 155 188-363 186-361 (758)
218 4fcw_A Chaperone protein CLPB; 97.2 0.00089 3E-08 75.7 10.2 123 189-318 18-143 (311)
219 1lv7_A FTSH; alpha/beta domain 97.1 0.0031 1E-07 68.8 13.5 184 188-391 12-223 (257)
220 2c9o_A RUVB-like 1; hexameric 97.1 0.0012 4.1E-08 78.7 10.8 97 296-392 297-409 (456)
221 1io0_A Tropomodulin; LRR prote 97.1 0.00021 7.3E-09 73.3 3.6 115 561-676 32-162 (185)
222 2kjq_A DNAA-related protein; s 97.1 0.00024 8.3E-09 69.6 3.8 39 215-255 36-74 (149)
223 4b4t_L 26S protease subunit RP 97.1 0.0019 6.6E-08 74.6 11.3 180 187-386 180-387 (437)
224 3pxi_A Negative regulator of g 97.1 0.0014 4.9E-08 83.8 11.2 147 188-364 180-338 (758)
225 2bjv_A PSP operon transcriptio 97.0 0.00071 2.4E-08 74.4 7.1 62 188-255 6-67 (265)
226 2r62_A Cell division protease 97.0 0.00017 5.8E-09 79.6 1.8 179 188-386 11-218 (268)
227 4b4t_H 26S protease regulatory 97.0 0.0011 3.6E-08 76.3 8.0 178 188-385 209-414 (467)
228 1ojl_A Transcriptional regulat 97.0 0.00079 2.7E-08 75.2 6.6 46 188-237 2-47 (304)
229 2ce7_A Cell division protein F 96.9 0.0021 7E-08 75.7 9.8 179 188-386 16-221 (476)
230 4b4t_K 26S protease regulatory 96.9 0.0039 1.3E-07 71.9 11.4 52 187-238 171-229 (428)
231 4b4t_M 26S protease regulatory 96.8 0.0011 3.7E-08 76.5 6.5 179 187-385 180-386 (434)
232 3cf2_A TER ATPase, transitiona 96.8 0.0036 1.2E-07 78.0 11.5 179 188-386 204-407 (806)
233 3pxi_A Negative regulator of g 96.7 0.001 3.5E-08 85.1 5.2 155 188-363 491-674 (758)
234 4b4t_I 26S protease regulatory 96.6 0.0013 4.6E-08 74.6 5.3 178 188-385 182-387 (437)
235 3t15_A Ribulose bisphosphate c 96.3 0.019 6.5E-07 63.6 11.9 25 214-238 35-59 (293)
236 2r44_A Uncharacterized protein 96.3 0.0046 1.6E-07 70.4 7.0 150 189-365 28-199 (331)
237 3m6a_A ATP-dependent protease 96.3 0.005 1.7E-07 74.7 7.6 164 188-363 81-265 (543)
238 2qgz_A Helicase loader, putati 96.3 0.0032 1.1E-07 70.3 5.4 57 193-253 133-189 (308)
239 2vhj_A Ntpase P4, P4; non- hyd 96.2 0.0025 8.6E-08 69.4 3.8 69 215-305 123-193 (331)
240 1ypw_A Transitional endoplasmi 96.1 0.01 3.5E-07 75.5 9.4 158 187-364 203-385 (806)
241 2cvh_A DNA repair and recombin 96.0 0.022 7.6E-07 60.2 10.3 86 214-305 19-116 (220)
242 2dhr_A FTSH; AAA+ protein, hex 96.0 0.041 1.4E-06 65.1 13.3 176 187-386 30-236 (499)
243 3rfe_A Platelet glycoprotein I 96.0 0.007 2.4E-07 57.3 5.3 53 598-652 11-66 (130)
244 1qvr_A CLPB protein; coiled co 95.9 0.01 3.5E-07 76.7 8.4 136 188-333 558-710 (854)
245 1r6b_X CLPA protein; AAA+, N-t 95.8 0.0084 2.9E-07 76.8 7.1 50 188-237 458-510 (758)
246 1ixz_A ATP-dependent metallopr 95.7 0.032 1.1E-06 60.5 10.1 149 218-386 52-221 (254)
247 3hr8_A Protein RECA; alpha and 95.5 0.027 9.1E-07 63.4 8.8 85 214-305 60-150 (356)
248 1um8_A ATP-dependent CLP prote 95.5 0.034 1.2E-06 64.4 9.9 22 216-237 73-94 (376)
249 1iy2_A ATP-dependent metallopr 95.5 0.038 1.3E-06 60.8 9.8 179 188-386 40-245 (278)
250 2x8a_A Nuclear valosin-contain 95.4 0.065 2.2E-06 58.5 11.4 126 218-364 47-191 (274)
251 3io5_A Recombination and repai 95.4 0.035 1.2E-06 60.2 8.8 84 217-305 30-122 (333)
252 2b8t_A Thymidine kinase; deoxy 95.4 0.0095 3.3E-07 62.1 4.1 114 214-335 11-127 (223)
253 1jr3_D DNA polymerase III, del 95.3 0.073 2.5E-06 60.6 11.8 155 215-391 18-183 (343)
254 1xp8_A RECA protein, recombina 95.2 0.042 1.4E-06 62.3 9.0 84 214-304 73-162 (366)
255 2px0_A Flagellar biosynthesis 95.2 0.044 1.5E-06 60.3 8.9 87 214-303 104-191 (296)
256 1g5t_A COB(I)alamin adenosyltr 95.1 0.0077 2.6E-07 60.6 2.1 113 216-334 29-163 (196)
257 2zr9_A Protein RECA, recombina 95.0 0.045 1.5E-06 61.9 8.6 84 214-304 60-149 (349)
258 1v5w_A DMC1, meiotic recombina 94.9 0.08 2.7E-06 59.9 10.5 58 213-271 120-181 (343)
259 1n0w_A DNA repair protein RAD5 94.8 0.049 1.7E-06 58.6 8.0 90 214-304 23-129 (243)
260 2z43_A DNA repair and recombin 94.7 0.06 2E-06 60.5 8.7 57 214-271 106-166 (324)
261 1rz3_A Hypothetical protein rb 94.7 0.03 1E-06 58.1 5.5 43 192-237 2-44 (201)
262 2w0m_A SSO2452; RECA, SSPF, un 94.6 0.05 1.7E-06 58.0 7.5 115 215-334 23-168 (235)
263 1u94_A RECA protein, recombina 94.5 0.066 2.2E-06 60.5 8.2 84 214-304 62-151 (356)
264 3cf2_A TER ATPase, transitiona 94.5 0.05 1.7E-06 67.9 7.8 98 187-304 476-580 (806)
265 2i1q_A DNA repair and recombin 94.5 0.053 1.8E-06 61.1 7.5 89 214-303 97-213 (322)
266 1cr0_A DNA primase/helicase; R 93.7 0.12 4E-06 57.4 8.3 38 215-254 35-73 (296)
267 3tqc_A Pantothenate kinase; bi 93.7 0.15 5.1E-06 56.4 8.7 45 191-237 70-114 (321)
268 3bh0_A DNAB-like replicative h 93.4 0.28 9.5E-06 54.7 10.6 52 214-269 67-118 (315)
269 1vma_A Cell division protein F 93.2 0.23 7.9E-06 54.7 9.3 89 214-305 103-197 (306)
270 3nbx_X ATPase RAVA; AAA+ ATPas 93.1 0.053 1.8E-06 64.2 4.4 41 190-238 24-64 (500)
271 1gvn_B Zeta; postsegregational 92.9 0.09 3.1E-06 57.7 5.6 41 196-237 15-55 (287)
272 3c8u_A Fructokinase; YP_612366 92.9 0.078 2.7E-06 55.2 4.9 38 196-237 7-44 (208)
273 3dm5_A SRP54, signal recogniti 92.7 0.76 2.6E-05 53.0 12.9 24 214-237 99-122 (443)
274 3lda_A DNA repair protein RAD5 92.6 0.26 9E-06 56.5 9.0 57 214-271 177-237 (400)
275 1pzn_A RAD51, DNA repair and r 92.5 0.3 1E-05 55.2 9.3 47 214-260 130-180 (349)
276 1zp6_A Hypothetical protein AT 92.5 0.071 2.4E-06 54.7 3.8 25 214-238 8-32 (191)
277 1qhx_A CPT, protein (chloramph 92.5 0.057 1.9E-06 54.7 3.0 22 216-237 4-25 (178)
278 1odf_A YGR205W, hypothetical 3 92.4 0.085 2.9E-06 57.8 4.5 25 213-237 29-53 (290)
279 4a1f_A DNAB helicase, replicat 92.4 0.27 9.4E-06 54.7 8.6 52 215-270 46-97 (338)
280 3ice_A Transcription terminati 92.4 0.11 3.6E-06 58.0 5.1 86 214-303 173-270 (422)
281 3kb2_A SPBC2 prophage-derived 92.2 0.062 2.1E-06 54.0 2.9 22 216-237 2-23 (173)
282 2ga8_A Hypothetical 39.9 kDa p 92.2 0.13 4.4E-06 57.2 5.4 45 191-237 2-46 (359)
283 3vaa_A Shikimate kinase, SK; s 92.2 0.069 2.4E-06 55.2 3.2 23 215-237 25-47 (199)
284 3lw7_A Adenylate kinase relate 92.1 0.07 2.4E-06 53.9 3.2 20 216-235 2-21 (179)
285 2p5t_B PEZT; postsegregational 92.0 0.11 3.9E-06 55.9 4.8 42 195-237 13-54 (253)
286 1ly1_A Polynucleotide kinase; 91.9 0.081 2.8E-06 53.6 3.4 22 216-237 3-24 (181)
287 2xxa_A Signal recognition part 91.9 0.36 1.2E-05 56.1 9.1 40 214-254 99-138 (433)
288 3uie_A Adenylyl-sulfate kinase 91.8 0.1 3.4E-06 54.0 3.9 25 214-238 24-48 (200)
289 2dr3_A UPF0273 protein PH0284; 91.7 0.41 1.4E-05 51.2 9.0 40 214-255 22-61 (247)
290 1sky_E F1-ATPase, F1-ATP synth 91.7 0.27 9.2E-06 56.8 7.6 51 216-267 152-203 (473)
291 1j8m_F SRP54, signal recogniti 91.6 0.35 1.2E-05 53.1 8.2 90 215-306 98-192 (297)
292 1ls1_A Signal recognition part 91.5 0.37 1.2E-05 53.0 8.3 86 215-303 98-189 (295)
293 3trf_A Shikimate kinase, SK; a 91.5 0.085 2.9E-06 53.7 3.0 22 216-237 6-27 (185)
294 1kgd_A CASK, peripheral plasma 91.5 0.09 3.1E-06 53.2 3.1 23 215-237 5-27 (180)
295 1knq_A Gluconate kinase; ALFA/ 91.4 0.13 4.5E-06 51.8 4.2 24 214-237 7-30 (175)
296 2ffh_A Protein (FFH); SRP54, s 91.4 0.58 2E-05 53.9 10.0 87 215-304 98-190 (425)
297 1kag_A SKI, shikimate kinase I 91.4 0.084 2.9E-06 53.1 2.8 22 216-237 5-26 (173)
298 3hws_A ATP-dependent CLP prote 91.3 0.12 4.2E-06 59.3 4.4 49 189-237 16-73 (363)
299 2rhm_A Putative kinase; P-loop 91.3 0.11 3.8E-06 53.3 3.6 24 214-237 4-27 (193)
300 4eun_A Thermoresistant glucoki 91.2 0.11 3.6E-06 53.8 3.3 23 215-237 29-51 (200)
301 3kl4_A SRP54, signal recogniti 91.2 0.33 1.1E-05 56.0 7.7 90 214-305 96-190 (433)
302 1zu4_A FTSY; GTPase, signal re 91.1 0.52 1.8E-05 52.3 9.0 39 214-254 104-142 (320)
303 4gp7_A Metallophosphoesterase; 91.0 0.11 3.6E-06 52.2 3.0 22 215-236 9-30 (171)
304 1y63_A LMAJ004144AAA protein; 91.0 0.11 3.9E-06 52.7 3.3 24 214-237 9-32 (184)
305 3e70_C DPA, signal recognition 90.9 0.6 2E-05 52.0 9.3 24 214-237 128-151 (328)
306 1pgv_A TMD-1, tropomodulin TMD 90.9 0.17 5.7E-06 51.2 4.3 83 593-675 39-136 (197)
307 3tau_A Guanylate kinase, GMP k 90.9 0.12 4.2E-06 53.7 3.5 25 214-238 7-31 (208)
308 2bdt_A BH3686; alpha-beta prot 90.8 0.13 4.5E-06 52.6 3.6 22 216-237 3-24 (189)
309 1nks_A Adenylate kinase; therm 90.8 0.12 4.1E-06 53.1 3.3 22 216-237 2-23 (194)
310 3iij_A Coilin-interacting nucl 90.8 0.11 3.6E-06 52.8 2.8 23 215-237 11-33 (180)
311 2qt1_A Nicotinamide riboside k 90.8 0.14 4.9E-06 53.2 3.9 24 214-237 20-43 (207)
312 3tr0_A Guanylate kinase, GMP k 90.7 0.13 4.4E-06 53.4 3.5 23 215-237 7-29 (205)
313 2j37_W Signal recognition part 90.7 1 3.6E-05 53.1 11.5 25 213-237 99-123 (504)
314 1uj2_A Uridine-cytidine kinase 90.7 0.13 4.5E-06 55.4 3.6 24 214-237 21-44 (252)
315 1uf9_A TT1252 protein; P-loop, 90.7 0.14 4.7E-06 53.1 3.6 25 213-237 6-30 (203)
316 3t61_A Gluconokinase; PSI-biol 90.7 0.1 3.5E-06 54.1 2.6 23 215-237 18-40 (202)
317 1zuh_A Shikimate kinase; alpha 90.7 0.12 4E-06 51.7 3.0 23 215-237 7-29 (168)
318 2orw_A Thymidine kinase; TMTK, 90.6 0.029 1E-06 56.9 -1.6 22 216-237 4-25 (184)
319 1ukz_A Uridylate kinase; trans 90.6 0.16 5.3E-06 52.7 4.0 24 214-237 14-37 (203)
320 2ze6_A Isopentenyl transferase 90.5 0.13 4.5E-06 55.3 3.4 22 216-237 2-23 (253)
321 3asz_A Uridine kinase; cytidin 90.5 0.15 5E-06 53.3 3.7 24 214-237 5-28 (211)
322 1ye8_A Protein THEP1, hypothet 90.4 0.14 4.9E-06 51.4 3.3 22 217-238 2-23 (178)
323 1kht_A Adenylate kinase; phosp 90.4 0.13 4.5E-06 52.7 3.2 22 216-237 4-25 (192)
324 1q57_A DNA primase/helicase; d 90.3 0.66 2.2E-05 55.7 9.7 54 214-270 241-294 (503)
325 2j41_A Guanylate kinase; GMP, 90.3 0.15 5.1E-06 53.0 3.5 24 215-238 6-29 (207)
326 1tev_A UMP-CMP kinase; ploop, 90.3 0.15 5E-06 52.5 3.5 23 215-237 3-25 (196)
327 2qor_A Guanylate kinase; phosp 90.3 0.12 4.1E-06 53.6 2.8 24 214-237 11-34 (204)
328 3a00_A Guanylate kinase, GMP k 90.3 0.11 3.9E-06 52.8 2.5 22 216-237 2-23 (186)
329 3umf_A Adenylate kinase; rossm 90.2 0.17 5.7E-06 52.5 3.7 25 213-237 27-51 (217)
330 1ypw_A Transitional endoplasmi 90.2 0.019 6.6E-07 73.1 -4.1 52 187-238 476-534 (806)
331 2yvu_A Probable adenylyl-sulfa 90.2 0.18 6.2E-06 51.3 4.0 25 214-238 12-36 (186)
332 1jjv_A Dephospho-COA kinase; P 90.2 0.16 5.5E-06 52.7 3.6 22 216-237 3-24 (206)
333 2c95_A Adenylate kinase 1; tra 90.1 0.14 4.8E-06 52.6 3.2 23 215-237 9-31 (196)
334 1ex7_A Guanylate kinase; subst 90.1 0.1 3.4E-06 52.7 1.9 22 216-237 2-23 (186)
335 3a4m_A L-seryl-tRNA(SEC) kinas 90.0 0.16 5.5E-06 54.9 3.6 23 215-237 4-26 (260)
336 2jaq_A Deoxyguanosine kinase; 90.0 0.15 5E-06 52.9 3.2 21 217-237 2-22 (205)
337 1tue_A Replication protein E1; 90.0 0.21 7.2E-06 50.4 4.0 37 197-238 45-81 (212)
338 2iyv_A Shikimate kinase, SK; t 89.9 0.11 3.9E-06 52.7 2.2 22 216-237 3-24 (184)
339 3cm0_A Adenylate kinase; ATP-b 89.9 0.17 5.8E-06 51.5 3.5 23 215-237 4-26 (186)
340 2if2_A Dephospho-COA kinase; a 89.9 0.15 5E-06 53.0 3.0 21 217-237 3-23 (204)
341 1xjc_A MOBB protein homolog; s 89.9 0.16 5.4E-06 50.1 3.0 24 214-237 3-26 (169)
342 2cdn_A Adenylate kinase; phosp 89.8 0.17 6E-06 52.2 3.6 24 214-237 19-42 (201)
343 1via_A Shikimate kinase; struc 89.8 0.15 5.1E-06 51.3 2.9 21 217-237 6-26 (175)
344 2grj_A Dephospho-COA kinase; T 89.8 0.17 5.9E-06 51.4 3.4 24 214-237 11-34 (192)
345 1htw_A HI0065; nucleotide-bind 89.8 0.21 7.1E-06 48.9 3.8 24 214-237 32-55 (158)
346 3fwy_A Light-independent proto 89.8 0.18 6.1E-06 55.9 3.8 40 214-255 47-86 (314)
347 1g8p_A Magnesium-chelatase 38 89.8 0.12 4E-06 59.2 2.4 45 188-238 24-68 (350)
348 3ney_A 55 kDa erythrocyte memb 89.7 0.19 6.6E-06 51.0 3.6 24 214-237 18-41 (197)
349 2yhs_A FTSY, cell division pro 89.7 0.61 2.1E-05 54.3 8.2 25 213-237 291-315 (503)
350 2r6a_A DNAB helicase, replicat 89.7 0.62 2.1E-05 55.0 8.6 51 214-267 202-252 (454)
351 3rfe_A Platelet glycoprotein I 89.7 0.25 8.6E-06 46.5 4.2 53 621-676 11-66 (130)
352 1qf9_A UMP/CMP kinase, protein 89.6 0.21 7.1E-06 51.2 4.0 23 215-237 6-28 (194)
353 3aez_A Pantothenate kinase; tr 89.6 0.2 6.7E-06 55.6 3.9 24 214-237 89-112 (312)
354 3tlx_A Adenylate kinase 2; str 89.6 0.24 8.2E-06 52.9 4.5 24 214-237 28-51 (243)
355 1lvg_A Guanylate kinase, GMP k 89.6 0.14 4.8E-06 52.7 2.6 22 216-237 5-26 (198)
356 1cke_A CK, MSSA, protein (cyti 89.6 0.16 5.6E-06 53.6 3.2 22 216-237 6-27 (227)
357 2plr_A DTMP kinase, probable t 89.5 0.19 6.6E-06 52.4 3.6 23 216-238 5-27 (213)
358 3cmu_A Protein RECA, recombina 89.5 0.48 1.6E-05 64.8 8.1 84 214-304 1426-1515(2050)
359 3e1s_A Exodeoxyribonuclease V, 89.4 0.35 1.2E-05 58.7 6.2 104 216-332 205-314 (574)
360 1e6c_A Shikimate kinase; phosp 89.4 0.14 4.8E-06 51.4 2.4 22 216-237 3-24 (173)
361 2jeo_A Uridine-cytidine kinase 89.4 0.22 7.4E-06 53.4 4.0 24 214-237 24-47 (245)
362 2bbw_A Adenylate kinase 4, AK4 89.4 0.18 6.2E-06 54.1 3.3 23 215-237 27-49 (246)
363 2bwj_A Adenylate kinase 5; pho 89.4 0.16 5.6E-06 52.3 2.9 22 216-237 13-34 (199)
364 2pt5_A Shikimate kinase, SK; a 89.3 0.18 6.3E-06 50.2 3.2 21 217-237 2-22 (168)
365 2pez_A Bifunctional 3'-phospho 89.3 0.21 7.3E-06 50.4 3.6 24 214-237 4-27 (179)
366 3llm_A ATP-dependent RNA helic 89.3 0.53 1.8E-05 49.9 6.9 100 197-305 66-187 (235)
367 2vli_A Antibiotic resistance p 89.2 0.13 4.5E-06 52.2 2.1 23 215-237 5-27 (183)
368 2z0h_A DTMP kinase, thymidylat 89.2 0.38 1.3E-05 49.4 5.6 21 217-237 2-22 (197)
369 1znw_A Guanylate kinase, GMP k 89.2 0.2 6.8E-06 52.0 3.4 23 215-237 20-42 (207)
370 2ck3_D ATP synthase subunit be 89.0 1.3 4.5E-05 51.0 10.1 55 214-269 152-207 (482)
371 3jvv_A Twitching mobility prot 89.0 0.18 6.2E-06 56.9 3.0 110 216-337 124-234 (356)
372 1rj9_A FTSY, signal recognitio 88.9 0.22 7.5E-06 54.9 3.6 24 214-237 101-124 (304)
373 2pbr_A DTMP kinase, thymidylat 88.8 0.21 7E-06 51.3 3.2 21 217-237 2-22 (195)
374 2f6r_A COA synthase, bifunctio 88.8 0.24 8.3E-06 54.1 3.9 23 214-236 74-96 (281)
375 1z6g_A Guanylate kinase; struc 88.8 0.18 6.3E-06 52.7 2.8 23 215-237 23-45 (218)
376 1fx0_B ATP synthase beta chain 88.8 0.81 2.8E-05 53.0 8.2 55 214-269 164-219 (498)
377 1aky_A Adenylate kinase; ATP:A 88.8 0.21 7E-06 52.5 3.2 22 216-237 5-26 (220)
378 3l0o_A Transcription terminati 88.7 0.12 4E-06 57.5 1.2 53 198-256 163-216 (427)
379 2hf9_A Probable hydrogenase ni 88.7 0.33 1.1E-05 51.1 4.8 25 214-238 37-61 (226)
380 1s96_A Guanylate kinase, GMP k 88.7 0.23 7.8E-06 51.8 3.3 24 214-237 15-38 (219)
381 3upu_A ATP-dependent DNA helic 88.6 0.5 1.7E-05 56.0 6.7 22 217-238 47-68 (459)
382 4e22_A Cytidylate kinase; P-lo 88.5 0.23 7.9E-06 53.3 3.4 23 215-237 27-49 (252)
383 1sq5_A Pantothenate kinase; P- 88.5 0.44 1.5E-05 52.9 5.8 24 214-237 79-102 (308)
384 2wwf_A Thymidilate kinase, put 88.5 0.21 7.3E-06 52.0 3.1 23 215-237 10-32 (212)
385 1nn5_A Similar to deoxythymidy 88.4 0.23 7.7E-06 52.0 3.2 23 215-237 9-31 (215)
386 2q6t_A DNAB replication FORK h 88.3 1.2 4.2E-05 52.2 9.8 53 214-269 199-251 (444)
387 4a74_A DNA repair and recombin 88.3 0.58 2E-05 49.4 6.4 43 214-256 24-70 (231)
388 1zd8_A GTP:AMP phosphotransfer 88.2 0.22 7.4E-06 52.7 2.9 23 215-237 7-29 (227)
389 4edh_A DTMP kinase, thymidylat 88.1 0.97 3.3E-05 46.7 7.7 24 215-238 6-29 (213)
390 1g41_A Heat shock protein HSLU 88.0 0.34 1.2E-05 55.9 4.6 51 187-237 14-72 (444)
391 1m7g_A Adenylylsulfate kinase; 88.0 0.29 9.8E-06 51.0 3.7 23 215-237 25-47 (211)
392 2v54_A DTMP kinase, thymidylat 87.9 0.26 9E-06 51.0 3.3 23 216-238 5-27 (204)
393 3fb4_A Adenylate kinase; psych 87.9 0.25 8.7E-06 51.7 3.2 21 217-237 2-22 (216)
394 1vht_A Dephospho-COA kinase; s 87.7 0.31 1.1E-05 51.1 3.8 23 215-237 4-26 (218)
395 1zak_A Adenylate kinase; ATP:A 87.7 0.23 7.8E-06 52.3 2.6 23 215-237 5-27 (222)
396 3dl0_A Adenylate kinase; phosp 87.6 0.27 9.2E-06 51.5 3.2 21 217-237 2-22 (216)
397 3hjn_A DTMP kinase, thymidylat 87.5 0.69 2.3E-05 47.3 6.1 50 217-268 2-51 (197)
398 2wsm_A Hydrogenase expression/ 87.4 0.38 1.3E-05 50.5 4.3 40 193-238 14-53 (221)
399 3nwj_A ATSK2; P loop, shikimat 87.4 0.23 7.7E-06 52.9 2.4 22 216-237 49-70 (250)
400 3b9q_A Chloroplast SRP recepto 87.3 0.34 1.2E-05 53.4 3.8 24 214-237 99-122 (302)
401 2i3b_A HCR-ntpase, human cance 87.3 0.26 9E-06 49.9 2.7 21 217-237 3-23 (189)
402 3d3q_A TRNA delta(2)-isopenten 87.1 0.31 1.1E-05 53.9 3.4 22 216-237 8-29 (340)
403 3k1j_A LON protease, ATP-depen 87.1 0.31 1.1E-05 60.0 3.8 43 188-238 41-83 (604)
404 4eaq_A DTMP kinase, thymidylat 86.9 0.51 1.7E-05 49.6 4.9 25 214-238 25-49 (229)
405 2onk_A Molybdate/tungstate ABC 86.9 0.32 1.1E-05 51.5 3.2 22 216-237 25-46 (240)
406 3cmu_A Protein RECA, recombina 86.9 0.87 3E-05 62.3 8.1 84 214-304 382-471 (2050)
407 3vkw_A Replicase large subunit 86.9 1.6 5.4E-05 50.1 9.1 27 211-237 157-183 (446)
408 1pgv_A TMD-1, tropomodulin TMD 86.9 0.35 1.2E-05 48.9 3.3 89 588-676 63-168 (197)
409 3a8t_A Adenylate isopentenyltr 86.8 0.42 1.4E-05 52.7 4.1 23 215-237 40-62 (339)
410 2ged_A SR-beta, signal recogni 86.8 0.47 1.6E-05 48.4 4.4 25 214-238 47-71 (193)
411 3bgw_A DNAB-like replicative h 86.8 1.4 4.7E-05 51.6 8.8 52 214-269 196-247 (444)
412 2ehv_A Hypothetical protein PH 86.7 0.33 1.1E-05 52.2 3.3 23 215-237 30-52 (251)
413 1gtv_A TMK, thymidylate kinase 86.7 0.17 6E-06 52.8 1.0 21 217-237 2-22 (214)
414 3cmw_A Protein RECA, recombina 86.6 0.81 2.8E-05 61.8 7.5 85 214-305 382-472 (1706)
415 3r20_A Cytidylate kinase; stru 86.6 0.36 1.2E-05 50.5 3.3 23 215-237 9-31 (233)
416 3tif_A Uncharacterized ABC tra 86.6 0.35 1.2E-05 51.2 3.3 23 215-237 31-53 (235)
417 2f1r_A Molybdopterin-guanine d 86.5 0.21 7.3E-06 49.6 1.5 22 216-237 3-24 (171)
418 3ake_A Cytidylate kinase; CMP 86.5 0.34 1.2E-05 50.3 3.2 21 217-237 4-24 (208)
419 2r9v_A ATP synthase subunit al 86.5 1 3.5E-05 52.2 7.3 85 215-303 175-276 (515)
420 3lnc_A Guanylate kinase, GMP k 86.4 0.25 8.6E-06 52.3 2.1 23 215-237 27-50 (231)
421 3p32_A Probable GTPase RV1496/ 86.3 0.64 2.2E-05 52.8 5.6 37 197-237 65-101 (355)
422 3b85_A Phosphate starvation-in 86.2 0.32 1.1E-05 50.2 2.7 22 216-237 23-44 (208)
423 2pcj_A ABC transporter, lipopr 86.2 0.34 1.2E-05 50.8 3.0 22 216-237 31-52 (224)
424 3sr0_A Adenylate kinase; phosp 86.2 0.37 1.3E-05 49.6 3.2 21 217-237 2-22 (206)
425 2qe7_A ATP synthase subunit al 86.2 0.86 2.9E-05 52.8 6.4 85 215-303 162-263 (502)
426 1np6_A Molybdopterin-guanine d 86.1 0.41 1.4E-05 47.6 3.3 25 214-238 5-29 (174)
427 3be4_A Adenylate kinase; malar 86.1 0.3 1E-05 51.1 2.5 22 216-237 6-27 (217)
428 2qmh_A HPR kinase/phosphorylas 86.1 0.43 1.5E-05 47.9 3.4 23 216-238 35-57 (205)
429 3crm_A TRNA delta(2)-isopenten 86.1 0.39 1.3E-05 52.9 3.4 22 216-237 6-27 (323)
430 1a7j_A Phosphoribulokinase; tr 86.0 0.23 7.8E-06 54.5 1.6 24 214-237 4-27 (290)
431 2xb4_A Adenylate kinase; ATP-b 86.0 0.37 1.3E-05 50.6 3.2 21 217-237 2-22 (223)
432 3exa_A TRNA delta(2)-isopenten 86.0 0.43 1.5E-05 51.9 3.6 23 215-237 3-25 (322)
433 2vp4_A Deoxynucleoside kinase; 85.9 0.41 1.4E-05 50.6 3.5 25 213-237 18-42 (230)
434 3vr4_D V-type sodium ATPase su 85.9 0.61 2.1E-05 53.4 5.0 88 216-303 152-257 (465)
435 2cbz_A Multidrug resistance-as 85.9 0.39 1.3E-05 50.8 3.3 23 215-237 31-53 (237)
436 1e4v_A Adenylate kinase; trans 85.9 0.37 1.3E-05 50.3 3.1 21 217-237 2-22 (214)
437 2og2_A Putative signal recogni 85.7 0.46 1.6E-05 53.5 3.8 24 214-237 156-179 (359)
438 1ak2_A Adenylate kinase isoenz 85.6 0.41 1.4E-05 50.7 3.3 22 216-237 17-38 (233)
439 1b0u_A Histidine permease; ABC 85.6 0.4 1.4E-05 51.6 3.2 23 215-237 32-54 (262)
440 3gfo_A Cobalt import ATP-bindi 85.6 0.39 1.3E-05 52.0 3.1 22 216-237 35-56 (275)
441 3foz_A TRNA delta(2)-isopenten 85.5 0.51 1.7E-05 51.2 3.9 24 214-237 9-32 (316)
442 2fz4_A DNA repair protein RAD2 85.5 1.7 5.8E-05 45.9 8.1 103 218-331 111-226 (237)
443 3gqb_B V-type ATP synthase bet 85.3 0.66 2.3E-05 53.1 4.9 89 215-303 147-260 (464)
444 1mv5_A LMRA, multidrug resista 85.3 0.48 1.7E-05 50.4 3.7 23 215-237 28-50 (243)
445 2olj_A Amino acid ABC transpor 85.3 0.43 1.5E-05 51.3 3.2 23 215-237 50-72 (263)
446 4g1u_C Hemin import ATP-bindin 85.0 0.43 1.5E-05 51.4 3.1 23 215-237 37-59 (266)
447 1yrb_A ATP(GTP)binding protein 85.0 0.55 1.9E-05 50.8 4.1 25 213-237 12-36 (262)
448 1sgw_A Putative ABC transporte 85.0 0.38 1.3E-05 49.9 2.5 22 216-237 36-57 (214)
449 1ji0_A ABC transporter; ATP bi 85.0 0.44 1.5E-05 50.6 3.1 22 216-237 33-54 (240)
450 2c61_A A-type ATP synthase non 84.9 0.66 2.3E-05 53.5 4.7 89 215-303 152-258 (469)
451 3cmw_A Protein RECA, recombina 84.9 1.1 3.8E-05 60.5 7.5 84 213-303 1429-1518(1706)
452 2v9p_A Replication protein E1; 84.9 0.46 1.6E-05 52.0 3.3 24 214-237 125-148 (305)
453 2xau_A PRE-mRNA-splicing facto 84.9 2.2 7.5E-05 53.9 9.9 34 195-236 97-130 (773)
454 2d2e_A SUFC protein; ABC-ATPas 84.7 0.48 1.7E-05 50.6 3.4 22 216-237 30-51 (250)
455 1g6h_A High-affinity branched- 84.7 0.45 1.5E-05 51.1 3.1 23 215-237 33-55 (257)
456 1vpl_A ABC transporter, ATP-bi 84.7 0.47 1.6E-05 50.7 3.2 23 215-237 41-63 (256)
457 2pze_A Cystic fibrosis transme 84.7 0.46 1.6E-05 50.0 3.1 22 216-237 35-56 (229)
458 3zvl_A Bifunctional polynucleo 84.7 0.48 1.6E-05 55.1 3.6 26 213-238 256-281 (416)
459 2zu0_C Probable ATP-dependent 84.6 0.51 1.7E-05 51.0 3.5 23 215-237 46-68 (267)
460 2ff7_A Alpha-hemolysin translo 84.6 0.47 1.6E-05 50.5 3.1 22 216-237 36-57 (247)
461 1q3t_A Cytidylate kinase; nucl 84.5 0.52 1.8E-05 50.0 3.5 25 213-237 14-38 (236)
462 2ghi_A Transport protein; mult 84.5 0.49 1.7E-05 50.8 3.3 23 215-237 46-68 (260)
463 1ltq_A Polynucleotide kinase; 84.4 0.49 1.7E-05 52.5 3.4 22 216-237 3-24 (301)
464 4tmk_A Protein (thymidylate ki 84.4 2.7 9.4E-05 43.3 8.7 52 216-268 4-55 (213)
465 1fx0_A ATP synthase alpha chai 84.4 0.93 3.2E-05 52.6 5.6 83 215-303 163-264 (507)
466 2wji_A Ferrous iron transport 84.4 0.62 2.1E-05 46.1 3.8 23 216-238 4-26 (165)
467 3mfy_A V-type ATP synthase alp 84.3 1.5 5.3E-05 51.1 7.3 49 214-266 226-275 (588)
468 2r8r_A Sensor protein; KDPD, P 84.3 1.3 4.5E-05 45.6 6.1 39 216-256 7-45 (228)
469 2ixe_A Antigen peptide transpo 84.3 0.51 1.7E-05 51.1 3.3 23 215-237 45-67 (271)
470 1svm_A Large T antigen; AAA+ f 84.2 0.53 1.8E-05 53.4 3.5 24 214-237 168-191 (377)
471 2qi9_C Vitamin B12 import ATP- 84.1 0.51 1.7E-05 50.3 3.1 22 216-237 27-48 (249)
472 1oix_A RAS-related protein RAB 84.1 0.53 1.8E-05 48.0 3.2 24 215-238 29-52 (191)
473 2eyu_A Twitching motility prot 84.0 0.63 2.2E-05 50.0 3.9 107 215-335 25-134 (261)
474 2zej_A Dardarin, leucine-rich 83.9 0.5 1.7E-05 47.8 2.9 22 217-238 4-25 (184)
475 2yz2_A Putative ABC transporte 83.8 0.55 1.9E-05 50.7 3.3 23 215-237 33-55 (266)
476 3ld9_A DTMP kinase, thymidylat 83.7 1.1 3.9E-05 46.4 5.5 25 214-238 20-44 (223)
477 3end_A Light-independent proto 83.7 0.91 3.1E-05 50.4 5.2 42 213-256 39-80 (307)
478 3vr4_A V-type sodium ATPase ca 83.6 2.2 7.7E-05 50.0 8.4 59 199-266 221-280 (600)
479 2ihy_A ABC transporter, ATP-bi 83.6 0.54 1.8E-05 51.0 3.1 23 215-237 47-69 (279)
480 2nq2_C Hypothetical ABC transp 83.5 0.54 1.8E-05 50.3 3.1 22 216-237 32-53 (253)
481 2dyk_A GTP-binding protein; GT 83.4 0.68 2.3E-05 45.4 3.6 23 216-238 2-24 (161)
482 2ck3_A ATP synthase subunit al 83.4 1.2 4.1E-05 51.7 6.0 89 215-303 162-271 (510)
483 1u0j_A DNA replication protein 83.2 1 3.5E-05 47.8 5.0 36 198-237 91-126 (267)
484 2v3c_C SRP54, signal recogniti 83.2 0.73 2.5E-05 53.4 4.2 25 214-238 98-122 (432)
485 1nlf_A Regulatory protein REPA 83.2 0.52 1.8E-05 51.5 2.9 23 215-237 30-52 (279)
486 1w36_D RECD, exodeoxyribonucle 82.9 1.6 5.3E-05 53.6 7.2 22 216-237 165-186 (608)
487 2ocp_A DGK, deoxyguanosine kin 82.9 0.66 2.3E-05 49.4 3.5 23 215-237 2-24 (241)
488 2f9l_A RAB11B, member RAS onco 82.8 0.66 2.3E-05 47.6 3.4 24 215-238 5-28 (199)
489 2wjg_A FEOB, ferrous iron tran 82.5 0.94 3.2E-05 45.8 4.4 25 214-238 6-30 (188)
490 1cp2_A CP2, nitrogenase iron p 82.0 1.2 4E-05 48.4 5.2 39 216-256 2-40 (269)
491 3lv8_A DTMP kinase, thymidylat 82.0 1.4 4.6E-05 46.4 5.3 24 215-238 27-50 (236)
492 2j9r_A Thymidine kinase; TK1, 82.0 0.68 2.3E-05 47.3 2.9 110 215-335 28-139 (214)
493 2pjz_A Hypothetical protein ST 81.9 0.69 2.4E-05 49.6 3.1 22 216-237 31-52 (263)
494 3nh6_A ATP-binding cassette SU 81.8 0.57 1.9E-05 51.5 2.5 23 215-237 80-102 (306)
495 3sop_A Neuronal-specific septi 81.6 0.72 2.5E-05 49.8 3.2 21 217-237 4-24 (270)
496 2lkc_A Translation initiation 81.5 1.1 3.7E-05 44.8 4.4 25 214-238 7-31 (178)
497 3oaa_A ATP synthase subunit al 81.5 2.8 9.7E-05 48.4 8.0 83 215-303 162-263 (513)
498 3v9p_A DTMP kinase, thymidylat 81.4 1.1 3.9E-05 46.6 4.4 24 215-238 25-48 (227)
499 2bbs_A Cystic fibrosis transme 81.4 0.74 2.5E-05 50.2 3.1 23 215-237 64-86 (290)
500 3eph_A TRNA isopentenyltransfe 81.2 0.76 2.6E-05 52.0 3.2 22 216-237 3-24 (409)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.5e-48 Score=506.32 Aligned_cols=628 Identities=17% Similarity=0.089 Sum_probs=384.9
Q ss_pred hhhhhcccCceeEEEeCCCCccccCccccCCccceEEeccCcccc-ccCh--hhhccccccEEeccCCchhhcccccc-c
Q 048507 587 ILTELFKLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIR-TLPE--SVNKLYNLHSLLLEDCDRLKKLCADM-G 662 (1448)
Q Consensus 587 ~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~-~lp~--~i~~L~~L~~L~L~~n~~~~~lp~~i-~ 662 (1448)
+++.+.++++|+.++++.+.+..+|+.|+.+++|++|+|++|.+. .+|. .++++++|++|+|++|...+..|..+ .
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 148 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred cChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhc
Confidence 677778899999999999988888889999999999999999987 6777 89999999999999987777777765 8
Q ss_pred ccCCCCeeeecCCCCccccccc---cCcccccccccceecccCCCCCccccccccccCceeEEeecCCccchhhhHHhhc
Q 048507 663 NLAKLHHLKNSNTKSLEEMPVG---IGRLTSLQTLCNFVVGQGSGSGLRELKLLTHLHGTLKISKLENVKCVGDAMEAQM 739 (1448)
Q Consensus 663 ~L~~L~~L~l~~~~~l~~~p~~---i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l 739 (1448)
++++|++|++++|.+.+..|.. ++++++|++|+...+.. ... ..+
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l------------------------~~~--------~~~ 196 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI------------------------SGD--------VDV 196 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEE------------------------ESC--------CBC
T ss_pred cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcc------------------------ccc--------CCc
Confidence 8999999999999844444444 67777777773321110 000 002
Q ss_pred CCCCCCCeEEEEeecCCCCCCChhhhhHHhhhccCCCCCCcceeEEeceecCCCCCceEeCccccCCCCCCCCCccceee
Q 048507 740 DGKKNLKELSLNWTCSTDGSSSREVETEMGVLDMLKPHTNLEQFCIKGYGVSGMSRVKRLGSEFYGNDSPIPFPCLETLL 819 (1448)
Q Consensus 740 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~l~~l~~l~~~~~~~~~~~~~~~L~~L~ 819 (1448)
..+++|++|++++|.... .+..+..+++|++|++++|.+.+..
T Consensus 197 ~~l~~L~~L~Ls~n~l~~------------~~~~l~~l~~L~~L~Ls~n~l~~~~------------------------- 239 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFST------------GIPFLGDCSALQHLDISGNKLSGDF------------------------- 239 (768)
T ss_dssp TTCTTCCEEECCSSCCCS------------CCCBCTTCCSCCEEECCSSCCCSCH-------------------------
T ss_pred ccCCcCCEEECcCCcCCC------------CCcccccCCCCCEEECcCCcCCCcc-------------------------
Confidence 345566666666543221 1122445556666666665543210
Q ss_pred ccccccccccccCCCcccCccCcccceeecccCcccccCCCC-CCCCccEEEEccccCc---cccccc-ccccceeeccc
Q 048507 820 FENMQEWEDWIPHGFSQGVEGFPKLRELQILSCSKLQGTFPE-HLPALEKLVIKGCEEL---SVLVSS-LPALCKLQIGG 894 (1448)
Q Consensus 820 l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~-~l~~L~~L~l~~~~~l---~~~~~~-l~~L~~L~l~~ 894 (1448)
+.....+++|++|++++| .+.+.+|. .+++|++|++++|... +..+.. +++|++|++++
T Consensus 240 ---------------~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~ 303 (768)
T 3rgz_A 240 ---------------SRAISTCTELKLLNISSN-QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303 (768)
T ss_dssp ---------------HHHTTTCSSCCEEECCSS-CCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCS
T ss_pred ---------------cHHHhcCCCCCEEECCCC-cccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcC
Confidence 001234455555555555 33333331 3444555555444321 111212 25555555555
Q ss_pred ccceeeecccccCCCccccccccCCccccccCccccccchhhhhhccccccceeeccCCccccccCCcceEeecCCCCcc
Q 048507 895 CKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKLRLPKLEELILSTKEQTYIWKSHDGLLQDICSLKRLTIDSCPTLQ 974 (1448)
Q Consensus 895 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~i~~~~~~~~~~l~~L~~L~l~~~~~l~ 974 (1448)
|.... ..+..+..+++|++|++++|....
T Consensus 304 n~l~~---------------------------------------------------~~p~~~~~l~~L~~L~L~~n~l~~ 332 (768)
T 3rgz_A 304 NHFYG---------------------------------------------------AVPPFFGSCSLLESLALSSNNFSG 332 (768)
T ss_dssp SEEEE---------------------------------------------------CCCGGGGGCTTCCEEECCSSEEEE
T ss_pred CcCCC---------------------------------------------------ccchHHhcCCCccEEECCCCcccC
Confidence 43221 223334556666666666654433
Q ss_pred ccchhhhhHHHhhhhhhccccceEEecccCCccccccccCccC-CcceeeeccCCCCcccCC-CCC--ccccceeEeccc
Q 048507 975 SLVAEEEKDQQQQLCELSCRLEYLELNECKGLVKLPQSSLSLS-SLREIEICGCSSLVSFPE-VAL--PAKLRIISINSC 1050 (1448)
Q Consensus 975 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~lp~~~~~l~-~L~~L~L~~c~~l~~~~~-~~~--~~~L~~L~l~~~ 1050 (1448)
.++...+ ..+++|++|++++|...+.+|..+..++ +|++|++++|.....+|. ... +++|++|++++|
T Consensus 333 ~ip~~~l--------~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n 404 (768)
T 3rgz_A 333 ELPMDTL--------LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404 (768)
T ss_dssp ECCHHHH--------TTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS
T ss_pred cCCHHHH--------hcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCC
Confidence 4443211 1235666677766665556666666665 677777776654444433 222 456667777666
Q ss_pred CCCCccchhhccCCCCCcceEEEecCCCccccc-CCcCCcCccEEEEecCCCCcccccccccccccCCccCCCCccceee
Q 048507 1051 DALKWLPEAWMCDFNSSLEILSIECCRSLTYIA-GVQLPPSLKRLYIEFCDNIRTLTVEEGVQRSSSSRRCTSSLLEELD 1129 (1448)
Q Consensus 1051 ~~l~~lp~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~ 1129 (1448)
...+.+|..+. .+++|++|++++|.....++ .+..+++|+.|++++|.....
T Consensus 405 ~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~------------------------- 457 (768)
T 3rgz_A 405 GFTGKIPPTLS--NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE------------------------- 457 (768)
T ss_dssp EEEEECCGGGG--GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSC-------------------------
T ss_pred ccccccCHHHh--cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCc-------------------------
Confidence 66556665554 36666666666654222221 122334444444444432211
Q ss_pred ccCCCCcccccccCCCchhhhccccCCCCccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCc
Q 048507 1130 INSCPSLTCIFSKNELPATLESLEVGNLPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQL 1209 (1448)
Q Consensus 1130 l~~c~~l~~i~~~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L 1209 (1448)
+|..+..+ ++|++|++++|...+.+|..+.++++|++|++++|.+.+.+|..+..+++|
T Consensus 458 ---------------~p~~~~~l------~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 516 (768)
T 3rgz_A 458 ---------------IPQELMYV------KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516 (768)
T ss_dssp ---------------CCGGGGGC------TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred ---------------CCHHHcCC------CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC
Confidence 22222222 266666666666666666666666666666666666666666666666666
Q ss_pred cEEEcccCCCccccCCCCCCCCCccEEEecCccCccccccccCCCCcccceecc--------------------------
Q 048507 1210 QEIEIRRCGNLVSFPKGGLPGAKLTRLEISDCNRLEALPKGLHNLKSLQELRIG-------------------------- 1263 (1448)
Q Consensus 1210 ~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~-------------------------- 1263 (1448)
++|+|++|+..+.+|..+..+++|+.|++++|+..+.+|..+.....+..+.+.
T Consensus 517 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (768)
T 3rgz_A 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596 (768)
T ss_dssp CEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEEC
T ss_pred CEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccc
Confidence 666666666666666666666666666666666666666655554443332220
Q ss_pred ---------------------cCCCcc--ccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecCCCcCcc
Q 048507 1264 ---------------------VELPSL--EEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDMVS 1320 (1448)
Q Consensus 1264 ---------------------~~l~~~--~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~ 1320 (1448)
+.+... +.....++|+.|++++|. ..+..+..+.++++|+.|++++| ...+.
T Consensus 597 ~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~----l~g~ip~~l~~l~~L~~L~Ls~N-~l~g~ 671 (768)
T 3rgz_A 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM----LSGYIPKEIGSMPYLFILNLGHN-DISGS 671 (768)
T ss_dssp TTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSC----CBSCCCGGGGGCTTCCEEECCSS-CCCSC
T ss_pred ccccchhhhccccccccccccceecccCchhhhccccccEEECcCCc----ccccCCHHHhccccCCEEeCcCC-ccCCC
Confidence 111000 112234789999999995 34677889999999999999996 34445
Q ss_pred ccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCCCCCCcccccceeccCCchHH---
Q 048507 1321 FPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFPEKGLPSSLLQLSIYRCPLIA--- 1397 (1448)
Q Consensus 1321 ~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~i~~c~~l~--- 1397 (1448)
+|. .+..+++|+.|+|++|...+.+|..+.++++|++|++++|+..+.+|..+.+.++..+.+.|||.++
T Consensus 672 ip~-------~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 672 IPD-------EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp CCG-------GGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT
T ss_pred CCh-------HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCC
Confidence 554 4578999999999998888899999999999999999999988899998888899999999987655
Q ss_pred -HhhhcCCCCCCccccCcceEE
Q 048507 1398 -EKCRKDGGQYWDLLTHIPHVE 1418 (1448)
Q Consensus 1398 -~~~~~~~~~~~~~i~~i~~v~ 1418 (1448)
..|..+.+.+|++|+|+|+++
T Consensus 745 l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 745 LPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp SCCCCSCC--------------
T ss_pred CcCCCCCccCCCCCCCCccccC
Confidence 379999999999999999875
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.3e-44 Score=461.77 Aligned_cols=604 Identities=19% Similarity=0.121 Sum_probs=379.8
Q ss_pred CceeEEEeCCCCccc----cCccccCCccceEEeccCccccccChhhhccccccEEeccCCchhhcccc--cccccCCCC
Q 048507 595 QRLRVFSLRGYRIDE----LPDSIGDLRYFRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCA--DMGNLAKLH 668 (1448)
Q Consensus 595 ~~L~~L~L~~n~i~~----lp~~i~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~--~i~~L~~L~ 668 (1448)
.+++.|+|+++.+.. +|+.|.++++|++++++.+.+..+|+.|+.+++|++|+|++|...+.+|. .++++++|+
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~ 129 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLK 129 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCC
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCC
Confidence 579999999998864 88899999999999999999988899999999999999999987788888 899999999
Q ss_pred eeeecCCCCcccccccc-CcccccccccceecccCCCCCccccccccccCceeEEeecCCccchhhhHHhhcCCCCCCCe
Q 048507 669 HLKNSNTKSLEEMPVGI-GRLTSLQTLCNFVVGQGSGSGLRELKLLTHLHGTLKISKLENVKCVGDAMEAQMDGKKNLKE 747 (1448)
Q Consensus 669 ~L~l~~~~~l~~~p~~i-~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~ 747 (1448)
+|++++|.+...+|..+ +++++|++|+...+. +.. ........+.++++|++
T Consensus 130 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~------------------------l~~---~~~~~~~~~~~l~~L~~ 182 (768)
T 3rgz_A 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS------------------------ISG---ANVVGWVLSDGCGELKH 182 (768)
T ss_dssp EEECCSSEEECCSSCCSCCCCTTCSEEECCSSC------------------------CEE---ETHHHHHHTTCCTTCCE
T ss_pred EEECcCCccCCcCCHHHhccCCCCCEEECCCCc------------------------cCC---cCChhhhhhccCCCCCE
Confidence 99999998555666554 677777777331110 000 00000111344555555
Q ss_pred EEEEeecCCCCCCChhhhhHHhhhccCCCCCCcceeEEeceecCCCCCceEeCccccCCCCCCCCCccceeecccccccc
Q 048507 748 LSLNWTCSTDGSSSREVETEMGVLDMLKPHTNLEQFCIKGYGVSGMSRVKRLGSEFYGNDSPIPFPCLETLLFENMQEWE 827 (1448)
Q Consensus 748 L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~l~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 827 (1448)
|++++ |.+.+... ...+++|++|++.++.- .
T Consensus 183 L~Ls~-----------------------------------n~l~~~~~-------------~~~l~~L~~L~Ls~n~l-~ 213 (768)
T 3rgz_A 183 LAISG-----------------------------------NKISGDVD-------------VSRCVNLEFLDVSSNNF-S 213 (768)
T ss_dssp EECCS-----------------------------------SEEESCCB-------------CTTCTTCCEEECCSSCC-C
T ss_pred EECCC-----------------------------------CcccccCC-------------cccCCcCCEEECcCCcC-C
Confidence 55544 33222100 01133333333333210 0
Q ss_pred ccccCCCcccCccCcccceeecccCcccccCCCCCCCCccEEEEccccCcccccccccccceeecccccceeeecccccC
Q 048507 828 DWIPHGFSQGVEGFPKLRELQILSCSKLQGTFPEHLPALEKLVIKGCEELSVLVSSLPALCKLQIGGCKKVVWRSATDHL 907 (1448)
Q Consensus 828 ~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 907 (1448)
...+ ..+.+++|++|++++| .+++.+| ..+..+++|++|++++|........
T Consensus 214 ~~~~-----~l~~l~~L~~L~Ls~n-~l~~~~~------------------~~l~~l~~L~~L~Ls~n~l~~~~~~---- 265 (768)
T 3rgz_A 214 TGIP-----FLGDCSALQHLDISGN-KLSGDFS------------------RAISTCTELKLLNISSNQFVGPIPP---- 265 (768)
T ss_dssp SCCC-----BCTTCCSCCEEECCSS-CCCSCHH------------------HHTTTCSSCCEEECCSSCCEESCCC----
T ss_pred CCCc-----ccccCCCCCEEECcCC-cCCCccc------------------HHHhcCCCCCEEECCCCcccCccCc----
Confidence 0000 0244556666666665 3333333 1233444555555555432210000
Q ss_pred CCccccccccCCccccccCccccccchhhhhhccccccceeeccCCccccccCCcceEeecCCCCccccchhhhhHHHhh
Q 048507 908 GSQNSVVCRDTSNQVFLAGPLKLRLPKLEELILSTKEQTYIWKSHDGLLQDICSLKRLTIDSCPTLQSLVAEEEKDQQQQ 987 (1448)
Q Consensus 908 ~~l~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~i~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 987 (1448)
..+++|++|++++|.....+|..
T Consensus 266 -------------------------------------------------~~l~~L~~L~L~~n~l~~~ip~~-------- 288 (768)
T 3rgz_A 266 -------------------------------------------------LPLKSLQYLSLAENKFTGEIPDF-------- 288 (768)
T ss_dssp -------------------------------------------------CCCTTCCEEECCSSEEEESCCCC--------
T ss_pred -------------------------------------------------cccCCCCEEECcCCccCCccCHH--------
Confidence 02233333444333221122211
Q ss_pred hhhhccccceEEecccCCccccccccCccCCcceeeeccCCCCcccCC--CCCccccceeEecccCCCCccchhhccCCC
Q 048507 988 LCELSCRLEYLELNECKGLVKLPQSSLSLSSLREIEICGCSSLVSFPE--VALPAKLRIISINSCDALKWLPEAWMCDFN 1065 (1448)
Q Consensus 988 l~~~~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~lp~~~~~~~~ 1065 (1448)
+...+++|++|++++|...+.+|..+..+++|++|++++|.....+|. +..+++|++|++++|...+.+|..+. .+
T Consensus 289 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~--~l 366 (768)
T 3rgz_A 289 LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT--NL 366 (768)
T ss_dssp SCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHH--HH
T ss_pred HHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHH--hh
Confidence 001123444444444444444444455555555555555433333332 23344555555555544444444332 12
Q ss_pred C-CcceEEEecCCCcccccC-CcC--CcCccEEEEecCCCCcccccccccccccCCccCCCCccceeeccCCCCcccccc
Q 048507 1066 S-SLEILSIECCRSLTYIAG-VQL--PPSLKRLYIEFCDNIRTLTVEEGVQRSSSSRRCTSSLLEELDINSCPSLTCIFS 1141 (1448)
Q Consensus 1066 ~-~L~~L~l~~c~~l~~~~~-~~~--~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~ 1141 (1448)
+ +|+.|++++|.....++. ... +++|++|++++|.....++ .....+++|+.|++++|.-
T Consensus 367 ~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p----------~~l~~l~~L~~L~Ls~N~l------ 430 (768)
T 3rgz_A 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP----------PTLSNCSELVSLHLSFNYL------ 430 (768)
T ss_dssp TTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC----------GGGGGCTTCCEEECCSSEE------
T ss_pred hcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC----------HHHhcCCCCCEEECcCCcc------
Confidence 2 555555555432222211 111 3455555555553222221 1122345677777777632
Q ss_pred cCCCchhhhccccCCCCccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCcc
Q 048507 1142 KNELPATLESLEVGNLPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLV 1221 (1448)
Q Consensus 1142 ~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~ 1221 (1448)
.+..|..+..+ ++|++|++++|...+.+|..+..+++|++|++++|.+.+.+|..+.++++|++|+|++|+..+
T Consensus 431 ~~~~p~~l~~l------~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 504 (768)
T 3rgz_A 431 SGTIPSSLGSL------SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504 (768)
T ss_dssp ESCCCGGGGGC------TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred cCcccHHHhcC------CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCC
Confidence 12344444444 399999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccCCCCCCCCCccEEEecCccCccccccccCCCCcccceec-ccCCC-ccccCCC-CCccc-------------------
Q 048507 1222 SFPKGGLPGAKLTRLEISDCNRLEALPKGLHNLKSLQELRI-GVELP-SLEEDGL-PTNLH------------------- 1279 (1448)
Q Consensus 1222 ~lp~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~-~~~~~~~-~~~L~------------------- 1279 (1448)
.+|..+..+++|++|+|++|...+.+|..+.++++|+.|++ +|.+. .+|...+ ...+.
T Consensus 505 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (768)
T 3rgz_A 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCC
T ss_pred cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccc
Confidence 99999999999999999999999999999999999999999 45443 2332110 01111
Q ss_pred ---------------------------eeeecccccccccccccCCccccCCCccEEEEecCCCcCccccccccccCCCC
Q 048507 1280 ---------------------------SLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDMVSFPLEDKRLGTAL 1332 (1448)
Q Consensus 1280 ---------------------------~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~p~~~~~~~~~~ 1332 (1448)
.++++.| ...+..+..+..+++|+.|++++| ...+.+|. .+
T Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~----~~~g~~~~~~~~l~~L~~LdLs~N-~l~g~ip~-------~l 652 (768)
T 3rgz_A 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR----VYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIPK-------EI 652 (768)
T ss_dssp TTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC----EEEEECCCSCSSSBCCCEEECCSS-CCBSCCCG-------GG
T ss_pred ccccccccccccccccchhhhccccccccccccc----eecccCchhhhccccccEEECcCC-cccccCCH-------HH
Confidence 1111112 122445567888999999999996 34445554 45
Q ss_pred CCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCCCC-CCcccccceeccCCch
Q 048507 1333 PLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFPEK-GLPSSLLQLSIYRCPL 1395 (1448)
Q Consensus 1333 ~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~i~~c~~ 1395 (1448)
+.+++|+.|+|++|...+.+|..++++++|++|++++|+..+.+|.. +.+++|+.|++++|+.
T Consensus 653 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 78999999999998888899999999999999999998877788875 4578999999999974
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.3e-43 Score=435.56 Aligned_cols=314 Identities=18% Similarity=0.246 Sum_probs=255.9
Q ss_pred eccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHc--CcccccccceEEEEEeCCcc--CHHHHHHHH
Q 048507 191 YGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYN--DKRVQDHFDLKAWTCVSDDF--DVKGLTKTI 266 (1448)
Q Consensus 191 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i 266 (1448)
|||++++++|.++|... .+...++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.. ++..+++.|
T Consensus 131 ~GR~~~~~~l~~~L~~~---~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc---cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 59999999999999764 234679999999999999999999998 67889999999999999885 789999999
Q ss_pred HHhccCCCC-------CCCCHHHHHHHHHHHhCCc-cEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchhhhh
Q 048507 267 LRSVTKQTI-------DDSDLNLLQEELKKKLSQK-KFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQEVAD 338 (1448)
Q Consensus 267 ~~~l~~~~~-------~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 338 (1448)
+++++.... +..+.+.+...+++.++++ ||||||||||+.+...|... +||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~--------~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE--------LRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH--------TTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhccccc--------CCCEEEEEcCCHHHHH
Confidence 999976521 2335567789999999996 99999999998633234321 6999999999999998
Q ss_pred ccC-CcceEeCCCCCHHHHHHHHhhcccCCc--hhhHHHHHHHHHhcCCchHHHHHHHhhhccCCChhHHHHHHhccccC
Q 048507 339 IMG-TASAYQLKKLSIDDCLAVVAQHSLGSD--KLLEEIGKKIVAKCDGLPLAAQTLGGLLRGKCDRSDWEDLLSCKIWN 415 (1448)
Q Consensus 339 ~~~-~~~~~~l~~l~~~~a~~l~~~~~~~~~--~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w~~~~~~~~~~ 415 (1448)
.++ ....|+|++|+.++||+||.+++++.. +..++++++|+++|+|+||||+++|+.++.+ . ..|...+....+.
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~l~~ 357 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNKLES 357 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHHhhc
Confidence 776 346799999999999999999998765 5677899999999999999999999999776 2 2333333333332
Q ss_pred CCCcccchhhHHHHhhhcCChhhHHHHh-----------hhcccCCCceeCHHHHHHHHHHc--CCCcCCCCCCChHHHH
Q 048507 416 LPEERCDIIPALRVSYYYLSAPLKQCFA-----------YCSLFPKDYEFEEEEIILLWCAS--GFLDHKESGNPNEDLG 482 (1448)
Q Consensus 416 ~~~~~~~i~~~l~~sy~~L~~~~k~~f~-----------~~a~fp~~~~i~~~~li~~w~~~--g~~~~~~~~~~~~~~~ 482 (1448)
.. ...+.+++.+||+.||+++|.||+ |||+||+++.|+ +.+|+|+ ||+.........++++
T Consensus 358 ~~--~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~ 431 (549)
T 2a5y_B 358 RG--LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVA 431 (549)
T ss_dssp HC--SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHH
T ss_pred cc--HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHH
Confidence 11 246888999999999999999999 999999999999 7899999 9997654456778888
Q ss_pred HHHHHHHHhCCcccccCC-CcceEEEeHHHHHHHHHHhccceE
Q 048507 483 RKFFQELRGRSFFQQSSN-NISRFVMHDLINDLARWAAGETYF 524 (1448)
Q Consensus 483 ~~~~~~L~~~sll~~~~~-~~~~~~mH~lv~~~a~~~~~~~~~ 524 (1448)
+ ||++|+++||++.... ...+|+|||+||+||+.++.++++
T Consensus 432 ~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 432 D-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp H-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred H-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 7 9999999999997543 456899999999999998877653
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.2e-37 Score=401.86 Aligned_cols=228 Identities=17% Similarity=0.108 Sum_probs=138.6
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccccccccC-cccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEe
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILP-SGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEI 1238 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p-~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l 1238 (1448)
+|+.|++++|...+..|..+..+++|++|++++|.+.+.+| ..+.++++|++|++++|+.....+..+..+++|+.|++
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 45555555555555555555555556666665555554443 34555555566666555443333444444555666665
Q ss_pred cCccCc--cccccccCCCCcccceec-ccCCCccccCC--CCCccceeeecccccccccc----cccCCccccCCCccEE
Q 048507 1239 SDCNRL--EALPKGLHNLKSLQELRI-GVELPSLEEDG--LPTNLHSLGIRGNMEIWKST----IERGRGFHRFSSLQHL 1309 (1448)
Q Consensus 1239 ~~~~~~--~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~--~~~~L~~L~l~~n~~~~~~~----~~~~~~~~~l~~L~~L 1309 (1448)
++|... +.+|..+.++++|++|++ +|.+..++... ..++|+.|++++|....... ..+...+.++++|++|
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L 541 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence 555432 345555555556666665 44455444432 23556666666654221000 0122347888999999
Q ss_pred EEecCCCcCccccccccccCCCCCCCCCcCeEEEccCCCCcccccc-ccCCCCCCeEeecCCCCCCcCCCCC---Ccccc
Q 048507 1310 TIEGCDDDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSS-IVDLQNLTELRLLNCPKLKYFPEKG---LPSSL 1385 (1448)
Q Consensus 1310 ~l~~c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~~---~~~~L 1385 (1448)
++++| .+..+|.. .|..+++|+.|++++| .++.+|.. +.++++|+.|++++| .++.+++.. ..++|
T Consensus 542 ~L~~N--~l~~i~~~------~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L 611 (680)
T 1ziw_A 542 NLESN--GFDEIPVE------VFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNL 611 (680)
T ss_dssp ECCSS--CCCCCCTT------TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTC
T ss_pred ECCCC--CCCCCCHH------HcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhccccccc
Confidence 99985 45566633 3678899999999884 67777765 578899999999996 577777653 35789
Q ss_pred cceeccCCchHH
Q 048507 1386 LQLSIYRCPLIA 1397 (1448)
Q Consensus 1386 ~~L~i~~c~~l~ 1397 (1448)
+.|++++||..+
T Consensus 612 ~~l~l~~N~~~c 623 (680)
T 1ziw_A 612 TELDMRFNPFDC 623 (680)
T ss_dssp SEEECTTCCCCB
T ss_pred CEEEccCCCccc
Confidence 999999988654
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.2e-35 Score=380.56 Aligned_cols=100 Identities=21% Similarity=0.258 Sum_probs=75.9
Q ss_pred CceeEEEeCCCCccccCc-cccCCccceEEeccCcccccc-ChhhhccccccEEeccCCchhhcccc-cccccCCCCeee
Q 048507 595 QRLRVFSLRGYRIDELPD-SIGDLRYFRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCDRLKKLCA-DMGNLAKLHHLK 671 (1448)
Q Consensus 595 ~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~lp~-~i~~L~~L~~L~ 671 (1448)
++|++|+|++|.++.+|. .|+++++|++|+|++|.+..+ |..|+++++|++|+|++| .+..+|. .|+++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEE
Confidence 578888888888887754 578888888888888888755 567888888888888886 4555665 478888888888
Q ss_pred ecCCCCccccc-cccCcccccccccc
Q 048507 672 NSNTKSLEEMP-VGIGRLTSLQTLCN 696 (1448)
Q Consensus 672 l~~~~~l~~~p-~~i~~L~~L~~L~~ 696 (1448)
+++|. +..+| ..++++++|++|+.
T Consensus 104 L~~n~-l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 104 LMSNS-IQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp CCSSC-CCCCCSCTTTTCTTCCEEEC
T ss_pred CCCCc-cCccChhHccccCCCCEEEC
Confidence 88887 56665 45778888887743
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.7e-35 Score=369.43 Aligned_cols=296 Identities=16% Similarity=0.142 Sum_probs=172.8
Q ss_pred ccceEEecccCCccccccccCccCCcceeeeccCCCCcccCC-CCCccccceeEecccCCCCccchhhccCCCCCcceEE
Q 048507 994 RLEYLELNECKGLVKLPQSSLSLSSLREIEICGCSSLVSFPE-VALPAKLRIISINSCDALKWLPEAWMCDFNSSLEILS 1072 (1448)
Q Consensus 994 ~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~L~~L~ 1072 (1448)
+|+.|++++|......+..+..+++|++|++++| .+..+|. +..+++|++|++++|...+..|..+. .+++|++|+
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~ 331 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISAS--NFPSLTHLS 331 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGG--GCTTCSEEE
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhh--ccCcCCEEE
Confidence 5666777776554444455777788888888876 4455654 44466777777777665444443333 356666666
Q ss_pred EecCCCcccccC--CcCCcCccEEEEecCCCCcccccccccccccCCccCCCCccceeeccCCCCcccccccCCCchhhh
Q 048507 1073 IECCRSLTYIAG--VQLPPSLKRLYIEFCDNIRTLTVEEGVQRSSSSRRCTSSLLEELDINSCPSLTCIFSKNELPATLE 1150 (1448)
Q Consensus 1073 l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~ 1150 (1448)
+++|.....++. +..++
T Consensus 332 l~~n~~~~~~~~~~~~~l~------------------------------------------------------------- 350 (606)
T 3t6q_A 332 IKGNTKRLELGTGCLENLE------------------------------------------------------------- 350 (606)
T ss_dssp CCSCSSCCBCCSSTTTTCT-------------------------------------------------------------
T ss_pred CCCCCcccccchhhhhccC-------------------------------------------------------------
Confidence 665532222211 11111
Q ss_pred ccccCCCCccccEEEEecCCCchhh--hhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCC-C
Q 048507 1151 SLEVGNLPESLKSLRVWDCPKLESI--AERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKG-G 1227 (1448)
Q Consensus 1151 ~l~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~-~ 1227 (1448)
+|++|++++|...+.. +..+..+++|++|++++|.+.+..|..+..+++|++|++++|......|.. +
T Consensus 351 ---------~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 421 (606)
T 3t6q_A 351 ---------NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421 (606)
T ss_dssp ---------TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTT
T ss_pred ---------cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhh
Confidence 4555555555544433 455666777777777776666666666677777777777776554444433 5
Q ss_pred CCCCCccEEEecCccCccccccccCCCCcccceec-ccCCCccccCCCCCccceeeecccccccccccccCCccccCCCc
Q 048507 1228 LPGAKLTRLEISDCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSL 1306 (1448)
Q Consensus 1228 ~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L 1306 (1448)
..+++|++|++++|...+..|..+..+++|++|++ ++.+... .......+..+++|
T Consensus 422 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------------------~~~~~~~~~~l~~L 478 (606)
T 3t6q_A 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG-----------------------NIQKTNSLQTLGRL 478 (606)
T ss_dssp TTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGG-----------------------EECSSCGGGGCTTC
T ss_pred hCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcc-----------------------ccccchhhccCCCc
Confidence 55677777777777666666666666666666666 2322210 01112345566666
Q ss_pred cEEEEecCCCcCccccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCCCCC--Cccc
Q 048507 1307 QHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFPEKG--LPSS 1384 (1448)
Q Consensus 1307 ~~L~l~~c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~--~~~~ 1384 (1448)
++|++++| .+..++ +..+..+++|+.|++++|...+..|..+.+++.| .|++++|+ ++.+|+.. ..++
T Consensus 479 ~~L~Ls~n--~l~~~~------~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~-l~~~~~~~~~~l~~ 548 (606)
T 3t6q_A 479 EILVLSFC--DLSSID------QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH-ISIILPSLLPILSQ 548 (606)
T ss_dssp CEEECTTS--CCCEEC------TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC-CCCCCGGGHHHHHT
T ss_pred cEEECCCC--ccCccC------hhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc-ccccCHhhcccCCC
Confidence 77777664 222221 2335666777777777765555566677777777 77777754 45554432 2467
Q ss_pred ccceeccCCch
Q 048507 1385 LLQLSIYRCPL 1395 (1448)
Q Consensus 1385 L~~L~i~~c~~ 1395 (1448)
|+.|++++||.
T Consensus 549 L~~L~l~~N~~ 559 (606)
T 3t6q_A 549 QRTINLRQNPL 559 (606)
T ss_dssp SSEEECTTCCE
T ss_pred CCEEeCCCCCc
Confidence 77777777764
No 7
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=6.4e-36 Score=365.87 Aligned_cols=284 Identities=18% Similarity=0.249 Sum_probs=227.5
Q ss_pred EeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccce-EEEEEeCCccCHHHHHHHHHH
Q 048507 190 VYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDL-KAWTCVSDDFDVKGLTKTILR 268 (1448)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~ 268 (1448)
.|||++++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..+++
T Consensus 130 ~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4999999999999997632 3689999999999999999999987778899986 999999999998888888777
Q ss_pred hccCC------CCC-----CCCHHHHHHHHHHHh---CCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCch
Q 048507 269 SVTKQ------TID-----DSDLNLLQEELKKKL---SQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQ 334 (1448)
Q Consensus 269 ~l~~~------~~~-----~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 334 (1448)
.+... ..+ ..+.+.+.+.+++.+ .++|+||||||||+. ..|+.+ + +||+||||||++
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd~ 275 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSCS
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccCh
Confidence 54211 001 112345566677765 689999999999984 566654 2 689999999999
Q ss_pred hhhhccCCcceEeCC------CCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCchHHHHHHHhhhccCC-ChhHHHH
Q 048507 335 EVADIMGTASAYQLK------KLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGLPLAAQTLGGLLRGKC-DRSDWED 407 (1448)
Q Consensus 335 ~v~~~~~~~~~~~l~------~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~-~~~~w~~ 407 (1448)
.++..+.....|+++ +|+.+||++||.++. +.. ..+...+| |+|+||||+++|+.|+.+. ..+.|+.
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~--~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~ 349 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR--PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKH 349 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC--TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC--HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhc
Confidence 988644433456776 999999999999874 322 22333333 9999999999999999874 5677865
Q ss_pred HHhccccCCCCcccchhhHHHHhhhcCChhh-HHHHhhhcccCCCceeCHHHHHHHHHHcCCCcCCCCCCChHHHHHHHH
Q 048507 408 LLSCKIWNLPEERCDIIPALRVSYYYLSAPL-KQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKESGNPNEDLGRKFF 486 (1448)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~~f~~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~ 486 (1448)
. ....+..++++||+.||++. |+||++||+||+++.|+.+.++.+|.++| ++.++.++
T Consensus 350 ~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~L 408 (1221)
T 1vt4_I 350 V----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVVV 408 (1221)
T ss_dssp C----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHH
T ss_pred C----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHHHHHH
Confidence 2 12578999999999999999 99999999999999999999999998776 23588899
Q ss_pred HHHHhCCcccccCCCcceEEEeHHHHHHH
Q 048507 487 QELRGRSFFQQSSNNISRFVMHDLINDLA 515 (1448)
Q Consensus 487 ~~L~~~sll~~~~~~~~~~~mH~lv~~~a 515 (1448)
++|+++|||+... +..+|+|||++++++
T Consensus 409 ~eLvdRSLLq~d~-~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 409 NKLHKYSLVEKQP-KESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHTSSSSSBCS-SSSEEBCCCHHHHHH
T ss_pred HHHHhhCCEEEeC-CCCEEEehHHHHHHh
Confidence 9999999999853 346899999999855
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.4e-33 Score=356.61 Aligned_cols=200 Identities=18% Similarity=0.120 Sum_probs=105.6
Q ss_pred cccEEEEecCCCchh--hhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccC-CCCCCCCCccEE
Q 048507 1160 SLKSLRVWDCPKLES--IAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFP-KGGLPGAKLTRL 1236 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~--~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp-~~~~~~~~L~~L 1236 (1448)
+|++|++++|...+. +|..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|...+..| ..+..+++|++|
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence 555555555544433 25556666667777776665433 45666666677777777665444444 345556667777
Q ss_pred EecCccCccccccccCCCCcccceec-ccCCCccccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecCC
Q 048507 1237 EISDCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCD 1315 (1448)
Q Consensus 1237 ~l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 1315 (1448)
++++|...+..|..+.++++|++|++ ++.+.. ...+..+..+++|++|++++|
T Consensus 430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------~~~~~~~~~l~~L~~L~Ls~n- 483 (606)
T 3vq2_A 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD-------------------------NTLSNVFANTTNLTFLDLSKC- 483 (606)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG-------------------------GEECSCCTTCTTCCEEECTTS-
T ss_pred ECcCCCCCccchhhhcCCCCCCEEECCCCcCCC-------------------------cchHHhhccCCCCCEEECCCC-
Confidence 77776666666666666666666665 222211 012233444455555555553
Q ss_pred CcCccccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCCCC--CCcccccceeccCC
Q 048507 1316 DDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFPEK--GLPSSLLQLSIYRC 1393 (1448)
Q Consensus 1316 ~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~i~~c 1393 (1448)
.+..++ +..+..+++|+.|++++|...+..|..+.++++|+.|++++|+ ++.+|.. .++++|+.|++++|
T Consensus 484 -~l~~~~------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 484 -QLEQIS------WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp -CCCEEC------TTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSC
T ss_pred -cCCccC------hhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCC
Confidence 111111 1223445555555555543333335555555556666665543 5555543 12334566666555
Q ss_pred c
Q 048507 1394 P 1394 (1448)
Q Consensus 1394 ~ 1394 (1448)
|
T Consensus 556 ~ 556 (606)
T 3vq2_A 556 S 556 (606)
T ss_dssp C
T ss_pred C
Confidence 4
No 9
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.5e-34 Score=399.67 Aligned_cols=312 Identities=20% Similarity=0.289 Sum_probs=250.9
Q ss_pred ccccCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccc-cccc-ceEEEEEeCCcc--CH
Q 048507 184 LVTEAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRV-QDHF-DLKAWTCVSDDF--DV 259 (1448)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~--~~ 259 (1448)
+..+..||||++++++|.++|... ++..++|+|+||||+||||||+++|++.+. ..+| +.++|+++++.. +.
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~----~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 195 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKL----NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGL 195 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTT----TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhc----cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHH
Confidence 344567999999999999999754 236799999999999999999999987543 4444 678899998854 34
Q ss_pred HHHHHHHHHhccCCCC----CCCCHHHHHHHHHHHhCCc--cEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCc
Q 048507 260 KGLTKTILRSVTKQTI----DDSDLNLLQEELKKKLSQK--KFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRN 333 (1448)
Q Consensus 260 ~~~~~~i~~~l~~~~~----~~~~~~~~~~~l~~~l~~~--~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 333 (1448)
...+..++..+..... ...+.+.+.+.++..+.++ |+||||||||+. ..|..+ ++|++||||||+
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR~ 266 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTRD 266 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEESS
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHhh-------cCCCEEEEEcCC
Confidence 4556667777654332 3456788889999999877 999999999875 444443 478999999999
Q ss_pred hhhhhc-cCCcceEeCCC-CCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCchHHHHHHHhhhccCCChhHHHHHHhc
Q 048507 334 QEVADI-MGTASAYQLKK-LSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGLPLAAQTLGGLLRGKCDRSDWEDLLSC 411 (1448)
Q Consensus 334 ~~v~~~-~~~~~~~~l~~-l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w~~~~~~ 411 (1448)
+.++.. .+....+++++ |+.+||+++|...+....+..++.+++|+++|+|+||||+++|++|+.+. ..|+..++.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~ 344 (1249)
T 3sfz_A 267 KSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQ 344 (1249)
T ss_dssp TTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHH
T ss_pred HHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHH
Confidence 999854 45567899996 99999999999988766666677899999999999999999999999864 467776654
Q ss_pred cccCC--------CCcccchhhHHHHhhhcCChhhHHHHhhhcccCCCceeCHHHHHHHHHHcCCCcCCCCCCChHHHHH
Q 048507 412 KIWNL--------PEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKESGNPNEDLGR 483 (1448)
Q Consensus 412 ~~~~~--------~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~ 483 (1448)
..... ......+..++.+||+.||+++|.||+|||+||+++.|+++.++.+|.++ ++.++
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~ 412 (1249)
T 3sfz_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVE 412 (1249)
T ss_dssp HHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHH
T ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHH
Confidence 32211 11124588999999999999999999999999999999999999999543 46789
Q ss_pred HHHHHHHhCCcccccCC-CcceEEEeHHHHHHHHHHhccc
Q 048507 484 KFFQELRGRSFFQQSSN-NISRFVMHDLINDLARWAAGET 522 (1448)
Q Consensus 484 ~~~~~L~~~sll~~~~~-~~~~~~mH~lv~~~a~~~~~~~ 522 (1448)
+++++|+++||++...+ ...+|+||++||+||+..+.++
T Consensus 413 ~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 413 DILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 99999999999997543 3346999999999999987765
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.5e-33 Score=358.52 Aligned_cols=275 Identities=16% Similarity=0.113 Sum_probs=167.8
Q ss_pred cCccCCcceeeeccCCCCcccCCCCCccccceeEecccCCCCccchhhccCCCCCcceEEEecCCCcccccCCcCCcCcc
Q 048507 1013 SLSLSSLREIEICGCSSLVSFPEVALPAKLRIISINSCDALKWLPEAWMCDFNSSLEILSIECCRSLTYIAGVQLPPSLK 1092 (1448)
Q Consensus 1013 ~~~l~~L~~L~L~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~ 1092 (1448)
+..+++|+.|++++| .+..+|.+..+++|+.|++++|.. +.+|. + .+++|++|++++|..+..+ ....+++|+
T Consensus 281 ~~~l~~L~~L~l~~~-~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~-~---~l~~L~~L~l~~n~~~~~~-~~~~l~~L~ 353 (606)
T 3vq2_A 281 FHCLANVSAMSLAGV-SIKYLEDVPKHFKWQSLSIIRCQL-KQFPT-L---DLPFLKSLTLTMNKGSISF-KKVALPSLS 353 (606)
T ss_dssp CGGGTTCSEEEEESC-CCCCCCCCCTTCCCSEEEEESCCC-SSCCC-C---CCSSCCEEEEESCSSCEEC-CCCCCTTCC
T ss_pred cccCCCCCEEEecCc-cchhhhhccccccCCEEEcccccC-ccccc-C---CCCccceeeccCCcCccch-hhccCCCCC
Confidence 555666666666664 334555445556666666666655 55552 2 3666777777666544444 333455666
Q ss_pred EEEEecCCCCcccccccccccccCCccCCCCccceeeccCCCCcccccccCCCchhhhccccCCCCccccEEEEecCCCc
Q 048507 1093 RLYIEFCDNIRTLTVEEGVQRSSSSRRCTSSLLEELDINSCPSLTCIFSKNELPATLESLEVGNLPESLKSLRVWDCPKL 1172 (1448)
Q Consensus 1093 ~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~ 1172 (1448)
+|++++|.- ..+. ..+..+..+ ++|++|++++|...
T Consensus 354 ~L~ls~n~l-~~~~-------------------------------------~~~~~~~~~------~~L~~L~L~~n~l~ 389 (606)
T 3vq2_A 354 YLDLSRNAL-SFSG-------------------------------------CCSYSDLGT------NSLRHLDLSFNGAI 389 (606)
T ss_dssp EEECCSSCE-EEEE-------------------------------------ECCHHHHCC------SCCCEEECCSCSEE
T ss_pred EEECcCCcc-CCCc-------------------------------------chhhhhccC------CcccEeECCCCccc
Confidence 666666531 1000 001111111 26777777776533
Q ss_pred hhhhhhcccCCccceeeecccccccccC-cccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEecCccCcc-ccccc
Q 048507 1173 ESIAERLDNNTSLEIIRIAYCENLKILP-SGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEISDCNRLE-ALPKG 1250 (1448)
Q Consensus 1173 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~p-~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~~~~~~~-~~p~~ 1250 (1448)
.+|..+..+++|++|++++|.+.+..| ..+..+++|++|++++|...+..|..+..+++|++|++++|...+ .+|..
T Consensus 390 -~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 468 (606)
T 3vq2_A 390 -IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468 (606)
T ss_dssp -EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred -cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHh
Confidence 355677778888888888887777666 567778888888888877666677777777888888888877666 36777
Q ss_pred cCCCCcccceec-ccCCCccccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecCCCcCccccccccccC
Q 048507 1251 LHNLKSLQELRI-GVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDMVSFPLEDKRLG 1329 (1448)
Q Consensus 1251 l~~l~~L~~L~l-~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~p~~~~~~~ 1329 (1448)
+..+++|++|++ ++.+. ...+..+.++++|++|++++| .+..++ +
T Consensus 469 ~~~l~~L~~L~Ls~n~l~--------------------------~~~~~~~~~l~~L~~L~Ls~N--~l~~~~------~ 514 (606)
T 3vq2_A 469 FANTTNLTFLDLSKCQLE--------------------------QISWGVFDTLHRLQLLNMSHN--NLLFLD------S 514 (606)
T ss_dssp CTTCTTCCEEECTTSCCC--------------------------EECTTTTTTCTTCCEEECCSS--CCSCEE------G
T ss_pred hccCCCCCEEECCCCcCC--------------------------ccChhhhcccccCCEEECCCC--cCCCcC------H
Confidence 777777777766 33322 223345566666777777664 222221 2
Q ss_pred CCCCCCCCcCeEEEccCCCCccccccccCCC-CCCeEeecCCCCCC
Q 048507 1330 TALPLPASLTTLWIYNFPNLERLSSSIVDLQ-NLTELRLLNCPKLK 1374 (1448)
Q Consensus 1330 ~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~-~L~~L~l~~c~~l~ 1374 (1448)
..+..+++|+.|++++| .++.+|..+..++ +|+.|++++|+...
T Consensus 515 ~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 515 SHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp GGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred HHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCCccc
Confidence 23456677777777774 4667777777776 47777777766443
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2e-33 Score=357.38 Aligned_cols=486 Identities=14% Similarity=0.143 Sum_probs=269.1
Q ss_pred ceeEEEeCCCCcccc-CccccCCccceEEeccCcccccc-ChhhhccccccEEeccCCchhhcccccccccCCCCeeeec
Q 048507 596 RLRVFSLRGYRIDEL-PDSIGDLRYFRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNS 673 (1448)
Q Consensus 596 ~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~~L~~L~l~ 673 (1448)
.+++|+|++|.|+.+ |..|+++++|++|+|++|.+..+ |..|+++++|++|+|++|......|..|+++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 678899999998887 66888899999999999988855 6788889999999998886666667788889999999999
Q ss_pred CCCCcccc-ccccCcccccccccceecccCCCCCccccccccccCceeEEeecCCccchhhhHHhhcCCCCCCCeEEEEe
Q 048507 674 NTKSLEEM-PVGIGRLTSLQTLCNFVVGQGSGSGLRELKLLTHLHGTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNW 752 (1448)
Q Consensus 674 ~~~~l~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~ 752 (1448)
+|. +..+ |..++++++|++|+...+.. ..+ ....+..+++|+.|++
T Consensus 114 ~n~-i~~l~~~~~~~l~~L~~L~L~~n~l------------------------~~~------~~~~~~~l~~L~~L~L-- 160 (606)
T 3t6q_A 114 QTG-ISSIDFIPLHNQKTLESLYLGSNHI------------------------SSI------KLPKGFPTEKLKVLDF-- 160 (606)
T ss_dssp TSC-CSCGGGSCCTTCTTCCEEECCSSCC------------------------CCC------CCCTTCCCTTCCEEEC--
T ss_pred ccC-cccCCcchhccCCcccEEECCCCcc------------------------ccc------CcccccCCcccCEEEc--
Confidence 888 5655 45577777777773321110 000 0001112344444444
Q ss_pred ecCCCCCCChhhhhHHhhhccCCCCCCcceeEEeceecCCCCCceEeCccccCCCCCCCCCccceeeccccccccccccC
Q 048507 753 TCSTDGSSSREVETEMGVLDMLKPHTNLEQFCIKGYGVSGMSRVKRLGSEFYGNDSPIPFPCLETLLFENMQEWEDWIPH 832 (1448)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~l~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 832 (1448)
++|.+.++.. .
T Consensus 161 ---------------------------------~~n~l~~~~~------~------------------------------ 171 (606)
T 3t6q_A 161 ---------------------------------QNNAIHYLSK------E------------------------------ 171 (606)
T ss_dssp ---------------------------------CSSCCCEECH------H------------------------------
T ss_pred ---------------------------------ccCcccccCh------h------------------------------
Confidence 4443221100 0
Q ss_pred CCcccCccCcccc--eeecccCcccccCCCCCC--CCccEEEEccccCcccccccccccc--eeecccccceeeeccccc
Q 048507 833 GFSQGVEGFPKLR--ELQILSCSKLQGTFPEHL--PALEKLVIKGCEELSVLVSSLPALC--KLQIGGCKKVVWRSATDH 906 (1448)
Q Consensus 833 ~~~~~~~~~~~L~--~L~l~~c~~L~~~~p~~l--~~L~~L~l~~~~~l~~~~~~l~~L~--~L~l~~~~~~~~~~~~~~ 906 (1448)
..+.+++|+ .|++++| .+.+..|..+ .+|++|++++|..+...+..+..+. .+.+..+.....
T Consensus 172 ----~~~~l~~L~~l~L~l~~n-~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~------ 240 (606)
T 3t6q_A 172 ----DMSSLQQATNLSLNLNGN-DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD------ 240 (606)
T ss_dssp ----HHHTTTTCCSEEEECTTC-CCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCC------
T ss_pred ----hhhhhcccceeEEecCCC-ccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccc------
Confidence 011222333 3333333 2222222111 2344444444433322222222211 111111110000
Q ss_pred CCCccccccccCCccccccCccccccchhhhhhccccccceeeccCCccccccC--CcceEeecCCCCccccchhhhhHH
Q 048507 907 LGSQNSVVCRDTSNQVFLAGPLKLRLPKLEELILSTKEQTYIWKSHDGLLQDIC--SLKRLTIDSCPTLQSLVAEEEKDQ 984 (1448)
Q Consensus 907 ~~~l~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~i~~~~~~~~~~l~--~L~~L~l~~~~~l~~l~~~~~~~~ 984 (1448)
.......+..+. +|+.|++++| .++.++...+
T Consensus 241 ------------------------------------------~~i~~~~~~~l~~~~L~~L~l~~n-~l~~~~~~~~--- 274 (606)
T 3t6q_A 241 ------------------------------------------EDISPAVFEGLCEMSVESINLQKH-YFFNISSNTF--- 274 (606)
T ss_dssp ------------------------------------------CCCCGGGGGGGGGSEEEEEECTTC-CCSSCCTTTT---
T ss_pred ------------------------------------------cccChhHhchhhcCceeEEEeecC-ccCccCHHHh---
Confidence 000001111111 4555555553 3333333211
Q ss_pred HhhhhhhccccceEEecccCCccccccccCccCCcceeeeccCCCCcccC-CCCCccccceeEecccCCCCccchhhccC
Q 048507 985 QQQLCELSCRLEYLELNECKGLVKLPQSSLSLSSLREIEICGCSSLVSFP-EVALPAKLRIISINSCDALKWLPEAWMCD 1063 (1448)
Q Consensus 985 ~~~l~~~~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~~~-~~~~~~~L~~L~l~~~~~l~~lp~~~~~~ 1063 (1448)
..+++|++|++++|. ++.+|..+..+++|++|++++|......| .+..+++|++|++++|.....+|.... .
T Consensus 275 -----~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~ 347 (606)
T 3t6q_A 275 -----HCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL-E 347 (606)
T ss_dssp -----TTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT-T
T ss_pred -----ccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh-h
Confidence 123566666666643 34566666666677777776653332222 234456677777766665555554322 1
Q ss_pred CCCCcceEEEecCCCcccc---cCCcCCcCccEEEEecCCCCcccccccccccccCCccCCCCccceeeccCCCCccccc
Q 048507 1064 FNSSLEILSIECCRSLTYI---AGVQLPPSLKRLYIEFCDNIRTLTVEEGVQRSSSSRRCTSSLLEELDINSCPSLTCIF 1140 (1448)
Q Consensus 1064 ~~~~L~~L~l~~c~~l~~~---~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~ 1140 (1448)
.+++|++|++++|...... ..+..+++|++|++++|.-.... ......+++|+.|++++|.....
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------~~~~~~l~~L~~L~l~~n~l~~~-- 415 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK----------TEAFKECPQLELLDLAFTRLKVK-- 415 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEEC----------TTTTTTCTTCSEEECTTCCEECC--
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCC----------HHHhcCCccCCeEECCCCcCCCc--
Confidence 4667777777766432221 12345566777777666422111 11122345566666666532110
Q ss_pred ccCCCchhhhccccCCCCccccEEEEecCCCchhhhhhcccCCccceeeecccccccc---cCcccCCCCCccEEEcccC
Q 048507 1141 SKNELPATLESLEVGNLPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKI---LPSGLHNLRQLQEIEIRRC 1217 (1448)
Q Consensus 1141 ~~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~---~p~~l~~l~~L~~L~L~~~ 1217 (1448)
..+..+ ..+ ++|++|++++|...+..|..+..+++|++|++++|.+.+. .+..+..+++|++|++++|
T Consensus 416 ---~~~~~~-----~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 416 ---DAQSPF-----QNL-HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp ---TTCCTT-----TTC-TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred ---ccchhh-----hCc-ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence 000111 122 3788888888877777777788888888888888877652 2345777888888888887
Q ss_pred CCccccCCCCCCCCCccEEEecCccCccccccccCCCCcccceec-ccCCCcc
Q 048507 1218 GNLVSFPKGGLPGAKLTRLEISDCNRLEALPKGLHNLKSLQELRI-GVELPSL 1269 (1448)
Q Consensus 1218 ~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~ 1269 (1448)
...+..|..+..+++|++|++++|+..+..|..+.++++| +|++ +|.+..+
T Consensus 487 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~ 538 (606)
T 3t6q_A 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISII 538 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCC
T ss_pred ccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccccc
Confidence 6665556677777888888888888777777778877777 7777 4444443
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.8e-31 Score=345.86 Aligned_cols=517 Identities=15% Similarity=0.060 Sum_probs=273.8
Q ss_pred cCceeEEEeCCCCcccc-CccccCCccceEEeccCcc-cccc-ChhhhccccccEEeccCCchhhcccccccccCCCCee
Q 048507 594 LQRLRVFSLRGYRIDEL-PDSIGDLRYFRYLNLSGTE-IRTL-PESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHL 670 (1448)
Q Consensus 594 l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~Ls~n~-i~~l-p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~~L~~L 670 (1448)
.++|++|||++|.|+.+ |..|.++++|++|+|++|. +..+ |..|++|++|++|+|++|......|..|+++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 46778888888888766 6677888888888888874 4455 5777888888888888876555557778888888888
Q ss_pred eecCCCCccccccc--cCcccccccccceecccCCCCCccccccccccCceeEEeecCCccchhhhHHhhcCCCCCCCeE
Q 048507 671 KNSNTKSLEEMPVG--IGRLTSLQTLCNFVVGQGSGSGLRELKLLTHLHGTLKISKLENVKCVGDAMEAQMDGKKNLKEL 748 (1448)
Q Consensus 671 ~l~~~~~l~~~p~~--i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L 748 (1448)
++++|.....+|.. ++++++|++|+.. .+.+... .....+.++++|+.|
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls------------------------~N~l~~~-----~~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLS------------------------KNQIRSL-----YLHPSFGKLNSLKSI 153 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEE------------------------SCCCCCC-----CCCGGGGTCSSCCEE
T ss_pred eCcCCCCCcccccCccccccCCCCEEECC------------------------CCccccc-----ccchhHhhCCCCCEE
Confidence 88888743335544 6677777766321 1111110 011235566666666
Q ss_pred EEEeecCCCCCCChhhhhHHhhhccCCCC--CCcceeEEeceecCCCCCceEeCccccCCCCCCCCCccceeeccccccc
Q 048507 749 SLNWTCSTDGSSSREVETEMGVLDMLKPH--TNLEQFCIKGYGVSGMSRVKRLGSEFYGNDSPIPFPCLETLLFENMQEW 826 (1448)
Q Consensus 749 ~L~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~L~~L~l~~~~i~~l~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l 826 (1448)
++++|...... ...+.++ ++|+.|++++|.+.+.... .+..+..
T Consensus 154 ~Ls~N~i~~~~-----------~~~l~~l~~~~L~~L~L~~n~l~~~~~~----------------------~~~~~~~- 199 (844)
T 3j0a_A 154 DFSSNQIFLVC-----------EHELEPLQGKTLSFFSLAANSLYSRVSV----------------------DWGKCMN- 199 (844)
T ss_dssp EEESSCCCCCC-----------SGGGHHHHHCSSCCCEECCSBSCCCCCC----------------------CCCSSSC-
T ss_pred ECCCCcCCeeC-----------HHHcccccCCccceEECCCCcccccccc----------------------chhhcCC-
Confidence 66654332111 0111111 4555555555543321000 0000000
Q ss_pred cccccCCCcccCccCcccceeecccCcccccCCCCCCCCccEEEEccccCcccccccccccceeecccccceeeeccccc
Q 048507 827 EDWIPHGFSQGVEGFPKLRELQILSCSKLQGTFPEHLPALEKLVIKGCEELSVLVSSLPALCKLQIGGCKKVVWRSATDH 906 (1448)
Q Consensus 827 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 906 (1448)
......|+.|++++| .+.+..|..+... -....+..|.+..+..... .
T Consensus 200 -----------~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~---------------l~~~~l~~L~l~~~~~~~~----~- 247 (844)
T 3j0a_A 200 -----------PFRNMVLEILDVSGN-GWTVDITGNFSNA---------------ISKSQAFSLILAHHIMGAG----F- 247 (844)
T ss_dssp -----------TTTTCCBSEEBCSSC-CSSTTTTSGGGGT---------------SCSCCBSEEECCSSCCBCS----S-
T ss_pred -----------ccccCceeEEecCCC-cCchhHHHHHHhh---------------cCcccccceeccccccccc----c-
Confidence 001123666777666 3333333221100 0012233333332111000 0
Q ss_pred CCCccccccccCCccccccCccccccchhhhhhccccccceeeccCCccccc--cCCcceEeecCCCCccccchhhhhHH
Q 048507 907 LGSQNSVVCRDTSNQVFLAGPLKLRLPKLEELILSTKEQTYIWKSHDGLLQD--ICSLKRLTIDSCPTLQSLVAEEEKDQ 984 (1448)
Q Consensus 907 ~~~l~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~i~~~~~~~~~~--l~~L~~L~l~~~~~l~~l~~~~~~~~ 984 (1448)
...++ .......+.. .++|+.|++++|. +..++...
T Consensus 248 ------------------------~~~~l-------------~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~~~---- 285 (844)
T 3j0a_A 248 ------------------------GFHNI-------------KDPDQNTFAGLARSSVRHLDLSHGF-VFSLNSRV---- 285 (844)
T ss_dssp ------------------------SCSSS-------------TTGGGTTTTTTTTSCCCEEECTTCC-CCEECSCC----
T ss_pred ------------------------ccccc-------------CCCChhhhhccccCCccEEECCCCc-ccccChhh----
Confidence 00000 0000011111 2456666665543 22222211
Q ss_pred HhhhhhhccccceEEecccCCccccccccCccCCcceeeeccCCCCcccC-CCCCccccceeEecccCCCCccchhhccC
Q 048507 985 QQQLCELSCRLEYLELNECKGLVKLPQSSLSLSSLREIEICGCSSLVSFP-EVALPAKLRIISINSCDALKWLPEAWMCD 1063 (1448)
Q Consensus 985 ~~~l~~~~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~~~-~~~~~~~L~~L~l~~~~~l~~lp~~~~~~ 1063 (1448)
...+++|+.|+|++|......|..+..+++|++|++++|......+ .+..+++|+.|++++|.. ..++.... .
T Consensus 286 ----~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~-~ 359 (844)
T 3j0a_A 286 ----FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI-AIIQDQTF-K 359 (844)
T ss_dssp ----SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCC-CCCCSSCS-C
T ss_pred ----hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCC-CccChhhh-c
Confidence 1123566666666655555555556666666666666653322212 233456666666666543 33322211 2
Q ss_pred CCCCcceEEEecCCCcccccCCcCCcCccEEEEecCCCCcccccccccccccCCccCCCCccceeeccCCCCcccccccC
Q 048507 1064 FNSSLEILSIECCRSLTYIAGVQLPPSLKRLYIEFCDNIRTLTVEEGVQRSSSSRRCTSSLLEELDINSCPSLTCIFSKN 1143 (1448)
Q Consensus 1064 ~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~ 1143 (1448)
.+++|+.|++++|. ++.++ .+++|+.|++++|.- ..++
T Consensus 360 ~l~~L~~L~Ls~N~-l~~i~---~~~~L~~L~l~~N~l-~~l~------------------------------------- 397 (844)
T 3j0a_A 360 FLEKLQTLDLRDNA-LTTIH---FIPSIPDIFLSGNKL-VTLP------------------------------------- 397 (844)
T ss_dssp SCCCCCEEEEETCC-SCCCS---SCCSCSEEEEESCCC-CCCC-------------------------------------
T ss_pred CCCCCCEEECCCCC-CCccc---CCCCcchhccCCCCc-cccc-------------------------------------
Confidence 45666666666653 22222 244555555555431 1110
Q ss_pred CCchhhhccccCCCCccccEEEEecCCCchh-hhhhcccCCccceeeecccccccccCc-ccCCCCCccEEEcccCCCc-
Q 048507 1144 ELPATLESLEVGNLPESLKSLRVWDCPKLES-IAERLDNNTSLEIIRIAYCENLKILPS-GLHNLRQLQEIEIRRCGNL- 1220 (1448)
Q Consensus 1144 ~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~Ls~n~~~~~~p~-~l~~l~~L~~L~L~~~~~l- 1220 (1448)
....+++.|++++|...+. .+..+.++++|++|++++|.+.+..+. .+..+++|+.|++++|...
T Consensus 398 ------------~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 465 (844)
T 3j0a_A 398 ------------KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465 (844)
T ss_dssp ------------CCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSS
T ss_pred ------------ccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccc
Confidence 0113667777777665442 233456777888888888776654332 3455778888888876543
Q ss_pred ----cccCCCCCCCCCccEEEecCccCccccccccCCCCcccceec-ccCCCccccCCCCCccceeeecccccccccccc
Q 048507 1221 ----VSFPKGGLPGAKLTRLEISDCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIE 1295 (1448)
Q Consensus 1221 ----~~lp~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 1295 (1448)
+..+..+..+++|++|+|++|.+.+..|..+.++++|+.|++ +|.+..++...++++|+.|++++|... ..
T Consensus 466 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~----~~ 541 (844)
T 3j0a_A 466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLL----AP 541 (844)
T ss_dssp SCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCC----CC
T ss_pred ccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCC----CC
Confidence 222334556778888888888777666677788888888888 677777777777778888888887532 33
Q ss_pred cCCccccCCCccEEEEecC
Q 048507 1296 RGRGFHRFSSLQHLTIEGC 1314 (1448)
Q Consensus 1296 ~~~~~~~l~~L~~L~l~~c 1314 (1448)
.+.. +.+|+.|++++|
T Consensus 542 ~~~~---~~~L~~l~l~~N 557 (844)
T 3j0a_A 542 NPDV---FVSLSVLDITHN 557 (844)
T ss_dssp CSCC---CSSCCEEEEEEE
T ss_pred ChhH---hCCcCEEEecCC
Confidence 3333 346778888774
No 13
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=5.9e-32 Score=340.89 Aligned_cols=305 Identities=22% Similarity=0.327 Sum_probs=235.5
Q ss_pred cCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccc-cccc-ceEEEEEeCCccCHHHHHH
Q 048507 187 EAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRV-QDHF-DLKAWTCVSDDFDVKGLTK 264 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~~ 264 (1448)
+..||||+.+++++.++|... .+..++|+|+||||+||||||++++++.+. ..+| +.++|++++.. +...+..
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL----KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS----TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcc----cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 456999999999999999653 235789999999999999999999987655 7888 58999999765 3333333
Q ss_pred H---HHHhccCC----CCCCCCHHHHHHHHHHHhCC--ccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchh
Q 048507 265 T---ILRSVTKQ----TIDDSDLNLLQEELKKKLSQ--KKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQE 335 (1448)
Q Consensus 265 ~---i~~~l~~~----~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 335 (1448)
. ++..++.. .....+.+.+...++..+.+ +++||||||||+. ..+.. + .+|++||||||+..
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~~----l---~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLKA----F---DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHHT----T---CSSCEEEEEESCGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHHH----h---cCCCeEEEECCCcH
Confidence 3 33444421 12345677778888888765 7899999999874 33322 2 46899999999998
Q ss_pred hhhccCCcceEeC---CCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCchHHHHHHHhhhccCCChhHHHHHHhcc
Q 048507 336 VADIMGTASAYQL---KKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGLPLAAQTLGGLLRGKCDRSDWEDLLSCK 412 (1448)
Q Consensus 336 v~~~~~~~~~~~l---~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w~~~~~~~ 412 (1448)
++..+. ...+++ ++|+.+||+++|...++.......+.+.+|+++|+|+||||+++|+.++... ..|...+...
T Consensus 269 ~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l 345 (591)
T 1z6t_A 269 VTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQL 345 (591)
T ss_dssp GGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHH
T ss_pred HHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHH
Confidence 876543 234444 5899999999999988764444567889999999999999999999998763 4687766543
Q ss_pred ccCC--------CCcccchhhHHHHhhhcCChhhHHHHhhhcccCCCceeCHHHHHHHHHHcCCCcCCCCCCChHHHHHH
Q 048507 413 IWNL--------PEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKESGNPNEDLGRK 484 (1448)
Q Consensus 413 ~~~~--------~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~ 484 (1448)
.... ......+..++..||+.||++.|.||+++|+||+++.|+.+.+..+|.++ .+.+..
T Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~ 413 (591)
T 1z6t_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVED 413 (591)
T ss_dssp HSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHH
T ss_pred HHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHH
Confidence 2111 11224688999999999999999999999999999999999999988432 345788
Q ss_pred HHHHHHhCCcccccC-CCcceEEEeHHHHHHHHHHhc
Q 048507 485 FFQELRGRSFFQQSS-NNISRFVMHDLINDLARWAAG 520 (1448)
Q Consensus 485 ~~~~L~~~sll~~~~-~~~~~~~mH~lv~~~a~~~~~ 520 (1448)
++++|+++||++... +...+|.||+++|++++....
T Consensus 414 ~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 414 ILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 999999999998643 344589999999999997743
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=2.5e-30 Score=339.03 Aligned_cols=508 Identities=16% Similarity=0.154 Sum_probs=299.3
Q ss_pred cccccEeeccccccCCCCCCchhhhhhhcccCceeEEEeCCCC-cccc-CccccCCccceEEeccCcccccc-Chhhhcc
Q 048507 564 IQHLRTFLPVMLSNSLHGYLAPSILTELFKLQRLRVFSLRGYR-IDEL-PDSIGDLRYFRYLNLSGTEIRTL-PESVNKL 640 (1448)
Q Consensus 564 ~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-i~~l-p~~i~~l~~L~~L~Ls~n~i~~l-p~~i~~L 640 (1448)
.++++.|.... +.+....+..+.++++|++|+|++|. +..+ |..|+++++|++|+|++|.|..+ |..|+++
T Consensus 23 p~~l~~LdLs~------N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l 96 (844)
T 3j0a_A 23 LNTTERLLLSF------NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96 (844)
T ss_dssp CTTCCEEEEES------CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred CCCcCEEECCC------CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence 45677774321 12222235566699999999999995 5677 78899999999999999999966 7899999
Q ss_pred ccccEEeccCCchhhccccc--ccccCCCCeeeecCCCCccccc--cccCcccccccccceecccCCCCCcccccccccc
Q 048507 641 YNLHSLLLEDCDRLKKLCAD--MGNLAKLHHLKNSNTKSLEEMP--VGIGRLTSLQTLCNFVVGQGSGSGLRELKLLTHL 716 (1448)
Q Consensus 641 ~~L~~L~L~~n~~~~~lp~~--i~~L~~L~~L~l~~~~~l~~~p--~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L 716 (1448)
++|++|+|++|...+.+|.. |+++++|++|++++|. +..++ ..++++++|++|+...+
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N----------------- 158 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSN----------------- 158 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESS-----------------
T ss_pred cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCC-----------------
Confidence 99999999998766656665 8999999999999999 55543 45899999999843211
Q ss_pred CceeEEeecCCccchhhhHHhhcCCC--CCCCeEEEEeecCCCCCCChhhhhHHhhhccCCCCC------CcceeEEece
Q 048507 717 HGTLKISKLENVKCVGDAMEAQMDGK--KNLKELSLNWTCSTDGSSSREVETEMGVLDMLKPHT------NLEQFCIKGY 788 (1448)
Q Consensus 717 ~~~l~~~~l~~~~~~~~~~~~~l~~~--~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~------~L~~L~l~~~ 788 (1448)
.+... .+..+..+ ++|+.|+++.|...... ...+..++ .|+.|++++|
T Consensus 159 -------~i~~~------~~~~l~~l~~~~L~~L~L~~n~l~~~~-----------~~~~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 159 -------QIFLV------CEHELEPLQGKTLSFFSLAANSLYSRV-----------SVDWGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp -------CCCCC------CSGGGHHHHHCSSCCCEECCSBSCCCC-----------CCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred -------cCCee------CHHHcccccCCccceEECCCCcccccc-----------ccchhhcCCccccCceeEEecCCC
Confidence 11111 01112222 68999999886443211 11122222 3667766666
Q ss_pred ecCCCCCceEeCccccCCCCCCCCCccceeeccccccccccccCCCcccCccCcccceeecccCcccccCCCCCCCCccE
Q 048507 789 GVSGMSRVKRLGSEFYGNDSPIPFPCLETLLFENMQEWEDWIPHGFSQGVEGFPKLRELQILSCSKLQGTFPEHLPALEK 868 (1448)
Q Consensus 789 ~i~~l~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~ 868 (1448)
.+.... ...+.. .-..+.++.|.+..+. +...+. ..++..
T Consensus 215 ~l~~~~--------------------------------~~~~~~-----~l~~~~l~~L~l~~~~-~~~~~~--~~~l~~ 254 (844)
T 3j0a_A 215 GWTVDI--------------------------------TGNFSN-----AISKSQAFSLILAHHI-MGAGFG--FHNIKD 254 (844)
T ss_dssp CSSTTT--------------------------------TSGGGG-----TSCSCCBSEEECCSSC-CBCSSS--CSSSTT
T ss_pred cCchhH--------------------------------HHHHHh-----hcCcccccceeccccc-cccccc--ccccCC
Confidence 532210 000000 0122456666665331 110000 000000
Q ss_pred EEEccccCccccccc--ccccceeecccccceeeecccccCCCccccccccCCccccccCccccccchhhhhhccccccc
Q 048507 869 LVIKGCEELSVLVSS--LPALCKLQIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKLRLPKLEELILSTKEQT 946 (1448)
Q Consensus 869 L~l~~~~~l~~~~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 946 (1448)
. ....+.. .++|+.|++++|....
T Consensus 255 ~-------~~~~f~~l~~~~L~~L~Ls~n~l~~----------------------------------------------- 280 (844)
T 3j0a_A 255 P-------DQNTFAGLARSSVRHLDLSHGFVFS----------------------------------------------- 280 (844)
T ss_dssp G-------GGTTTTTTTTSCCCEEECTTCCCCE-----------------------------------------------
T ss_pred C-------ChhhhhccccCCccEEECCCCcccc-----------------------------------------------
Confidence 0 0001111 2345555555443222
Q ss_pred eeeccCCccccccCCcceEeecCCCCccccchhhhhHHHhhhhhhccccceEEecccCCccccccccCccCCcceeeecc
Q 048507 947 YIWKSHDGLLQDICSLKRLTIDSCPTLQSLVAEEEKDQQQQLCELSCRLEYLELNECKGLVKLPQSSLSLSSLREIEICG 1026 (1448)
Q Consensus 947 ~i~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~ 1026 (1448)
..+..+..+++|+.|++++|. ++.+++..+ ..+++|++|++++|......|..+..+++|++|++++
T Consensus 281 ----~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~--------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 347 (844)
T 3j0a_A 281 ----LNSRVFETLKDLKVLNLAYNK-INKIADEAF--------YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347 (844)
T ss_dssp ----ECSCCSSSCCCCCEEEEESCC-CCEECTTTT--------TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCS
T ss_pred ----cChhhhhcCCCCCEEECCCCc-CCCCChHHh--------cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCC
Confidence 122334455666666666543 333322211 1235667777776655555566667777777777777
Q ss_pred CCCCcccCC--CCCccccceeEecccCCCCccchhhccCCCCCcceEEEecCCCcccccCCcCCcCccEEEEecCCCCcc
Q 048507 1027 CSSLVSFPE--VALPAKLRIISINSCDALKWLPEAWMCDFNSSLEILSIECCRSLTYIAGVQLPPSLKRLYIEFCDNIRT 1104 (1448)
Q Consensus 1027 c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~ 1104 (1448)
| .+..++. +..+++|+.|++++|.. ..++ .+++|+.|++++|. ++.++. ...+++.|+++++. +..
T Consensus 348 N-~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~------~~~~L~~L~l~~N~-l~~l~~--~~~~l~~L~ls~N~-l~~ 415 (844)
T 3j0a_A 348 N-HIAIIQDQTFKFLEKLQTLDLRDNAL-TTIH------FIPSIPDIFLSGNK-LVTLPK--INLTANLIHLSENR-LEN 415 (844)
T ss_dssp C-CCCCCCSSCSCSCCCCCEEEEETCCS-CCCS------SCCSCSEEEEESCC-CCCCCC--CCTTCCEEECCSCC-CCS
T ss_pred C-CCCccChhhhcCCCCCCEEECCCCCC-Cccc------CCCCcchhccCCCC-cccccc--cccccceeecccCc-ccc
Confidence 6 3444443 34466777777777653 2333 25677777777764 334432 23456777776653 222
Q ss_pred cccccccccccCCccCCCCccceeeccCCCCcccccccCCCchhhhccccCCCCccccEEEEecCCCc-----hhhhhhc
Q 048507 1105 LTVEEGVQRSSSSRRCTSSLLEELDINSCPSLTCIFSKNELPATLESLEVGNLPESLKSLRVWDCPKL-----ESIAERL 1179 (1448)
Q Consensus 1105 l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~-----~~~~~~~ 1179 (1448)
++... ....+++|+.|+++++.--.. . ... ... ..++|+.|++++|... +..+..+
T Consensus 416 l~~~~--------~~~~l~~L~~L~Ls~N~l~~~-~-~~~--------~~~-~~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 476 (844)
T 3j0a_A 416 LDILY--------FLLRVPHLQILILNQNRFSSC-S-GDQ--------TPS-ENPSLEQLFLGENMLQLAWETELCWDVF 476 (844)
T ss_dssp STTHH--------HHTTCTTCCEEEEESCCCCCC-C-SSS--------SSC-SCTTCCBCEEESCCCSSSCCSCCCSSCS
T ss_pred Cchhh--------hhhcCCccceeeCCCCccccc-c-ccc--------ccc-cCCccccccCCCCccccccccccchhhh
Confidence 21100 012345677777776542110 0 000 011 1248888999888765 3344568
Q ss_pred ccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEecCccCccccccccCCCCcccc
Q 048507 1180 DNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEISDCNRLEALPKGLHNLKSLQE 1259 (1448)
Q Consensus 1180 ~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~ 1259 (1448)
.++++|++|+|++|.+.+..|..+..+++|+.|+|++| .++.+|..... ++|+.|+|++|.+.+..|..+ .+|+.
T Consensus 477 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~---~~L~~ 551 (844)
T 3j0a_A 477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLP-ANLEILDISRNQLLAPNPDVF---VSLSV 551 (844)
T ss_dssp SCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCC---SSCCE
T ss_pred cCcccccEEECCCCcccccChhHccchhhhheeECCCC-CCCccChhhhh-ccccEEECCCCcCCCCChhHh---CCcCE
Confidence 88888999999988888877788888889999999886 45556665554 788888888888877777554 35666
Q ss_pred eec
Q 048507 1260 LRI 1262 (1448)
Q Consensus 1260 L~l 1262 (1448)
|++
T Consensus 552 l~l 554 (844)
T 3j0a_A 552 LDI 554 (844)
T ss_dssp EEE
T ss_pred EEe
Confidence 666
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=4.3e-30 Score=324.53 Aligned_cols=99 Identities=23% Similarity=0.263 Sum_probs=72.8
Q ss_pred CceeEEEeCCCCccccC-ccccCCccceEEeccCccccccC-hhhhccccccEEeccCCchhhcccccccccCCCCeeee
Q 048507 595 QRLRVFSLRGYRIDELP-DSIGDLRYFRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 672 (1448)
Q Consensus 595 ~~L~~L~L~~n~i~~lp-~~i~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~~L~~L~l 672 (1448)
+.+++|+|++|.++.++ ..|.++++|++|+|++|.+..+| ..|.++++|++|+|++|......|..|+.+++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 46788888888887774 46788888888888888887665 56788888888888887544444466788888888888
Q ss_pred cCCCCcccccc-ccCcccccccc
Q 048507 673 SNTKSLEEMPV-GIGRLTSLQTL 694 (1448)
Q Consensus 673 ~~~~~l~~~p~-~i~~L~~L~~L 694 (1448)
++|. +..+|. .++++++|++|
T Consensus 108 ~~n~-l~~l~~~~~~~l~~L~~L 129 (570)
T 2z63_A 108 VETN-LASLENFPIGHLKTLKEL 129 (570)
T ss_dssp TTSC-CCCSTTCSCTTCTTCCEE
T ss_pred cccc-cccCCCccccccccccEE
Confidence 8887 666654 36666666666
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1e-29 Score=319.14 Aligned_cols=191 Identities=17% Similarity=0.119 Sum_probs=133.5
Q ss_pred ccccEEEEecCCCchhhhhhc-ccCCccceeeecccccccccC---cccCCCCCccEEEcccCCCccccC---CCCCCCC
Q 048507 1159 ESLKSLRVWDCPKLESIAERL-DNNTSLEIIRIAYCENLKILP---SGLHNLRQLQEIEIRRCGNLVSFP---KGGLPGA 1231 (1448)
Q Consensus 1159 ~~L~~L~L~~~~~~~~~~~~~-~~l~~L~~L~Ls~n~~~~~~p---~~l~~l~~L~~L~L~~~~~l~~lp---~~~~~~~ 1231 (1448)
++|+.|++++|.. +.+|..+ ..+++|++|++++|.+.+.+| ..+..+++|+.|++++|+. +.++ ..+..++
T Consensus 310 ~~L~~L~l~~n~l-~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 310 EKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL-RSMQKTGEILLTLK 387 (549)
T ss_dssp TTCCEEEEESSCC-CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCC-CCHHHHHHHGGGCT
T ss_pred ccceEEEeccCcc-ccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcc-cccccchhhhhcCC
Confidence 3788888888764 4566544 578888888888888777654 3467788888888888653 3333 2355678
Q ss_pred CccEEEecCccCccccccccCCCCcccceec-ccCCCccccCCCCCccceeeecccccccccccccCCccccCCCccEEE
Q 048507 1232 KLTRLEISDCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLT 1310 (1448)
Q Consensus 1232 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ 1310 (1448)
+|++|++++|.. ..+|..+..+++|++|++ +|.+..++. ..+++|+.|++++|... . ....+++|++|+
T Consensus 388 ~L~~L~Ls~N~l-~~lp~~~~~~~~L~~L~Ls~N~l~~l~~-~~~~~L~~L~Ls~N~l~----~----~~~~l~~L~~L~ 457 (549)
T 2z81_A 388 NLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIRVVKT-CIPQTLEVLDVSNNNLD----S----FSLFLPRLQELY 457 (549)
T ss_dssp TCCEEECTTCCC-CCCCSCCCCCTTCCEEECTTSCCSCCCT-TSCTTCSEEECCSSCCS----C----CCCCCTTCCEEE
T ss_pred CCCEEECCCCCC-ccCChhhcccccccEEECCCCCcccccc-hhcCCceEEECCCCChh----h----hcccCChhcEEE
Confidence 888888888764 467888888888888888 566665543 34568888888888532 1 224678888888
Q ss_pred EecCCCcCccccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCCC
Q 048507 1311 IEGCDDDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCP 1371 (1448)
Q Consensus 1311 l~~c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~ 1371 (1448)
+++| .+..+|.. ..+++|+.|++++|...+..|..+..+++|+.|++++|+
T Consensus 458 Ls~N--~l~~ip~~--------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 458 ISRN--KLKTLPDA--------SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCSS--CCSSCCCG--------GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred CCCC--ccCcCCCc--------ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 8885 44566642 346788888888864444444557778888888888876
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=8.1e-30 Score=320.04 Aligned_cols=472 Identities=15% Similarity=0.114 Sum_probs=250.5
Q ss_pred hhhhhhcccCceeEEEeCCCCcccc-CccccCCccceEEeccCccccccC-hhhhccccccEEeccCCchhhcccccccc
Q 048507 586 SILTELFKLQRLRVFSLRGYRIDEL-PDSIGDLRYFRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCADMGN 663 (1448)
Q Consensus 586 ~~~~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~lp~~i~~ 663 (1448)
.+|..++ +.|++|+|++|.++.+ |..|+++++|++|+|++|.+..+| ..|+++++|++|+|++|...+..|..|++
T Consensus 19 ~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 96 (549)
T 2z81_A 19 SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96 (549)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhcc
Confidence 3444443 6889999999998877 567889999999999999988665 67889999999999987554444555889
Q ss_pred cCCCCeeeecCCCCcc--ccccccCcccccccccceecccCCCCCccccccccccCceeEEeecCCccchhhhHHhhcCC
Q 048507 664 LAKLHHLKNSNTKSLE--EMPVGIGRLTSLQTLCNFVVGQGSGSGLRELKLLTHLHGTLKISKLENVKCVGDAMEAQMDG 741 (1448)
Q Consensus 664 L~~L~~L~l~~~~~l~--~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~ 741 (1448)
+++|++|++++|. +. .+|..++++++|++|+...+.... ......+..
T Consensus 97 l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~-----------------------------~~~~~~~~~ 146 (549)
T 2z81_A 97 LSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFS-----------------------------EIRRIDFAG 146 (549)
T ss_dssp CTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCC-----------------------------EECTTTTTT
T ss_pred CCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCcccc-----------------------------ccCHhhhhc
Confidence 9999999999988 55 345668888888887443221100 001112444
Q ss_pred CCCCCeEEEEeecCCCCCCChhhhhHHhhhccCCCCCCcceeEEeceecCCCCCceEeCccccCCCCCCCCCccceeecc
Q 048507 742 KKNLKELSLNWTCSTDGSSSREVETEMGVLDMLKPHTNLEQFCIKGYGVSGMSRVKRLGSEFYGNDSPIPFPCLETLLFE 821 (1448)
Q Consensus 742 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~l~~l~~l~~~~~~~~~~~~~~~L~~L~l~ 821 (1448)
+++|++|++++|.... .....+..+++|+.|+++++.+..++
T Consensus 147 l~~L~~L~L~~n~l~~-----------~~~~~l~~l~~L~~L~l~~n~~~~~~--------------------------- 188 (549)
T 2z81_A 147 LTSLNELEIKALSLRN-----------YQSQSLKSIRDIHHLTLHLSESAFLL--------------------------- 188 (549)
T ss_dssp CCEEEEEEEEETTCCE-----------ECTTTTTTCSEEEEEEEECSBSTTHH---------------------------
T ss_pred ccccCeeeccCCcccc-----------cChhhhhccccCceEecccCcccccc---------------------------
Confidence 5556666665532211 11223444455555555544422111
Q ss_pred ccccccccccCCCcccCccCcccceeecccCcccccC------CCCCCCCccEEEEccccCcc-------cccccccccc
Q 048507 822 NMQEWEDWIPHGFSQGVEGFPKLRELQILSCSKLQGT------FPEHLPALEKLVIKGCEELS-------VLVSSLPALC 888 (1448)
Q Consensus 822 ~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~------~p~~l~~L~~L~l~~~~~l~-------~~~~~l~~L~ 888 (1448)
.+. ...+++|+.|++++| .+++. +...+++|+.|++++|.... ..+..+++|+
T Consensus 189 ------~~~-------~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~ 254 (549)
T 2z81_A 189 ------EIF-------ADILSSVRYLELRDT-NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254 (549)
T ss_dssp ------HHH-------HHSTTTBSEEEEESC-BCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCC
T ss_pred ------hhh-------HhhcccccEEEccCC-ccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccc
Confidence 000 122444555555544 22211 11234455555555543211 1223455666
Q ss_pred eeecccccceeeecccccCCCccccccccCCccccccCccccccchhhhhhccccccceeeccCCccccccCCcceEeec
Q 048507 889 KLQIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKLRLPKLEELILSTKEQTYIWKSHDGLLQDICSLKRLTID 968 (1448)
Q Consensus 889 ~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~i~~~~~~~~~~l~~L~~L~l~ 968 (1448)
.+.+.+|......... ......+..+++|+.|.+.
T Consensus 255 ~l~l~~~~~~~~~~~~---------------------------------------------~~~~~~~~~l~~L~~L~l~ 289 (549)
T 2z81_A 255 EVEFDDCTLNGLGDFN---------------------------------------------PSESDVVSELGKVETVTIR 289 (549)
T ss_dssp EEEEESCEEECCSCCC---------------------------------------------CCTTTCCCCCTTCCEEEEE
T ss_pred cccccccccccccccc---------------------------------------------ccchhhhhhhccccccccc
Confidence 6666665433211000 0000112334555555555
Q ss_pred CCCCccccchhhhhHHHhhhhhhccccceEEecccCCcccccccc-CccCCcceeeeccCCCCcccC----CCCCccccc
Q 048507 969 SCPTLQSLVAEEEKDQQQQLCELSCRLEYLELNECKGLVKLPQSS-LSLSSLREIEICGCSSLVSFP----EVALPAKLR 1043 (1448)
Q Consensus 969 ~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~lp~~~-~~l~~L~~L~L~~c~~l~~~~----~~~~~~~L~ 1043 (1448)
++..- .... ...+.......++|+.|++++|. ++.+|..+ ..+++|++|++++|.....+| ....+++|+
T Consensus 290 ~~~i~-~~~~---~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~ 364 (549)
T 2z81_A 290 RLHIP-QFYL---FYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364 (549)
T ss_dssp SCBCS-CGGG---SCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCC
T ss_pred ccccc-hhhh---cccchhhhhhcccceEEEeccCc-cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCc
Confidence 54211 1000 00001111234567777777754 45666554 357777777777765443332 134456677
Q ss_pred eeEecccCCCCccch-hhccCCCCCcceEEEecCCCcccccC-CcCCcCccEEEEecCCCCcccccccccccccCCccCC
Q 048507 1044 IISINSCDALKWLPE-AWMCDFNSSLEILSIECCRSLTYIAG-VQLPPSLKRLYIEFCDNIRTLTVEEGVQRSSSSRRCT 1121 (1448)
Q Consensus 1044 ~L~l~~~~~l~~lp~-~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 1121 (1448)
+|++++|... .++. ......+++|++|++++|. ++.++. ...+++
T Consensus 365 ~L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~------------------------------- 411 (549)
T 2z81_A 365 TLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEK------------------------------- 411 (549)
T ss_dssp EEECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTT-------------------------------
T ss_pred EEEccCCccc-ccccchhhhhcCCCCCEEECCCCC-CccCChhhccccc-------------------------------
Confidence 7777766533 2221 1111246666666666653 222221 122233
Q ss_pred CCccceeeccCCCCcccccccCCCchhhhccccCCCCccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCc
Q 048507 1122 SSLLEELDINSCPSLTCIFSKNELPATLESLEVGNLPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPS 1201 (1448)
Q Consensus 1122 ~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~ 1201 (1448)
|++|++++|. ++. +| ..+|++|++|++++|...+. ...+++|++|++++|.+. .+|.
T Consensus 412 ---L~~L~Ls~N~-l~~------l~--------~~~~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~ 468 (549)
T 2z81_A 412 ---MRFLNLSSTG-IRV------VK--------TCIPQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD 468 (549)
T ss_dssp ---CCEEECTTSC-CSC------CC--------TTSCTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC
T ss_pred ---ccEEECCCCC-ccc------cc--------chhcCCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC
Confidence 4444444332 110 00 11224677777777765443 246677777777776654 5554
Q ss_pred ccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEecCccCccccc
Q 048507 1202 GLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEISDCNRLEALP 1248 (1448)
Q Consensus 1202 ~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~p 1248 (1448)
...+++|+.|+|++|+..+..|..+..+++|+.|++++|+..+..|
T Consensus 469 -~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 469 -ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp -GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred -cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 3456777777777765444334445566777777777777655554
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=8.7e-30 Score=321.76 Aligned_cols=103 Identities=24% Similarity=0.409 Sum_probs=71.9
Q ss_pred hhcccCceeEEEeCCCCccccC-ccccCCccceEEeccCccccccC-hhhhccccccEEeccCCchhhcccc-cccccCC
Q 048507 590 ELFKLQRLRVFSLRGYRIDELP-DSIGDLRYFRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCA-DMGNLAK 666 (1448)
Q Consensus 590 ~~~~l~~L~~L~L~~n~i~~lp-~~i~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~lp~-~i~~L~~ 666 (1448)
.+.++++|++|+|++|.++.++ ..|+++++|++|+|++|.++.+| ..|+++++|++|++++| .+..+|. .++++++
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~ 125 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKT 125 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTT
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc-ccccCCCcccccccc
Confidence 4457777777777777777763 55777777777777777777665 56777777777777776 3444443 4777777
Q ss_pred CCeeeecCCCCccc--cccccCcccccccc
Q 048507 667 LHHLKNSNTKSLEE--MPVGIGRLTSLQTL 694 (1448)
Q Consensus 667 L~~L~l~~~~~l~~--~p~~i~~L~~L~~L 694 (1448)
|++|++++|. +.. +|..++++++|++|
T Consensus 126 L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L 154 (570)
T 2z63_A 126 LKELNVAHNL-IQSFKLPEYFSNLTNLEHL 154 (570)
T ss_dssp CCEEECCSSC-CCCCCCCGGGGGCTTCCEE
T ss_pred ccEEecCCCc-cceecChhhhcccCCCCEE
Confidence 7777777776 443 56667777777766
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=9.5e-29 Score=307.58 Aligned_cols=441 Identities=16% Similarity=0.105 Sum_probs=245.9
Q ss_pred eEEEeCCCCccccCccccCCccceEEeccCccccccC-hhhhccccccEEeccCCchhhcccccccccCCCCeeeecCCC
Q 048507 598 RVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTK 676 (1448)
Q Consensus 598 ~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~~L~~L~l~~~~ 676 (1448)
++||+++|.++.+|..+. ++|++|+|++|.+..+| ..|.++++|++|+|++|...+..|..|+++++|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 578888888888887776 78888888888888776 678888888888888876555557788888888888888888
Q ss_pred CccccccccCcccccccccceecccCCCCCccccccccccCceeEEeecCCccchhhhHHhhcCCCCCCCeEEEEeecCC
Q 048507 677 SLEEMPVGIGRLTSLQTLCNFVVGQGSGSGLRELKLLTHLHGTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCST 756 (1448)
Q Consensus 677 ~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 756 (1448)
++.+|.. .+++|++|+...+. +..+ ..+..+..+++|+.|++++|...
T Consensus 81 -l~~lp~~--~l~~L~~L~L~~N~------------------------l~~~-----~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 81 -LVKISCH--PTVNLKHLDLSFNA------------------------FDAL-----PICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp -CCEEECC--CCCCCSEEECCSSC------------------------CSSC-----CCCGGGGGCTTCCEEEEEESSCC
T ss_pred -eeecCcc--ccCCccEEeccCCc------------------------cccc-----cchhhhccCCcceEEEecCcccc
Confidence 6778766 67777777332111 0000 01223455566677777664221
Q ss_pred CCCCChhhhhHHhhhccCCCCCCc--ceeEEeceecCCCCCceEeCccccCCCCCCCCCccceeeccccccccccccCCC
Q 048507 757 DGSSSREVETEMGVLDMLKPHTNL--EQFCIKGYGVSGMSRVKRLGSEFYGNDSPIPFPCLETLLFENMQEWEDWIPHGF 834 (1448)
Q Consensus 757 ~~~~~~~~~~~~~~l~~l~~~~~L--~~L~l~~~~i~~l~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 834 (1448)
. ..+..+++| +.|++++|.+.+... .+..+
T Consensus 129 ~--------------~~~~~l~~L~L~~L~l~~n~l~~~~~------------~~~~l---------------------- 160 (520)
T 2z7x_B 129 K--------------SSVLPIAHLNISKVLLVLGETYGEKE------------DPEGL---------------------- 160 (520)
T ss_dssp G--------------GGGGGGTTSCEEEEEEEECTTTTSSC------------CTTTT----------------------
T ss_pred h--------------hhccccccceeeEEEeeccccccccc------------ccccc----------------------
Confidence 0 011222333 555555554310000 00000
Q ss_pred cccCccCc-ccceeecccCcccccCCCCCCCCccEEEEccccCcccccccccccceeecccccceeeecccccCCCcccc
Q 048507 835 SQGVEGFP-KLRELQILSCSKLQGTFPEHLPALEKLVIKGCEELSVLVSSLPALCKLQIGGCKKVVWRSATDHLGSQNSV 913 (1448)
Q Consensus 835 ~~~~~~~~-~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l 913 (1448)
..+. ..-.+++.++... +.++. ..+..+++|+.|++++|....
T Consensus 161 ----~~l~~~~l~l~l~~n~~~-~~~~~-----------------~~~~~l~~L~~L~l~~n~~~~-------------- 204 (520)
T 2z7x_B 161 ----QDFNTESLHIVFPTNKEF-HFILD-----------------VSVKTVANLELSNIKCVLEDN-------------- 204 (520)
T ss_dssp ----TTCCEEEEEEECCSSSCC-CCCCC-----------------CCCTTCSEEEECCEEECCSTT--------------
T ss_pred ----cccccceEEEEeccCcch-hhhhh-----------------hhhhcccceeecccccccccc--------------
Confidence 0011 1112334444211 12221 123345556666665543100
Q ss_pred ccccCCccccccCccccccchhhhhhccccccceeeccCCccccccCCcceEeecCCCCccccchhhhhHHHhhhhhhcc
Q 048507 914 VCRDTSNQVFLAGPLKLRLPKLEELILSTKEQTYIWKSHDGLLQDICSLKRLTIDSCPTLQSLVAEEEKDQQQQLCELSC 993 (1448)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~i~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~ 993 (1448)
.+..+ ....+ .+..+++|+.|++++|..-..... ..... ...+
T Consensus 205 -----------------~~~~~-------------~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~----~~~~~--~~~~ 247 (520)
T 2z7x_B 205 -----------------KCSYF-------------LSILA-KLQTNPKLSNLTLNNIETTWNSFI----RILQL--VWHT 247 (520)
T ss_dssp -----------------TTHHH-------------HHHHH-GGGGCTTCCEEEEEEEEEEHHHHH----HHHHH--HHTS
T ss_pred -----------------cccee-------------ecchh-hhccccchhhccccccccCHHHHH----HHHHH--hhhC
Confidence 00000 00001 245567788888876532211111 11110 1235
Q ss_pred ccceEEecccCCcccccccc-----CccCCcceeeeccCCCCcccCCCC--Cc---cccceeEecccCCCCccchhhccC
Q 048507 994 RLEYLELNECKGLVKLPQSS-----LSLSSLREIEICGCSSLVSFPEVA--LP---AKLRIISINSCDALKWLPEAWMCD 1063 (1448)
Q Consensus 994 ~L~~L~L~~~~~l~~lp~~~-----~~l~~L~~L~L~~c~~l~~~~~~~--~~---~~L~~L~l~~~~~l~~lp~~~~~~ 1063 (1448)
+|++|++++|...+.+|..+ ..+++|+.+++++|.. .+|... .. .+|+.|++++|....
T Consensus 248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~--------- 316 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVH--------- 316 (520)
T ss_dssp SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCC---------
T ss_pred cccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccc---------
Confidence 78888888877766777766 6677777777776543 333110 00 234444444433211
Q ss_pred CCCCcceEEEecCCCcccccCCcCCcCccEEEEecCCCCcccccccccccccCCccCCCCccceeeccCCCCcccccccC
Q 048507 1064 FNSSLEILSIECCRSLTYIAGVQLPPSLKRLYIEFCDNIRTLTVEEGVQRSSSSRRCTSSLLEELDINSCPSLTCIFSKN 1143 (1448)
Q Consensus 1064 ~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~ 1143 (1448)
......+++|++|++++|.-...
T Consensus 317 ------------------~~~~~~l~~L~~L~Ls~n~l~~~--------------------------------------- 339 (520)
T 2z7x_B 317 ------------------MLCPSKISPFLHLDFSNNLLTDT--------------------------------------- 339 (520)
T ss_dssp ------------------CCCCSSCCCCCEEECCSSCCCTT---------------------------------------
T ss_pred ------------------ccchhhCCcccEEEeECCccChh---------------------------------------
Confidence 11112233344444443321110
Q ss_pred CCchhhhccccCCCCccccEEEEecCCCch--hhhhhcccCCccceeeecccccccccCcc-cCCCCCccEEEcccCCCc
Q 048507 1144 ELPATLESLEVGNLPESLKSLRVWDCPKLE--SIAERLDNNTSLEIIRIAYCENLKILPSG-LHNLRQLQEIEIRRCGNL 1220 (1448)
Q Consensus 1144 ~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~-l~~l~~L~~L~L~~~~~l 1220 (1448)
.|..+ ..+ ++|++|++++|...+ .+|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|...
T Consensus 340 -~~~~~-----~~l-~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 340 -VFENC-----GHL-TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412 (520)
T ss_dssp -TTTTC-----CCC-SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred -hhhhh-----ccC-CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence 11111 111 277788887777665 56677888888888888888877756654 677888888888888766
Q ss_pred cccCCCCCCCCCccEEEecCccCccccccccCCCCcccceec-ccCCCcccc
Q 048507 1221 VSFPKGGLPGAKLTRLEISDCNRLEALPKGLHNLKSLQELRI-GVELPSLEE 1271 (1448)
Q Consensus 1221 ~~lp~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~ 1271 (1448)
+.+|..+. ++|++|++++|... .+|..+..+++|++|++ +|.+..++.
T Consensus 413 ~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~ 461 (520)
T 2z7x_B 413 DTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPD 461 (520)
T ss_dssp GGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCT
T ss_pred cchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCH
Confidence 66665543 68888888887644 77877778888888777 555554443
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=4.3e-29 Score=315.68 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=22.7
Q ss_pred hhhcccccccccCCCCeeeecCCCCccc
Q 048507 653 RLKKLCADMGNLAKLHHLKNSNTKSLEE 680 (1448)
Q Consensus 653 ~~~~lp~~i~~L~~L~~L~l~~~~~l~~ 680 (1448)
.+..+|..|+++++|++|++++|. +..
T Consensus 194 ~l~~ip~~l~~l~~L~~L~Ls~n~-l~~ 220 (636)
T 4eco_A 194 NITFVSKAVMRLTKLRQFYMGNSP-FVA 220 (636)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCC-CCG
T ss_pred CCccCCHHHhcccCCCEEECcCCc-ccc
Confidence 344499999999999999999999 555
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=7.5e-29 Score=316.43 Aligned_cols=229 Identities=13% Similarity=0.119 Sum_probs=115.1
Q ss_pred cccceEEecccCCccccccccCccCC-cceeeeccCCCCcccCCCCC-c--cccceeEecccCCCCccchhh---ccCCC
Q 048507 993 CRLEYLELNECKGLVKLPQSSLSLSS-LREIEICGCSSLVSFPEVAL-P--AKLRIISINSCDALKWLPEAW---MCDFN 1065 (1448)
Q Consensus 993 ~~L~~L~L~~~~~l~~lp~~~~~l~~-L~~L~L~~c~~l~~~~~~~~-~--~~L~~L~l~~~~~l~~lp~~~---~~~~~ 1065 (1448)
++|+.|++++|... .+|..+..+++ |++|++++|. +..+|.... . ++|+.|++++|...+.+|... ..-.+
T Consensus 595 ~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~ 672 (876)
T 4ecn_A 595 VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672 (876)
T ss_dssp SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCC
T ss_pred CcceEEECcCCccc-cchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccC
Confidence 35555666665543 77878888888 9999999875 456765322 2 347888888877665444211 11123
Q ss_pred CCcceEEEecCCCcccccCC--cCCcCccEEEEecCCCCcccccccccccccCCccCCCCccceeeccCCCCcccccccC
Q 048507 1066 SSLEILSIECCRSLTYIAGV--QLPPSLKRLYIEFCDNIRTLTVEEGVQRSSSSRRCTSSLLEELDINSCPSLTCIFSKN 1143 (1448)
Q Consensus 1066 ~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~ 1143 (1448)
++|+.|++++|. ++.++.. ..+++|+.|++++|. +..++
T Consensus 673 ~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip------------------------------------- 713 (876)
T 4ecn_A 673 INASTVTLSYNE-IQKFPTELFATGSPISTIILSNNL-MTSIP------------------------------------- 713 (876)
T ss_dssp CCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCC-CSCCC-------------------------------------
T ss_pred CCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCc-CCccC-------------------------------------
Confidence 356666665553 2222211 123344444444431 11111
Q ss_pred CCchhhhccc---cCCCCccccEEEEecCCCchhhhhhcc--cCCccceeeecccccccccCcccCCCCCccEEEcccCC
Q 048507 1144 ELPATLESLE---VGNLPESLKSLRVWDCPKLESIAERLD--NNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCG 1218 (1448)
Q Consensus 1144 ~~~~~l~~l~---~~~~~~~L~~L~L~~~~~~~~~~~~~~--~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~ 1218 (1448)
..+.... ..++ ++|+.|+|++|... .+|..+. .+++|+.|+|++|.+.+ +|..+.++++|+.|+|++|+
T Consensus 714 ---~~~~~~~~~~l~nl-~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 714 ---ENSLKPKDGNYKNT-YLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp ---TTSSSCTTSCCTTG-GGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB
T ss_pred ---hHHhcccccccccc-CCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC
Confidence 0000000 0000 15555666555444 4454444 55555555555555544 45555555555555555422
Q ss_pred CccccCCCCCCCCCccEEEecCccCccccccccCCCCcccceec-ccCCCccccCCCCCccceeeecccc
Q 048507 1219 NLVSFPKGGLPGAKLTRLEISDCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGLPTNLHSLGIRGNM 1287 (1448)
Q Consensus 1219 ~l~~lp~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~~~~L~~L~l~~n~ 1287 (1448)
++++|...+.+|..+.++++|+.|++ +|.+..+|.. +.++|+.|+|++|+
T Consensus 788 ------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~-l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 788 ------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEK-LTPQLYILDIADNP 838 (876)
T ss_dssp ------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC-CCSSSCEEECCSCT
T ss_pred ------------------CcccccccccChHHHhcCCCCCEEECCCCCCCccCHh-hcCCCCEEECCCCC
Confidence 11224455555555555666666666 4444444443 33456666666664
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1.4e-27 Score=306.49 Aligned_cols=100 Identities=24% Similarity=0.294 Sum_probs=85.6
Q ss_pred CceeEEEeCCCCccccC-ccccCCccceEEeccCccccccC-hhhhccccccEEeccCCchhhccc-ccccccCCCCeee
Q 048507 595 QRLRVFSLRGYRIDELP-DSIGDLRYFRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLC-ADMGNLAKLHHLK 671 (1448)
Q Consensus 595 ~~L~~L~L~~n~i~~lp-~~i~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~lp-~~i~~L~~L~~L~ 671 (1448)
..+++|||++|.|+.+| ..|.++++|++|||++|+|+.+| .+|.+|++|++|+|++|. +..+| ..|++|++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEE
Confidence 46899999999999996 57999999999999999999887 578999999999999974 56665 4589999999999
Q ss_pred ecCCCCccccccc-cCcccccccccc
Q 048507 672 NSNTKSLEEMPVG-IGRLTSLQTLCN 696 (1448)
Q Consensus 672 l~~~~~l~~~p~~-i~~L~~L~~L~~ 696 (1448)
+++|. +..+|.. |+++++|++|+.
T Consensus 131 Ls~N~-l~~l~~~~~~~L~~L~~L~L 155 (635)
T 4g8a_A 131 AVETN-LASLENFPIGHLKTLKELNV 155 (635)
T ss_dssp CTTSC-CCCSTTCCCTTCTTCCEEEC
T ss_pred CCCCc-CCCCChhhhhcCcccCeecc
Confidence 99998 7777764 888888888843
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.4e-27 Score=299.34 Aligned_cols=98 Identities=17% Similarity=0.137 Sum_probs=78.9
Q ss_pred ccCceeEEEeCCCCccccCccccCCccceEEeccCccccccC-hhhhccccccEEeccCCchhhcccccccccCCCCeee
Q 048507 593 KLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 671 (1448)
Q Consensus 593 ~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~~L~~L~ 671 (1448)
.+...+++++++|.++.+|..+. ++|++|+|++|.|..+| ..|.++++|++|+|++|...+..|..|+++++|++|+
T Consensus 29 ~~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ----CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred ccCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 44455899999999999988765 78999999999999776 6889999999999999865555577789999999999
Q ss_pred ecCCCCccccccccCccccccccc
Q 048507 672 NSNTKSLEEMPVGIGRLTSLQTLC 695 (1448)
Q Consensus 672 l~~~~~l~~~p~~i~~L~~L~~L~ 695 (1448)
+++|. +..+|.. .+++|++|+
T Consensus 107 Ls~N~-l~~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 107 VSHNR-LQNISCC--PMASLRHLD 127 (562)
T ss_dssp CTTSC-CCEECSC--CCTTCSEEE
T ss_pred CCCCc-CCccCcc--ccccCCEEE
Confidence 99998 7788876 677777773
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=9.1e-27 Score=299.01 Aligned_cols=111 Identities=23% Similarity=0.349 Sum_probs=90.7
Q ss_pred hhhhh-hhcccCceeEEEeCCCCccccC-ccccCCccceEEeccCccccccC-hhhhccccccEEeccCCchhhccc-cc
Q 048507 585 PSILT-ELFKLQRLRVFSLRGYRIDELP-DSIGDLRYFRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLC-AD 660 (1448)
Q Consensus 585 ~~~~~-~~~~l~~L~~L~L~~n~i~~lp-~~i~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~lp-~~ 660 (1448)
..+++ .|.++++|++|+|++|.|+.+| +.|.+|++|++|+|++|+|+.+| ..|.+|++|++|+|++|. +..+| ..
T Consensus 65 ~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~ 143 (635)
T 4g8a_A 65 RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFP 143 (635)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSC-CCCSTTCC
T ss_pred CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCc-CCCCChhh
Confidence 34554 4558999999999999999985 46899999999999999999888 468999999999999975 44555 45
Q ss_pred ccccCCCCeeeecCCCCccc--cccccCcccccccccce
Q 048507 661 MGNLAKLHHLKNSNTKSLEE--MPVGIGRLTSLQTLCNF 697 (1448)
Q Consensus 661 i~~L~~L~~L~l~~~~~l~~--~p~~i~~L~~L~~L~~~ 697 (1448)
|++|++|++|++++|. +.. +|..++.+++|++|+..
T Consensus 144 ~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 144 IGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLS 181 (635)
T ss_dssp CTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECC
T ss_pred hhcCcccCeeccccCc-cccCCCchhhccchhhhhhccc
Confidence 8999999999999998 543 46678889999988553
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=4.1e-27 Score=283.41 Aligned_cols=75 Identities=27% Similarity=0.311 Sum_probs=48.8
Q ss_pred ccceEEecccCCccccccccCccCCcceeeeccCCCCcccCCCCCccccceeEecccCCCCccchhhccCCCCCcceEEE
Q 048507 994 RLEYLELNECKGLVKLPQSSLSLSSLREIEICGCSSLVSFPEVALPAKLRIISINSCDALKWLPEAWMCDFNSSLEILSI 1073 (1448)
Q Consensus 994 ~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~L~~L~l 1073 (1448)
+|++|++++|.. +.+| .+..+++|++|++++| .+..+|.. +.+|++|++++|... .+|. + ..+++|++|++
T Consensus 132 ~L~~L~L~~n~l-~~lp-~~~~l~~L~~L~l~~N-~l~~lp~~--~~~L~~L~L~~n~l~-~l~~-~--~~l~~L~~L~l 202 (454)
T 1jl5_A 132 LLEYLGVSNNQL-EKLP-ELQNSSFLKIIDVDNN-SLKKLPDL--PPSLEFIAAGNNQLE-ELPE-L--QNLPFLTAIYA 202 (454)
T ss_dssp TCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSCCS-SCCC-C--TTCTTCCEEEC
T ss_pred CCCEEECcCCCC-CCCc-ccCCCCCCCEEECCCC-cCcccCCC--cccccEEECcCCcCC-cCcc-c--cCCCCCCEEEC
Confidence 455566655443 3466 5788899999999997 45556643 357888888887543 3552 2 24666777777
Q ss_pred ecCC
Q 048507 1074 ECCR 1077 (1448)
Q Consensus 1074 ~~c~ 1077 (1448)
++|.
T Consensus 203 ~~N~ 206 (454)
T 1jl5_A 203 DNNS 206 (454)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 6653
No 26
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=9.7e-27 Score=294.12 Aligned_cols=351 Identities=17% Similarity=0.194 Sum_probs=269.8
Q ss_pred cCCccccccccCccCCcceeeeccCCCCcc-----------------cCC-CC--CccccceeEecccCCCCccchhhcc
Q 048507 1003 CKGLVKLPQSSLSLSSLREIEICGCSSLVS-----------------FPE-VA--LPAKLRIISINSCDALKWLPEAWMC 1062 (1448)
Q Consensus 1003 ~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~-----------------~~~-~~--~~~~L~~L~l~~~~~l~~lp~~~~~ 1062 (1448)
++.++.+|..+..+++|++|++++|..... +|. +. .+++|++|++++|...+.+|..+.
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~- 270 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK- 270 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT-
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh-
Confidence 344555898999999999999999864432 775 44 688999999999998999997765
Q ss_pred CCCCCcceEEEecCCCccc--ccC-C------cCCcCccEEEEecCCCCcccccccccccccCCccCCCCccceeeccCC
Q 048507 1063 DFNSSLEILSIECCRSLTY--IAG-V------QLPPSLKRLYIEFCDNIRTLTVEEGVQRSSSSRRCTSSLLEELDINSC 1133 (1448)
Q Consensus 1063 ~~~~~L~~L~l~~c~~l~~--~~~-~------~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 1133 (1448)
.+++|++|++++|..++. ++. + ..+++|++|++++|.-- .++... ....+++|+.|+++++
T Consensus 271 -~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~--------~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 271 -ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVET--------SLQKMKKLGMLECLYN 340 (636)
T ss_dssp -TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHH--------HHTTCTTCCEEECCSC
T ss_pred -cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchh--------hhccCCCCCEEeCcCC
Confidence 589999999999874442 432 1 22378999999988533 443200 2234677999999987
Q ss_pred CCcccccccCCCchhhhccccCCCCccccEEEEecCCCchhhhhhcccCCc-cceeeecccccccccCcccCCCC--Ccc
Q 048507 1134 PSLTCIFSKNELPATLESLEVGNLPESLKSLRVWDCPKLESIAERLDNNTS-LEIIRIAYCENLKILPSGLHNLR--QLQ 1210 (1448)
Q Consensus 1134 ~~l~~i~~~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-L~~L~Ls~n~~~~~~p~~l~~l~--~L~ 1210 (1448)
.-- +.+| .+..+ ++|++|++++|... .+|..+..+++ |++|++++|.+. .+|..+..++ +|+
T Consensus 341 ~l~------g~ip-~~~~l------~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~ 405 (636)
T 4eco_A 341 QLE------GKLP-AFGSE------IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMS 405 (636)
T ss_dssp CCE------EECC-CCEEE------EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEE
T ss_pred cCc------cchh-hhCCC------CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccC
Confidence 532 1233 33333 39999999998766 88888999999 999999999877 7888877654 999
Q ss_pred EEEcccCCCccccCCCCC-------CCCCccEEEecCccCccccccc-cCCCCcccceec-ccCCCccccCCCC------
Q 048507 1211 EIEIRRCGNLVSFPKGGL-------PGAKLTRLEISDCNRLEALPKG-LHNLKSLQELRI-GVELPSLEEDGLP------ 1275 (1448)
Q Consensus 1211 ~L~L~~~~~l~~lp~~~~-------~~~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~l-~~~l~~~~~~~~~------ 1275 (1448)
.|++++|...+.+|..+. .+++|++|++++|... .+|.. +..+++|++|++ +|.+..++...+.
T Consensus 406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~ 484 (636)
T 4eco_A 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484 (636)
T ss_dssp EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEEC
T ss_pred EEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccc
Confidence 999999988888887776 6789999999998866 66655 557999999999 7778877765443
Q ss_pred ---CccceeeecccccccccccccCCccc--cCCCccEEEEecCCCcCccccccccccCCCCCCCCCcCeEEEc------
Q 048507 1276 ---TNLHSLGIRGNMEIWKSTIERGRGFH--RFSSLQHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTTLWIY------ 1344 (1448)
Q Consensus 1276 ---~~L~~L~l~~n~~~~~~~~~~~~~~~--~l~~L~~L~l~~c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~------ 1344 (1448)
++|+.|++++|... ..+..+. .+++|++|++++| .+..+|. .+..+++|+.|+++
T Consensus 485 ~~l~~L~~L~Ls~N~l~-----~lp~~~~~~~l~~L~~L~Ls~N--~l~~ip~-------~~~~l~~L~~L~Ls~N~~ls 550 (636)
T 4eco_A 485 KNTYLLTSIDLRFNKLT-----KLSDDFRATTLPYLVGIDLSYN--SFSKFPT-------QPLNSSTLKGFGIRNQRDAQ 550 (636)
T ss_dssp TTGGGCCEEECCSSCCC-----BCCGGGSTTTCTTCCEEECCSS--CCSSCCC-------GGGGCSSCCEEECCSCBCTT
T ss_pred cccCCccEEECcCCcCC-----ccChhhhhccCCCcCEEECCCC--CCCCcCh-------hhhcCCCCCEEECCCCcccc
Confidence 18999999999633 3344554 8999999999995 3444554 34678999999995
Q ss_pred cCCCCccccccccCCCCCCeEeecCCCCCCcCCCCCCcccccceeccCCchH
Q 048507 1345 NFPNLERLSSSIVDLQNLTELRLLNCPKLKYFPEKGLPSSLLQLSIYRCPLI 1396 (1448)
Q Consensus 1345 ~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~i~~c~~l 1396 (1448)
+|...+.+|.++..+++|+.|++++|+ ++.+|.. +.++|+.|++++||..
T Consensus 551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~-~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 551 GNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEK-ITPNISVLDIKDNPNI 600 (636)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-CCTTCCEEECCSCTTC
T ss_pred cCcccccChHHHhcCCCCCEEECCCCc-CCccCHh-HhCcCCEEECcCCCCc
Confidence 455678899999999999999999976 5999975 5589999999999743
No 27
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=3.6e-26 Score=291.77 Aligned_cols=348 Identities=16% Similarity=0.158 Sum_probs=267.9
Q ss_pred CCccccccccCccCCcceeeeccCCCCc-----------------ccCC-CC--CccccceeEecccCCCCccchhhccC
Q 048507 1004 KGLVKLPQSSLSLSSLREIEICGCSSLV-----------------SFPE-VA--LPAKLRIISINSCDALKWLPEAWMCD 1063 (1448)
Q Consensus 1004 ~~l~~lp~~~~~l~~L~~L~L~~c~~l~-----------------~~~~-~~--~~~~L~~L~l~~~~~l~~lp~~~~~~ 1063 (1448)
+.+..+|..+..+++|++|+|++|.... .+|. +. .+++|++|++++|...+.+|..+.
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~-- 512 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-- 512 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG--
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh--
Confidence 3444489999999999999999986444 1775 33 689999999999999999997776
Q ss_pred CCCCcceEEEecCCCccc--cc--------CCcCCcCccEEEEecCCCCcccccccccccccCCccCCCCccceeeccCC
Q 048507 1064 FNSSLEILSIECCRSLTY--IA--------GVQLPPSLKRLYIEFCDNIRTLTVEEGVQRSSSSRRCTSSLLEELDINSC 1133 (1448)
Q Consensus 1064 ~~~~L~~L~l~~c~~l~~--~~--------~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 1133 (1448)
.+++|+.|++++|..++. +| ....+++|+.|++++|.-- .++.. .....+++|+.|+++++
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~--------~~l~~L~~L~~L~Ls~N 583 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPAS--------ASLQKMVKLGLLDCVHN 583 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCH--------HHHTTCTTCCEEECTTS
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCCh--------hhhhcCCCCCEEECCCC
Confidence 589999999999874443 33 2234568999999998533 44320 02334677999999987
Q ss_pred CCcccccccCCCchhhhccccCCCCccccEEEEecCCCchhhhhhcccCCc-cceeeecccccccccCcccCCCCC--cc
Q 048507 1134 PSLTCIFSKNELPATLESLEVGNLPESLKSLRVWDCPKLESIAERLDNNTS-LEIIRIAYCENLKILPSGLHNLRQ--LQ 1210 (1448)
Q Consensus 1134 ~~l~~i~~~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-L~~L~Ls~n~~~~~~p~~l~~l~~--L~ 1210 (1448)
.-- .+| .+ ..+ ++|+.|++++|... .+|..+..+++ |+.|+|++|.+. .+|..+..++. |+
T Consensus 584 ~l~-------~lp-~~-----~~L-~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~ 647 (876)
T 4ecn_A 584 KVR-------HLE-AF-----GTN-VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMG 647 (876)
T ss_dssp CCC-------BCC-CC-----CTT-SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEE
T ss_pred Ccc-------cch-hh-----cCC-CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCC
Confidence 532 223 22 223 39999999999877 88988999999 999999999877 78888877654 99
Q ss_pred EEEcccCCCccccCCC---C--CCCCCccEEEecCccCcccccccc-CCCCcccceec-ccCCCccccCCCC--------
Q 048507 1211 EIEIRRCGNLVSFPKG---G--LPGAKLTRLEISDCNRLEALPKGL-HNLKSLQELRI-GVELPSLEEDGLP-------- 1275 (1448)
Q Consensus 1211 ~L~L~~~~~l~~lp~~---~--~~~~~L~~L~l~~~~~~~~~p~~l-~~l~~L~~L~l-~~~l~~~~~~~~~-------- 1275 (1448)
.|+|++|...+.+|.. . ..+++|+.|++++|.+. .+|..+ ..+++|+.|++ +|.+..++...+.
T Consensus 648 ~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~n 726 (876)
T 4ecn_A 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726 (876)
T ss_dssp EEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTT
T ss_pred EEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccc
Confidence 9999998876655532 2 23469999999998866 677665 58999999999 6778877765432
Q ss_pred -CccceeeecccccccccccccCCccc--cCCCccEEEEecCCCcCccccccccccCCCCCCCCCcCeEEEcc------C
Q 048507 1276 -TNLHSLGIRGNMEIWKSTIERGRGFH--RFSSLQHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTTLWIYN------F 1346 (1448)
Q Consensus 1276 -~~L~~L~l~~n~~~~~~~~~~~~~~~--~l~~L~~L~l~~c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~------~ 1346 (1448)
++|+.|++++|... ..+..+. .+++|+.|+|++| .+..+|. .+..+++|+.|+|++ |
T Consensus 727 l~~L~~L~Ls~N~L~-----~lp~~l~~~~l~~L~~L~Ls~N--~L~~lp~-------~l~~L~~L~~L~Ls~N~~ls~N 792 (876)
T 4ecn_A 727 TYLLTTIDLRFNKLT-----SLSDDFRATTLPYLSNMDVSYN--CFSSFPT-------QPLNSSQLKAFGIRHQRDAEGN 792 (876)
T ss_dssp GGGCCEEECCSSCCC-----CCCGGGSTTTCTTCCEEECCSS--CCSSCCC-------GGGGCTTCCEEECCCCBCTTCC
T ss_pred cCCccEEECCCCCCc-----cchHHhhhccCCCcCEEEeCCC--CCCccch-------hhhcCCCCCEEECCCCCCcccc
Confidence 28999999999532 3345555 8999999999996 3444553 346889999999987 5
Q ss_pred CCCccccccccCCCCCCeEeecCCCCCCcCCCCCCcccccceeccCCch
Q 048507 1347 PNLERLSSSIVDLQNLTELRLLNCPKLKYFPEKGLPSSLLQLSIYRCPL 1395 (1448)
Q Consensus 1347 ~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~i~~c~~ 1395 (1448)
...+.+|.++.++++|+.|++++|+ ++.+|.. +.++|+.|++++||.
T Consensus 793 ~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~-l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 793 RILRQWPTGITTCPSLIQLQIGSND-IRKVDEK-LTPQLYILDIADNPN 839 (876)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-CCSSSCEEECCSCTT
T ss_pred cccccChHHHhcCCCCCEEECCCCC-CCccCHh-hcCCCCEEECCCCCC
Confidence 5577899999999999999999976 5999985 557999999999974
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=7.3e-26 Score=283.63 Aligned_cols=104 Identities=30% Similarity=0.333 Sum_probs=88.3
Q ss_pred hhhhhhcccCceeEEEeCCCCccccC-ccccCCccceEEeccCcccccc-ChhhhccccccEEeccCCchhhcccccccc
Q 048507 586 SILTELFKLQRLRVFSLRGYRIDELP-DSIGDLRYFRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCDRLKKLCADMGN 663 (1448)
Q Consensus 586 ~~~~~~~~l~~L~~L~L~~n~i~~lp-~~i~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~ 663 (1448)
.+|..+. ++|++|+|++|.|+.+| ..|+++++|++|+|++|.|+.+ |..|.++++|++|+|++| .+..+|.. .
T Consensus 45 ~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~ 119 (562)
T 3a79_B 45 HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--P 119 (562)
T ss_dssp SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--C
T ss_pred cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--c
Confidence 3555443 78999999999999886 6899999999999999999977 678999999999999997 46688877 8
Q ss_pred cCCCCeeeecCCCCccccc--cccCccccccccc
Q 048507 664 LAKLHHLKNSNTKSLEEMP--VGIGRLTSLQTLC 695 (1448)
Q Consensus 664 L~~L~~L~l~~~~~l~~~p--~~i~~L~~L~~L~ 695 (1448)
+++|++|++++|. +..+| ..++++++|++|+
T Consensus 120 l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~ 152 (562)
T 3a79_B 120 MASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLG 152 (562)
T ss_dssp CTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEE
T ss_pred cccCCEEECCCCC-ccccCchHhhcccCcccEEe
Confidence 9999999999999 66654 5688888877773
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=2e-25 Score=277.56 Aligned_cols=396 Identities=14% Similarity=0.065 Sum_probs=245.4
Q ss_pred CCcceEeecCCCCccccchhhhhHHHhhhhhhccccceEEecccCCccccccccCccCCcceeeeccCCCCcccCCCCCc
Q 048507 960 CSLKRLTIDSCPTLQSLVAEEEKDQQQQLCELSCRLEYLELNECKGLVKLPQSSLSLSSLREIEICGCSSLVSFPEVALP 1039 (1448)
Q Consensus 960 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~~~~~~~~ 1039 (1448)
++|++|++++|. ++.+++..+ ..+++|++|++++|...+..|..+..+++|++|++++| .+..+|.. .+
T Consensus 21 ~~L~~L~Ls~n~-i~~~~~~~~--------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~l 89 (520)
T 2z7x_B 21 QKTTILNISQNY-ISELWTSDI--------LSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH-PT 89 (520)
T ss_dssp TTCSEEECCSSC-CCCCCHHHH--------TTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC-CC
T ss_pred ccccEEECCCCc-ccccChhhc--------cccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc-cc
Confidence 677777777753 444443221 22467777777776655555667777777777777776 45566655 67
Q ss_pred cccceeEecccCCCC-ccchhhccCCCCCcceEEEecCCCcccccCCcCCcCc--cEEEEecCCC--Ccccccccccc--
Q 048507 1040 AKLRIISINSCDALK-WLPEAWMCDFNSSLEILSIECCRSLTYIAGVQLPPSL--KRLYIEFCDN--IRTLTVEEGVQ-- 1112 (1448)
Q Consensus 1040 ~~L~~L~l~~~~~l~-~lp~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L--~~L~l~~~~~--l~~l~~~~~~~-- 1112 (1448)
++|++|++++|...+ .+|..+. .+++|++|++++|..-. ..+..+++| +.|++++|.. ....+......
T Consensus 90 ~~L~~L~L~~N~l~~~~~p~~~~--~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~ 165 (520)
T 2z7x_B 90 VNLKHLDLSFNAFDALPICKEFG--NMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT 165 (520)
T ss_dssp CCCSEEECCSSCCSSCCCCGGGG--GCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE
T ss_pred CCccEEeccCCccccccchhhhc--cCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccccccccc
Confidence 777777777776554 3555554 47777777777765322 223334555 7777777654 12111111100
Q ss_pred --------------cccCCccCCCCccceeeccCCCCcccccccCCCchhhhccccCCCC--------------------
Q 048507 1113 --------------RSSSSRRCTSSLLEELDINSCPSLTCIFSKNELPATLESLEVGNLP-------------------- 1158 (1448)
Q Consensus 1113 --------------~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~l~~~~~~-------------------- 1158 (1448)
.........+++|+.+++++|.....+ ..++..+. .+..++
T Consensus 166 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~~~~ 240 (520)
T 2z7x_B 166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC---SYFLSILA--KLQTNPKLSNLTLNNIETTWNSFIRI 240 (520)
T ss_dssp EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTT---HHHHHHHH--GGGGCTTCCEEEEEEEEEEHHHHHHH
T ss_pred ceEEEEeccCcchhhhhhhhhhcccceeecccccccccccc---ceeecchh--hhccccchhhccccccccCHHHHHHH
Confidence 001112234667777777775310000 00001111 011111
Q ss_pred ------ccccEEEEecCCCchhhhhhc-----ccCCccceeeecccccccccC-cccCCC---CCccEEEcccCCCcccc
Q 048507 1159 ------ESLKSLRVWDCPKLESIAERL-----DNNTSLEIIRIAYCENLKILP-SGLHNL---RQLQEIEIRRCGNLVSF 1223 (1448)
Q Consensus 1159 ------~~L~~L~L~~~~~~~~~~~~~-----~~l~~L~~L~Ls~n~~~~~~p-~~l~~l---~~L~~L~L~~~~~l~~l 1223 (1448)
++|++|++++|...+.+|..+ +.+++|+.+++++|.+ .+| ..+..+ ++|+.|++++|... .+
T Consensus 241 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~-~~ 317 (520)
T 2z7x_B 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMV-HM 317 (520)
T ss_dssp HHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCC-CC
T ss_pred HHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccc-cc
Confidence 145555555554444444444 4555555555555444 333 222222 34666666655422 22
Q ss_pred CCCCCCCCCccEEEecCccCccccccccCCCCcccceec-ccCCCcccc----CCCCCccceeeeccccccccccc-ccC
Q 048507 1224 PKGGLPGAKLTRLEISDCNRLEALPKGLHNLKSLQELRI-GVELPSLEE----DGLPTNLHSLGIRGNMEIWKSTI-ERG 1297 (1448)
Q Consensus 1224 p~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~----~~~~~~L~~L~l~~n~~~~~~~~-~~~ 1297 (1448)
+. ...+++|++|++++|...+.+|..+..+++|++|++ .|.+..++. ....++|+.|++++|... . .+.
T Consensus 318 ~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~----~~l~~ 392 (520)
T 2z7x_B 318 LC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS----YDEKK 392 (520)
T ss_dssp CC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCB----CCGGG
T ss_pred cc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCC----ccccc
Confidence 21 146789999999999988889999999999999999 677775433 345689999999999643 3 444
Q ss_pred CccccCCCccEEEEecCCCcCccccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCC
Q 048507 1298 RGFHRFSSLQHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFP 1377 (1448)
Q Consensus 1298 ~~~~~l~~L~~L~l~~c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp 1377 (1448)
..+..+++|++|++++|. ....+|.. .+++|+.|++++| .++.+|.++..+++|+.|++++| .++.+|
T Consensus 393 ~~~~~l~~L~~L~Ls~N~-l~~~~~~~---------l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~ 460 (520)
T 2z7x_B 393 GDCSWTKSLLSLNMSSNI-LTDTIFRC---------LPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVP 460 (520)
T ss_dssp CSCCCCTTCCEEECCSSC-CCGGGGGS---------CCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCC
T ss_pred chhccCccCCEEECcCCC-CCcchhhh---------hcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccC
Confidence 568889999999999963 22333321 2379999999996 67799998889999999999997 588999
Q ss_pred CC--CCcccccceeccCCch
Q 048507 1378 EK--GLPSSLLQLSIYRCPL 1395 (1448)
Q Consensus 1378 ~~--~~~~~L~~L~i~~c~~ 1395 (1448)
.. ...++|+.|++++||.
T Consensus 461 ~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 461 DGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp TTTTTTCTTCCEEECCSSCB
T ss_pred HHHhccCCcccEEECcCCCC
Confidence 85 3368999999999874
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=2.5e-25 Score=268.09 Aligned_cols=98 Identities=22% Similarity=0.236 Sum_probs=81.3
Q ss_pred hhhhcccCceeEEEeCCCCccccCccccCCccceEEeccCccccccChhhhccccccEEeccCCchhhcccccccccCCC
Q 048507 588 LTELFKLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKL 667 (1448)
Q Consensus 588 ~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~~L 667 (1448)
+..+.++++|++|++++|.++.+| .|+.+++|++|+|++|.++.+| ++.+++|++|++++|. +..+| ++.+++|
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L 108 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKL 108 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTC
T ss_pred ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcC
Confidence 335568899999999999999887 6899999999999999999886 8899999999999974 55554 8899999
Q ss_pred CeeeecCCCCccccccccCcccccccc
Q 048507 668 HHLKNSNTKSLEEMPVGIGRLTSLQTL 694 (1448)
Q Consensus 668 ~~L~l~~~~~l~~~p~~i~~L~~L~~L 694 (1448)
++|++++|. +..+| ++.+++|++|
T Consensus 109 ~~L~L~~N~-l~~l~--~~~l~~L~~L 132 (457)
T 3bz5_A 109 TYLNCDTNK-LTKLD--VSQNPLLTYL 132 (457)
T ss_dssp CEEECCSSC-CSCCC--CTTCTTCCEE
T ss_pred CEEECCCCc-CCeec--CCCCCcCCEE
Confidence 999999998 66665 6666666666
No 31
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=2.4e-24 Score=259.24 Aligned_cols=60 Identities=13% Similarity=0.099 Sum_probs=28.5
Q ss_pred cccCceeEEEeCCCCccccCccccCCccceEEeccCcccc-ccChhhhccccccEEeccCC
Q 048507 592 FKLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIR-TLPESVNKLYNLHSLLLEDC 651 (1448)
Q Consensus 592 ~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~n 651 (1448)
.+..+|++|++++|.++.+|++|+++++|++|++++|.+. .+|.+++++++|++++++.|
T Consensus 8 ~~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c 68 (454)
T 1jl5_A 8 VSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHH
T ss_pred cccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhh
Confidence 3568999999999999999999999999999999999988 89999999998755555444
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=9.2e-24 Score=257.99 Aligned_cols=88 Identities=17% Similarity=0.134 Sum_probs=55.2
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCC-CCCCCCccEEEe
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKG-GLPGAKLTRLEI 1238 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~-~~~~~~L~~L~l 1238 (1448)
+|++|++++|...+..|..+.++++|++|++++|.+.+..|..+..+++|++|+|++|+ ++.+|.. +..+++|++|++
T Consensus 324 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWL 402 (455)
T ss_dssp TCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred cCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEc
Confidence 56666666666655556666666777777777766666666666666777777776653 3344443 345666777777
Q ss_pred cCccCccccc
Q 048507 1239 SDCNRLEALP 1248 (1448)
Q Consensus 1239 ~~~~~~~~~p 1248 (1448)
++|+..+..|
T Consensus 403 ~~N~l~~~~~ 412 (455)
T 3v47_A 403 HTNPWDCSCP 412 (455)
T ss_dssp CSSCBCCCTT
T ss_pred cCCCcccCCC
Confidence 7766655544
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=3.8e-23 Score=252.17 Aligned_cols=96 Identities=18% Similarity=0.360 Sum_probs=78.3
Q ss_pred ccCceeEEEeCCCCccccCccccCCccceEEeccCccccccChhhhccccccEEeccCCchhhcccccccccCCCCeeee
Q 048507 593 KLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 672 (1448)
Q Consensus 593 ~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~~L~~L~l 672 (1448)
.+++|+.|+++++.+..+|. +..+++|++|+|++|.+..+|. +.++++|++|++++|. +..+|. ++++++|++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEEC
T ss_pred HhccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCc-cccChh-hcCCCCCCEEEC
Confidence 46788999999999988875 7889999999999999998877 8999999999999874 455555 899999999999
Q ss_pred cCCCCccccccccCcccccccc
Q 048507 673 SNTKSLEEMPVGIGRLTSLQTL 694 (1448)
Q Consensus 673 ~~~~~l~~~p~~i~~L~~L~~L 694 (1448)
++|. +..+|. ++++++|++|
T Consensus 120 ~~n~-l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 120 FNNQ-ITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp CSSC-CCCCGG-GTTCTTCSEE
T ss_pred CCCC-CCCChH-HcCCCCCCEE
Confidence 9987 666654 5666666655
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=1.3e-23 Score=253.22 Aligned_cols=117 Identities=20% Similarity=0.177 Sum_probs=93.9
Q ss_pred hhccccccEeeccccccCCCCCCchhhhhhhcccCceeEEEeCCCCccccCccccCCccceEEeccCccccccChhhhcc
Q 048507 561 LYDIQHLRTFLPVMLSNSLHGYLAPSILTELFKLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPESVNKL 640 (1448)
Q Consensus 561 ~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp~~i~~L 640 (1448)
+.++++|+.|.... .....+| .+..+++|++|+|++|.++.+| ++.+++|++|++++|.++.+| ++++
T Consensus 38 ~~~l~~L~~L~Ls~-------n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l 105 (457)
T 3bz5_A 38 EEQLATLTSLDCHN-------SSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPL 105 (457)
T ss_dssp HHHHTTCCEEECCS-------SCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTC
T ss_pred hhHcCCCCEEEccC-------CCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCC
Confidence 45567777774322 1112233 5779999999999999999986 899999999999999999886 8999
Q ss_pred ccccEEeccCCchhhcccccccccCCCCeeeecCCCCccccccccCccccccccc
Q 048507 641 YNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLC 695 (1448)
Q Consensus 641 ~~L~~L~L~~n~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~ 695 (1448)
++|++|++++|. +..+| ++.+++|++|++++|. +..++ ++.+++|++|+
T Consensus 106 ~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~ 154 (457)
T 3bz5_A 106 TKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELD 154 (457)
T ss_dssp TTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEE
T ss_pred CcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEE
Confidence 999999999984 55565 8999999999999998 66664 67777777773
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=5e-23 Score=251.49 Aligned_cols=130 Identities=19% Similarity=0.127 Sum_probs=95.1
Q ss_pred ccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEe
Q 048507 1159 ESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEI 1238 (1448)
Q Consensus 1159 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l 1238 (1448)
++|++|++++|...+..|..++.+++|++|++++|.+.+..|..+..+++|++|+|++|......|..+..+++|++|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 47888888888887777778888888888888888877777777888888888888887554444555666788888888
Q ss_pred cCccCccccccccCCCCcccceec-ccCCCccccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecC
Q 048507 1239 SDCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGC 1314 (1448)
Q Consensus 1239 ~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c 1314 (1448)
++|...+..|..+..+++|++|++ +|.+..++ +..+..+++|++|++++|
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------------------------~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVP--------------------------DGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC--------------------------TTTTTTCTTCCEEECCSS
T ss_pred CCCcccccChhhccccccccEEECCCCccccCC--------------------------HhHhccCCcccEEEccCC
Confidence 888776666777777777777777 44444433 334566677777777764
No 36
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=6.9e-22 Score=240.96 Aligned_cols=348 Identities=17% Similarity=0.139 Sum_probs=228.5
Q ss_pred ccCCcceEeecCCCCccccchhhhhHHHhhhhhhccccceEEecccCCccccccccCccCCcceeeeccCCCCcccCCCC
Q 048507 958 DICSLKRLTIDSCPTLQSLVAEEEKDQQQQLCELSCRLEYLELNECKGLVKLPQSSLSLSSLREIEICGCSSLVSFPEVA 1037 (1448)
Q Consensus 958 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~~~~~~ 1037 (1448)
.+++++.|++.++. ++.++. ...+++|++|++++|.. ..++. +..+++|++|++++| .+..++.+.
T Consensus 44 ~l~~l~~L~l~~~~-i~~l~~----------~~~l~~L~~L~Ls~n~l-~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~ 109 (466)
T 1o6v_A 44 DLDQVTTLQADRLG-IKSIDG----------VEYLNNLTQINFSNNQL-TDITP-LKNLTKLVDILMNNN-QIADITPLA 109 (466)
T ss_dssp HHHTCCEEECCSSC-CCCCTT----------GGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSS-CCCCCGGGT
T ss_pred HhccccEEecCCCC-CccCcc----------hhhhcCCCEEECCCCcc-CCchh-hhccccCCEEECCCC-ccccChhhc
Confidence 35667777777653 334432 12356788888887653 44444 777888888888876 444455466
Q ss_pred CccccceeEecccCCCCccchhhccCCCCCcceEEEecCCCcccccCCcCCcCccEEEEecCCCCcccccccccccccCC
Q 048507 1038 LPAKLRIISINSCDALKWLPEAWMCDFNSSLEILSIECCRSLTYIAGVQLPPSLKRLYIEFCDNIRTLTVEEGVQRSSSS 1117 (1448)
Q Consensus 1038 ~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 1117 (1448)
.+++|++|++++|.. ..++. + ..+++|++|++++|. +..++.+..+++|+.|++.++ +..++
T Consensus 110 ~l~~L~~L~L~~n~l-~~~~~-~--~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~--~~~~~----------- 171 (466)
T 1o6v_A 110 NLTNLTGLTLFNNQI-TDIDP-L--KNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQ--VTDLK----------- 171 (466)
T ss_dssp TCTTCCEEECCSSCC-CCCGG-G--TTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEES--CCCCG-----------
T ss_pred CCCCCCEEECCCCCC-CCChH-H--cCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCc--ccCch-----------
Confidence 677888888887754 33443 2 257888888888774 455555666777888887642 11111
Q ss_pred ccCCCCccceeeccCCCCcccccccCCCchhhhccccCCCCccccEEEEecCCCchhhhhhcccCCccceeeeccccccc
Q 048507 1118 RRCTSSLLEELDINSCPSLTCIFSKNELPATLESLEVGNLPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLK 1197 (1448)
Q Consensus 1118 ~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~ 1197 (1448)
....+++|+.|++++|. ++.+ + .+.. + ++|++|++++|...+..| ++.+++|++|++++|.+.+
T Consensus 172 ~~~~l~~L~~L~l~~n~-l~~~------~-~l~~-----l-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 235 (466)
T 1o6v_A 172 PLANLTTLERLDISSNK-VSDI------S-VLAK-----L-TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD 235 (466)
T ss_dssp GGTTCTTCCEEECCSSC-CCCC------G-GGGG-----C-TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred hhccCCCCCEEECcCCc-CCCC------h-hhcc-----C-CCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc
Confidence 12345668888887764 2211 1 1222 2 388888888887766555 7778888888888877654
Q ss_pred ccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEecCccCccccccccCCCCcccceec-ccCCCccccCCCCC
Q 048507 1198 ILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEISDCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGLPT 1276 (1448)
Q Consensus 1198 ~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~~~ 1276 (1448)
+ ..+..+++|+.|++++|.... ++. +..+++|++|++++|...+. |. +..+++|++|++ ++.+..++....++
T Consensus 236 -~-~~l~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~ 309 (466)
T 1o6v_A 236 -I-GTLASLTNLTDLDLANNQISN-LAP-LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISPISNLK 309 (466)
T ss_dssp -C-GGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGGGGGCT
T ss_pred -c-hhhhcCCCCCEEECCCCcccc-chh-hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchhhcCCC
Confidence 3 356778888888888875443 333 56678888888888775553 33 778888888888 66676666655667
Q ss_pred ccceeeecccccccccccccCCccccCCCccEEEEecCCCcCccccccccccCCCCCCCCCcCeEEEccCCCCccccccc
Q 048507 1277 NLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSI 1356 (1448)
Q Consensus 1277 ~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~ 1356 (1448)
+|+.|++++|... ... .+..+++|++|++++| .+..++ .+..+++|+.|++++|...+..| +
T Consensus 310 ~L~~L~L~~n~l~----~~~--~~~~l~~L~~L~l~~n--~l~~~~--------~l~~l~~L~~L~l~~n~l~~~~~--~ 371 (466)
T 1o6v_A 310 NLTYLTLYFNNIS----DIS--PVSSLTKLQRLFFYNN--KVSDVS--------SLANLTNINWLSAGHNQISDLTP--L 371 (466)
T ss_dssp TCSEEECCSSCCS----CCG--GGGGCTTCCEEECCSS--CCCCCG--------GGTTCTTCCEEECCSSCCCBCGG--G
T ss_pred CCCEEECcCCcCC----Cch--hhccCccCCEeECCCC--ccCCch--------hhccCCCCCEEeCCCCccCccch--h
Confidence 8888888888532 122 2677888888888885 333332 24677888888888865444444 6
Q ss_pred cCCCCCCeEeecCCCCCCcCCC
Q 048507 1357 VDLQNLTELRLLNCPKLKYFPE 1378 (1448)
Q Consensus 1357 ~~l~~L~~L~l~~c~~l~~lp~ 1378 (1448)
..+++|+.|++++|+ ++.+|.
T Consensus 372 ~~l~~L~~L~l~~n~-~~~~p~ 392 (466)
T 1o6v_A 372 ANLTRITQLGLNDQA-WTNAPV 392 (466)
T ss_dssp TTCTTCCEEECCCEE-EECCCB
T ss_pred hcCCCCCEEeccCCc-ccCCch
Confidence 788888888888865 555554
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=1.4e-21 Score=228.88 Aligned_cols=302 Identities=17% Similarity=0.132 Sum_probs=160.3
Q ss_pred ccccceEEecccCCccccccccCccCCcceeeeccCCCCcccCCCCCccccceeEecccCCCCccchhhccCCCCCcceE
Q 048507 992 SCRLEYLELNECKGLVKLPQSSLSLSSLREIEICGCSSLVSFPEVALPAKLRIISINSCDALKWLPEAWMCDFNSSLEIL 1071 (1448)
Q Consensus 992 ~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~L~~L 1071 (1448)
+++|++|++++|.. ..++ .+..+++|++|++++| .+..++.+..+++|++|++++|. +..++. + ..+++|++|
T Consensus 43 l~~L~~L~l~~~~i-~~~~-~~~~~~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~L~~n~-i~~~~~-~--~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKV-ASIQ-GIEYLTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTNK-ITDISA-L--QNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCC-CCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG-G--TTCTTCSEE
T ss_pred cccccEEEEeCCcc-ccch-hhhhcCCccEEEccCC-ccccchhhhcCCcCCEEEccCCc-ccCchH-H--cCCCcCCEE
Confidence 35677777776443 3444 3556667777777765 44445445555666666666653 223332 1 135555555
Q ss_pred EEecCCCcccccCCcCCcCccEEEEecCCCCcccccccccccccCCccCCCCccceeeccCCCCcccccccCCCchhhhc
Q 048507 1072 SIECCRSLTYIAGVQLPPSLKRLYIEFCDNIRTLTVEEGVQRSSSSRRCTSSLLEELDINSCPSLTCIFSKNELPATLES 1151 (1448)
Q Consensus 1072 ~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~ 1151 (1448)
++++|. ++.++.+..+++ |+.|++++|..+..+. .+
T Consensus 116 ~l~~n~-i~~~~~~~~l~~----------------------------------L~~L~l~~n~~~~~~~-------~~-- 151 (347)
T 4fmz_A 116 YLNEDN-ISDISPLANLTK----------------------------------MYSLNLGANHNLSDLS-------PL-- 151 (347)
T ss_dssp ECTTSC-CCCCGGGTTCTT----------------------------------CCEEECTTCTTCCCCG-------GG--
T ss_pred ECcCCc-ccCchhhccCCc----------------------------------eeEEECCCCCCccccc-------ch--
Confidence 555543 222222222233 3444444333222100 01
Q ss_pred cccCCCCccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCC
Q 048507 1152 LEVGNLPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGA 1231 (1448)
Q Consensus 1152 l~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~ 1231 (1448)
..+ ++|++|++++|...+..+ +..+++|++|++++|.+.+.. . +..+++|+.|++++|.. ..++. +..++
T Consensus 152 ---~~l-~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~l~~n~l-~~~~~-~~~~~ 221 (347)
T 4fmz_A 152 ---SNM-TGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDIS-P-LASLTSLHYFTAYVNQI-TDITP-VANMT 221 (347)
T ss_dssp ---TTC-TTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCG-G-GGGCTTCCEEECCSSCC-CCCGG-GGGCT
T ss_pred ---hhC-CCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccc-c-ccCCCccceeecccCCC-CCCch-hhcCC
Confidence 111 256666666655443332 556666666666666544322 2 55566666666666533 22222 34455
Q ss_pred CccEEEecCccCccccccccCCCCcccceecccCCCccccCCCCCccceeeecccccccccccccCCccccCCCccEEEE
Q 048507 1232 KLTRLEISDCNRLEALPKGLHNLKSLQELRIGVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTI 1311 (1448)
Q Consensus 1232 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l 1311 (1448)
+|++|++++|...+ +|. +..+++|++|++ ++|... ....+..+++|++|++
T Consensus 222 ~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l---------------------~~n~l~------~~~~~~~l~~L~~L~l 272 (347)
T 4fmz_A 222 RLNSLKIGNNKITD-LSP-LANLSQLTWLEI---------------------GTNQIS------DINAVKDLTKLKMLNV 272 (347)
T ss_dssp TCCEEECCSSCCCC-CGG-GTTCTTCCEEEC---------------------CSSCCC------CCGGGTTCTTCCEEEC
T ss_pred cCCEEEccCCccCC-Ccc-hhcCCCCCEEEC---------------------CCCccC------CChhHhcCCCcCEEEc
Confidence 66666666655333 222 455555555555 444311 1124556677777777
Q ss_pred ecCCCcCccccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCCCCCCcccccceecc
Q 048507 1312 EGCDDDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFPEKGLPSSLLQLSIY 1391 (1448)
Q Consensus 1312 ~~c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~i~ 1391 (1448)
++| .+..++ .+..+++|+.|++++|......|..+..+++|+.|++++|+ ++.+++.+..++|++|+++
T Consensus 273 ~~n--~l~~~~--------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 273 GSN--QISDIS--------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFA 341 (347)
T ss_dssp CSS--CCCCCG--------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSS
T ss_pred cCC--ccCCCh--------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccceeehh
Confidence 764 233332 23556777777777765555556667778888888888866 5555555556778888888
Q ss_pred CCc
Q 048507 1392 RCP 1394 (1448)
Q Consensus 1392 ~c~ 1394 (1448)
+|+
T Consensus 342 ~N~ 344 (347)
T 4fmz_A 342 NQV 344 (347)
T ss_dssp CC-
T ss_pred hhc
Confidence 876
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=4.9e-21 Score=224.30 Aligned_cols=304 Identities=17% Similarity=0.206 Sum_probs=219.8
Q ss_pred ccccCCcceEeecCCCCccccchhhhhHHHhhhhhhccccceEEecccCCccccccccCccCCcceeeeccCCCCcccCC
Q 048507 956 LQDICSLKRLTIDSCPTLQSLVAEEEKDQQQQLCELSCRLEYLELNECKGLVKLPQSSLSLSSLREIEICGCSSLVSFPE 1035 (1448)
Q Consensus 956 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~~~~ 1035 (1448)
+..+++|+.|+++++. +..++. ...+++|++|++++|. +..++. +..+++|++|++++| .+..++.
T Consensus 40 ~~~l~~L~~L~l~~~~-i~~~~~----------~~~~~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~L~~n-~i~~~~~ 105 (347)
T 4fmz_A 40 QEELESITKLVVAGEK-VASIQG----------IEYLTNLEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTN-KITDISA 105 (347)
T ss_dssp HHHHTTCSEEECCSSC-CCCCTT----------GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCCGG
T ss_pred chhcccccEEEEeCCc-cccchh----------hhhcCCccEEEccCCc-cccchh-hhcCCcCCEEEccCC-cccCchH
Confidence 4578999999999864 444432 2236899999999975 455665 889999999999997 6777887
Q ss_pred CCCccccceeEecccCCCCccchhhccCCCCCcceEEEecCCCcccccCCcCCcCccEEEEecCCCCccccccccccccc
Q 048507 1036 VALPAKLRIISINSCDALKWLPEAWMCDFNSSLEILSIECCRSLTYIAGVQLPPSLKRLYIEFCDNIRTLTVEEGVQRSS 1115 (1448)
Q Consensus 1036 ~~~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~ 1115 (1448)
+..+++|++|++++|... .++. + ..+++|+.|++++|.....++....+++|++|++++|... .++
T Consensus 106 ~~~l~~L~~L~l~~n~i~-~~~~-~--~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~--------- 171 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNIS-DISP-L--ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK-DVT--------- 171 (347)
T ss_dssp GTTCTTCSEEECTTSCCC-CCGG-G--TTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCC-CCG---------
T ss_pred HcCCCcCCEEECcCCccc-Cchh-h--ccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcC-Cch---------
Confidence 888999999999998754 4444 2 3689999999999988877776677777777777776411 110
Q ss_pred CCccCCCCccceeeccCCCCcccccccCCCchhhhccccCCCCccccEEEEecCCCchhhhhhcccCCccceeeeccccc
Q 048507 1116 SSRRCTSSLLEELDINSCPSLTCIFSKNELPATLESLEVGNLPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCEN 1195 (1448)
Q Consensus 1116 ~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~ 1195 (1448)
. + ..+ ++|++|++++|...+..+ +..+++|+.|++++|.+
T Consensus 172 -------------------------------~-~-----~~l-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l 211 (347)
T 4fmz_A 172 -------------------------------P-I-----ANL-TDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQI 211 (347)
T ss_dssp -------------------------------G-G-----GGC-TTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred -------------------------------h-h-----ccC-CCCCEEEccCCccccccc--ccCCCccceeecccCCC
Confidence 0 1 111 388899998887655433 88999999999999887
Q ss_pred ccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEecCccCccccccccCCCCcccceec-ccCCCccccCCC
Q 048507 1196 LKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEISDCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGL 1274 (1448)
Q Consensus 1196 ~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~ 1274 (1448)
.+..+ +..+++|++|++++|.. +.++. +..+++|++|++++|...+ + ..+..+++|++|++ ++.+..+
T Consensus 212 ~~~~~--~~~~~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~----- 280 (347)
T 4fmz_A 212 TDITP--VANMTRLNSLKIGNNKI-TDLSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI----- 280 (347)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC-----
T ss_pred CCCch--hhcCCcCCEEEccCCcc-CCCcc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC-----
Confidence 76544 78899999999999754 55555 6778999999999987544 4 35666677776666 3333322
Q ss_pred CCccceeeecccccccccccccCCccccCCCccEEEEecCCCcCccccccccccCCCCCCCCCcCeEEEccCCCCccccc
Q 048507 1275 PTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSS 1354 (1448)
Q Consensus 1275 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~ 1354 (1448)
..+..+++|++|++++|. +...+. ..+..+++|+.|++++|+ +..++.
T Consensus 281 -----------------------~~~~~l~~L~~L~L~~n~--l~~~~~------~~l~~l~~L~~L~L~~n~-l~~~~~ 328 (347)
T 4fmz_A 281 -----------------------SVLNNLSQLNSLFLNNNQ--LGNEDM------EVIGGLTNLTTLFLSQNH-ITDIRP 328 (347)
T ss_dssp -----------------------GGGGGCTTCSEEECCSSC--CCGGGH------HHHHTCTTCSEEECCSSS-CCCCGG
T ss_pred -----------------------hhhcCCCCCCEEECcCCc--CCCcCh------hHhhccccCCEEEccCCc-cccccC
Confidence 235667777888887752 222221 124567788888888865 555544
Q ss_pred cccCCCCCCeEeecCCC
Q 048507 1355 SIVDLQNLTELRLLNCP 1371 (1448)
Q Consensus 1355 ~~~~l~~L~~L~l~~c~ 1371 (1448)
+..+++|++|++++|+
T Consensus 329 -~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 329 -LASLSKMDSADFANQV 344 (347)
T ss_dssp -GGGCTTCSEESSSCC-
T ss_pred -hhhhhccceeehhhhc
Confidence 7888999999999875
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=8.6e-21 Score=232.76 Aligned_cols=295 Identities=21% Similarity=0.223 Sum_probs=191.5
Q ss_pred ccccceEEecccCCccccccccCccCCcceeeeccCCCCccc-C-CCCCccccceeEecccCCCCccchhhccCCCCCcc
Q 048507 992 SCRLEYLELNECKGLVKLPQSSLSLSSLREIEICGCSSLVSF-P-EVALPAKLRIISINSCDALKWLPEAWMCDFNSSLE 1069 (1448)
Q Consensus 992 ~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~~-~-~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~L~ 1069 (1448)
+++++.|+|++|...+..+..+..+++|++|+|++| .+..+ | .+..+++|++|++++|. +..+|.... ..+++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~ 107 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVF-TGLSNLT 107 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSS-TTCTTCC
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCc-CCccCcccc-cCCCCCC
Confidence 457777777776655555567777788888888776 34433 3 24456777777777765 334443322 1467777
Q ss_pred eEEEecCCCccccc-CCcCCcCccEEEEecCCCCcccccccccccccCCccCCCCccceeeccCCCCcccccccCCCchh
Q 048507 1070 ILSIECCRSLTYIA-GVQLPPSLKRLYIEFCDNIRTLTVEEGVQRSSSSRRCTSSLLEELDINSCPSLTCIFSKNELPAT 1148 (1448)
Q Consensus 1070 ~L~l~~c~~l~~~~-~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~ 1148 (1448)
+|++++|......+ .+..+++|++|+++++.- ..+. +..
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l------------------------~~~~----------------~~~ 147 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDL------------------------VYIS----------------HRA 147 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEECCTTC------------------------CEEC----------------TTS
T ss_pred EEECCCCccccCChhHccccccCCEEECCCCcc------------------------ceeC----------------hhh
Confidence 77777664322111 223345555555555421 1000 000
Q ss_pred hhccccCCCCccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCC
Q 048507 1149 LESLEVGNLPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGL 1228 (1448)
Q Consensus 1149 l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~ 1228 (1448)
+..+ ++|++|++++|...+..+..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|+.++.+|....
T Consensus 148 -----~~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 221 (477)
T 2id5_A 148 -----FSGL-NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221 (477)
T ss_dssp -----STTC-TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT
T ss_pred -----ccCC-CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc
Confidence 1111 3888888888877776667788899999999999888877777888899999999999888888888777
Q ss_pred CCCCccEEEecCccCccccc-cccCCCCcccceec-ccCCCccccCCC--CCccceeeecccccccccccccCCccccCC
Q 048507 1229 PGAKLTRLEISDCNRLEALP-KGLHNLKSLQELRI-GVELPSLEEDGL--PTNLHSLGIRGNMEIWKSTIERGRGFHRFS 1304 (1448)
Q Consensus 1229 ~~~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l-~~~l~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~ 1304 (1448)
...+|++|++++|... .+| ..+.++++|+.|++ +|.+..++...+ .++|+.|++++|.. ....+..|..++
T Consensus 222 ~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~ 296 (477)
T 2id5_A 222 YGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL----AVVEPYAFRGLN 296 (477)
T ss_dssp TTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCC----SEECTTTBTTCT
T ss_pred cCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCcc----ceECHHHhcCcc
Confidence 7778999999998755 444 56788888888888 555665554332 46677777777642 244455667777
Q ss_pred CccEEEEecCCCcCccccccccccCCCCCCCCCcCeEEEccCCC
Q 048507 1305 SLQHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTTLWIYNFPN 1348 (1448)
Q Consensus 1305 ~L~~L~l~~c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~ 1348 (1448)
+|++|+|++| .+..+|... |..+++|+.|++++|+.
T Consensus 297 ~L~~L~L~~N--~l~~~~~~~------~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 297 YLRVLNVSGN--QLTTLEESV------FHSVGNLETLILDSNPL 332 (477)
T ss_dssp TCCEEECCSS--CCSCCCGGG------BSCGGGCCEEECCSSCE
T ss_pred cCCEEECCCC--cCceeCHhH------cCCCcccCEEEccCCCc
Confidence 7777777764 444444322 45566777777777553
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=1.1e-20 Score=231.71 Aligned_cols=310 Identities=20% Similarity=0.149 Sum_probs=217.1
Q ss_pred ceEEecccCCccccccccCccCCcceeeeccCCCCcccC--CCCCccccceeEecccCCCCccchhhccCCCCCcceEEE
Q 048507 996 EYLELNECKGLVKLPQSSLSLSSLREIEICGCSSLVSFP--EVALPAKLRIISINSCDALKWLPEAWMCDFNSSLEILSI 1073 (1448)
Q Consensus 996 ~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~~~--~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~L~~L~l 1073 (1448)
+.++.++ ..++.+|..+. ++++.|++++| .+..++ .+..+++|++|++++|...+..|..+. .+++|++|++
T Consensus 14 ~~v~c~~-~~l~~ip~~~~--~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L 87 (477)
T 2id5_A 14 RAVLCHR-KRFVAVPEGIP--TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN--NLFNLRTLGL 87 (477)
T ss_dssp TEEECCS-CCCSSCCSCCC--TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEEC
T ss_pred CEEEeCC-CCcCcCCCCCC--CCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhh--CCccCCEEEC
Confidence 3455544 45667776553 57888888886 455553 245578888888888765554455543 5777888888
Q ss_pred ecCCCcccccC--CcCCcCccEEEEecCCCCcccccccccccccCCccCCCCccceeeccCCCCcccccccCCCchhhhc
Q 048507 1074 ECCRSLTYIAG--VQLPPSLKRLYIEFCDNIRTLTVEEGVQRSSSSRRCTSSLLEELDINSCPSLTCIFSKNELPATLES 1151 (1448)
Q Consensus 1074 ~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~ 1151 (1448)
++|. ++.++. +..+++|++|++++|. -... .+..+
T Consensus 88 ~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~----------------------------------i~~~------~~~~~-- 124 (477)
T 2id5_A 88 RSNR-LKLIPLGVFTGLSNLTKLDISENK----------------------------------IVIL------LDYMF-- 124 (477)
T ss_dssp CSSC-CCSCCTTSSTTCTTCCEEECTTSC----------------------------------CCEE------CTTTT--
T ss_pred CCCc-CCccCcccccCCCCCCEEECCCCc----------------------------------cccC------ChhHc--
Confidence 7764 344432 2334555555555543 1100 01111
Q ss_pred cccCCCCccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCC
Q 048507 1152 LEVGNLPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGA 1231 (1448)
Q Consensus 1152 l~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~ 1231 (1448)
..+ ++|++|++++|...+..+..+.++++|+.|++++|.+.+..+..+.++++|+.|++++|......+..+..++
T Consensus 125 ---~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~ 200 (477)
T 2id5_A 125 ---QDL-YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200 (477)
T ss_dssp ---TTC-TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCT
T ss_pred ---ccc-ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCc
Confidence 112 3899999999988887788899999999999999887776666788999999999999876555555677789
Q ss_pred CccEEEecCccCccccccccCCCCcccceec-ccCCCccccC--CCCCccceeeecccccccccccccCCccccCCCccE
Q 048507 1232 KLTRLEISDCNRLEALPKGLHNLKSLQELRI-GVELPSLEED--GLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQH 1308 (1448)
Q Consensus 1232 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~ 1308 (1448)
+|++|++++|+..+.+|.......+|++|++ ++.+..++.. ..+++|+.|++++|.. ....+..+..+++|+.
T Consensus 201 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~ 276 (477)
T 2id5_A 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI----STIEGSMLHELLRLQE 276 (477)
T ss_dssp TCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCC----CEECTTSCTTCTTCCE
T ss_pred ccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcC----CccChhhccccccCCE
Confidence 9999999999999998888777779999999 6677766632 3457888888888853 2455567788888888
Q ss_pred EEEecCCCcCccccccccccCCCCCCCCCcCeEEEccCCCCccccc-cccCCCCCCeEeecCCC
Q 048507 1309 LTIEGCDDDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSS-SIVDLQNLTELRLLNCP 1371 (1448)
Q Consensus 1309 L~l~~c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~ 1371 (1448)
|++++| .+..++ +..+..+++|+.|+|++| .++.+|. .+..+++|+.|++++|+
T Consensus 277 L~L~~n--~l~~~~------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 277 IQLVGG--QLAVVE------PYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp EECCSS--CCSEEC------TTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred EECCCC--ccceEC------HHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 888885 333332 234677888888888885 5666654 45778888888888866
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=2.4e-20 Score=221.96 Aligned_cols=211 Identities=14% Similarity=0.055 Sum_probs=132.8
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEec
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEIS 1239 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~ 1239 (1448)
+|++|++++|...+..+..+..+++|++|++++|.+.+. .+..+++|+.|++++|. +..++ ..++|++|+++
T Consensus 142 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~-l~~~~----~~~~L~~L~l~ 213 (390)
T 3o6n_A 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL-LSTLA----IPIAVEELDAS 213 (390)
T ss_dssp TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC-CSEEE----CCSSCSEEECC
T ss_pred CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc-ccccC----CCCcceEEECC
Confidence 444455554444444444455555555555555544332 23345555555555542 22222 12355666665
Q ss_pred CccCccccccccCCCCcccceec-ccCCCccccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecCCCcC
Q 048507 1240 DCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDM 1318 (1448)
Q Consensus 1240 ~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~ 1318 (1448)
+|... .+|.. ..++|+.|++ ++.+...+.....++|+.|++++|.. ....+..+..+++|++|++++| .+
T Consensus 214 ~n~l~-~~~~~--~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~L~~n--~l 284 (390)
T 3o6n_A 214 HNSIN-VVRGP--VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL----EKIMYHPFVKMQRLERLYISNN--RL 284 (390)
T ss_dssp SSCCC-EEECC--CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC----CEEESGGGTTCSSCCEEECCSS--CC
T ss_pred CCeee-ecccc--ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcC----CCcChhHccccccCCEEECCCC--cC
Confidence 55432 23322 2345566666 44454444444456777777777742 2445667888999999999995 44
Q ss_pred ccccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCCCCCCcccccceeccCCchHH
Q 048507 1319 VSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFPEKGLPSSLLQLSIYRCPLIA 1397 (1448)
Q Consensus 1319 ~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~i~~c~~l~ 1397 (1448)
..+|. .+..+++|+.|++++| .+..+|..+..+++|+.|++++|+ ++.+|. ...++|+.|++++||.-+
T Consensus 285 ~~~~~-------~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~-~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 285 VALNL-------YGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLKL-STHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CEEEC-------SSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCCC-CTTCCCSEEECCSSCEEH
T ss_pred cccCc-------ccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-cceeCc-hhhccCCEEEcCCCCccc
Confidence 45543 3367899999999996 678899888999999999999976 777773 557899999999998543
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=6.9e-20 Score=218.01 Aligned_cols=305 Identities=18% Similarity=0.214 Sum_probs=210.4
Q ss_pred ccchhhhhhccccccceeeccCCccccccCCcceEeecCCCCccccchhhhhHHHhhhhhhccccceEEecccCCccccc
Q 048507 931 RLPKLEELILSTKEQTYIWKSHDGLLQDICSLKRLTIDSCPTLQSLVAEEEKDQQQQLCELSCRLEYLELNECKGLVKLP 1010 (1448)
Q Consensus 931 ~l~~L~~L~l~~~~~~~i~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~lp 1010 (1448)
.+++++.|.+.++. +...+...+..+++|++|++++|. ++.++...+ ..+++|++|++++|......|
T Consensus 43 ~l~~l~~l~l~~~~---l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~ 110 (390)
T 3o6n_A 43 TLNNQKIVTFKNST---MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAF--------AYAHTIQKLYMGFNAIRYLPP 110 (390)
T ss_dssp GGCCCSEEEEESCE---ESEECTHHHHHCCCCSEEECTTSC-CCEECTTTT--------TTCTTCCEEECCSSCCCCCCT
T ss_pred ccCCceEEEecCCc---hhhCChhHhcccccCcEEECCCCc-ccccChhhc--------cCCCCcCEEECCCCCCCcCCH
Confidence 45566666665544 334455667888999999998864 555554322 235789999999977666666
Q ss_pred cccCccCCcceeeeccCCCCcccCC--CCCccccceeEecccCCCCccchhhccCCCCCcceEEEecCCCcccccCCcCC
Q 048507 1011 QSSLSLSSLREIEICGCSSLVSFPE--VALPAKLRIISINSCDALKWLPEAWMCDFNSSLEILSIECCRSLTYIAGVQLP 1088 (1448)
Q Consensus 1011 ~~~~~l~~L~~L~L~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 1088 (1448)
..+..+++|++|++++| .+..+|. +..+++|++|++++|......|..+. .+++|++|++++|. ++.++ ...+
T Consensus 111 ~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n~-l~~~~-~~~l 185 (390)
T 3o6n_A 111 HVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ--ATTSLQNLQLSSNR-LTHVD-LSLI 185 (390)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTS--SCTTCCEEECCSSC-CSBCC-GGGC
T ss_pred HHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhcc--CCCCCCEEECCCCc-CCccc-cccc
Confidence 67888999999999987 5666765 34588999999998876554454443 58899999998875 33332 4556
Q ss_pred cCccEEEEecCCCCcccccccccccccCCccCCCCccceeeccCCCCcccccccCCCchhhhccccCCCCccccEEEEec
Q 048507 1089 PSLKRLYIEFCDNIRTLTVEEGVQRSSSSRRCTSSLLEELDINSCPSLTCIFSKNELPATLESLEVGNLPESLKSLRVWD 1168 (1448)
Q Consensus 1089 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~l~~~~~~~~L~~L~L~~ 1168 (1448)
++|+.|+++++. +..++ ..++|+.|+++++.--. + + ...+++|+.|++++
T Consensus 186 ~~L~~L~l~~n~-l~~~~--------------~~~~L~~L~l~~n~l~~-~-------------~-~~~~~~L~~L~l~~ 235 (390)
T 3o6n_A 186 PSLFHANVSYNL-LSTLA--------------IPIAVEELDASHNSINV-V-------------R-GPVNVELTILKLQH 235 (390)
T ss_dssp TTCSEEECCSSC-CSEEE--------------CCSSCSEEECCSSCCCE-E-------------E-CCCCSSCCEEECCS
T ss_pred cccceeeccccc-ccccC--------------CCCcceEEECCCCeeee-c-------------c-ccccccccEEECCC
Confidence 788888888763 22221 12358888888764321 0 1 12235888999988
Q ss_pred CCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEecCccCccccc
Q 048507 1169 CPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEISDCNRLEALP 1248 (1448)
Q Consensus 1169 ~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~p 1248 (1448)
|...+. ..+..+++|++|++++|.+.+..|..+..+++|++|++++| .++.+|..+..+++|++|++++|+ +..+|
T Consensus 236 n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~ 311 (390)
T 3o6n_A 236 NNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVE 311 (390)
T ss_dssp SCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCG
T ss_pred CCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecC
Confidence 877654 46888888999999988888877888888889999999886 456677777778889999998876 44677
Q ss_pred cccCCCCcccceec-ccCCCccccCCCCCccceeeecccc
Q 048507 1249 KGLHNLKSLQELRI-GVELPSLEEDGLPTNLHSLGIRGNM 1287 (1448)
Q Consensus 1249 ~~l~~l~~L~~L~l-~~~l~~~~~~~~~~~L~~L~l~~n~ 1287 (1448)
..+..+++|++|++ +|.+..++ ...+++|+.|++++|+
T Consensus 312 ~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 312 RNQPQFDRLENLYLDHNSIVTLK-LSTHHTLKNLTLSHND 350 (390)
T ss_dssp GGHHHHTTCSEEECCSSCCCCCC-CCTTCCCSEEECCSSC
T ss_pred ccccccCcCCEEECCCCccceeC-chhhccCCEEEcCCCC
Confidence 77777778888877 55555443 2233445555555543
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=4.5e-20 Score=231.98 Aligned_cols=211 Identities=14% Similarity=0.068 Sum_probs=133.6
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEec
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEIS 1239 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~ 1239 (1448)
+|++|++++|...+..|..++++++|++|++++|.+.+. .+..+++|+.|++++|. +..++ ..++|+.|+++
T Consensus 148 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~-l~~l~----~~~~L~~L~ls 219 (597)
T 3oja_B 148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL-LSTLA----IPIAVEELDAS 219 (597)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSC-CSEEE----CCTTCSEEECC
T ss_pred CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCc-ccccc----CCchhheeecc
Confidence 455555555555444455555556666666665554432 13345556666666543 22222 12356666666
Q ss_pred CccCccccccccCCCCcccceec-ccCCCccccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecCCCcC
Q 048507 1240 DCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDM 1318 (1448)
Q Consensus 1240 ~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~ 1318 (1448)
+|.. ..+|..+ .++|+.|++ ++.+...+....+++|+.|++++|.. ....+..|..+++|++|+|++| .+
T Consensus 220 ~n~l-~~~~~~~--~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l----~~~~~~~~~~l~~L~~L~Ls~N--~l 290 (597)
T 3oja_B 220 HNSI-NVVRGPV--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL----EKIMYHPFVKMQRLERLYISNN--RL 290 (597)
T ss_dssp SSCC-CEEECSC--CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC----CEEESGGGTTCSSCCEEECTTS--CC
T ss_pred CCcc-ccccccc--CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCcc----CCCCHHHhcCccCCCEEECCCC--CC
Confidence 6543 2233222 245666666 44454444444456777777777743 2455677888999999999985 44
Q ss_pred ccccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCCCCCCcccccceeccCCchHH
Q 048507 1319 VSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFPEKGLPSSLLQLSIYRCPLIA 1397 (1448)
Q Consensus 1319 ~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~i~~c~~l~ 1397 (1448)
..+|. .+..+++|+.|+|++| .+..+|.++..+++|+.|++++|+ +..+|. +..++|+.|++++||.-+
T Consensus 291 ~~l~~-------~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 291 VALNL-------YGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLKL-STHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CEEEC-------SSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCCC-CTTCCCSEEECCSSCEEH
T ss_pred CCCCc-------ccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCC-CCCcCh-hhcCCCCEEEeeCCCCCC
Confidence 44543 3466889999999996 577899889999999999999976 677763 456799999999998543
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=6.7e-20 Score=230.46 Aligned_cols=305 Identities=18% Similarity=0.211 Sum_probs=220.3
Q ss_pred ccchhhhhhccccccceeeccCCccccccCCcceEeecCCCCccccchhhhhHHHhhhhhhccccceEEecccCCccccc
Q 048507 931 RLPKLEELILSTKEQTYIWKSHDGLLQDICSLKRLTIDSCPTLQSLVAEEEKDQQQQLCELSCRLEYLELNECKGLVKLP 1010 (1448)
Q Consensus 931 ~l~~L~~L~l~~~~~~~i~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~lp 1010 (1448)
.+++++.+.+.++ .+...++..+..+++|+.|++++|. ++.+++..+ ..+++|++|+|++|...+..|
T Consensus 49 ~l~~l~~l~l~~~---~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~ 116 (597)
T 3oja_B 49 TLNNQKIVTFKNS---TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAF--------AYAHTIQKLYMGFNAIRYLPP 116 (597)
T ss_dssp GGCCCSEEEESSC---EESEECTHHHHHCCCCSEEECTTSC-CCEECTTTT--------TTCTTCCEEECCSSCCCCCCT
T ss_pred cCCCceEEEeeCC---CCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHh--------cCCCCCCEEECCCCcCCCCCH
Confidence 3444455544443 4444566777889999999999864 555554322 235789999999987666666
Q ss_pred cccCccCCcceeeeccCCCCcccCC--CCCccccceeEecccCCCCccchhhccCCCCCcceEEEecCCCcccccCCcCC
Q 048507 1011 QSSLSLSSLREIEICGCSSLVSFPE--VALPAKLRIISINSCDALKWLPEAWMCDFNSSLEILSIECCRSLTYIAGVQLP 1088 (1448)
Q Consensus 1011 ~~~~~l~~L~~L~L~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 1088 (1448)
..+..+++|++|++++| .+..+|. +..+++|++|++++|...+..|..+. .+++|+.|++++|. ++.++ ...+
T Consensus 117 ~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~-l~~~~-~~~l 191 (597)
T 3oja_B 117 HVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ--ATTSLQNLQLSSNR-LTHVD-LSLI 191 (597)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT--TCTTCCEEECTTSC-CSBCC-GGGC
T ss_pred HHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhh--cCCcCcEEECcCCC-CCCcC-hhhh
Confidence 67789999999999997 5666765 35688999999999876665555554 58899999999875 44443 4556
Q ss_pred cCccEEEEecCCCCcccccccccccccCCccCCCCccceeeccCCCCcccccccCCCchhhhccccCCCCccccEEEEec
Q 048507 1089 PSLKRLYIEFCDNIRTLTVEEGVQRSSSSRRCTSSLLEELDINSCPSLTCIFSKNELPATLESLEVGNLPESLKSLRVWD 1168 (1448)
Q Consensus 1089 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~l~~~~~~~~L~~L~L~~ 1168 (1448)
++|+.|++++|. +..++ ..++|+.|+++++..-. + + ...+++|+.|++++
T Consensus 192 ~~L~~L~l~~n~-l~~l~--------------~~~~L~~L~ls~n~l~~-~-------------~-~~~~~~L~~L~L~~ 241 (597)
T 3oja_B 192 PSLFHANVSYNL-LSTLA--------------IPIAVEELDASHNSINV-V-------------R-GPVNVELTILKLQH 241 (597)
T ss_dssp TTCSEEECCSSC-CSEEE--------------CCTTCSEEECCSSCCCE-E-------------E-CSCCSCCCEEECCS
T ss_pred hhhhhhhcccCc-ccccc--------------CCchhheeeccCCcccc-c-------------c-cccCCCCCEEECCC
Confidence 789999888873 22221 12458888888864321 1 1 12335899999999
Q ss_pred CCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEecCccCccccc
Q 048507 1169 CPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEISDCNRLEALP 1248 (1448)
Q Consensus 1169 ~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~p 1248 (1448)
|...+. ..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|. ++.+|..+..+++|+.|+|++|.+. .+|
T Consensus 242 n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~ 317 (597)
T 3oja_B 242 NNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVE 317 (597)
T ss_dssp SCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSCCC-CCG
T ss_pred CCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCCCC-ccC
Confidence 987763 568899999999999999888888899999999999999864 5667877777899999999998754 678
Q ss_pred cccCCCCcccceec-ccCCCccccCCCCCccceeeecccc
Q 048507 1249 KGLHNLKSLQELRI-GVELPSLEEDGLPTNLHSLGIRGNM 1287 (1448)
Q Consensus 1249 ~~l~~l~~L~~L~l-~~~l~~~~~~~~~~~L~~L~l~~n~ 1287 (1448)
..+..+++|++|++ +|.+..++ ...+++|+.|++++|+
T Consensus 318 ~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 318 RNQPQFDRLENLYLDHNSIVTLK-LSTHHTLKNLTLSHND 356 (597)
T ss_dssp GGHHHHTTCSEEECCSSCCCCCC-CCTTCCCSEEECCSSC
T ss_pred cccccCCCCCEEECCCCCCCCcC-hhhcCCCCEEEeeCCC
Confidence 88888888888888 55555543 2333456666666654
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=1e-20 Score=216.54 Aligned_cols=225 Identities=14% Similarity=0.087 Sum_probs=169.1
Q ss_pred cccEEEEec-CCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEe
Q 048507 1160 SLKSLRVWD-CPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEI 1238 (1448)
Q Consensus 1160 ~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l 1238 (1448)
+|++|++++ |...+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|...+.+|..+..+++|++|++
T Consensus 77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 156 (313)
T 1ogq_A 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156 (313)
T ss_dssp TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence 777777774 6666677777777888888888877777777777777778888888777665567777777777888888
Q ss_pred cCccCccccccccCCCC-cccceec-ccCCCc-cccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecCC
Q 048507 1239 SDCNRLEALPKGLHNLK-SLQELRI-GVELPS-LEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCD 1315 (1448)
Q Consensus 1239 ~~~~~~~~~p~~l~~l~-~L~~L~l-~~~l~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 1315 (1448)
++|...+.+|..+..++ +|++|++ .+.+.. ++..-...+|+.|++++|.. ....+..+..+++|++|++++|.
T Consensus 157 ~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l----~~~~~~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML----EGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp CSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEE----EECCGGGCCTTSCCSEEECCSSE
T ss_pred cCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcc----cCcCCHHHhcCCCCCEEECCCCc
Confidence 87777767777777776 7777777 444442 22111112388888888843 34566788899999999999962
Q ss_pred CcCccccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCCCCCCcccccceeccCCch
Q 048507 1316 DDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFPEKGLPSSLLQLSIYRCPL 1395 (1448)
Q Consensus 1316 ~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~i~~c~~ 1395 (1448)
....+| .+..+++|+.|++++|...+.+|.++..+++|+.|++++|+..+.+|..+..++|+.|++++||.
T Consensus 233 -l~~~~~--------~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 233 -LAFDLG--------KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp -ECCBGG--------GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSE
T ss_pred -eeeecC--------cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCC
Confidence 222222 24678999999999987666899999999999999999987666899887789999999999986
Q ss_pred HH
Q 048507 1396 IA 1397 (1448)
Q Consensus 1396 l~ 1397 (1448)
++
T Consensus 304 lc 305 (313)
T 1ogq_A 304 LC 305 (313)
T ss_dssp EE
T ss_pred cc
Confidence 65
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=1.8e-18 Score=200.42 Aligned_cols=201 Identities=14% Similarity=0.166 Sum_probs=124.3
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeeccccccc--ccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEE
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLK--ILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLE 1237 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~--~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~ 1237 (1448)
+|++|++++|...+..+..+.++++|++|++++|.+.. ..+..+.++++|++|++++|. ++.+|.... ++|++|+
T Consensus 122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L~ 198 (330)
T 1xku_A 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTELH 198 (330)
T ss_dssp TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCSEEE
T ss_pred cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcccc--ccCCEEE
Confidence 67777777777766666778888888888888887643 566777888888888888864 556776554 6888888
Q ss_pred ecCccCccccccccCCCCcccceec-ccCCCccccCC--CCCccceeeecccccccccccccCCccccCCCccEEEEecC
Q 048507 1238 ISDCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDG--LPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGC 1314 (1448)
Q Consensus 1238 l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c 1314 (1448)
+++|...+..|..+..+++|++|++ ++.+..++... ..++|+.|++++|... ..+..+..+++|++|++++|
T Consensus 199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-----~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-----KVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-----SCCTTTTTCSSCCEEECCSS
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-----cCChhhccCCCcCEEECCCC
Confidence 8888876666777888888888888 55555544322 2355666666666321 23334556666666666663
Q ss_pred CCcCccccccccccCCCCCCCCCcCeEEEccCCCCc--cccccccCCCCCCeEeecCC
Q 048507 1315 DDDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLE--RLSSSIVDLQNLTELRLLNC 1370 (1448)
Q Consensus 1315 ~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~lp~~~~~l~~L~~L~l~~c 1370 (1448)
.+..+|..............+|+.|++++|+... .-|..+..+.+|+.+++++|
T Consensus 274 --~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 274 --NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp --CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred --cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 3444443221111111223556666666654321 23345555666666666554
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=1.3e-19 Score=208.44 Aligned_cols=218 Identities=23% Similarity=0.331 Sum_probs=158.0
Q ss_pred ccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEe
Q 048507 1159 ESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEI 1238 (1448)
Q Consensus 1159 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l 1238 (1448)
+.++.|++++|... .+|..+..+++|++|++++|.+. .+|..+.++++|++|+|++|.. ..+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCC-CCCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcc-ccCcHHHhcCcCCCEEEC
Confidence 36777777776654 66666777778888888777766 6777777777888888877643 467777777777888888
Q ss_pred cCccCccccccccCC---------CCcccceec-ccCCCccccC-CCCCccceeeecccccccccccccCCccccCCCcc
Q 048507 1239 SDCNRLEALPKGLHN---------LKSLQELRI-GVELPSLEED-GLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQ 1307 (1448)
Q Consensus 1239 ~~~~~~~~~p~~l~~---------l~~L~~L~l-~~~l~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~ 1307 (1448)
++|+..+.+|..+.. +++|++|++ ++.+..++.. ..+++|+.|++++|... ..+..+..+++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-----~l~~~l~~l~~L~ 232 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-----ALGPAIHHLPKLE 232 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-----CCCGGGGGCTTCC
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-----cCchhhccCCCCC
Confidence 887777777766544 777777777 5566655432 33467777888777532 2333577888899
Q ss_pred EEEEecCCCcCccccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCCCC-CCccccc
Q 048507 1308 HLTIEGCDDDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFPEK-GLPSSLL 1386 (1448)
Q Consensus 1308 ~L~l~~c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~ 1386 (1448)
+|++++| +....+| ..+..+++|+.|++++|+.++.+|.++.++++|++|++++|+.++.+|.. +.+++|+
T Consensus 233 ~L~Ls~n-~~~~~~p-------~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 233 ELDLRGC-TALRNYP-------PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp EEECTTC-TTCCBCC-------CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred EEECcCC-cchhhhH-------HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 9999886 3444444 34577888999999988888888888888899999999998888888874 3456666
Q ss_pred ceeccC
Q 048507 1387 QLSIYR 1392 (1448)
Q Consensus 1387 ~L~i~~ 1392 (1448)
.+++..
T Consensus 305 ~l~l~~ 310 (328)
T 4fcg_A 305 IILVPP 310 (328)
T ss_dssp EEECCG
T ss_pred EEeCCH
Confidence 666654
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=1e-18 Score=202.55 Aligned_cols=201 Identities=15% Similarity=0.132 Sum_probs=111.1
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccccc--cccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEE
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENL--KILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLE 1237 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~--~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~ 1237 (1448)
+|++|++++|...+..+..+.++++|++|++++|.+. +..|..+..+ +|+.|++++|. ++.+|..+. ++|++|+
T Consensus 124 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L~ 199 (332)
T 2ft3_A 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNELH 199 (332)
T ss_dssp TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCCB
T ss_pred cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--CCCCEEE
Confidence 5566666665555444445666667777777666653 2445555555 67777777653 444665443 5677777
Q ss_pred ecCccCccccccccCCCCcccceec-ccCCCccccC--CCCCccceeeecccccccccccccCCccccCCCccEEEEecC
Q 048507 1238 ISDCNRLEALPKGLHNLKSLQELRI-GVELPSLEED--GLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGC 1314 (1448)
Q Consensus 1238 l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c 1314 (1448)
+++|...+..|..+..+++|++|++ +|.+..++.. ..+++|+.|++++|... ..+..+..+++|++|++++|
T Consensus 200 l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-----~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-----RVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp CCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-----BCCTTGGGCTTCCEEECCSS
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-----ecChhhhcCccCCEEECCCC
Confidence 7776655555566677777777777 4555544432 22355566666655321 23334666777777777763
Q ss_pred CCcCccccccccccCCCCCCCCCcCeEEEccCCCC--ccccccccCCCCCCeEeecCCC
Q 048507 1315 DDDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNL--ERLSSSIVDLQNLTELRLLNCP 1371 (1448)
Q Consensus 1315 ~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l--~~lp~~~~~l~~L~~L~l~~c~ 1371 (1448)
.+..+|.....-........+|+.|++++|+.. +..|..+..+++|+.|++++|+
T Consensus 275 --~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 275 --NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp --CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred --CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 344444322100000011456677777776543 3445556667777777777654
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=7.8e-19 Score=202.04 Aligned_cols=229 Identities=22% Similarity=0.321 Sum_probs=168.6
Q ss_pred ccccceEEecccCCccccccccCccCCcceeeeccCCCCcccCC-CCCccccceeEecccCCCCccchhhccCCCCCcce
Q 048507 992 SCRLEYLELNECKGLVKLPQSSLSLSSLREIEICGCSSLVSFPE-VALPAKLRIISINSCDALKWLPEAWMCDFNSSLEI 1070 (1448)
Q Consensus 992 ~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~L~~ 1070 (1448)
.++++.|++++|. +..+|..+..+++|++|++++|. +..+|. +..+++|++|++++|... .+|..+. .+++|++
T Consensus 80 ~~~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~--~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPLR-ALPASIA--SLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGG--GCTTCCE
T ss_pred ccceeEEEccCCC-chhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCccc-cCcHHHh--cCcCCCE
Confidence 3678888888855 45777777788888888888874 446664 556788888888887654 6776654 4778888
Q ss_pred EEEecCCCcccccCCcCCcCccEEEEecCCCCcccccccccccccCCccCCCCccceeeccCCCCcccccccCCCchhhh
Q 048507 1071 LSIECCRSLTYIAGVQLPPSLKRLYIEFCDNIRTLTVEEGVQRSSSSRRCTSSLLEELDINSCPSLTCIFSKNELPATLE 1150 (1448)
Q Consensus 1071 L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~ 1150 (1448)
|++++|...+.++..- ....+.+ ....+++|++|++++|. ++ .+|..+.
T Consensus 155 L~L~~n~~~~~~p~~~-----~~~~~~~-------------------~~~~l~~L~~L~L~~n~-l~------~lp~~l~ 203 (328)
T 4fcg_A 155 LSIRACPELTELPEPL-----ASTDASG-------------------EHQGLVNLQSLRLEWTG-IR------SLPASIA 203 (328)
T ss_dssp EEEEEETTCCCCCSCS-----EEEC-CC-------------------CEEESTTCCEEEEEEEC-CC------CCCGGGG
T ss_pred EECCCCCCccccChhH-----hhccchh-------------------hhccCCCCCEEECcCCC-cC------cchHhhc
Confidence 8888877666554311 1100000 00112334444444431 11 2333333
Q ss_pred ccccCCCCccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCC
Q 048507 1151 SLEVGNLPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPG 1230 (1448)
Q Consensus 1151 ~l~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~ 1230 (1448)
.+ ++|++|++++|...+ +|..++.+++|++|++++|+..+.+|..+..+++|+.|+|++|+..+.+|..+..+
T Consensus 204 ~l------~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l 276 (328)
T 4fcg_A 204 NL------QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276 (328)
T ss_dssp GC------TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGC
T ss_pred CC------CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcC
Confidence 33 389999999988764 66679999999999999999999999999999999999999999999999999899
Q ss_pred CCccEEEecCccCccccccccCCCCcccceecc
Q 048507 1231 AKLTRLEISDCNRLEALPKGLHNLKSLQELRIG 1263 (1448)
Q Consensus 1231 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~ 1263 (1448)
++|++|+|++|+..+.+|..+.++++|+.+++.
T Consensus 277 ~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp TTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 999999999999999999999999999999883
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=2.9e-19 Score=204.55 Aligned_cols=247 Identities=16% Similarity=0.162 Sum_probs=158.3
Q ss_pred ccceEEecccCCcc--ccccccCccCCcceeeecc-CCCCcccCC-CCCccccceeEecccCCCCccchhhccCCCCCcc
Q 048507 994 RLEYLELNECKGLV--KLPQSSLSLSSLREIEICG-CSSLVSFPE-VALPAKLRIISINSCDALKWLPEAWMCDFNSSLE 1069 (1448)
Q Consensus 994 ~L~~L~L~~~~~l~--~lp~~~~~l~~L~~L~L~~-c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~L~ 1069 (1448)
+++.|++++|...+ .+|..+..+++|++|++++ |.....+|. +..+++|++|++++|...+.+|..+. .+++|+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~ 128 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS--QIKTLV 128 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG--GCTTCC
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh--CCCCCC
Confidence 56666776666555 6666777777777777774 433334443 44566677777777666556665554 366677
Q ss_pred eEEEecCCCccccc-CCcCCcCccEEEEecCCCCcccccccccccccCCccCCCCccceeeccCCCCcccccccCCCchh
Q 048507 1070 ILSIECCRSLTYIA-GVQLPPSLKRLYIEFCDNIRTLTVEEGVQRSSSSRRCTSSLLEELDINSCPSLTCIFSKNELPAT 1148 (1448)
Q Consensus 1070 ~L~l~~c~~l~~~~-~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~ 1148 (1448)
+|++++|.....++ .+..+++|++|++++|.-... +|..
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~----------------------------------------~p~~ 168 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA----------------------------------------IPDS 168 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE----------------------------------------CCGG
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCc----------------------------------------CCHH
Confidence 77766654322222 122334444444444421111 1111
Q ss_pred hhccccCCCCccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCC
Q 048507 1149 LESLEVGNLPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGL 1228 (1448)
Q Consensus 1149 l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~ 1228 (1448)
+ ..++++|++|++++|...+.+|..+..++ |++|++++|.+.+.+|..+..+++|+.|++++|...+.+|. +.
T Consensus 169 l-----~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~ 241 (313)
T 1ogq_A 169 Y-----GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VG 241 (313)
T ss_dssp G-----GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CC
T ss_pred H-----hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-cc
Confidence 1 12224778888888877777788888877 88888888888877888888888888888888765545554 56
Q ss_pred CCCCccEEEecCccCccccccccCCCCcccceec-ccCCC-ccccCCCCCccceeeecccccc
Q 048507 1229 PGAKLTRLEISDCNRLEALPKGLHNLKSLQELRI-GVELP-SLEEDGLPTNLHSLGIRGNMEI 1289 (1448)
Q Consensus 1229 ~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~-~~~~~~~~~~L~~L~l~~n~~~ 1289 (1448)
.+++|++|++++|.+.+.+|..+..+++|++|++ .|.+. .+|.....++|+.|++++|+.+
T Consensus 242 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence 6788888888888877788888888888888888 45444 3444444566777777777643
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=4.8e-18 Score=196.92 Aligned_cols=216 Identities=19% Similarity=0.206 Sum_probs=167.2
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCC-CCCCCCCccEEEe
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPK-GGLPGAKLTRLEI 1238 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~-~~~~~~~L~~L~l 1238 (1448)
+|++|++++|...+..|..+.++++|++|++++|.+. .+|..+. ++|++|++++|.. +.+|. .+..+++|++|++
T Consensus 79 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l 154 (332)
T 2ft3_A 79 HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRI-RKVPKGVFSGLRNMNCIEM 154 (332)
T ss_dssp TCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCC-CCCCSGGGSSCSSCCEEEC
T ss_pred CCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCcc-CccCHhHhCCCccCCEEEC
Confidence 7888888888877777888899999999999987765 5665554 7899999998654 45554 3667889999999
Q ss_pred cCccCc--cccccccCCCCcccceec-ccCCCccccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecCC
Q 048507 1239 SDCNRL--EALPKGLHNLKSLQELRI-GVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCD 1315 (1448)
Q Consensus 1239 ~~~~~~--~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 1315 (1448)
++|... +..|..+..+ +|++|++ .+.+..++.. ++++|+.|++++|.. ....+..+..+++|++|++++|
T Consensus 155 ~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~-~~~~L~~L~l~~n~i----~~~~~~~l~~l~~L~~L~L~~N- 227 (332)
T 2ft3_A 155 GGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKD-LPETLNELHLDHNKI----QAIELEDLLRYSKLYRLGLGHN- 227 (332)
T ss_dssp CSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSS-SCSSCSCCBCCSSCC----CCCCTTSSTTCTTCSCCBCCSS-
T ss_pred CCCccccCCCCcccccCC-ccCEEECcCCCCCccCcc-ccCCCCEEECCCCcC----CccCHHHhcCCCCCCEEECCCC-
Confidence 998764 3667777777 8999999 6677776653 447899999999853 3455567889999999999985
Q ss_pred CcCccccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCCCCCC--------cccccc
Q 048507 1316 DDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFPEKGL--------PSSLLQ 1387 (1448)
Q Consensus 1316 ~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~--------~~~L~~ 1387 (1448)
.+..++. ..+..+++|+.|++++| .+..+|.++..+++|+.|++++|+ ++.+|...+ .++|+.
T Consensus 228 -~l~~~~~------~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~ 298 (332)
T 2ft3_A 228 -QIRMIEN------GSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNG 298 (332)
T ss_dssp -CCCCCCT------TGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSE
T ss_pred -cCCcCCh------hHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccc
Confidence 4444442 23567889999999995 677999999999999999999954 888876533 356889
Q ss_pred eeccCCch
Q 048507 1388 LSIYRCPL 1395 (1448)
Q Consensus 1388 L~i~~c~~ 1395 (1448)
|++++||.
T Consensus 299 L~l~~N~~ 306 (332)
T 2ft3_A 299 ISLFNNPV 306 (332)
T ss_dssp EECCSSSS
T ss_pred eEeecCcc
Confidence 99999984
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=4.6e-18 Score=197.06 Aligned_cols=239 Identities=17% Similarity=0.151 Sum_probs=109.2
Q ss_pred CcceEeecCCCCccccchhhhhHHHhhhhhhccccceEEecccCCccccccccCccCCcceeeeccCCCCccc-CC-CCC
Q 048507 961 SLKRLTIDSCPTLQSLVAEEEKDQQQQLCELSCRLEYLELNECKGLVKLPQSSLSLSSLREIEICGCSSLVSF-PE-VAL 1038 (1448)
Q Consensus 961 ~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~~-~~-~~~ 1038 (1448)
+++.++++++ .++.+|.. .++.++.|++++|......+..+..+++|++|++++|. +..+ |. +..
T Consensus 32 ~l~~l~~~~~-~l~~lp~~-----------~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 98 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPKD-----------LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAP 98 (330)
T ss_dssp ETTEEECTTS-CCCSCCCS-----------CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTT
T ss_pred CCeEEEecCC-CccccCcc-----------CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcC
Confidence 5566666553 33444432 23566667776655433333356666677777776653 3333 32 344
Q ss_pred ccccceeEecccCCCCccchhhccCCCCCcceEEEecCCCcccccC--CcCCcCccEEEEecCCCCcccccccccccccC
Q 048507 1039 PAKLRIISINSCDALKWLPEAWMCDFNSSLEILSIECCRSLTYIAG--VQLPPSLKRLYIEFCDNIRTLTVEEGVQRSSS 1116 (1448)
Q Consensus 1039 ~~~L~~L~l~~~~~l~~lp~~~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 1116 (1448)
+++|++|++++|. ++.+|..+ .++|++|++++|. ++.++. +..+++|+.|++++|..-. .. ...
T Consensus 99 l~~L~~L~Ls~n~-l~~l~~~~----~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~-------~~~ 164 (330)
T 1xku_A 99 LVKLERLYLSKNQ-LKELPEKM----PKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKS-SG-------IEN 164 (330)
T ss_dssp CTTCCEEECCSSC-CSBCCSSC----CTTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCG-GG-------BCT
T ss_pred CCCCCEEECCCCc-CCccChhh----cccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCc-cC-------cCh
Confidence 5666666666654 33444432 2556666666553 222221 2334455555555543110 00 000
Q ss_pred CccCCCCccceeeccCCCCcccccccCCCchhhhccccCCCCccccEEEEecCCCchhhhhhcccCCccceeeecccccc
Q 048507 1117 SRRCTSSLLEELDINSCPSLTCIFSKNELPATLESLEVGNLPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENL 1196 (1448)
Q Consensus 1117 ~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~ 1196 (1448)
.....+++|++|+++++.- +. +|. .++++|++|++++|...+..+..+..+++|++|++++|.+.
T Consensus 165 ~~~~~l~~L~~L~l~~n~l-~~------l~~--------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 229 (330)
T 1xku_A 165 GAFQGMKKLSYIRIADTNI-TT------IPQ--------GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229 (330)
T ss_dssp TGGGGCTTCCEEECCSSCC-CS------CCS--------SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred hhccCCCCcCEEECCCCcc-cc------CCc--------cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc
Confidence 0111233344444444321 10 110 01124555555555444444444555555555555554444
Q ss_pred cccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEecCcc
Q 048507 1197 KILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEISDCN 1242 (1448)
Q Consensus 1197 ~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~~~~ 1242 (1448)
+..+..+..+++|++|++++| .++.+|..+..+++|++|++++|+
T Consensus 230 ~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 230 AVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp EECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC
T ss_pred eeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc
Confidence 444444444555555555543 233444444444445555555444
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.76 E-value=1.3e-19 Score=229.42 Aligned_cols=102 Identities=16% Similarity=0.127 Sum_probs=46.1
Q ss_pred cceEEecccCCcc--ccccccCccCCcceeeeccCCCCcc----cCC-CCCccccceeEecccCCC----CccchhhccC
Q 048507 995 LEYLELNECKGLV--KLPQSSLSLSSLREIEICGCSSLVS----FPE-VALPAKLRIISINSCDAL----KWLPEAWMCD 1063 (1448)
Q Consensus 995 L~~L~L~~~~~l~--~lp~~~~~l~~L~~L~L~~c~~l~~----~~~-~~~~~~L~~L~l~~~~~l----~~lp~~~~~~ 1063 (1448)
|++|++++|.... .++.....+++|++|+|++|..... ++. ...+++|++|++++|... ..++..+.
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~-- 217 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR-- 217 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH--
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh--
Confidence 6666666665322 1222233556666666666532111 110 112456666666665543 12222221
Q ss_pred CCCCcceEEEecCCCcccccCCcCCcCccEEEEec
Q 048507 1064 FNSSLEILSIECCRSLTYIAGVQLPPSLKRLYIEF 1098 (1448)
Q Consensus 1064 ~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~ 1098 (1448)
.+++|+.|++++|....-......+++|++|+++.
T Consensus 218 ~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECB
T ss_pred hCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccc
Confidence 35666666666653222111223345555665554
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=5.2e-17 Score=200.86 Aligned_cols=81 Identities=19% Similarity=0.212 Sum_probs=70.2
Q ss_pred ccCceeEEEeCCCCccccCccccCCccceEEeccCccccccChhhhccccccEEeccCCchhhcccccccccCCCCeeee
Q 048507 593 KLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 672 (1448)
Q Consensus 593 ~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~~L~~L~l 672 (1448)
....+++|++++|.++.+|..+. ++|++|+|++|.|+.+|. .+++|++|+|++| .+..+|. .+++|++|++
T Consensus 38 ~~~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 38 LNNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp HHHCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEE
T ss_pred cCCCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEEC
Confidence 34569999999999999998876 899999999999999998 6789999999997 4667876 7799999999
Q ss_pred cCCCCcccccc
Q 048507 673 SNTKSLEEMPV 683 (1448)
Q Consensus 673 ~~~~~l~~~p~ 683 (1448)
++|. +..+|.
T Consensus 109 s~N~-l~~l~~ 118 (622)
T 3g06_A 109 FSNP-LTHLPA 118 (622)
T ss_dssp CSCC-CCCCCC
T ss_pred cCCc-CCCCCC
Confidence 9998 677765
No 55
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=1.6e-19 Score=220.78 Aligned_cols=82 Identities=11% Similarity=0.099 Sum_probs=57.7
Q ss_pred CceeEEEeCCCCccccC--ccccCCccceEEeccCcccc-----ccChhhhccccccEEeccCCchhhcccccc-cccC-
Q 048507 595 QRLRVFSLRGYRIDELP--DSIGDLRYFRYLNLSGTEIR-----TLPESVNKLYNLHSLLLEDCDRLKKLCADM-GNLA- 665 (1448)
Q Consensus 595 ~~L~~L~L~~n~i~~lp--~~i~~l~~L~~L~Ls~n~i~-----~lp~~i~~L~~L~~L~L~~n~~~~~lp~~i-~~L~- 665 (1448)
++|+.|+|++|.++..+ ..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|......+..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 56788888888876543 33677788888888888877 456777778888888888875443333333 3344
Q ss_pred ---CCCeeeecCCC
Q 048507 666 ---KLHHLKNSNTK 676 (1448)
Q Consensus 666 ---~L~~L~l~~~~ 676 (1448)
+|++|++++|.
T Consensus 83 ~~~~L~~L~L~~n~ 96 (461)
T 1z7x_W 83 PSCKIQKLSLQNCC 96 (461)
T ss_dssp TTCCCCEEECTTSC
T ss_pred CCCceeEEEccCCC
Confidence 68888888877
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=7.1e-17 Score=195.01 Aligned_cols=198 Identities=19% Similarity=0.200 Sum_probs=135.4
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCC-CCCCCCCccEEEe
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPK-GGLPGAKLTRLEI 1238 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~-~~~~~~~L~~L~l 1238 (1448)
+|++|+|++|...+..+..|.++++|++|+|++|.+....+..|..+++|++|+|++|.. +.+|. .+..+++|++|++
T Consensus 89 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~l 167 (440)
T 3zyj_A 89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDL 167 (440)
T ss_dssp SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCC-CEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcc-cccCHHHhhhCcccCEeCC
Confidence 677777777766666666777777777777777766655555677777777777777653 34443 4556777777777
Q ss_pred cCccCcccccc-ccCCCCcccceec-ccCCCccccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecCCC
Q 048507 1239 SDCNRLEALPK-GLHNLKSLQELRI-GVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDD 1316 (1448)
Q Consensus 1239 ~~~~~~~~~p~-~l~~l~~L~~L~l-~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 1316 (1448)
++|+.++.+|. .|.++++|++|++ ++.+..++....+++|+.|++++|.. ....+..|.++++|++|++++|
T Consensus 168 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l----~~~~~~~~~~l~~L~~L~L~~n-- 241 (440)
T 3zyj_A 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHL----SAIRPGSFQGLMHLQKLWMIQS-- 241 (440)
T ss_dssp CCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCC----CEECTTTTTTCTTCCEEECTTC--
T ss_pred CCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCcc----CccChhhhccCccCCEEECCCC--
Confidence 77776766664 4677777777777 66677666666667778888887742 2455667778888888888874
Q ss_pred cCccccccccccCCCCCCCCCcCeEEEccCCCCccccc-cccCCCCCCeEeecCCC
Q 048507 1317 DMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSS-SIVDLQNLTELRLLNCP 1371 (1448)
Q Consensus 1317 ~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~ 1371 (1448)
.+..++ +..|..+++|+.|+|++| .+..+|. .+..+++|+.|++++|+
T Consensus 242 ~l~~~~------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 242 QIQVIE------RNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCCEEC------TTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ceeEEC------hhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 333333 234667778888888885 4555553 45677888888887765
No 57
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=1.3e-19 Score=221.64 Aligned_cols=375 Identities=19% Similarity=0.162 Sum_probs=206.1
Q ss_pred CCcceEeecCCCCccccchhhhhHHHhhhhhhccccceEEecccCCcc----ccccccCccCCcceeeeccCCCCcccC-
Q 048507 960 CSLKRLTIDSCPTLQSLVAEEEKDQQQQLCELSCRLEYLELNECKGLV----KLPQSSLSLSSLREIEICGCSSLVSFP- 1034 (1448)
Q Consensus 960 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~----~lp~~~~~l~~L~~L~L~~c~~l~~~~- 1034 (1448)
++|++|+++++. ++..... .+...+++|++|++++|.... .++..+..+++|++|++++|..-...+
T Consensus 3 ~~l~~L~Ls~~~-l~~~~~~-------~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 74 (461)
T 1z7x_W 3 LDIQSLDIQCEE-LSDARWA-------ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVH 74 (461)
T ss_dssp EEEEEEEEESCC-CCHHHHH-------HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH
T ss_pred ccceehhhhhcc-cCchhHH-------HHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHH
Confidence 567788887654 3332211 122345788888888877543 445666777888888888874322111
Q ss_pred CC-CCcc----ccceeEecccCCCC----ccchhhccCCCCCcceEEEecCCCcccccC-------CcCCcCccEEEEec
Q 048507 1035 EV-ALPA----KLRIISINSCDALK----WLPEAWMCDFNSSLEILSIECCRSLTYIAG-------VQLPPSLKRLYIEF 1098 (1448)
Q Consensus 1035 ~~-~~~~----~L~~L~l~~~~~l~----~lp~~~~~~~~~~L~~L~l~~c~~l~~~~~-------~~~~~~L~~L~l~~ 1098 (1448)
.+ ..++ +|++|++++|.... .++..+. .+++|++|++++|. ++.... ....++|++|++++
T Consensus 75 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~--~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~ 151 (461)
T 1z7x_W 75 CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR--TLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEY 151 (461)
T ss_dssp HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTT--SCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHc--cCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCC
Confidence 11 1122 68888888876442 3344443 46777778777765 321110 01123455555555
Q ss_pred CCCCcccccccccccccCCccCCCCccceeeccCCCCcccccccCCCchhhhccccCCCCccccEEEEecCCCchhhhhh
Q 048507 1099 CDNIRTLTVEEGVQRSSSSRRCTSSLLEELDINSCPSLTCIFSKNELPATLESLEVGNLPESLKSLRVWDCPKLESIAER 1178 (1448)
Q Consensus 1099 ~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~ 1178 (1448)
|. +.... ...++..+... ++|++|++++|......+..
T Consensus 152 n~-l~~~~-----------------------------------~~~l~~~l~~~------~~L~~L~L~~n~i~~~~~~~ 189 (461)
T 1z7x_W 152 CS-LSAAS-----------------------------------CEPLASVLRAK------PDFKELTVSNNDINEAGVRV 189 (461)
T ss_dssp SC-CBGGG-----------------------------------HHHHHHHHHHC------TTCCEEECCSSBCHHHHHHH
T ss_pred CC-CCHHH-----------------------------------HHHHHHHHhhC------CCCCEEECcCCCcchHHHHH
Confidence 52 11100 00011111111 26666666666644433322
Q ss_pred cc-----cCCccceeeecccccccc----cCcccCCCCCccEEEcccCCCccc----c-CCCCCCCCCccEEEecCccCc
Q 048507 1179 LD-----NNTSLEIIRIAYCENLKI----LPSGLHNLRQLQEIEIRRCGNLVS----F-PKGGLPGAKLTRLEISDCNRL 1244 (1448)
Q Consensus 1179 ~~-----~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~L~~~~~l~~----l-p~~~~~~~~L~~L~l~~~~~~ 1244 (1448)
+. .+++|++|++++|.+... ++..+..+++|++|++++|..... + +.....+++|++|++++|...
T Consensus 190 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~ 269 (461)
T 1z7x_W 190 LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 269 (461)
T ss_dssp HHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 22 245677777777665542 455556667777777776642221 1 111223567777777776544
Q ss_pred cc----cccccCCCCcccceec-ccCCCccccC-------CCCCccceeeecccccccccccccCCccccCCCccEEEEe
Q 048507 1245 EA----LPKGLHNLKSLQELRI-GVELPSLEED-------GLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIE 1312 (1448)
Q Consensus 1245 ~~----~p~~l~~l~~L~~L~l-~~~l~~~~~~-------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~ 1312 (1448)
.. ++..+..+++|++|++ ++.+...... ...++|+.|++++|..........+..+..+++|++|+++
T Consensus 270 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 349 (461)
T 1z7x_W 270 AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS 349 (461)
T ss_dssp HHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEcc
Confidence 32 5556666777777777 3333321110 1125788888888863311111123456678999999999
Q ss_pred cCCCcCccccccccccCCCCC-CCCCcCeEEEccCCCCc----cccccccCCCCCCeEeecCCCCCCc---------CCC
Q 048507 1313 GCDDDMVSFPLEDKRLGTALP-LPASLTTLWIYNFPNLE----RLSSSIVDLQNLTELRLLNCPKLKY---------FPE 1378 (1448)
Q Consensus 1313 ~c~~~~~~~p~~~~~~~~~~~-~~~~L~~L~l~~~~~l~----~lp~~~~~l~~L~~L~l~~c~~l~~---------lp~ 1378 (1448)
+|. +...... .+...+. ..++|+.|++++|.... .+|..+..+++|++|++++|+ ++. +|.
T Consensus 350 ~n~--i~~~~~~--~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~ 424 (461)
T 1z7x_W 350 NNR--LEDAGVR--ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC-LGDAGILQLVESVRQ 424 (461)
T ss_dssp SSB--CHHHHHH--HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTS
T ss_pred CCc--cccccHH--HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC-CCHHHHHHHHHHhcc
Confidence 962 2221110 0111112 26799999999975433 788888889999999999975 443 222
Q ss_pred CCCcccccceeccCCc
Q 048507 1379 KGLPSSLLQLSIYRCP 1394 (1448)
Q Consensus 1379 ~~~~~~L~~L~i~~c~ 1394 (1448)
...+|+.|++.++.
T Consensus 425 --~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 425 --PGCLLEQLVLYDIY 438 (461)
T ss_dssp --TTCCCCEEECTTCC
T ss_pred --CCcchhheeecccc
Confidence 23467777776653
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=4.9e-17 Score=197.16 Aligned_cols=222 Identities=19% Similarity=0.192 Sum_probs=157.6
Q ss_pred CCccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCC-CCCCCCccE
Q 048507 1157 LPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKG-GLPGAKLTR 1235 (1448)
Q Consensus 1157 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~-~~~~~~L~~ 1235 (1448)
+|+++++|+|++|...+..+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|. ++.+|.. +..+++|++
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCE
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCE
Confidence 34578888888887777777778888888888888887777777778888888888888865 4455544 556788888
Q ss_pred EEecCccCccccccccCCCCcccceecc--cCCCccccCC--CCCccceeeecccccccccccccCCccccCCCccEEEE
Q 048507 1236 LEISDCNRLEALPKGLHNLKSLQELRIG--VELPSLEEDG--LPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTI 1311 (1448)
Q Consensus 1236 L~l~~~~~~~~~p~~l~~l~~L~~L~l~--~~l~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l 1311 (1448)
|++++|......+..+.++++|++|+++ +.+..++... .+++|+.|++++|... ....+..+++|++|++
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~l~~L~~L~L 225 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK------DMPNLTPLVGLEELEM 225 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS------SCCCCTTCTTCCEEEC
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc------ccccccccccccEEEC
Confidence 8888877554444567888888888882 4555555433 3578888888888532 1135777888888888
Q ss_pred ecCCCcCccccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCCCCC--Cccccccee
Q 048507 1312 EGCDDDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFPEKG--LPSSLLQLS 1389 (1448)
Q Consensus 1312 ~~c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~--~~~~L~~L~ 1389 (1448)
++| .+..++ +..|..+++|+.|++++|......|..+.++++|+.|++++| .++.+|... .+++|+.|+
T Consensus 226 s~N--~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 296 (452)
T 3zyi_A 226 SGN--HFPEIR------PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELH 296 (452)
T ss_dssp TTS--CCSEEC------GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEE
T ss_pred cCC--cCcccC------cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEE
Confidence 884 333333 233567788888888886544444667788888888888885 477777653 357888888
Q ss_pred ccCCc
Q 048507 1390 IYRCP 1394 (1448)
Q Consensus 1390 i~~c~ 1394 (1448)
+++||
T Consensus 297 L~~Np 301 (452)
T 3zyi_A 297 LHHNP 301 (452)
T ss_dssp CCSSC
T ss_pred ccCCC
Confidence 88876
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=7.9e-17 Score=195.36 Aligned_cols=198 Identities=22% Similarity=0.222 Sum_probs=143.6
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCC-CCCCCCCccEEEe
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPK-GGLPGAKLTRLEI 1238 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~-~~~~~~~L~~L~l 1238 (1448)
+|++|+|++|...+..+..+.++++|++|+|++|.+....+..+..+++|++|+|++|+. +.+|. .+..+++|+.|++
T Consensus 100 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l 178 (452)
T 3zyi_A 100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDL 178 (452)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCC-CEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCc-ceeCHhHHhcCCcccEEeC
Confidence 677777777776666667777888888888888776665556677788888888887653 44444 4556778888888
Q ss_pred cCccCcccccc-ccCCCCcccceec-ccCCCccccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecCCC
Q 048507 1239 SDCNRLEALPK-GLHNLKSLQELRI-GVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDD 1316 (1448)
Q Consensus 1239 ~~~~~~~~~p~-~l~~l~~L~~L~l-~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 1316 (1448)
++|+.++.+|. .+.++++|++|++ .+.+..++....+++|+.|++++|.. ....+..|.++++|+.|++++|
T Consensus 179 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l----~~~~~~~~~~l~~L~~L~L~~n-- 252 (452)
T 3zyi_A 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHF----PEIRPGSFHGLSSLKKLWVMNS-- 252 (452)
T ss_dssp CCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCC----SEECGGGGTTCTTCCEEECTTS--
T ss_pred CCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcC----cccCcccccCccCCCEEEeCCC--
Confidence 88777777765 4777888888888 66777777666677888888888853 3455667888888888888885
Q ss_pred cCccccccccccCCCCCCCCCcCeEEEccCCCCccccc-cccCCCCCCeEeecCCC
Q 048507 1317 DMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSS-SIVDLQNLTELRLLNCP 1371 (1448)
Q Consensus 1317 ~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~ 1371 (1448)
.+..++ +..|..+++|+.|+|++| .+..+|. .+..+++|+.|++++|+
T Consensus 253 ~l~~~~------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 253 QVSLIE------RNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCCEEC------TTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cCceEC------HHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 333333 234677888889998886 5666654 45778888889888875
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=1.6e-16 Score=196.35 Aligned_cols=257 Identities=29% Similarity=0.370 Sum_probs=136.4
Q ss_pred ccceEEecccCCccccccccCccCCcceeeeccCCCCcccCCCCCccccceeEecccCCCCccchhhccCCCCCcceEEE
Q 048507 994 RLEYLELNECKGLVKLPQSSLSLSSLREIEICGCSSLVSFPEVALPAKLRIISINSCDALKWLPEAWMCDFNSSLEILSI 1073 (1448)
Q Consensus 994 ~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~L~~L~l 1073 (1448)
+++.|++++|. ++.+|..+. ++|++|++++| .+..+|. .+++|++|++++|. ++.+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~-L~~lp~~l~--~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESG-LTTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSC-CSCCCSCCC--TTCSEEEECSC-CCSCCCC--CCTTCCEEEECSCC-CSCCCC-----CCTTCCEEEE
T ss_pred CCcEEEecCCC-cCccChhhC--CCCcEEEecCC-CCCCCCC--cCCCCCEEEcCCCc-CCcCCC-----CCCCCCEEEC
Confidence 57888888744 457776654 78888888886 4566665 56777777777765 444554 3566666666
Q ss_pred ecCCCcccccCCcCCcCccEEEEecCCCCcccccccccccccCCccCCCCccceeeccCCCCcccccccCCCchhhhccc
Q 048507 1074 ECCRSLTYIAGVQLPPSLKRLYIEFCDNIRTLTVEEGVQRSSSSRRCTSSLLEELDINSCPSLTCIFSKNELPATLESLE 1153 (1448)
Q Consensus 1074 ~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~l~ 1153 (1448)
++|. ++.++. .+++|+.|++++|. +..+ |.
T Consensus 109 s~N~-l~~l~~--~l~~L~~L~L~~N~-l~~l----------------------------------------p~------ 138 (622)
T 3g06_A 109 FSNP-LTHLPA--LPSGLCKLWIFGNQ-LTSL----------------------------------------PV------ 138 (622)
T ss_dssp CSCC-CCCCCC--CCTTCCEEECCSSC-CSCC----------------------------------------CC------
T ss_pred cCCc-CCCCCC--CCCCcCEEECCCCC-CCcC----------------------------------------CC------
Confidence 6653 333322 23334444333331 1111 00
Q ss_pred cCCCCccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCc
Q 048507 1154 VGNLPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKL 1233 (1448)
Q Consensus 1154 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L 1233 (1448)
.+++|++|++++|...+ +|. .+++|+.|++++|.+.+ +| ..+++|+.|++++|. ++.+|.. .++|
T Consensus 139 ---~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~-l~~l~~~---~~~L 203 (622)
T 3g06_A 139 ---LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQ-LASLPTL---PSEL 203 (622)
T ss_dssp ---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSC-CSCCCCC---CTTC
T ss_pred ---CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCC-CCCCCCc---cchh
Confidence 00244444444443322 221 22344444444443332 33 223444555554432 2333331 2344
Q ss_pred cEEEecCccCccccccccCCCCcccceecccCCCccccCCCCCccceeeecccccccccccccCCccccCCCccEEEEec
Q 048507 1234 TRLEISDCNRLEALPKGLHNLKSLQELRIGVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEG 1313 (1448)
Q Consensus 1234 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~ 1313 (1448)
+.|++++| .+..++. .+++|+.|++++|... ..+ ..+++|++|++++
T Consensus 204 ~~L~L~~N-----------------------~l~~l~~--~~~~L~~L~Ls~N~L~----~lp----~~l~~L~~L~Ls~ 250 (622)
T 3g06_A 204 YKLWAYNN-----------------------RLTSLPA--LPSGLKELIVSGNRLT----SLP----VLPSELKELMVSG 250 (622)
T ss_dssp CEEECCSS-----------------------CCSSCCC--CCTTCCEEECCSSCCS----CCC----CCCTTCCEEECCS
T ss_pred hEEECcCC-----------------------cccccCC--CCCCCCEEEccCCccC----cCC----CCCCcCcEEECCC
Confidence 44444443 3333332 2355666666666321 111 3456777777777
Q ss_pred CCCcCccccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCCCCC
Q 048507 1314 CDDDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKL 1373 (1448)
Q Consensus 1314 c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l 1373 (1448)
| .+..+|. .+++|+.|+|++| .+..+|..+.++++|+.|++++|+.-
T Consensus 251 N--~L~~lp~----------~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 251 N--RLTSLPM----------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp S--CCSCCCC----------CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred C--CCCcCCc----------ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCC
Confidence 4 4445552 4567788888775 56677877778888888888886643
No 61
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=8.1e-19 Score=222.24 Aligned_cols=38 Identities=16% Similarity=0.086 Sum_probs=17.9
Q ss_pred CCCCcCeEEEccCCCCc-cccccccCCCCCCeEeecCCC
Q 048507 1334 LPASLTTLWIYNFPNLE-RLSSSIVDLQNLTELRLLNCP 1371 (1448)
Q Consensus 1334 ~~~~L~~L~l~~~~~l~-~lp~~~~~l~~L~~L~l~~c~ 1371 (1448)
.+++|+.|+|++|+... .++..+..+++|++|++++|+
T Consensus 486 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 486 GCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred cCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 34555555555554111 123333445555555555554
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.71 E-value=3.9e-17 Score=191.15 Aligned_cols=108 Identities=17% Similarity=0.099 Sum_probs=70.6
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccccccccC-cccCCCCCccEEEcccCCCccccC-CCCCCCCCccEEE
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILP-SGLHNLRQLQEIEIRRCGNLVSFP-KGGLPGAKLTRLE 1237 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p-~~l~~l~~L~~L~L~~~~~l~~lp-~~~~~~~~L~~L~ 1237 (1448)
+|++|++++|...+..+..++++++|++|++++|.+.+..+ ..+..+++|++|++++|+.++.++ ..+..+++|++|+
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence 66666666666555444457777777777777766554222 356777777777777775555553 3455677777777
Q ss_pred ecCccCccccccccCCCCcccceec-ccCCC
Q 048507 1238 ISDCNRLEALPKGLHNLKSLQELRI-GVELP 1267 (1448)
Q Consensus 1238 l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~ 1267 (1448)
+++|...+..|..+..+++|++|++ .+.+.
T Consensus 181 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 181 IDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp EEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 7777766666777777777777777 34433
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.71 E-value=1.1e-16 Score=193.46 Aligned_cols=223 Identities=17% Similarity=0.186 Sum_probs=182.2
Q ss_pred CCccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCC-CCCCCCCccE
Q 048507 1157 LPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPK-GGLPGAKLTR 1235 (1448)
Q Consensus 1157 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~-~~~~~~~L~~ 1235 (1448)
++++++.|+|++|...+..+..|.++++|++|+|++|.+.+..+..|.++++|++|+|++|. ++.+|. .+..+++|++
T Consensus 62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKE 140 (440)
T ss_dssp CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCE
T ss_pred CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCce
Confidence 44699999999999888888899999999999999999888777889999999999999974 556665 5677899999
Q ss_pred EEecCccCccccccccCCCCcccceecc--cCCCccccCC--CCCccceeeecccccccccccccCCccccCCCccEEEE
Q 048507 1236 LEISDCNRLEALPKGLHNLKSLQELRIG--VELPSLEEDG--LPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTI 1311 (1448)
Q Consensus 1236 L~l~~~~~~~~~p~~l~~l~~L~~L~l~--~~l~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l 1311 (1448)
|+|++|......+..+.++++|++|+++ +.+..++... -+++|+.|++++|... ....+..+++|++|++
T Consensus 141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~l~~L~~L~L 214 (440)
T 3zyj_A 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR------EIPNLTPLIKLDELDL 214 (440)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS------SCCCCTTCSSCCEEEC
T ss_pred eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc------cccccCCCcccCEEEC
Confidence 9999998666556689999999999993 5566666543 3689999999999632 1235888999999999
Q ss_pred ecCCCcCccccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCCCCC--Cccccccee
Q 048507 1312 EGCDDDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFPEKG--LPSSLLQLS 1389 (1448)
Q Consensus 1312 ~~c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~--~~~~L~~L~ 1389 (1448)
++| .+..++ +..|..+++|+.|++++|......+..+.++++|+.|++++| .++.+|... .+++|+.|+
T Consensus 215 s~N--~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 285 (440)
T 3zyj_A 215 SGN--HLSAIR------PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIH 285 (440)
T ss_dssp TTS--CCCEEC------TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEE
T ss_pred CCC--ccCccC------hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEE
Confidence 995 344443 345788999999999996544444667899999999999996 588888753 368999999
Q ss_pred ccCCch
Q 048507 1390 IYRCPL 1395 (1448)
Q Consensus 1390 i~~c~~ 1395 (1448)
+++||.
T Consensus 286 L~~Np~ 291 (440)
T 3zyj_A 286 LHHNPW 291 (440)
T ss_dssp CCSSCE
T ss_pred cCCCCc
Confidence 999873
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.70 E-value=1.5e-16 Score=179.94 Aligned_cols=202 Identities=22% Similarity=0.265 Sum_probs=132.8
Q ss_pred CCccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCcccc-CCCCCCCCCccE
Q 048507 1157 LPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSF-PKGGLPGAKLTR 1235 (1448)
Q Consensus 1157 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~l-p~~~~~~~~L~~ 1235 (1448)
+|++|++|++++|...+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|..++.+ |..+..+++|++
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 4568999999999888777778999999999999999888777888999999999999998767766 566777899999
Q ss_pred EEecCccCccccccccCCCCcccceec-ccCCCccccCC--CCCccceeeecccccccccccccCCccccCCCccEEEEe
Q 048507 1236 LEISDCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDG--LPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIE 1312 (1448)
Q Consensus 1236 L~l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~ 1312 (1448)
|++++|...+..|..+.++++|++|++ ++.+..++... .+++|+.|++++|.. ...+...+..+++|++|+++
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI----SSVPERAFRGLHSLDRLLLH 185 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC----CEECTTTTTTCTTCCEEECC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc----cccCHHHhcCccccCEEECC
Confidence 999999877777788888999999888 55555554422 234555555555531 12233344455555555555
Q ss_pred cCCCcCccccccccccCCCCCCCCCcCeEEEccCCCCcccc-ccccCCCCCCeEeecCCC
Q 048507 1313 GCDDDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLS-SSIVDLQNLTELRLLNCP 1371 (1448)
Q Consensus 1313 ~c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~ 1371 (1448)
+| .+..++ +..+..+++|+.|++++| .+..+| ..+..+++|+.|++++|+
T Consensus 186 ~n--~l~~~~------~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 186 QN--RVAHVH------PHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp SS--CCCEEC------TTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred CC--cccccC------HhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCC
Confidence 53 111111 122344445555555553 222232 234444555555554443
No 65
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.70 E-value=3.5e-19 Score=225.81 Aligned_cols=146 Identities=14% Similarity=0.160 Sum_probs=65.5
Q ss_pred cccCCcceEeecCCCCccccch------hhhhHHHhhhhhhccccceEEecccCCccccccccC-ccCCcceeeeccCCC
Q 048507 957 QDICSLKRLTIDSCPTLQSLVA------EEEKDQQQQLCELSCRLEYLELNECKGLVKLPQSSL-SLSSLREIEICGCSS 1029 (1448)
Q Consensus 957 ~~l~~L~~L~l~~~~~l~~l~~------~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~lp~~~~-~l~~L~~L~L~~c~~ 1029 (1448)
..+++|+.|++++|+.+..+.. ......+..+...+++|++|++++|......+..+. .+++|++|++++|..
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 4455666666666554433211 011112223333455666666666554333333332 456666666666644
Q ss_pred Ccc--cCCCC-CccccceeEecccCCCCccchhh--ccCCCCCcceEEEecCC-Ccc--cccC-CcCCcCccEEEEecCC
Q 048507 1030 LVS--FPEVA-LPAKLRIISINSCDALKWLPEAW--MCDFNSSLEILSIECCR-SLT--YIAG-VQLPPSLKRLYIEFCD 1100 (1448)
Q Consensus 1030 l~~--~~~~~-~~~~L~~L~l~~~~~l~~lp~~~--~~~~~~~L~~L~l~~c~-~l~--~~~~-~~~~~~L~~L~l~~~~ 1100 (1448)
+.. ++... .+++|++|++++|......+..+ ....+++|++|++++|. .+. .+.. ...+++|++|++++|.
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence 332 22221 35566666666655222111111 11235566666666654 111 0100 1124566666666664
Q ss_pred CC
Q 048507 1101 NI 1102 (1448)
Q Consensus 1101 ~l 1102 (1448)
.+
T Consensus 223 ~~ 224 (594)
T 2p1m_B 223 PL 224 (594)
T ss_dssp CH
T ss_pred cH
Confidence 33
No 66
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=8.1e-17 Score=188.40 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=42.2
Q ss_pred cccEEEEecCCCchhh-hhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCC-CCCCccEEE
Q 048507 1160 SLKSLRVWDCPKLESI-AERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGL-PGAKLTRLE 1237 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~-~~~~L~~L~ 1237 (1448)
+|++|++++|...+.+ +..+.++++|++|++++|.+.+..|..+..+++|++|++++|. ++.+|..+. .+++|++|+
T Consensus 150 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~ 228 (353)
T 2z80_A 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLE 228 (353)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEE
T ss_pred CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEE
Confidence 5555556555433332 3455555566666666555555555555555555555555543 233333221 144555555
Q ss_pred ecCccC
Q 048507 1238 ISDCNR 1243 (1448)
Q Consensus 1238 l~~~~~ 1243 (1448)
+++|..
T Consensus 229 L~~n~l 234 (353)
T 2z80_A 229 LRDTDL 234 (353)
T ss_dssp EESCBC
T ss_pred CCCCcc
Confidence 555543
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=1.4e-16 Score=182.38 Aligned_cols=226 Identities=17% Similarity=0.105 Sum_probs=159.6
Q ss_pred CCccccEEEEecCCCchhhhhhcccCCccceeeeccccccc--ccCcccCCCCCccEEEcccCCCccccCCCCCCCCCcc
Q 048507 1157 LPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLK--ILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLT 1234 (1448)
Q Consensus 1157 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~--~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~ 1234 (1448)
+|++|++|++++|......+..+.++++|++|++++|.+.. ..|..+..+++|++|++++|. +..+|..+..+++|+
T Consensus 26 ~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLE 104 (306)
T ss_dssp CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCC
T ss_pred CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCC
Confidence 34578888888877654444457888888888888877653 235556677888888888864 456776677778888
Q ss_pred EEEecCccCccccc-cccCCCCcccceec-ccCCCccccCC--CCCccceeeecccccccccccccCCccccCCCccEEE
Q 048507 1235 RLEISDCNRLEALP-KGLHNLKSLQELRI-GVELPSLEEDG--LPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLT 1310 (1448)
Q Consensus 1235 ~L~l~~~~~~~~~p-~~l~~l~~L~~L~l-~~~l~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ 1310 (1448)
+|++++|...+..+ ..+..+++|++|++ ++.+....... ..++|+.|++++|... ....+..+..+++|++|+
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~~l~~L~~L~ 181 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ---ENFLPDIFTELRNLTFLD 181 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG---GGEECSCCTTCTTCCEEE
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc---cccchhHHhhCcCCCEEE
Confidence 88888876554433 46788888888888 45555444332 3478888888888532 113566788899999999
Q ss_pred EecCCCcCccccccccccCCCCCCCCCcCeEEEccCCCCcccc-ccccCCCCCCeEeecCCCCCCcCCCC--CCcccccc
Q 048507 1311 IEGCDDDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLS-SSIVDLQNLTELRLLNCPKLKYFPEK--GLPSSLLQ 1387 (1448)
Q Consensus 1311 l~~c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~ 1387 (1448)
+++| .+..++ +..+..+++|+.|++++|. +..++ ..+..+++|+.|++++|+..+..|.. .++++|+.
T Consensus 182 Ls~n--~l~~~~------~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~ 252 (306)
T 2z66_A 182 LSQC--QLEQLS------PTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 252 (306)
T ss_dssp CTTS--CCCEEC------TTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCE
T ss_pred CCCC--CcCCcC------HHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCE
Confidence 9985 333332 3446788999999999965 55554 46788999999999997644444432 23569999
Q ss_pred eeccCCch
Q 048507 1388 LSIYRCPL 1395 (1448)
Q Consensus 1388 L~i~~c~~ 1395 (1448)
|++++|+.
T Consensus 253 L~L~~N~~ 260 (306)
T 2z66_A 253 LNLTQNDF 260 (306)
T ss_dssp EECTTCCE
T ss_pred EEccCCCe
Confidence 99999874
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=3.5e-16 Score=179.11 Aligned_cols=103 Identities=21% Similarity=0.188 Sum_probs=64.8
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeeccccccc-ccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEe
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLK-ILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEI 1238 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~-~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l 1238 (1448)
+|++|++++|...+..+..+.++++|++|++++|.+.+ .+|..+..+++|++|++++|......|..+..+++|++|++
T Consensus 127 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 206 (306)
T 2z66_A 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206 (306)
T ss_dssp TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence 66666666666666666666667777777777766655 45666666777777777766544444555556667777777
Q ss_pred cCccCccccccccCCCCcccceec
Q 048507 1239 SDCNRLEALPKGLHNLKSLQELRI 1262 (1448)
Q Consensus 1239 ~~~~~~~~~p~~l~~l~~L~~L~l 1262 (1448)
++|...+..+..+..+++|++|++
T Consensus 207 ~~N~l~~~~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 207 SHNNFFSLDTFPYKCLNSLQVLDY 230 (306)
T ss_dssp TTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred CCCccCccChhhccCcccCCEeEC
Confidence 766655444445556666666665
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.68 E-value=1.3e-18 Score=220.49 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=53.4
Q ss_pred ccCCcceEeecCCCCccccchhhhhHHHhhhhhhccccceEEecccCCccc----cccccCccCCcceeeeccCCCCccc
Q 048507 958 DICSLKRLTIDSCPTLQSLVAEEEKDQQQQLCELSCRLEYLELNECKGLVK----LPQSSLSLSSLREIEICGCSSLVSF 1033 (1448)
Q Consensus 958 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~----lp~~~~~l~~L~~L~L~~c~~l~~~ 1033 (1448)
.+++|++|++++|..++.. .+..+...+++|++|++++|..... ++.....+++|++|++++|. ..+
T Consensus 128 ~~~~L~~L~L~~~~~~~~~-------~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~ 198 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTD-------GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEV 198 (594)
T ss_dssp HCTTCCEEEEESCEEEEHH-------HHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCC
T ss_pred hCCCCcEEeCCCcCCCCHH-------HHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcC
Confidence 3566666666666544321 1112222356667777766652221 22223355667777776664 111
Q ss_pred C-----C-CCCccccceeEecccCCCCccchhhccCCCCCcceEEEecC
Q 048507 1034 P-----E-VALPAKLRIISINSCDALKWLPEAWMCDFNSSLEILSIECC 1076 (1448)
Q Consensus 1034 ~-----~-~~~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~L~~L~l~~c 1076 (1448)
. . ...+++|++|++++|..++.++..+. .+++|++|++++|
T Consensus 199 ~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~--~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 199 SFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ--RAPQLEELGTGGY 245 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHH--HCTTCSEEECSBC
T ss_pred CHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHh--cCCcceEcccccc
Confidence 1 0 11245666666666654444444333 3556666665544
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.66 E-value=4.3e-17 Score=187.14 Aligned_cols=100 Identities=9% Similarity=0.008 Sum_probs=68.0
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccccccccCccc-CCCCCccEEEcccCCCccccCCCCCCCCCccEEEe
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGL-HNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEI 1238 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l-~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l 1238 (1448)
+|++|++++|...+..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|. ++.+|... .+++|++|++
T Consensus 121 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-~l~~L~~L~L 198 (317)
T 3o53_A 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQV-VFAKLKTLDL 198 (317)
T ss_dssp SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCC-CCTTCCEEEC
T ss_pred CCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccccccc-ccccCCEEEC
Confidence 67888888887777667778888888888888888777666655 367888888888865 44455432 3678888888
Q ss_pred cCccCccccccccCCCCcccceec
Q 048507 1239 SDCNRLEALPKGLHNLKSLQELRI 1262 (1448)
Q Consensus 1239 ~~~~~~~~~p~~l~~l~~L~~L~l 1262 (1448)
++|... .+|..+..+++|++|++
T Consensus 199 s~N~l~-~l~~~~~~l~~L~~L~L 221 (317)
T 3o53_A 199 SSNKLA-FMGPEFQSAAGVTWISL 221 (317)
T ss_dssp CSSCCC-EECGGGGGGTTCSEEEC
T ss_pred CCCcCC-cchhhhcccCcccEEEC
Confidence 887643 34434444444444444
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=3.2e-16 Score=190.53 Aligned_cols=213 Identities=15% Similarity=0.112 Sum_probs=162.6
Q ss_pred CccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEE
Q 048507 1158 PESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLE 1237 (1448)
Q Consensus 1158 ~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~ 1237 (1448)
+++|++|+|++|...+..|..+..+++|++|+|++|.+.+..| +..+++|++|+|++|. ++.+|. .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELLV----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEEE----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCCC----CCCcCEEE
Confidence 3589999999998888778889999999999999988877665 8889999999999864 555553 27899999
Q ss_pred ecCccCccccccccCCCCcccceec-ccCCCccccCCC--CCccceeeecccccccccccccCCccc-cCCCccEEEEec
Q 048507 1238 ISDCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGL--PTNLHSLGIRGNMEIWKSTIERGRGFH-RFSSLQHLTIEG 1313 (1448)
Q Consensus 1238 l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~-~l~~L~~L~l~~ 1313 (1448)
+++|.+.+..+. .+++|+.|++ +|.+..++...+ +++|+.|++++|... ...+..+. .+++|++|++++
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~----~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID----TVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC----EEEGGGGGGGTTTCCEEECTT
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC----CcChHHHhhhCCcccEEecCC
Confidence 999886665543 4578889999 667776655433 588999999998533 33444454 789999999998
Q ss_pred CCCcCccccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCCCC-CCcccccceeccC
Q 048507 1314 CDDDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFPEK-GLPSSLLQLSIYR 1392 (1448)
Q Consensus 1314 c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~i~~ 1392 (1448)
| .+..+|. ...+++|+.|+|++| .+..+|..+..+++|+.|++++|. +..+|.. +.+++|+.|++++
T Consensus 179 N--~l~~~~~--------~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 179 N--FIYDVKG--------QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRG 246 (487)
T ss_dssp S--CCCEEEC--------CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTT
T ss_pred C--ccccccc--------cccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCC
Confidence 5 3444442 235889999999985 577787778889999999999854 7778764 4468899999999
Q ss_pred CchH
Q 048507 1393 CPLI 1396 (1448)
Q Consensus 1393 c~~l 1396 (1448)
|+..
T Consensus 247 N~l~ 250 (487)
T 3oja_A 247 NGFH 250 (487)
T ss_dssp CCBC
T ss_pred CCCc
Confidence 8755
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=2e-17 Score=189.37 Aligned_cols=222 Identities=16% Similarity=0.075 Sum_probs=156.6
Q ss_pred cccEEEEecCCC-chhhhhhcc-------cCCccceeeecccccccccCccc--CCCCCccEEEcccCCCccccCCCCCC
Q 048507 1160 SLKSLRVWDCPK-LESIAERLD-------NNTSLEIIRIAYCENLKILPSGL--HNLRQLQEIEIRRCGNLVSFPKGGLP 1229 (1448)
Q Consensus 1160 ~L~~L~L~~~~~-~~~~~~~~~-------~l~~L~~L~Ls~n~~~~~~p~~l--~~l~~L~~L~L~~~~~l~~lp~~~~~ 1229 (1448)
.|+.|++++|.. ...+|..+. ++++|++|++++|.+.+.+|..+ ..+++|++|++++|.. +.+|..+..
T Consensus 64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~ 142 (312)
T 1wwl_A 64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW-ATRDAWLAE 142 (312)
T ss_dssp HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC-SSSSSHHHH
T ss_pred HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC-cchhHHHHH
Confidence 466777777665 234454444 68889999999888888888776 7888899999988654 434654444
Q ss_pred C-----CCccEEEecCccCccccccccCCCCcccceec-ccCCCcc----ccC--CCCCccceeeecccccccccccccC
Q 048507 1230 G-----AKLTRLEISDCNRLEALPKGLHNLKSLQELRI-GVELPSL----EED--GLPTNLHSLGIRGNMEIWKSTIERG 1297 (1448)
Q Consensus 1230 ~-----~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~----~~~--~~~~~L~~L~l~~n~~~~~~~~~~~ 1297 (1448)
+ ++|++|++++|...+..|..+.++++|++|++ +|.+... +.. ..+++|+.|++++|... .......
T Consensus 143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~ 221 (312)
T 1wwl_A 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME-TPSGVCS 221 (312)
T ss_dssp HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC-CHHHHHH
T ss_pred HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc-chHHHHH
Confidence 4 78899999988877766688888889999988 4443321 122 44578889999888532 1112222
Q ss_pred CccccCCCccEEEEecCCCcCccccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCC
Q 048507 1298 RGFHRFSSLQHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFP 1377 (1448)
Q Consensus 1298 ~~~~~l~~L~~L~l~~c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp 1377 (1448)
..+.++++|++|++++| .+...+. ...+..+++|+.|++++| .++.+|.++. ++|++|++++| .++.+|
T Consensus 222 ~~~~~l~~L~~L~Ls~N--~l~~~~~-----~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p 290 (312)
T 1wwl_A 222 ALAAARVQLQGLDLSHN--SLRDAAG-----APSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNP 290 (312)
T ss_dssp HHHHTTCCCSEEECTTS--CCCSSCC-----CSCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCC
T ss_pred HHHhcCCCCCEEECCCC--cCCcccc-----hhhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCCh
Confidence 34557789999999985 2333221 012456789999999995 5678888766 78999999985 578888
Q ss_pred CCCCcccccceeccCCc
Q 048507 1378 EKGLPSSLLQLSIYRCP 1394 (1448)
Q Consensus 1378 ~~~~~~~L~~L~i~~c~ 1394 (1448)
.....++|+.|++++|+
T Consensus 291 ~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 291 SPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CTTTSCEEEEEECTTCT
T ss_pred hHhhCCCCCEEeccCCC
Confidence 76667899999999886
No 73
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.65 E-value=1.5e-15 Score=171.60 Aligned_cols=218 Identities=19% Similarity=0.146 Sum_probs=172.8
Q ss_pred cEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEecCc
Q 048507 1162 KSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEISDC 1241 (1448)
Q Consensus 1162 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~~~ 1241 (1448)
+.++.+++ .+..+|.. -.++|++|++++|.+.+..+..+..+++|++|++++|......|..+..+++|++|++++|
T Consensus 14 ~~~~c~~~-~l~~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQ-GLQAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSS-CCSSCCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcC-CcccCCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45555443 34455543 3579999999999988877788999999999999998655555777888999999999999
Q ss_pred cCcccc-ccccCCCCcccceec-ccCCCccccCC--CCCccceeeecccccccccccccCCccccCCCccEEEEecCCCc
Q 048507 1242 NRLEAL-PKGLHNLKSLQELRI-GVELPSLEEDG--LPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDD 1317 (1448)
Q Consensus 1242 ~~~~~~-p~~l~~l~~L~~L~l-~~~l~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~ 1317 (1448)
..++.+ |..+..+++|++|++ ++.+..++... .+++|++|++++|.. ....+..+..+++|++|++++| .
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n--~ 164 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL----QALPDDTFRDLGNLTHLFLHGN--R 164 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCSS--C
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcc----cccCHhHhccCCCccEEECCCC--c
Confidence 855555 778999999999999 67777775543 368999999999963 3455567889999999999995 4
Q ss_pred CccccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCCCC--CCcccccceeccCCch
Q 048507 1318 MVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFPEK--GLPSSLLQLSIYRCPL 1395 (1448)
Q Consensus 1318 ~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~i~~c~~ 1395 (1448)
+..+|. ..+..+++|+.|++++|......|..+..+++|+.|++++|. ++.+|.. ...++|+.|++++||.
T Consensus 165 l~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 165 ISSVPE------RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CCEECT------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred ccccCH------HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCCc
Confidence 555553 236789999999999976555558889999999999999964 7777753 4578999999999874
No 74
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.64 E-value=5.3e-16 Score=178.04 Aligned_cols=209 Identities=15% Similarity=0.132 Sum_probs=89.7
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEec
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEIS 1239 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~ 1239 (1448)
+|++|++++|...+..|..+..+++|++|++++|.+.+..+ +..+++|++|++++|. ++.++. .++|++|+++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~-l~~l~~----~~~L~~L~l~ 107 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELLV----GPSIETLHAA 107 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE-EEEEEE----CTTCCEEECC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc-cccccC----CCCcCEEECC
Confidence 45555555554444444445555555555555544443332 4445555555555432 233321 1445555555
Q ss_pred CccCccccccccCCCCcccceec-ccCCCccccCCC--CCccceeeecccccccccccccCCcc-ccCCCccEEEEecCC
Q 048507 1240 DCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGL--PTNLHSLGIRGNMEIWKSTIERGRGF-HRFSSLQHLTIEGCD 1315 (1448)
Q Consensus 1240 ~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~-~~l~~L~~L~l~~c~ 1315 (1448)
+|...+..+. .+++|++|++ ++.+..++...+ +++|+.|++++|... ...+..+ ..+++|++|++++|
T Consensus 108 ~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~~l~~L~~L~L~~N- 179 (317)
T 3o53_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID----TVNFAELAASSDTLEHLNLQYN- 179 (317)
T ss_dssp SSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC----EEEGGGGGGGTTTCCEEECTTS-
T ss_pred CCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC----cccHHHHhhccCcCCEEECCCC-
Confidence 5443332221 2344455555 344444333222 344555555554321 1112222 23455555555543
Q ss_pred CcCccccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCCCC-CCcccccceeccCCc
Q 048507 1316 DDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFPEK-GLPSSLLQLSIYRCP 1394 (1448)
Q Consensus 1316 ~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~i~~c~ 1394 (1448)
.+..+|.. ..+++|+.|++++| .+..+|..+..+++|+.|++++| .++.+|.. ...++|+.|++++|+
T Consensus 180 -~l~~~~~~--------~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 180 -FIYDVKGQ--------VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp -CCCEEECC--------CCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred -cCcccccc--------cccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCC
Confidence 22222211 12445555555552 34444444445555555555553 24444432 223455555555543
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=1e-15 Score=167.88 Aligned_cols=205 Identities=18% Similarity=0.143 Sum_probs=147.7
Q ss_pred CCccccEEEEecCCCchhhhhhcccCCccceeeeccccccccc-CcccCCCCCccEEEcccCCCccccCC-CCCCCCCcc
Q 048507 1157 LPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKIL-PSGLHNLRQLQEIEIRRCGNLVSFPK-GGLPGAKLT 1234 (1448)
Q Consensus 1157 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~-p~~l~~l~~L~~L~L~~~~~l~~lp~-~~~~~~~L~ 1234 (1448)
+|++|++|++++|...+..+..+.++++|++|++++|..++.+ +..|.++++|++|++++|+.++.+|. .+..+++|+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 5568999999998877666668888999999999988744444 45788888999999988566667764 455678889
Q ss_pred EEEecCccCccccccccCCCCcccceecccCCCccccCCCCCccceeeecccccccccccccCCccccCCCcc-EEEEec
Q 048507 1235 RLEISDCNRLEALPKGLHNLKSLQELRIGVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQ-HLTIEG 1313 (1448)
Q Consensus 1235 ~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~-~L~l~~ 1313 (1448)
+|++++|...+ +|. +..+++|+. |+.|++++|+.+ ...++..|..+++|+ +|++++
T Consensus 109 ~L~l~~n~l~~-lp~-~~~l~~L~~------------------L~~L~l~~N~~l---~~i~~~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 109 FLGIFNTGLKM-FPD-LTKVYSTDI------------------FFILEITDNPYM---TSIPVNAFQGLCNETLTLKLYN 165 (239)
T ss_dssp EEEEEEECCCS-CCC-CTTCCBCCS------------------EEEEEEESCTTC---CEECTTTTTTTBSSEEEEECCS
T ss_pred EEeCCCCCCcc-ccc-ccccccccc------------------ccEEECCCCcch---hhcCcccccchhcceeEEEcCC
Confidence 99998877544 665 666665551 224555555222 133445678888999 999988
Q ss_pred CCCcCccccccccccCCCCCCCCCcCeEEEccCCCCccccc-cccCC-CCCCeEeecCCCCCCcCCCCCCcccccceecc
Q 048507 1314 CDDDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSS-SIVDL-QNLTELRLLNCPKLKYFPEKGLPSSLLQLSIY 1391 (1448)
Q Consensus 1314 c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~~~~l-~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~i~ 1391 (1448)
| .+..+|... +.. ++|+.|++++|..++.+|. .+.++ ++|+.|++++| .++.+|.. ..++|+.|++.
T Consensus 166 n--~l~~i~~~~------~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~-~~~~L~~L~l~ 234 (239)
T 2xwt_C 166 N--GFTSVQGYA------FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK-GLEHLKELIAR 234 (239)
T ss_dssp C--CCCEECTTT------TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT-TCTTCSEEECT
T ss_pred C--CCcccCHhh------cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh-HhccCceeecc
Confidence 4 455666432 334 7899999999766878764 57788 89999999984 58888875 67789999999
Q ss_pred CCch
Q 048507 1392 RCPL 1395 (1448)
Q Consensus 1392 ~c~~ 1395 (1448)
+|..
T Consensus 235 ~~~~ 238 (239)
T 2xwt_C 235 NTWT 238 (239)
T ss_dssp TC--
T ss_pred CccC
Confidence 8864
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=1.2e-16 Score=183.03 Aligned_cols=82 Identities=17% Similarity=0.186 Sum_probs=36.7
Q ss_pred cccCCcceEeecCCCCccccchhhhhHHHhhhhhhccccceEEecccCCc-cccccccC-------ccCCcceeeeccCC
Q 048507 957 QDICSLKRLTIDSCPTLQSLVAEEEKDQQQQLCELSCRLEYLELNECKGL-VKLPQSSL-------SLSSLREIEICGCS 1028 (1448)
Q Consensus 957 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l-~~lp~~~~-------~l~~L~~L~L~~c~ 1028 (1448)
....+|+.|+++++.. .+|.. .+..|+.|++++|... ..+|..+. .+++|++|++++|.
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~-----------~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 106 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQ-----------FTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHH-----------HHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB
T ss_pred ccCCCceeEeeccccc--ccHHH-----------HHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc
Confidence 3445566666665443 33332 1123555555554431 23333222 35555555555554
Q ss_pred CCcccCCC---CCccccceeEecccC
Q 048507 1029 SLVSFPEV---ALPAKLRIISINSCD 1051 (1448)
Q Consensus 1029 ~l~~~~~~---~~~~~L~~L~l~~~~ 1051 (1448)
....+|.. ..+++|++|++++|.
T Consensus 107 l~~~~~~~~~~~~l~~L~~L~Ls~N~ 132 (312)
T 1wwl_A 107 VTGTAPPPLLEATGPDLNILNLRNVS 132 (312)
T ss_dssp CBSCCCCCSSSCCSCCCSEEEEESCB
T ss_pred ccchhHHHHHHhcCCCccEEEccCCC
Confidence 33333331 234445555554444
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=1.9e-15 Score=183.69 Aligned_cols=215 Identities=13% Similarity=0.111 Sum_probs=135.1
Q ss_pred hhccccceEEecccCCccccccccCccCCcceeeeccCCCCcccCCCCCccccceeEecccCCCCccchhhccCCCCCcc
Q 048507 990 ELSCRLEYLELNECKGLVKLPQSSLSLSSLREIEICGCSSLVSFPEVALPAKLRIISINSCDALKWLPEAWMCDFNSSLE 1069 (1448)
Q Consensus 990 ~~~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~L~ 1069 (1448)
..+++|++|+|++|......|..+..+++|++|+|++|. +...+.+..+++|++|++++|. +..+|. .
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~------~---- 98 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELLV------G---- 98 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSSE-EEEEEE------C----
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCCc-CCCCCC------C----
Confidence 345678888888876665556677778888888888764 3323224445555555555543 112211 1
Q ss_pred eEEEecCCCcccccCCcCCcCccEEEEecCCCCcccccccccccccCCccCCCCccceeeccCCCCcccccccCCCchhh
Q 048507 1070 ILSIECCRSLTYIAGVQLPPSLKRLYIEFCDNIRTLTVEEGVQRSSSSRRCTSSLLEELDINSCPSLTCIFSKNELPATL 1149 (1448)
Q Consensus 1070 ~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l 1149 (1448)
++|+.|++++|. +..+
T Consensus 99 -------------------~~L~~L~L~~N~-l~~~-------------------------------------------- 114 (487)
T 3oja_A 99 -------------------PSIETLHAANNN-ISRV-------------------------------------------- 114 (487)
T ss_dssp -------------------TTCCEEECCSSC-CCCE--------------------------------------------
T ss_pred -------------------CCcCEEECcCCc-CCCC--------------------------------------------
Confidence 334444444432 0000
Q ss_pred hccccCCCCccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccC-CCCCccEEEcccCCCccccCCCCC
Q 048507 1150 ESLEVGNLPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLH-NLRQLQEIEIRRCGNLVSFPKGGL 1228 (1448)
Q Consensus 1150 ~~l~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~-~l~~L~~L~L~~~~~l~~lp~~~~ 1228 (1448)
+...+ ++|+.|++++|...+..|..++++++|++|++++|.+.+.+|..+. .+++|+.|+|++|. ++.+|.. .
T Consensus 115 ---~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~-~ 188 (487)
T 3oja_A 115 ---SCSRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQ-V 188 (487)
T ss_dssp ---EECCC-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECC-C
T ss_pred ---Ccccc-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-ccccccc-c
Confidence 00111 3788888888888887788888899999999999888887777775 78899999999875 4445543 3
Q ss_pred CCCCccEEEecCccCccccccccCCCCcccceec-ccCCCccccC-CCCCccceeeecccc
Q 048507 1229 PGAKLTRLEISDCNRLEALPKGLHNLKSLQELRI-GVELPSLEED-GLPTNLHSLGIRGNM 1287 (1448)
Q Consensus 1229 ~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~-~~~~~L~~L~l~~n~ 1287 (1448)
.+++|++|+|++|.+.+ +|..+..+++|+.|++ +|.+..+|.. ..+++|+.|++++|+
T Consensus 189 ~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 189 VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred cCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCC
Confidence 47889999999887554 5556778888888887 4555544332 222444444444443
No 78
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.62 E-value=7.6e-15 Score=171.97 Aligned_cols=291 Identities=15% Similarity=0.143 Sum_probs=181.1
Q ss_pred ccCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCcc------CH
Q 048507 186 TEAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDF------DV 259 (1448)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~------~~ 259 (1448)
.+..|+||+++++++.+++..+ +++.|+|++|+|||||++++++.. . .+|+++.... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCH
Confidence 3457999999999999998542 589999999999999999998732 1 7788775442 56
Q ss_pred HHHHHHHHHhccC----------------CCC--CCCCHHHHHHHHHHHhCC-ccEEEEEecCCCCCh------hhHhhh
Q 048507 260 KGLTKTILRSVTK----------------QTI--DDSDLNLLQEELKKKLSQ-KKFLLVLDDVWNENY------NDWVRL 314 (1448)
Q Consensus 260 ~~~~~~i~~~l~~----------------~~~--~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~~~------~~~~~l 314 (1448)
..+...+.+.+.. ... ...+..++.+.+.+..+. ++++||+||++.... .++...
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 6666666665432 000 123556666666665543 389999999966321 122222
Q ss_pred cccccCCCCCcEEEEEcCchhhhhc----------c-CC-cceEeCCCCCHHHHHHHHhhcccCC-chhhHHHHHHHHHh
Q 048507 315 SRPFEAGAPGSKIIVTTRNQEVADI----------M-GT-ASAYQLKKLSIDDCLAVVAQHSLGS-DKLLEEIGKKIVAK 381 (1448)
Q Consensus 315 ~~~l~~~~~gs~ilvTtR~~~v~~~----------~-~~-~~~~~l~~l~~~~a~~l~~~~~~~~-~~~~~~~~~~i~~~ 381 (1448)
...+.....+.++|+|++...+... + +. ...+++.+|+.+|+.+++....... .....+.+.+|++.
T Consensus 155 L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~ 234 (350)
T 2qen_A 155 FAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVEL 234 (350)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHH
T ss_pred HHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 2222222247889999887543111 1 11 2478999999999999987643111 12235678899999
Q ss_pred cCCchHHHHHHHhhhccCCChhHHHH-HHhccccCCCCcccchhhHHHHhhhcC---ChhhHHHHhhhcccCCCceeCHH
Q 048507 382 CDGLPLAAQTLGGLLRGKCDRSDWED-LLSCKIWNLPEERCDIIPALRVSYYYL---SAPLKQCFAYCSLFPKDYEFEEE 457 (1448)
Q Consensus 382 ~~g~PLal~~~~~~l~~~~~~~~w~~-~~~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~k~~f~~~a~fp~~~~i~~~ 457 (1448)
++|+|+++..++..+....+...+.. ..+ .+...+.-.+..+ ++..+..+..+|+ + ..+..
T Consensus 235 tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~~~~~ 299 (350)
T 2qen_A 235 LDGIPGWLVVFGVEYLRNGDFGRAMKRTLE-----------VAKGLIMGELEELRRRSPRYVDILRAIAL---G-YNRWS 299 (350)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHHHHHHHH-----------HHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-CCSHH
T ss_pred hCCCHHHHHHHHHHHhccccHhHHHHHHHH-----------HHHHHHHHHHHHHHhCChhHHHHHHHHHh---C-CCCHH
Confidence 99999999999876432112222211 111 1111122122223 7889999999998 2 23555
Q ss_pred HHHHHHHHcCCCcCCCCCCChHHHHHHHHHHHHhCCcccccCCCcceEE-EeHHHHHHHH
Q 048507 458 EIILLWCASGFLDHKESGNPNEDLGRKFFQELRGRSFFQQSSNNISRFV-MHDLINDLAR 516 (1448)
Q Consensus 458 ~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~-mH~lv~~~a~ 516 (1448)
.+....... . + .........+++.|++.++|...+ ..|. .|++++++.+
T Consensus 300 ~l~~~~~~~-~-----~-~~~~~~~~~~l~~L~~~gli~~~~---~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 300 LIRDYLAVK-G-----T-KIPEPRLYALLENLKKMNWIVEED---NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHT-T-----C-CCCHHHHHHHHHHHHHTTSEEEET---TEEEESSHHHHHHHT
T ss_pred HHHHHHHHH-h-----C-CCCHHHHHHHHHHHHhCCCEEecC---CEEEEecHHHHHHHc
Confidence 554433221 1 0 112355778999999999998653 2455 5888888765
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=3e-15 Score=164.05 Aligned_cols=201 Identities=20% Similarity=0.212 Sum_probs=133.6
Q ss_pred CCCccceeeccCCCCcccccccCCCchhhhccccCCCCccccEEEEecCCCchhh-hhhcccCCccceeeecc-cccccc
Q 048507 1121 TSSLLEELDINSCPSLTCIFSKNELPATLESLEVGNLPESLKSLRVWDCPKLESI-AERLDNNTSLEIIRIAY-CENLKI 1198 (1448)
Q Consensus 1121 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~Ls~-n~~~~~ 1198 (1448)
..++|+.|+++++. ++.+ +. ..+..+ ++|++|++++|..++.+ +..+.++++|++|++++ |.+.+.
T Consensus 29 ~~~~l~~L~l~~n~-l~~i------~~----~~~~~l-~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 29 LPPSTQTLKLIETH-LRTI------PS----HAFSNL-PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp CCTTCCEEEEESCC-CSEE------CT----TTTTTC-TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred CCCcccEEEEeCCc-ceEE------CH----HHccCC-CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 34579999998864 2221 11 012223 49999999999744444 55899999999999999 565555
Q ss_pred cCcccCCCCCccEEEcccCCCccccCCCCCCCCCcc---EEEecCccCccccc-cccCCCCccc-ceec-ccCCCccccC
Q 048507 1199 LPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLT---RLEISDCNRLEALP-KGLHNLKSLQ-ELRI-GVELPSLEED 1272 (1448)
Q Consensus 1199 ~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~---~L~l~~~~~~~~~p-~~l~~l~~L~-~L~l-~~~l~~~~~~ 1272 (1448)
.+..|.++++|++|++++|. ++.+|. +..+++|+ +|++++|+.+..+| ..|.++++|+ +|++ ++.+..++..
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~ 174 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGY 174 (239)
T ss_dssp CTTSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTT
T ss_pred CHHHhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHh
Confidence 55778999999999999975 556887 77778887 99999994555555 4588899998 8888 5555554432
Q ss_pred CCCCccceeeecccccccccccccCCccccCCCccEEEEecCCCcCccccccccccCCCCCCC-CCcCeEEEccCCCCcc
Q 048507 1273 GLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDMVSFPLEDKRLGTALPLP-ASLTTLWIYNFPNLER 1351 (1448)
Q Consensus 1273 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~p~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~ 1351 (1448)
.+.. ++|++|++++|. .+..+|. ..+..+ ++|+.|++++ +.++.
T Consensus 175 --------------------------~~~~-~~L~~L~L~~n~-~l~~i~~------~~~~~l~~~L~~L~l~~-N~l~~ 219 (239)
T 2xwt_C 175 --------------------------AFNG-TKLDAVYLNKNK-YLTVIDK------DAFGGVYSGPSLLDVSQ-TSVTA 219 (239)
T ss_dssp --------------------------TTTT-CEEEEEECTTCT-TCCEECT------TTTTTCSBCCSEEECTT-CCCCC
T ss_pred --------------------------hcCC-CCCCEEEcCCCC-CcccCCH------HHhhccccCCcEEECCC-Ccccc
Confidence 2222 455555555531 1233332 124445 6666666666 35666
Q ss_pred ccccccCCCCCCeEeecCCCC
Q 048507 1352 LSSSIVDLQNLTELRLLNCPK 1372 (1448)
Q Consensus 1352 lp~~~~~l~~L~~L~l~~c~~ 1372 (1448)
+|.. .+++|+.|+++++..
T Consensus 220 l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 220 LPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp CCCT--TCTTCSEEECTTC--
T ss_pred CChh--HhccCceeeccCccC
Confidence 7653 677788888877654
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.60 E-value=5.1e-15 Score=166.40 Aligned_cols=201 Identities=18% Similarity=0.106 Sum_probs=130.0
Q ss_pred CCccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEE
Q 048507 1157 LPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRL 1236 (1448)
Q Consensus 1157 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L 1236 (1448)
+|++|++|++++|...+..+..+.++++|++|++++|.+.+..+..+.++++|++|++++|......+..+..+++|++|
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 44689999999988777666688899999999999988777666788889999999999876555445667778899999
Q ss_pred EecCccCccccccccCCCCcccceec-ccCCCccc--c-CCCCCccceeeecccccccccccccCCccccCCCcc----E
Q 048507 1237 EISDCNRLEALPKGLHNLKSLQELRI-GVELPSLE--E-DGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQ----H 1308 (1448)
Q Consensus 1237 ~l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~--~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~----~ 1308 (1448)
++++|...+..+..+.++++|++|++ ++.+..+. . ....++|+.|++++|... ...+..+..+++|+ +
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ----SIYCTDLRVLHQMPLLNLS 181 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC----EECGGGGHHHHTCTTCCEE
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC----cCCHHHhhhhhhcccccee
Confidence 99998866655557888888888888 55555422 1 122356666666666422 22333444444444 5
Q ss_pred EEEecCCCcCccccccccccCCCCCCCCCcCeEEEccCCCCcccccc-ccCCCCCCeEeecCCC
Q 048507 1309 LTIEGCDDDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSS-IVDLQNLTELRLLNCP 1371 (1448)
Q Consensus 1309 L~l~~c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~c~ 1371 (1448)
|++++| .+..++... ....+|+.|++++| .++.+|.. +..+++|+.|++++|+
T Consensus 182 L~ls~n--~l~~~~~~~-------~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 182 LDLSLN--PMNFIQPGA-------FKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EECCSS--CCCEECTTS-------SCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred eecCCC--cccccCccc-------cCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence 666653 333333211 12235666666664 34444433 3556666666666544
No 81
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=8.3e-15 Score=170.55 Aligned_cols=221 Identities=19% Similarity=0.160 Sum_probs=175.0
Q ss_pred CCccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCc-ccCCCCCccEEEcccCCCccccCC-CCCCCCCcc
Q 048507 1157 LPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPS-GLHNLRQLQEIEIRRCGNLVSFPK-GGLPGAKLT 1234 (1448)
Q Consensus 1157 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~-~l~~l~~L~~L~L~~~~~l~~lp~-~~~~~~~L~ 1234 (1448)
+|+++++|+|++|.....-+..|.++++|++|+|++|.+.+.+|. .|.++++|.++.+.+++.+..++. .+..+++|+
T Consensus 28 l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 28 LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 456899999999877655556899999999999999998887764 578899998877766677777754 456789999
Q ss_pred EEEecCccCccccccccCCCCcccceec--ccCCCccccCCC---CCccceeeecccccccccccccCCccccCCCccEE
Q 048507 1235 RLEISDCNRLEALPKGLHNLKSLQELRI--GVELPSLEEDGL---PTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHL 1309 (1448)
Q Consensus 1235 ~L~l~~~~~~~~~p~~l~~l~~L~~L~l--~~~l~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L 1309 (1448)
+|++++|......+..+.....+..|++ .+.+..++...+ ...++.|++++|..- ..... ....++|++|
T Consensus 108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~----~i~~~-~f~~~~L~~l 182 (350)
T 4ay9_X 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ----EIHNS-AFNGTQLDEL 182 (350)
T ss_dssp EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC----EECTT-SSTTEEEEEE
T ss_pred cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc----CCChh-hccccchhHH
Confidence 9999998866555555667777888888 356777766543 467899999999632 33333 3356789999
Q ss_pred EEecCCCcCccccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCCCCCCccccccee
Q 048507 1310 TIEGCDDDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFPEKGLPSSLLQLS 1389 (1448)
Q Consensus 1310 ~l~~c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~ 1389 (1448)
++++| +.+..+|.+ .|..+++|+.|++++| .++.+|. ..+..|++|.+.+|++++.+|....+++|+.++
T Consensus 183 ~l~~~-n~l~~i~~~------~f~~l~~L~~LdLs~N-~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~ 252 (350)
T 4ay9_X 183 NLSDN-NNLEELPND------VFHGASGPVILDISRT-RIHSLPS--YGLENLKKLRARSTYNLKKLPTLEKLVALMEAS 252 (350)
T ss_dssp ECTTC-TTCCCCCTT------TTTTEECCSEEECTTS-CCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEE
T ss_pred hhccC-CcccCCCHH------HhccCcccchhhcCCC-CcCccCh--hhhccchHhhhccCCCcCcCCCchhCcChhhCc
Confidence 99985 677888754 3688999999999995 7999997 457899999999999999999866788999999
Q ss_pred ccC
Q 048507 1390 IYR 1392 (1448)
Q Consensus 1390 i~~ 1392 (1448)
+.+
T Consensus 253 l~~ 255 (350)
T 4ay9_X 253 LTY 255 (350)
T ss_dssp CSC
T ss_pred CCC
Confidence 875
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.59 E-value=2.1e-14 Score=161.67 Aligned_cols=111 Identities=24% Similarity=0.211 Sum_probs=78.9
Q ss_pred CccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEE
Q 048507 1158 PESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLE 1237 (1448)
Q Consensus 1158 ~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~ 1237 (1448)
|++++.|++++|...+..+..+.++++|++|++++|.+.+.. .. ..+++|++|++++| .++.+|..+..+++|++|+
T Consensus 30 ~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-VD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLD 106 (290)
T ss_dssp CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE-CC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEE
T ss_pred CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc-CC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEE
Confidence 457888888888877777777888888888888887765533 22 67788888888875 4557777777778888888
Q ss_pred ecCccCccccccccCCCCcccceec-ccCCCcccc
Q 048507 1238 ISDCNRLEALPKGLHNLKSLQELRI-GVELPSLEE 1271 (1448)
Q Consensus 1238 l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~ 1271 (1448)
+++|.+.+..|..|.++++|++|++ +|.+..++.
T Consensus 107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~ 141 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141 (290)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT
T ss_pred CCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh
Confidence 8887765554566777777777777 455544443
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.57 E-value=5.7e-14 Score=156.96 Aligned_cols=178 Identities=20% Similarity=0.219 Sum_probs=93.0
Q ss_pred CccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCC-CCCCCCCccEE
Q 048507 1158 PESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPK-GGLPGAKLTRL 1236 (1448)
Q Consensus 1158 ~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~-~~~~~~~L~~L 1236 (1448)
|+++++|++++|...+..+..+.++++|++|++++|.+....+..+..+++|++|++++|. ++.+|. .+..+++|++|
T Consensus 36 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 36 PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEE
T ss_pred CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEE
Confidence 3466666666666555444566666666666666665554334445566666666666654 333433 23445666666
Q ss_pred EecCccCccccccccCCCCcccceec-ccCCCccccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecCC
Q 048507 1237 EISDCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCD 1315 (1448)
Q Consensus 1237 ~l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 1315 (1448)
++++|...+..|..+..+++|++|++ ++.+..+ +...+..+++|++|++++|
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--------------------------~~~~~~~l~~L~~L~L~~n- 167 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL--------------------------PKGVFDKLTSLKELRLYNN- 167 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC--------------------------CTTTTTTCTTCCEEECCSS-
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc--------------------------CHhHccCCcccceeEecCC-
Confidence 66666544444444555555555555 2322222 2233455555666666553
Q ss_pred CcCccccccccccCCCCCCCCCcCeEEEccCCCCccccc-cccCCCCCCeEeecCCC
Q 048507 1316 DDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSS-SIVDLQNLTELRLLNCP 1371 (1448)
Q Consensus 1316 ~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~ 1371 (1448)
.+..+|. ..+..+++|+.|++++| .++.+|. .+..+++|+.|++++|+
T Consensus 168 -~l~~~~~------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 168 -QLKRVPE------GAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp -CCSCCCT------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -cCcEeCh------hHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 2333332 12344555555555553 3444443 24455556666665544
No 84
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.57 E-value=1.6e-14 Score=162.28 Aligned_cols=207 Identities=19% Similarity=0.197 Sum_probs=159.4
Q ss_pred hhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEecCccCccccccccC
Q 048507 1173 ESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEISDCNRLEALPKGLH 1252 (1448)
Q Consensus 1173 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~p~~l~ 1252 (1448)
..+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|......+..+..+++|++|++++|...+..|..+.
T Consensus 20 ~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 20 YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (276)
T ss_dssp SSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred cccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence 34554332 5799999999988877777899999999999999855443344677799999999999988777778899
Q ss_pred CCCcccceec-ccCCCccccC--CCCCccceeeecccccccccccccCCccccCCCccEEEEecCCCcCccccccccccC
Q 048507 1253 NLKSLQELRI-GVELPSLEED--GLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDMVSFPLEDKRLG 1329 (1448)
Q Consensus 1253 ~l~~L~~L~l-~~~l~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~p~~~~~~~ 1329 (1448)
++++|++|++ .+.+..++.. ...++|+.|++++|... ....+..+.++++|++|++++| .+..++...
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~l~~~~~~l~~L~~L~Ls~N--~l~~~~~~~---- 168 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ---SFKLPEYFSNLTNLEHLDLSSN--KIQSIYCTD---- 168 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC---CCCCCGGGGGCTTCCEEECCSS--CCCEECGGG----
T ss_pred CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccc---eecCchhhccCCCCCEEECCCC--CCCcCCHHH----
Confidence 9999999999 6777777653 34689999999999632 1123668899999999999995 444444322
Q ss_pred CCCCCCCCcC----eEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCCCCC--CcccccceeccCCc
Q 048507 1330 TALPLPASLT----TLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFPEKG--LPSSLLQLSIYRCP 1394 (1448)
Q Consensus 1330 ~~~~~~~~L~----~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~--~~~~L~~L~i~~c~ 1394 (1448)
+..+++|+ .|++++| .+..+|.......+|+.|++++|. ++.+|... ..++|+.|++++||
T Consensus 169 --~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 169 --LRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp --GHHHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred --hhhhhhccccceeeecCCC-cccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCc
Confidence 33344454 8999995 677777766666799999999965 88888753 47899999999754
No 85
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.57 E-value=1.9e-14 Score=172.64 Aligned_cols=311 Identities=12% Similarity=0.036 Sum_probs=184.8
Q ss_pred cCeEeccchhHHHHHHHH-hcCCCCCCCCcEEEEE--EcCCCCcHHHHHHHHHcCccccc---cc-ceEEEEEeCCccCH
Q 048507 187 EAQVYGRETEKKDVVELL-LRDDLSNDGGFSVIPI--IGMGGLGKTTLAQLVYNDKRVQD---HF-DLKAWTCVSDDFDV 259 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vv~I--~G~gGiGKTtLa~~v~~~~~~~~---~f-~~~~wv~~~~~~~~ 259 (1448)
+..|+||+++++++.+++ ...........+.+.| +|++|+||||||+++++...... .+ ..++|+++....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999999988 4321100013456667 99999999999999997432110 11 24678888777788
Q ss_pred HHHHHHHHHhccCCCC-CCCCHHHHHHHHHHHhC--CccEEEEEecCCCCC------hhhHhhhcccccCC---C--CCc
Q 048507 260 KGLTKTILRSVTKQTI-DDSDLNLLQEELKKKLS--QKKFLLVLDDVWNEN------YNDWVRLSRPFEAG---A--PGS 325 (1448)
Q Consensus 260 ~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~------~~~~~~l~~~l~~~---~--~gs 325 (1448)
..++..++++++.... ...+...+.+.+.+.+. +++++||+||++... ...+..+...+... + .+.
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 8999999998865432 13345566666666664 679999999996531 23333333333221 2 345
Q ss_pred EEEEEcCchhhhhcc--------C-CcceEeCCCCCHHHHHHHHhhcc---cCCchhhHHHHHHHHHhcC------CchH
Q 048507 326 KIIVTTRNQEVADIM--------G-TASAYQLKKLSIDDCLAVVAQHS---LGSDKLLEEIGKKIVAKCD------GLPL 387 (1448)
Q Consensus 326 ~ilvTtR~~~v~~~~--------~-~~~~~~l~~l~~~~a~~l~~~~~---~~~~~~~~~~~~~i~~~~~------g~PL 387 (1448)
.+|+||+...+...+ . ....+++.+++.++++++|...+ +......++.+..|++.++ |.|.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~ 260 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSAR 260 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHH
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHH
Confidence 588888765432111 1 11239999999999999997543 2222234567888999999 9997
Q ss_pred HHHHHHhhh---c---cC--CChhHHHHHHhccccCCCCcccchhhHHHHhhhcCChhhHHHHhhhcccC--CCceeCHH
Q 048507 388 AAQTLGGLL---R---GK--CDRSDWEDLLSCKIWNLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFP--KDYEFEEE 457 (1448)
Q Consensus 388 al~~~~~~l---~---~~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp--~~~~i~~~ 457 (1448)
.+..+.... . +. -+.+.+..+...... ...+.-++..||++.+.++..++.+. .+..++..
T Consensus 261 ~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~ 331 (412)
T 1w5s_A 261 RAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLIAEATLGGMEWINAG 331 (412)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHH
Confidence 655543321 1 11 112333333321100 12334467789999999999898753 23345555
Q ss_pred HHHHHHH--H-cCCCcCCCCCCChHHHHHHHHHHHHhCCcccccC---CCcceEEEeHH
Q 048507 458 EIILLWC--A-SGFLDHKESGNPNEDLGRKFFQELRGRSFFQQSS---NNISRFVMHDL 510 (1448)
Q Consensus 458 ~li~~w~--~-~g~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~---~~~~~~~mH~l 510 (1448)
.+...+. + . ... ...........+++.|++.++|.... +...+|.+|.+
T Consensus 332 ~~~~~~~~~~~~-~~~---~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l 386 (412)
T 1w5s_A 332 LLRQRYEDASLT-MYN---VKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRL 386 (412)
T ss_dssp HHHHHHHHHHHH-HSC---CCCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEE
T ss_pred HHHHHHHHHHHh-hcC---CCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEe
Confidence 5544332 2 1 110 01112345678899999999997643 22334545543
No 86
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.56 E-value=5.3e-14 Score=157.16 Aligned_cols=197 Identities=21% Similarity=0.248 Sum_probs=142.4
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCC-CCCCCccEEEe
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGG-LPGAKLTRLEI 1238 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~-~~~~~L~~L~l 1238 (1448)
+.+.++++++... .+|..+. ++|+.|++++|.+.+..+..|.++++|++|+|++|. ++.+|... ..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEEC
Confidence 4667777766544 4554433 578888888887776666678888888888888864 45666554 55788888888
Q ss_pred cCccCccccccccCCCCcccceecccCCCccccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecCCCcC
Q 048507 1239 SDCNRLEALPKGLHNLKSLQELRIGVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDM 1318 (1448)
Q Consensus 1239 ~~~~~~~~~p~~l~~l~~L~~L~l~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~ 1318 (1448)
++|...+..+..+..+++|++|++ ++|. .....+..|..+++|++|++++| .+
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l---------------------~~n~----l~~~~~~~~~~l~~L~~L~Ls~n--~l 145 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRL---------------------DRNQ----LKSLPPRVFDSLTKLTYLSLGYN--EL 145 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEEC---------------------CSSC----CCCCCTTTTTTCTTCCEEECCSS--CC
T ss_pred CCCcCCcCCHhHcccccCCCEEEC---------------------CCCc----cCeeCHHHhCcCcCCCEEECCCC--cC
Confidence 887755544455666777666666 3332 12334456788999999999995 45
Q ss_pred ccccccccccCCCCCCCCCcCeEEEccCCCCccccc-cccCCCCCCeEeecCCCCCCcCCCCCC--cccccceeccCCch
Q 048507 1319 VSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSS-SIVDLQNLTELRLLNCPKLKYFPEKGL--PSSLLQLSIYRCPL 1395 (1448)
Q Consensus 1319 ~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~--~~~L~~L~i~~c~~ 1395 (1448)
..+|.. .+..+++|+.|++++| .+..+|. .+..+++|++|++++| .++.+|...+ .++|+.|++++||.
T Consensus 146 ~~~~~~------~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 146 QSLPKG------VFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCCCTT------TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CccCHh------HccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCe
Confidence 555532 3678899999999996 5666665 5788999999999996 5888887533 68999999999873
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=166.38 Aligned_cols=202 Identities=15% Similarity=0.064 Sum_probs=122.9
Q ss_pred cccEEEEecCCCchhhhhhc--ccCCccceeeecccccccccC----cccCCCCCccEEEcccCCCccccCCCCCCCCCc
Q 048507 1160 SLKSLRVWDCPKLESIAERL--DNNTSLEIIRIAYCENLKILP----SGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKL 1233 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~--~~l~~L~~L~Ls~n~~~~~~p----~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L 1233 (1448)
+|++|++++|...+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|+|++|......|..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 57788888877777777666 778888888888877766444 234467778888887776544445566667778
Q ss_pred cEEEecCccCccc--cc--cccCCCCcccceec-ccCCCccccCCCCCccceeeecccccccccccccCCccccCCCccE
Q 048507 1234 TRLEISDCNRLEA--LP--KGLHNLKSLQELRI-GVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQH 1308 (1448)
Q Consensus 1234 ~~L~l~~~~~~~~--~p--~~l~~l~~L~~L~l-~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~ 1308 (1448)
++|++++|+..+. ++ ..+..+++|++|++ +|.+..++. .....+..+++|++
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-----------------------~~~~l~~~l~~L~~ 228 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG-----------------------VCAALAAAGVQPHS 228 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH-----------------------HHHHHHHHTCCCSS
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH-----------------------HHHHHHhcCCCCCE
Confidence 8888887775542 22 22355666666666 333332221 00112345566777
Q ss_pred EEEecCCCcCccc-cccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCCCCCCcccccc
Q 048507 1309 LTIEGCDDDMVSF-PLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFPEKGLPSSLLQ 1387 (1448)
Q Consensus 1309 L~l~~c~~~~~~~-p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~ 1387 (1448)
|++++| .+..+ |... ..+..+++|+.|++++| .++.+|..+. ++|+.|++++|+ ++.+|....+++|+.
T Consensus 229 L~Ls~N--~l~~~~p~~~----~~~~~~~~L~~L~Ls~N-~l~~lp~~~~--~~L~~L~Ls~N~-l~~~~~~~~l~~L~~ 298 (310)
T 4glp_A 229 LDLSHN--SLRATVNPSA----PRCMWSSALNSLNLSFA-GLEQVPKGLP--AKLRVLDLSSNR-LNRAPQPDELPEVDN 298 (310)
T ss_dssp EECTTS--CCCCCCCSCC----SSCCCCTTCCCEECCSS-CCCSCCSCCC--SCCSCEECCSCC-CCSCCCTTSCCCCSC
T ss_pred EECCCC--CCCccchhhH----HhccCcCcCCEEECCCC-CCCchhhhhc--CCCCEEECCCCc-CCCCchhhhCCCccE
Confidence 777664 22222 3221 11122367777777774 4557776553 677778877754 666665455677777
Q ss_pred eeccCCc
Q 048507 1388 LSIYRCP 1394 (1448)
Q Consensus 1388 L~i~~c~ 1394 (1448)
|++++|+
T Consensus 299 L~L~~N~ 305 (310)
T 4glp_A 299 LTLDGNP 305 (310)
T ss_dssp EECSSTT
T ss_pred EECcCCC
Confidence 8877775
No 88
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.54 E-value=5e-15 Score=136.89 Aligned_cols=79 Identities=23% Similarity=0.387 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHhc--ccCCHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 048507 12 SVDLLVNKLASVGIRLFPRQDQIRADLMKWKTMLLKIKAVLDDAEEK--RTTDWSVKLWLGDLQNLAYDVEDLLDEFQTE 89 (1448)
Q Consensus 12 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~--~~~~~~~~~wl~~lr~~~yd~ed~ld~~~~~ 89 (1448)
+++.+++||.+....|+....||++++++|+++|++|++||.||+.+ +..+..++.|+++|||+|||+|||||+|.++
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777888778899999999999999999999999999999987 5579999999999999999999999999987
Q ss_pred H
Q 048507 90 A 90 (1448)
Q Consensus 90 ~ 90 (1448)
.
T Consensus 82 ~ 82 (115)
T 3qfl_A 82 V 82 (115)
T ss_dssp H
T ss_pred h
Confidence 6
No 89
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.54 E-value=8.8e-14 Score=163.46 Aligned_cols=290 Identities=12% Similarity=0.091 Sum_probs=172.9
Q ss_pred ccCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCc-----cCHH
Q 048507 186 TEAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDD-----FDVK 260 (1448)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~ 260 (1448)
.+..|+||+++++++.+ +. . +++.|+|++|+|||+|++++++.. .. ..+|+++... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~------~---~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR------A---PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC------S---SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hc------C---CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCCHH
Confidence 34579999999999999 72 1 589999999999999999998742 21 2578887643 3444
Q ss_pred HHHHHHHHhccC-------------C-------CC---------CCCCHHHHHHHHHHHhCCccEEEEEecCCCCCh---
Q 048507 261 GLTKTILRSVTK-------------Q-------TI---------DDSDLNLLQEELKKKLSQKKFLLVLDDVWNENY--- 308 (1448)
Q Consensus 261 ~~~~~i~~~l~~-------------~-------~~---------~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--- 308 (1448)
..+..+.+.+.. . .. .......+.+.+.+..+ ++++||+||++..+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 444444433210 0 00 12345555555554433 499999999965321
Q ss_pred hhHhhhcccccCCCCCcEEEEEcCchhhhhc----------c-CC-cceEeCCCCCHHHHHHHHhhccc--CCchhhHHH
Q 048507 309 NDWVRLSRPFEAGAPGSKIIVTTRNQEVADI----------M-GT-ASAYQLKKLSIDDCLAVVAQHSL--GSDKLLEEI 374 (1448)
Q Consensus 309 ~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~----------~-~~-~~~~~l~~l~~~~a~~l~~~~~~--~~~~~~~~~ 374 (1448)
.++..+...+.....+.++|+|+|....... + +. ...+++.+|+.+|+.+++..... +.... +
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~--~- 231 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK--D- 231 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC--C-
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC--c-
Confidence 1222222222222246789999997643211 1 11 25789999999999999986431 11111 1
Q ss_pred HHHHHHhcCCchHHHHHHHhhhccCCChhHHHHHHhccccCCCCcccchhhHHH-Hhhh--cCChhhHHHHhhhcccCCC
Q 048507 375 GKKIVAKCDGLPLAAQTLGGLLRGKCDRSDWEDLLSCKIWNLPEERCDIIPALR-VSYY--YLSAPLKQCFAYCSLFPKD 451 (1448)
Q Consensus 375 ~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~k~~f~~~a~fp~~ 451 (1448)
..+|++.++|+|+++..++..+........|..-.... ....+...+. +.++ .+++..+..+..+|+ +
T Consensus 232 ~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g 302 (357)
T 2fna_A 232 YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEY------AKKLILKEFENFLHGREIARKRYLNIMRTLSK---C 302 (357)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHH------HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---C
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHH------HHHHHHHHHHHHhhccccccHHHHHHHHHHHc---C
Confidence 17899999999999999987764332333332111000 0001111122 1111 678899999999998 2
Q ss_pred ceeCHHHHHHHHH-HcCCCcCCCCCCChHHHHHHHHHHHHhCCcccccCCCcceEE-EeHHHHHHH
Q 048507 452 YEFEEEEIILLWC-ASGFLDHKESGNPNEDLGRKFFQELRGRSFFQQSSNNISRFV-MHDLINDLA 515 (1448)
Q Consensus 452 ~~i~~~~li~~w~-~~g~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~-mH~lv~~~a 515 (1448)
. +...+..... ..|. .........+++.|++.++|...+ ..|. .|++++++.
T Consensus 303 ~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~l 356 (357)
T 2fna_A 303 G--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLAF 356 (357)
T ss_dssp B--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHHT
T ss_pred C--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHhh
Confidence 2 4444433211 1221 012345678999999999998754 2455 588988764
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.53 E-value=3.7e-14 Score=158.53 Aligned_cols=177 Identities=15% Similarity=0.073 Sum_probs=90.7
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEec
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEIS 1239 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~ 1239 (1448)
+|++|++++|...+ + ..+..+++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|+++
T Consensus 64 ~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 141 (272)
T 3rfs_A 64 NVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA 141 (272)
T ss_dssp TCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECC
Confidence 55555555554433 1 245555555555555555544444445555555555555543322222223445555555555
Q ss_pred CccCccccccccCCCCcccceecccCCCccccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecCCCcCc
Q 048507 1240 DCNRLEALPKGLHNLKSLQELRIGVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDMV 1319 (1448)
Q Consensus 1240 ~~~~~~~~p~~l~~l~~L~~L~l~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~ 1319 (1448)
+|...+..|..+..+++|++|++ ++|. .....+..+..+++|++|++++| .+.
T Consensus 142 ~n~l~~~~~~~~~~l~~L~~L~l---------------------~~n~----l~~~~~~~~~~l~~L~~L~L~~N--~l~ 194 (272)
T 3rfs_A 142 HNQLQSLPKGVFDKLTNLTELDL---------------------SYNQ----LQSLPEGVFDKLTQLKDLRLYQN--QLK 194 (272)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEEC---------------------CSSC----CCCCCTTTTTTCTTCCEEECCSS--CCS
T ss_pred CCccCccCHHHhccCccCCEEEC---------------------CCCC----cCccCHHHhcCCccCCEEECCCC--cCC
Confidence 55443333333445555555544 4442 11233344566667777777664 233
Q ss_pred cccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCCC
Q 048507 1320 SFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFPE 1378 (1448)
Q Consensus 1320 ~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~ 1378 (1448)
.++. ..+..+++|+.|++++|+.. +.++.|+.|+++.+...+.+|.
T Consensus 195 ~~~~------~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 195 SVPD------GVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp CCCT------TTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBC
T ss_pred ccCH------HHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccC
Confidence 3332 22456677777777776432 3345677777776665556665
No 91
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.51 E-value=1.5e-13 Score=154.63 Aligned_cols=192 Identities=18% Similarity=0.146 Sum_probs=117.1
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEec
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEIS 1239 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~ 1239 (1448)
++++++++++.. ..+|..+. ++++.|++++|.+.+..|..+..+++|+.|+|++|. ++.++.. ..+++|++|+++
T Consensus 11 ~l~~l~~~~~~l-~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 11 SHLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp TCCEEECTTSCC-SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEEECC
T ss_pred CccEEECCCCCC-CcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEEECC
Confidence 788888877654 45555443 689999999999888778889999999999999965 5566654 678899999999
Q ss_pred CccCccccccccCCCCcccceec-ccCCCccccCCC--CCccceeeecccccccccccccCCccccCCCccEEEEecCCC
Q 048507 1240 DCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGL--PTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDD 1316 (1448)
Q Consensus 1240 ~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 1316 (1448)
+|. +..+|..+..+++|++|++ .|.+..++...+ +++|+.|++++|.. ...++..|..+++|+.|++++|
T Consensus 86 ~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l----~~~~~~~~~~l~~L~~L~L~~N-- 158 (290)
T 1p9a_G 86 HNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL----KTLPPGLLTPTPKLEKLSLANN-- 158 (290)
T ss_dssp SSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC----CCCCTTTTTTCTTCCEEECTTS--
T ss_pred CCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCC----CccChhhcccccCCCEEECCCC--
Confidence 976 4578888888888888888 555555543222 34455555555431 1223333444444444444442
Q ss_pred cCccccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCC
Q 048507 1317 DMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNC 1370 (1448)
Q Consensus 1317 ~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c 1370 (1448)
.+..+|.. .+..+++|+.|++++ +.++.+|..+..+++|+.|+++++
T Consensus 159 ~l~~l~~~------~~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 159 NLTELPAG------LLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp CCSCCCTT------TTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSC
T ss_pred cCCccCHH------HhcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCC
Confidence 23333321 123344444444444 233444444444444444444443
No 92
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.50 E-value=7.5e-14 Score=156.03 Aligned_cols=93 Identities=12% Similarity=-0.037 Sum_probs=73.5
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEec
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEIS 1239 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~ 1239 (1448)
+|++|++++|...+..+..++.+++|++|++++|.+.+..|..+..+++|+.|++++|+... .+++|+.|+++
T Consensus 158 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~ 230 (272)
T 3rfs_A 158 NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEW 230 (272)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHH
T ss_pred cCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHH
Confidence 78888888887776666677888899999999888887777778888999999999886543 34578888888
Q ss_pred CccCccccccccCCCCcccc
Q 048507 1240 DCNRLEALPKGLHNLKSLQE 1259 (1448)
Q Consensus 1240 ~~~~~~~~p~~l~~l~~L~~ 1259 (1448)
.|...|.+|.+++.+.....
T Consensus 231 ~n~~~g~ip~~~~~~~~~~~ 250 (272)
T 3rfs_A 231 INKHSGVVRNSAGSVAPDSA 250 (272)
T ss_dssp HHHTGGGBBCTTSCBCGGGS
T ss_pred HHhCCCcccCcccccCCCCC
Confidence 88888888888877665443
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.49 E-value=4.2e-13 Score=156.10 Aligned_cols=165 Identities=18% Similarity=0.109 Sum_probs=94.0
Q ss_pred cCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCC-CCC-CCccEEEecCccCcc
Q 048507 1168 DCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGG-LPG-AKLTRLEISDCNRLE 1245 (1448)
Q Consensus 1168 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~-~~~-~~L~~L~l~~~~~~~ 1245 (1448)
.|+.....|..|..+++|++|++++|.+....+..+....++..|++.+++.+..+|... ..+ ..++.|++++|. +.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQ 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CC
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-cc
Confidence 333333334455555555555555554444333334444445555555544444444322 111 234555555543 23
Q ss_pred ccccccCCCCcccceecccCCCccccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecCCCcCccccccc
Q 048507 1246 ALPKGLHNLKSLQELRIGVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDMVSFPLED 1325 (1448)
Q Consensus 1246 ~~p~~l~~l~~L~~L~l~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~p~~~ 1325 (1448)
.+|......+ +|+.|++++|..+ ...+...|..+++|++|++++ |.+..+|..
T Consensus 168 ~i~~~~f~~~---------------------~L~~l~l~~~n~l---~~i~~~~f~~l~~L~~LdLs~--N~l~~lp~~- 220 (350)
T 4ay9_X 168 EIHNSAFNGT---------------------QLDELNLSDNNNL---EELPNDVFHGASGPVILDISR--TRIHSLPSY- 220 (350)
T ss_dssp EECTTSSTTE---------------------EEEEEECTTCTTC---CCCCTTTTTTEECCSEEECTT--SCCCCCCSS-
T ss_pred CCChhhcccc---------------------chhHHhhccCCcc---cCCCHHHhccCcccchhhcCC--CCcCccChh-
Confidence 3443333333 4555555544322 234445678888999999988 467777743
Q ss_pred cccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecC
Q 048507 1326 KRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLN 1369 (1448)
Q Consensus 1326 ~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~ 1369 (1448)
.+.+|+.|.+.+++.++.+|. +.++++|+.+++.+
T Consensus 221 --------~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 221 --------GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp --------SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred --------hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 367788888888888999984 78888999988865
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.49 E-value=1.3e-13 Score=157.02 Aligned_cols=192 Identities=17% Similarity=0.189 Sum_probs=119.2
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEec
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEIS 1239 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~ 1239 (1448)
+|++|++++|.... ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|. ++.++ .+..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECT
T ss_pred CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEECC
Confidence 66677776664433 33 46667777777777765544333 6677777777777754 44454 35556777777777
Q ss_pred CccCccccccccCCCCcccceec-ccCCCccccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecCCCcC
Q 048507 1240 DCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDM 1318 (1448)
Q Consensus 1240 ~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~ 1318 (1448)
+|...+ +|. +..+++|++|++ ++.+..++....+++|+.|++++|... ... .+..+++|++|++++| .+
T Consensus 116 ~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~----~~~--~l~~l~~L~~L~l~~n--~l 185 (308)
T 1h6u_A 116 STQITD-VTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS----DLT--PLANLSKLTTLKADDN--KI 185 (308)
T ss_dssp TSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC----CCG--GGTTCTTCCEEECCSS--CC
T ss_pred CCCCCC-chh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCC----CCh--hhcCCCCCCEEECCCC--cc
Confidence 766433 442 677777777777 555555555444567777777776422 111 2667777777777774 33
Q ss_pred ccccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCCC
Q 048507 1319 VSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFPE 1378 (1448)
Q Consensus 1319 ~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~ 1378 (1448)
..++. +..+++|+.|++++| .+..++. +..+++|+.|++++|+ ++..|.
T Consensus 186 ~~~~~--------l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 186 SDISP--------LASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp CCCGG--------GGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEEEE-EECCCE
T ss_pred CcChh--------hcCCCCCCEEEccCC-ccCcccc-ccCCCCCCEEEccCCe-eecCCe
Confidence 34432 356677777887774 4555553 6777788888887755 555443
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.48 E-value=1.5e-13 Score=156.48 Aligned_cols=192 Identities=18% Similarity=0.200 Sum_probs=156.9
Q ss_pred cccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEecCccCccccccccCCCCccc
Q 048507 1179 LDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEISDCNRLEALPKGLHNLKSLQ 1258 (1448)
Q Consensus 1179 ~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 1258 (1448)
...+++|++|++++|.+.. +| .+..+++|++|++++|. +..++. +..+++|++|++++|.. ..+| .+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~l-~~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNPL-KNVS-AIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCCC-SCCG-GGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCcC-CCch-hhcCCCCCC
Confidence 4567899999999987654 55 68889999999999974 556666 77899999999999885 4455 689999999
Q ss_pred ceec-ccCCCccccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecCCCcCccccccccccCCCCCCCCC
Q 048507 1259 ELRI-GVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDMVSFPLEDKRLGTALPLPAS 1337 (1448)
Q Consensus 1259 ~L~l-~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~p~~~~~~~~~~~~~~~ 1337 (1448)
+|++ ++.+..++....+++|+.|++++|... .. ..+..+++|++|++++| .+..++. +..+++
T Consensus 111 ~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~----~~--~~l~~l~~L~~L~l~~n--~l~~~~~--------l~~l~~ 174 (308)
T 1h6u_A 111 TLDLTSTQITDVTPLAGLSNLQVLYLDLNQIT----NI--SPLAGLTNLQYLSIGNA--QVSDLTP--------LANLSK 174 (308)
T ss_dssp EEECTTSCCCCCGGGTTCTTCCEEECCSSCCC----CC--GGGGGCTTCCEEECCSS--CCCCCGG--------GTTCTT
T ss_pred EEECCCCCCCCchhhcCCCCCCEEECCCCccC----cC--ccccCCCCccEEEccCC--cCCCChh--------hcCCCC
Confidence 9999 778888877777899999999999643 22 23889999999999996 4444442 578899
Q ss_pred cCeEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCCCCCCcccccceeccCCch
Q 048507 1338 LTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFPEKGLPSSLLQLSIYRCPL 1395 (1448)
Q Consensus 1338 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~i~~c~~ 1395 (1448)
|+.|++++| .+..++. +..+++|++|++++|+ ++.++.....++|+.|++++|+.
T Consensus 175 L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 175 LTTLKADDN-KISDISP-LASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CCEEECCSS-CCCCCGG-GGGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEEEEEE
T ss_pred CCEEECCCC-ccCcChh-hcCCCCCCEEEccCCc-cCccccccCCCCCCEEEccCCee
Confidence 999999995 5777775 7899999999999965 77787666689999999999874
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=1.5e-13 Score=157.06 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=15.9
Q ss_pred CCcceeeeccCCCCcccCCC---CCccccceeEecccCC
Q 048507 1017 SSLREIEICGCSSLVSFPEV---ALPAKLRIISINSCDA 1052 (1448)
Q Consensus 1017 ~~L~~L~L~~c~~l~~~~~~---~~~~~L~~L~l~~~~~ 1052 (1448)
++|++|++++|......|.. ..+++|++|++++|..
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i 129 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSW 129 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccc
Confidence 44555555555333333321 2344444555544443
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.45 E-value=7.1e-13 Score=146.19 Aligned_cols=158 Identities=16% Similarity=0.160 Sum_probs=105.4
Q ss_pred CCccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEE
Q 048507 1157 LPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRL 1236 (1448)
Q Consensus 1157 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L 1236 (1448)
+|++++.|++++|...+..+..+.++++|++|++++|.+.+..+..+..+++|++|+|++|......+..+..+++|++|
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEE
Confidence 34588888888888877777778888888888888888777777778888888888888865443333445667888888
Q ss_pred EecCccCccccccccCCCCcccceec-ccCCCccccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecCC
Q 048507 1237 EISDCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCD 1315 (1448)
Q Consensus 1237 ~l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 1315 (1448)
++++|.+.+..+..+..+++|++|++ +|.+..++. ..+..+++|++|++++|
T Consensus 113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------------------------~~~~~l~~L~~L~L~~N- 165 (251)
T 3m19_A 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA--------------------------GAFDKLTNLQTLSLSTN- 165 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------------------------TTTTTCTTCCEEECCSS-
T ss_pred EcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH--------------------------HHcCcCcCCCEEECCCC-
Confidence 88887655444445677777777777 444444333 34555566666666653
Q ss_pred CcCccccccccccCCCCCCCCCcCeEEEccCCC
Q 048507 1316 DDMVSFPLEDKRLGTALPLPASLTTLWIYNFPN 1348 (1448)
Q Consensus 1316 ~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~ 1348 (1448)
.+..+|. ..+..+++|+.|++++|+.
T Consensus 166 -~l~~~~~------~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 166 -QLQSVPH------GAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp -CCSCCCT------TTTTTCTTCCEEECCSCCB
T ss_pred -cCCccCH------HHHhCCCCCCEEEeeCCce
Confidence 3333332 2245556666666666543
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.45 E-value=1.9e-14 Score=167.30 Aligned_cols=81 Identities=15% Similarity=0.098 Sum_probs=38.4
Q ss_pred cccceEEecccCCccccccccCccCCcceeeeccCCCCcc-cCC-CCCccccceeEecccCCCCccchhhccCCCCCcce
Q 048507 993 CRLEYLELNECKGLVKLPQSSLSLSSLREIEICGCSSLVS-FPE-VALPAKLRIISINSCDALKWLPEAWMCDFNSSLEI 1070 (1448)
Q Consensus 993 ~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~-~~~-~~~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~L~~ 1070 (1448)
++++.|++++|...+..+ .+..+++|++|++++|..... ++. ...+++|++|++++|......+..+. .+++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~--~~~~L~~ 146 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA--KNSNLVR 146 (336)
T ss_dssp TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT--TCTTCSE
T ss_pred ccceEEEcCCccccccch-hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh--cCCCCCE
Confidence 466667766654433333 344566666666666542111 221 23345555555555543333333322 2444444
Q ss_pred EEEecC
Q 048507 1071 LSIECC 1076 (1448)
Q Consensus 1071 L~l~~c 1076 (1448)
|++++|
T Consensus 147 L~L~~~ 152 (336)
T 2ast_B 147 LNLSGC 152 (336)
T ss_dssp EECTTC
T ss_pred EECCCC
Confidence 444444
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.43 E-value=1.1e-12 Score=144.48 Aligned_cols=174 Identities=16% Similarity=0.148 Sum_probs=106.3
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEec
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEIS 1239 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~ 1239 (1448)
+.++++++++. +..+|..+. ++|+.|++++|.+.+..+..+.++++|++|+|++|......+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~-l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKS-LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCC-CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCC-ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 45566666543 334554333 577777887777777666677777777777777765444334445667777777777
Q ss_pred CccCccccccccCCCCcccceec-ccCCCccccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecCCCcC
Q 048507 1240 DCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDM 1318 (1448)
Q Consensus 1240 ~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~ 1318 (1448)
+|...+..+..+..+++|++|++ .|.+. ..++..|..+++|++|++++| .+
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--------------------------~~~~~~~~~l~~L~~L~Ls~N--~l 143 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLK--------------------------SLPSGVFDRLTKLKELRLNTN--QL 143 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCC--------------------------CCCTTTTTTCTTCCEEECCSS--CC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCC--------------------------CcChhHhccCCcccEEECcCC--cC
Confidence 77655444455566666666555 22222 223334566777777777774 34
Q ss_pred ccccccccccCCCCCCCCCcCeEEEccCCCCccccc-cccCCCCCCeEeecCCC
Q 048507 1319 VSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSS-SIVDLQNLTELRLLNCP 1371 (1448)
Q Consensus 1319 ~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~ 1371 (1448)
..+|. ..+..+++|+.|+|++| .+..+|. .+..+++|+.|++++|+
T Consensus 144 ~~~~~------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 144 QSIPA------GAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCCCT------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CccCH------HHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 44442 23556677777777774 3444443 56667777777777755
No 100
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.43 E-value=2e-14 Score=167.14 Aligned_cols=199 Identities=14% Similarity=0.155 Sum_probs=102.2
Q ss_pred cccEEEEecCCCchh-hhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCcc--ccCCCCCCCCCccEE
Q 048507 1160 SLKSLRVWDCPKLES-IAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLV--SFPKGGLPGAKLTRL 1236 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~--~lp~~~~~~~~L~~L 1236 (1448)
+|++|++++|...+. ++..+..+++|++|++++|.+.+..+..+..+++|++|++++|..++ .++..+..+++|++|
T Consensus 94 ~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L 173 (336)
T 2ast_B 94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173 (336)
T ss_dssp CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE
Confidence 566666666654433 55556666666666666665555555555556666666666654333 233333445566666
Q ss_pred EecCc-cCccc-cccccCCCC-cccceecccCCCccccCCCCCccceeeecccc-cccccccccCCccccCCCccEEEEe
Q 048507 1237 EISDC-NRLEA-LPKGLHNLK-SLQELRIGVELPSLEEDGLPTNLHSLGIRGNM-EIWKSTIERGRGFHRFSSLQHLTIE 1312 (1448)
Q Consensus 1237 ~l~~~-~~~~~-~p~~l~~l~-~L~~L~l~~~l~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~l~~L~~L~l~ 1312 (1448)
++++| ...+. ++..+..++ +|++| ++++|. .+.. ...+..+.++++|++|+++
T Consensus 174 ~l~~~~~l~~~~~~~~~~~l~~~L~~L---------------------~l~~~~~~~~~--~~l~~~~~~~~~L~~L~l~ 230 (336)
T 2ast_B 174 NLSWCFDFTEKHVQVAVAHVSETITQL---------------------NLSGYRKNLQK--SDLSTLVRRCPNLVHLDLS 230 (336)
T ss_dssp ECCCCTTCCHHHHHHHHHHSCTTCCEE---------------------ECCSCGGGSCH--HHHHHHHHHCTTCSEEECT
T ss_pred cCCCCCCcChHHHHHHHHhcccCCCEE---------------------EeCCCcccCCH--HHHHHHHhhCCCCCEEeCC
Confidence 66665 32221 344444444 44444 444442 1100 1112234556677777777
Q ss_pred cCCCcCccccccccccCCCCCCCCCcCeEEEccCCCCcc-ccccccCCCCCCeEeecCCCCCCcCCCCCC---cccccce
Q 048507 1313 GCDDDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLER-LSSSIVDLQNLTELRLLNCPKLKYFPEKGL---PSSLLQL 1388 (1448)
Q Consensus 1313 ~c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~---~~~L~~L 1388 (1448)
+|.......+ ..+..+++|+.|++++|..+.. -...+.++++|+.|++++| ++..++ ..+|..|
T Consensus 231 ~~~~l~~~~~-------~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L 298 (336)
T 2ast_B 231 DSVMLKNDCF-------QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHL 298 (336)
T ss_dssp TCTTCCGGGG-------GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTS
T ss_pred CCCcCCHHHH-------HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcce
Confidence 6531111111 1234556777777777652211 1123566777777777776 444332 2456667
Q ss_pred eccCC
Q 048507 1389 SIYRC 1393 (1448)
Q Consensus 1389 ~i~~c 1393 (1448)
++++|
T Consensus 299 ~l~~n 303 (336)
T 2ast_B 299 QINCS 303 (336)
T ss_dssp EESCC
T ss_pred EEecc
Confidence 76544
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.38 E-value=2e-12 Score=157.62 Aligned_cols=187 Identities=17% Similarity=0.203 Sum_probs=111.9
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEec
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEIS 1239 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~ 1239 (1448)
+++.|++++|...+ +|..+ +++|++|+|++|.+. .+| ..+++|++|++++|. ++.+|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECC
Confidence 56677776665544 55433 266777777776655 455 346677777777753 344666 433 77777777
Q ss_pred CccCccccccccCCCCcccceec-ccCCCccccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecCCCcC
Q 048507 1240 DCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDM 1318 (1448)
Q Consensus 1240 ~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~ 1318 (1448)
+|.+.+ +|. .+++|+.|++ +|.+..++. .+++|+.|++++|... .. +. +. ++|++|++++| .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~----~l-p~-l~--~~L~~L~Ls~N--~L 192 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLT----FL-PE-LP--ESLEALDVSTN--LL 192 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCS----CC-CC-CC--TTCCEEECCSS--CC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCC----Cc-ch-hh--CCCCEEECcCC--CC
Confidence 766444 655 5667777777 555665554 4567777777777522 22 22 33 77788888774 44
Q ss_pred ccccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCC
Q 048507 1319 VSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFP 1377 (1448)
Q Consensus 1319 ~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp 1377 (1448)
..+|. ... ..+..+..|+.|+|++| .++.+|.++..+++|+.|++++|+.-+.+|
T Consensus 193 ~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 193 ESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp SSCCC-CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred Cchhh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 45553 100 00111222388888874 577788777778888888888876444333
No 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.36 E-value=3.6e-14 Score=168.17 Aligned_cols=39 Identities=15% Similarity=0.080 Sum_probs=21.3
Q ss_pred ccCCccceeeeccccccc----ccCcccCCCCCccEEEcccCC
Q 048507 1180 DNNTSLEIIRIAYCENLK----ILPSGLHNLRQLQEIEIRRCG 1218 (1448)
Q Consensus 1180 ~~l~~L~~L~Ls~n~~~~----~~p~~l~~l~~L~~L~L~~~~ 1218 (1448)
..+++|++|+|++|.+.. .+|..+..+++|++|+|++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 455555556655555444 244455555555555555554
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.35 E-value=2.3e-12 Score=137.49 Aligned_cols=162 Identities=17% Similarity=0.092 Sum_probs=101.9
Q ss_pred CccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCC-CCCCCCccEE
Q 048507 1158 PESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKG-GLPGAKLTRL 1236 (1448)
Q Consensus 1158 ~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~-~~~~~~L~~L 1236 (1448)
+++|++|++++|...+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|. ++.+|.. +..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEE
Confidence 3578888888877665555567778888888888777665555556777788888887764 3444443 4567777777
Q ss_pred EecCccCccccccccCCCCcccceec-ccCCCccccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecCC
Q 048507 1237 EISDCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCD 1315 (1448)
Q Consensus 1237 ~l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 1315 (1448)
++++|...+..+..+..+++|++|++ .|.+.. .++..+..+++|++|++++|.
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~--------------------------~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS--------------------------VPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC--------------------------CCTTTTTTCTTCCEEECCSCC
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCccce--------------------------eCHHHhccCCCccEEEecCCC
Confidence 77777655444444566666666665 333222 223345666777777777641
Q ss_pred CcCccccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCC
Q 048507 1316 DDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQN 1361 (1448)
Q Consensus 1316 ~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~ 1361 (1448)
....+++|+.|+++.|...+.+|.+++.++.
T Consensus 160 ---------------~~~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 160 ---------------WDCTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ---------------BCCCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ---------------eecCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 1134556777777776666677766665544
No 104
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.35 E-value=2.8e-11 Score=143.69 Aligned_cols=293 Identities=14% Similarity=0.058 Sum_probs=180.4
Q ss_pred cCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccc----cccceEEEEEeCCccCHHHH
Q 048507 187 EAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQ----DHFDLKAWTCVSDDFDVKGL 262 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~ 262 (1448)
+..++||+.+++++..++.... .....+.+.|+|++|+||||+|+.+++..... +.-...+|+++....+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPAL--RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGT--SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 3679999999999999885431 12345688999999999999999998743111 01234688888888889999
Q ss_pred HHHHHHhccCCCC-CCCCHHHHHHHHHHHhC--CccEEEEEecCCCCChh-----hHhhhcccccCC--CCCcEEEEEcC
Q 048507 263 TKTILRSVTKQTI-DDSDLNLLQEELKKKLS--QKKFLLVLDDVWNENYN-----DWVRLSRPFEAG--APGSKIIVTTR 332 (1448)
Q Consensus 263 ~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~-----~~~~l~~~l~~~--~~gs~ilvTtR 332 (1448)
+..++.+++.... .......+.+.+.+.+. +++.+||+|+++..... .+..+....... ..+..+|.||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 9999998865432 22345566666666663 56889999999653211 122222222111 34667888887
Q ss_pred chhhhhcc------CC-cceEeCCCCCHHHHHHHHhhcc---cCCchhhHHHHHHHHHhcC---CchH-HHHHHHhhhc-
Q 048507 333 NQEVADIM------GT-ASAYQLKKLSIDDCLAVVAQHS---LGSDKLLEEIGKKIVAKCD---GLPL-AAQTLGGLLR- 397 (1448)
Q Consensus 333 ~~~v~~~~------~~-~~~~~l~~l~~~~a~~l~~~~~---~~~~~~~~~~~~~i~~~~~---g~PL-al~~~~~~l~- 397 (1448)
.......+ .. ...+.+++++.++..+++...+ +......++..+.+++.++ |.|- ++.++..+..
T Consensus 176 ~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~ 255 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEI 255 (387)
T ss_dssp CSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 65322111 11 1478999999999999998763 2222333456677888888 9993 3333322211
Q ss_pred ----cC--CChhHHHHHHhccccCCCCcccchhhHHHHhhhcCChhhHHHHhhhc-ccCCCceeCHHHHHHHH----HHc
Q 048507 398 ----GK--CDRSDWEDLLSCKIWNLPEERCDIIPALRVSYYYLSAPLKQCFAYCS-LFPKDYEFEEEEIILLW----CAS 466 (1448)
Q Consensus 398 ----~~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a-~fp~~~~i~~~~li~~w----~~~ 466 (1448)
+. -+.+.+..++... ....+.-++..++++.+..+..++ ++.....+....+.+.. -..
T Consensus 256 a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (387)
T 2v1u_A 256 AERRREERVRREHVYSARAEI----------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTL 325 (387)
T ss_dssp HHHTTCSCBCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCcCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhc
Confidence 11 1344555444321 122455677889998888877776 34322345555333322 112
Q ss_pred CCCcCCCCCCChHHHHHHHHHHHHhCCcccc
Q 048507 467 GFLDHKESGNPNEDLGRKFFQELRGRSFFQQ 497 (1448)
Q Consensus 467 g~~~~~~~~~~~~~~~~~~~~~L~~~sll~~ 497 (1448)
| . .......+..+++.|...+++..
T Consensus 326 ~-~-----~~~~~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 326 G-L-----EHVTLRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp T-C-----CCCCHHHHHHHHHHHHHTTSEEE
T ss_pred C-C-----CCCCHHHHHHHHHHHHhCCCeEE
Confidence 2 1 12234667889999999999986
No 105
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=1.9e-11 Score=144.76 Aligned_cols=287 Identities=13% Similarity=0.035 Sum_probs=178.7
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc----c--cceEEEEEeCCcc-CHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQD----H--FDLKAWTCVSDDF-DVK 260 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~--f~~~~wv~~~~~~-~~~ 260 (1448)
..++||+.+++++.+++.... .....+.+.|+|++|+|||++|+.+++...... . ...++|+++.... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFV--KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHH--TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 679999999999998886521 122346899999999999999999997421110 1 3457888887776 888
Q ss_pred HHHHHHHHhccCCCC--CCCCHHHHHHHHHHHhCCccEEEEEecCCCCCh----hh-HhhhcccccCCCCCcEEEEEcCc
Q 048507 261 GLTKTILRSVTKQTI--DDSDLNLLQEELKKKLSQKKFLLVLDDVWNENY----ND-WVRLSRPFEAGAPGSKIIVTTRN 333 (1448)
Q Consensus 261 ~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----~~-~~~l~~~l~~~~~gs~ilvTtR~ 333 (1448)
.++..++..+..... .......+.+.+.+.+..++.+||+||++.... .. +..+.... .+..+|+||+.
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~ 173 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISND 173 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSS
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECC
Confidence 888888888743222 223345666777777777666999999954321 11 22232222 67889999987
Q ss_pred hhhhhcc------CCcceEeCCCCCHHHHHHHHhhcc---cCCchhhHHHHHHHHHhcC---CchH-HHHHHHhhh--c-
Q 048507 334 QEVADIM------GTASAYQLKKLSIDDCLAVVAQHS---LGSDKLLEEIGKKIVAKCD---GLPL-AAQTLGGLL--R- 397 (1448)
Q Consensus 334 ~~v~~~~------~~~~~~~l~~l~~~~a~~l~~~~~---~~~~~~~~~~~~~i~~~~~---g~PL-al~~~~~~l--~- 397 (1448)
......+ .....+++++++.++..+++...+ +......++..+.|++.++ |.|- |+..+.... .
T Consensus 174 ~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 174 INVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred CchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 5321111 112389999999999999998863 2222333456777888887 8886 444433222 1
Q ss_pred c--CCChhHHHHHHhccccCCCCcccchhhHHHHhhhcCChhhHHHHhhhcccCCCceeCHHHHHHHHHHcCCCcCCCCC
Q 048507 398 G--KCDRSDWEDLLSCKIWNLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKESG 475 (1448)
Q Consensus 398 ~--~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~ 475 (1448)
+ .-+.+.+..++... ....+..+++.|+++.+..+..++....+..+. +......-..| + .
T Consensus 254 ~~~~i~~~~v~~~~~~~----------~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~-----~ 316 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDY----------EQERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-Q-----K 316 (384)
T ss_dssp SSSCCCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-C-----C
T ss_pred CCCccCHHHHHHHHHHH----------hcchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-C-----C
Confidence 1 12355555555421 123466678899988888887777611101111 11111111222 1 1
Q ss_pred CChHHHHHHHHHHHHhCCcccc
Q 048507 476 NPNEDLGRKFFQELRGRSFFQQ 497 (1448)
Q Consensus 476 ~~~~~~~~~~~~~L~~~sll~~ 497 (1448)
........+++..|.+++++..
T Consensus 317 ~~~~~~~~~~l~~L~~~gli~~ 338 (384)
T 2qby_B 317 PLSYRRFSDIISELDMFGIVKI 338 (384)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEE
Confidence 1234567889999999999986
No 106
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.33 E-value=5.8e-14 Score=166.37 Aligned_cols=248 Identities=18% Similarity=0.116 Sum_probs=125.6
Q ss_pred CCcCccEEEEecCCCCcccccccccccccCCccCCCCccceeeccCCC--CcccccccCCCchhhhccc--cCCCCcccc
Q 048507 1087 LPPSLKRLYIEFCDNIRTLTVEEGVQRSSSSRRCTSSLLEELDINSCP--SLTCIFSKNELPATLESLE--VGNLPESLK 1162 (1448)
Q Consensus 1087 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~--~l~~i~~~~~~~~~l~~l~--~~~~~~~L~ 1162 (1448)
.+++|++|++++|. +..... .........+++|++|++++|. .++ +.+|..+..+. +... ++|+
T Consensus 30 ~~~~L~~L~L~~n~-i~~~~~-----~~l~~~l~~~~~L~~L~Ls~~~~~~l~-----~~~~~~~~~l~~~l~~~-~~L~ 97 (386)
T 2ca6_A 30 EDDSVKEIVLSGNT-IGTEAA-----RWLSENIASKKDLEIAEFSDIFTGRVK-----DEIPEALRLLLQALLKC-PKLH 97 (386)
T ss_dssp HCSCCCEEECTTSE-ECHHHH-----HHHHHTTTTCTTCCEEECCSCCTTSCG-----GGSHHHHHHHHHHHTTC-TTCC
T ss_pred cCCCccEEECCCCC-CCHHHH-----HHHHHHHHhCCCccEEeCcccccCccc-----cchhHHHHHHHHHHhhC-Cccc
Confidence 34667777777763 111100 0001112346777778777763 222 12233332111 0122 3778
Q ss_pred EEEEecCCCch----hhhhhcccCCccceeeeccccccccc----CcccCCC---------CCccEEEcccCCCc-cccC
Q 048507 1163 SLRVWDCPKLE----SIAERLDNNTSLEIIRIAYCENLKIL----PSGLHNL---------RQLQEIEIRRCGNL-VSFP 1224 (1448)
Q Consensus 1163 ~L~L~~~~~~~----~~~~~~~~l~~L~~L~Ls~n~~~~~~----p~~l~~l---------~~L~~L~L~~~~~l-~~lp 1224 (1448)
+|+|++|.... .+|..+..+++|++|+|++|.+.... +..+..+ ++|++|++++|... ..+|
T Consensus 98 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 177 (386)
T 2ca6_A 98 TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177 (386)
T ss_dssp EEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred EEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH
Confidence 88888777665 46667777888888888877764332 2223333 67777777776543 2333
Q ss_pred ---CCCCCCCCccEEEecCccCcc-----ccccccCCCCcccceecccCCCccccCCCCCccceeeeccccccccccccc
Q 048507 1225 ---KGGLPGAKLTRLEISDCNRLE-----ALPKGLHNLKSLQELRIGVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIER 1296 (1448)
Q Consensus 1225 ---~~~~~~~~L~~L~l~~~~~~~-----~~p~~l~~l~~L~~L~l~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 1296 (1448)
..+..+++|++|++++|.... .+|..+..+++|++|++ ++|..........
T Consensus 178 ~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~L---------------------s~n~l~~~g~~~l 236 (386)
T 2ca6_A 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDL---------------------QDNTFTHLGSSAL 236 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEEC---------------------CSSCCHHHHHHHH
T ss_pred HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEEC---------------------cCCCCCcHHHHHH
Confidence 223345677777777765431 22334555555555555 2222100000112
Q ss_pred CCccccCCCccEEEEecCCCcCccccccccccCCCC--CCCCCcCeEEEccCCCCc----cccccc-cCCCCCCeEeecC
Q 048507 1297 GRGFHRFSSLQHLTIEGCDDDMVSFPLEDKRLGTAL--PLPASLTTLWIYNFPNLE----RLSSSI-VDLQNLTELRLLN 1369 (1448)
Q Consensus 1297 ~~~~~~l~~L~~L~l~~c~~~~~~~p~~~~~~~~~~--~~~~~L~~L~l~~~~~l~----~lp~~~-~~l~~L~~L~l~~ 1369 (1448)
+..+..+++|++|+|++|. +.... ...++..+ ..+++|+.|+|++|.... .+|..+ .++++|++|++++
T Consensus 237 ~~~l~~~~~L~~L~L~~n~--i~~~~--~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 237 AIALKSWPNLRELGLNDCL--LSARG--AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp HHHGGGCTTCCEEECTTCC--CCHHH--HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHccCCCcCEEECCCCC--Cchhh--HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 2245556667777776652 11110 00011122 225667777777754333 266655 4567777777777
Q ss_pred CC
Q 048507 1370 CP 1371 (1448)
Q Consensus 1370 c~ 1371 (1448)
|+
T Consensus 313 N~ 314 (386)
T 2ca6_A 313 NR 314 (386)
T ss_dssp SB
T ss_pred Cc
Confidence 65
No 107
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.31 E-value=9.5e-11 Score=139.16 Aligned_cols=293 Identities=13% Similarity=0.036 Sum_probs=184.0
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccc-cceEEEEEeCCccCHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDH-FDLKAWTCVSDDFDVKGLTKTI 266 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i 266 (1448)
+.++||+.+++++.+++........+..+.+.|+|++|+||||+|+.+++.. ... -..++|+++....+...+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY--KDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH--TTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH--hhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 6799999999999999865211011223489999999999999999998732 222 1356788888888888999999
Q ss_pred HHhccCCCC-CCCCHHHHHHHHHHHhC--CccEEEEEecCCCCChhhHhhhcccccCCC----CCcEEEEEcCchhhhhc
Q 048507 267 LRSVTKQTI-DDSDLNLLQEELKKKLS--QKKFLLVLDDVWNENYNDWVRLSRPFEAGA----PGSKIIVTTRNQEVADI 339 (1448)
Q Consensus 267 ~~~l~~~~~-~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~ilvTtR~~~v~~~ 339 (1448)
+..++.... .......+.+.+.+.+. +++.+||+|+++..+......+...+.... .+..||++|+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 988865432 22345556666665553 568899999997665444555544443211 46778888876543322
Q ss_pred cC-------CcceEeCCCCCHHHHHHHHhhcccC---CchhhHHHHHHHHHhc---------CCchHHHHHHHhh-hc--
Q 048507 340 MG-------TASAYQLKKLSIDDCLAVVAQHSLG---SDKLLEEIGKKIVAKC---------DGLPLAAQTLGGL-LR-- 397 (1448)
Q Consensus 340 ~~-------~~~~~~l~~l~~~~a~~l~~~~~~~---~~~~~~~~~~~i~~~~---------~g~PLal~~~~~~-l~-- 397 (1448)
+. ....+.+.+++.++..+++...+.. .....++....|++.+ +|.|-.+..+... ..
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAA 254 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHH
Confidence 21 1136999999999999999776421 2233456778899999 7887544433221 11
Q ss_pred ---cC--CChhHHHHHHhccccCCCCcccchhhHHHHhhhcCChhhHHHHhhhcccC---CCceeCHHHHHHHHHH----
Q 048507 398 ---GK--CDRSDWEDLLSCKIWNLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFP---KDYEFEEEEIILLWCA---- 465 (1448)
Q Consensus 398 ---~~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp---~~~~i~~~~li~~w~~---- 465 (1448)
+. -+.+....+..... ...+.-.+..|+.+.+.++..++.+. .+..+....+...+..
T Consensus 255 ~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 324 (389)
T 1fnn_A 255 QQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEE 324 (389)
T ss_dssp HHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHH
T ss_pred HHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHH
Confidence 11 11222222222111 11223446778888888888777654 2224566666554432
Q ss_pred cCCCcCCCCCCChHHHHHHHHHHHHhCCccccc
Q 048507 466 SGFLDHKESGNPNEDLGRKFFQELRGRSFFQQS 498 (1448)
Q Consensus 466 ~g~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~ 498 (1448)
.|.. .........++.+|..+++|...
T Consensus 325 ~~~~------~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 325 YGER------PRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp TTCC------CCCHHHHHHHHHHHHHTTSSEEE
T ss_pred cCCC------CCCHHHHHHHHHHHHhCCCeEEe
Confidence 1211 11235577899999999999874
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.31 E-value=7.4e-12 Score=152.64 Aligned_cols=175 Identities=25% Similarity=0.293 Sum_probs=139.2
Q ss_pred CccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEecCccCccccccccCCCCcccceec
Q 048507 1183 TSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEISDCNRLEALPKGLHNLKSLQELRI 1262 (1448)
Q Consensus 1183 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l 1262 (1448)
.+|+.|++++|.+.+ +|..+ +++|+.|+|++|. ++.+| ..+++|++|++++|.+.+ +|. +.. +|++|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNA-LISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 389999999988766 77766 4899999999975 56888 346899999999987655 887 665 9999999
Q ss_pred -ccCCCccccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecCCCcCccccccccccCCCCCCCCCcCeE
Q 048507 1263 -GVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTTL 1341 (1448)
Q Consensus 1263 -~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~p~~~~~~~~~~~~~~~L~~L 1341 (1448)
+|.+..++. .+++|+.|++++|... ..+ . .+++|++|++++| .+..+|. +. ++|+.|
T Consensus 128 s~N~l~~lp~--~l~~L~~L~Ls~N~l~----~lp-~---~l~~L~~L~Ls~N--~L~~lp~--------l~--~~L~~L 185 (571)
T 3cvr_A 128 DNNQLTMLPE--LPALLEYINADNNQLT----MLP-E---LPTSLEVLSVRNN--QLTFLPE--------LP--ESLEAL 185 (571)
T ss_dssp CSSCCSCCCC--CCTTCCEEECCSSCCS----CCC-C---CCTTCCEEECCSS--CCSCCCC--------CC--TTCCEE
T ss_pred CCCcCCCCCC--cCccccEEeCCCCccC----cCC-C---cCCCcCEEECCCC--CCCCcch--------hh--CCCCEE
Confidence 778888877 6899999999999633 222 2 5789999999995 4555663 23 899999
Q ss_pred EEccCCCCccccccccCCCCC-------CeEeecCCCCCCcCCCC-CCcccccceeccCCch
Q 048507 1342 WIYNFPNLERLSSSIVDLQNL-------TELRLLNCPKLKYFPEK-GLPSSLLQLSIYRCPL 1395 (1448)
Q Consensus 1342 ~l~~~~~l~~lp~~~~~l~~L-------~~L~l~~c~~l~~lp~~-~~~~~L~~L~i~~c~~ 1395 (1448)
+|++| .++.+|. +.. +| +.|++++| .++.+|.. ..+++|+.|++++|+.
T Consensus 186 ~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 186 DVSTN-LLESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp ECCSS-CCSSCCC-CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred ECcCC-CCCchhh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcC
Confidence 99995 6889998 554 77 99999996 58899974 3478999999999974
No 109
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.30 E-value=9.6e-14 Score=162.53 Aligned_cols=233 Identities=14% Similarity=0.071 Sum_probs=155.1
Q ss_pred CCCccccEEEEecCCCchhhh----hhcccCC-ccceeeecccccccccCcccCCC-----CCccEEEcccCCCccccCC
Q 048507 1156 NLPESLKSLRVWDCPKLESIA----ERLDNNT-SLEIIRIAYCENLKILPSGLHNL-----RQLQEIEIRRCGNLVSFPK 1225 (1448)
Q Consensus 1156 ~~~~~L~~L~L~~~~~~~~~~----~~~~~l~-~L~~L~Ls~n~~~~~~p~~l~~l-----~~L~~L~L~~~~~l~~lp~ 1225 (1448)
..+++|++|++++|...+..+ ..+..++ +|++|+|++|.+....+..+..+ ++|++|+|++|......+.
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 345579999999998766555 6788898 99999999998887766666554 9999999999874433332
Q ss_pred C----CCCC-CCccEEEecCccCccccccc----cCC-CCcccceec-ccCCCccccC-------CCCCccceeeecccc
Q 048507 1226 G----GLPG-AKLTRLEISDCNRLEALPKG----LHN-LKSLQELRI-GVELPSLEED-------GLPTNLHSLGIRGNM 1287 (1448)
Q Consensus 1226 ~----~~~~-~~L~~L~l~~~~~~~~~p~~----l~~-l~~L~~L~l-~~~l~~~~~~-------~~~~~L~~L~l~~n~ 1287 (1448)
. +..+ ++|++|++++|...+..+.. +.. .++|++|++ +|.+...... ..+++|++|++++|.
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 1 2233 79999999999866554433 444 369999999 5555532211 233599999999996
Q ss_pred cccccccccCCccccC-CCccEEEEecCCCcCccccccccccCCCCCC-CCCcCeEEEccCCCCccc-----cccccCCC
Q 048507 1288 EIWKSTIERGRGFHRF-SSLQHLTIEGCDDDMVSFPLEDKRLGTALPL-PASLTTLWIYNFPNLERL-----SSSIVDLQ 1360 (1448)
Q Consensus 1288 ~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~~~~~~p~~~~~~~~~~~~-~~~L~~L~l~~~~~l~~l-----p~~~~~l~ 1360 (1448)
............+..+ ++|++|++++|. +.... ...++..+.. .++|+.|+|++|. ++.. ...+..++
T Consensus 179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--i~~~~--~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~ 253 (362)
T 3goz_A 179 LASKNCAELAKFLASIPASVTSLDLSANL--LGLKS--YAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLK 253 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSC--GGGSC--HHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTT
T ss_pred CchhhHHHHHHHHHhCCCCCCEEECCCCC--CChhH--HHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCC
Confidence 3311111111234455 599999999963 33210 0011222223 5699999999964 5443 34557789
Q ss_pred CCCeEeecCCCCCCcCC--------CC-CCcccccceeccCCc
Q 048507 1361 NLTELRLLNCPKLKYFP--------EK-GLPSSLLQLSIYRCP 1394 (1448)
Q Consensus 1361 ~L~~L~l~~c~~l~~lp--------~~-~~~~~L~~L~i~~c~ 1394 (1448)
+|+.|++++|. +..++ .. ...++|+.|++++|+
T Consensus 254 ~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 254 HLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 99999999975 22222 21 245789999999986
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.30 E-value=1.1e-11 Score=130.57 Aligned_cols=124 Identities=13% Similarity=0.092 Sum_probs=89.2
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEec
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEIS 1239 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~ 1239 (1448)
+|++|++++|... .+| .+..+++|++|++++|.. .. +..+..+++|++|++++|......|..+..+++|++|+++
T Consensus 45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~-~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHA-TN-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCC-SC-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCC-Cc-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 7888888887655 555 588888899999988843 22 3467788889999998877666677778888889999999
Q ss_pred CccCccccccccCCCCcccceec-ccC-CCccccCCCCCccceeeecccc
Q 048507 1240 DCNRLEALPKGLHNLKSLQELRI-GVE-LPSLEEDGLPTNLHSLGIRGNM 1287 (1448)
Q Consensus 1240 ~~~~~~~~p~~l~~l~~L~~L~l-~~~-l~~~~~~~~~~~L~~L~l~~n~ 1287 (1448)
+|...+..|..+..+++|++|++ ++. +..++....+++|+.|++++|.
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG 170 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC
Confidence 88877777778888888888888 343 4444433334445555555543
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.27 E-value=1e-11 Score=139.82 Aligned_cols=171 Identities=16% Similarity=0.150 Sum_probs=98.3
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEec
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEIS 1239 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~ 1239 (1448)
+|++|++++|.... ++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|. ++.+|. +..+++|++|+++
T Consensus 47 ~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 47 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEECT
T ss_pred cccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEECC
Confidence 55666665554332 22 25555555566665555444322 5555555555555543 333332 4445555555555
Q ss_pred CccCccccccccCCCCcccceecccCCCccccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecCCCcCc
Q 048507 1240 DCNRLEALPKGLHNLKSLQELRIGVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDMV 1319 (1448)
Q Consensus 1240 ~~~~~~~~p~~l~~l~~L~~L~l~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~ 1319 (1448)
+|. +..++....+++|+.|++++|... . ...+..+++|++|++++| .+.
T Consensus 121 ~n~-----------------------i~~~~~l~~l~~L~~L~l~~n~l~----~--~~~l~~l~~L~~L~L~~N--~l~ 169 (291)
T 1h6t_A 121 HNG-----------------------ISDINGLVHLPQLESLYLGNNKIT----D--ITVLSRLTKLDTLSLEDN--QIS 169 (291)
T ss_dssp TSC-----------------------CCCCGGGGGCTTCCEEECCSSCCC----C--CGGGGGCTTCSEEECCSS--CCC
T ss_pred CCc-----------------------CCCChhhcCCCCCCEEEccCCcCC----c--chhhccCCCCCEEEccCC--ccc
Confidence 554 333322233345555555555321 1 145677888888888885 333
Q ss_pred cccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCCC
Q 048507 1320 SFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFPE 1378 (1448)
Q Consensus 1320 ~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~ 1378 (1448)
.++. +..+++|+.|++++| .++.+|. +..+++|+.|++++|+ +...|.
T Consensus 170 ~~~~--------l~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n~-i~~~~~ 217 (291)
T 1h6t_A 170 DIVP--------LAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQE-CLNKPI 217 (291)
T ss_dssp CCGG--------GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEEE-EECCCE
T ss_pred cchh--------hcCCCccCEEECCCC-cCCCChh-hccCCCCCEEECcCCc-ccCCcc
Confidence 3432 467888999999885 6777774 7889999999999865 544443
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.26 E-value=2.7e-13 Score=158.65 Aligned_cols=239 Identities=16% Similarity=0.075 Sum_probs=159.1
Q ss_pred CCCccceeeccCCCCcccccccCCCchhhhccccCCCCccccEEEEecCCCchhhhhhcccC-----Cccceeeeccccc
Q 048507 1121 TSSLLEELDINSCPSLTCIFSKNELPATLESLEVGNLPESLKSLRVWDCPKLESIAERLDNN-----TSLEIIRIAYCEN 1195 (1448)
Q Consensus 1121 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l-----~~L~~L~Ls~n~~ 1195 (1448)
..++|++|++++|. ++.. .+..+. -.+..++.+|++|+|++|...+..+..+..+ ++|++|++++|.+
T Consensus 20 ~~~~L~~L~Ls~n~-l~~~-----~~~~l~-~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 20 IPHGVTSLDLSLNN-LYSI-----STVELI-QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp SCTTCCEEECTTSC-GGGS-----CHHHHH-HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred CCCCceEEEccCCC-CChH-----HHHHHH-HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 44559999999986 3321 110000 0112333489999999998777666666654 9999999999998
Q ss_pred ccccCcc----cCCC-CCccEEEcccCCCccccCC-C----CCC-CCCccEEEecCccCcc----ccccccCCCC-cccc
Q 048507 1196 LKILPSG----LHNL-RQLQEIEIRRCGNLVSFPK-G----GLP-GAKLTRLEISDCNRLE----ALPKGLHNLK-SLQE 1259 (1448)
Q Consensus 1196 ~~~~p~~----l~~l-~~L~~L~L~~~~~l~~lp~-~----~~~-~~~L~~L~l~~~~~~~----~~p~~l~~l~-~L~~ 1259 (1448)
.+..+.. +..+ ++|++|++++|.. +..+. . +.. .++|++|++++|.... .++..+..++ +|++
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 171 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSCG-GGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCcC-CcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE
Confidence 7765553 4445 8999999999864 43332 1 222 3699999999998664 3445556665 9999
Q ss_pred eec-ccCCCccccC-------CCCCccceeeecccccccccccccCCcccc-CCCccEEEEecCCCcCccccccccccCC
Q 048507 1260 LRI-GVELPSLEED-------GLPTNLHSLGIRGNMEIWKSTIERGRGFHR-FSSLQHLTIEGCDDDMVSFPLEDKRLGT 1330 (1448)
Q Consensus 1260 L~l-~~~l~~~~~~-------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~-l~~L~~L~l~~c~~~~~~~p~~~~~~~~ 1330 (1448)
|++ ++.+...... ..+++|+.|++++|..........+..+.. .++|++|++++| .+...+.. .+..
T Consensus 172 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N--~l~~~~~~--~l~~ 247 (362)
T 3goz_A 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN--CLHGPSLE--NLKL 247 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS--CCCCCCHH--HHHH
T ss_pred eeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC--CCCcHHHH--HHHH
Confidence 999 5666544321 122699999999997431111112234444 359999999996 33333321 1223
Q ss_pred CCCCCCCcCeEEEccCC-------CCccccccccCCCCCCeEeecCCC
Q 048507 1331 ALPLPASLTTLWIYNFP-------NLERLSSSIVDLQNLTELRLLNCP 1371 (1448)
Q Consensus 1331 ~~~~~~~L~~L~l~~~~-------~l~~lp~~~~~l~~L~~L~l~~c~ 1371 (1448)
.+..+++|+.|++++|. .+..++..+..+++|+.|++++|+
T Consensus 248 ~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 45678899999999975 134456677889999999999976
No 113
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.26 E-value=1.5e-11 Score=138.38 Aligned_cols=167 Identities=15% Similarity=0.224 Sum_probs=116.1
Q ss_pred CCCccceeeccCCCCcccccccCCCchhhhccccCCCCccccEEEEecCCCchhhhhhcccCCccceeeecccccccccC
Q 048507 1121 TSSLLEELDINSCPSLTCIFSKNELPATLESLEVGNLPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILP 1200 (1448)
Q Consensus 1121 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p 1200 (1448)
.+++|+.|++++|. ++. ++ .+.. + ++|++|++++|...+..+ +..+++|++|++++|.+.+ +|
T Consensus 44 ~l~~L~~L~l~~~~-i~~------~~-~~~~-----l-~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~ 106 (291)
T 1h6t_A 44 ELNSIDQIIANNSD-IKS------VQ-GIQY-----L-PNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS 106 (291)
T ss_dssp HHHTCCEEECTTSC-CCC------CT-TGGG-----C-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG
T ss_pred hcCcccEEEccCCC-ccc------Ch-hHhc-----C-CCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch
Confidence 46889999999874 222 11 1222 2 499999999998776554 9999999999999988765 43
Q ss_pred cccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEecCccCccccccccCCCCcccceec-ccCCCccccCCCCCccc
Q 048507 1201 SGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEISDCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGLPTNLH 1279 (1448)
Q Consensus 1201 ~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~~~~L~ 1279 (1448)
.+..+++|++|++++|. ++.++ .+..+++|+.|++++|...+ + ..+..+++|++|++ +|.+..++.
T Consensus 107 -~l~~l~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~-------- 173 (291)
T 1h6t_A 107 -SLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-------- 173 (291)
T ss_dssp -GGTTCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--------
T ss_pred -hhccCCCCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccccchh--------
Confidence 48999999999999975 45554 46678999999999987554 3 46677777777776 444333322
Q ss_pred eeeecccccccccccccCCccccCCCccEEEEecCCCcCccccccccccCCCCCCCCCcCeEEEccCC
Q 048507 1280 SLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTTLWIYNFP 1347 (1448)
Q Consensus 1280 ~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~ 1347 (1448)
+..+++|++|++++| .+..+| .+..+++|+.|++++|+
T Consensus 174 --------------------l~~l~~L~~L~L~~N--~i~~l~--------~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 174 --------------------LAGLTKLQNLYLSKN--HISDLR--------ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp --------------------GTTCTTCCEEECCSS--CCCBCG--------GGTTCTTCSEEEEEEEE
T ss_pred --------------------hcCCCccCEEECCCC--cCCCCh--------hhccCCCCCEEECcCCc
Confidence 555666677777664 333333 13566777777777753
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.26 E-value=5.7e-12 Score=155.79 Aligned_cols=192 Identities=16% Similarity=0.143 Sum_probs=146.2
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEec
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEIS 1239 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~ 1239 (1448)
.+..+.+..+......+ +..+++|+.|++++|.+.. +| .+..+++|+.|+|++|.. ..++. +..+++|+.|+|+
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l-~~~~~-l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKL-TDIKP-LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCC-CCCGG-GGGCTTCCEEECC
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCC-CCChh-hccCCCCCEEECc
Confidence 34444555444433332 5678999999999987654 44 588899999999999754 44554 6778999999999
Q ss_pred CccCccccccccCCCCcccceec-ccCCCccccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecCCCcC
Q 048507 1240 DCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDM 1318 (1448)
Q Consensus 1240 ~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~ 1318 (1448)
+|.+. .+| .+..+++|+.|++ ++.+..++....+++|+.|+|++|... . ...+..+++|+.|+|++| .+
T Consensus 96 ~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~----~--l~~l~~l~~L~~L~Ls~N--~l 165 (605)
T 1m9s_A 96 ENKIK-DLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT----D--ITVLSRLTKLDTLSLEDN--QI 165 (605)
T ss_dssp SSCCC-CCT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCC----C--CGGGGSCTTCSEEECCSS--CC
T ss_pred CCCCC-CCh-hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccC----C--chhhcccCCCCEEECcCC--cC
Confidence 98754 454 7899999999999 778888777677799999999999643 1 257889999999999986 33
Q ss_pred ccccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCCC
Q 048507 1319 VSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFPE 1378 (1448)
Q Consensus 1319 ~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~ 1378 (1448)
..++. +..+++|+.|+|++| .+..+| .+..+++|+.|++++|+ +...|.
T Consensus 166 ~~~~~--------l~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~-l~~~p~ 214 (605)
T 1m9s_A 166 SDIVP--------LAGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQE-CLNKPI 214 (605)
T ss_dssp CCCGG--------GTTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSEE-EECCCC
T ss_pred CCchh--------hccCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCCc-CcCCcc
Confidence 33332 567899999999996 567776 58889999999999976 444443
No 115
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.25 E-value=1e-10 Score=138.78 Aligned_cols=291 Identities=13% Similarity=0.072 Sum_probs=175.3
Q ss_pred cCeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccc---cceEEEEEeCCccCHHHHH
Q 048507 187 EAQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDH---FDLKAWTCVSDDFDVKGLT 263 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~---f~~~~wv~~~~~~~~~~~~ 263 (1448)
+..|+||+.+++++.+++.... .....+.+.|+|++|+||||||+.+++. .... -..++|+++....+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~--~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLY--REEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGG--GTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHH--cCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHH
Confidence 4679999999999999886421 1234568899999999999999999873 2222 2356788887777788888
Q ss_pred HHHHHhccCCCC-CCCCHHHHHHHHHHHhC--CccEEEEEecCCCCC----hhhHhhhcccccC-CCCCcEEEEEcCchh
Q 048507 264 KTILRSVTKQTI-DDSDLNLLQEELKKKLS--QKKFLLVLDDVWNEN----YNDWVRLSRPFEA-GAPGSKIIVTTRNQE 335 (1448)
Q Consensus 264 ~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~ilvTtR~~~ 335 (1448)
..++..++.... .......+.+.+.+.+. +++.+||+|+++... ...+..+...+.. ...+..+|+||+...
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 888887764322 22335555556665554 458999999995421 1223333322211 234566788887654
Q ss_pred hhhccCC-------cceEeCCCCCHHHHHHHHhhcc---cCCchhhHHHHHHHHHhcC---CchHHHHH-HHhhhc----
Q 048507 336 VADIMGT-------ASAYQLKKLSIDDCLAVVAQHS---LGSDKLLEEIGKKIVAKCD---GLPLAAQT-LGGLLR---- 397 (1448)
Q Consensus 336 v~~~~~~-------~~~~~l~~l~~~~a~~l~~~~~---~~~~~~~~~~~~~i~~~~~---g~PLal~~-~~~~l~---- 397 (1448)
....+.. ...+++++++.++..+++...+ +.......++.+.+++.++ |.|..+.. +.....
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~ 254 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAER 254 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 3322211 1479999999999999998753 2222334566777888887 99984433 322211
Q ss_pred -c--CCChhHHHHHHhccccCCCCcccchhhHHHHhhhcCChhhHHHHhhhcccCC-C-ceeCHHHHHHHH----HHcCC
Q 048507 398 -G--KCDRSDWEDLLSCKIWNLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPK-D-YEFEEEEIILLW----CASGF 468 (1448)
Q Consensus 398 -~--~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp~-~-~~i~~~~li~~w----~~~g~ 468 (1448)
+ .-+.+.++.++... ....+.-.+..++...+..+..++...+ + ..+....+.... -..|.
T Consensus 255 ~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~ 324 (386)
T 2qby_A 255 MKDTKVKEEYVYMAKEEI----------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGV 324 (386)
T ss_dssp TTCSSCCHHHHHHHHHHH----------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTC
T ss_pred cCCCccCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCC
Confidence 1 11234444443311 1234566778899888888887774322 2 223343332211 11121
Q ss_pred CcCCCCCCChHHHHHHHHHHHHhCCcccc
Q 048507 469 LDHKESGNPNEDLGRKFFQELRGRSFFQQ 497 (1448)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~L~~~sll~~ 497 (1448)
. .........+++.|...+++..
T Consensus 325 -~-----~~~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 325 -E-----AVTQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp -C-----CCCHHHHHHHHHHHHHHTSEEE
T ss_pred -C-----CCCHHHHHHHHHHHHhCCCEEE
Confidence 1 1123456788999999999975
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.24 E-value=1.8e-11 Score=129.02 Aligned_cols=124 Identities=16% Similarity=0.095 Sum_probs=91.6
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEec
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEIS 1239 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~ 1239 (1448)
+|++|++++|.. ..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|......|..+..+++|++|+++
T Consensus 67 ~L~~L~l~~n~~-~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 144 (197)
T 4ezg_A 67 NIKDLTINNIHA-TNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144 (197)
T ss_dssp TCSEEEEESCCC-SCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECC
T ss_pred CCCEEEccCCCC-Ccc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEcc
Confidence 888888888833 333 367888888888888888877777888888888888888877666566667778888888888
Q ss_pred CccCccccccccCCCCcccceec-ccCCCccccCCCCCccceeeeccc
Q 048507 1240 DCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGLPTNLHSLGIRGN 1286 (1448)
Q Consensus 1240 ~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~~~~L~~L~l~~n 1286 (1448)
+|..++.+| .+..+++|++|++ ++.+..++....+++|+.|++++|
T Consensus 145 ~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 145 YNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp SCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC
T ss_pred CCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCc
Confidence 887677776 6888888888888 566665543333345555555554
No 117
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.21 E-value=5.7e-11 Score=126.63 Aligned_cols=155 Identities=16% Similarity=0.140 Sum_probs=106.8
Q ss_pred CCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCC-CCCCCCccEEEecCccCccccccccCCCCcccce
Q 048507 1182 NTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKG-GLPGAKLTRLEISDCNRLEALPKGLHNLKSLQEL 1260 (1448)
Q Consensus 1182 l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~-~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L 1260 (1448)
.++|++|++++|.+.+..+..+..+++|++|++++|. ++.+|.. +..+++|++|++++|...+..+..+..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 4578888888887776555667788888888888864 4455554 4567888888888877554444446677777666
Q ss_pred ec-ccCCCccccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecCCCcCccccccccccCCCCCCCCCcC
Q 048507 1261 RI-GVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDMVSFPLEDKRLGTALPLPASLT 1339 (1448)
Q Consensus 1261 ~l-~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~p~~~~~~~~~~~~~~~L~ 1339 (1448)
++ .+.+. ..++..+..+++|++|++++| .+..+|. ..+..+++|+
T Consensus 106 ~L~~N~l~--------------------------~~~~~~~~~l~~L~~L~l~~N--~l~~~~~------~~~~~l~~L~ 151 (208)
T 2o6s_A 106 ALNTNQLQ--------------------------SLPDGVFDKLTQLKDLRLYQN--QLKSVPD------GVFDRLTSLQ 151 (208)
T ss_dssp ECCSSCCC--------------------------CCCTTTTTTCTTCCEEECCSS--CCSCCCT------TTTTTCTTCC
T ss_pred EcCCCcCc--------------------------ccCHhHhccCCcCCEEECCCC--ccceeCH------HHhccCCCcc
Confidence 66 33322 233345677889999999885 3444543 2356788999
Q ss_pred eEEEccCCCCccccccccCCCCCCeEeecCCCCCCcCCC
Q 048507 1340 TLWIYNFPNLERLSSSIVDLQNLTELRLLNCPKLKYFPE 1378 (1448)
Q Consensus 1340 ~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~ 1378 (1448)
.|++++|+.. ..++.|+.|+++.+..-+.+|.
T Consensus 152 ~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 152 YIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp EEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBC
T ss_pred EEEecCCCee-------cCCCCHHHHHHHHHhCCceeec
Confidence 9999987432 4566888888888776667776
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.19 E-value=6.2e-11 Score=127.08 Aligned_cols=129 Identities=15% Similarity=0.192 Sum_probs=100.2
Q ss_pred CCccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCC-CCCCCCccE
Q 048507 1157 LPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKG-GLPGAKLTR 1235 (1448)
Q Consensus 1157 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~-~~~~~~L~~ 1235 (1448)
+|++|+.|++++|...+..+..+..+++|++|+|++|.+.+..|..|.++++|++|+|++|. ++.+|.. +..+++|++
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQL 108 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCE
Confidence 34689999999998877777789999999999999999888888999999999999999964 5567765 456899999
Q ss_pred EEecCccCccccccccCCCCcccceec-ccCCCccccCCC--CCccceeeeccc
Q 048507 1236 LEISDCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGL--PTNLHSLGIRGN 1286 (1448)
Q Consensus 1236 L~l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~--~~~L~~L~l~~n 1286 (1448)
|+|++|.+.+..|..|..+++|++|++ +|.+..++...+ .++|+.|++++|
T Consensus 109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 999999887777888888888888888 555555443221 234444444444
No 119
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.19 E-value=4.3e-11 Score=147.95 Aligned_cols=80 Identities=20% Similarity=0.200 Sum_probs=44.5
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEec
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEIS 1239 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~ 1239 (1448)
+|+.|+|++|...+. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|. +..+| .+..+++|+.|+|+
T Consensus 132 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-i~~l~-~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 132 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELF 205 (605)
T ss_dssp TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCBCG-GGTTCTTCSEEECC
T ss_pred ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEcc
Confidence 555555555544433 345566666666666665555444 5566666666666653 33343 24455666666666
Q ss_pred CccCcc
Q 048507 1240 DCNRLE 1245 (1448)
Q Consensus 1240 ~~~~~~ 1245 (1448)
+|+..+
T Consensus 206 ~N~l~~ 211 (605)
T 1m9s_A 206 SQECLN 211 (605)
T ss_dssp SEEEEC
T ss_pred CCcCcC
Confidence 665443
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.18 E-value=2.6e-11 Score=141.56 Aligned_cols=153 Identities=12% Similarity=0.047 Sum_probs=115.0
Q ss_pred CCccccEEEEecCCCchhhhhhcc-cCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCC-CCCCCCCcc
Q 048507 1157 LPESLKSLRVWDCPKLESIAERLD-NNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPK-GGLPGAKLT 1234 (1448)
Q Consensus 1157 ~~~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~-~~~~~~~L~ 1234 (1448)
+|+.++.|+|++|...+..+..+. ++++|++|+|++|.+.+..+..|.++++|++|+|++|. +..++. .+..+++|+
T Consensus 37 ~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALE 115 (361)
T ss_dssp CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCC
T ss_pred CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCC
Confidence 445789999999888777777777 89999999999988887777788999999999999976 455554 466789999
Q ss_pred EEEecCccCccccccccCCCCcccceec-ccCCCccccCCC-----CCccceeeecccccccccccccCCccccCCC--c
Q 048507 1235 RLEISDCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGL-----PTNLHSLGIRGNMEIWKSTIERGRGFHRFSS--L 1306 (1448)
Q Consensus 1235 ~L~l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~-----~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~--L 1306 (1448)
+|+|++|.+.+..|..|.++++|+.|++ +|.+..++...+ +++|+.|+|++|... ..+...+..+++ |
T Consensus 116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~----~l~~~~~~~l~~~~l 191 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK----KLPLTDLQKLPAWVK 191 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC----CCCHHHHHHSCHHHH
T ss_pred EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC----ccCHHHhhhccHhhc
Confidence 9999998877777788999999999999 677777665433 567777777776422 233334555555 3
Q ss_pred cEEEEecC
Q 048507 1307 QHLTIEGC 1314 (1448)
Q Consensus 1307 ~~L~l~~c 1314 (1448)
+.|++++|
T Consensus 192 ~~l~l~~N 199 (361)
T 2xot_A 192 NGLYLHNN 199 (361)
T ss_dssp TTEECCSS
T ss_pred ceEEecCC
Confidence 66777663
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.17 E-value=3.1e-11 Score=133.48 Aligned_cols=145 Identities=19% Similarity=0.189 Sum_probs=70.7
Q ss_pred CCCCCccEEEcccCCCccccCCCCCCCCCccEEEecCccCccccccccCCCCcccceec-ccCCCccccCCCCCccceee
Q 048507 1204 HNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEISDCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGLPTNLHSLG 1282 (1448)
Q Consensus 1204 ~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~~~~L~~L~ 1282 (1448)
..+++|+.|++++| .++.+| .+..+++|++|++++|...+ +|. +..+++|++|++ +|.+..++.... ++|+.|+
T Consensus 38 ~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~ 112 (263)
T 1xeu_A 38 KELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLF 112 (263)
T ss_dssp HHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEE
T ss_pred hhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCCcCcccc-CcccEEE
Confidence 34444444444443 233333 23334444444444443222 222 444444444444 344444433333 5555666
Q ss_pred ecccccccccccccCCccccCCCccEEEEecCCCcCccccccccccCCCCCCCCCcCeEEEccCCCCccccccccCCCCC
Q 048507 1283 IRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSSSIVDLQNL 1362 (1448)
Q Consensus 1283 l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L 1362 (1448)
+++|... . ...+..+++|++|++++| .+..++ .+..+++|+.|++++| .+..+ ..+..+++|
T Consensus 113 L~~N~l~----~--~~~l~~l~~L~~L~Ls~N--~i~~~~--------~l~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L 174 (263)
T 1xeu_A 113 LDNNELR----D--TDSLIHLKNLEILSIRNN--KLKSIV--------MLGFLSKLEVLDLHGN-EITNT-GGLTRLKKV 174 (263)
T ss_dssp CCSSCCS----B--SGGGTTCTTCCEEECTTS--CCCBCG--------GGGGCTTCCEEECTTS-CCCBC-TTSTTCCCC
T ss_pred ccCCccC----C--ChhhcCcccccEEECCCC--cCCCCh--------HHccCCCCCEEECCCC-cCcch-HHhccCCCC
Confidence 6655321 1 124556666666666663 233332 1345666666666664 34444 445666677
Q ss_pred CeEeecCCC
Q 048507 1363 TELRLLNCP 1371 (1448)
Q Consensus 1363 ~~L~l~~c~ 1371 (1448)
+.|++++|+
T Consensus 175 ~~L~l~~N~ 183 (263)
T 1xeu_A 175 NWIDLTGQK 183 (263)
T ss_dssp CEEEEEEEE
T ss_pred CEEeCCCCc
Confidence 777776644
No 122
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.17 E-value=9.6e-11 Score=126.60 Aligned_cols=129 Identities=18% Similarity=0.194 Sum_probs=94.7
Q ss_pred CCccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCC-CCCCCCccE
Q 048507 1157 LPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKG-GLPGAKLTR 1235 (1448)
Q Consensus 1157 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~-~~~~~~L~~ 1235 (1448)
++++|++|+|++|...+..|..+.++++|++|+|++|.+....+..|..+++|+.|+|++|. ++.+|.. +..+++|++
T Consensus 38 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKE 116 (229)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCe
Confidence 34689999999998888888889999999999999988755555667889999999999874 4556554 466889999
Q ss_pred EEecCccCccccccccCCCCcccceec-ccCCCccccCCC--CCccceeeecccc
Q 048507 1236 LEISDCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGL--PTNLHSLGIRGNM 1287 (1448)
Q Consensus 1236 L~l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~--~~~L~~L~l~~n~ 1287 (1448)
|++++|.+ ..+|..+..+++|++|++ .|.+..++...+ .++|+.|++++|+
T Consensus 117 L~Ls~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 117 LFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp EECCSSCC-CSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EeccCCcc-cccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 99998764 478888888888888888 555555443211 2444444444443
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.13 E-value=2.6e-10 Score=123.14 Aligned_cols=99 Identities=19% Similarity=0.181 Sum_probs=62.5
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCC-CCCCCCccEEEe
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKG-GLPGAKLTRLEI 1238 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~-~~~~~~L~~L~l 1238 (1448)
+.+.++.+++ .++.+|..+ .++|++|+|++|.+.+..|..+..+++|++|+|++|. ++.+|.. +..+++|++|+|
T Consensus 20 s~~~v~c~~~-~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSK-RHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp ETTEEECTTS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred eCCEeEccCC-CcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEEC
Confidence 3455665543 344555433 2778888888877777777777778888888888764 4555543 355777777777
Q ss_pred cCccCccccccccCCCCcccceec
Q 048507 1239 SDCNRLEALPKGLHNLKSLQELRI 1262 (1448)
Q Consensus 1239 ~~~~~~~~~p~~l~~l~~L~~L~l 1262 (1448)
++|.+.+..+..+..+++|++|++
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcCCccChhHhCcchhhCeEec
Confidence 777654433334555555555555
No 124
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.12 E-value=2.8e-10 Score=122.00 Aligned_cols=148 Identities=17% Similarity=0.162 Sum_probs=93.6
Q ss_pred EEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEecCcc
Q 048507 1163 SLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEISDCN 1242 (1448)
Q Consensus 1163 ~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~~~~ 1242 (1448)
.++++++ .+..+|..+. ++|+.|++++|.+.+..+..|..+++|+.|+|++|......|..+..+++|++|+|++|.
T Consensus 15 ~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGK-GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTS-CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCC-CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 4455443 2344554333 578888888887776666677888888888888876555556677778888888888876
Q ss_pred CccccccccCCCCcccceec-ccCCCccccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecCCCcCccc
Q 048507 1243 RLEALPKGLHNLKSLQELRI-GVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDMVSF 1321 (1448)
Q Consensus 1243 ~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~ 1321 (1448)
+....+..|.++++|++|++ +|.+..+ .+..|..+++|++|++++| .+..+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~--------------------------~~~~~~~l~~L~~L~L~~N--~l~~~ 143 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCL--------------------------RVDAFQDLHNLNLLSLYDN--KLQTI 143 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCC--------------------------CTTTTTTCTTCCEEECCSS--CCSCC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEe--------------------------CHHHcCCCCCCCEEECCCC--cCCEE
Confidence 55433334667777777777 4444333 3345666667777777663 34444
Q ss_pred cccccccCCCCCCCCCcCeEEEccCC
Q 048507 1322 PLEDKRLGTALPLPASLTTLWIYNFP 1347 (1448)
Q Consensus 1322 p~~~~~~~~~~~~~~~L~~L~l~~~~ 1347 (1448)
+. ..+..+++|+.|++++|+
T Consensus 144 ~~------~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 144 AK------GTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CT------TTTTTCTTCCEEECCSSC
T ss_pred CH------HHHhCCCCCCEEEeCCCC
Confidence 42 224556677777777754
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.11 E-value=2e-10 Score=134.01 Aligned_cols=105 Identities=11% Similarity=0.084 Sum_probs=71.4
Q ss_pred cEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccC-CCCCccEEEcccCCCccccCCCCCCCCCccEEEecC
Q 048507 1162 KSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLH-NLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEISD 1240 (1448)
Q Consensus 1162 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~-~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~~ 1240 (1448)
+.++++++. +..+|..+. +.++.|+|++|.+.+..+..+. .+++|+.|+|++|......+..+..+++|++|+|++
T Consensus 21 ~~l~c~~~~-l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQ-LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSC-CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCC-cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 456666543 344564432 4588889998887776666676 888889999988654433334577788888888888
Q ss_pred ccCccccccccCCCCcccceec-ccCCCcc
Q 048507 1241 CNRLEALPKGLHNLKSLQELRI-GVELPSL 1269 (1448)
Q Consensus 1241 ~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~ 1269 (1448)
|.+....+..|.++++|++|++ +|.+..+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 127 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVV 127 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEE
Confidence 8765554556777888777777 4444443
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.11 E-value=4.5e-10 Score=120.35 Aligned_cols=87 Identities=7% Similarity=-0.076 Sum_probs=56.2
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEec
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEIS 1239 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~ 1239 (1448)
+|++|+|++|...+..+..+.++++|++|+|++|.+.+..|..+..+++|+.|+|++|...+..|..+..+++|+.|+++
T Consensus 82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 56666666666655555666677777777777766666666666677777777777655444445556666677777777
Q ss_pred CccCccc
Q 048507 1240 DCNRLEA 1246 (1448)
Q Consensus 1240 ~~~~~~~ 1246 (1448)
+|+....
T Consensus 162 ~N~l~c~ 168 (220)
T 2v70_A 162 ANPFNCN 168 (220)
T ss_dssp SCCEECS
T ss_pred CcCCcCC
Confidence 7665443
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.11 E-value=1.7e-10 Score=123.69 Aligned_cols=131 Identities=15% Similarity=0.049 Sum_probs=88.5
Q ss_pred CccccEEEEecCCCchhhh-hhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEE
Q 048507 1158 PESLKSLRVWDCPKLESIA-ERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRL 1236 (1448)
Q Consensus 1158 ~~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L 1236 (1448)
++.+++|++++|...+..+ ..+..+++|++|++++|.+.+..+..|..+++|++|+|++|...+..+..+..+++|++|
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 3467788888877666544 357778888888888877766666677778888888888765443333345567788888
Q ss_pred EecCccCccccccccCCCCcccceec-ccCCCccccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecC
Q 048507 1237 EISDCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGC 1314 (1448)
Q Consensus 1237 ~l~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c 1314 (1448)
++++|.+.+..|..+..+++|++|++ +|.+..+ .+..|..+++|++|++++|
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------------------------~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV--------------------------APGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB--------------------------CTTTTTTCTTCCEEECCSC
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE--------------------------CHHHhcCCCCCCEEEecCc
Confidence 88887766666777777777777777 4444333 3345556666777777664
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.10 E-value=4.6e-12 Score=155.76 Aligned_cols=184 Identities=14% Similarity=0.107 Sum_probs=116.7
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccc-------------cccccCcccCCCCCccEEE-cccCC-------
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCE-------------NLKILPSGLHNLRQLQEIE-IRRCG------- 1218 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-------------~~~~~p~~l~~l~~L~~L~-L~~~~------- 1218 (1448)
+|+.|+|++|.. +.+|..+++|++|+.|++++|. ..+.+|..+.++++|+.|+ ++.+.
T Consensus 350 ~L~~L~Ls~n~L-~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l 428 (567)
T 1dce_A 350 QLFRCELSVEKS-TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428 (567)
T ss_dssp TSSSCCCCHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cceeccCChhhH-HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence 677777777643 5778888888888888887664 3455566677777777777 44321
Q ss_pred -----CccccCCCCCCCCCccEEEecCccCccccccccCCCCcccceecccCCCccccCCCCCccceeeecccccccccc
Q 048507 1219 -----NLVSFPKGGLPGAKLTRLEISDCNRLEALPKGLHNLKSLQELRIGVELPSLEEDGLPTNLHSLGIRGNMEIWKST 1293 (1448)
Q Consensus 1219 -----~l~~lp~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~ 1293 (1448)
.+..+|. ..|+.|++++|.+. .+|. +..+++|+.|++ ++|.. .
T Consensus 429 ~l~~n~i~~l~~-----~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~L---------------------s~N~l----~ 476 (567)
T 1dce_A 429 FLLENSVLKMEY-----ADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDL---------------------SHNRL----R 476 (567)
T ss_dssp HHHHHHHHHHHH-----TTCSEEECTTSCCS-SCCC-GGGGTTCCEEEC---------------------CSSCC----C
T ss_pred hhhcccccccCc-----cCceEEEecCCCCC-CCcC-ccccccCcEeec---------------------Ccccc----c
Confidence 1122221 24666777666533 3554 555555555555 33321 1
Q ss_pred cccCCccccCCCccEEEEecCCCcCccccccccccCCCCCCCCCcCeEEEccCCCCccc--cccccCCCCCCeEeecCCC
Q 048507 1294 IERGRGFHRFSSLQHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERL--SSSIVDLQNLTELRLLNCP 1371 (1448)
Q Consensus 1294 ~~~~~~~~~l~~L~~L~l~~c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--p~~~~~l~~L~~L~l~~c~ 1371 (1448)
..|..+.++++|++|++++| .+..+| .+..+++|+.|+|++| .+..+ |..+..+++|+.|++++|+
T Consensus 477 -~lp~~~~~l~~L~~L~Ls~N--~l~~lp--------~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 477 -ALPPALAALRCLEVLQASDN--ALENVD--------GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp -CCCGGGGGCTTCCEEECCSS--CCCCCG--------GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred -ccchhhhcCCCCCEEECCCC--CCCCCc--------ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 22346677888888888874 444455 2467888888888885 45555 7888888899999998865
Q ss_pred CCCcCCCCC-----Cccccccee
Q 048507 1372 KLKYFPEKG-----LPSSLLQLS 1389 (1448)
Q Consensus 1372 ~l~~lp~~~-----~~~~L~~L~ 1389 (1448)
++.+|+.. .+++|+.|+
T Consensus 545 -l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 545 -LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp -GGGSSSCTTHHHHHCTTCSEEE
T ss_pred -CCCCccHHHHHHHHCcccCccC
Confidence 66666532 146666664
No 129
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.09 E-value=6.5e-10 Score=122.63 Aligned_cols=197 Identities=14% Similarity=0.123 Sum_probs=118.4
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.+++||+.+++.+..++.... ..+.+.|+|++|+||||+|+.+++.......+.. ..+... .. ...+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~---~~~~~~---~~-~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVC---DN-CREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS---SCCSCS---HH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCCccc---HH-HHHHh
Confidence 358999999999999997642 2357899999999999999999864321111100 000000 00 00010
Q ss_pred HhccC-----CCCCCCCHHHHHHHHHHH----hCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchhhh-
Q 048507 268 RSVTK-----QTIDDSDLNLLQEELKKK----LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQEVA- 337 (1448)
Q Consensus 268 ~~l~~-----~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~- 337 (1448)
..... ........+.+...+... ..+++.+||+||++......+..+...+.....+.++|+||+.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 00000 000001111111111111 13567999999997765566666666665555678888888764321
Q ss_pred hcc-CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchHHHHHHHhhh
Q 048507 338 DIM-GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPLAAQTLGGLL 396 (1448)
Q Consensus 338 ~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal~~~~~~l 396 (1448)
..+ .....+++++++.++..+++...+.... ...++..+.|++.++|.|..+..+...+
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 111 2235799999999999999987653221 2335677899999999999888776443
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.09 E-value=1.5e-10 Score=118.41 Aligned_cols=111 Identities=23% Similarity=0.199 Sum_probs=92.7
Q ss_pred hhhhhhcccCceeEEEeCCCCccccCccccCCccceEEeccCccccc-cChhhhccccccEEeccCCchhhccc--cccc
Q 048507 586 SILTELFKLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRT-LPESVNKLYNLHSLLLEDCDRLKKLC--ADMG 662 (1448)
Q Consensus 586 ~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~-lp~~i~~L~~L~~L~L~~n~~~~~lp--~~i~ 662 (1448)
.+|..+..+++|++|++++|.++.+ ..++.+++|++|+|++|.+.. +|..+..+++|++|++++| .+..+| ..+.
T Consensus 40 ~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~ 117 (168)
T 2ell_A 40 KIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLK 117 (168)
T ss_dssp BCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGS
T ss_pred hHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHh
Confidence 4455556889999999999999888 788899999999999999986 7788888999999999997 456655 6789
Q ss_pred ccCCCCeeeecCCCCcccccc----ccCcccccccccceec
Q 048507 663 NLAKLHHLKNSNTKSLEEMPV----GIGRLTSLQTLCNFVV 699 (1448)
Q Consensus 663 ~L~~L~~L~l~~~~~l~~~p~----~i~~L~~L~~L~~~~~ 699 (1448)
.+++|++|++++|. +..+|. .+..+++|++|+...+
T Consensus 118 ~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 118 KLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp SCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred cCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC
Confidence 99999999999998 777776 6888999998865444
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.08 E-value=9e-11 Score=120.17 Aligned_cols=102 Identities=20% Similarity=0.275 Sum_probs=90.4
Q ss_pred ccCceeEEEeCCCCcc--ccCccccCCccceEEeccCccccccChhhhccccccEEeccCCchhhcccccccccCCCCee
Q 048507 593 KLQRLRVFSLRGYRID--ELPDSIGDLRYFRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHL 670 (1448)
Q Consensus 593 ~l~~L~~L~L~~n~i~--~lp~~i~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~~L~~L 670 (1448)
..++|+.|++++|.++ .+|..+..+++|++|+|++|.++.+ ..+..+++|++|++++|.....+|..++.+++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 4578999999999998 8999999999999999999999988 889999999999999986555588878889999999
Q ss_pred eecCCCCccccc--cccCcccccccccc
Q 048507 671 KNSNTKSLEEMP--VGIGRLTSLQTLCN 696 (1448)
Q Consensus 671 ~l~~~~~l~~~p--~~i~~L~~L~~L~~ 696 (1448)
++++|. +..+| ..++.+++|++|+.
T Consensus 101 ~Ls~N~-l~~~~~~~~l~~l~~L~~L~l 127 (168)
T 2ell_A 101 NLSGNK-LKDISTLEPLKKLECLKSLDL 127 (168)
T ss_dssp ECBSSS-CCSSGGGGGGSSCSCCCEEEC
T ss_pred eccCCc-cCcchhHHHHhcCCCCCEEEe
Confidence 999998 78876 56888888888843
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.07 E-value=1.3e-10 Score=121.51 Aligned_cols=102 Identities=20% Similarity=0.283 Sum_probs=87.2
Q ss_pred CceeEEEeCCCCccccCccccCCccceEEeccCccccccC-hhhhccccccEEeccCCchhhcccccccccCCCCeeeec
Q 048507 595 QRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNS 673 (1448)
Q Consensus 595 ~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~~L~~L~l~ 673 (1448)
+.|++|+|++|.|+.+|..|.++++|++|+|++|.|+.++ ..|.++++|++|+|++|......|..|..+++|++|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 5789999999999999999999999999999999999876 578999999999999986555445578999999999999
Q ss_pred CCCCccccccc-cCcccccccccce
Q 048507 674 NTKSLEEMPVG-IGRLTSLQTLCNF 697 (1448)
Q Consensus 674 ~~~~l~~~p~~-i~~L~~L~~L~~~ 697 (1448)
+|. +..+|.. +..+++|+.|+..
T Consensus 111 ~N~-l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 111 GND-ISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp SSC-CCBCCTTTTTTCTTCCEEECC
T ss_pred CCC-CCeeChhhhhcCccccEEEeC
Confidence 998 7788875 7888888888543
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.07 E-value=1.1e-10 Score=116.70 Aligned_cols=108 Identities=19% Similarity=0.201 Sum_probs=87.4
Q ss_pred hhhhhhcccCceeEEEeCCCCccccCccccCCccceEEeccCccccc-cChhhhccccccEEeccCCchhhccc--cccc
Q 048507 586 SILTELFKLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRT-LPESVNKLYNLHSLLLEDCDRLKKLC--ADMG 662 (1448)
Q Consensus 586 ~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~-lp~~i~~L~~L~~L~L~~n~~~~~lp--~~i~ 662 (1448)
.+|..+..+++|++|++++|.++.+ ..++.+++|++|+|++|.+.. +|..+..+++|++|++++|. +..+| ..++
T Consensus 33 ~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~ 110 (149)
T 2je0_A 33 KLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLK 110 (149)
T ss_dssp BCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGG
T ss_pred HHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc-CCChHHHHHHh
Confidence 3455555888999999999998888 778889999999999999986 77888889999999999874 45443 7788
Q ss_pred ccCCCCeeeecCCCCcccccc----ccCcccccccccc
Q 048507 663 NLAKLHHLKNSNTKSLEEMPV----GIGRLTSLQTLCN 696 (1448)
Q Consensus 663 ~L~~L~~L~l~~~~~l~~~p~----~i~~L~~L~~L~~ 696 (1448)
.+++|++|++++|. +..+|. .++.+++|+.|+.
T Consensus 111 ~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 111 KLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp GCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred hCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 99999999999998 677765 4778888888743
No 134
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.04 E-value=7.5e-10 Score=122.31 Aligned_cols=118 Identities=24% Similarity=0.291 Sum_probs=73.7
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEec
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEIS 1239 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~ 1239 (1448)
+|++|++++|... .++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|. ++.+|.... ++|++|+++
T Consensus 42 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~-l~~l~~~~~--~~L~~L~L~ 114 (263)
T 1xeu_A 42 GVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR-LKNLNGIPS--ACLSRLFLD 114 (263)
T ss_dssp TCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC-CSCCTTCCC--SSCCEEECC
T ss_pred cCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCc-cCCcCcccc--CcccEEEcc
Confidence 7777777777543 344 57777888888888776655433 7778888888888754 455654333 778888888
Q ss_pred CccCccccccccCCCCcccceec-ccCCCccccCCCCCccceeeeccc
Q 048507 1240 DCNRLEALPKGLHNLKSLQELRI-GVELPSLEEDGLPTNLHSLGIRGN 1286 (1448)
Q Consensus 1240 ~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~~~~~~~~L~~L~l~~n 1286 (1448)
+|...+ +| .+..+++|++|++ +|.+..++....+++|+.|++++|
T Consensus 115 ~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 115 NNELRD-TD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGN 160 (263)
T ss_dssp SSCCSB-SG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTS
T ss_pred CCccCC-Ch-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCC
Confidence 876443 43 4667777777777 444444433333344444444444
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.04 E-value=1.4e-10 Score=115.90 Aligned_cols=102 Identities=19% Similarity=0.257 Sum_probs=91.2
Q ss_pred ccCceeEEEeCCCCcc--ccCccccCCccceEEeccCccccccChhhhccccccEEeccCCchhhcccccccccCCCCee
Q 048507 593 KLQRLRVFSLRGYRID--ELPDSIGDLRYFRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHL 670 (1448)
Q Consensus 593 ~l~~L~~L~L~~n~i~--~lp~~i~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~~L~~L 670 (1448)
..++|+.|++++|.++ .+|..++.+++|++|++++|.++.+ ..++.+++|++|++++|...+.+|..++.+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 4578999999999998 8999999999999999999999988 889999999999999986555588888899999999
Q ss_pred eecCCCCccccc--cccCcccccccccc
Q 048507 671 KNSNTKSLEEMP--VGIGRLTSLQTLCN 696 (1448)
Q Consensus 671 ~l~~~~~l~~~p--~~i~~L~~L~~L~~ 696 (1448)
++++|. +..+| ..++.+++|++|+.
T Consensus 94 ~ls~N~-i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 94 NLSGNK-IKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp ECTTSC-CCSHHHHGGGGGCTTCCEEEC
T ss_pred ECCCCc-CCChHHHHHHhhCCCCCEEeC
Confidence 999999 77765 67889999998844
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.03 E-value=1.3e-09 Score=125.34 Aligned_cols=88 Identities=16% Similarity=0.146 Sum_probs=45.5
Q ss_pred CccceeeecccccccccccccCCccccCCCccEEEEecCCCcCccccccccccCCCCCCCCCcC-eEEEccCCCCcccc-
Q 048507 1276 TNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDMVSFPLEDKRLGTALPLPASLT-TLWIYNFPNLERLS- 1353 (1448)
Q Consensus 1276 ~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~p~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~lp- 1353 (1448)
++|+.+++++|. ....+...|.++++|+.|++.++ +..++. .+|..+++|+ .+++.+ .++.++
T Consensus 226 ~~L~~l~L~~n~----i~~I~~~aF~~~~~L~~l~l~~n---i~~I~~------~aF~~~~~L~~~l~l~~--~l~~I~~ 290 (329)
T 3sb4_A 226 PNLVSLDISKTN----ATTIPDFTFAQKKYLLKIKLPHN---LKTIGQ------RVFSNCGRLAGTLELPA--SVTAIEF 290 (329)
T ss_dssp TTCCEEECTTBC----CCEECTTTTTTCTTCCEEECCTT---CCEECT------TTTTTCTTCCEEEEECT--TCCEECT
T ss_pred CCCeEEECCCCC----cceecHhhhhCCCCCCEEECCcc---cceehH------HHhhCChhccEEEEEcc--cceEEch
Confidence 455555555553 22344455566666666666552 333332 2355556665 666655 455554
Q ss_pred ccccCCCCCCeEeecCCCCCCcCCCC
Q 048507 1354 SSIVDLQNLTELRLLNCPKLKYFPEK 1379 (1448)
Q Consensus 1354 ~~~~~l~~L~~L~l~~c~~l~~lp~~ 1379 (1448)
..|.+|++|+.|++++ +.++.++..
T Consensus 291 ~aF~~c~~L~~l~l~~-n~i~~I~~~ 315 (329)
T 3sb4_A 291 GAFMGCDNLRYVLATG-DKITTLGDE 315 (329)
T ss_dssp TTTTTCTTEEEEEECS-SCCCEECTT
T ss_pred hhhhCCccCCEEEeCC-CccCccchh
Confidence 3455566666666554 335555543
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.02 E-value=2.7e-10 Score=117.43 Aligned_cols=105 Identities=19% Similarity=0.196 Sum_probs=87.4
Q ss_pred hhcccC-ceeEEEeCCCCccccCccccCCccceEEeccCccccccChhh-hccccccEEeccCCchhhcccc--cccccC
Q 048507 590 ELFKLQ-RLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPESV-NKLYNLHSLLLEDCDRLKKLCA--DMGNLA 665 (1448)
Q Consensus 590 ~~~~l~-~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp~~i-~~L~~L~~L~L~~n~~~~~lp~--~i~~L~ 665 (1448)
.+..+. +|++|++++|.|+.+ +.|+.+++|++|+|++|.|+.+|+.+ ..+++|++|++++| .++.+|. .++.++
T Consensus 36 ~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~ 113 (176)
T 1a9n_A 36 NLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLK 113 (176)
T ss_dssp CGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCT
T ss_pred HhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCC
Confidence 345444 899999999999888 67889999999999999999888554 89999999999997 4577776 788999
Q ss_pred CCCeeeecCCCCccccccc----cCcccccccccce
Q 048507 666 KLHHLKNSNTKSLEEMPVG----IGRLTSLQTLCNF 697 (1448)
Q Consensus 666 ~L~~L~l~~~~~l~~~p~~----i~~L~~L~~L~~~ 697 (1448)
+|++|++++|. +..+|.. ++.+++|+.|+..
T Consensus 114 ~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 114 SLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp TCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTE
T ss_pred CCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCC
Confidence 99999999998 7778875 7888888888543
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.02 E-value=2.8e-10 Score=119.05 Aligned_cols=101 Identities=17% Similarity=0.193 Sum_probs=80.0
Q ss_pred ceeEEEeCCCCccccCcc--ccCCccceEEeccCcccccc-ChhhhccccccEEeccCCchhhcccccccccCCCCeeee
Q 048507 596 RLRVFSLRGYRIDELPDS--IGDLRYFRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 672 (1448)
Q Consensus 596 ~L~~L~L~~n~i~~lp~~--i~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~~L~~L~l 672 (1448)
.|++|++++|.|+.++.. |+.+++|++|+|++|.|+.+ |..|.++++|++|+|++|...+..|..|..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 788889999888888653 78888999999999988866 678888899999999887655555556888889999999
Q ss_pred cCCCCccccccccCcccccccccc
Q 048507 673 SNTKSLEEMPVGIGRLTSLQTLCN 696 (1448)
Q Consensus 673 ~~~~~l~~~p~~i~~L~~L~~L~~ 696 (1448)
++|.+....|..++.+++|++|+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEEC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEe
Confidence 988843444666888888888854
No 139
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.99 E-value=2.7e-09 Score=115.59 Aligned_cols=185 Identities=14% Similarity=0.079 Sum_probs=116.5
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
..++||+..++++.+++... ..+.+.|+|++|+|||++|+.+++.......-...+.+..+.......+...+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIK 90 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHH
Confidence 45899999999999999654 223489999999999999999987321111112334455444333332222211
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchhhh-hcc-CCcce
Q 048507 268 RSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQEVA-DIM-GTASA 345 (1448)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~-~~~-~~~~~ 345 (1448)
....... ...+++.+||+||++.........+...+.....+.++|+||+..... ..+ .....
T Consensus 91 ~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~ 155 (226)
T 2chg_A 91 EFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAV 155 (226)
T ss_dssp HHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCce
Confidence 1111000 012568899999997765555555655555555678888888765321 111 22247
Q ss_pred EeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchHHHHHHH
Q 048507 346 YQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPLAAQTLG 393 (1448)
Q Consensus 346 ~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal~~~~ 393 (1448)
+++.+++.++..+++...+.... ...++....|++.++|.|..+..+.
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 156 FRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 89999999999999987653211 2335677889999999998655443
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.99 E-value=1.1e-10 Score=148.32 Aligned_cols=101 Identities=25% Similarity=0.340 Sum_probs=54.2
Q ss_pred ccCceeEEEeCCCCccccCccccCCccceEEeccCccccccChhhhccccccEEeccCCchhhcccccccccCCCCeeee
Q 048507 593 KLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 672 (1448)
Q Consensus 593 ~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~~L~~L~l 672 (1448)
.++.|++|+|++|.+..+|..+.++++|++|+|++|.|+.+|..|++|++|++|+|++|. +..+|..|++|++|++|+|
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEEC
T ss_pred cCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEEC
Confidence 555555555555555555555555555555555555555555555555555555555543 3345555555555555555
Q ss_pred cCCCCccccccccCccccccccc
Q 048507 673 SNTKSLEEMPVGIGRLTSLQTLC 695 (1448)
Q Consensus 673 ~~~~~l~~~p~~i~~L~~L~~L~ 695 (1448)
++|. ++.+|..|+.|++|++|+
T Consensus 301 ~~N~-l~~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 301 FDNM-VTTLPWEFGNLCNLQFLG 322 (727)
T ss_dssp CSSC-CCCCCSSTTSCTTCCCEE
T ss_pred CCCC-CCccChhhhcCCCccEEe
Confidence 5554 445555555555555553
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.97 E-value=4.4e-10 Score=142.91 Aligned_cols=121 Identities=23% Similarity=0.302 Sum_probs=99.9
Q ss_pred hhhccccccEeeccccccCCCCCCchhhhhhhcccCceeEEEeCCCCccccCccccCCccceEEeccCccccccChhhhc
Q 048507 560 KLYDIQHLRTFLPVMLSNSLHGYLAPSILTELFKLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPESVNK 639 (1448)
Q Consensus 560 ~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp~~i~~ 639 (1448)
.+..+..|+.|... +.....+|..++++++|++|+|++|.|+.+|..|++|++|++|+|++|.|+.+|..|++
T Consensus 219 ~~~~l~~L~~L~Ls-------~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 291 (727)
T 4b8c_D 219 SKYDDQLWHALDLS-------NLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGS 291 (727)
T ss_dssp ---CCCCCCEEECT-------TSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGG
T ss_pred hhccCCCCcEEECC-------CCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcC
Confidence 34567778877332 22233677888899999999999999999999999999999999999999999999999
Q ss_pred cccccEEeccCCchhhcccccccccCCCCeeeecCCCCccccccccCcc
Q 048507 640 LYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRL 688 (1448)
Q Consensus 640 L~~L~~L~L~~n~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L 688 (1448)
|++|++|+|++| .++.+|..|++|++|++|+|++|.+.+.+|..++.+
T Consensus 292 l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 292 CFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp GTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred CCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence 999999999997 567999999999999999999999555566555443
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.93 E-value=3.2e-09 Score=110.92 Aligned_cols=106 Identities=17% Similarity=0.135 Sum_probs=86.8
Q ss_pred CCccccEEEEecCCCchhhhh-hcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccE
Q 048507 1157 LPESLKSLRVWDCPKLESIAE-RLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTR 1235 (1448)
Q Consensus 1157 ~~~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~ 1235 (1448)
++.+|++|++++|...+..+. .+..+++|++|+|++|.+.+..|..|..+++|++|+|++|...+..+..+..+++|++
T Consensus 27 ~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 106 (192)
T 1w8a_A 27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT 106 (192)
T ss_dssp CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCE
T ss_pred CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence 345889999999877665553 4889999999999999888888888999999999999997655555555777899999
Q ss_pred EEecCccCccccccccCCCCcccceec
Q 048507 1236 LEISDCNRLEALPKGLHNLKSLQELRI 1262 (1448)
Q Consensus 1236 L~l~~~~~~~~~p~~l~~l~~L~~L~l 1262 (1448)
|++++|.+.+..|..+..+++|++|++
T Consensus 107 L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 107 LNLYDNQISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp EECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred EECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence 999998888888888888888888888
No 143
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.92 E-value=1.2e-09 Score=134.29 Aligned_cols=92 Identities=21% Similarity=0.218 Sum_probs=61.4
Q ss_pred hcccCceeEEEeCCCCccccCccccCCccceEEeccCccccccChhhhccccccEEeccCCchhhcc-cccccccCCCCe
Q 048507 591 LFKLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKL-CADMGNLAKLHH 669 (1448)
Q Consensus 591 ~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~l-p~~i~~L~~L~~ 669 (1448)
+..+++|++|+|++|.|+.+|..|+++++|++|+|++|.|+.+| .+++|++|++|+|++|...+.. |..|+.|++|++
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~ 537 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 537 (567)
T ss_dssp GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCE
Confidence 55666777777777777777777777777777777777777666 6677777777777766433332 666777777777
Q ss_pred eeecCCCCccccccc
Q 048507 670 LKNSNTKSLEEMPVG 684 (1448)
Q Consensus 670 L~l~~~~~l~~~p~~ 684 (1448)
|++++|. +..+|..
T Consensus 538 L~L~~N~-l~~~~~~ 551 (567)
T 1dce_A 538 LNLQGNS-LCQEEGI 551 (567)
T ss_dssp EECTTSG-GGGSSSC
T ss_pred EEecCCc-CCCCccH
Confidence 7777776 5555543
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.88 E-value=4.4e-11 Score=126.16 Aligned_cols=106 Identities=20% Similarity=0.272 Sum_probs=87.3
Q ss_pred hhhhhhcccCceeEEEeCCCCccccCccccCCccceEEeccCccccccChhhhccccccEEeccCCchhhcccccccccC
Q 048507 586 SILTELFKLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLA 665 (1448)
Q Consensus 586 ~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~ 665 (1448)
.+|..+..+++|++|++++|.++.+| .+..+++|++|++++|.+..+|..+..+++|++|++++| .+..+| .++.++
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~ 115 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLV 115 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHH
T ss_pred hhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCC
Confidence 34556778899999999999998888 888899999999999999999988888899999999987 455666 688899
Q ss_pred CCCeeeecCCCCcccccc--ccCccccccccc
Q 048507 666 KLHHLKNSNTKSLEEMPV--GIGRLTSLQTLC 695 (1448)
Q Consensus 666 ~L~~L~l~~~~~l~~~p~--~i~~L~~L~~L~ 695 (1448)
+|++|++++|. +..+|. .+..+++|++|+
T Consensus 116 ~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 116 NLRVLYMSNNK-ITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp HSSEEEESEEE-CCCHHHHHHHTTTTTCSEEE
T ss_pred CCCEEECCCCc-CCchhHHHHHhcCCCCCEEE
Confidence 99999999988 666654 467777777773
No 145
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.88 E-value=1.2e-09 Score=112.46 Aligned_cols=102 Identities=28% Similarity=0.436 Sum_probs=87.4
Q ss_pred hcccCceeEEEeCCCCccccCccccCCc-cceEEeccCccccccChhhhccccccEEeccCCchhhcccccc-cccCCCC
Q 048507 591 LFKLQRLRVFSLRGYRIDELPDSIGDLR-YFRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADM-GNLAKLH 668 (1448)
Q Consensus 591 ~~~l~~L~~L~L~~n~i~~lp~~i~~l~-~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~i-~~L~~L~ 668 (1448)
+..+.+|+.|++++|.++.+|. +..+. +|++|+|++|.|+.+ +.+..+++|++|++++|. +..+|..+ +.+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCC
Confidence 3478899999999999999865 55555 999999999999988 689999999999999974 56677654 9999999
Q ss_pred eeeecCCCCcccccc--ccCcccccccccc
Q 048507 669 HLKNSNTKSLEEMPV--GIGRLTSLQTLCN 696 (1448)
Q Consensus 669 ~L~l~~~~~l~~~p~--~i~~L~~L~~L~~ 696 (1448)
+|++++|. ++.+|. .++.+++|++|+.
T Consensus 92 ~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 92 ELILTNNS-LVELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp EEECCSCC-CCCGGGGGGGGGCTTCCEEEC
T ss_pred EEECCCCc-CCcchhhHhhhcCCCCCEEEe
Confidence 99999999 788887 6888888888844
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.85 E-value=3.6e-09 Score=107.95 Aligned_cols=96 Identities=25% Similarity=0.357 Sum_probs=58.5
Q ss_pred eeEEEeCCCCccccCccccCCccceEEeccCcccccc-ChhhhccccccEEeccCCchhhcccc-cccccCCCCeeeecC
Q 048507 597 LRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCDRLKKLCA-DMGNLAKLHHLKNSN 674 (1448)
Q Consensus 597 L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~lp~-~i~~L~~L~~L~l~~ 674 (1448)
.+++++++|.++.+|..+. .+|++|+|++|.|+.+ |..|.++++|++|+|++|. +..+|. .|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCC
Confidence 3556666666666666553 5666666666666655 3556666666666666653 334443 346666666666666
Q ss_pred CCCccccccc-cCcccccccccc
Q 048507 675 TKSLEEMPVG-IGRLTSLQTLCN 696 (1448)
Q Consensus 675 ~~~l~~~p~~-i~~L~~L~~L~~ 696 (1448)
|. +..+|.. ++.+++|++|+.
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 88 NQ-LKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEEC
T ss_pred Cc-cCEeCHHHhcCCCCCCEEEe
Confidence 66 5555554 666666666643
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.84 E-value=3.8e-09 Score=108.06 Aligned_cols=93 Identities=24% Similarity=0.422 Sum_probs=41.7
Q ss_pred eEEEeCCCCccccCccccCCccceEEeccCcccccc-ChhhhccccccEEeccCCchhhccccc-ccccCCCCeeeecCC
Q 048507 598 RVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLAKLHHLKNSNT 675 (1448)
Q Consensus 598 ~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~lp~~-i~~L~~L~~L~l~~~ 675 (1448)
+.+++++|.++.+|..+. .+|++|+|++|.|+.+ |..|.++++|++|+|++| .+..+|.. |+.+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 344444444444444432 4444444444444443 234444444444444443 23333332 344444444444444
Q ss_pred CCccccccc-cCcccccccc
Q 048507 676 KSLEEMPVG-IGRLTSLQTL 694 (1448)
Q Consensus 676 ~~l~~~p~~-i~~L~~L~~L 694 (1448)
. +..+|.. ++.+++|++|
T Consensus 92 ~-l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 92 H-LKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp C-CCCCCTTTTTTCTTCSEE
T ss_pred c-cceeCHHHhccccCCCEE
Confidence 4 3444433 4444444444
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.84 E-value=1.5e-08 Score=116.40 Aligned_cols=106 Identities=13% Similarity=0.102 Sum_probs=69.7
Q ss_pred ccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCC-CCCCCCcc-EE
Q 048507 1159 ESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKG-GLPGAKLT-RL 1236 (1448)
Q Consensus 1159 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~-~~~~~~L~-~L 1236 (1448)
.++..+.+.++-...........+++|+.|+|++|.+...-+..|.++++|+.|+|.++ ++.|+.. +..+++|+ .+
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTL 279 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEE
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEE
Confidence 46777777765333333333344788888888887655544566788888888888874 6667654 45577788 88
Q ss_pred EecCccCcccc-ccccCCCCcccceec-ccCCCc
Q 048507 1237 EISDCNRLEAL-PKGLHNLKSLQELRI-GVELPS 1268 (1448)
Q Consensus 1237 ~l~~~~~~~~~-p~~l~~l~~L~~L~l-~~~l~~ 1268 (1448)
++.+ + +..+ +..|.++++|+.+++ .+++..
T Consensus 280 ~l~~-~-l~~I~~~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 280 ELPA-S-VTAIEFGAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp EECT-T-CCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred EEcc-c-ceEEchhhhhCCccCCEEEeCCCccCc
Confidence 8877 3 4444 356777787777777 444443
No 149
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.83 E-value=6.2e-09 Score=119.67 Aligned_cols=181 Identities=17% Similarity=0.120 Sum_probs=107.8
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
..++|++..++++..++..... .......+.|+|++|+|||++|+.+++. ... ..+++++.......++..
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~~l~~--- 82 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPGDLAA--- 82 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHHHHHH---
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChHHHHH---
Confidence 4689999999988888753110 0112356889999999999999999873 222 234454443322222211
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccCC------------------CCCcEEEE
Q 048507 268 RSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEAG------------------APGSKIIV 329 (1448)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~------------------~~gs~ilv 329 (1448)
.+... ..++.+|++|+++.........+...+... ..+.++|.
T Consensus 83 ------------------~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 83 ------------------ILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp ------------------HHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred ------------------HHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 11110 134668899999765433333332222111 12355666
Q ss_pred EcCchh-hhhccC--CcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchHHHHHHHhhh
Q 048507 330 TTRNQE-VADIMG--TASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPLAAQTLGGLL 396 (1448)
Q Consensus 330 TtR~~~-v~~~~~--~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal~~~~~~l 396 (1448)
||.... +...+. ....+.+.+++.++..+++...+.... ...++....|++.++|.|-.+..+...+
T Consensus 144 ~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred eCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 665432 221111 124789999999999998877653222 2345678889999999998877665443
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.83 E-value=2.6e-09 Score=109.34 Aligned_cols=100 Identities=23% Similarity=0.281 Sum_probs=83.0
Q ss_pred hhhhhhcccCceeEEEeCCCCcccc-CccccCCccceEEeccCccccccChh-hhccccccEEeccCCchhhccccc-cc
Q 048507 586 SILTELFKLQRLRVFSLRGYRIDEL-PDSIGDLRYFRYLNLSGTEIRTLPES-VNKLYNLHSLLLEDCDRLKKLCAD-MG 662 (1448)
Q Consensus 586 ~~~~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~n~~~~~lp~~-i~ 662 (1448)
.+|..+. +.|++|+|++|.|+.+ |..|.++++|++|+|++|+|+.+|.. |.++++|++|+|++| .+..+|.. |+
T Consensus 26 ~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~ 102 (174)
T 2r9u_A 26 SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFD 102 (174)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHHhc
Confidence 3455443 7899999999999988 67899999999999999999999865 689999999999997 45667665 89
Q ss_pred ccCCCCeeeecCCCCccccccccCccc
Q 048507 663 NLAKLHHLKNSNTKSLEEMPVGIGRLT 689 (1448)
Q Consensus 663 ~L~~L~~L~l~~~~~l~~~p~~i~~L~ 689 (1448)
.+++|++|++++|. +...+..+..+.
T Consensus 103 ~l~~L~~L~L~~N~-~~c~~~~~~~l~ 128 (174)
T 2r9u_A 103 NLKSLTHIYLYNNP-WDCECRDIMYLR 128 (174)
T ss_dssp TCTTCSEEECCSSC-BCTTBGGGHHHH
T ss_pred cccCCCEEEeCCCC-cccccccHHHHH
Confidence 99999999999998 666655444443
No 151
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.83 E-value=1e-08 Score=106.99 Aligned_cols=105 Identities=15% Similarity=0.124 Sum_probs=76.1
Q ss_pred CCccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEE
Q 048507 1157 LPESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRL 1236 (1448)
Q Consensus 1157 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L 1236 (1448)
++++|++|++++|... .+|..+.++++|++|++++|.+.+..+..|.++++|++|+|++|......|..+..+++|++|
T Consensus 29 ~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 29 IPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp CCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEE
Confidence 3457888888887654 666778888888888888888777767778888888888888865444334456677888888
Q ss_pred EecCccCccccccccCCCCcccceec
Q 048507 1237 EISDCNRLEALPKGLHNLKSLQELRI 1262 (1448)
Q Consensus 1237 ~l~~~~~~~~~p~~l~~l~~L~~L~l 1262 (1448)
+|++|.+....+..|..+++|+.|++
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 108 SLHGNDISVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred ECCCCCCCeeChhhhhcCccccEEEe
Confidence 88887755433345666777666666
No 152
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.83 E-value=1.1e-08 Score=117.84 Aligned_cols=186 Identities=17% Similarity=0.177 Sum_probs=115.0
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
..++||+..++.+.+++... ..+.+.|+|++|+|||++|+.+++..........+++++.+....... .++++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-i~~~~ 93 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDV-VRNQI 93 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHH-HHTHH
T ss_pred HHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHH-HHHHH
Confidence 45899999999999998653 223388999999999999999987421111111234444433222211 11111
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHh-CCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchhh-hhcc-CCcc
Q 048507 268 RSVTKQTIDDSDLNLLQEELKKKL-SQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQEV-ADIM-GTAS 344 (1448)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~~~~-~~~~ 344 (1448)
+.+.... ..+ .+++.+||+||++......+..+...+.....++++|+||+...- ...+ ....
T Consensus 94 ~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~ 159 (323)
T 1sxj_B 94 KHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA 159 (323)
T ss_dssp HHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhce
Confidence 1111000 011 345889999999776555566665555555567788888866432 1111 2234
Q ss_pred eEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchH-HHHHHHh
Q 048507 345 AYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPL-AAQTLGG 394 (1448)
Q Consensus 345 ~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PL-al~~~~~ 394 (1448)
.+++.+++.++..+++...+.... ...++.+..|++.++|.|. |+..+..
T Consensus 160 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 160 ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 799999999999999987542111 2335677889999999995 4554443
No 153
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.76 E-value=2.2e-08 Score=103.24 Aligned_cols=104 Identities=17% Similarity=0.139 Sum_probs=73.2
Q ss_pred CccccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCC-CCCCCCccEE
Q 048507 1158 PESLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKG-GLPGAKLTRL 1236 (1448)
Q Consensus 1158 ~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~-~~~~~~L~~L 1236 (1448)
+++|++|++++|...+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|. ++.+|.. +..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEE
Confidence 3578888888887666555667888888888888877766555667788888888888864 4445543 4567888888
Q ss_pred EecCccCccccccccCCCCcccceec
Q 048507 1237 EISDCNRLEALPKGLHNLKSLQELRI 1262 (1448)
Q Consensus 1237 ~l~~~~~~~~~p~~l~~l~~L~~L~l 1262 (1448)
++++|...+..+..+..+++|++|++
T Consensus 106 ~l~~N~l~~~~~~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 106 ALDTNQLKSVPDGIFDRLTSLQKIWL 131 (177)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ECcCCcceEeCHHHhcCCcccCEEEe
Confidence 88887655433334566777777777
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.75 E-value=7.9e-09 Score=105.36 Aligned_cols=91 Identities=26% Similarity=0.361 Sum_probs=77.1
Q ss_pred hhhhhcccCceeEEEeCCCCcccc-CccccCCccceEEeccCccccccCh-hhhccccccEEeccCCchhhcccc-cccc
Q 048507 587 ILTELFKLQRLRVFSLRGYRIDEL-PDSIGDLRYFRYLNLSGTEIRTLPE-SVNKLYNLHSLLLEDCDRLKKLCA-DMGN 663 (1448)
Q Consensus 587 ~~~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~n~~~~~lp~-~i~~ 663 (1448)
+|..+ .+.|++|+|++|.|+.+ |..|.++++|++|+|++|+|+.+|. .|.++++|++|+|++|. +..+|. .|..
T Consensus 24 ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~ 100 (170)
T 3g39_A 24 VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDN 100 (170)
T ss_dssp CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcC
Confidence 44444 37899999999999998 6779999999999999999999885 46899999999999985 555655 5899
Q ss_pred cCCCCeeeecCCCCcccc
Q 048507 664 LAKLHHLKNSNTKSLEEM 681 (1448)
Q Consensus 664 L~~L~~L~l~~~~~l~~~ 681 (1448)
+++|++|++++|. +.-.
T Consensus 101 l~~L~~L~L~~N~-~~c~ 117 (170)
T 3g39_A 101 LKSLTHIWLLNNP-WDCA 117 (170)
T ss_dssp CTTCCEEECCSSC-BCTT
T ss_pred CCCCCEEEeCCCC-CCCC
Confidence 9999999999998 4433
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.75 E-value=1.8e-07 Score=109.45 Aligned_cols=175 Identities=11% Similarity=0.125 Sum_probs=73.5
Q ss_pred hhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCC-CCCCCCccEEEecCccCcccccc-ccCCC
Q 048507 1177 ERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKG-GLPGAKLTRLEISDCNRLEALPK-GLHNL 1254 (1448)
Q Consensus 1177 ~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~-~~~~~~L~~L~l~~~~~~~~~p~-~l~~l 1254 (1448)
..|.+|++|+.+++++|.+...-...|. +.+|+.+.|.. .+..|+.. +..+++|+.+++..+ +..++. .|.+
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~- 247 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE- 247 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-
T ss_pred HHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-
Confidence 3455555555555554333222222222 34555555543 13344332 233445555555442 233332 2333
Q ss_pred CcccceecccCCCccccCCC--CCccceeeecccccc-cccccccCCccccCCCccEEEEecCCCcCccccccccccCCC
Q 048507 1255 KSLQELRIGVELPSLEEDGL--PTNLHSLGIRGNMEI-WKSTIERGRGFHRFSSLQHLTIEGCDDDMVSFPLEDKRLGTA 1331 (1448)
Q Consensus 1255 ~~L~~L~l~~~l~~~~~~~~--~~~L~~L~l~~n~~~-~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~p~~~~~~~~~ 1331 (1448)
.+|+.+.+.+++..++...| .++|+.+++.+|... ..........|.++++|+.+++.+ .+..++. .+
T Consensus 248 ~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~---~i~~I~~------~a 318 (401)
T 4fdw_A 248 SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE---SIRILGQ------GL 318 (401)
T ss_dssp CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT---TCCEECT------TT
T ss_pred CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC---ceEEEhh------hh
Confidence 45555555444444444333 244555555444211 001123334455555555555542 1233321 23
Q ss_pred CCCCCCcCeEEEccCCCCccccc-cccCCCCCCeEeecC
Q 048507 1332 LPLPASLTTLWIYNFPNLERLSS-SIVDLQNLTELRLLN 1369 (1448)
Q Consensus 1332 ~~~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~ 1369 (1448)
|..+++|+.+.|.+ .++.++. .|.++ +|+.+++++
T Consensus 319 F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 319 LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEG 354 (401)
T ss_dssp TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECC
T ss_pred hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcC
Confidence 44455555555533 2444432 34444 555555554
No 156
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.73 E-value=4.2e-10 Score=118.61 Aligned_cols=127 Identities=20% Similarity=0.241 Sum_probs=100.8
Q ss_pred hhhccccccEeeccccccCCCCCCchhhhhhhcccCceeEEEeCCCCccccCccccCCccceEEeccCccccccChhhhc
Q 048507 560 KLYDIQHLRTFLPVMLSNSLHGYLAPSILTELFKLQRLRVFSLRGYRIDELPDSIGDLRYFRYLNLSGTEIRTLPESVNK 639 (1448)
Q Consensus 560 ~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~Ls~n~i~~lp~~i~~ 639 (1448)
.+..+++|+.|..... ....+| .+.++++|++|++++|.++.+|..+..+++|++|+|++|.++.+| .+..
T Consensus 43 ~~~~l~~L~~L~ls~n-------~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~ 113 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-------NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp HHHHTTTCSEEECSEE-------EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred HHhcCCCCCEEECCCC-------CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence 4567788888843221 112244 666999999999999999999998888999999999999999987 7999
Q ss_pred cccccEEeccCCchhhcccc--cccccCCCCeeeecCCCCccccccc----------cCcccccccccc
Q 048507 640 LYNLHSLLLEDCDRLKKLCA--DMGNLAKLHHLKNSNTKSLEEMPVG----------IGRLTSLQTLCN 696 (1448)
Q Consensus 640 L~~L~~L~L~~n~~~~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~----------i~~L~~L~~L~~ 696 (1448)
+++|++|++++| .+..+|. .+..+++|++|++++|.+....|.. +..+++|+.|+.
T Consensus 114 l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 114 LVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp HHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred CCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECC
Confidence 999999999997 4555554 6899999999999999843333332 678888888854
No 157
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.71 E-value=5.8e-08 Score=100.02 Aligned_cols=107 Identities=19% Similarity=0.165 Sum_probs=73.2
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCC-CCCCCCccEEEe
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKG-GLPGAKLTRLEI 1238 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~-~~~~~~L~~L~l 1238 (1448)
+.+.++++++.. ..+|..+ .++|+.|++++|.+.+..+..+..+++|++|++++|. ++.+|.. +..+++|++|++
T Consensus 8 ~~~~l~~~~~~l-~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 8 SGTEIRCNSKGL-TSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp ETTEEECCSSCC-SSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEecCCCC-ccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEEC
Confidence 345666666543 3444332 3688999999888776666667888899999998864 4555554 466888999999
Q ss_pred cCccCccccccccCCCCcccceec-ccCCCccc
Q 048507 1239 SDCNRLEALPKGLHNLKSLQELRI-GVELPSLE 1270 (1448)
Q Consensus 1239 ~~~~~~~~~p~~l~~l~~L~~L~l-~~~l~~~~ 1270 (1448)
++|.+.+..+..+..+++|++|++ .|.+..++
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 116 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVP 116 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeC
Confidence 888766555555777788887777 44444433
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.65 E-value=8.6e-07 Score=103.76 Aligned_cols=122 Identities=15% Similarity=0.206 Sum_probs=66.5
Q ss_pred cccEEEEecCCCchhhhhhcccCCccceeeecccccc-----cccCcccCCCCCccEEEcccCCCccccCCC-CCCCCCc
Q 048507 1160 SLKSLRVWDCPKLESIAERLDNNTSLEIIRIAYCENL-----KILPSGLHNLRQLQEIEIRRCGNLVSFPKG-GLPGAKL 1233 (1448)
Q Consensus 1160 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~-----~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~-~~~~~~L 1233 (1448)
+|+.+.+.+ .....-..+|.+|++|+.+++.++... ..-+..|.+|++|+.+.|.+ .+..++.. +..+++|
T Consensus 249 ~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 249 GITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKV 325 (401)
T ss_dssp CCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSC
T ss_pred CccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCc
Confidence 455555522 222222345666667777666654432 12235566677777777763 35555543 3345677
Q ss_pred cEEEecCccCcccc-ccccCCCCcccceec-ccCCCccccCC---CCCccceeeecccc
Q 048507 1234 TRLEISDCNRLEAL-PKGLHNLKSLQELRI-GVELPSLEEDG---LPTNLHSLGIRGNM 1287 (1448)
Q Consensus 1234 ~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l-~~~l~~~~~~~---~~~~L~~L~l~~n~ 1287 (1448)
+.+.|..+ +..+ +..|.++ +|+.+++ ++.++.+.... ++.+++.|.+..+.
T Consensus 326 ~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 326 TQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CEEEECTT--CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred cEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 77777543 3333 3456666 7777777 45555544432 33566777776653
No 159
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.60 E-value=1.5e-07 Score=108.21 Aligned_cols=183 Identities=15% Similarity=0.129 Sum_probs=114.6
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.+++|++..++.+..++..+ ..+.+.++|++|+|||++|+.+++.......-...+.+..+....... .+..+
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 97 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINV-IREKV 97 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHT-THHHH
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHH-HHHHH
Confidence 35899999999999998664 233489999999999999999987421111111233444333211110 00000
Q ss_pred HhccCCCCCCCCHHHHHHHHHHH--h-CCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchhh-hhcc-CC
Q 048507 268 RSVTKQTIDDSDLNLLQEELKKK--L-SQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQEV-ADIM-GT 342 (1448)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~~--l-~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~~~~-~~ 342 (1448)
...... + .+++.++|+|+++......+..+...+.....++++|+||..... ...+ ..
T Consensus 98 -----------------~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 160 (327)
T 1iqp_A 98 -----------------KEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160 (327)
T ss_dssp -----------------HHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT
T ss_pred -----------------HHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh
Confidence 011110 1 256789999999776555566666655555567888888876432 1111 11
Q ss_pred cceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchHHHHHHHh
Q 048507 343 ASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPLAAQTLGG 394 (1448)
Q Consensus 343 ~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal~~~~~ 394 (1448)
...+++.+++.++..+++...+.... ...++..+.|++.++|.|-.+..+..
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 161 CAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 24789999999999998887653222 33456778899999999986655443
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.58 E-value=4.2e-08 Score=113.91 Aligned_cols=94 Identities=17% Similarity=0.120 Sum_probs=53.7
Q ss_pred EEeCCC-CccccCccccCCccceEEeccC-ccccccC-hhhhccccccEEeccCCchhhcccccccccCCCCeeeecCCC
Q 048507 600 FSLRGY-RIDELPDSIGDLRYFRYLNLSG-TEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTK 676 (1448)
Q Consensus 600 L~L~~n-~i~~lp~~i~~l~~L~~L~Ls~-n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~lp~~i~~L~~L~~L~l~~~~ 676 (1448)
++++++ .++.+|. |..+.+|++|+|++ |.|..+| ..|.+|.+|++|+|++|...+..|..|++|++|++|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 455555 5666666 66666666666664 6666555 456666666666666654333334455666666666666666
Q ss_pred CccccccccCccccccccc
Q 048507 677 SLEEMPVGIGRLTSLQTLC 695 (1448)
Q Consensus 677 ~l~~~p~~i~~L~~L~~L~ 695 (1448)
+..+|..+....+|+.|.
T Consensus 92 -l~~~~~~~~~~~~L~~l~ 109 (347)
T 2ifg_A 92 -LESLSWKTVQGLSLQELV 109 (347)
T ss_dssp -CSCCCSTTTCSCCCCEEE
T ss_pred -cceeCHHHcccCCceEEE
Confidence 555555432222255553
No 161
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.55 E-value=4.1e-07 Score=100.73 Aligned_cols=171 Identities=10% Similarity=0.042 Sum_probs=105.0
Q ss_pred eEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc------ccceEEEEEeCCccCHHHH
Q 048507 189 QVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQD------HFDLKAWTCVSDDFDVKGL 262 (1448)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------~f~~~~wv~~~~~~~~~~~ 262 (1448)
.+.||++|++++...|...- ..+....+.|+|++|+|||++|+.|+++..... .| .++++++....+...+
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i--~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~ 97 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSL--MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDAL 97 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHH
T ss_pred ccCCHHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHH
Confidence 37899999999998886532 233567889999999999999999997432111 22 4677888888889999
Q ss_pred HHHHHHhccCCCCCCC-CHHHHHHHHHHH--hCCccEEEEEecCCCCC-hhhHhhhcccccCC-CCCcEEEEEcCchhh-
Q 048507 263 TKTILRSVTKQTIDDS-DLNLLQEELKKK--LSQKKFLLVLDDVWNEN-YNDWVRLSRPFEAG-APGSKIIVTTRNQEV- 336 (1448)
Q Consensus 263 ~~~i~~~l~~~~~~~~-~~~~~~~~l~~~--l~~~~~LlVlDdv~~~~-~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v- 336 (1448)
+..|++++.+...... ..+.+...+... -+++++++|||+++.-. +.....+.. ++.. .....||.++...+.
T Consensus 98 ~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~-~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 98 YEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEK-WISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHH-HHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHh-cccccCCcEEEEEEecCcccc
Confidence 9999999965433222 233343444332 24668999999996543 111111221 1111 112233333433221
Q ss_pred --------hhccCCcceEeCCCCCHHHHHHHHhhcc
Q 048507 337 --------ADIMGTASAYQLKKLSIDDCLAVVAQHS 364 (1448)
Q Consensus 337 --------~~~~~~~~~~~l~~l~~~~a~~l~~~~~ 364 (1448)
...++ ...+.+.+.+.+|-.+++..++
T Consensus 177 ~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 177 REQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 11221 2468999999999999887654
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.51 E-value=4.1e-06 Score=98.70 Aligned_cols=67 Identities=12% Similarity=0.081 Sum_probs=39.7
Q ss_pred eeccCCccccccCCcceEeecCCCCccccchhhhhHHHhhhhhhccccceEEecccCCccccc-cccCccCCcceeeecc
Q 048507 948 IWKSHDGLLQDICSLKRLTIDSCPTLQSLVAEEEKDQQQQLCELSCRLEYLELNECKGLVKLP-QSSLSLSSLREIEICG 1026 (1448)
Q Consensus 948 i~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~L~~ 1026 (1448)
+.......|.++.+|+++.+.+ .++.+....|. .+++|+.+++.++ ++.++ ..+..+++|+.+.+..
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~--~i~~I~~~aF~--------~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS--TVREIGEFAFE--------NCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT--TCCEECTTTTT--------TCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCT
T ss_pred EeEhHHHHhhCCCCceEEEeCC--CccCcchhHhh--------CCCCCcEEEeCCC--ceEccchhhcccccchhhcccC
Confidence 3445567788888888888863 35555544332 2456777777542 34443 2455666666665543
No 163
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.45 E-value=5.8e-07 Score=102.93 Aligned_cols=180 Identities=14% Similarity=0.128 Sum_probs=112.2
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccc-ceEEEEEeCCccCHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHF-DLKAWTCVSDDFDVKGLTKTI 266 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i 266 (1448)
.+++|++..++.+.+++..+ ..+.+.++|++|+|||++|+.+++... ...+ ...+.++.+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~-------- 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERG-------- 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTC--------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccC--------
Confidence 35899999999998887543 223388999999999999999987321 1111 1123344333111
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHH--h-CCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchh-hhhcc-C
Q 048507 267 LRSVTKQTIDDSDLNLLQEELKKK--L-SQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQE-VADIM-G 341 (1448)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~l~~~--l-~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~-~ 341 (1448)
..........+... + .+++.++|+|+++.........+...+.....++++|+||.... +...+ .
T Consensus 82 ----------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 82 ----------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp ----------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred ----------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 01111111111111 1 25678999999976655556666666665556778888776543 22111 2
Q ss_pred CcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchHHHHHH
Q 048507 342 TASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPLAAQTL 392 (1448)
Q Consensus 342 ~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal~~~ 392 (1448)
....+++.+++.++..+++...+.... ...++....|++.++|.+-.+...
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 234799999999999998876653222 334567788999999998765443
No 164
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.44 E-value=7.7e-07 Score=104.46 Aligned_cols=194 Identities=14% Similarity=0.130 Sum_probs=113.0
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.+++||+..++.+..++..+. ..+.+.|+|++|+||||+|+.+++.......+.. ..+... .....+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~----~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVC----DNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSSS----HHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCccc----HHHHHHh
Confidence 358999999999999997542 2357889999999999999999864321111100 000000 0011111
Q ss_pred Hhc-------cCCC-CCCCCHHHHHHHHHHH-hCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchh-hh
Q 048507 268 RSV-------TKQT-IDDSDLNLLQEELKKK-LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQE-VA 337 (1448)
Q Consensus 268 ~~l-------~~~~-~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~ 337 (1448)
... .... ....+...+.+.+... ..+++.+||+||++.........+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 100 0000 1112222222221111 135678999999976655556666555555445677777775432 22
Q ss_pred hcc-CCcceEeCCCCCHHHHHHHHhhcccCC-chhhHHHHHHHHHhcCCchHHHHHHH
Q 048507 338 DIM-GTASAYQLKKLSIDDCLAVVAQHSLGS-DKLLEEIGKKIVAKCDGLPLAAQTLG 393 (1448)
Q Consensus 338 ~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~-~~~~~~~~~~i~~~~~g~PLal~~~~ 393 (1448)
..+ .....+++.+++.++..+++...+... .....+....|++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 111 223578999999999999887654211 12235667889999999998776554
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.41 E-value=8.5e-06 Score=96.00 Aligned_cols=190 Identities=14% Similarity=0.104 Sum_probs=103.9
Q ss_pred hhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEecCccCcccc-ccccCCCC
Q 048507 1177 ERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEISDCNRLEAL-PKGLHNLK 1255 (1448)
Q Consensus 1177 ~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~-p~~l~~l~ 1255 (1448)
..|.++++|+.+.+..+ ....-...+.++..|+.+.+..+ ...+........+|+.+.+... ...+ ...+.+++
T Consensus 179 ~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~ 253 (394)
T 4fs7_A 179 GLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNIIIPDS--FTELGKSVFYGCT 253 (394)
T ss_dssp TTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEEEECTT--CCEECSSTTTTCS
T ss_pred ccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC--ceEeehhhcccCCCceEEECCC--ceecccccccccc
Confidence 35666666666666543 22222345566666666666542 2333444444566666666542 1222 23456666
Q ss_pred cccceecccCCCccccCCC--CCccceeeecccccccccccccCCccccCCCccEEEEecCCCcCccccccccccCCCCC
Q 048507 1256 SLQELRIGVELPSLEEDGL--PTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDMVSFPLEDKRLGTALP 1333 (1448)
Q Consensus 1256 ~L~~L~l~~~l~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~p~~~~~~~~~~~ 1333 (1448)
.|+.+.+..++..+....+ ..+++.+....+ ......|..+.+|+.+.+.. .+..++ ..+|.
T Consensus 254 ~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~-------~i~~~~F~~~~~L~~i~l~~---~i~~I~------~~aF~ 317 (394)
T 4fs7_A 254 DLESISIQNNKLRIGGSLFYNCSGLKKVIYGSV-------IVPEKTFYGCSSLTEVKLLD---SVKFIG------EEAFE 317 (394)
T ss_dssp SCCEEEECCTTCEECSCTTTTCTTCCEEEECSS-------EECTTTTTTCTTCCEEEECT---TCCEEC------TTTTT
T ss_pred cceeEEcCCCcceeeccccccccccceeccCce-------eecccccccccccccccccc---ccceec------hhhhc
Confidence 6666666444444443332 244444444332 23344666777777777754 233333 23466
Q ss_pred CCCCcCeEEEccCCCCccccc-cccCCCCCCeEeecCCCCCCcCCCCCC--cccccceecc
Q 048507 1334 LPASLTTLWIYNFPNLERLSS-SIVDLQNLTELRLLNCPKLKYFPEKGL--PSSLLQLSIY 1391 (1448)
Q Consensus 1334 ~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~--~~~L~~L~i~ 1391 (1448)
.+++|+.++|.+ .++.++. .|.+|.+|+++++.. +++.++...+ .++|+.+++.
T Consensus 318 ~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 318 SCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred CCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence 777777777754 3666653 566777777777754 2666666544 3566666654
No 166
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.28 E-value=9.1e-06 Score=93.52 Aligned_cols=176 Identities=18% Similarity=0.167 Sum_probs=103.4
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.+++|++..++++..++..... .......|.|+|++|+|||++|+.+++. ....| +.+++.....
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~~--------- 93 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIEK--------- 93 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCCS---------
T ss_pred HHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhccc---------
Confidence 4689999999999988865311 1123456889999999999999999873 22222 3333322211
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccCC------------------CCCcEEEE
Q 048507 268 RSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEAG------------------APGSKIIV 329 (1448)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~------------------~~gs~ilv 329 (1448)
.......+.. ..+..+|++|+++.........+...+... .++.++|.
T Consensus 94 ------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 94 ------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp ------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred ------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 1111111111 235678889998665433333333222211 11345666
Q ss_pred EcCchh-hhhcc--CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchHHHHHH
Q 048507 330 TTRNQE-VADIM--GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPLAAQTL 392 (1448)
Q Consensus 330 TtR~~~-v~~~~--~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal~~~ 392 (1448)
+|.... +...+ .....+++.+++.++...++...+.... ...++..+.|++.+.|.|-.+..+
T Consensus 160 atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHH
T ss_pred eCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHH
Confidence 555432 21111 1235799999999999998877653222 234567788999999999555443
No 167
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.22 E-value=1.5e-06 Score=91.18 Aligned_cols=45 Identities=27% Similarity=0.406 Sum_probs=38.1
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
..++||+++++++.+++... ..+.+.|+|++|+|||++|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999998543 3456789999999999999999874
No 168
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.21 E-value=1.7e-06 Score=100.22 Aligned_cols=84 Identities=17% Similarity=0.106 Sum_probs=61.1
Q ss_pred cccEEEEec-CCCchhhhhhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEe
Q 048507 1160 SLKSLRVWD-CPKLESIAERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEI 1238 (1448)
Q Consensus 1160 ~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l 1238 (1448)
+|+.|+|++ |.+.+..+..|.++++|+.|+|++|.+.+..|..|.++++|+.|+|++| .++.+|...+....|+.|+|
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~L~~l~l 110 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVL 110 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCCCCEEEC
T ss_pred CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcccCCceEEEe
Confidence 688888876 6655555567888888888888888777777777788888888888875 45566665554444888888
Q ss_pred cCccCc
Q 048507 1239 SDCNRL 1244 (1448)
Q Consensus 1239 ~~~~~~ 1244 (1448)
.+|+..
T Consensus 111 ~~N~~~ 116 (347)
T 2ifg_A 111 SGNPLH 116 (347)
T ss_dssp CSSCCC
T ss_pred eCCCcc
Confidence 887654
No 169
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.17 E-value=6.6e-07 Score=97.72 Aligned_cols=172 Identities=16% Similarity=0.107 Sum_probs=97.6
Q ss_pred eEeccc---hhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHH
Q 048507 189 QVYGRE---TEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKT 265 (1448)
Q Consensus 189 ~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 265 (1448)
.|+|++ ..++.+..+.... ..+.+.|+|++|+||||+|+.+++.. ......+.|+++.....
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~~--~~~~~~~~~~~~~~~~~------- 93 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACARA--NELERRSFYIPLGIHAS------- 93 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEGGGGGG-------
T ss_pred hccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEHHHHHH-------
Confidence 466632 4555565555332 34678899999999999999998732 22233466776643211
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhh--HhhhcccccC-CCCC-cEEEEEcCchh------
Q 048507 266 ILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYND--WVRLSRPFEA-GAPG-SKIIVTTRNQE------ 335 (1448)
Q Consensus 266 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~--~~~l~~~l~~-~~~g-s~ilvTtR~~~------ 335 (1448)
.+. +.+ +.+ .++.+||+||++...... ...+...+.. ...+ .++|+||+...
T Consensus 94 ---~~~-------------~~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~ 155 (242)
T 3bos_A 94 ---IST-------------ALL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFV 155 (242)
T ss_dssp ---SCG-------------GGG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCC
T ss_pred ---HHH-------------HHH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHh
Confidence 000 000 011 346799999996543222 2222222211 0112 24777776422
Q ss_pred ---hhhccCCcceEeCCCCCHHHHHHHHhhcccCC-chhhHHHHHHHHHhcCCchHHHHHHH
Q 048507 336 ---VADIMGTASAYQLKKLSIDDCLAVVAQHSLGS-DKLLEEIGKKIVAKCDGLPLAAQTLG 393 (1448)
Q Consensus 336 ---v~~~~~~~~~~~l~~l~~~~a~~l~~~~~~~~-~~~~~~~~~~i~~~~~g~PLal~~~~ 393 (1448)
+...+.....+++.+++.++..+++...+... ....++....|++.++|.+-.+..+.
T Consensus 156 ~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 156 LPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 11111112578999999999999988765311 12345677889999999887665443
No 170
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.14 E-value=4.4e-06 Score=97.04 Aligned_cols=194 Identities=14% Similarity=0.147 Sum_probs=111.1
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccc-eEEEEEeCCccCHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFD-LKAWTCVSDDFDVKGLTKTI 266 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 266 (1448)
..++|++..++.+..++.... ...+.|+|++|+||||+|+.+++.......+. .++.++.+.......+ ++.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTH
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHH
Confidence 458999999999999985432 22388999999999999999987421111111 2333444433233222 111
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchh-hhhcc-CCcc
Q 048507 267 LRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQE-VADIM-GTAS 344 (1448)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~-~~~~ 344 (1448)
............... .....-.+++-+|++|+++.........+...+.......++|++|.... +...+ ....
T Consensus 110 ~~~~~~~~~~~~~~~----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~ 185 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCS 185 (353)
T ss_dssp HHHHHHSCCCCCCTT----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSE
T ss_pred HHHHhhhcccccchh----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCc
Confidence 111110000000000 00011123557999999966554445555555544445667777765432 21111 1124
Q ss_pred eEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchHHHHHH
Q 048507 345 AYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPLAAQTL 392 (1448)
Q Consensus 345 ~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal~~~ 392 (1448)
.+++.+++.++....+...+.... ...++..+.|++.++|.|-.+..+
T Consensus 186 ~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 186 KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 789999999999988877543221 234567888999999998765443
No 171
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.13 E-value=1.2e-07 Score=110.01 Aligned_cols=104 Identities=15% Similarity=0.118 Sum_probs=56.3
Q ss_pred ccccEEEEecCCCchhhhhh----cc-cCCccceeeecccccccccCcc-cCCCCCccEEEcccCCCccc----cCCCC-
Q 048507 1159 ESLKSLRVWDCPKLESIAER----LD-NNTSLEIIRIAYCENLKILPSG-LHNLRQLQEIEIRRCGNLVS----FPKGG- 1227 (1448)
Q Consensus 1159 ~~L~~L~L~~~~~~~~~~~~----~~-~l~~L~~L~Ls~n~~~~~~p~~-l~~l~~L~~L~L~~~~~l~~----lp~~~- 1227 (1448)
++|++|+|++|......... +. +.++|++|+|++|.+...-... ...+++|+.|+|++|..... +...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 36777777777765433322 22 2367888888877654322222 23356777788877643221 11111
Q ss_pred CCCCCccEEEecCccCcc----ccccccCCCCcccceec
Q 048507 1228 LPGAKLTRLEISDCNRLE----ALPKGLHNLKSLQELRI 1262 (1448)
Q Consensus 1228 ~~~~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~l 1262 (1448)
...++|++|+|++|.+.. .++..+...++|++|++
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~L 190 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSL 190 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEEC
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeC
Confidence 134577788887776432 23334455555665555
No 172
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.07 E-value=3e-07 Score=106.51 Aligned_cols=100 Identities=22% Similarity=0.318 Sum_probs=50.3
Q ss_pred cCceeEEEeCCCCcccc-----Ccccc-CCccceEEeccCccccc--cChhhhccccccEEeccCCchhhcccccc----
Q 048507 594 LQRLRVFSLRGYRIDEL-----PDSIG-DLRYFRYLNLSGTEIRT--LPESVNKLYNLHSLLLEDCDRLKKLCADM---- 661 (1448)
Q Consensus 594 l~~L~~L~L~~n~i~~l-----p~~i~-~l~~L~~L~Ls~n~i~~--lp~~i~~L~~L~~L~L~~n~~~~~lp~~i---- 661 (1448)
++.|+.|+|++|.++.. ...+. ...+|++|+|++|.|.. +..-...+.+|++|+|++|.....-...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 34566677777666532 22222 22567777777776652 22222345666777777663322211222
Q ss_pred -cccCCCCeeeecCCCCccc-----cccccCcccccccc
Q 048507 662 -GNLAKLHHLKNSNTKSLEE-----MPVGIGRLTSLQTL 694 (1448)
Q Consensus 662 -~~L~~L~~L~l~~~~~l~~-----~p~~i~~L~~L~~L 694 (1448)
...++|++|+|++|. ++. ++..+..+++|++|
T Consensus 151 ~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L 188 (372)
T 3un9_A 151 LHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHL 188 (372)
T ss_dssp HSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEE
T ss_pred HhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEE
Confidence 234567777777666 332 22223444555555
No 173
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.06 E-value=7.4e-06 Score=91.69 Aligned_cols=186 Identities=15% Similarity=0.132 Sum_probs=101.4
Q ss_pred cCeEeccchhHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCH
Q 048507 187 EAQVYGRETEKKDVVELLLRDDLS-------NDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDV 259 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 259 (1448)
-.+++|.+..++++.+.+...... +-...+.+.|+|++|+|||++|+.+++. .... .+.+....-
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~--- 87 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSEL--- 87 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGG---
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHH---
Confidence 346899999999998887431000 0123456889999999999999999873 2222 222332211
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCC-----------Chh---hHhhhccccc--CCCC
Q 048507 260 KGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNE-----------NYN---DWVRLSRPFE--AGAP 323 (1448)
Q Consensus 260 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~~~---~~~~l~~~l~--~~~~ 323 (1448)
... ........+...+......++.+|++|+++.. ... .+..+...+. ....
T Consensus 88 -----------~~~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 155 (285)
T 3h4m_A 88 -----------VKK-FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARG 155 (285)
T ss_dssp -----------CCC-STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSS
T ss_pred -----------HHh-ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 000 00111122222333333456789999999431 001 1111221111 1224
Q ss_pred CcEEEEEcCchhhhh-cc----CCcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCC-chHHHHHH
Q 048507 324 GSKIIVTTRNQEVAD-IM----GTASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDG-LPLAAQTL 392 (1448)
Q Consensus 324 gs~ilvTtR~~~v~~-~~----~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g-~PLal~~~ 392 (1448)
+..||.||....... .. .....+.++..+.++..+++.................+++.+.| .|-.+..+
T Consensus 156 ~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 156 DVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp SEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHH
T ss_pred CEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHH
Confidence 567788887543321 11 12246899999999999999877543321112234567777776 45444443
No 174
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.04 E-value=8.7e-06 Score=98.84 Aligned_cols=196 Identities=16% Similarity=0.172 Sum_probs=107.0
Q ss_pred CeEeccchhHHHHHHHHhcCC-----------CCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCc
Q 048507 188 AQVYGRETEKKDVVELLLRDD-----------LSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDD 256 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~-----------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 256 (1448)
.+++|++..++++.+++.... ..+.+..+.+.|+|++|+|||++|+.+++.. .+ .++.++++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCCc
Confidence 468999999999999996511 0011234789999999999999999999733 12 2344555554
Q ss_pred cCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChh---hHhhhcccccCCCCCcEEEEEcCc
Q 048507 257 FDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYN---DWVRLSRPFEAGAPGSKIIVTTRN 333 (1448)
Q Consensus 257 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~---~~~~l~~~l~~~~~gs~ilvTtR~ 333 (1448)
.... .....+........-..-...... .....+++.+||+|+++..... .+..+...+.. .+..||+++..
T Consensus 114 ~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~ 188 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNE 188 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESC
T ss_pred chHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcC
Confidence 4433 222222222111000000000000 0012356789999999653221 12333332222 23345555543
Q ss_pred hh---hhhccCCcceEeCCCCCHHHHHHHHhhcccCC-chhhHHHHHHHHHhcCC-chHHHHHHH
Q 048507 334 QE---VADIMGTASAYQLKKLSIDDCLAVVAQHSLGS-DKLLEEIGKKIVAKCDG-LPLAAQTLG 393 (1448)
Q Consensus 334 ~~---v~~~~~~~~~~~l~~l~~~~a~~l~~~~~~~~-~~~~~~~~~~i~~~~~g-~PLal~~~~ 393 (1448)
.. +.........+++++++.++..+++...+... ....++....|++.++| .+-++..+.
T Consensus 189 ~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 189 RNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp TTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 22 22211223578999999999988886654211 11223457788999999 455555553
No 175
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.00 E-value=9.2e-06 Score=94.27 Aligned_cols=194 Identities=12% Similarity=0.089 Sum_probs=103.8
Q ss_pred CeEeccchhHHHHHHHH-hcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCc-c-ccc--ccce---------------
Q 048507 188 AQVYGRETEKKDVVELL-LRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDK-R-VQD--HFDL--------------- 247 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-~-~~~--~f~~--------------- 247 (1448)
.+++|++..++.+..++ ..+ .... +.|+|+.|+||||+|+.++... . ..+ .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~-----~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR-----DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT-----CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhCC-----CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 35789998888888877 332 1223 8999999999999999887621 0 000 0000
Q ss_pred -----EEEEEeCCcc-CHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccCC
Q 048507 248 -----KAWTCVSDDF-DVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEAG 321 (1448)
Q Consensus 248 -----~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~ 321 (1448)
.+.+..+... ......+++++.+..... ..... .+. .+.+++-++|+|++...+......+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ----VDFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcc----ccccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 1111111000 000011222222111000 00000 000 01335679999999776555555555555444
Q ss_pred CCCcEEEEEcCchh-hhhcc-CCcceEeCCCCCHHHHHHHHhhcccCCc-hhh-HHHHHHHHHhcCCchHHHHHHH
Q 048507 322 APGSKIIVTTRNQE-VADIM-GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLL-EEIGKKIVAKCDGLPLAAQTLG 393 (1448)
Q Consensus 322 ~~gs~ilvTtR~~~-v~~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~-~~~~~~i~~~~~g~PLal~~~~ 393 (1448)
..+.++|++|.+.. +...+ .....+++.+++.++..+.+...+.... ... ++.+..|++.++|.+-.+..+.
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 45677877776532 22211 2236799999999999998887542111 222 4667889999999886554443
No 176
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.99 E-value=6.7e-05 Score=85.51 Aligned_cols=171 Identities=13% Similarity=0.082 Sum_probs=103.9
Q ss_pred chhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc--------------------ccceEEEEEe
Q 048507 194 ETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQD--------------------HFDLKAWTCV 253 (1448)
Q Consensus 194 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~~ 253 (1448)
++..+.+...+..+. -.+.+.++|+.|+|||++|+.+++...... +++ ..++..
T Consensus 8 ~~~~~~l~~~i~~~~-----~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcCC-----cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 455667777775432 346789999999999999999886321111 111 122221
Q ss_pred CCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH----hCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEE
Q 048507 254 SDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKK----LSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIV 329 (1448)
Q Consensus 254 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv 329 (1448)
.. .......+++.+.+... ..+++-++|+|+++.........+...+.....++.+|+
T Consensus 82 ~~------------------~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il 143 (334)
T 1a5t_A 82 EK------------------GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFL 143 (334)
T ss_dssp CT------------------TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEE
T ss_pred cc------------------cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEE
Confidence 10 00112233332222221 124678999999977655555666666655556677777
Q ss_pred EcCchh-hhhcc-CCcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCchHHHHHH
Q 048507 330 TTRNQE-VADIM-GTASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGLPLAAQTL 392 (1448)
Q Consensus 330 TtR~~~-v~~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 392 (1448)
+|...+ +...+ .-...+++.+++.++..+.+.... ...++.+..+++.++|.|..+..+
T Consensus 144 ~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 144 ATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----TMSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----CCCHHHHHHHHHHTTTCHHHHHHT
T ss_pred EeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 766543 32222 223579999999999999998775 122456678999999999766443
No 177
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.98 E-value=5.1e-05 Score=88.46 Aligned_cols=197 Identities=15% Similarity=0.104 Sum_probs=104.6
Q ss_pred CeEeccchhHHH---HHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeC----CccCHH
Q 048507 188 AQVYGRETEKKD---VVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVS----DDFDVK 260 (1448)
Q Consensus 188 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~----~~~~~~ 260 (1448)
..|+|++..++. +.+.+.... ...+.+.|+|++|+|||++|+.+++.......| +.+... ......
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~~~ 116 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF---TAIAGSEIFSLEMSKT 116 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE---EEEEGGGGSCSSSCHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc---ccccchhhhhcccchh
Confidence 469999988766 455554331 224688999999999999999999743211121 222221 122333
Q ss_pred HHHHHHHHhccCC---------------------------CC---CCCCHHHHHHHHHHHh-----CCc----cEEEEEe
Q 048507 261 GLTKTILRSVTKQ---------------------------TI---DDSDLNLLQEELKKKL-----SQK----KFLLVLD 301 (1448)
Q Consensus 261 ~~~~~i~~~l~~~---------------------------~~---~~~~~~~~~~~l~~~l-----~~~----~~LlVlD 301 (1448)
+...+........ .. ...-...+.+.+.+.. .++ +.+|++|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ID 196 (368)
T 3uk6_A 117 EALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFID 196 (368)
T ss_dssp HHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEh
Confidence 3433333321100 00 0000122222222211 133 3599999
Q ss_pred cCCCCChhhHhhhcccccCCCCCcEEEEEcC-ch------------hhhhc-cCCcceEeCCCCCHHHHHHHHhhcccCC
Q 048507 302 DVWNENYNDWVRLSRPFEAGAPGSKIIVTTR-NQ------------EVADI-MGTASAYQLKKLSIDDCLAVVAQHSLGS 367 (1448)
Q Consensus 302 dv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR-~~------------~v~~~-~~~~~~~~l~~l~~~~a~~l~~~~~~~~ 367 (1448)
+++.........+...+...... .++++|. .. .+... ..-...+.+.+++.++..+++...+...
T Consensus 197 Ei~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 197 EVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp SGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred hccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHc
Confidence 99766555555555544443333 3444442 11 11111 1112357999999999999998665322
Q ss_pred -chhhHHHHHHHHHhcC-CchHHHHHH
Q 048507 368 -DKLLEEIGKKIVAKCD-GLPLAAQTL 392 (1448)
Q Consensus 368 -~~~~~~~~~~i~~~~~-g~PLal~~~ 392 (1448)
....++....|++.+. |.|-.+..+
T Consensus 276 ~~~~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 276 DVEMSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp TCCBCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCHHHHHHH
Confidence 1334567788888887 777654433
No 178
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.97 E-value=0.00035 Score=82.04 Aligned_cols=85 Identities=16% Similarity=0.194 Sum_probs=43.8
Q ss_pred CCcccccc-CCcceEeecCCCCccccchhhhhHHHhhhhhhccccceEEecccC--Ccccccc-ccCccCCcceeeeccC
Q 048507 952 HDGLLQDI-CSLKRLTIDSCPTLQSLVAEEEKDQQQQLCELSCRLEYLELNECK--GLVKLPQ-SSLSLSSLREIEICGC 1027 (1448)
Q Consensus 952 ~~~~~~~l-~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~--~l~~lp~-~~~~l~~L~~L~L~~c 1027 (1448)
....|.++ ..|+.+.+.+ .++.+....|. .+.+|+.+.+..+. .++.+.. .|..+.+|+.+.+.+
T Consensus 55 g~~aF~~~~~~L~sI~iP~--svt~Ig~~AF~--------~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~- 123 (394)
T 4gt6_A 55 GDRVFCNYKYVLTSVQIPD--TVTEIGSNAFY--------NCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD- 123 (394)
T ss_dssp CTTTTTTCCSCCCEEEECT--TCCEECTTTTT--------TCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT-
T ss_pred CHhhccCCCCcCEEEEECC--CeeEEhHHHhh--------CCccCceEeecCCCCCeeeEechhhchhcccceeeccCC-
Confidence 34555555 3578887764 35555544332 24567777766542 2344432 455566666655543
Q ss_pred CCCcccCC--CCCccccceeEec
Q 048507 1028 SSLVSFPE--VALPAKLRIISIN 1048 (1448)
Q Consensus 1028 ~~l~~~~~--~~~~~~L~~L~l~ 1048 (1448)
.+..++. +..+.+|+.+.+.
T Consensus 124 -~~~~I~~~aF~~c~~L~~i~lp 145 (394)
T 4gt6_A 124 -SVTEIDSEAFHHCEELDTVTIP 145 (394)
T ss_dssp -TCSEECTTTTTTCTTCCEEECC
T ss_pred -ccceehhhhhhhhccccccccc
Confidence 2344433 2234556655553
No 179
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.96 E-value=5.6e-05 Score=89.03 Aligned_cols=174 Identities=21% Similarity=0.213 Sum_probs=100.5
Q ss_pred CeEeccchhH---HHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHH
Q 048507 188 AQVYGRETEK---KDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTK 264 (1448)
Q Consensus 188 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 264 (1448)
.+++|.+..+ ..+...+... ..+.+.|+|++|+||||+|+.+++. ....| +.+++.. ..... .+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f---~~l~a~~-~~~~~-ir 92 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANADV---ERISAVT-SGVKE-IR 92 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCEE---EEEETTT-CCHHH-HH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEEecc-CCHHH-HH
Confidence 4578988887 6777777654 3467899999999999999999973 32222 1222211 11211 11
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEE-EcCchh--hhhc-c
Q 048507 265 TILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIV-TTRNQE--VADI-M 340 (1448)
Q Consensus 265 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~--v~~~-~ 340 (1448)
.++.. .......+++.+|++|+++.........+...+.. ....+|. ||.+.. +... .
T Consensus 93 ~~~~~----------------a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~ 154 (447)
T 3pvs_A 93 EAIER----------------ARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALL 154 (447)
T ss_dssp HHHHH----------------HHHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHH
T ss_pred HHHHH----------------HHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHh
Confidence 11111 11111246788999999976544444444444433 1233333 555542 1111 1
Q ss_pred CCcceEeCCCCCHHHHHHHHhhcccC-------C-chhhHHHHHHHHHhcCCchHHHHHH
Q 048507 341 GTASAYQLKKLSIDDCLAVVAQHSLG-------S-DKLLEEIGKKIVAKCDGLPLAAQTL 392 (1448)
Q Consensus 341 ~~~~~~~l~~l~~~~a~~l~~~~~~~-------~-~~~~~~~~~~i~~~~~g~PLal~~~ 392 (1448)
.-..++.+++++.++...++.+.... . ....++..+.|++.++|.+-.+..+
T Consensus 155 sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 155 SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 22357899999999999988775432 1 1344667788999999988655433
No 180
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.95 E-value=1.4e-05 Score=94.65 Aligned_cols=159 Identities=18% Similarity=0.176 Sum_probs=93.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccc--ceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHF--DLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLS 292 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 292 (1448)
...+.|+|++|+||||||+.+++. ....+ ..++++++. .+..++...+... .. ..+.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----~~----~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----KL----NEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----CH----HHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----cH----HHHHHHhc
Confidence 567899999999999999999973 32222 234555543 2334444444321 11 12333344
Q ss_pred CccEEEEEecCCCCCh--hhHhhhcccccC-CCCCcEEEEEcCchh---------hhhccCCcceEeCCCCCHHHHHHHH
Q 048507 293 QKKFLLVLDDVWNENY--NDWVRLSRPFEA-GAPGSKIIVTTRNQE---------VADIMGTASAYQLKKLSIDDCLAVV 360 (1448)
Q Consensus 293 ~~~~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~l~~~~a~~l~ 360 (1448)
.++-+|++||++.... ...+.+...+.. ...|..||+||.... +...+.....+.+++++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 3677999999965432 122223222211 134678888887521 1222333357899999999999988
Q ss_pred hhcccCCc-hhhHHHHHHHHHhcCCchHHHH
Q 048507 361 AQHSLGSD-KLLEEIGKKIVAKCDGLPLAAQ 390 (1448)
Q Consensus 361 ~~~~~~~~-~~~~~~~~~i~~~~~g~PLal~ 390 (1448)
.+.+.... ...+++...|++.++|.+-.+.
T Consensus 273 ~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 273 RKMLEIEHGELPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHHTCCCCTTHHHHHHHHCCSCHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHhcCCCHHHHH
Confidence 77653111 1223556778889999886543
No 181
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.94 E-value=1.5e-05 Score=91.27 Aligned_cols=59 Identities=20% Similarity=0.220 Sum_probs=32.6
Q ss_pred ccccEEEEecCCCchhhhhhc---ccCCccceeeecccccccc----cCcccCCCCCccEEEcccC
Q 048507 1159 ESLKSLRVWDCPKLESIAERL---DNNTSLEIIRIAYCENLKI----LPSGLHNLRQLQEIEIRRC 1217 (1448)
Q Consensus 1159 ~~L~~L~L~~~~~~~~~~~~~---~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~L~~~ 1217 (1448)
++|++|+|++|......+..+ ..+++|++|+|+.|.+... ++..+..+++|+.|+|++|
T Consensus 252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 377777777776654333222 2456666666666554432 3333344556666666555
No 182
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.91 E-value=0.00011 Score=81.02 Aligned_cols=185 Identities=12% Similarity=0.098 Sum_probs=97.6
Q ss_pred CeEeccchhHHHHHHHHhc---CCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHH
Q 048507 188 AQVYGRETEKKDVVELLLR---DDL---SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKG 261 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~---~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1448)
.+++|.+..++++.+.+.. ... .+....+.+.|+|++|+|||++|+.+++. .... .+.+.++.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~--- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVE--- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSS---
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHh---
Confidence 4578998888777665432 110 01123456889999999999999999873 2222 33444443211
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCC------------h---hhHhhhcccccC--CCCC
Q 048507 262 LTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNEN------------Y---NDWVRLSRPFEA--GAPG 324 (1448)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------------~---~~~~~l~~~l~~--~~~g 324 (1448)
.........+...+.......+.+|++|+++... . .....+...+.. ...+
T Consensus 78 ------------~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 78 ------------VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp ------------SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred ------------hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 0001111222233333334567899999996531 0 111222222221 1235
Q ss_pred cEEEEEcCchhhh-hcc----CCcceEeCCCCCHHHHHHHHhhcccCC--chhhHHHHHHHHHhcCCchH-HHHHH
Q 048507 325 SKIIVTTRNQEVA-DIM----GTASAYQLKKLSIDDCLAVVAQHSLGS--DKLLEEIGKKIVAKCDGLPL-AAQTL 392 (1448)
Q Consensus 325 s~ilvTtR~~~v~-~~~----~~~~~~~l~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~g~PL-al~~~ 392 (1448)
..||.||...... ..+ .....+.++..+.++..+++..++... ..........+++.+.|.+- .|..+
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 5666677554321 111 122467899999999998887754321 12222234778888888654 44444
No 183
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.91 E-value=5.5e-06 Score=94.87 Aligned_cols=166 Identities=19% Similarity=0.134 Sum_probs=82.6
Q ss_pred cccCCccceeeeccccc---------ccccCcccCCCCCccEEEcccCCCccccCCCCCCCCCccEEEecCccCcccccc
Q 048507 1179 LDNNTSLEIIRIAYCEN---------LKILPSGLHNLRQLQEIEIRRCGNLVSFPKGGLPGAKLTRLEISDCNRLEALPK 1249 (1448)
Q Consensus 1179 ~~~l~~L~~L~Ls~n~~---------~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~p~ 1249 (1448)
...+++|+.|.|.+... .+.+...+..+|+|+.|+|++|..+ .++. + ..++|++|+|..|........
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 44556666666654321 1123344456778888888876333 3333 2 367888888877664332222
Q ss_pred cc--CCCCcccceeccc--CCCccccCCCCCccceeeecccccccccccccCCccccCCCccEEEEecCCCcCccccccc
Q 048507 1250 GL--HNLKSLQELRIGV--ELPSLEEDGLPTNLHSLGIRGNMEIWKSTIERGRGFHRFSSLQHLTIEGCDDDMVSFPLED 1325 (1448)
Q Consensus 1250 ~l--~~l~~L~~L~l~~--~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~p~~~ 1325 (1448)
.+ ..+++|+.|+|.. +... .. .....+ ...-.-..+++|++|++++|... ...+...
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~-~~-~~~~~l----------------~~~l~~~~~p~Lr~L~L~~~~i~-~~~~~~l 272 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYG-FD-GDMNVF----------------RPLFSKDRFPNLKWLGIVDAEEQ-NVVVEMF 272 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGT-CC-SCGGGT----------------GGGSCTTTCTTCCEEEEESCTTH-HHHHHHH
T ss_pred HHHHccCCCCcEEEEeccccccc-cc-hhHHHH----------------HHHHhcCCCCCcCEEeCCCCCCc-hHHHHHH
Confidence 22 2566666666521 0000 00 000000 00001124678888888876321 1011001
Q ss_pred cccCCCCCCCCCcCeEEEccCCCCcc-----ccccccCCCCCCeEeecCCC
Q 048507 1326 KRLGTALPLPASLTTLWIYNFPNLER-----LSSSIVDLQNLTELRLLNCP 1371 (1448)
Q Consensus 1326 ~~~~~~~~~~~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~c~ 1371 (1448)
. . ...+++|+.|+|+.| .++. ++..+..+++|+.|++++|.
T Consensus 273 a---~-a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 273 L---E-SDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp H---H-CSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred H---h-CccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 0 0 023567888888764 4443 45555567788888887763
No 184
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.88 E-value=0.00038 Score=81.78 Aligned_cols=110 Identities=13% Similarity=0.191 Sum_probs=63.4
Q ss_pred ccCCccccccCCcceEeecCC--CCccccchhhhhHHHhhhhhhccccceEEecccCCccccc-cccCccCCcceeeecc
Q 048507 950 KSHDGLLQDICSLKRLTIDSC--PTLQSLVAEEEKDQQQQLCELSCRLEYLELNECKGLVKLP-QSSLSLSSLREIEICG 1026 (1448)
Q Consensus 950 ~~~~~~~~~l~~L~~L~l~~~--~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~L~~ 1026 (1448)
......|.++.+|+.+.+..+ ..++.+....|. .+.+|+.+.+.+ .+..++ ..+..+.+|+.+.+..
T Consensus 77 ~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~--------~c~~L~~i~~~~--~~~~I~~~aF~~c~~L~~i~lp~ 146 (394)
T 4gt6_A 77 EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFM--------FCSELTDIPILD--SVTEIDSEAFHHCEELDTVTIPE 146 (394)
T ss_dssp EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTT--------TCTTCCBCGGGT--TCSEECTTTTTTCTTCCEEECCT
T ss_pred EEhHHHhhCCccCceEeecCCCCCeeeEechhhch--------hcccceeeccCC--ccceehhhhhhhhcccccccccc
Confidence 344567888889999988653 345555554332 234566655543 233343 3567888899888865
Q ss_pred CCCCcccCC--CCCccccceeEecccCCCCccchhhccCCCCCcceEEEec
Q 048507 1027 CSSLVSFPE--VALPAKLRIISINSCDALKWLPEAWMCDFNSSLEILSIEC 1075 (1448)
Q Consensus 1027 c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~L~~L~l~~ 1075 (1448)
.+..++. +..+.+|+.+.+..+ +..+..... ....|+.+.+..
T Consensus 147 --~~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF--~~~~l~~i~ip~ 191 (394)
T 4gt6_A 147 --GVTSVADGMFSYCYSLHTVTLPDS--VTAIEERAF--TGTALTQIHIPA 191 (394)
T ss_dssp --TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTT--TTCCCSEEEECT
T ss_pred --eeeeecccceecccccccccccce--eeEeccccc--cccceeEEEECC
Confidence 3445544 334667777777542 344443322 234566666643
No 185
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.85 E-value=0.00011 Score=81.23 Aligned_cols=170 Identities=14% Similarity=0.143 Sum_probs=90.4
Q ss_pred eEeccchhHHHHHH-------HHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHH
Q 048507 189 QVYGRETEKKDVVE-------LLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKG 261 (1448)
Q Consensus 189 ~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1448)
.++|+...++++.. .+... .....+.+.|+|++|+|||++|+.+++. ....| +.+.....
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~~~~~----- 100 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKICSPDK----- 100 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEECGGG-----
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEeCHHH-----
Confidence 46777777666665 33221 1235678899999999999999999973 22222 22332210
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCC---------ChhhH-hhhccccc---CCCCCcEEE
Q 048507 262 LTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNE---------NYNDW-VRLSRPFE---AGAPGSKII 328 (1448)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---------~~~~~-~~l~~~l~---~~~~gs~il 328 (1448)
+... ........+...+......++.+|++|+++.. ....+ ..+...+. .......||
T Consensus 101 --------~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii 171 (272)
T 1d2n_A 101 --------MIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLII 171 (272)
T ss_dssp --------CTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEE
T ss_pred --------hcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEE
Confidence 1000 00000112223333344466889999998431 01111 22222221 122344567
Q ss_pred EEcCchhhhhcc---C-CcceEeCCCCCH-HHHHHHHhhcccCCchhhHHHHHHHHHhcCC
Q 048507 329 VTTRNQEVADIM---G-TASAYQLKKLSI-DDCLAVVAQHSLGSDKLLEEIGKKIVAKCDG 384 (1448)
Q Consensus 329 vTtR~~~v~~~~---~-~~~~~~l~~l~~-~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g 384 (1448)
.||........+ + -...+++++++. ++...++.... . ..++....|++.+.|
T Consensus 172 ~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-~---~~~~~~~~l~~~~~g 228 (272)
T 1d2n_A 172 GTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-N---FKDKERTTIAQQVKG 228 (272)
T ss_dssp EEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT-C---SCHHHHHHHHHHHTT
T ss_pred EecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC-C---CCHHHHHHHHHHhcC
Confidence 777766443321 1 135688999988 66666665432 1 124556778888877
No 186
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.83 E-value=0.00017 Score=81.73 Aligned_cols=185 Identities=16% Similarity=0.080 Sum_probs=103.1
Q ss_pred CeEeccchhHHHHHHHHhc-------CCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHH
Q 048507 188 AQVYGRETEKKDVVELLLR-------DDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVK 260 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~-------~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1448)
.+++|.+..++++.+++.. ... .....+.+.++|++|+|||++|+++++. ....| +.++++
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~~------ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEchH------
Confidence 4689999999999887731 001 1223467889999999999999999873 22222 223321
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCCh-----------hhHhhhcccc---cCCCCCcE
Q 048507 261 GLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENY-----------NDWVRLSRPF---EAGAPGSK 326 (1448)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-----------~~~~~l~~~l---~~~~~gs~ 326 (1448)
+ +..... ......+...+...-..++.+|++|+++.... .....+...+ .....+..
T Consensus 86 ~----l~~~~~-----g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 156 (322)
T 3eie_A 86 D----LVSKWM-----GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 156 (322)
T ss_dssp H----HHTTTG-----GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEE
T ss_pred H----Hhhccc-----chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceE
Confidence 1 111100 01111222222333345678999999953211 0012222222 12334556
Q ss_pred EEEEcCchhhhh-cc--CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCC-chHHHHHHH
Q 048507 327 IIVTTRNQEVAD-IM--GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDG-LPLAAQTLG 393 (1448)
Q Consensus 327 ilvTtR~~~v~~-~~--~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g-~PLal~~~~ 393 (1448)
||.||....... .+ .-...+.+...+.++-.+++..++.... .........|++.+.| .+-.|..+.
T Consensus 157 vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 157 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 666776533211 11 1224678888999999999988764433 2234567788899887 455555444
No 187
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.81 E-value=4.2e-05 Score=87.28 Aligned_cols=174 Identities=14% Similarity=0.122 Sum_probs=99.5
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.+++|++..++.+.+++..+. ..+++.+.|++|+|||++|+.+++.. . ..++.++.+.. ... ..+..+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~l--~---~~~~~i~~~~~-~~~-~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHDV--N---ADMMFVNGSDC-KID-FVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHHT--T---EEEEEEETTTC-CHH-HHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHh--C---CCEEEEccccc-CHH-HHHHHH
Confidence 468999999999999997542 23577888889999999999998732 2 12344554332 111 111111
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCC-hhhHhhhcccccCCCCCcEEEEEcCchh-hhhcc-CCcc
Q 048507 268 RSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNEN-YNDWVRLSRPFEAGAPGSKIIVTTRNQE-VADIM-GTAS 344 (1448)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~-~~~~ 344 (1448)
....... ...+++.+||+|+++... ......+...+.....+.++|+||.... +...+ .-..
T Consensus 94 ~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~ 158 (324)
T 3u61_B 94 TNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCR 158 (324)
T ss_dssp HHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSE
T ss_pred HHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCc
Confidence 1110000 012367899999997654 3344444444433334667888776543 11111 1124
Q ss_pred eEeCCCCCHHHHHHHHhh-------cccC-CchhhH-HHHHHHHHhcCCchHH
Q 048507 345 AYQLKKLSIDDCLAVVAQ-------HSLG-SDKLLE-EIGKKIVAKCDGLPLA 388 (1448)
Q Consensus 345 ~~~l~~l~~~~a~~l~~~-------~~~~-~~~~~~-~~~~~i~~~~~g~PLa 388 (1448)
.+++++.+.++-.+++.. .+.. .....+ +....|++.++|.+-.
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRK 211 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHH
Confidence 789999998874333221 1110 011123 6677788888886653
No 188
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.81 E-value=0.00054 Score=77.28 Aligned_cols=187 Identities=15% Similarity=0.084 Sum_probs=102.4
Q ss_pred CeEeccchhHHHHHHHHhc---CC---CCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHH
Q 048507 188 AQVYGRETEKKDVVELLLR---DD---LSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKG 261 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~---~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1448)
.+++|.+..++.+.+.+.- .. .......+.|.++|++|+|||++|+++++... ... .+.++.+.-.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~~---~~~i~~~~l~---- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NST---FFSISSSDLV---- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SCE---EEEEECCSSC----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CCc---EEEEEhHHHH----
Confidence 4678999888888876631 00 00112346788999999999999999997320 111 2334433211
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCCh-------hh----Hhhhccccc---CCCCCcEE
Q 048507 262 LTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENY-------ND----WVRLSRPFE---AGAPGSKI 327 (1448)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-------~~----~~~l~~~l~---~~~~gs~i 327 (1448)
.. ........+...+...-..++.+|++|+++.... .. ...+...+. ....+..|
T Consensus 84 ----------~~-~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~v 152 (322)
T 1xwi_A 84 ----------SK-WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 152 (322)
T ss_dssp ----------CS-SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEE
T ss_pred ----------hh-hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEE
Confidence 00 1111222222333333346788999999954200 00 111111111 12244555
Q ss_pred EEEcCchhhh-hcc--CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCc-hHHHHHHH
Q 048507 328 IVTTRNQEVA-DIM--GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGL-PLAAQTLG 393 (1448)
Q Consensus 328 lvTtR~~~v~-~~~--~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~-PLal~~~~ 393 (1448)
|.||...... ..+ .....+.+...+.++..+++..+..... ...+.....|++.+.|. +-.|..+.
T Consensus 153 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 6566543221 111 2234678888899998888887654332 22345678899999887 54565554
No 189
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.77 E-value=7.3e-05 Score=84.68 Aligned_cols=158 Identities=15% Similarity=0.110 Sum_probs=86.8
Q ss_pred eEeccchhHHHHHHHHhcC---------CCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCH
Q 048507 189 QVYGRETEKKDVVELLLRD---------DLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDV 259 (1448)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~---------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 259 (1448)
.++|.+..++.+.+.+... ..........+.|+|++|+|||++|+.+++...........-++.+...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 3678888887777665321 0001234457889999999999999988764322222111122333211
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCC---------ChhhHhhhcccccCCCCCcEEEEE
Q 048507 260 KGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNE---------NYNDWVRLSRPFEAGAPGSKIIVT 330 (1448)
Q Consensus 260 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvT 330 (1448)
.+... ............+... +.-+|++|+++.. .......+...+.....+..||.|
T Consensus 109 ---------~l~~~-~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQ-YIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCS-STTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhh-cccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 11111 1111122222223222 3459999999632 333344455555445556788888
Q ss_pred cCchhh----------hhccCCcceEeCCCCCHHHHHHHHhhcc
Q 048507 331 TRNQEV----------ADIMGTASAYQLKKLSIDDCLAVVAQHS 364 (1448)
Q Consensus 331 tR~~~v----------~~~~~~~~~~~l~~l~~~~a~~l~~~~~ 364 (1448)
|..... ... ....+.+++++.++-.+++...+
T Consensus 176 ~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l 217 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHML 217 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHH
Confidence 764322 111 12578999999999999887654
No 190
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.77 E-value=8.3e-05 Score=85.29 Aligned_cols=173 Identities=16% Similarity=0.197 Sum_probs=101.7
Q ss_pred eEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccc-eEEEEEeCCccCHHHHHHHHH
Q 048507 189 QVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFD-LKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.++|.+..++.+..++..+ +...+.++|++|+||||+|+.++.... ...+. .+.-++.+....
T Consensus 26 ~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~--------- 89 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRG--------- 89 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCS---------
T ss_pred HhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCccccc---------
Confidence 4689888888888888654 222388999999999999999987321 11111 112222222111
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHh------CCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchh-hhhcc
Q 048507 268 RSVTKQTIDDSDLNLLQEELKKKL------SQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQE-VADIM 340 (1448)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~~l------~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~ 340 (1448)
.+.+.+.+.... .+.+-++|+|+++.........+...+......+++|++|.... +...+
T Consensus 90 ------------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i 157 (340)
T 1sxj_C 90 ------------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPAL 157 (340)
T ss_dssp ------------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred ------------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhH
Confidence 222222222211 23467899999966544445555544444445667777665432 21111
Q ss_pred -CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchHHH
Q 048507 341 -GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPLAA 389 (1448)
Q Consensus 341 -~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal 389 (1448)
.-...+++.+++.++..+.+...+.... ...++..+.|++.++|.+--+
T Consensus 158 ~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 158 LSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHH
T ss_pred HhhceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 1224688999999998887776442111 233556778889999987643
No 191
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.76 E-value=0.00029 Score=80.79 Aligned_cols=186 Identities=15% Similarity=0.090 Sum_probs=100.6
Q ss_pred CeEeccchhHHHHHHHHhcC----C--CCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHH
Q 048507 188 AQVYGRETEKKDVVELLLRD----D--LSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKG 261 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1448)
.+++|.+..++.+.+++... . .......+-|.|+|++|+|||++|+++++. ....| +.++++ +
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeHH------H
Confidence 35889999999998877311 0 001122355889999999999999999973 22222 223221 1
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChh-----------hHhhhccccc---CCCCCcEE
Q 048507 262 LTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYN-----------DWVRLSRPFE---AGAPGSKI 327 (1448)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~-----------~~~~l~~~l~---~~~~gs~i 327 (1448)
+..... ......+...+...-..++.+|++|+++..... ....+...+. ....+..|
T Consensus 120 ----l~~~~~-----g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 120 ----LVSKWM-----GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp ----HHSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred ----Hhhhhc-----chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 111111 111222222233333457889999999543210 0112222221 12345556
Q ss_pred EEEcCchhhh-hcc--CCcceEeCCCCCHHHHHHHHhhcccCCch-hhHHHHHHHHHhcCC-chHHHHHHH
Q 048507 328 IVTTRNQEVA-DIM--GTASAYQLKKLSIDDCLAVVAQHSLGSDK-LLEEIGKKIVAKCDG-LPLAAQTLG 393 (1448)
Q Consensus 328 lvTtR~~~v~-~~~--~~~~~~~l~~l~~~~a~~l~~~~~~~~~~-~~~~~~~~i~~~~~g-~PLal~~~~ 393 (1448)
|.||...... ..+ .....+.+...+.++-.+++..+...... ........|++.+.| .+-.|..+.
T Consensus 191 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 6666543211 111 23356788989999988988876543321 234566788899988 454555543
No 192
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.74 E-value=3.3e-05 Score=75.81 Aligned_cols=113 Identities=16% Similarity=0.047 Sum_probs=67.3
Q ss_pred eEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcc-cccccceEEEEEeCCccCHHHHHHHHH
Q 048507 189 QVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKR-VQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
+++|+...++++.+.+..... ...-|.|+|.+|+|||++|+.+++... ....| + +++....+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~---v-~~~~~~~~~-------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEF---V-YRELTPDNA-------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCC---E-EEECCTTTS--------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCE---E-EECCCCCcc--------
Confidence 578999999999988854311 123467999999999999999987421 12222 3 655543221
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCc
Q 048507 268 RSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRN 333 (1448)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 333 (1448)
.... ..+... +.-.|++|+++.........+...+.......++|.||..
T Consensus 66 ----------~~~~---~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ----------PQLN---DFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ----------SCHH---HHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ----------hhhh---cHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 1111 111111 2346899999776555445555554444455678777764
No 193
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.71 E-value=2.1e-05 Score=81.62 Aligned_cols=45 Identities=27% Similarity=0.387 Sum_probs=37.9
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
..++||+.+++++.+++... ..+.+.|+|++|+|||++|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999543 3456789999999999999999873
No 194
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.71 E-value=0.00012 Score=83.39 Aligned_cols=154 Identities=15% Similarity=0.168 Sum_probs=85.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQK 294 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1448)
...+.|+|++|+||||+|+.+++... ..-..++++++. .....+...+.. ..... +.+... +
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~--~~~~~~~~i~~~------~~~~~~~~~~~~-----~~~~~----~~~~~~-~ 98 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAK--KRGYRVIYSSAD------DFAQAMVEHLKK-----GTINE----FRNMYK-S 98 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHH--HTTCCEEEEEHH------HHHHHHHHHHHH-----TCHHH----HHHHHH-T
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEEHH------HHHHHHHHHHHc-----CcHHH----HHHHhc-C
Confidence 45688999999999999999987321 111234555542 233333333321 11122 222222 3
Q ss_pred cEEEEEecCCCCCh--hhHhhhcccccC-CCCCcEEEEEcCchh---------hhhccCCcceEeCCCCCHHHHHHHHhh
Q 048507 295 KFLLVLDDVWNENY--NDWVRLSRPFEA-GAPGSKIIVTTRNQE---------VADIMGTASAYQLKKLSIDDCLAVVAQ 362 (1448)
Q Consensus 295 ~~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~l~~~~a~~l~~~ 362 (1448)
+-+|++||+..... .....+...+.. ...|.+||+||.... +...+.....+++++ +.++..+++..
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 67999999965432 112222222211 123567888775421 111222235689999 99999998887
Q ss_pred cccCCc-hhhHHHHHHHHHhcCCchHH
Q 048507 363 HSLGSD-KLLEEIGKKIVAKCDGLPLA 388 (1448)
Q Consensus 363 ~~~~~~-~~~~~~~~~i~~~~~g~PLa 388 (1448)
.+.... ...+++...|++.+ |..-.
T Consensus 178 ~~~~~~~~l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 178 KLKEFNLELRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHTTCCCCHHHHHHHHHHC-SSHHH
T ss_pred HHHhcCCCCCHHHHHHHHHhC-CCHHH
Confidence 653211 23356677788888 76543
No 195
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.63 E-value=0.00033 Score=80.55 Aligned_cols=186 Identities=13% Similarity=0.076 Sum_probs=100.9
Q ss_pred CeEeccchhHHHHHHHHhcC----CC--CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHH
Q 048507 188 AQVYGRETEKKDVVELLLRD----DL--SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKG 261 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1448)
.+++|.+..++++.+++... .. ......+.|.|+|++|+|||++|+++++. .... .+.++++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGAT---FFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCE---EEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCe---EEEEehHHhhc---
Confidence 45899999999998877420 00 00123467889999999999999999873 2222 33444432111
Q ss_pred HHHHHHHhccCCCCCCCCHHH-HHHHHHHHhCCccEEEEEecCCCCC-----------hhhHhhhcccccC----CCCCc
Q 048507 262 LTKTILRSVTKQTIDDSDLNL-LQEELKKKLSQKKFLLVLDDVWNEN-----------YNDWVRLSRPFEA----GAPGS 325 (1448)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~~~LlVlDdv~~~~-----------~~~~~~l~~~l~~----~~~gs 325 (1448)
. . ...... +...+...-..++.+|+||+++... ......+...+.. ...+.
T Consensus 156 -----------~-~-~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 156 -----------K-W-VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp -----------S-S-TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred -----------c-c-cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 0 0 001111 1122222223567899999983210 0011122222221 12344
Q ss_pred EEEEEcCchh-hhhcc--CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCC-chHHHHHHHh
Q 048507 326 KIIVTTRNQE-VADIM--GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDG-LPLAAQTLGG 394 (1448)
Q Consensus 326 ~ilvTtR~~~-v~~~~--~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g-~PLal~~~~~ 394 (1448)
.||.||.... +...+ .....+.+...+.++..+++...+.... ...++....|++.+.| .+-+|..+..
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5565665432 21111 2224678888899888888876543221 2234567788898888 5556665543
No 196
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.63 E-value=3.2e-05 Score=83.46 Aligned_cols=59 Identities=24% Similarity=0.415 Sum_probs=28.1
Q ss_pred ccCceeEEEeCCCCcccc---CccccCCccceEEeccCccccccChhhhccc--cccEEeccCCc
Q 048507 593 KLQRLRVFSLRGYRIDEL---PDSIGDLRYFRYLNLSGTEIRTLPESVNKLY--NLHSLLLEDCD 652 (1448)
Q Consensus 593 ~l~~L~~L~L~~n~i~~l---p~~i~~l~~L~~L~Ls~n~i~~lp~~i~~L~--~L~~L~L~~n~ 652 (1448)
++++|+.|+|++|.|+.+ |..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTST
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCc
Confidence 445555555555555433 23334455555555555555544 2233333 45555555543
No 197
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.57 E-value=0.00066 Score=76.12 Aligned_cols=184 Identities=11% Similarity=0.056 Sum_probs=97.7
Q ss_pred CeEeccchhHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDL------SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKG 261 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1448)
.+++|.+..++.+.+++..... ......+.+.|+|++|+|||++|+.++.. .... .+.++++.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~---~~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSAT---FLNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCE---EEEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEeeHHHHhh---
Confidence 4589999999999887743100 00112467889999999999999999873 2222 23344432110
Q ss_pred HHHHHHHhccCCCCCCCCHHHHH-HHHHHHhCCccEEEEEecCCCCCh-----------hhHhhhcc---cccCC--CCC
Q 048507 262 LTKTILRSVTKQTIDDSDLNLLQ-EELKKKLSQKKFLLVLDDVWNENY-----------NDWVRLSR---PFEAG--APG 324 (1448)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~~~~-----------~~~~~l~~---~l~~~--~~g 324 (1448)
. . ........ ..+......++.+|++|+++.... .....+.. .++.. +.+
T Consensus 93 -----------~-~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 93 -----------K-Y-VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp -----------S-S-CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------C
T ss_pred -----------c-c-cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCc
Confidence 0 0 11122222 222223345678999999944210 00111111 11111 134
Q ss_pred cEEEEEcCchhhh-hcc--CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchH-HHHHH
Q 048507 325 SKIIVTTRNQEVA-DIM--GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPL-AAQTL 392 (1448)
Q Consensus 325 s~ilvTtR~~~v~-~~~--~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PL-al~~~ 392 (1448)
..||.||...... ..+ .....+.+...+.++...++...+.... ....+....|++.+.|.+- ++..+
T Consensus 160 v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp EEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 5566677654211 110 1224577777788887777766542211 1234567788889988775 55444
No 198
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.57 E-value=0.00075 Score=79.86 Aligned_cols=187 Identities=16% Similarity=0.136 Sum_probs=101.1
Q ss_pred CeEeccchhHHHHHHHHhc----CCC--CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHH
Q 048507 188 AQVYGRETEKKDVVELLLR----DDL--SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKG 261 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~----~~~--~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1448)
.+++|.+..++.+.+++.. ... ......+.|.++|++|+|||++|+++++... . .-++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-~-----~~~~~v~~~~---- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-N-----STFFSISSSD---- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-S-----SEEEEECCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC-C-----CCEEEEeHHH----
Confidence 4588999999988887731 000 0112346788999999999999999997320 1 1223333221
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCCh-------h----hHhhhcccccC---CCCCcEE
Q 048507 262 LTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENY-------N----DWVRLSRPFEA---GAPGSKI 327 (1448)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-------~----~~~~l~~~l~~---~~~gs~i 327 (1448)
+ .....+. .......+ +...-..++.+|++|+++.... . ....+...+.. ...+..|
T Consensus 204 l----~~~~~g~--~~~~~~~~---f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~v 274 (444)
T 2zan_A 204 L----VSKWLGE--SEKLVKNL---FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 274 (444)
T ss_dssp --------------CCCTHHHH---HHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEE
T ss_pred H----Hhhhcch--HHHHHHHH---HHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 1 1111011 11122222 2222235678999999964310 0 11222222222 2345666
Q ss_pred EEEcCchhhhh-cc--CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCc-hHHHHHHH
Q 048507 328 IVTTRNQEVAD-IM--GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGL-PLAAQTLG 393 (1448)
Q Consensus 328 lvTtR~~~v~~-~~--~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~-PLal~~~~ 393 (1448)
|.||....... .+ .....+.+...+.++..+++..+..... ...+.....|++.+.|. +-.|..+.
T Consensus 275 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 275 LGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 66775442211 11 2224677888888888888887654332 12345667888999884 54555443
No 199
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.54 E-value=7.6e-05 Score=76.59 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=62.9
Q ss_pred cchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccC
Q 048507 193 RETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTK 272 (1448)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 272 (1448)
++..++.+.+++..-. ......+.|+|++|+||||||+.++........+ .+++++ ..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~---~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFN---PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCC---GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc---ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcC
Confidence 4445555555554321 1234689999999999999999998743212222 233333 33444444433322
Q ss_pred CCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHh--hhcccccC-CCCCcEEEEEcCc
Q 048507 273 QTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWV--RLSRPFEA-GAPGSKIIVTTRN 333 (1448)
Q Consensus 273 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~ilvTtR~ 333 (1448)
.... ...+.+ . ++-+|||||++....+.|. .+...+.. ...|..+|+||..
T Consensus 89 ~~~~-----~~~~~~----~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 89 GKDT-----KFLKTV----L-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TCCS-----HHHHHH----H-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred chHH-----HHHHHh----c-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 1111 222222 1 4568999999743223332 22222211 1246778888864
No 200
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.53 E-value=0.00049 Score=77.04 Aligned_cols=180 Identities=14% Similarity=0.075 Sum_probs=95.2
Q ss_pred CeEeccchhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDL-------SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVK 260 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1448)
.+++|.+..++++.+++...-. -+-...+.|.|+|++|+|||++|++++.. ....| +.++ ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~~---i~v~------~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQANF---ISIK------GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCEE---EEEC------HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCCE---EEEE------hH
Confidence 4588999888888887642100 00123467899999999999999999973 22222 2222 22
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCCh--------------hhHhhhcccccC--CCCC
Q 048507 261 GLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENY--------------NDWVRLSRPFEA--GAPG 324 (1448)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~g 324 (1448)
++..... +.. ...+...+.......+.+|++|+++.... .....+...+.. ...+
T Consensus 84 ~l~~~~~----g~~-----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 84 ELLTMWF----GES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp HHHHHHH----TTC-----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred HHHhhhc----Cch-----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 2222221 111 11223333333345689999999953100 011222222211 2235
Q ss_pred cEEEEEcCchhhh-hcc-C---CcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCchH
Q 048507 325 SKIIVTTRNQEVA-DIM-G---TASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGLPL 387 (1448)
Q Consensus 325 s~ilvTtR~~~v~-~~~-~---~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~PL 387 (1448)
..||.||...... ..+ . -...+.+...+.++-.+++..+..............+++.+.|.|-
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg 222 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSG 222 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCH
Confidence 6677777654322 111 1 2246889999998888888765432210001112345566666654
No 201
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.51 E-value=7.2e-05 Score=74.31 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=6.1
Q ss_pred CcceEEEecCCCcc
Q 048507 1067 SLEILSIECCRSLT 1080 (1448)
Q Consensus 1067 ~L~~L~l~~c~~l~ 1080 (1448)
+|++|+|++|..++
T Consensus 115 ~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 115 SMLEMEIISCGNVT 128 (176)
T ss_dssp HCCEEEEESCTTCC
T ss_pred CCCEEEcCCCCcCC
Confidence 34444444444443
No 202
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.50 E-value=6.4e-05 Score=74.69 Aligned_cols=88 Identities=11% Similarity=0.105 Sum_probs=53.7
Q ss_pred ccceEEecccCCccccccccCccCCcceeeeccCCCCcccC--CCC----CccccceeEecccCCCCccchhhccCCCCC
Q 048507 994 RLEYLELNECKGLVKLPQSSLSLSSLREIEICGCSSLVSFP--EVA----LPAKLRIISINSCDALKWLPEAWMCDFNSS 1067 (1448)
Q Consensus 994 ~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~~~--~~~----~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~ 1067 (1448)
.|+.|++++|.....--..+..+++|++|+|++|..+++-. ... ..++|++|+|++|..++.-.-.... .+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cCCC
Confidence 45555555555322222344577888888888887665422 111 1357888888888877664433332 4677
Q ss_pred cceEEEecCCCcccc
Q 048507 1068 LEILSIECCRSLTYI 1082 (1448)
Q Consensus 1068 L~~L~l~~c~~l~~~ 1082 (1448)
|++|+|++|+.++..
T Consensus 141 L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 141 LKYLFLSDLPGVKEK 155 (176)
T ss_dssp CCEEEEESCTTCCCH
T ss_pred CCEEECCCCCCCCch
Confidence 788888777766643
No 203
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.49 E-value=2.1e-05 Score=84.91 Aligned_cols=103 Identities=20% Similarity=0.153 Sum_probs=74.1
Q ss_pred ccCceeE--EEeCCCCccccCcc----ccCCccceEEeccCcccccc---ChhhhccccccEEeccCCchhhcccccccc
Q 048507 593 KLQRLRV--FSLRGYRIDELPDS----IGDLRYFRYLNLSGTEIRTL---PESVNKLYNLHSLLLEDCDRLKKLCADMGN 663 (1448)
Q Consensus 593 ~l~~L~~--L~L~~n~i~~lp~~----i~~l~~L~~L~Ls~n~i~~l---p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~ 663 (1448)
..+.|+. ++++.|....++.. ..++++|+.|+|++|.|..+ |..+..+++|++|+|++|. +..+ ..+..
T Consensus 139 ~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~ 216 (267)
T 3rw6_A 139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDK 216 (267)
T ss_dssp GCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGG
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhh
Confidence 4444554 66777765444322 25688999999999999865 4678899999999999974 4444 34566
Q ss_pred cC--CCCeeeecCCCCcccccc-------ccCcccccccccce
Q 048507 664 LA--KLHHLKNSNTKSLEEMPV-------GIGRLTSLQTLCNF 697 (1448)
Q Consensus 664 L~--~L~~L~l~~~~~l~~~p~-------~i~~L~~L~~L~~~ 697 (1448)
+. +|++|+|++|.....+|. .+..+++|+.|+..
T Consensus 217 l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 217 IKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp GTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred cccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence 65 999999999995555552 26678888888543
No 204
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.49 E-value=0.0019 Score=73.33 Aligned_cols=175 Identities=18% Similarity=0.180 Sum_probs=92.2
Q ss_pred eEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHH
Q 048507 189 QVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILR 268 (1448)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 268 (1448)
.++|.+..++.+...+..... .......+.++|++|+||||||+.++... ...|. .....-...
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l--~~~~~---~~sg~~~~~---------- 89 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASEL--QTNIH---VTSGPVLVK---------- 89 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHHH--TCCEE---EEETTTCCS----------
T ss_pred HccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHHh--CCCEE---EEechHhcC----------
Confidence 477888777777766643200 11234578999999999999999998732 21111 111111011
Q ss_pred hccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccCC--------C----------CCcEE-EE
Q 048507 269 SVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEAG--------A----------PGSKI-IV 329 (1448)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~--------~----------~gs~i-lv 329 (1448)
...+...+ ..+ .++-++++|++........+.+...+... + ....+ -.
T Consensus 90 -----------~~~l~~~~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~a 156 (334)
T 1in4_A 90 -----------QGDMAAIL-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGA 156 (334)
T ss_dssp -----------HHHHHHHH-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEE
T ss_pred -----------HHHHHHHH-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEe
Confidence 11111111 112 23446778887543322222221111110 0 01122 23
Q ss_pred EcCchhhhhcc--CCcceEeCCCCCHHHHHHHHhhcccC-CchhhHHHHHHHHHhcCCchHHHHHH
Q 048507 330 TTRNQEVADIM--GTASAYQLKKLSIDDCLAVVAQHSLG-SDKLLEEIGKKIVAKCDGLPLAAQTL 392 (1448)
Q Consensus 330 TtR~~~v~~~~--~~~~~~~l~~l~~~~a~~l~~~~~~~-~~~~~~~~~~~i~~~~~g~PLal~~~ 392 (1448)
|++...+...+ .....+.+++.+.++-.+++.+.+.. .....++.+..|++.+.|.|-.+..+
T Consensus 157 t~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 157 TTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp ESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred cCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHH
Confidence 44443332211 11235789999999999999876521 11344677899999999999654433
No 205
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.49 E-value=0.0003 Score=83.91 Aligned_cols=147 Identities=18% Similarity=0.195 Sum_probs=79.0
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccc---cccc-c-eEEEEEeCCccCHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRV---QDHF-D-LKAWTCVSDDFDVKGL 262 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~f-~-~~~wv~~~~~~~~~~~ 262 (1448)
++++||+.+++++.+.+.... ..-+.++|++|+|||++|+.++..... -... + .++.++++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--------
Confidence 468999999999999996532 234579999999999999999873210 0000 1 12223322
Q ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchhhhhcc--
Q 048507 263 TKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQEVADIM-- 340 (1448)
Q Consensus 263 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~-- 340 (1448)
....+. -.... ...+...-..++.+|++|.- .+....+...+.. ...++|.+|........+
T Consensus 246 -----~~~~g~--~e~~~---~~~~~~~~~~~~~iLfiD~~----~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 246 -----TKYRGE--FEDRL---KKVMDEIRQAGNIILFIDAA----IDASNILKPSLAR--GELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp --------------CTTH---HHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTT
T ss_pred -----ccccch--HHHHH---HHHHHHHHhcCCeEEEEeCc----hhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhc
Confidence 000000 01112 22333333456789999921 1222233333332 245666666554321111
Q ss_pred -----CCcceEeCCCCCHHHHHHHHhhcc
Q 048507 341 -----GTASAYQLKKLSIDDCLAVVAQHS 364 (1448)
Q Consensus 341 -----~~~~~~~l~~l~~~~a~~l~~~~~ 364 (1448)
.-...+.+++.+.++..+++....
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 112468999999999999998654
No 206
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.48 E-value=0.0077 Score=70.14 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=46.8
Q ss_pred hhcccCCccceeeecccccccccCcccCCCCCccEEEcccCCCccccCCC-CCCCCCccEEEecCccCcccc-ccccCCC
Q 048507 1177 ERLDNNTSLEIIRIAYCENLKILPSGLHNLRQLQEIEIRRCGNLVSFPKG-GLPGAKLTRLEISDCNRLEAL-PKGLHNL 1254 (1448)
Q Consensus 1177 ~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~-~~~~~~L~~L~l~~~~~~~~~-p~~l~~l 1254 (1448)
..+.++..|+.+.+..+ ....-...+.++.+|+.+.+.. .+..++.. +..+++|+.+.+.++. +..+ +..|.++
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c 309 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNSA-IETLEPRVFMDC 309 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCTT-CCEECTTTTTTC
T ss_pred ccccCCccceEEEcCCC-ccEeCccccceeehhccccccc--cceeccccccccccccccccccccc-cceehhhhhcCC
Confidence 34566666666666542 2222234455666666666653 24444443 3446667777666543 2333 3456666
Q ss_pred CcccceecccCCCcc
Q 048507 1255 KSLQELRIGVELPSL 1269 (1448)
Q Consensus 1255 ~~L~~L~l~~~l~~~ 1269 (1448)
++|+.+.+.+++..+
T Consensus 310 ~~L~~i~lp~~l~~I 324 (379)
T 4h09_A 310 VKLSSVTLPTALKTI 324 (379)
T ss_dssp TTCCEEECCTTCCEE
T ss_pred CCCCEEEcCccccEE
Confidence 666666664444433
No 207
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.48 E-value=0.0084 Score=69.83 Aligned_cols=61 Identities=8% Similarity=0.111 Sum_probs=33.5
Q ss_pred CccccCCCccEEEEecCCCcCccccccccccCCCCCCCCCcCeEEEccCCCCccccc-cccCCCCCCeEeec
Q 048507 1298 RGFHRFSSLQHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTTLWIYNFPNLERLSS-SIVDLQNLTELRLL 1368 (1448)
Q Consensus 1298 ~~~~~l~~L~~L~l~~c~~~~~~~p~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~ 1368 (1448)
..|.++++|+.+.+.+ +.+..++. .+|..+.+|+.+.|.+ .++.|+. .|.+|++|+++.+.
T Consensus 280 ~aF~~c~~L~~i~l~~--~~i~~I~~------~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 280 LLCSGCSNLTKVVMDN--SAIETLEP------RVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTTTTCTTCCEEEECC--TTCCEECT------TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccccccccccc--cccceehh------hhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 3556666666666654 22333332 2456666666666654 3555543 35566666666553
No 208
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.48 E-value=0.001 Score=77.66 Aligned_cols=186 Identities=12% Similarity=0.080 Sum_probs=98.5
Q ss_pred CeEeccchhHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDL------SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKG 261 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1448)
.+++|.+..++.+.+++..... ......+.|.|+|++|+|||++|+.++.. .... .+.++++.-...
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~---~~~v~~~~l~~~-- 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNAT---FFNISAASLTSK-- 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCE---EEEECSCCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCc---EEEeeHHHhhcc--
Confidence 4689999999999888732100 00112467889999999999999999873 2222 233433322110
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCC-----------hhhHhhhccccc---C-CCCCcE
Q 048507 262 LTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNEN-----------YNDWVRLSRPFE---A-GAPGSK 326 (1448)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------~~~~~~l~~~l~---~-~~~gs~ 326 (1448)
........+...+...-...+.+|+||+++... ......+...+. . ......
T Consensus 188 -------------~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~ 254 (389)
T 3vfd_A 188 -------------YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVL 254 (389)
T ss_dssp -----------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEE
T ss_pred -------------ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEE
Confidence 000111222222232223456899999995320 000111211111 1 123345
Q ss_pred EEEEcCchhhh-hcc--CCcceEeCCCCCHHHHHHHHhhcccCCc-hhhHHHHHHHHHhcCCchH-HHHHHH
Q 048507 327 IIVTTRNQEVA-DIM--GTASAYQLKKLSIDDCLAVVAQHSLGSD-KLLEEIGKKIVAKCDGLPL-AAQTLG 393 (1448)
Q Consensus 327 ilvTtR~~~v~-~~~--~~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~g~PL-al~~~~ 393 (1448)
||.||...... ..+ .....+.+...+.++..+++...+.... ...++....|++.+.|..- +|..+.
T Consensus 255 vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 55566543221 111 1224678888999999888876653322 2334567788888888543 555543
No 209
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.44 E-value=0.00031 Score=78.09 Aligned_cols=149 Identities=8% Similarity=-0.000 Sum_probs=91.3
Q ss_pred ccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcc-cccccceEEEEEeCC-ccCHHHHHHHHHHh
Q 048507 192 GRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKR-VQDHFDLKAWTCVSD-DFDVKGLTKTILRS 269 (1448)
Q Consensus 192 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~ 269 (1448)
|-++.++.+...+..+ +.+...++|++|+||||+|+.+++... .........+++.+. ...+.. .+++.+.
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHH
Confidence 4456677777777543 257889999999999999999986311 111122234444332 222222 1223332
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCch-hhhhccCCcceEeC
Q 048507 270 VTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQ-EVADIMGTASAYQL 348 (1448)
Q Consensus 270 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~l 348 (1448)
+.... ..+++-++|+|+++.........+...+....+.+.+|++|.+. .+...+... .+++
T Consensus 74 ~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 74 LNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp HTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred Hhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 22111 12456799999997766666677776666655677777766443 444444444 8999
Q ss_pred CCCCHHHHHHHHhhcc
Q 048507 349 KKLSIDDCLAVVAQHS 364 (1448)
Q Consensus 349 ~~l~~~~a~~l~~~~~ 364 (1448)
++++.++..+.+.+..
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999887765
No 210
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.41 E-value=0.00017 Score=75.68 Aligned_cols=119 Identities=18% Similarity=0.170 Sum_probs=61.7
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCC
Q 048507 195 TEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQT 274 (1448)
Q Consensus 195 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 274 (1448)
..++.+.+++..... ....+.+.|+|++|+|||+||+.+++.. ......++|+++. ++...+......
T Consensus 36 ~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~-- 103 (202)
T 2w58_A 36 KAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANEL--AKRNVSSLIVYVP------ELFRELKHSLQD-- 103 (202)
T ss_dssp HHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHHH--HTTTCCEEEEEHH------HHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEhH------HHHHHHHHHhcc--
Confidence 344555666654321 1122678899999999999999999743 2333456666543 344444433221
Q ss_pred CCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhh--hcc-cccCC-CCCcEEEEEcCc
Q 048507 275 IDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVR--LSR-PFEAG-APGSKIIVTTRN 333 (1448)
Q Consensus 275 ~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~ilvTtR~ 333 (1448)
.........+. . .-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 104 ---~~~~~~~~~~~----~-~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 ---QTMNEKLDYIK----K-VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ---CCCHHHHHHHH----H-SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ---chHHHHHHHhc----C-CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 11222223222 1 2399999996643333322 221 11111 235578888874
No 211
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.39 E-value=0.00052 Score=81.63 Aligned_cols=185 Identities=11% Similarity=0.068 Sum_probs=101.2
Q ss_pred CeEeccchhHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLS-------NDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVK 260 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1448)
..++|.+..++++.+++...... +....+-|.|+|++|+|||++|+++++. .... .+.+++.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~---fv~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSE---EEEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCC---EEEEEch------
Confidence 45899999999998877531000 0123456889999999999999999873 2222 2334421
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCC--------Ch---hhHhhhcccccC--CCCCcEE
Q 048507 261 GLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNE--------NY---NDWVRLSRPFEA--GAPGSKI 327 (1448)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--------~~---~~~~~l~~~l~~--~~~gs~i 327 (1448)
++...+. ......+...+.....+++.+|+||+++.. .. .....+...+.. ...+.+|
T Consensus 273 ----~l~~~~~-----g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 273 ----EIMSKLA-----GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp ----HHHTSCT-----THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred ----Hhhhhhc-----chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 1111111 111222333444444567889999998311 00 011222222221 2234566
Q ss_pred EEEcCchh-hhhcc----CCcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCc-hHHHHHH
Q 048507 328 IVTTRNQE-VADIM----GTASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGL-PLAAQTL 392 (1448)
Q Consensus 328 lvTtR~~~-v~~~~----~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~ 392 (1448)
|.||.... +...+ .....+.+...+.++-.+++..++............++++.+.|. +-.+..+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHH
Confidence 66665442 22222 223468899999999999998776433211112235577777774 5445444
No 212
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.39 E-value=8.8e-05 Score=72.48 Aligned_cols=110 Identities=12% Similarity=0.027 Sum_probs=62.0
Q ss_pred eEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHH
Q 048507 189 QVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILR 268 (1448)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 268 (1448)
.++|++..++++.+.+..... ...-|.|+|.+|+|||++|+.+++... ..+.+++.. ... ..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~---~~~---~~-- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVE---YLI---DM-- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTT---HHH---HC--
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhh---CCh---Hh--
Confidence 578999999988888754211 123477999999999999999987322 222333322 110 00
Q ss_pred hccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccCC-CCCcEEEEEcCc
Q 048507 269 SVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEAG-APGSKIIVTTRN 333 (1448)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~ 333 (1448)
...+.+. .+.-.+++|+++.........+...+... ..+.++|.||..
T Consensus 67 ---------------~~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 ---------------PMELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ---------------HHHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ---------------hhhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 0111111 12347899999776554444444443322 345678887753
No 213
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.36 E-value=8e-05 Score=76.55 Aligned_cols=84 Identities=18% Similarity=0.174 Sum_probs=53.3
Q ss_pred ccCceeEEEeCCC-Cccc-----cCccccCCccceEEeccCccccc-----cChhhhccccccEEeccCCchhh----cc
Q 048507 593 KLQRLRVFSLRGY-RIDE-----LPDSIGDLRYFRYLNLSGTEIRT-----LPESVNKLYNLHSLLLEDCDRLK----KL 657 (1448)
Q Consensus 593 ~l~~L~~L~L~~n-~i~~-----lp~~i~~l~~L~~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L~~n~~~~----~l 657 (1448)
..+.|+.|+|++| .|.. +...+...++|++|+|++|.|.. +...+...++|++|+|++|.... .+
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 5667777777777 6642 44555666777777777777652 34455566677777777764321 24
Q ss_pred cccccccCCCCeeee--cCCC
Q 048507 658 CADMGNLAKLHHLKN--SNTK 676 (1448)
Q Consensus 658 p~~i~~L~~L~~L~l--~~~~ 676 (1448)
...+...++|++|++ ++|.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSC
T ss_pred HHHHHhCCCceEEEecCCCCC
Confidence 455666677777777 6666
No 214
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.00095 Score=75.65 Aligned_cols=179 Identities=15% Similarity=0.144 Sum_probs=95.6
Q ss_pred CeEeccchhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDL-------SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVK 260 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1448)
.++.|-++.+++|.+.+.-.-. -+-...+-|.++|++|+|||.+|++++.. ....| +.+..+.-.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~--- 219 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELV--- 219 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGS---
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhh---
Confidence 5678888888887766542000 01223567889999999999999999983 33333 334332211
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCCh--------h--h----HhhhcccccC--CCCC
Q 048507 261 GLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENY--------N--D----WVRLSRPFEA--GAPG 324 (1448)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--------~--~----~~~l~~~l~~--~~~g 324 (1448)
. ..-......+.+.+...-...+++|++|+++.... . . ...+...+.. ...+
T Consensus 220 -----------s-k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 287 (405)
T 4b4t_J 220 -----------Q-KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN 287 (405)
T ss_dssp -----------C-SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCC
T ss_pred -----------c-cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCC
Confidence 0 01111122222233333346789999999954210 0 0 1112222222 2234
Q ss_pred cEEEEEcCchhhhh-cc----CCcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCch
Q 048507 325 SKIIVTTRNQEVAD-IM----GTASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGLP 386 (1448)
Q Consensus 325 s~ilvTtR~~~v~~-~~----~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~P 386 (1448)
..||.||...+..+ .+ .-...+.++.-+.++-.++|..+.....-...-...+|++.+.|.-
T Consensus 288 V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~S 354 (405)
T 4b4t_J 288 IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCS 354 (405)
T ss_dssp EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCC
T ss_pred eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCC
Confidence 45566665443321 11 2345788988888888888876653322110112456777777743
No 215
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.24 E-value=0.00049 Score=89.13 Aligned_cols=153 Identities=15% Similarity=0.191 Sum_probs=79.3
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccc---ccc--cceEEEEEeCCccCHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRV---QDH--FDLKAWTCVSDDFDVKGL 262 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~--f~~~~wv~~~~~~~~~~~ 262 (1448)
++++||+.+++++.+.+.... .+.+.++|++|+|||++|+.+++.... ... -..+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 468999999999999996532 234689999999999999999873211 000 11234443322100
Q ss_pred HHHHHHhccCCCCCCCCHH-HHHHHHHHHhC-CccEEEEEecCCCCChh-----hHh---hhcccccCCCCCcEEEEEcC
Q 048507 263 TKTILRSVTKQTIDDSDLN-LLQEELKKKLS-QKKFLLVLDDVWNENYN-----DWV---RLSRPFEAGAPGSKIIVTTR 332 (1448)
Q Consensus 263 ~~~i~~~l~~~~~~~~~~~-~~~~~l~~~l~-~~~~LlVlDdv~~~~~~-----~~~---~l~~~l~~~~~gs~ilvTtR 332 (1448)
+... ..+.. .+...+...-. +++.+|++|+++..... .+. .+...+ .. .+..+|.+|.
T Consensus 240 ---------g~~~-~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l-~~-~~i~~I~at~ 307 (854)
T 1qvr_A 240 ---------GAKY-RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL-AR-GELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH-HT-TCCCEEEEEC
T ss_pred ---------cCcc-chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH-hC-CCeEEEEecC
Confidence 0000 11222 22223333323 46889999999643200 011 122222 11 2344555554
Q ss_pred chhh-----hhcc-CCcceEeCCCCCHHHHHHHHhh
Q 048507 333 NQEV-----ADIM-GTASAYQLKKLSIDDCLAVVAQ 362 (1448)
Q Consensus 333 ~~~v-----~~~~-~~~~~~~l~~l~~~~a~~l~~~ 362 (1448)
.... ...+ .-...+.+++.+.++..+++..
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~ 343 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRG 343 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHh
Confidence 3322 1111 1124588999999999988864
No 216
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.21 E-value=0.0015 Score=73.72 Aligned_cols=51 Identities=24% Similarity=0.313 Sum_probs=37.0
Q ss_pred CeEeccchhHHHHHHHHhcC--CCC------CCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 188 AQVYGRETEKKDVVELLLRD--DLS------NDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~--~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
..++|++..++.+...+... ... .......+.++|++|+|||++|+.+++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999998887541 000 0012356789999999999999999873
No 217
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.19 E-value=0.002 Score=82.55 Aligned_cols=155 Identities=18% Similarity=0.247 Sum_probs=86.1
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccc---c-cccceEEEE-EeCCccCHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRV---Q-DHFDLKAWT-CVSDDFDVKGL 262 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~-~~f~~~~wv-~~~~~~~~~~~ 262 (1448)
..++||+.+++++.+.|... ...-+.|+|.+|+|||++|+.++..... . ......+|. +.+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------
Confidence 46899999999999999643 2345689999999999999999863210 0 011223332 11110
Q ss_pred HHHHHHhccCCCCCCCCHHH-HHHHHHHHhCCccEEEEEecCCCC--------ChhhHhhhcccccCCCCCcEEEEEcCc
Q 048507 263 TKTILRSVTKQTIDDSDLNL-LQEELKKKLSQKKFLLVLDDVWNE--------NYNDWVRLSRPFEAGAPGSKIIVTTRN 333 (1448)
Q Consensus 263 ~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~~~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~ilvTtR~ 333 (1448)
+.... .....+. +...+......++.+|++|+++.. ...+...+...+... .+.++|.+|..
T Consensus 254 -------~~~~~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~-~~~~~I~at~~ 324 (758)
T 1r6b_X 254 -------LAGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTY 324 (758)
T ss_dssp --------CCCC-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEECH
T ss_pred -------hcccc-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC-CCeEEEEEeCc
Confidence 00111 1122332 223333333446789999999643 112222222233222 34566666665
Q ss_pred hhhhhcc-------CCcceEeCCCCCHHHHHHHHhhc
Q 048507 334 QEVADIM-------GTASAYQLKKLSIDDCLAVVAQH 363 (1448)
Q Consensus 334 ~~v~~~~-------~~~~~~~l~~l~~~~a~~l~~~~ 363 (1448)
.+..... .-...+.+...+.++..+++...
T Consensus 325 ~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l 361 (758)
T 1r6b_X 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_dssp HHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHH
T ss_pred hHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHH
Confidence 4322111 11136889999999988888653
No 218
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.19 E-value=0.00089 Score=75.73 Aligned_cols=123 Identities=13% Similarity=0.195 Sum_probs=65.1
Q ss_pred eEeccchhHHHHHHHHhcCC---CCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHH
Q 048507 189 QVYGRETEKKDVVELLLRDD---LSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKT 265 (1448)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 265 (1448)
.++|.+..++.+...+.... .........+.++|++|+|||++|+.++.. ....-...+.++++...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccc-cHHH
Confidence 36798888888888876531 001123468999999999999999999873 22222234556654432221 1112
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccc
Q 048507 266 ILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPF 318 (1448)
Q Consensus 266 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l 318 (1448)
+..... ..........+...+. ....-++++|+++.........+...+
T Consensus 95 l~g~~~-~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~l 143 (311)
T 4fcw_A 95 LIGAPP-GYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQML 143 (311)
T ss_dssp HHCCCT-TSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHH
T ss_pred hcCCCC-ccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHH
Confidence 211100 0001111122222222 233469999999766544444444433
No 219
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.14 E-value=0.0031 Score=68.83 Aligned_cols=184 Identities=13% Similarity=0.096 Sum_probs=91.6
Q ss_pred CeEeccchhHHHHHHHHhc---CCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHH
Q 048507 188 AQVYGRETEKKDVVELLLR---DDL---SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKG 261 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~---~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1448)
.+++|.+..++++.+.+.. ... .+....+-+.|+|++|+||||+|+.+++. .... .+.++.+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVP---FFTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCC---EEEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCC---EEEEeHHHHHH---
Confidence 4678988877776655421 100 00112345889999999999999999873 2222 23333322100
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCC----------h----hhHhhhcccccC--CCCCc
Q 048507 262 LTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNEN----------Y----NDWVRLSRPFEA--GAPGS 325 (1448)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~----~~~~~l~~~l~~--~~~gs 325 (1448)
. ........+...+.......+.++++|+++... . .....+...+.. ...+.
T Consensus 84 -------~-----~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (257)
T 1lv7_A 84 -------M-----FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 151 (257)
T ss_dssp -------S-----CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE
T ss_pred -------H-----hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCE
Confidence 0 011122333344444445567899999983210 0 011112111111 12345
Q ss_pred EEEEEcCchh-hhhcc----CCcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCC-chHHHHH
Q 048507 326 KIIVTTRNQE-VADIM----GTASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDG-LPLAAQT 391 (1448)
Q Consensus 326 ~ilvTtR~~~-v~~~~----~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g-~PLal~~ 391 (1448)
.||.||...+ +.... .....+.+...+.++-.+++..+.....-..+.....+++.+.| .+--|..
T Consensus 152 ~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 152 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLAN 223 (257)
T ss_dssp EEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred EEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHH
Confidence 6666776543 21111 12246778888888777777665422110001113446677777 5544443
No 220
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.13 E-value=0.0012 Score=78.66 Aligned_cols=97 Identities=11% Similarity=0.073 Sum_probs=58.1
Q ss_pred EEEEEecCCCCChhhHhhhcccccCCCCCcEEEEE---------cC----chhhhh-ccCCcceEeCCCCCHHHHHHHHh
Q 048507 296 FLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVT---------TR----NQEVAD-IMGTASAYQLKKLSIDDCLAVVA 361 (1448)
Q Consensus 296 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvT---------tR----~~~v~~-~~~~~~~~~l~~l~~~~a~~l~~ 361 (1448)
-++++|+++.........+...+.......-|+.| |. ...+.. ...-...+.+.+++.++..+++.
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCCEEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 38999999776666677776666654444322244 32 111111 11122457999999999999998
Q ss_pred hcccC-CchhhHHHHHHHHHhc-CCchHHHHHH
Q 048507 362 QHSLG-SDKLLEEIGKKIVAKC-DGLPLAAQTL 392 (1448)
Q Consensus 362 ~~~~~-~~~~~~~~~~~i~~~~-~g~PLal~~~ 392 (1448)
..+.. .....++....|++.+ +|.|-.+..+
T Consensus 377 ~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 377 IRAQTEGINISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHH
Confidence 76421 1123355667788888 7877644433
No 221
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.12 E-value=0.00021 Score=73.33 Aligned_cols=115 Identities=14% Similarity=0.080 Sum_probs=79.6
Q ss_pred hhccccccEeeccccccCCCCCCchhhhhhhcccCceeEEEeCCCCccc-----cCccccCCccceEEeccCccccc---
Q 048507 561 LYDIQHLRTFLPVMLSNSLHGYLAPSILTELFKLQRLRVFSLRGYRIDE-----LPDSIGDLRYFRYLNLSGTEIRT--- 632 (1448)
Q Consensus 561 ~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~-----lp~~i~~l~~L~~L~Ls~n~i~~--- 632 (1448)
+...+.|+.|...... .....-...+...+...+.|++|+|++|.|.. +...+...+.|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~-~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIM-NIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCT-TCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HhcCCCCCEEEecCCC-CCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3456677777432110 11100112234444577899999999999863 45566667899999999999984
Q ss_pred --cChhhhccccccEEec--cCCchhh----cccccccccCCCCeeeecCCC
Q 048507 633 --LPESVNKLYNLHSLLL--EDCDRLK----KLCADMGNLAKLHHLKNSNTK 676 (1448)
Q Consensus 633 --lp~~i~~L~~L~~L~L--~~n~~~~----~lp~~i~~L~~L~~L~l~~~~ 676 (1448)
+...+...++|++|+| ++|.... .+...+...++|++|++++|.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 5677888899999999 7764322 244556677999999999998
No 222
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.12 E-value=0.00024 Score=69.57 Aligned_cols=39 Identities=21% Similarity=0.103 Sum_probs=27.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCC
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSD 255 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 255 (1448)
...++|+|+.|+|||||++.++......+ + .++++....
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g-~-~~~~~~~~~ 74 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAG-K-NAAYIDAAS 74 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTT-C-CEEEEETTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcC-C-cEEEEcHHH
Confidence 36899999999999999999987432211 1 256665543
No 223
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.0019 Score=74.56 Aligned_cols=180 Identities=16% Similarity=0.135 Sum_probs=95.5
Q ss_pred cCeEeccchhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCH
Q 048507 187 EAQVYGRETEKKDVVELLLRDDL-------SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDV 259 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 259 (1448)
=.++.|-++.+++|.+.+.-.-. -+-...+-|.++|++|+|||.+|+++++. ....| +.++.+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~s- 253 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIVD- 253 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTCC-
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhcc-
Confidence 35678988888887776642100 01234578899999999999999999983 33222 3343332110
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCC----------hh----hHhhhcccccC--CCC
Q 048507 260 KGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNEN----------YN----DWVRLSRPFEA--GAP 323 (1448)
Q Consensus 260 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~----~~~~l~~~l~~--~~~ 323 (1448)
.........+...+...-...+.+|++|+++..- .. ....+...+.. ...
T Consensus 254 --------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 254 --------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp --------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred --------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 0111111222223333334678999999995321 00 01122222222 223
Q ss_pred CcEEEEEcCchhhhhc-c-C---CcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCch
Q 048507 324 GSKIIVTTRNQEVADI-M-G---TASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGLP 386 (1448)
Q Consensus 324 gs~ilvTtR~~~v~~~-~-~---~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~P 386 (1448)
+..||.||-..+.... + . -...+.++.-+.++-.++|..+........+-....|++.+.|+-
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~s 387 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFN 387 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCC
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCC
Confidence 4567777755443221 1 1 234678888888888888876643222100111356777777743
No 224
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.06 E-value=0.0014 Score=83.79 Aligned_cols=147 Identities=18% Similarity=0.175 Sum_probs=79.9
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcc---cccc-cce-EEEEEeCCccCHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKR---VQDH-FDL-KAWTCVSDDFDVKGL 262 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~-f~~-~~wv~~~~~~~~~~~ 262 (1448)
++++||+.+++++.+.+.... ..-+.++|++|+|||++|+.+++... +... ... .+.++.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------
Confidence 468999999999999996532 23467999999999999999987320 0000 011 112222
Q ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchhhhhc--c
Q 048507 263 TKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQEVADI--M 340 (1448)
Q Consensus 263 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~--~ 340 (1448)
+.. ....-...+...+......++.+|++|.. .+....+...+.. ...++|.||........ .
T Consensus 245 --------g~~-~~G~~e~~l~~~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 245 --------GTK-YRGEFEDRLKKVMDEIRQAGNIILFIDAA----IDASNILKPSLAR--GELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp -----------------CTTHHHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTT
T ss_pred --------ccc-ccchHHHHHHHHHHHHHhcCCEEEEEcCc----hhHHHHHHHHHhc--CCEEEEeCCChHHHHHHhhc
Confidence 000 00000111223333333467889999922 1222223333332 34567776665442110 0
Q ss_pred -----CCcceEeCCCCCHHHHHHHHhhcc
Q 048507 341 -----GTASAYQLKKLSIDDCLAVVAQHS 364 (1448)
Q Consensus 341 -----~~~~~~~l~~l~~~~a~~l~~~~~ 364 (1448)
.-...+.++..+.++..+++....
T Consensus 310 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 112468999999999999998543
No 225
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.03 E-value=0.00071 Score=74.37 Aligned_cols=62 Identities=16% Similarity=0.031 Sum_probs=39.4
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCC
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSD 255 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 255 (1448)
..++|++..+.++.+.+..... ....|.|+|.+|+|||++|+.+++... ..-...+.++++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~~~--~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAA 67 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHTST--TTTSCEEEEEGGG
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhcC--ccCCCeEEEecCC
Confidence 3578999999988877754211 124577999999999999999997421 1112244566554
No 226
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.01 E-value=0.00017 Score=79.59 Aligned_cols=179 Identities=16% Similarity=0.139 Sum_probs=87.5
Q ss_pred CeEeccchhHHHHHHHHhcCCCC------CCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLS------NDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKG 261 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1448)
.+++|.+..++++.+.+..-... +....+-+.|+|++|+|||++|+.+++. ....|- .+.++.-
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~~---~v~~~~~----- 80 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPFF---SMGGSSF----- 80 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCCC---CCCSCTT-----
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCEE---EechHHH-----
Confidence 45889998888887766410000 0011233779999999999999999873 222221 1111111
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChh---------------hHhhhcccccC---CCC
Q 048507 262 LTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYN---------------DWVRLSRPFEA---GAP 323 (1448)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~---------------~~~~l~~~l~~---~~~ 323 (1448)
....... ....... .+......++.+|++|+++..... ....+...+.. ...
T Consensus 81 -----~~~~~~~--~~~~~~~---~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (268)
T 2r62_A 81 -----IEMFVGL--GASRVRD---LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENA 150 (268)
T ss_dssp -----TTSCSSS--CSSSSST---THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCS
T ss_pred -----HHhhcch--HHHHHHH---HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCC
Confidence 0001110 0111111 122222345789999999432110 12223322222 112
Q ss_pred CcEEEEEcCchhhhh-cc----CCcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCch
Q 048507 324 GSKIIVTTRNQEVAD-IM----GTASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGLP 386 (1448)
Q Consensus 324 gs~ilvTtR~~~v~~-~~----~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~P 386 (1448)
...||.||....... .. .....+.++..+.++-.+++.................|++.+.|.|
T Consensus 151 ~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~ 218 (268)
T 2r62_A 151 PVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLA 218 (268)
T ss_dssp CCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSC
T ss_pred CEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCC
Confidence 345666776543211 11 1224678888888888888876543221000111233566666654
No 227
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.0011 Score=76.27 Aligned_cols=178 Identities=14% Similarity=0.119 Sum_probs=94.3
Q ss_pred CeEeccchhHHHHHHHHhc---C-CC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHH
Q 048507 188 AQVYGRETEKKDVVELLLR---D-DL---SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVK 260 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~---~-~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1448)
.++.|-++.+++|.+.+.- . +. -+-...+-|.++|++|+|||.+|+++++. ....| +.+..+.-
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~L---- 279 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSEL---- 279 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGG----
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHHh----
Confidence 4678888888888775421 0 00 01234677889999999999999999983 33332 33333221
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCCh------h--------hHhhhcccccC--CCCC
Q 048507 261 GLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENY------N--------DWVRLSRPFEA--GAPG 324 (1448)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~------~--------~~~~l~~~l~~--~~~g 324 (1448)
... .-......+...+...-...+++|++|+++.... . ....+...+.. ...+
T Consensus 280 ----------~sk-~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 348 (467)
T 4b4t_H 280 ----------VQK-YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN 348 (467)
T ss_dssp ----------CCC-SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT
T ss_pred ----------hcc-cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc
Confidence 100 1111112222333333346789999999953210 0 01111222221 2234
Q ss_pred cEEEEEcCchhhhh-cc----CCcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCc
Q 048507 325 SKIIVTTRNQEVAD-IM----GTASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGL 385 (1448)
Q Consensus 325 s~ilvTtR~~~v~~-~~----~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~ 385 (1448)
..||.||-..+... .+ .-...+++..-+.++-.++|+.+.....-...-....|++.+.|.
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~Gf 414 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNS 414 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSC
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCC
Confidence 44566665433221 11 234578888888888888887765332211011135577777775
No 228
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.96 E-value=0.00079 Score=75.16 Aligned_cols=46 Identities=15% Similarity=0.202 Sum_probs=36.1
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..++|+...+.++.+.+..... ....|.|+|.+|+|||++|+.+++
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHH
Confidence 3578999999998888765321 224567999999999999999987
No 229
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.90 E-value=0.0021 Score=75.68 Aligned_cols=179 Identities=13% Similarity=0.116 Sum_probs=94.2
Q ss_pred CeEeccchhHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDL------SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKG 261 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1448)
.+++|.++.++++.+.+..-.. -+....+-|.|+|++|+|||++|+.++.. ....| +.++++.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHH--
Confidence 4588988877776665432100 01112234789999999999999999973 22222 33443321110
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCCh--------------hhHhhhcccccC--CCCCc
Q 048507 262 LTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENY--------------NDWVRLSRPFEA--GAPGS 325 (1448)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~gs 325 (1448)
............+.......+.+|++|+++.... .....+...+.. ...+.
T Consensus 89 -------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 89 -------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp -------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred -------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 0001112233344444456789999999944210 012222222211 12355
Q ss_pred EEEEEcCchhhhh-c-cC---CcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCch
Q 048507 326 KIIVTTRNQEVAD-I-MG---TASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGLP 386 (1448)
Q Consensus 326 ~ilvTtR~~~v~~-~-~~---~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~P 386 (1448)
.||.||...+... . .. -...+.++..+.++-.+++..+.....-..+.....|++.+.|..
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCc
Confidence 6777776654322 1 11 223678888888877777766543322100111345788888876
No 230
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.0039 Score=71.93 Aligned_cols=52 Identities=25% Similarity=0.203 Sum_probs=37.9
Q ss_pred cCeEeccchhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 187 EAQVYGRETEKKDVVELLLRDDL-------SNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
-.++.|-++.+++|.+.+.-.-. -+-...+-|.++|++|+|||++|+++++.
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45688999888888776642100 01234567899999999999999999973
No 231
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.0011 Score=76.54 Aligned_cols=179 Identities=14% Similarity=0.133 Sum_probs=92.3
Q ss_pred cCeEeccchhHHHHHHHHhc----CCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCH
Q 048507 187 EAQVYGRETEKKDVVELLLR----DDL---SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDV 259 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 259 (1448)
=.++.|-++.+++|.+.+.- .+. -+-...+-|.++|++|+|||.+|++++.. ....| +.++.+.-
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l--- 251 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQL--- 251 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGG---
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhhh---
Confidence 35678999888888776431 100 01234578899999999999999999983 33222 33333221
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCC------Ch----hh----HhhhcccccC--CCC
Q 048507 260 KGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNE------NY----ND----WVRLSRPFEA--GAP 323 (1448)
Q Consensus 260 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------~~----~~----~~~l~~~l~~--~~~ 323 (1448)
... ........+...+...-...+++|++|+++.. .. .. ...+...+.. ...
T Consensus 252 -----------~~~-~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 252 -----------VQM-YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp -----------CSS-CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred -----------hhc-ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 100 01111111222222222356899999998321 00 00 1112222222 123
Q ss_pred CcEEEEEcCchhhhh-cc----CCcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCc
Q 048507 324 GSKIIVTTRNQEVAD-IM----GTASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGL 385 (1448)
Q Consensus 324 gs~ilvTtR~~~v~~-~~----~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~ 385 (1448)
+..||.||...+... .+ .-...+.++.-+.++-.++|..+.........-...+|++.+.|+
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~ 386 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEF 386 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSC
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCC
Confidence 445565775544322 11 123468888888888888887654221100000135567777764
No 232
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.82 E-value=0.0036 Score=78.04 Aligned_cols=179 Identities=11% Similarity=0.092 Sum_probs=98.0
Q ss_pred CeEeccchhHHHHHHHHhc----CCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHH
Q 048507 188 AQVYGRETEKKDVVELLLR----DDL---SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVK 260 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1448)
.++.|-++.+++|.+++.- .+. -+-..++-|.++|++|+|||+||+++++.. ..+ .+.++.+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el--g~~---~~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GAF---FFLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT--TCE---EEEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCe---EEEEEhHH-----
Confidence 4578888888888776531 110 012345778999999999999999999843 222 23343221
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCCh------hh-----HhhhcccccCC--CCCcEE
Q 048507 261 GLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENY------ND-----WVRLSRPFEAG--APGSKI 327 (1448)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~------~~-----~~~l~~~l~~~--~~gs~i 327 (1448)
+... ........+...+....+..+.+|++|+++..-. .+ ..++...+... ..+..|
T Consensus 274 -----l~sk-----~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 274 -----IMSK-----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp -----HHSS-----CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred -----hhcc-----cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 1111 1111223333444445567799999999843210 00 11122222111 123445
Q ss_pred EEEcCchh-hhhcc----CCcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCch
Q 048507 328 IVTTRNQE-VADIM----GTASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGLP 386 (1448)
Q Consensus 328 lvTtR~~~-v~~~~----~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~P 386 (1448)
|.||...+ +-..+ .-...+++..-+.++-.++|..+........+....+|++.+.|.-
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHV 407 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCC
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCC
Confidence 55665433 22222 1234688888898888888887654332111122456777877753
No 233
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.66 E-value=0.001 Score=85.12 Aligned_cols=155 Identities=14% Similarity=0.171 Sum_probs=85.8
Q ss_pred CeEeccchhHHHHHHHHhcCCCC---CCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLS---NDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTK 264 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 264 (1448)
..++|.+..++.+...+...... .......+.++|++|+|||++|+.+++. ....-...+.++++.-.+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~----- 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEK----- 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSS-----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhcccc-----
Confidence 56899999999888888643210 1122347899999999999999999873 2222223455555432110
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccC-----------CCCCcEEEEEcCc
Q 048507 265 TILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEA-----------GAPGSKIIVTTRN 333 (1448)
Q Consensus 265 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~-----------~~~gs~ilvTtR~ 333 (1448)
.... ...+...+++ ...-+|+||++..........+...+.. ...+.+||+||..
T Consensus 564 ---------~~~~--~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 564 ---------HSTS--GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ---------CCCC-----CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ---------cccc--cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 0000 1111122221 2344899999976655544444443332 1235688888873
Q ss_pred hh---------hhhcc------CCcceEeCCCCCHHHHHHHHhhc
Q 048507 334 QE---------VADIM------GTASAYQLKKLSIDDCLAVVAQH 363 (1448)
Q Consensus 334 ~~---------v~~~~------~~~~~~~l~~l~~~~a~~l~~~~ 363 (1448)
.. +...+ .-...+.+.+++.++-.+++...
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 10 01111 11247788888888877776543
No 234
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.0013 Score=74.57 Aligned_cols=178 Identities=15% Similarity=0.139 Sum_probs=92.1
Q ss_pred CeEeccchhHHHHHHHHhc---CCC----CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHH
Q 048507 188 AQVYGRETEKKDVVELLLR---DDL----SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVK 260 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~---~~~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1448)
.++.|-++.+++|.+.+.- ... -+-...+-|.++|++|+|||.+|++++.. ....| +.++.+.-
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~l---- 252 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSEL---- 252 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGGG----
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHHh----
Confidence 4677888888888776532 100 01234577899999999999999999983 33332 22332211
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCCh----------hh----HhhhcccccC--CCCC
Q 048507 261 GLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENY----------ND----WVRLSRPFEA--GAPG 324 (1448)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------~~----~~~l~~~l~~--~~~g 324 (1448)
... .-......+...+...-...+.+|++|+++.... .. ...+...+.. ...+
T Consensus 253 ----------~sk-~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ 321 (437)
T 4b4t_I 253 ----------IQK-YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGD 321 (437)
T ss_dssp ----------CCS-SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSS
T ss_pred ----------hhc-cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCC
Confidence 100 1111111222222233346689999999853200 00 1112222211 2234
Q ss_pred cEEEEEcCchhhhh-cc-C---CcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCc
Q 048507 325 SKIIVTTRNQEVAD-IM-G---TASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGL 385 (1448)
Q Consensus 325 s~ilvTtR~~~v~~-~~-~---~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~ 385 (1448)
..||.||-..+..+ .+ . -...+.+..-+.++-.++|..+.....-..+-....|++.+.|+
T Consensus 322 ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~Gf 387 (437)
T 4b4t_I 322 VKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDL 387 (437)
T ss_dssp EEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSC
T ss_pred EEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCC
Confidence 45566665444322 12 1 12457788888888888887665332200011135567777664
No 235
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.29 E-value=0.019 Score=63.59 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
.++.+.++|++|+|||++|+++++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999973
No 236
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.27 E-value=0.0046 Score=70.39 Aligned_cols=150 Identities=14% Similarity=0.092 Sum_probs=82.0
Q ss_pred eEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHH
Q 048507 189 QVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILR 268 (1448)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 268 (1448)
.++|++..++.+...+..+ .-+.++|++|+|||++|+.+++. ....| ..+.+.......++. .
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~--~~~~~---~~i~~~~~~~~~~l~----g 90 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT--MDLDF---HRIQFTPDLLPSDLI----G 90 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH--TTCCE---EEEECCTTCCHHHHH----E
T ss_pred ceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEecCCCCChhhcC----C
Confidence 4789999999998888654 25789999999999999999873 22222 234444333333221 1
Q ss_pred hccCCCCCCCCHHHHHHHHHHHhC-C--ccEEEEEecCCCCChhhHhhhcccccC-----------CCCCcEEEEEcCch
Q 048507 269 SVTKQTIDDSDLNLLQEELKKKLS-Q--KKFLLVLDDVWNENYNDWVRLSRPFEA-----------GAPGSKIIVTTRNQ 334 (1448)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~l~~~l~-~--~~~LlVlDdv~~~~~~~~~~l~~~l~~-----------~~~gs~ilvTtR~~ 334 (1448)
....... .... ... + ...++++|+++.........+...+.. ......|+.|+...
T Consensus 91 ~~~~~~~-~~~~---------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 91 TMIYNQH-KGNF---------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp EEEEETT-TTEE---------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred ceeecCC-CCce---------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 1100000 0000 000 1 125899999976554433333322211 12345556566532
Q ss_pred h------hhhcc--CCcceEeCCCCCHHHHHHHHhhccc
Q 048507 335 E------VADIM--GTASAYQLKKLSIDDCLAVVAQHSL 365 (1448)
Q Consensus 335 ~------v~~~~--~~~~~~~l~~l~~~~a~~l~~~~~~ 365 (1448)
+ +...+ .-...+.++..+.++-.+++.....
T Consensus 161 ~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 161 EQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp CCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred cccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 2 11111 1112478899999998888877643
No 237
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.27 E-value=0.005 Score=74.72 Aligned_cols=164 Identities=16% Similarity=0.175 Sum_probs=76.4
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
.+++|-+...+.+.+.+.-...........+.++|++|+||||+|+.++.. ....| ..+.+....+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS--LGRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH--HTCEE---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh--cCCCe---EEEEecccchhhhhhhHHH
Confidence 457888777777655443211001124568999999999999999999873 22222 2233333222111111111
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCChh----hHhhhcccccCCC---------------CCcEEE
Q 048507 268 RSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYN----DWVRLSRPFEAGA---------------PGSKII 328 (1448)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~l~~~~---------------~gs~il 328 (1448)
..++ .....+...+... ....-++++|+++..... ....+...+.... ....||
T Consensus 156 ~~ig------~~~~~~~~~~~~a-~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 156 TYVG------AMPGRIIQGMKKA-GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHHTT-CSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHhc------cCchHHHHHHHHh-hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 1111 0111111222222 223338889999654322 1122333222110 345666
Q ss_pred EEcCchhhhh-cc-CCcceEeCCCCCHHHHHHHHhhc
Q 048507 329 VTTRNQEVAD-IM-GTASAYQLKKLSIDDCLAVVAQH 363 (1448)
Q Consensus 329 vTtR~~~v~~-~~-~~~~~~~l~~l~~~~a~~l~~~~ 363 (1448)
.||....... .+ .-...+.+.+++.++-.+++..+
T Consensus 229 ~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~ 265 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDH 265 (543)
T ss_dssp EECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHT
T ss_pred eccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHH
Confidence 6666432111 10 11146788899888888777664
No 238
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.26 E-value=0.0032 Score=70.29 Aligned_cols=57 Identities=11% Similarity=0.059 Sum_probs=35.0
Q ss_pred cchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEe
Q 048507 193 RETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCV 253 (1448)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 253 (1448)
+...++.+.+++.... ......+.|+|++|+|||+||.++++.... ..-..++++.+
T Consensus 133 ~~~~~~~~~~~i~~~~---~~~~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~ 189 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYP---SAEQKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHCS---CSSCCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEH
T ss_pred HHHHHHHHHHHHHhcc---ccCCceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEH
Confidence 3344555556665432 112367889999999999999999974220 22223555554
No 239
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.18 E-value=0.0025 Score=69.45 Aligned_cols=69 Identities=19% Similarity=0.379 Sum_probs=45.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEe--CCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCV--SDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLS 292 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 292 (1448)
.+++.|+|++|+|||+||.+++.. .-..++|++. ....+ . ...+.+...+.+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~-------------~---~~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLS-------------G---YNTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSST-------------T---CBCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhh-------------h---hhcCHHHHHHHHHHHHh
Confidence 467889999999999999999873 1123556666 22200 0 01455666666666665
Q ss_pred CccEEEEEecCCC
Q 048507 293 QKKFLLVLDDVWN 305 (1448)
Q Consensus 293 ~~~~LlVlDdv~~ 305 (1448)
..+ +||+|++..
T Consensus 182 ~~~-LLVIDsI~a 193 (331)
T 2vhj_A 182 QHR-VIVIDSLKN 193 (331)
T ss_dssp HCS-EEEEECCTT
T ss_pred hCC-EEEEecccc
Confidence 556 999999943
No 240
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.08 E-value=0.01 Score=75.55 Aligned_cols=158 Identities=13% Similarity=0.126 Sum_probs=83.6
Q ss_pred cCeEeccchhHHHHHHHHhcC----C---CCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCH
Q 048507 187 EAQVYGRETEKKDVVELLLRD----D---LSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDV 259 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~----~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 259 (1448)
-.+++|.+..++++.+++... + .-.-.....|.|+|++|+||||||+.++.. ....| +.++...
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~---- 273 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE---- 273 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHH----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchH----
Confidence 356899999999988887530 0 001123457899999999999999999873 22222 3333211
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCCCh------hh-----HhhhcccccC--CCCCcE
Q 048507 260 KGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNENY------ND-----WVRLSRPFEA--GAPGSK 326 (1448)
Q Consensus 260 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~------~~-----~~~l~~~l~~--~~~gs~ 326 (1448)
+. .. ........+...+.......+.++++|++..... .. ...+...+.. ...+..
T Consensus 274 ------l~----~~-~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~ 342 (806)
T 1ypw_A 274 ------IM----SK-LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ------HS----SS-STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCE
T ss_pred ------hh----hh-hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEE
Confidence 11 00 0011112222333333345678999999842210 00 1112111111 123445
Q ss_pred EEEEcCchhhh-hccC----CcceEeCCCCCHHHHHHHHhhcc
Q 048507 327 IIVTTRNQEVA-DIMG----TASAYQLKKLSIDDCLAVVAQHS 364 (1448)
Q Consensus 327 ilvTtR~~~v~-~~~~----~~~~~~l~~l~~~~a~~l~~~~~ 364 (1448)
+|.||...... ..+. ....+.+...+.++-.+++..++
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 66666554222 1111 12356778888888888887654
No 241
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.01 E-value=0.022 Score=60.18 Aligned_cols=86 Identities=21% Similarity=0.104 Sum_probs=51.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccC-----------CC-CCCCCHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTK-----------QT-IDDSDLN 281 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-----------~~-~~~~~~~ 281 (1448)
...++.|+|.+|+||||+|..++. ..-..++|++.....+...+.. +.+..+. .. ....+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 346899999999999999999986 1224678888776555554433 3333221 11 1111222
Q ss_pred HHHHHHHHHhCCccEEEEEecCCC
Q 048507 282 LLQEELKKKLSQKKFLLVLDDVWN 305 (1448)
Q Consensus 282 ~~~~~l~~~l~~~~~LlVlDdv~~ 305 (1448)
.....++.....++-+||+|.+..
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHH
Confidence 334444444444577899998843
No 242
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.00 E-value=0.041 Score=65.13 Aligned_cols=176 Identities=13% Similarity=0.118 Sum_probs=90.8
Q ss_pred cCeEeccchhHHHHHHHHhc---CCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHH
Q 048507 187 EAQVYGRETEKKDVVELLLR---DDL---SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVK 260 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~---~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1448)
-.+++|.+..++++.+.... ... -+-.-.+-+.|+|++|+|||+||+.++... .. ..+.++.+.-..
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~--~~---~~i~i~g~~~~~-- 102 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--RV---PFITASGSDFVE-- 102 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT--TC---CEEEEEGGGGTS--
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CC---CEEEEehhHHHH--
Confidence 34688988777666655431 100 000112338999999999999999999732 22 234444332100
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC----CccEEEEEecCCCCC----------hhh----HhhhcccccCC-
Q 048507 261 GLTKTILRSVTKQTIDDSDLNLLQEELKKKLS----QKKFLLVLDDVWNEN----------YND----WVRLSRPFEAG- 321 (1448)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~LlVlDdv~~~~----------~~~----~~~l~~~l~~~- 321 (1448)
.........++..++ ..+.++++|+++... ... ...+...+..+
T Consensus 103 -----------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 103 -----------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp -----------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred -----------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 000111222333332 235799999994321 011 12232223322
Q ss_pred -CCCcEEEEEcCchhhhhc-c----CCcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCch
Q 048507 322 -APGSKIIVTTRNQEVADI-M----GTASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGLP 386 (1448)
Q Consensus 322 -~~gs~ilvTtR~~~v~~~-~----~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~P 386 (1448)
..+..++.||...++... + .....+.++..+.++-.+++..++....-..+.....|++.+.|+.
T Consensus 166 ~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV 236 (499)
T ss_dssp SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCC
T ss_pred cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCC
Confidence 233455556666554321 1 1234688888888888888877653221111112345777777765
No 243
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.95 E-value=0.007 Score=57.35 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=43.5
Q ss_pred eEEEeCCCCcc--ccCccccCCccceEEeccCccccccC-hhhhccccccEEeccCCc
Q 048507 598 RVFSLRGYRID--ELPDSIGDLRYFRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCD 652 (1448)
Q Consensus 598 ~~L~L~~n~i~--~lp~~i~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~ 652 (1448)
.+++.+++.++ .+|..+. .+|++|+|++|+|+.+| ..|..+.+|++|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 37888999998 8887654 47899999999999998 457888888888888874
No 244
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.91 E-value=0.01 Score=76.73 Aligned_cols=136 Identities=15% Similarity=0.212 Sum_probs=71.7
Q ss_pred CeEeccchhHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDL---SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTK 264 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 264 (1448)
..++|.+..++.+...+..... ........+.|+|++|+|||++|+.+++.. ...-...+.++++.-....
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~--~~~~~~~i~i~~~~~~~~~---- 631 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL--FDTEEAMIRIDMTEYMEKH---- 631 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH--HSSGGGEEEECTTTCCSSG----
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCCcEEEEechhccchh----
Confidence 3579999999988888754311 012234678999999999999999998732 1111223445554332210
Q ss_pred HHHHhccCCCC---CCCCHHHHHHHHHHHhCCccEEEEEecCCCCChhhHhhhcccccCC-----------CCCcEEEEE
Q 048507 265 TILRSVTKQTI---DDSDLNLLQEELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEAG-----------APGSKIIVT 330 (1448)
Q Consensus 265 ~i~~~l~~~~~---~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvT 330 (1448)
....+.+... .......+...+++ ...-+|+||++..........+...+..+ -.++.||+|
T Consensus 632 -~~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~t 707 (854)
T 1qvr_A 632 -AVSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILT 707 (854)
T ss_dssp -GGGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEE
T ss_pred -HHHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEe
Confidence 0111111000 00001122223322 23458999999776655555555444322 124557777
Q ss_pred cCc
Q 048507 331 TRN 333 (1448)
Q Consensus 331 tR~ 333 (1448)
|..
T Consensus 708 sn~ 710 (854)
T 1qvr_A 708 SNL 710 (854)
T ss_dssp CCT
T ss_pred cCc
Confidence 764
No 245
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.84 E-value=0.0084 Score=76.84 Aligned_cols=50 Identities=16% Similarity=0.254 Sum_probs=37.5
Q ss_pred CeEeccchhHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 188 AQVYGRETEKKDVVELLLRDDL---SNDGGFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..++|.+..++.+..++..... ........+.++|++|+|||++|+.+++
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 4588999999888887753211 0122345789999999999999999987
No 246
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.70 E-value=0.032 Score=60.51 Aligned_cols=149 Identities=11% Similarity=0.136 Sum_probs=72.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEE
Q 048507 218 IPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFL 297 (1448)
Q Consensus 218 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 297 (1448)
+.|+|++|+||||||+.++... . ...+.+... ++..... ......+...++..-...+.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~--~---~~~i~~~~~----------~~~~~~~-----~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA--R---VPFITASGS----------DFVEMFV-----GVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEHH----------HHHHSCT-----THHHHHHHHHHHHHTTSSSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh--C---CCEEEeeHH----------HHHHHHh-----hHHHHHHHHHHHHHHhcCCeE
Confidence 8999999999999999999732 2 122333321 1111100 000111222223222345689
Q ss_pred EEEecCCCC----------Chhh----HhhhcccccCCC--CCcEEEEEcCchhhhhc-c----CCcceEeCCCCCHHHH
Q 048507 298 LVLDDVWNE----------NYND----WVRLSRPFEAGA--PGSKIIVTTRNQEVADI-M----GTASAYQLKKLSIDDC 356 (1448)
Q Consensus 298 lVlDdv~~~----------~~~~----~~~l~~~l~~~~--~gs~ilvTtR~~~v~~~-~----~~~~~~~l~~l~~~~a 356 (1448)
+++|+++.. .... ...+...+..+. ....++.||...++... . .....+.++..+.++-
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r 191 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 191 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHH
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHH
Confidence 999998311 0011 112222222222 22334446665544321 1 2234678888888887
Q ss_pred HHHHhhcccCCchhhHHHHHHHHHhcCCch
Q 048507 357 LAVVAQHSLGSDKLLEEIGKKIVAKCDGLP 386 (1448)
Q Consensus 357 ~~l~~~~~~~~~~~~~~~~~~i~~~~~g~P 386 (1448)
.+++..++.+..-..+.....+++.+.|.-
T Consensus 192 ~~il~~~~~~~~~~~~~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 192 EQILRIHARGKPLAEDVDLALLAKRTPGFV 221 (254)
T ss_dssp HHHHHHHHTTSCBCTTCCHHHHHHTCTTCC
T ss_pred HHHHHHHHcCCCCCcccCHHHHHHHcCCCC
Confidence 777766542221111111335666666643
No 247
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.54 E-value=0.027 Score=63.35 Aligned_cols=85 Identities=18% Similarity=0.130 Sum_probs=55.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCC-----CCCCCHHHHHHHHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQT-----IDDSDLNLLQEELK 288 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 288 (1448)
..+++.|+|++|+||||||.+++.... ..=..++|++.....+.. .+++++... ....+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 458999999999999999999886322 222347888887766654 344443321 12345666666666
Q ss_pred HHhC-CccEEEEEecCCC
Q 048507 289 KKLS-QKKFLLVLDDVWN 305 (1448)
Q Consensus 289 ~~l~-~~~~LlVlDdv~~ 305 (1448)
..++ .+.-++|+|.+..
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 5554 4556899999843
No 248
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.51 E-value=0.034 Score=64.39 Aligned_cols=22 Identities=45% Similarity=0.517 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..+.++|++|+|||++|+.+++
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999987
No 249
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.48 E-value=0.038 Score=60.80 Aligned_cols=179 Identities=12% Similarity=0.101 Sum_probs=84.6
Q ss_pred CeEeccchhHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHH
Q 048507 188 AQVYGRETEKKDVVELLLRDDL------SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKG 261 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1448)
.+++|.+..++++.+....-.. -+-.-.+-+.|+|++|+||||||+.++... . ...+.+... .
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~--~---~~~i~~~~~------~ 108 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--R---VPFITASGS------D 108 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEHH------H
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc--C---CCEEEecHH------H
Confidence 4578877666655544321100 000011238999999999999999998732 2 223333321 1
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCCCC----------ChhhH----hhhcccccCCC--CCc
Q 048507 262 LTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVWNE----------NYNDW----VRLSRPFEAGA--PGS 325 (1448)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------~~~~~----~~l~~~l~~~~--~gs 325 (1448)
+..... ......+...++..-...+.++|+|+++.. ....+ ..+...+..+. ...
T Consensus 109 ----~~~~~~-----~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~ 179 (278)
T 1iy2_A 109 ----FVEMFV-----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 179 (278)
T ss_dssp ----HHHSTT-----THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCE
T ss_pred ----HHHHHh-----hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCE
Confidence 111100 000111222233322345689999998311 00111 12222222222 223
Q ss_pred EEEEEcCchhhhhc-----cCCcceEeCCCCCHHHHHHHHhhcccCCchhhHHHHHHHHHhcCCch
Q 048507 326 KIIVTTRNQEVADI-----MGTASAYQLKKLSIDDCLAVVAQHSLGSDKLLEEIGKKIVAKCDGLP 386 (1448)
Q Consensus 326 ~ilvTtR~~~v~~~-----~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g~P 386 (1448)
.++.||...++... ......+.++..+.++-.+++..++....-..+.....+++.+.|..
T Consensus 180 i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 180 VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV 245 (278)
T ss_dssp EEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCC
T ss_pred EEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCC
Confidence 34445655443221 12335688888888887777766543221101111334666666644
No 250
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.45 E-value=0.065 Score=58.45 Aligned_cols=126 Identities=14% Similarity=0.105 Sum_probs=65.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHH-HHHHHHHHHhCCccE
Q 048507 218 IPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLN-LLQEELKKKLSQKKF 296 (1448)
Q Consensus 218 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~l~~~l~~~~~ 296 (1448)
+.++|++|+||||||+.++..... ..+++....-.+. ...... .+...+...-...+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~----------------~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNM----------------YVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS----------------TTHHHHHHHHHHHHHHHHTCSE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh----------------hhhHHHHHHHHHHHHHHhcCCC
Confidence 899999999999999999873221 2344443221110 000011 111112221234578
Q ss_pred EEEEecCCCCCh-----------hhHhhhcccccCC--CCCcEEEEEcCchhhhhcc-----CCcceEeCCCCCHHHHHH
Q 048507 297 LLVLDDVWNENY-----------NDWVRLSRPFEAG--APGSKIIVTTRNQEVADIM-----GTASAYQLKKLSIDDCLA 358 (1448)
Q Consensus 297 LlVlDdv~~~~~-----------~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~~-----~~~~~~~l~~l~~~~a~~ 358 (1448)
++++|+++.... .....+...+..+ ....-++.+|...++.... .-...+.++..+.++-.+
T Consensus 106 i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp EEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred eEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 999999954210 0011122222221 1233455566665543221 223467788888888888
Q ss_pred HHhhcc
Q 048507 359 VVAQHS 364 (1448)
Q Consensus 359 l~~~~~ 364 (1448)
++..+.
T Consensus 186 il~~~~ 191 (274)
T 2x8a_A 186 ILKTIT 191 (274)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 887654
No 251
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.42 E-value=0.035 Score=60.16 Aligned_cols=84 Identities=13% Similarity=0.069 Sum_probs=54.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCC-----CCCCHHHH-HHHHHHH
Q 048507 217 VIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTI-----DDSDLNLL-QEELKKK 290 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~-~~~l~~~ 290 (1448)
++-|.|++|+||||||.+++........=..++|++.....+.. .+++++.... ...+.+++ ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 68999999999999998887632211112468999988877764 2566654322 23455555 4333332
Q ss_pred --h-CCccEEEEEecCCC
Q 048507 291 --L-SQKKFLLVLDDVWN 305 (1448)
Q Consensus 291 --l-~~~~~LlVlDdv~~ 305 (1448)
+ ..+.-+||+|-+..
T Consensus 105 ~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HTCCTTCCEEEEEECSTT
T ss_pred HHhhccCceEEEEecccc
Confidence 3 35678999999943
No 252
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.37 E-value=0.0095 Score=62.14 Aligned_cols=114 Identities=10% Similarity=-0.107 Sum_probs=63.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCC--CCCCHHHHHHHHHHHh
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTI--DDSDLNLLQEELKKKL 291 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l 291 (1448)
...++.|+|..|+||||++..++.. ...+-..++.+...... . ....+++.++.... ......++.+.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 3478999999999999999888763 33332234444433321 1 12234444443211 1123345555555544
Q ss_pred CCcc-EEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchh
Q 048507 292 SQKK-FLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQE 335 (1448)
Q Consensus 292 ~~~~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 335 (1448)
.+.+ -+||+|.+..-..+..+.+ ..+.+ .|..||+|-++.+
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCSBC
T ss_pred hCCCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEecccc
Confidence 4444 4999999965433333333 23333 2778999988654
No 253
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.31 E-value=0.073 Score=60.63 Aligned_cols=155 Identities=13% Similarity=-0.017 Sum_probs=96.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH-HhCC
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKK-KLSQ 293 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~ 293 (1448)
.++..++|..|.||++.|+.+..... ...|+....+...... ++.++.+.+.. -+-+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~---------------------~~~~l~~~~~~~plf~ 75 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNT---------------------DWNAIFSLCQAMSLFA 75 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTC---------------------CHHHHHHHHHHHHHCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCC---------------------CHHHHHHHhcCcCCcc
Confidence 46889999999999999998876321 1233221122222222 33333333322 2346
Q ss_pred ccEEEEEecCCC-CChhhHhhhcccccCCCCCcEEEEEcCc-------hhhhhcc-CCcceEeCCCCCHHHHHHHHhhcc
Q 048507 294 KKFLLVLDDVWN-ENYNDWVRLSRPFEAGAPGSKIIVTTRN-------QEVADIM-GTASAYQLKKLSIDDCLAVVAQHS 364 (1448)
Q Consensus 294 ~~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~-------~~v~~~~-~~~~~~~l~~l~~~~a~~l~~~~~ 364 (1448)
++-++|+|+++. .....++.+...+....+++.+|+++.. ..+...+ .....++..+++.++....+.+.+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 677889999966 4445666666666555567777766543 2333332 234678999999999887776654
Q ss_pred cCCc-hhhHHHHHHHHHhcCCchHHHHH
Q 048507 365 LGSD-KLLEEIGKKIVAKCDGLPLAAQT 391 (1448)
Q Consensus 365 ~~~~-~~~~~~~~~i~~~~~g~PLal~~ 391 (1448)
.... ...++.+..+++.++|...++..
T Consensus 156 ~~~g~~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 156 KQLNLELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHTTCEECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHhchHHHHHHH
Confidence 3222 34467788899999998887754
No 254
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.17 E-value=0.042 Score=62.29 Aligned_cols=84 Identities=20% Similarity=0.090 Sum_probs=55.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCC-----CCCCCHHHHHHHHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQT-----IDDSDLNLLQEELK 288 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 288 (1448)
..+++.|.|.+|+||||+|..++... ...-..++|++.....+... ++.++... ....+.+++.+.+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~~-----a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPVY-----ARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHHH-----HHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 34688999999999999999887632 22223689999887766542 34443321 12345666666666
Q ss_pred HHhC-CccEEEEEecCC
Q 048507 289 KKLS-QKKFLLVLDDVW 304 (1448)
Q Consensus 289 ~~l~-~~~~LlVlDdv~ 304 (1448)
+..+ ...-+||+|.+.
T Consensus 146 ~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHTTTCCSEEEEECTT
T ss_pred HHHhcCCCCEEEEeChH
Confidence 6554 345699999984
No 255
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.16 E-value=0.044 Score=60.35 Aligned_cols=87 Identities=15% Similarity=0.060 Sum_probs=48.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCC-ccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSD-DFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLS 292 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 292 (1448)
...+++|+|.+|+||||++..++........ ..+..+.... .....+.+....+..+.......+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 3479999999999999999998763221111 2355555432 2233344444444444332222344555555543 3
Q ss_pred CccEEEEEecC
Q 048507 293 QKKFLLVLDDV 303 (1448)
Q Consensus 293 ~~~~LlVlDdv 303 (1448)
.+.=++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 34458889954
No 256
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.05 E-value=0.0077 Score=60.63 Aligned_cols=113 Identities=18% Similarity=0.157 Sum_probs=59.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCc---cCHHHHHHHHHHhccC------CCC--CCCC-----
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDD---FDVKGLTKTILRSVTK------QTI--DDSD----- 279 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~------~~~--~~~~----- 279 (1448)
..|.|++..|.||||.|-..+- +..++=..+.++..-.. ..... +++.+.. ... ...+
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~----~l~~L~v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERN----LLEPHGVEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHH----HHGGGTCEEEECCTTCCCCGGGHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHH----HHHhCCcEEEEcccccccCCCCcHHHH
Confidence 4566777777999999977765 22222224555544332 22233 3333320 001 1111
Q ss_pred --HHHHHHHHHHHhCCccE-EEEEecCCCC---ChhhHhhhcccccCCCCCcEEEEEcCch
Q 048507 280 --LNLLQEELKKKLSQKKF-LLVLDDVWNE---NYNDWVRLSRPFEAGAPGSKIIVTTRNQ 334 (1448)
Q Consensus 280 --~~~~~~~l~~~l~~~~~-LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 334 (1448)
........++.+.+.+| |||||++-.. .....+.+...+........||+|+|..
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 12223445555655555 9999998221 1122334444444444677899999985
No 257
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.03 E-value=0.045 Score=61.90 Aligned_cols=84 Identities=20% Similarity=0.115 Sum_probs=54.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCC-----CCCCHHHHHHHHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTI-----DDSDLNLLQEELK 288 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 288 (1448)
..+++.|+|.+|+||||||.+++... ...=..++|++.....+.. .++.++.... ...+.++..+.+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~--~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA--QAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 45789999999999999999987532 2222458899988766653 2344442211 2335566655555
Q ss_pred HHhC-CccEEEEEecCC
Q 048507 289 KKLS-QKKFLLVLDDVW 304 (1448)
Q Consensus 289 ~~l~-~~~~LlVlDdv~ 304 (1448)
.... .+.-+||+|.+.
T Consensus 133 ~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHTTTCCSEEEEECGG
T ss_pred HHHhcCCCCEEEEcChH
Confidence 5543 346699999983
No 258
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.94 E-value=0.08 Score=59.95 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=40.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCccccc----ccceEEEEEeCCccCHHHHHHHHHHhcc
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKRVQD----HFDLKAWTCVSDDFDVKGLTKTILRSVT 271 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 271 (1448)
+...++.|+|.+|+||||+|..++....... .-..++|++....++...+.. +++.++
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 3557999999999999999999876321111 224789999888777665543 344443
No 259
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.80 E-value=0.049 Score=58.55 Aligned_cols=90 Identities=11% Similarity=0.041 Sum_probs=51.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccc----ccceEEEEEeCCccCHHHHHHHHHHhccCCC---------CCCCCH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQD----HFDLKAWTCVSDDFDVKGLTKTILRSVTKQT---------IDDSDL 280 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------~~~~~~ 280 (1448)
...++.|+|++|+||||||..++....... .-..++|++....++...+. .+++.++... ....+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 346999999999999999999886321111 13568888877654544332 3344443221 011222
Q ss_pred HHH---HHHHHHHhC-CccEEEEEecCC
Q 048507 281 NLL---QEELKKKLS-QKKFLLVLDDVW 304 (1448)
Q Consensus 281 ~~~---~~~l~~~l~-~~~~LlVlDdv~ 304 (1448)
.+. ...+.+.+. .+.-+||+|.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 222 222333333 456788888873
No 260
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.73 E-value=0.06 Score=60.54 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=39.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccc----ccceEEEEEeCCccCHHHHHHHHHHhcc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQD----HFDLKAWTCVSDDFDVKGLTKTILRSVT 271 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 271 (1448)
...++.|+|.+|+||||+|.+++....... .-..++|++....++...+.. +++.++
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g 166 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALG 166 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhC
Confidence 346899999999999999999876321111 124689999888776665543 345543
No 261
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.65 E-value=0.03 Score=58.08 Aligned_cols=43 Identities=26% Similarity=0.238 Sum_probs=34.0
Q ss_pred ccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 192 GRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 192 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.|++.++++.+.+.+.. .....+|+|.|..|+||||+++.+..
T Consensus 2 ~~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CHHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35667788888886542 23568999999999999999999875
No 262
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.64 E-value=0.05 Score=58.04 Aligned_cols=115 Identities=13% Similarity=0.006 Sum_probs=60.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCC-------------------
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTI------------------- 275 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------------- 275 (1448)
..+++|+|.+|+|||||++.++..... .=..++|+.... ....+...+. .++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 368999999999999999998853221 112466666543 3344333322 2221100
Q ss_pred ----CCCCHHHHHHHHHHHhC-Ccc--EEEEEecCCCC---ChhhHhhhcccccC--CCCCcEEEEEcCch
Q 048507 276 ----DDSDLNLLQEELKKKLS-QKK--FLLVLDDVWNE---NYNDWVRLSRPFEA--GAPGSKIIVTTRNQ 334 (1448)
Q Consensus 276 ----~~~~~~~~~~~l~~~l~-~~~--~LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~ilvTtR~~ 334 (1448)
...+.+++.+.+.+.+. .++ .+||+|..... +......+...+.. ...|..||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 11245555555554442 233 39999998421 11222222222221 12477888888764
No 263
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.50 E-value=0.066 Score=60.53 Aligned_cols=84 Identities=18% Similarity=0.038 Sum_probs=53.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCC-----CCCCHHHHHHHHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTI-----DDSDLNLLQEELK 288 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 288 (1448)
..+++.|.|.+|+||||||.+++.... ..=..++|++.....+... ++.++.... ...+.+++.+.++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 446899999999999999999886322 2223688999877766442 334433211 2234555555554
Q ss_pred HHhC-CccEEEEEecCC
Q 048507 289 KKLS-QKKFLLVLDDVW 304 (1448)
Q Consensus 289 ~~l~-~~~~LlVlDdv~ 304 (1448)
...+ .+.-+||+|.+.
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 4432 445699999983
No 264
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.49 E-value=0.05 Score=67.92 Aligned_cols=98 Identities=20% Similarity=0.173 Sum_probs=57.2
Q ss_pred cCeEeccchhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCH
Q 048507 187 EAQVYGRETEKKDVVELLLRDDL-------SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDV 259 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 259 (1448)
-..+.|.++.++++.+.+.-... .+-...+-|.++|++|.|||.+|++++... ...| +.++.
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~--~~~f-----~~v~~---- 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QANF-----ISIKG---- 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT--TCEE-----EECCH----
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh--CCce-----EEecc----
Confidence 34567887777777766542110 011234567899999999999999999843 2222 33321
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCccEEEEEecCC
Q 048507 260 KGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQKKFLLVLDDVW 304 (1448)
Q Consensus 260 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~ 304 (1448)
. +++... -......+.+.+...-+..+.+|++|+++
T Consensus 545 ~----~l~s~~-----vGese~~vr~lF~~Ar~~~P~IifiDEiD 580 (806)
T 3cf2_A 545 P----ELLTMW-----FGESEANVREIFDKARQAAPCVLFFDELD 580 (806)
T ss_dssp H----HHHTTT-----CSSCHHHHHHHHHHHHTTCSEEEECSCGG
T ss_pred c----hhhccc-----cchHHHHHHHHHHHHHHcCCceeechhhh
Confidence 1 222221 12223334444444445678999999984
No 265
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.49 E-value=0.053 Score=61.09 Aligned_cols=89 Identities=13% Similarity=0.197 Sum_probs=53.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccc---------cc-----ceEEEEEeCCccCHHHHHHHHHHhccCCC-----
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQD---------HF-----DLKAWTCVSDDFDVKGLTKTILRSVTKQT----- 274 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----- 274 (1448)
...++.|+|.+|+|||++|.+++....... .. ..++|++....++..++.+ +++.++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 457999999999999999999875321111 11 4789999888776665553 344443321
Q ss_pred ----CCCCCHHH---HHHHHHHHhC--CccEEEEEecC
Q 048507 275 ----IDDSDLNL---LQEELKKKLS--QKKFLLVLDDV 303 (1448)
Q Consensus 275 ----~~~~~~~~---~~~~l~~~l~--~~~~LlVlDdv 303 (1448)
....+.++ +...+.+.+. .+.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 01122232 3334444443 34558888887
No 266
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.73 E-value=0.12 Score=57.45 Aligned_cols=38 Identities=16% Similarity=0.124 Sum_probs=26.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccc-eEEEEEeC
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFD-LKAWTCVS 254 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~ 254 (1448)
..+++|.|.+|+|||||++.++...... -. .++|+...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e 73 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLE 73 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCc
Confidence 4689999999999999999987632211 12 45666543
No 267
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.66 E-value=0.15 Score=56.43 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=33.2
Q ss_pred eccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 191 YGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 191 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
+|....+..+...+.... ......+|+|.|+.|+||||+|+.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 455555666666665542 344678999999999999999999875
No 268
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.39 E-value=0.28 Score=54.70 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=37.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHh
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRS 269 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 269 (1448)
...++.|.|.+|+||||+|..++.....++ ..++|++.. .+..++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 446899999999999999999886432222 567888765 4566666666654
No 269
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.19 E-value=0.23 Score=54.66 Aligned_cols=89 Identities=18% Similarity=0.150 Sum_probs=49.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCH--HHHHHHHHHhccCCC---CCCCCHHHH-HHHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDV--KGLTKTILRSVTKQT---IDDSDLNLL-QEEL 287 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~---~~~~~~~~~-~~~l 287 (1448)
...+++|+|.+|+||||++..++.... ..-..+.++.... +.. .+-+...++..+... ....+...+ .+.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D~-~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADT-FRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECT-TCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEcccc-ccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 458999999999999999999886322 2222355555432 222 222333444433221 112233332 3345
Q ss_pred HHHhCCccEEEEEecCCC
Q 048507 288 KKKLSQKKFLLVLDDVWN 305 (1448)
Q Consensus 288 ~~~l~~~~~LlVlDdv~~ 305 (1448)
.+.+..+.-++|+|-...
T Consensus 180 ~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 180 AHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHTTCSEEEEEECCC
T ss_pred HHHHhcCCCEEEEECCCc
Confidence 554555555888997743
No 270
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.15 E-value=0.053 Score=64.22 Aligned_cols=41 Identities=17% Similarity=0.256 Sum_probs=35.3
Q ss_pred EeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 190 VYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
++|++..++.+...+..+ .-|.++|++|+|||++|+.+++.
T Consensus 24 ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp CSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 689999999988888654 35789999999999999999974
No 271
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.94 E-value=0.09 Score=57.72 Aligned_cols=41 Identities=22% Similarity=0.294 Sum_probs=29.4
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 196 EKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+++++..+..... ......+|.|.|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 15 RLNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34455555544322 334568899999999999999999986
No 272
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.92 E-value=0.078 Score=55.22 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=28.1
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 196 EKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
-+++|.+.+.+. .....+|+|+|+.|+|||||++.+..
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344555555432 23568999999999999999999876
No 273
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.70 E-value=0.76 Score=53.00 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
...+|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999988876
No 274
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.58 E-value=0.26 Score=56.48 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=36.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccc----ccccceEEEEEeCCccCHHHHHHHHHHhcc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRV----QDHFDLKAWTCVSDDFDVKGLTKTILRSVT 271 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 271 (1448)
.-.++.|+|.+|+|||||+..++-.... .+.-..++|++....++...+ +.+++.++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 4479999999999999999976521111 112346888887766555443 33555544
No 275
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.53 E-value=0.3 Score=55.24 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=32.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccc----ceEEEEEeCCccCHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHF----DLKAWTCVSDDFDVK 260 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~ 260 (1448)
...++.|+|+.|+|||||+..++......... ..++|++....+...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~ 180 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 180 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHH
Confidence 55899999999999999999988632111111 245888876654433
No 276
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.51 E-value=0.071 Score=54.68 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
...+++|+|+.|+||||+++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3478999999999999999999873
No 277
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.47 E-value=0.057 Score=54.67 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 278
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.43 E-value=0.085 Score=57.82 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=22.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
....+|+|+|..|+||||+|+.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999998876
No 279
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.42 E-value=0.27 Score=54.69 Aligned_cols=52 Identities=17% Similarity=0.048 Sum_probs=36.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSV 270 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 270 (1448)
..++.|.|.+|+||||+|..++..... .=..++|++. .-+..++...++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 468999999999999999998864322 2235667665 345677777766543
No 280
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.41 E-value=0.11 Score=57.96 Aligned_cols=86 Identities=20% Similarity=0.158 Sum_probs=46.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccc-ccccceEEEEEeCCccCHHHHHHHHHHhccC----CCCCCCCHHHHH----
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRV-QDHFDLKAWTCVSDDFDVKGLTKTILRSVTK----QTIDDSDLNLLQ---- 284 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~----~~~~~~~~~~~~---- 284 (1448)
....++|+|..|+|||||++.+.+.... ...+. ++++-+.+..... .++.+.+.. ...+........
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev---~~~~~~~~~~vV~atadep~~~r~~~a~~ 248 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEV---TEMQRLVKGEVVASTFDEPASRHVQVAEM 248 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHH---HHHHTTCSSEEEEECTTSCHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHH---HHHHHHhCeEEEEeCCCCCHHHHHHHHHH
Confidence 3468899999999999999988763211 12233 3456666543221 223333321 111111111111
Q ss_pred -HHHHHHh--CCccEEEEEecC
Q 048507 285 -EELKKKL--SQKKFLLVLDDV 303 (1448)
Q Consensus 285 -~~l~~~l--~~~~~LlVlDdv 303 (1448)
-.+.+++ +++.+||++||+
T Consensus 249 alt~AEyfrd~G~dVLil~Dsl 270 (422)
T 3ice_A 249 VIEKAKRLVEHKKDVIILLDSI 270 (422)
T ss_dssp HHHHHHHHHHTSCEEEEEEECH
T ss_pred HHHHHHHHHhcCCCEEEEEeCc
Confidence 1112222 588999999999
No 281
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.24 E-value=0.062 Score=54.01 Aligned_cols=22 Identities=23% Similarity=0.156 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+|+|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 282
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.18 E-value=0.13 Score=57.15 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=32.3
Q ss_pred eccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 191 YGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 191 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
|+-+.-++++.+.+...- ..+....|.|+|++|+||||+|+.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i--~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRI--EDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTT--TTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHh--ccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 344556666777664332 233456789999999999999999886
No 283
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.15 E-value=0.069 Score=55.18 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..+|+|+|+.|+||||+|+.++.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 284
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.15 E-value=0.07 Score=53.90 Aligned_cols=20 Identities=50% Similarity=0.755 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCcHHHHHHHH
Q 048507 216 SVIPIIGMGGLGKTTLAQLV 235 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v 235 (1448)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999998
No 285
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.98 E-value=0.11 Score=55.89 Aligned_cols=42 Identities=21% Similarity=0.196 Sum_probs=30.2
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 195 TEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 195 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
...+++...+..... ......+|.|+|++|+||||+|+.+..
T Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 13 HALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 334455555554432 344568899999999999999999986
No 286
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.93 E-value=0.081 Score=53.62 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999986
No 287
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.88 E-value=0.36 Score=56.06 Aligned_cols=40 Identities=20% Similarity=0.135 Sum_probs=27.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVS 254 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 254 (1448)
..++|.++|.+|+||||+|..++.....+.. ..+..+++.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G-~kVllvd~D 138 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHK-KKVLVVSAD 138 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSC-CCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcC-CeEEEEecC
Confidence 4689999999999999999998863322212 234555554
No 288
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=91.77 E-value=0.1 Score=53.99 Aligned_cols=25 Identities=36% Similarity=0.371 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
...+|+|+|+.|+||||+|+.++..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3479999999999999999999863
No 289
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.75 E-value=0.41 Score=51.25 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=28.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSD 255 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 255 (1448)
...++.|.|.+|+||||+|.+++... ...=..++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccC
Confidence 34689999999999999998886532 11223577777554
No 290
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.69 E-value=0.27 Score=56.84 Aligned_cols=51 Identities=22% Similarity=0.313 Sum_probs=33.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCcc-CHHHHHHHHH
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDF-DVKGLTKTIL 267 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~ 267 (1448)
..++|+|..|+||||||..+....... .-+..+++.+.+.. ...+++.++.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhh
Confidence 468899999999999999988643221 22345666666654 3445555454
No 291
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.61 E-value=0.35 Score=53.12 Aligned_cols=90 Identities=14% Similarity=0.046 Sum_probs=49.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCcc-CHHHHHHHHHHhccCCC---CCCCCHHHHHHHHHHH
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDF-DVKGLTKTILRSVTKQT---IDDSDLNLLQEELKKK 290 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~~ 290 (1448)
..+++++|.+|+||||++..++.... ..=..+.++...... ...+.++...+..+... ....+...+.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 57899999999999999998886322 222245666654332 22233334444433321 1223444443333333
Q ss_pred hC-CccEEEEEecCCCC
Q 048507 291 LS-QKKFLLVLDDVWNE 306 (1448)
Q Consensus 291 l~-~~~~LlVlDdv~~~ 306 (1448)
++ ..-=++|+|-....
T Consensus 176 ~~~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAGRH 192 (297)
T ss_dssp HHHTTCSEEEEECCCSC
T ss_pred HHhCCCCEEEEeCCCCc
Confidence 33 33337889987443
No 292
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.52 E-value=0.37 Score=53.01 Aligned_cols=86 Identities=14% Similarity=0.106 Sum_probs=46.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHH--HHHHHHHHhccCCCC---CCCCHHHHHH-HHH
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVK--GLTKTILRSVTKQTI---DDSDLNLLQE-ELK 288 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~~---~~~~~~~~~~-~l~ 288 (1448)
..+++|+|.+|+||||++..++.... ..=..+.++..... ... ..+..+.+..+.... ...++.++.+ .+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~-~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQ-RPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSS-CHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcc-cHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 47899999999999999999886322 22123555554322 222 122333343332211 1234444433 333
Q ss_pred HHhCCccEEEEEecC
Q 048507 289 KKLSQKKFLLVLDDV 303 (1448)
Q Consensus 289 ~~l~~~~~LlVlDdv 303 (1448)
.....+.=+||+|-.
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 332234457888976
No 293
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.51 E-value=0.085 Score=53.74 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
+.|.|+|+.|+||||+|+.++.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999986
No 294
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=91.51 E-value=0.09 Score=53.22 Aligned_cols=23 Identities=13% Similarity=0.416 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999986
No 295
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.40 E-value=0.13 Score=51.76 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
...+++|+|+.|+||||+|+.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999875
No 296
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.39 E-value=0.58 Score=53.90 Aligned_cols=87 Identities=15% Similarity=0.128 Sum_probs=45.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHH--HHHHHHHhccCCCC---CCCCHHHHHHHHHH
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKG--LTKTILRSVTKQTI---DDSDLNLLQEELKK 289 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~--~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 289 (1448)
..+++|+|.+|+||||++..++.... ..=..+..+.+ +.+.... .++...+..+.+.. ...++..+.....+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~--~~g~~Vllvd~-D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~ 174 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAA-DTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEEC-CSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEeec-cccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHH
Confidence 47899999999999999999886322 22223455554 3333322 23333444332211 12344444332223
Q ss_pred HhCCccE-EEEEecCC
Q 048507 290 KLSQKKF-LLVLDDVW 304 (1448)
Q Consensus 290 ~l~~~~~-LlVlDdv~ 304 (1448)
.++.+.| ++|+|-.-
T Consensus 175 ~~~~~~~DvVIIDTaG 190 (425)
T 2ffh_A 175 KARLEARDLILVDTAG 190 (425)
T ss_dssp HHHHTTCSEEEEECCC
T ss_pred HHHHCCCCEEEEcCCC
Confidence 3322233 67778653
No 297
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.38 E-value=0.084 Score=53.06 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+|+|+|+.|+||||+|+.++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 298
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=91.34 E-value=0.12 Score=59.26 Aligned_cols=49 Identities=35% Similarity=0.360 Sum_probs=35.2
Q ss_pred eEeccchhHHHHHHHHhcC-------C--CCCCCCcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 189 QVYGRETEKKDVVELLLRD-------D--LSNDGGFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~-------~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.++|.+..++.+..++... . .......+.+.++|++|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4689888888888877310 0 00111345688999999999999999997
No 299
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.28 E-value=0.11 Score=53.30 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
...+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999986
No 300
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.22 E-value=0.11 Score=53.83 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..+++|+|+.|+||||+|+.++.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 301
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.20 E-value=0.33 Score=56.01 Aligned_cols=90 Identities=12% Similarity=0.033 Sum_probs=48.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCC-ccCHHHHHHHHHHhccCCCC---CCCCHHHHH-HHHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSD-DFDVKGLTKTILRSVTKQTI---DDSDLNLLQ-EELK 288 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~-~~l~ 288 (1448)
..++|.++|.+|+||||++..++...... . ..+..+.+.. .....+.+....+..+.+.. ...++..+. ..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~-G-~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR-G-YKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT-T-CCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-C-CeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHH
Confidence 46899999999999999999888633222 2 2344444432 12233334444444443221 222333333 3333
Q ss_pred HHhCCccEEEEEecCCC
Q 048507 289 KKLSQKKFLLVLDDVWN 305 (1448)
Q Consensus 289 ~~l~~~~~LlVlDdv~~ 305 (1448)
.......=++|+|-...
T Consensus 174 ~a~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTAGR 190 (433)
T ss_dssp HTTTTTCSEEEEEECCC
T ss_pred HHHhcCCCEEEEECCCC
Confidence 33323444778898753
No 302
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.07 E-value=0.52 Score=52.31 Aligned_cols=39 Identities=18% Similarity=0.159 Sum_probs=27.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVS 254 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 254 (1448)
..++++|+|.+|+||||++..++... ...=..+.++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l--~~~g~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY--AELGYKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH--HHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCC
Confidence 45899999999999999999988632 2222235555543
No 303
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.00 E-value=0.11 Score=52.15 Aligned_cols=22 Identities=36% Similarity=0.680 Sum_probs=19.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHH
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVY 236 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~ 236 (1448)
..+++|+|+.|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4789999999999999999754
No 304
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=90.99 E-value=0.11 Score=52.68 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
....|+|+|+.|+||||+|+.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 305
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=90.93 E-value=0.6 Score=51.97 Aligned_cols=24 Identities=38% Similarity=0.407 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
...+++|+|+.|+||||+++.++.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999886
No 306
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.93 E-value=0.17 Score=51.22 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=56.4
Q ss_pred ccCceeEEEeCCC-Ccc-----ccCccccCCccceEEeccCcccc-----ccChhhhccccccEEeccCCchh----hcc
Q 048507 593 KLQRLRVFSLRGY-RID-----ELPDSIGDLRYFRYLNLSGTEIR-----TLPESVNKLYNLHSLLLEDCDRL----KKL 657 (1448)
Q Consensus 593 ~l~~L~~L~L~~n-~i~-----~lp~~i~~l~~L~~L~Ls~n~i~-----~lp~~i~~L~~L~~L~L~~n~~~----~~l 657 (1448)
.-+.|+.|+|+++ .|. .|-+.+..-..|+.|+|++|.|. .+-+.+..-+.|++|+|++|... ..+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 5567888888875 664 24455666678888888888876 34456667788888888887432 223
Q ss_pred cccccccCCCCeeeecCC
Q 048507 658 CADMGNLAKLHHLKNSNT 675 (1448)
Q Consensus 658 p~~i~~L~~L~~L~l~~~ 675 (1448)
-..+..-+.|++|+|++|
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 334555567888888765
No 307
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=90.92 E-value=0.12 Score=53.69 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
...+++|+|+.|+||||+++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3468999999999999999999863
No 308
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=90.82 E-value=0.13 Score=52.55 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 309
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=90.77 E-value=0.12 Score=53.07 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 310
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.76 E-value=0.11 Score=52.75 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.++|.|+|++|+||||+|+.++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 46788999999999999999986
No 311
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.75 E-value=0.14 Score=53.16 Aligned_cols=24 Identities=38% Similarity=0.385 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
...+|+|+|+.|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999986
No 312
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=90.73 E-value=0.13 Score=53.42 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 36899999999999999999875
No 313
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.71 E-value=1 Score=53.08 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=21.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
...++|+|+|.+|+||||++..++.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999885
No 314
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=90.71 E-value=0.13 Score=55.39 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 315
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.67 E-value=0.14 Score=53.12 Aligned_cols=25 Identities=36% Similarity=0.373 Sum_probs=22.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+..+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999986
No 316
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=90.67 E-value=0.1 Score=54.07 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..+|+|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999886
No 317
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.66 E-value=0.12 Score=51.70 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..+|+|.|+.|+||||+|+.+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 318
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.63 E-value=0.029 Score=56.91 Aligned_cols=22 Identities=27% Similarity=0.070 Sum_probs=19.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.++.|+|+.|+||||++..++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999977665
No 319
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.62 E-value=0.16 Score=52.67 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
...+|+|.|+.|+||||+|+.++.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999986
No 320
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=90.49 E-value=0.13 Score=55.25 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.++.|.|+.|+||||+|+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999986
No 321
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.49 E-value=0.15 Score=53.30 Aligned_cols=24 Identities=46% Similarity=0.339 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 447899999999999999999876
No 322
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=90.41 E-value=0.14 Score=51.41 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048507 217 VIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998753
No 323
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=90.40 E-value=0.13 Score=52.65 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 324
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.33 E-value=0.66 Score=55.74 Aligned_cols=54 Identities=11% Similarity=0.041 Sum_probs=37.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSV 270 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 270 (1448)
...++.|.|.+|+||||+|.+++.+...+ +=..++|++... +..++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 34688999999999999999988643222 113577777644 4667776665443
No 325
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.31 E-value=0.15 Score=53.04 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
..+++|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999999863
No 326
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.31 E-value=0.15 Score=52.48 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..+|+|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 327
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.30 E-value=0.12 Score=53.60 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..++|+|+|++|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 328
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=90.29 E-value=0.11 Score=52.83 Aligned_cols=22 Identities=36% Similarity=0.529 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999985
No 329
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.20 E-value=0.17 Score=52.52 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
...++|.|.|++|+||+|.|+.++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999986
No 330
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.20 E-value=0.019 Score=73.08 Aligned_cols=52 Identities=25% Similarity=0.211 Sum_probs=36.9
Q ss_pred cCeEeccchhHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 187 EAQVYGRETEKKDVVELLLRDDLS-------NDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
-.+++|.+..++++.+.+.-.... .-...+.+.++|++|+|||+||+.++..
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 345788888888888776421100 1123456889999999999999999973
No 331
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=90.20 E-value=0.18 Score=51.28 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
...+|.|.|++|+||||+|+.++..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 332
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.19 E-value=0.16 Score=52.74 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
No 333
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=90.13 E-value=0.14 Score=52.63 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..+|+|.|++|+||||+|+.++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 334
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=90.12 E-value=0.1 Score=52.66 Aligned_cols=22 Identities=36% Similarity=0.529 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
|.|.|+|+.|+|||||++++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999876
No 335
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.03 E-value=0.16 Score=54.92 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 336
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=89.99 E-value=0.15 Score=52.94 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048507 217 VIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.|+|.|+.|+||||+|+.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999986
No 337
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=89.98 E-value=0.21 Score=50.41 Aligned_cols=37 Identities=11% Similarity=0.040 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 197 KKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
+..+..++.. -+..+.+.|+|++|+||||+|.++++.
T Consensus 45 ~~~l~~~~~~-----iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKG-----TPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHT-----CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhc-----CCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 4555555542 123457899999999999999998873
No 338
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=89.92 E-value=0.11 Score=52.72 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+|+|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999986
No 339
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=89.92 E-value=0.17 Score=51.49 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
...|+|.|++|+||||+|+.++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 340
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=89.90 E-value=0.15 Score=52.96 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048507 217 VIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
+|+|+|+.|+||||+|+.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999886
No 341
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.86 E-value=0.16 Score=50.08 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..++++|.|..|+||||++..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999886
No 342
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=89.85 E-value=0.17 Score=52.19 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
...+|.|.|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999986
No 343
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=89.84 E-value=0.15 Score=51.35 Aligned_cols=21 Identities=43% Similarity=0.558 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048507 217 VIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.|.|.|++|+||||+|+.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 344
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=89.84 E-value=0.17 Score=51.44 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.-.+|+|+|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999886
No 345
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.84 E-value=0.21 Score=48.95 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
...+++|+|+.|+|||||++.++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999999886
No 346
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=89.83 E-value=0.18 Score=55.91 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=28.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSD 255 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 255 (1448)
+.+||+|.|-|||||||.|..++......+ ..+.-+++..
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~G--kkVllID~Dp 86 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDP 86 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESS
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 569999999999999999877765221112 2466666653
No 347
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=89.76 E-value=0.12 Score=59.20 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=32.1
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
..++|.+..++.+....... ...-+.|+|++|+|||++|+.+++.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~------~~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDP------GIGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCG------GGCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCC------CCceEEEECCCCccHHHHHHHHHHh
Confidence 35889988666554444322 1123889999999999999999863
No 348
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=89.71 E-value=0.19 Score=50.98 Aligned_cols=24 Identities=21% Similarity=0.571 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..++++|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999885
No 349
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=89.71 E-value=0.61 Score=54.27 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
....+++|+|..|+||||+++.++.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHH
Confidence 3468999999999999999999886
No 350
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.71 E-value=0.62 Score=54.99 Aligned_cols=51 Identities=16% Similarity=0.131 Sum_probs=34.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTIL 267 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1448)
...++.|.|.+|+||||+|..++....... =..++|++... +..++...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHH
Confidence 346899999999999999999886432211 12577777543 4455555554
No 351
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=89.68 E-value=0.25 Score=46.52 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=42.8
Q ss_pred eEEeccCcccc--ccChhhhccccccEEeccCCchhhccccc-ccccCCCCeeeecCCC
Q 048507 621 RYLNLSGTEIR--TLPESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLAKLHHLKNSNTK 676 (1448)
Q Consensus 621 ~~L~Ls~n~i~--~lp~~i~~L~~L~~L~L~~n~~~~~lp~~-i~~L~~L~~L~l~~~~ 676 (1448)
.+++.+++.++ .+|..+. .+|++|+|++| .+..+|.. |..+++|++|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 47888999998 8886543 47999999997 56667654 7889999999999987
No 352
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=89.62 E-value=0.21 Score=51.19 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..+|+|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999976
No 353
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=89.61 E-value=0.2 Score=55.56 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
...+|+|.|+.|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 468999999999999999999875
No 354
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.60 E-value=0.24 Score=52.89 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
....|+|.|++|+||||+|+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999975
No 355
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=89.60 E-value=0.14 Score=52.71 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999875
No 356
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=89.55 E-value=0.16 Score=53.63 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 357
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.49 E-value=0.19 Score=52.43 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
.+|+|.|++|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999873
No 358
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.46 E-value=0.48 Score=64.80 Aligned_cols=84 Identities=18% Similarity=0.038 Sum_probs=55.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCC-----CCCCHHHHHHHHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTI-----DDSDLNLLQEELK 288 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 288 (1448)
..+.|.|+|++|+|||+||.+++.... .+=..++|+++.+..+... ++.++.+.. .....++..+.++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 457899999999999999999876332 2223578888888776665 334432110 2233455555555
Q ss_pred HHhC-CccEEEEEecCC
Q 048507 289 KKLS-QKKFLLVLDDVW 304 (1448)
Q Consensus 289 ~~l~-~~~~LlVlDdv~ 304 (1448)
+..+ .+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 5543 567799999983
No 359
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.42 E-value=0.35 Score=58.71 Aligned_cols=104 Identities=16% Similarity=0.193 Sum_probs=53.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC---
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLS--- 292 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~--- 292 (1448)
+++.|.|.+|+||||++..+.......+ ..+.+.+...... ..+.+.++.. ......+.........
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g---~~Vl~~ApT~~Aa----~~L~e~~~~~---a~Tih~ll~~~~~~~~~~~ 274 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLG---LEVGLCAPTGKAA----RRLGEVTGRT---ASTVHRLLGYGPQGFRHNH 274 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEESSHHHH----HHHHHHHTSC---EEEHHHHTTEETTEESCSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcC---CeEEEecCcHHHH----HHhHhhhccc---HHHHHHHHcCCcchhhhhh
Confidence 5888999999999999998876322111 2333443332222 2222222211 1111111000000000
Q ss_pred ---CccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcC
Q 048507 293 ---QKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTR 332 (1448)
Q Consensus 293 ---~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR 332 (1448)
.+.-+||+|.+...+...+..+...++ .+.++|+.--
T Consensus 275 ~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD 314 (574)
T 3e1s_A 275 LEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGD 314 (574)
T ss_dssp SSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEEC
T ss_pred cccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEec
Confidence 122489999997766666777766655 4667766543
No 360
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=89.42 E-value=0.14 Score=51.37 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 361
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.39 E-value=0.22 Score=53.40 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
...+|+|.|+.|+||||+++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999999875
No 362
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=89.38 E-value=0.18 Score=54.08 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..+|+|+|+.|+||||+++.++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 363
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.36 E-value=0.16 Score=52.31 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+|+|.|++|+||||+|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 364
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.32 E-value=0.18 Score=50.19 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048507 217 VIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 365
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=89.26 E-value=0.21 Score=50.38 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
...+|+|.|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 366
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=89.26 E-value=0.53 Score=49.94 Aligned_cols=100 Identities=15% Similarity=0.200 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCc-cccccc-ceEEEEEeCCccCHHHHHHHHHHhccCCC
Q 048507 197 KKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDK-RVQDHF-DLKAWTCVSDDFDVKGLTKTILRSVTKQT 274 (1448)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 274 (1448)
.++++..+..+ +.+.|.|..|+||||+...+.-+. ...+.. ...+.+.........++...+...++...
T Consensus 66 q~~~i~~i~~g--------~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~ 137 (235)
T 3llm_A 66 ESEILEAISQN--------SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEP 137 (235)
T ss_dssp HHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCT
T ss_pred HHHHHHHHhcC--------CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcccc
Confidence 44455555443 478999999999998765554321 111121 22333333333333444444544433211
Q ss_pred C---------------C-----CCCHHHHHHHHHHHhCCccEEEEEecCCC
Q 048507 275 I---------------D-----DSDLNLLQEELKKKLSQKKFLLVLDDVWN 305 (1448)
Q Consensus 275 ~---------------~-----~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 305 (1448)
. . ......+.+.+...+.+ --+||+|.++.
T Consensus 138 ~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~-~~~lVlDEah~ 187 (235)
T 3llm_A 138 GKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRG-ISHVIVDEIHE 187 (235)
T ss_dssp TSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTT-CCEEEECCTTS
T ss_pred CceEEEeechhhccCCCCCeEEEECHHHHHHHHHhhhcC-CcEEEEECCcc
Confidence 0 0 01345555666554333 34789999975
No 367
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=89.25 E-value=0.13 Score=52.15 Aligned_cols=23 Identities=35% Similarity=0.317 Sum_probs=16.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 368
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.22 E-value=0.38 Score=49.37 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048507 217 VIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 369
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=89.17 E-value=0.2 Score=52.04 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999875
No 370
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=88.98 E-value=1.3 Score=50.97 Aligned_cols=55 Identities=22% Similarity=0.287 Sum_probs=38.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCcc-CHHHHHHHHHHh
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDF-DVKGLTKTILRS 269 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 269 (1448)
+-..++|.|..|+|||+|+..+++.. .+.+-+.++++-+.+.. .+.++.+++.+.
T Consensus 152 kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 152 KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 34578999999999999999988632 12233556777777664 455666776654
No 371
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=88.96 E-value=0.18 Score=56.91 Aligned_cols=110 Identities=13% Similarity=0.096 Sum_probs=58.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccccce-EEEEEeCCccCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDL-KAWTCVSDDFDVKGLTKTILRSVTKQTIDDSDLNLLQEELKKKLSQK 294 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1448)
.+++|+|+.|+||||+.+.+... ....... ++.+.-.-.+..... ..++.+.. ...+.....+.+...|...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i~t~ed~~e~~~~~~-~~~v~q~~----~~~~~~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHILTIEDPIEFVHESK-KCLVNQRE----VHRDTLGFSEALRSALRED 196 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCS-SSEEEEEE----BTTTBSCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEEEEccCcHHhhhhcc-ccceeeee----eccccCCHHHHHHHHhhhC
Confidence 59999999999999999988752 1111112 222221111100000 00000000 0011123345788888888
Q ss_pred cEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchhhh
Q 048507 295 KFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQEVA 337 (1448)
Q Consensus 295 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 337 (1448)
+=+|++|...+. +.+..+.... ..|..|++|+-....+
T Consensus 197 PdvillDEp~d~--e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 197 PDIILVGEMRDL--ETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CSEEEESCCCSH--HHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred cCEEecCCCCCH--HHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 999999999643 4444433332 2366688888765443
No 372
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=88.94 E-value=0.22 Score=54.92 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
...+++|+|+.|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999999885
No 373
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=88.82 E-value=0.21 Score=51.30 Aligned_cols=21 Identities=43% Similarity=0.692 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048507 217 VIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 374
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=88.79 E-value=0.24 Score=54.11 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVY 236 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~ 236 (1448)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999987
No 375
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=88.79 E-value=0.18 Score=52.73 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999876
No 376
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=88.77 E-value=0.81 Score=52.96 Aligned_cols=55 Identities=22% Similarity=0.244 Sum_probs=39.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCcc-CHHHHHHHHHHh
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDF-DVKGLTKTILRS 269 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 269 (1448)
+-..++|.|..|+|||+|+.++.+.. .+.+-+.++++-+.+.. ...++..++.+.
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 34568999999999999999988732 12234677888887765 456677777653
No 377
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=88.76 E-value=0.21 Score=52.54 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..|.|.|++|+||||+|+.++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999986
No 378
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=88.71 E-value=0.12 Score=57.50 Aligned_cols=53 Identities=15% Similarity=0.086 Sum_probs=33.6
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccc-cccceEEEEEeCCc
Q 048507 198 KDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQ-DHFDLKAWTCVSDD 256 (1448)
Q Consensus 198 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~ 256 (1448)
-++++.+..- .+...++|+|.+|+|||+|+..+++..... ..+. ++++-+.+.
T Consensus 163 iraID~l~Pi-----grGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPI-----GKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHHSCC-----BTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred chhhhhcccc-----cCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 3566666432 234577999999999999999988732111 1222 345666654
No 379
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=88.68 E-value=0.33 Score=51.14 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
....|+|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4588999999999999999998864
No 380
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=88.65 E-value=0.23 Score=51.85 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
...+++|+|+.|+|||||.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 347999999999999999999875
No 381
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=88.65 E-value=0.5 Score=56.02 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048507 217 VIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
.+.|.|.+|+|||+++..+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 8899999999999999888763
No 382
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=88.53 E-value=0.23 Score=53.33 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..+|+|+|+.|+||||+++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999985
No 383
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=88.52 E-value=0.44 Score=52.87 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
...+|+|+|+.|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 384
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=88.46 E-value=0.21 Score=52.03 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..+|+|.|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 385
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=88.41 E-value=0.23 Score=51.99 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 386
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=88.33 E-value=1.2 Score=52.24 Aligned_cols=53 Identities=17% Similarity=0.066 Sum_probs=36.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHh
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRS 269 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 269 (1448)
...++.|.|.+|+||||+|..++...... .=..++|++.. .+..++...++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHH
Confidence 34689999999999999999988643211 11357777764 3556666666543
No 387
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=88.31 E-value=0.58 Score=49.43 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=29.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccc---cc-ccceEEEEEeCCc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRV---QD-HFDLKAWTCVSDD 256 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~-~f~~~~wv~~~~~ 256 (1448)
.-.+++|+|+.|+|||||++.++..... .. .-..++|+.....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 4479999999999999999999752111 11 2345778776543
No 388
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=88.17 E-value=0.22 Score=52.66 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
...|.|.|++|+||||+|+.++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 389
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.14 E-value=0.97 Score=46.75 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
...|.|.|+.|+||||+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 478999999999999999999863
No 390
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=88.02 E-value=0.34 Score=55.92 Aligned_cols=51 Identities=25% Similarity=0.359 Sum_probs=35.4
Q ss_pred cCeEeccchhHHHHHHHHhcC--------CCCCCCCcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 187 EAQVYGRETEKKDVVELLLRD--------DLSNDGGFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
+..++|.+..++.+..++... ........+-+.++|++|+|||++|+.++.
T Consensus 14 d~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 345788888888877666321 000111335688999999999999999987
No 391
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=88.00 E-value=0.29 Score=50.98 Aligned_cols=23 Identities=30% Similarity=0.267 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..+|.|.|+.|+||||+|+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999886
No 392
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=87.94 E-value=0.26 Score=50.96 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
..|+|.|+.|+||||+|+.+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999873
No 393
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=87.88 E-value=0.25 Score=51.65 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048507 217 VIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 394
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=87.73 E-value=0.31 Score=51.05 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999874
No 395
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=87.66 E-value=0.23 Score=52.30 Aligned_cols=23 Identities=26% Similarity=0.223 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
...|.|.|++|+||||+|+.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 396
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=87.63 E-value=0.27 Score=51.47 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048507 217 VIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 397
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=87.51 E-value=0.69 Score=47.26 Aligned_cols=50 Identities=20% Similarity=0.185 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHH
Q 048507 217 VIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILR 268 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 268 (1448)
.|+|-|..|+||||.++.+++. ....-..+++..-.......+..+.++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~--L~~~g~~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY--LEKRGKKVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCCCcHHHHHHHHhh
Confidence 4778899999999999999873 3333223444444333344455555543
No 398
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=87.43 E-value=0.38 Score=50.48 Aligned_cols=40 Identities=25% Similarity=0.272 Sum_probs=28.8
Q ss_pred cchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 193 RETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
.++..+.+.+.+... ..++|+|+|.+|+|||||+..+...
T Consensus 14 ~~~~~~~~~~~~~~~------~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 14 NKRLAEKNREALRES------GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHH------TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhccc------CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 334455555544322 4689999999999999999998863
No 399
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=87.39 E-value=0.23 Score=52.94 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+|+|+|+.|+||||+++.++.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 400
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=87.30 E-value=0.34 Score=53.38 Aligned_cols=24 Identities=38% Similarity=0.394 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
...+++|+|+.|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357999999999999999999886
No 401
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=87.29 E-value=0.26 Score=49.91 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048507 217 VIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
+++|+|+.|+|||||++.++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 689999999999999999876
No 402
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=87.12 E-value=0.31 Score=53.94 Aligned_cols=22 Identities=36% Similarity=0.371 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+|+|.|+.|+||||+|+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999986
No 403
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=87.11 E-value=0.31 Score=60.05 Aligned_cols=43 Identities=26% Similarity=0.294 Sum_probs=36.4
Q ss_pred CeEeccchhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 188 AQVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
..++|.+..++.+...+..+ ..+.|+|++|+||||+|+.++..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46889998888888887643 47899999999999999999873
No 404
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=86.94 E-value=0.51 Score=49.65 Aligned_cols=25 Identities=36% Similarity=0.414 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
...+|+|.|+.|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999874
No 405
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=86.93 E-value=0.32 Score=51.54 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+++|+|+.|+|||||.+.++-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999985
No 406
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.91 E-value=0.87 Score=62.34 Aligned_cols=84 Identities=19% Similarity=0.048 Sum_probs=57.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCC-----CCCCHHHHHHHHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTI-----DDSDLNLLQEELK 288 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 288 (1448)
..+++.|+|.+|+||||||.+++.... ..=..++|++.....+... ++.++.... +..+.+++.+.++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 457999999999999999999886432 2223688998887776542 445544321 3346666666665
Q ss_pred HHh-CCccEEEEEecCC
Q 048507 289 KKL-SQKKFLLVLDDVW 304 (1448)
Q Consensus 289 ~~l-~~~~~LlVlDdv~ 304 (1448)
+.. ..+.-+||+|-+.
T Consensus 455 ~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCcEEEECCHH
Confidence 544 3456699999984
No 407
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=86.91 E-value=1.6 Score=50.14 Aligned_cols=27 Identities=26% Similarity=0.223 Sum_probs=23.6
Q ss_pred CCCCcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 211 NDGGFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 211 ~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.....++..|.|.+|.||||+.++.++
T Consensus 157 ~~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 157 HVSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccccEEEEEcCCCCCHHHHHHHHhc
Confidence 345789999999999999999988875
No 408
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=86.88 E-value=0.35 Score=48.88 Aligned_cols=89 Identities=16% Similarity=0.143 Sum_probs=64.4
Q ss_pred hhhhcccCceeEEEeCCCCccc-----cCccccCCccceEEeccCcccc-----ccChhhhccccccEEeccCCc--hhh
Q 048507 588 LTELFKLQRLRVFSLRGYRIDE-----LPDSIGDLRYFRYLNLSGTEIR-----TLPESVNKLYNLHSLLLEDCD--RLK 655 (1448)
Q Consensus 588 ~~~~~~l~~L~~L~L~~n~i~~-----lp~~i~~l~~L~~L~Ls~n~i~-----~lp~~i~~L~~L~~L~L~~n~--~~~ 655 (1448)
-..+..-..|+.|+|++|.|.. |-+.+..-+.|++|+|++|.|. .+-+.+..-+.|+.|+|++|. .++
T Consensus 63 a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig 142 (197)
T 1pgv_A 63 IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLG 142 (197)
T ss_dssp HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCC
T ss_pred HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcC
Confidence 3444466789999999999863 4455555678999999999987 334566666789999998652 122
Q ss_pred -----cccccccccCCCCeeeecCCC
Q 048507 656 -----KLCADMGNLAKLHHLKNSNTK 676 (1448)
Q Consensus 656 -----~lp~~i~~L~~L~~L~l~~~~ 676 (1448)
.+...+..-+.|+.|+++.+.
T Consensus 143 ~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 143 NQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 233456667889999998775
No 409
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=86.79 E-value=0.42 Score=52.74 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.++|.|+|+.|+||||||..++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 410
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=86.78 E-value=0.47 Score=48.42 Aligned_cols=25 Identities=36% Similarity=0.329 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4457889999999999999998864
No 411
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=86.75 E-value=1.4 Score=51.58 Aligned_cols=52 Identities=15% Similarity=0.090 Sum_probs=34.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHh
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRS 269 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 269 (1448)
...++.|.|.+|+||||+|..++.+...+ =..++|++... +..++...++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~~ 247 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIVT 247 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHHH
Confidence 34689999999999999999988643222 13567766543 444555555443
No 412
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=86.68 E-value=0.33 Score=52.17 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..+++|+|+.|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999998873
No 413
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=86.66 E-value=0.17 Score=52.84 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048507 217 VIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 414
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=86.61 E-value=0.81 Score=61.81 Aligned_cols=85 Identities=18% Similarity=0.037 Sum_probs=57.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCC-----CCCCHHHHHHHHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTI-----DDSDLNLLQEELK 288 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 288 (1448)
..+++.|+|.+|+||||||.+++.... ..=..++|++.....+... ++.++.... ...+.+++.+.++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 457999999999999999999876432 2224688998887776542 444443211 2345666666665
Q ss_pred HHhC-CccEEEEEecCCC
Q 048507 289 KKLS-QKKFLLVLDDVWN 305 (1448)
Q Consensus 289 ~~l~-~~~~LlVlDdv~~ 305 (1448)
...+ .+.-+||+|-+..
T Consensus 455 ~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHhcCCCEEEECCHHH
Confidence 5443 4566999999854
No 415
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=86.55 E-value=0.36 Score=50.53 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 416
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=86.55 E-value=0.35 Score=51.16 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
-.+++|+|+.|+|||||.+.+.-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 36899999999999999999885
No 417
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=86.53 E-value=0.21 Score=49.57 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
++++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 418
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=86.50 E-value=0.34 Score=50.27 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048507 217 VIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999976
No 419
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=86.48 E-value=1 Score=52.15 Aligned_cols=85 Identities=18% Similarity=0.173 Sum_probs=49.2
Q ss_pred cEEEEEEcCCCCcHHHHH-HHHHcCcccccccc-eEEEEEeCCcc-CHHHHHHHHHHhccC-------CCCCCCCHHHH-
Q 048507 215 FSVIPIIGMGGLGKTTLA-QLVYNDKRVQDHFD-LKAWTCVSDDF-DVKGLTKTILRSVTK-------QTIDDSDLNLL- 283 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~~- 283 (1448)
-..++|.|..|+|||+|| ..+++.. .-+ .++++-+.+.. .+.++.+++.+.=.. ...+.......
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 250 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence 356799999999999996 4677632 234 34667777654 455666666542110 11111111111
Q ss_pred ----HHHHHHHh--CCccEEEEEecC
Q 048507 284 ----QEELKKKL--SQKKFLLVLDDV 303 (1448)
Q Consensus 284 ----~~~l~~~l--~~~~~LlVlDdv 303 (1448)
.-.+.+++ +++.+||++||+
T Consensus 251 a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 251 APYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 11233333 478999999998
No 420
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=86.42 E-value=0.25 Score=52.33 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=16.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHH-c
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVY-N 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~-~ 237 (1448)
..+++|+|+.|+||||+++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3689999999999999999998 5
No 421
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=86.31 E-value=0.64 Score=52.82 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 197 KKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..++.+.+... .+...+|+|+|.+|+||||++..+..
T Consensus 65 ~~~~~~~~~~~----~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPD----SGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGG----CCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhh----cCCceEEEEECCCCCCHHHHHHHHHH
Confidence 44555555432 23578999999999999999998875
No 422
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=86.23 E-value=0.32 Score=50.23 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+++|+|+.|+|||||++.++-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999875
No 423
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=86.22 E-value=0.34 Score=50.80 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+++|+|+.|+|||||.+.++-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999885
No 424
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=86.18 E-value=0.37 Score=49.57 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048507 217 VIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
+|.|.|++|+||+|.|+.++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577899999999999999986
No 425
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=86.18 E-value=0.86 Score=52.80 Aligned_cols=85 Identities=24% Similarity=0.272 Sum_probs=49.2
Q ss_pred cEEEEEEcCCCCcHHHHH-HHHHcCcccccccc-eEEEEEeCCcc-CHHHHHHHHHHhccCC-------CCCCCCHHHH-
Q 048507 215 FSVIPIIGMGGLGKTTLA-QLVYNDKRVQDHFD-LKAWTCVSDDF-DVKGLTKTILRSVTKQ-------TIDDSDLNLL- 283 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~~- 283 (1448)
-..++|.|..|+|||+|| ..+++.. .-+ .++++-+.+.. .+.++.+++.+.-... ..+.......
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~ 237 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYL 237 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHH
T ss_pred CCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHH
Confidence 456799999999999996 4676632 234 34667777654 4556666665421111 1111111111
Q ss_pred ----HHHHHHHh--CCccEEEEEecC
Q 048507 284 ----QEELKKKL--SQKKFLLVLDDV 303 (1448)
Q Consensus 284 ----~~~l~~~l--~~~~~LlVlDdv 303 (1448)
.-.+.+++ +++.+|+++||+
T Consensus 238 a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 238 APYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 11233333 478999999998
No 426
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=86.10 E-value=0.41 Score=47.63 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
..++++|+|..|+||||++..+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3578999999999999999998863
No 427
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=86.07 E-value=0.3 Score=51.11 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..|.|.|++|+||||+|+.++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999986
No 428
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.07 E-value=0.43 Score=47.86 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
+.|.|.|+.|+||||||.+++..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 67899999999999999999863
No 429
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=86.06 E-value=0.39 Score=52.86 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
++|.|+|+.|+||||+|+.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999986
No 430
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=86.01 E-value=0.23 Score=54.50 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=18.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
+..+|+|.|..|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 431
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=85.98 E-value=0.37 Score=50.61 Aligned_cols=21 Identities=43% Similarity=0.507 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048507 217 VIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 432
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=85.97 E-value=0.43 Score=51.86 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.++|.|.|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999986
No 433
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=85.93 E-value=0.41 Score=50.55 Aligned_cols=25 Identities=28% Similarity=0.114 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
....+|+|.|+.|+||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999999876
No 434
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=85.93 E-value=0.61 Score=53.39 Aligned_cols=88 Identities=13% Similarity=0.237 Sum_probs=49.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccc--cccceEEEEEeCCcc-CHHHHHHHHHHh--ccC-----CCCCCCCHHHH--
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQ--DHFDLKAWTCVSDDF-DVKGLTKTILRS--VTK-----QTIDDSDLNLL-- 283 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~~-~~~~~~~~i~~~--l~~-----~~~~~~~~~~~-- 283 (1448)
..++|.|..|+|||+|+.++++..... ..-..++++-+.+.. .+.++..++.+. +.. ...+.......
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a 231 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIAT 231 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHH
Confidence 457899999999999999998743321 111155666666543 455666665442 110 01111111111
Q ss_pred ---HHHHHHHh---CCccEEEEEecC
Q 048507 284 ---QEELKKKL---SQKKFLLVLDDV 303 (1448)
Q Consensus 284 ---~~~l~~~l---~~~~~LlVlDdv 303 (1448)
.-.+.+++ +++.+|+++||+
T Consensus 232 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 232 PRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 12234444 378999999998
No 435
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=85.90 E-value=0.39 Score=50.83 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
-.+++|+|+.|+|||||++.++.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999975
No 436
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=85.87 E-value=0.37 Score=50.29 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048507 217 VIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999986
No 437
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=85.67 E-value=0.46 Score=53.46 Aligned_cols=24 Identities=38% Similarity=0.394 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
...+++|+|+.|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 457999999999999999999886
No 438
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=85.59 E-value=0.41 Score=50.67 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..|.|.|+.|+||||+|+.++.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999986
No 439
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=85.58 E-value=0.4 Score=51.58 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..+++|+|+.|+|||||.+.++-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999985
No 440
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=85.58 E-value=0.39 Score=51.96 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+++|+|+.|+|||||++.+.-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 6899999999999999999874
No 441
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=85.54 E-value=0.51 Score=51.22 Aligned_cols=24 Identities=29% Similarity=0.202 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..++|.|.|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 457899999999999999999986
No 442
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=85.46 E-value=1.7 Score=45.91 Aligned_cols=103 Identities=16% Similarity=0.096 Sum_probs=52.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCC--------CCCC-----CCHHHHH
Q 048507 218 IPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQ--------TIDD-----SDLNLLQ 284 (1448)
Q Consensus 218 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~--------~~~~-----~~~~~~~ 284 (1448)
+.|+|+.|.|||.+|..++... . ..++++. ....-..+..+.+.+ ++.. .... ...+.+.
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~----~-~~~liv~-P~~~L~~q~~~~~~~-~~~~~v~~~~g~~~~~~~i~v~T~~~l~ 183 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL----S-TPTLIVV-PTLALAEQWKERLGI-FGEEYVGEFSGRIKELKPLTVSTYDSAY 183 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS----C-SCEEEEE-SSHHHHHHHHHHHGG-GCGGGEEEESSSCBCCCSEEEEEHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc----C-CCEEEEe-CCHHHHHHHHHHHHh-CCCCeEEEEeCCCCCcCCEEEEeHHHHH
Confidence 6789999999999998877532 1 2344443 221112233333322 2111 0000 1123333
Q ss_pred HHHHHHhCCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEc
Q 048507 285 EELKKKLSQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTT 331 (1448)
Q Consensus 285 ~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt 331 (1448)
.... .+.++--+||+|.+.......+..+...+. ...++.+|.
T Consensus 184 ~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSA 226 (237)
T 2fz4_A 184 VNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTA 226 (237)
T ss_dssp HTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEE
T ss_pred hhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEec
Confidence 3332 334445699999997765555666555443 233455453
No 443
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=85.34 E-value=0.66 Score=53.07 Aligned_cols=89 Identities=15% Similarity=0.231 Sum_probs=50.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccc--------cccc-eEEEEEeCCcc-CHHHHHHHHHHhc--cC-----CCCCC
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQ--------DHFD-LKAWTCVSDDF-DVKGLTKTILRSV--TK-----QTIDD 277 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l--~~-----~~~~~ 277 (1448)
-..++|.|..|+|||+|+.++++..... ++-+ .++++-+.+.. .+.++..++.+.= .. ...+.
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 3467899999999999999998754331 1111 45666666543 4556666554421 00 01122
Q ss_pred CCHHHH-----HHHHHHHh---CCccEEEEEecC
Q 048507 278 SDLNLL-----QEELKKKL---SQKKFLLVLDDV 303 (1448)
Q Consensus 278 ~~~~~~-----~~~l~~~l---~~~~~LlVlDdv 303 (1448)
...... .-.+.+++ +++.+|+++||+
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 222211 12234444 368999999998
No 444
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=85.33 E-value=0.48 Score=50.38 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
-.+++|+|+.|+|||||.+.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 47899999999999999999875
No 445
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=85.31 E-value=0.43 Score=51.29 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
-.+++|+|+.|+|||||.+.++-
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 36899999999999999999885
No 446
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=85.03 E-value=0.43 Score=51.45 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
-.+++|+|+.|+|||||++.++-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 36899999999999999999985
No 447
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=85.01 E-value=0.55 Score=50.80 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=22.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
....++.+.|.||+||||++..++.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3568899999999999999999885
No 448
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=85.00 E-value=0.38 Score=49.86 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+++|+|+.|+|||||.+.++-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999875
No 449
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=84.95 E-value=0.44 Score=50.55 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+++|+|+.|+|||||.+.++-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999985
No 450
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=84.91 E-value=0.66 Score=53.49 Aligned_cols=89 Identities=13% Similarity=0.165 Sum_probs=51.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccc--cceEEEEEeCCcc-CHHHHHHHHHHhccC-------CCCCCCCHHH--
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDH--FDLKAWTCVSDDF-DVKGLTKTILRSVTK-------QTIDDSDLNL-- 282 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~-- 282 (1448)
-..++|.|..|+|||+|+..++++....+. =+.++++-+.+.. .+.++..++.+.=.. ...+......
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~ 231 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIV 231 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHH
Confidence 356788999999999999999875433211 1345666666543 455666666543111 0111111111
Q ss_pred ---HHHHHHHHh---CCccEEEEEecC
Q 048507 283 ---LQEELKKKL---SQKKFLLVLDDV 303 (1448)
Q Consensus 283 ---~~~~l~~~l---~~~~~LlVlDdv 303 (1448)
..-.+.+++ +++.+|+++||+
T Consensus 232 ~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 232 TPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 112233333 368999999997
No 451
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=84.91 E-value=1.1 Score=60.55 Aligned_cols=84 Identities=19% Similarity=0.053 Sum_probs=59.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCC-----CCCCHHHHHHHH
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTI-----DDSDLNLLQEEL 287 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 287 (1448)
++-++|-|+|+.|+||||||.++... .+..=..++|+.+.+..+... ++.++.... .++..++....+
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a~--~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHH--HHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 45689999999999999999998863 333445689999888887774 666665432 334445555556
Q ss_pred HHHhC-CccEEEEEecC
Q 048507 288 KKKLS-QKKFLLVLDDV 303 (1448)
Q Consensus 288 ~~~l~-~~~~LlVlDdv 303 (1448)
...++ +..-+||+|-|
T Consensus 1502 ~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHHTCCSEEEESCS
T ss_pred HHHHHcCCCCEEEEccH
Confidence 55554 45669999998
No 452
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=84.86 E-value=0.46 Score=52.00 Aligned_cols=24 Identities=21% Similarity=0.312 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
...+++|+|+.|+|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 346899999999999999999875
No 453
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=84.85 E-value=2.2 Score=53.86 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=24.8
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHH
Q 048507 195 TEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVY 236 (1448)
Q Consensus 195 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~ 236 (1448)
...+.+..++... .++.|+|+.|.||||++..+.
T Consensus 97 ~q~~~i~~~l~~~--------~~vii~gpTGSGKTtllp~ll 130 (773)
T 2xau_A 97 AQRDEFLKLYQNN--------QIMVFVGETGSGKTTQIPQFV 130 (773)
T ss_dssp GGHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHhCC--------CeEEEECCCCCCHHHHHHHHH
Confidence 3456666666543 478999999999999665554
No 454
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=84.75 E-value=0.48 Score=50.61 Aligned_cols=22 Identities=32% Similarity=0.600 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+++|+|+.|+|||||.+.++-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 455
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=84.75 E-value=0.45 Score=51.09 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
-.+++|+|+.|+|||||.+.++-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999985
No 456
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=84.74 E-value=0.47 Score=50.75 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..+++|+|+.|+|||||.+.++-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999975
No 457
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=84.67 E-value=0.46 Score=49.96 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+++|+|+.|+|||||.+.++.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999985
No 458
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=84.65 E-value=0.48 Score=55.10 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
....+|.|+|++|+||||+|+.++..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34679999999999999999998863
No 459
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=84.63 E-value=0.51 Score=50.99 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
-.+++|+|+.|+|||||++.++-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999986
No 460
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=84.57 E-value=0.47 Score=50.54 Aligned_cols=22 Identities=45% Similarity=0.735 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+++|+|+.|+|||||++.++.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999975
No 461
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=84.51 E-value=0.52 Score=49.99 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=22.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
....+|+|.|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999999886
No 462
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=84.48 E-value=0.49 Score=50.84 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
-.+++|+|+.|+|||||++.++.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999986
No 463
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=84.41 E-value=0.49 Score=52.48 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999986
No 464
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=84.36 E-value=2.7 Score=43.26 Aligned_cols=52 Identities=21% Similarity=0.190 Sum_probs=32.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHH
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILR 268 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 268 (1448)
..|.|.|+.|+||||+++.++..... ..+..+.+..-.......+..++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQ-LGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-cCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874322 23323344433333234455555554
No 465
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=84.35 E-value=0.93 Score=52.60 Aligned_cols=83 Identities=19% Similarity=0.247 Sum_probs=48.1
Q ss_pred cEEEEEEcCCCCcHHHHH-HHHHcCcccccccc-eEEEEEeCCcc-CHHHHHHHHHHhccC-------CCCCCCCH----
Q 048507 215 FSVIPIIGMGGLGKTTLA-QLVYNDKRVQDHFD-LKAWTCVSDDF-DVKGLTKTILRSVTK-------QTIDDSDL---- 280 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~---- 280 (1448)
-..++|.|..|+|||+|| ..+++.. .-+ .++++-+++.. .+.++.+++.+.=.. ...+....
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 456789999999999996 5677632 234 34667777654 344555554432100 01111111
Q ss_pred -----HHHHHHHHHHhCCccEEEEEecC
Q 048507 281 -----NLLQEELKKKLSQKKFLLVLDDV 303 (1448)
Q Consensus 281 -----~~~~~~l~~~l~~~~~LlVlDdv 303 (1448)
-.+.+.++. +++.+||++||+
T Consensus 239 a~~~a~tiAEyfrd--~G~dVLli~Dsl 264 (507)
T 1fx0_A 239 APYTGAALAEYFMY--RERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 122333443 588999999998
No 466
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=84.35 E-value=0.62 Score=46.08 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999864
No 467
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=84.31 E-value=1.5 Score=51.10 Aligned_cols=49 Identities=12% Similarity=0.100 Sum_probs=35.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccC-HHHHHHHH
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFD-VKGLTKTI 266 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i 266 (1448)
+-..++|.|..|+|||+|+.++++. .+-+.++++-+.+... +.++.+++
T Consensus 226 kGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 226 KGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp TTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred cCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 3457899999999999999998763 2235678888887665 44555554
No 468
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=84.26 E-value=1.3 Score=45.56 Aligned_cols=39 Identities=13% Similarity=0.015 Sum_probs=25.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDD 256 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 256 (1448)
-.|.+.|.||+||||+|..++.... ...++ +.++.+...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~-~~G~~-V~v~d~D~q 45 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQL-RQGVR-VMAGVVETH 45 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH-HTTCC-EEEEECCCT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH-HCCCC-EEEEEeCCC
Confidence 3477899999999999988876332 22233 445555443
No 469
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=84.26 E-value=0.51 Score=51.07 Aligned_cols=23 Identities=39% Similarity=0.561 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
-.+++|+|+.|+|||||++.++.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999975
No 470
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=84.19 E-value=0.53 Score=53.43 Aligned_cols=24 Identities=29% Similarity=0.131 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
...+++|+|+.|+|||||++.++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456999999999999999999986
No 471
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=84.09 E-value=0.51 Score=50.27 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+++|+|+.|+|||||.+.++-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999986
No 472
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=84.06 E-value=0.53 Score=47.99 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999998864
No 473
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=84.02 E-value=0.63 Score=49.98 Aligned_cols=107 Identities=16% Similarity=0.230 Sum_probs=53.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCC-ccCHHHHHHHHHH--hccCCCCCCCCHHHHHHHHHHHh
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSD-DFDVKGLTKTILR--SVTKQTIDDSDLNLLQEELKKKL 291 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~l~~~l 291 (1448)
..+++|+|+.|+||||+++.+..- ....+...+++.-.. .+-.... ..++. .++. +. ..+...+.+.+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl---~~---~~l~~~la~aL 95 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE---DT---KSFADALRAAL 95 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT---TB---SCHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCCc-ceeeeHHHhCC---CH---HHHHHHHHHHH
Confidence 479999999999999999998752 111112333322111 0000000 00000 0100 11 12344566666
Q ss_pred CCccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchh
Q 048507 292 SQKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQE 335 (1448)
Q Consensus 292 ~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 335 (1448)
..++=+|++|...+ ......+.... ..|.-|++||-+..
T Consensus 96 ~~~p~illlDEp~D--~~~~~~~l~~~---~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 96 REDPDVIFVGEMRD--LETVETALRAA---ETGHLVFGTLHTNT 134 (261)
T ss_dssp HHCCSEEEESCCCS--HHHHHHHHHHH---HTTCEEEEEECCSS
T ss_pred hhCCCEEEeCCCCC--HHHHHHHHHHH---ccCCEEEEEeCcch
Confidence 55677889999853 23333322221 23666888887654
No 474
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=83.90 E-value=0.5 Score=47.79 Aligned_cols=22 Identities=41% Similarity=0.527 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048507 217 VIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
-|+|+|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999863
No 475
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=83.79 E-value=0.55 Score=50.72 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..+++|+|+.|+|||||.+.++-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 36899999999999999999875
No 476
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=83.72 E-value=1.1 Score=46.40 Aligned_cols=25 Identities=36% Similarity=0.478 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
....|.|.|+.|+||||+++.+.+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999874
No 477
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=83.72 E-value=0.91 Score=50.45 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=28.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCc
Q 048507 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDD 256 (1448)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 256 (1448)
...++|+|+|-||+||||+|..++......+ ..++-|+....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G--~~VlliD~D~~ 80 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDPK 80 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESSS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 3568899999999999999988876322121 24666666543
No 478
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=83.65 E-value=2.2 Score=49.99 Aligned_cols=59 Identities=14% Similarity=0.187 Sum_probs=39.2
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCc-cCHHHHHHHH
Q 048507 199 DVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDD-FDVKGLTKTI 266 (1448)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i 266 (1448)
++++.|..- .+-..++|.|..|+|||+|+.++++.. +-+.++++-+.+. ..+.++++++
T Consensus 221 rvID~l~Pi-----grGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 221 RVIDTFFPV-----TKGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHHSCC-----BTTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhhccCCc-----cCCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 455666432 234678999999999999999998732 2356777777765 3344444443
No 479
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=83.56 E-value=0.54 Score=51.05 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
-.+++|+|+.|+|||||.+.++-
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999985
No 480
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=83.54 E-value=0.54 Score=50.26 Aligned_cols=22 Identities=32% Similarity=0.718 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+++|+|+.|+|||||.+.++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999985
No 481
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=83.42 E-value=0.68 Score=45.37 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
+.|+|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998864
No 482
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=83.38 E-value=1.2 Score=51.69 Aligned_cols=89 Identities=21% Similarity=0.241 Sum_probs=49.8
Q ss_pred cEEEEEEcCCCCcHHHHH-HHHHcCccc----ccccc-eEEEEEeCCcc-CHHHHHHHHHHhccC-------CCCCCCCH
Q 048507 215 FSVIPIIGMGGLGKTTLA-QLVYNDKRV----QDHFD-LKAWTCVSDDF-DVKGLTKTILRSVTK-------QTIDDSDL 280 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa-~~v~~~~~~----~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~ 280 (1448)
-..++|.|..|+|||+|| ..+.+.... ..+-+ .++++-+.+.. .+.++.+++.+.=.. ...+....
T Consensus 162 GQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~ 241 (510)
T 2ck3_A 162 GQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAP 241 (510)
T ss_dssp TCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHH
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHH
Confidence 356789999999999995 466664321 01233 46677777654 455666666542110 11111111
Q ss_pred HHH-----HHHHHHHh--CCccEEEEEecC
Q 048507 281 NLL-----QEELKKKL--SQKKFLLVLDDV 303 (1448)
Q Consensus 281 ~~~-----~~~l~~~l--~~~~~LlVlDdv 303 (1448)
... .-.+.+++ +++.+||++||+
T Consensus 242 ~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 242 LQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 111 11233333 478999999998
No 483
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=83.24 E-value=1 Score=47.79 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHc
Q 048507 198 KDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 198 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..+..++... .+....+.++|++|+|||.+|.++++
T Consensus 91 ~~l~~~l~~~----~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 91 SVFLGWATKK----FGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHTTC----STTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCC----CCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 3455555331 13456799999999999999999987
No 484
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=83.19 E-value=0.73 Score=53.44 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
..++|+|+|.+|+||||+|..++..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999988763
No 485
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=83.19 E-value=0.52 Score=51.54 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
-.++.|+|++|+||||||..++.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
No 486
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=82.90 E-value=1.6 Score=53.60 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
+++.|.|.+|.||||++..+..
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~ 186 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLA 186 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHH
Confidence 5889999999999999887764
No 487
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=82.87 E-value=0.66 Score=49.38 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
...|+|.|..|+||||+++.++.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 488
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=82.79 E-value=0.66 Score=47.61 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999864
No 489
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=82.54 E-value=0.94 Score=45.84 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999864
No 490
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=82.03 E-value=1.2 Score=48.38 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=27.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDD 256 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 256 (1448)
++|+|.|-||+||||+|..++.... ..=..++-++....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la--~~G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH--AMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH--TTTCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH--HCCCcEEEEcCCCC
Confidence 5788899999999999988876322 12124666666543
No 491
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=82.01 E-value=1.4 Score=46.36 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
...|.|.|+.|+||||+++.+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 492
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=81.99 E-value=0.68 Score=47.27 Aligned_cols=110 Identities=12% Similarity=-0.022 Sum_probs=52.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHhccCCCC--CCCCHHHHHHHHHHHhC
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSDDFDVKGLTKTILRSVTKQTI--DDSDLNLLQEELKKKLS 292 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~ 292 (1448)
..+..++|.-|.||||.|...+.... .+-..++.+.... +.+.....++..++.... ...+.+ .+.+.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~--~~g~kVli~k~~~--d~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~~ 99 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQ--FAKQHAIVFKPCI--DNRYSEEDVVSHNGLKVKAVPVSASK----DIFKHIT 99 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH--HTTCCEEEEECC-------------------CCEEECSSGG----GGGGGCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEEecc--CCcchHHHHHhhcCCeeEEeecCCHH----HHHHHHh
Confidence 47888999999999999988776332 2222333343221 112222234444432211 111111 1222223
Q ss_pred CccEEEEEecCCCCChhhHhhhcccccCCCCCcEEEEEcCchh
Q 048507 293 QKKFLLVLDDVWNENYNDWVRLSRPFEAGAPGSKIIVTTRNQE 335 (1448)
Q Consensus 293 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 335 (1448)
++--+|++|.+..-+.+..+.+ ..+.+ .|..||+|-++.+
T Consensus 100 ~~~dvViIDEaQF~~~~~V~~l-~~l~~--~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEVV-QVLAN--RGYRVIVAGLDQD 139 (214)
T ss_dssp SSCCEEEECCGGGSCTTHHHHH-HHHHH--TTCEEEEEECSBC
T ss_pred cCCCEEEEECcccCCHHHHHHH-HHHhh--CCCEEEEEecccc
Confidence 3334999999865433334333 33222 3778999998754
No 493
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=81.85 E-value=0.69 Score=49.63 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+++|+|+.|+|||||.+.++-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999985
No 494
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=81.84 E-value=0.57 Score=51.46 Aligned_cols=23 Identities=26% Similarity=0.610 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
-.+++|+|+.|+|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 46899999999999999999875
No 495
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=81.65 E-value=0.72 Score=49.84 Aligned_cols=21 Identities=38% Similarity=0.749 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048507 217 VIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999885
No 496
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=81.52 E-value=1.1 Score=44.78 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 214 GFSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
+...|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999998764
No 497
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=81.52 E-value=2.8 Score=48.39 Aligned_cols=83 Identities=18% Similarity=0.216 Sum_probs=49.0
Q ss_pred cEEEEEEcCCCCcHHHHH-HHHHcCcccccccc-eEEEEEeCCcc-CHHHHHHHHHHhccCC-------CCCCCCHH---
Q 048507 215 FSVIPIIGMGGLGKTTLA-QLVYNDKRVQDHFD-LKAWTCVSDDF-DVKGLTKTILRSVTKQ-------TIDDSDLN--- 281 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~--- 281 (1448)
-..++|.|..|+|||+|| ..+.+. ..-+ .++++-+++.. .+.++.+++.+.=... ..+.....
T Consensus 162 GQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~ 237 (513)
T 3oaa_A 162 GQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYL 237 (513)
T ss_dssp TCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHH
T ss_pred CCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHH
Confidence 356789999999999997 566663 2223 35677777764 4456666654431111 01111111
Q ss_pred ------HHHHHHHHHhCCccEEEEEecC
Q 048507 282 ------LLQEELKKKLSQKKFLLVLDDV 303 (1448)
Q Consensus 282 ------~~~~~l~~~l~~~~~LlVlDdv 303 (1448)
.+.+.++. +++.+||++||+
T Consensus 238 a~~~a~tiAEyfrd--~G~dVLli~Dsl 263 (513)
T 3oaa_A 238 APYAGCAMGEYFRD--RGEDALIIYDDL 263 (513)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHh--cCCCEEEEecCh
Confidence 12233332 588999999998
No 498
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=81.38 E-value=1.1 Score=46.63 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=18.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1448)
...|.|.|+.|+||||+++.+++.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 499
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=81.36 E-value=0.74 Score=50.23 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 048507 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
..+++|+|+.|+|||||.+.++.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 36899999999999999999975
No 500
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=81.24 E-value=0.76 Score=51.96 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 048507 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1448)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1448)
.+|+|.|+.|+||||||..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5899999999999999999986
Done!