BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048509
(168 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224077862|ref|XP_002305441.1| predicted protein [Populus trichocarpa]
gi|222848405|gb|EEE85952.1| predicted protein [Populus trichocarpa]
Length = 518
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/204 (49%), Positives = 123/204 (60%), Gaps = 53/204 (25%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------- 41
IC SKLKP+YL+ +L++LGGEK IVF SSV ++
Sbjct: 317 ICVSKLKPLYLVAVLQHLGGEKCIVFTSSVESTHRLCTLLNFFGDLKVKIKEYSGLQRQS 376
Query: 42 --PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQ 90
KTLKAFR +G +QVLV SDAMT GMD+E AY+KTY+HRAG ARAGQ
Sbjct: 377 VRSKTLKAFR-EGEIQVLVSSDAMTRGMDIEGVRNIINYDMPAYVKTYVHRAGRTARAGQ 435
Query: 91 NGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS----- 145
G C TLL E VKRFKKLLQ+AD+DSCP++SIPSSS++SL P Y S
Sbjct: 436 TGRCITLLRTHE--------VKRFKKLLQKADNDSCPIYSIPSSSVKSLHPFYLSALEKL 487
Query: 146 -EYVESQANRKRKIGFKLSRMVKG 168
E V+S+ +RK K+G K SR+ KG
Sbjct: 488 KETVQSETSRKGKVGIKFSRVSKG 511
>gi|225443938|ref|XP_002279094.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 1 [Vitis vinifera]
gi|297740757|emb|CBI30939.3| unnamed protein product [Vitis vinifera]
Length = 516
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 101/199 (50%), Positives = 117/199 (58%), Gaps = 53/199 (26%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------- 41
ICESKLKP+YL+ LLR+LGGEK IVF SSV ++
Sbjct: 314 ICESKLKPLYLVALLRDLGGEKCIVFTSSVESAHRLCTLLNFFGDLQIKIGEYSGLQHQR 373
Query: 42 --PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQ 90
KTL+ FRG G +QVL+ SD MT GMDVE +IKTYIHRAG ARAGQ
Sbjct: 374 VRSKTLEEFRG-GKIQVLISSDGMTRGMDVEGVRNVINYDVPKFIKTYIHRAGRTARAGQ 432
Query: 91 NGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS----- 145
G CFTLL KDED KRFK+LLQ+AD DSCPVHS+ S+SIE+L +Y S
Sbjct: 433 TGRCFTLLRKDED--------KRFKQLLQKADSDSCPVHSVASNSIEALHSVYVSALEKL 484
Query: 146 -EYVESQANRKRKIGFKLS 163
E V S+ RKRKI FK S
Sbjct: 485 KETVVSETTRKRKINFKSS 503
>gi|449433605|ref|XP_004134588.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 1-like [Cucumis
sativus]
gi|449490565|ref|XP_004158642.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 1-like [Cucumis
sativus]
Length = 517
Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/194 (52%), Positives = 118/194 (60%), Gaps = 53/194 (27%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------- 41
ICESKLKP+YL+ LL++LG EK IVF SSV ++
Sbjct: 314 ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCSLLNFFEDLELKIKEYSGLQRQS 373
Query: 42 --PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQ 90
KTL AFRG G +QVLV SDAMT GMDVE A+IKTYIHRAG ARAGQ
Sbjct: 374 LRSKTLNAFRG-GEIQVLVSSDAMTRGMDVEGVKNVINYDMPAFIKTYIHRAGRTARAGQ 432
Query: 91 NGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS----- 145
+G CFTLL KDE VKRFKKLLQ+AD+DSCPVH++PSSSIE L+P Y S
Sbjct: 433 SGRCFTLLRKDE--------VKRFKKLLQKADNDSCPVHNLPSSSIEFLQPTYVSALEKL 484
Query: 146 -EYVESQANRKRKI 158
E VES+ +RK I
Sbjct: 485 KEKVESETSRKSTI 498
>gi|255584180|ref|XP_002532829.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223527420|gb|EEF29559.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 469
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 100/166 (60%), Gaps = 47/166 (28%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------- 41
ICE KLKP+YL+ LL+NL GEK IVFASSV ++
Sbjct: 290 ICEPKLKPLYLVALLQNLVGEKCIVFASSVESTHRLCTLLKFFGDLKVKIKEYSGLQHQS 349
Query: 42 --PKTLKAFRGKGHMQVLVCSDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQ 90
KTLKAFR +G +QVLV SDAMT GMDVE + AYIKTYIHRAG ARAGQ
Sbjct: 350 VRSKTLKAFR-EGKIQVLVSSDAMTRGMDVEGVRNVINYDKPAYIKTYIHRAGRTARAGQ 408
Query: 91 NGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSI 136
G CFTLL K+E V+ F+KLLQ+AD+DS PV+S+P ++
Sbjct: 409 VGRCFTLLHKEE--------VRHFRKLLQKADNDSFPVYSLPPVTL 446
>gi|5281020|emb|CAB45993.1| ATP-dependent RNA helicase like protein [Arabidopsis thaliana]
gi|7268333|emb|CAB78627.1| ATP-dependent RNA helicase like protein [Arabidopsis thaliana]
Length = 474
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 105/197 (53%), Gaps = 53/197 (26%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------- 41
ICE+ +KP+YL+ LL++ GEK I+F SSV +
Sbjct: 268 ICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDPKIKAKEYSGGLNQS 327
Query: 42 --PKTLKAFRGKGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQ 90
K LKAFR KG +QVLV SDA+T GMDV + + KT+IHRAG ARAGQ
Sbjct: 328 LRSKELKAFR-KGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRTARAGQ 386
Query: 91 NGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYK------ 144
G CFTLL E V+RF KLL++ DSCP++ IP +S++S+R Y
Sbjct: 387 AGRCFTLLSNHE--------VRRFSKLLEKVGSDSCPIYPIPPTSLDSIRATYTPALEKL 438
Query: 145 SEYVESQANRKRKIGFK 161
E VES+A +K + F+
Sbjct: 439 KELVESEAPKKGRQAFR 455
>gi|240255886|ref|NP_193320.6| RNA helicase 1 [Arabidopsis thaliana]
gi|334302879|sp|Q7FGZ2.3|RH1_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 1
gi|332658259|gb|AEE83659.1| RNA helicase 1 [Arabidopsis thaliana]
Length = 522
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 105/197 (53%), Gaps = 53/197 (26%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------- 41
ICE+ +KP+YL+ LL++ GEK I+F SSV +
Sbjct: 316 ICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDPKIKAKEYSGGLNQS 375
Query: 42 --PKTLKAFRGKGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQ 90
K LKAFR KG +QVLV SDA+T GMDV + + KT+IHRAG ARAGQ
Sbjct: 376 LRSKELKAFR-KGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRTARAGQ 434
Query: 91 NGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYK------ 144
G CFTLL E V+RF KLL++ DSCP++ IP +S++S+R Y
Sbjct: 435 AGRCFTLLSNHE--------VRRFSKLLEKVGSDSCPIYPIPPTSLDSIRATYTPALEKL 486
Query: 145 SEYVESQANRKRKIGFK 161
E VES+A +K + F+
Sbjct: 487 KELVESEAPKKGRQAFR 503
>gi|297804642|ref|XP_002870205.1| hypothetical protein ARALYDRAFT_493299 [Arabidopsis lyrata subsp.
lyrata]
gi|297316041|gb|EFH46464.1| hypothetical protein ARALYDRAFT_493299 [Arabidopsis lyrata subsp.
lyrata]
Length = 522
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 105/197 (53%), Gaps = 53/197 (26%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------- 41
ICE+ +KP+YL+ LL++ GEK I+F SSV +
Sbjct: 316 ICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDPKIKAKEYSGGLNQS 375
Query: 42 --PKTLKAFRGKGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQ 90
K LKAFR KG +QVLV SDA+T GMDV + + KT+IHRAG ARAGQ
Sbjct: 376 VRSKELKAFR-KGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRTARAGQ 434
Query: 91 NGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYK------ 144
G CFTLL E V+RF KLL++ DSCP++ IP +S++S+R Y
Sbjct: 435 AGRCFTLLSNHE--------VRRFSKLLKKVGSDSCPIYPIPPTSLDSIRATYTPALEKL 486
Query: 145 SEYVESQANRKRKIGFK 161
E VES+A +K + F+
Sbjct: 487 KELVESEAPKKGRQAFR 503
>gi|3445416|emb|CAA72041.1| DEAD box-like RNA helicase [Arabidopsis thaliana]
Length = 450
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 103/197 (52%), Gaps = 53/197 (26%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------- 41
ICE+ +KP+YL LL++ GEK I+F SS +
Sbjct: 244 ICETGMKPVYLGALLKSWEGEKCIIFTSSGETTRRLCKLLNFFGDPKIKAKEYSGGLNQS 303
Query: 42 --PKTLKAFRGKGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQ 90
K LKAFR KG +QVLV SDA+T GMDV + + KT+IHRAG ARAGQ
Sbjct: 304 LRSKELKAFR-KGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRTARAGQ 362
Query: 91 NGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYK------ 144
G CFTLL E V+RF KLL++ DSCP++ IP +S++S+R Y
Sbjct: 363 AGRCFTLLSNHE--------VRRFSKLLKKVGSDSCPIYPIPPTSLDSIRATYTPALEKL 414
Query: 145 SEYVESQANRKRKIGFK 161
E VES+A +K + F+
Sbjct: 415 KELVESEAPKKGRQAFR 431
>gi|356526389|ref|XP_003531800.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
1-like [Glycine max]
Length = 617
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 95/175 (54%), Gaps = 47/175 (26%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------- 41
ICE K+KP+YL+ LL++LG EK IVF SV ++
Sbjct: 427 ICERKVKPLYLVALLKSLGEEKCIVFTRSVESTHHLCKLLNCFGDLKIGIKEFSGLKHQR 486
Query: 42 --PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQ 90
KT+ FR +G QVLV SDAMT GMDVE Y KTY+HRAG ARAGQ
Sbjct: 487 VRSKTVGEFR-RGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYTKTYVHRAGRTARAGQ 545
Query: 91 NGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS 145
G CFTL+ KDE V RFKKL+++A+ C +++PSS IE+L Y+S
Sbjct: 546 TGRCFTLMSKDE--------VXRFKKLMKKAEASDCLEYTVPSSLIEALHSTYQS 592
>gi|125541460|gb|EAY87855.1| hypothetical protein OsI_09277 [Oryza sativa Indica Group]
Length = 499
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 107/197 (54%), Gaps = 53/197 (26%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------- 41
+C+S LKP+ LI LL+ L GEK +VF SSV +S
Sbjct: 299 VCKSNLKPLSLIVLLQELRGEKCLVFTSSVESSHRLSTLLEFFEDLPFKFSEYSRLQRES 358
Query: 42 --PKTLKAFRGKGHMQVLVCSDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQ 90
KTL AF+ +G + VL+ +D M G+ ++ Y+KTYIHRAG ARAG+
Sbjct: 359 TRRKTLDAFK-EGKIDVLIGTDRMARGIHIDGLRYVINYDMPPYVKTYIHRAGRTARAGE 417
Query: 91 NGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS----- 145
+G CFT L K E VK F K+L++AD+ SC +HS+P S+E+LRP++ S
Sbjct: 418 SGSCFTFLRKHE--------VKAFDKMLKKADNSSCSLHSLPEESVETLRPVFSSALKKL 469
Query: 146 -EYVESQANRKRKIGFK 161
E +ES+A +K K+G K
Sbjct: 470 EESLESEATKKSKLGDK 486
>gi|357491905|ref|XP_003616240.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355517575|gb|AES99198.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 497
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 96/175 (54%), Gaps = 47/175 (26%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------- 41
ICE K+KP+YLI LL++LG EK +VF SV ++
Sbjct: 314 ICEKKVKPLYLIALLKSLGEEKCLVFTKSVDSTHRLCQLLNCFEDLRIDIKEYSSLQHQR 373
Query: 42 --PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQ 90
KTL FR KG QVL+ SDA+T GMDVE +IKT++HRAG ARAGQ
Sbjct: 374 VRSKTLNEFR-KGVFQVLLSSDALTRGMDVEGVRNVINYDVPKFIKTHVHRAGRTARAGQ 432
Query: 91 NGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS 145
G CFTL+ +DE V+RFKKL+ +A+ SC H +PSS IE+L Y+S
Sbjct: 433 TGRCFTLMSEDE--------VRRFKKLIGKAEGGSCLDHIVPSSQIEALNTTYES 479
>gi|115449213|ref|NP_001048386.1| Os02g0795900 [Oryza sativa Japonica Group]
gi|122170850|sp|Q0DWT8.1|RH1_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 1
gi|113537917|dbj|BAF10300.1| Os02g0795900 [Oryza sativa Japonica Group]
gi|215740532|dbj|BAG97188.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 521
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 106/197 (53%), Gaps = 53/197 (26%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------- 41
+C+S LKP+ LI LL+ L GEK +VF SSV +S
Sbjct: 321 VCKSNLKPLSLIVLLQELRGEKCLVFTSSVESSHRLSTLLEFFEDLPFKFSEYSRLQRES 380
Query: 42 --PKTLKAFRGKGHMQVLVCSDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQ 90
KTL AF+ +G + VL+ +D M G+ ++ Y+KTYIHRAG ARAG+
Sbjct: 381 TRRKTLDAFK-EGKIDVLIGTDRMARGIHIDGLRYVINYDMPPYVKTYIHRAGRTARAGE 439
Query: 91 NGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS----- 145
+G CFT L K E VK F K+L++AD+ SC +HS+P S+E+LRP++ S
Sbjct: 440 SGSCFTFLRKHE--------VKAFDKMLKKADNSSCSLHSLPEESVETLRPVFSSALKKL 491
Query: 146 -EYVESQANRKRKIGFK 161
E +ES+A +K K G K
Sbjct: 492 EESLESEATKKSKSGDK 508
>gi|125584003|gb|EAZ24934.1| hypothetical protein OsJ_08714 [Oryza sativa Japonica Group]
Length = 499
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 106/197 (53%), Gaps = 53/197 (26%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------- 41
+C+S LKP+ LI LL+ L GEK +VF SSV +S
Sbjct: 299 VCKSNLKPLSLIVLLQELRGEKCLVFTSSVESSHRLSTLLEFFEDLPFKFSEYSRLQRES 358
Query: 42 --PKTLKAFRGKGHMQVLVCSDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQ 90
KTL AF+ +G + VL+ +D M G+ ++ Y+KTYIHRAG ARAG+
Sbjct: 359 TRRKTLDAFK-EGKIDVLIGTDRMARGIHIDGLRYVINYDMPPYVKTYIHRAGRTARAGE 417
Query: 91 NGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS----- 145
+G CFT L K E VK F K+L++AD+ SC +HS+P S+E+LRP++ S
Sbjct: 418 SGSCFTFLRKHE--------VKAFDKMLKKADNSSCSLHSLPEESVETLRPVFSSALKKL 469
Query: 146 -EYVESQANRKRKIGFK 161
E +ES+A +K K G K
Sbjct: 470 EESLESEATKKSKSGDK 486
>gi|47497023|dbj|BAD19076.1| putative DEAD box-like RNA helicase [Oryza sativa Japonica Group]
gi|47497232|dbj|BAD19277.1| putative DEAD box-like RNA helicase [Oryza sativa Japonica Group]
Length = 517
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 106/197 (53%), Gaps = 53/197 (26%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------- 41
+C+S LKP+ LI LL+ L GEK +VF SSV +S
Sbjct: 317 VCKSNLKPLSLIVLLQELRGEKCLVFTSSVESSHRLSTLLEFFEDLPFKFSEYSRLQRES 376
Query: 42 --PKTLKAFRGKGHMQVLVCSDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQ 90
KTL AF+ +G + VL+ +D M G+ ++ Y+KTYIHRAG ARAG+
Sbjct: 377 TRRKTLDAFK-EGKIDVLIGTDRMARGIHIDGLRYVINYDMPPYVKTYIHRAGRTARAGE 435
Query: 91 NGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS----- 145
+G CFT L K E VK F K+L++AD+ SC +HS+P S+E+LRP++ S
Sbjct: 436 SGSCFTFLRKHE--------VKAFDKMLKKADNSSCSLHSLPEESVETLRPVFSSALKKL 487
Query: 146 -EYVESQANRKRKIGFK 161
E +ES+A +K K G K
Sbjct: 488 EESLESEATKKSKSGDK 504
>gi|242066828|ref|XP_002454703.1| hypothetical protein SORBIDRAFT_04g035895 [Sorghum bicolor]
gi|241934534|gb|EES07679.1| hypothetical protein SORBIDRAFT_04g035895 [Sorghum bicolor]
Length = 519
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 106/198 (53%), Gaps = 53/198 (26%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANSP-------------------------- 42
IC+S LKP+ LI LL+ L G K +VF SSV +S
Sbjct: 320 ICKSNLKPLSLIVLLQELQGNKCLVFTSSVESSHRLSTLLCFFENLPFKFSEYSRLQRES 379
Query: 43 ---KTLKAFRGKGHMQVLVCSDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQ 90
KTL+AF+ +G + VL+ +D M G+ ++ Y+KTYIHRAG ARAG+
Sbjct: 380 TRRKTLEAFK-EGKIDVLIGTDRMARGIHIDGLRYVINYDMPPYVKTYIHRAGRTARAGE 438
Query: 91 NGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS----- 145
+G CFT L K E VK F K+L++AD+ SC +HS+P SIE+LRP + S
Sbjct: 439 SGSCFTFLRKHE--------VKTFDKMLKKADNASCSLHSLPEESIETLRPTFSSALRKL 490
Query: 146 -EYVESQANRKRKIGFKL 162
E +ES+A +K +G K+
Sbjct: 491 EESLESEAAKKSNLGDKM 508
>gi|357137417|ref|XP_003570297.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 1-like [Brachypodium
distachyon]
Length = 522
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 105/203 (51%), Gaps = 53/203 (26%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------- 41
IC + LKP+ LI LL+ L GEK +VF SSV +S
Sbjct: 322 ICTTNLKPLCLIVLLQELHGEKCLVFTSSVESSHRLSTLLGFFEDLPFKFSEFSRLQRES 381
Query: 42 --PKTLKAFRGKGHMQVLVCSDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQ 90
KTL F+ +G + VL+ +D M G+ ++ Y+KTYIHRAG ARAG+
Sbjct: 382 TRRKTLADFK-EGKIDVLIGTDIMARGIHIDGLKYVINYDMPPYVKTYIHRAGRTARAGE 440
Query: 91 NGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS----- 145
+G CFTLL K E VK F K+L++AD SC + S+P SIE+ RP++ S
Sbjct: 441 SGSCFTLLRKHE--------VKTFDKMLKKADDSSCSLRSLPDESIETFRPVFSSALKKL 492
Query: 146 -EYVESQANRKRKIGFKLSRMVK 167
E +E +A++K K G K+ + K
Sbjct: 493 EESLEPEASKKSKSGDKIPKSSK 515
>gi|413939310|gb|AFW73861.1| putative DEAD-box ATP-dependent RNA helicase family protein isoform
1 [Zea mays]
gi|413939311|gb|AFW73862.1| putative DEAD-box ATP-dependent RNA helicase family protein isoform
2 [Zea mays]
Length = 523
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 102/197 (51%), Gaps = 53/197 (26%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANSP-------------------------- 42
IC+S LKP+ LI LL+ L G K +VF SSV +S
Sbjct: 320 ICKSNLKPLSLIVLLQELQGNKCLVFTSSVESSHRLSTLLRFFENLPFKFSEYSRLQRES 379
Query: 43 ---KTLKAFRGKGHMQVLVCSDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQ 90
KTL+AF+ +G + VL+ +D M G+ ++ Y+KTYIHRAG ARAG+
Sbjct: 380 TRRKTLEAFK-EGKIDVLIGTDRMARGIHIDGLRYVINYDMPPYVKTYIHRAGRTARAGE 438
Query: 91 NGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEY--- 147
+G CFT L K E VK F K+L++AD+ C +HS+P SIE+LRP +
Sbjct: 439 SGSCFTFLRKHE--------VKTFDKMLKKADNAGCNLHSLPEESIETLRPAFSGALRKL 490
Query: 148 ---VESQANRKRKIGFK 161
+ES+A +K +G K
Sbjct: 491 EGALESEAVKKYDLGDK 507
>gi|356554249|ref|XP_003545461.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
1-like [Glycine max]
Length = 492
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 95/194 (48%), Gaps = 50/194 (25%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKT-------------LKAFRGKGH-- 53
ICE K+KP+YL+ LL++LG EK IVF V ++ +K F G H
Sbjct: 302 ICERKVKPLYLVALLKSLGEEKCIVFTRFVESTHHLCKLLNFFGDLKIGIKEFSGLKHQQ 361
Query: 54 -------------MQVLVCSDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQN 91
QVLV SDAMT MDVE Y KTY+HR G ARAGQ
Sbjct: 362 VRSKTVGEFQRREFQVLVSSDAMTRVMDVEGLRNVINYDVPKYTKTYVHRPGRTARAGQT 421
Query: 92 GHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVE-- 149
G CFTL+ KDE V F+KL+++A+ C H++PSS IE+L Y S +
Sbjct: 422 GCCFTLMSKDE--------VGGFEKLMKKAEASDCLQHTVPSSLIEALHSTYSSALTKLK 473
Query: 150 ---SQANRKRKIGF 160
+A RK +I
Sbjct: 474 EKILEARRKPRISL 487
>gi|302794133|ref|XP_002978831.1| hypothetical protein SELMODRAFT_109199 [Selaginella moellendorffii]
gi|300153640|gb|EFJ20278.1| hypothetical protein SELMODRAFT_109199 [Selaginella moellendorffii]
Length = 513
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 89/175 (50%), Gaps = 47/175 (26%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------- 41
IC+++ KP+ L+ LL +LG ++ ++F SSV+N+
Sbjct: 308 ICKAQQKPLKLVTLLHSLGDQRTVIFTSSVSNTHRLSTFLACFEDLPFRAVEYSSFQHQL 367
Query: 42 --PKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQ 90
K L AFR G QVLV SDAM GMDVE +I +TY+HR G ARAG+
Sbjct: 368 ARSKALAAFRA-GEAQVLVASDAMARGMDVEGVTHIINYDMPPFARTYVHRVGRTARAGR 426
Query: 91 NGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS 145
+G CFTLL K+E V+ FK +L + + SC + + S S + LRP Y +
Sbjct: 427 SGSCFTLLRKEE--------VRYFKSILAKVQNSSCKTYKVSSESTKELRPRYWT 473
>gi|302787757|ref|XP_002975648.1| hypothetical protein SELMODRAFT_174931 [Selaginella moellendorffii]
gi|300156649|gb|EFJ23277.1| hypothetical protein SELMODRAFT_174931 [Selaginella moellendorffii]
Length = 513
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 89/175 (50%), Gaps = 47/175 (26%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------- 41
IC+++ KP+ L+ LL +LG ++ ++F SSV+N+
Sbjct: 308 ICKAQQKPLKLVTLLHSLGDQRTVIFTSSVSNTHRLSTFLACFEDLPFRAVEYSSFQHQL 367
Query: 42 --PKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQ 90
K L AFR G QVLV SDAM GMDVE +I +TY+HR G ARAG+
Sbjct: 368 ARSKALAAFRA-GEAQVLVASDAMARGMDVEGVTHIINYDMPPFARTYVHRVGRTARAGR 426
Query: 91 NGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS 145
+G CFTLL K+E V+ FK +L + + SC + + S S + LRP Y +
Sbjct: 427 SGSCFTLLRKEE--------VRYFKSILAKVQNSSCKTYKVSSESTKELRPRYWT 473
>gi|384254028|gb|EIE27502.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coccomyxa subellipsoidea C-169]
Length = 562
Score = 81.6 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 55/171 (32%), Positives = 79/171 (46%), Gaps = 47/171 (27%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANSPK------------------------- 43
+C KP+ + LLR L E ++F +SV + +
Sbjct: 384 VCAGADKPVLAVALLRQLANEPTLIFTASVEATRRLFVLLHAVPSLRESVLEFSSLNSGP 443
Query: 44 ----TLKAFRGKGHMQVLVCSDAMTSGMDVERAA---------YIKTYIHRAGPRARAGQ 90
TL AFRG G ++LV SD MT GMDV A Y KTY+HRAG AR G+
Sbjct: 444 ERAATLAAFRG-GDARILVASDGMTRGMDVPSVANVVNYDAPIYAKTYVHRAGRTARGGR 502
Query: 91 NGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRP 141
G FTLL +E V+ FK LL++ D+ +++P + +++ RP
Sbjct: 503 EGRVFTLLRTEE--------VRHFKGLLRKVDNAFVKDYALPKADVDAARP 545
>gi|302839717|ref|XP_002951415.1| hypothetical protein VOLCADRAFT_61333 [Volvox carteri f.
nagariensis]
gi|300263390|gb|EFJ47591.1| hypothetical protein VOLCADRAFT_61333 [Volvox carteri f.
nagariensis]
Length = 654
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 57/171 (33%), Positives = 84/171 (49%), Gaps = 47/171 (27%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANSPK------------------------- 43
+C + KP+ L+ LL+ G+ IVF SS+ + K
Sbjct: 348 MCSAARKPLVLLALLQEWSGQSTIVFTSSLEMTHKLFLMLSAVQDLPDEVVEYSSLVPVR 407
Query: 44 ----TLKAFRGKGHMQVLVCSDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQ 90
L+ FR G +++LV SDAMT GMDV+ Y KTY+HRAG ARAG+
Sbjct: 408 ARAAALERFR-TGSVELLVASDAMTRGMDVDCVQNVINYDAPVYAKTYVHRAGRTARAGK 466
Query: 91 NGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRP 141
G TLL +DED ++ FK ++ +AD++ + +PS +E+LRP
Sbjct: 467 PGRVITLL-RDED-------MRHFKAMIHKADNNFVREYKLPSERVEALRP 509
>gi|307104244|gb|EFN52499.1| hypothetical protein CHLNCDRAFT_138879 [Chlorella variabilis]
Length = 576
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 51/123 (41%), Positives = 73/123 (59%), Gaps = 20/123 (16%)
Query: 29 EKFIVFASSVANSPKT--LKAFRGKGHMQVLVCSDAMTSGMDVERAA---------YIKT 77
++ + F+S VA + + L+AFR G +VLVCSDAMT GMDV A Y+KT
Sbjct: 372 DRAVEFSSLVAPAERAARLEAFR-SGKAKVLVCSDAMTRGMDVAGVANVVNYDAPVYVKT 430
Query: 78 YIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIE 137
Y+HRAG ARAG+ G FTLL + ED V+ FK +L++AD+ H + ++E
Sbjct: 431 YVHRAGRTARAGRAGRVFTLL-RHED-------VRHFKGMLRKADNTFVRAHRLAKGALE 482
Query: 138 SLR 140
++R
Sbjct: 483 AVR 485
>gi|301117032|ref|XP_002906244.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262107593|gb|EEY65645.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 564
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 45/171 (26%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANS-------------PKTLKAFRGK----- 51
C++ KP+ L+ LL G IVF +SV ++ P+ ++ F
Sbjct: 327 CDTGSKPLVLLELLSEFAGSLSIVFTASVNSTHRLARLLQLYSTHPERIREFSSSLSQKQ 386
Query: 52 ----------GHMQVLVCSDAMTSGMDVERAA---------YIKTYIHRAGPRARAGQNG 92
G ++ +VCSDAM GMD+E A +IKTYIHR G ARAG++G
Sbjct: 387 RSSLVADCKAGRVETVVCSDAMARGMDIEDVANVVNYDVPSFIKTYIHRVGRTARAGRHG 446
Query: 93 HCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIY 143
C TL+ + Q+K ++L++AD++ +++ +++L P Y
Sbjct: 447 RCVTLVK--------LGQMKSMMRMLKKADNNKLKPYALQQEHMKTLVPRY 489
>gi|348688141|gb|EGZ27955.1| hypothetical protein PHYSODRAFT_258291 [Phytophthora sojae]
Length = 550
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 45/171 (26%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANS-------------PKTLKAFRGK----- 51
C++ KP+ L+ LL G IVF +SV ++ P+ ++ F
Sbjct: 325 CDTGSKPLVLLELLSEFAGALSIVFTASVNSTHRLARLLQLYSTHPERIREFSSSLSQKQ 384
Query: 52 ----------GHMQVLVCSDAMTSGMDVERAA---------YIKTYIHRAGPRARAGQNG 92
G ++ +VCSDAM GMD+E A +IKTYIHR G ARAG++G
Sbjct: 385 RSALVADFKAGRVETVVCSDAMARGMDIEDVANVVNYDVPSFIKTYIHRVGRTARAGRHG 444
Query: 93 HCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIY 143
C TL+ M Q+K ++L++AD++ + + +++L P Y
Sbjct: 445 RCVTLVK--------MGQMKGMMRMLKKADNNKLKPYPLQQEHMKTLVPRY 487
>gi|159485610|ref|XP_001700837.1| hypothetical protein CHLREDRAFT_167836 [Chlamydomonas reinhardtii]
gi|158281336|gb|EDP07091.1| predicted protein, partial [Chlamydomonas reinhardtii]
Length = 321
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 73/128 (57%), Gaps = 21/128 (16%)
Query: 25 NLGGEKFIVFASSVANSPKT--LKAFRGKGHMQVLVCSDAMTSGMDVE---------RAA 73
+L G K + ++S V + L+ FR KG +VLV SDAMT GMDV+
Sbjct: 201 DLAG-KVVEYSSHVPAKERASGLERFR-KGDAKVLVASDAMTRGMDVDCVQAVINYDAPV 258
Query: 74 YIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPS 133
Y KTY+HRAG ARAG++G TLL +DED ++ FK ++++AD++ +P+
Sbjct: 259 YAKTYVHRAGRTARAGKSGRVVTLL-RDED-------MRHFKAMIRKADNNFVRELKLPA 310
Query: 134 SSIESLRP 141
+ES RP
Sbjct: 311 ERVESFRP 318
>gi|440909766|gb|ELR59643.1| ATP-dependent RNA helicase DDX51, partial [Bos grunniens mutus]
Length = 542
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 42/182 (23%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRG------------------- 50
C + KP+ ++ L+ + + + F +S NS + ++AF G
Sbjct: 365 CSLRFKPLVILHLILEMNFSRVLCFTNSRENSHRLVQAFGGVTVAEFSSRYGPGQRKGIL 424
Query: 51 ----KGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGHCFTL 97
+G +Q+L+ +DAM G+DV + Y++TY+HR G ARAG++G FTL
Sbjct: 425 KQFEQGKIQLLISTDAMARGIDVQGVQLVVNYDAPQYLRTYVHRVGRTARAGKSGQAFTL 484
Query: 98 LPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS--EYVESQANRK 155
L K Q +RF ++L++ H PS ++ L P Y+ +E +
Sbjct: 485 LLK--------VQERRFLRMLEEGGVPGLERHDTPSELLQPLVPQYEEALSLLEKAVKEE 536
Query: 156 RK 157
RK
Sbjct: 537 RK 538
>gi|260801978|ref|XP_002595871.1| hypothetical protein BRAFLDRAFT_84239 [Branchiostoma floridae]
gi|229281121|gb|EEN51883.1| hypothetical protein BRAFLDRAFT_84239 [Branchiostoma floridae]
Length = 806
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 65/117 (55%), Gaps = 15/117 (12%)
Query: 17 IYLIPLLRNLGGEKFIVFASSVANSPKT--LKAFRGKGHMQVLVCSDAMTSGMDVERAA- 73
+YL+ L GG F+S++ +T L FR G +Q++VCSDAM GMDVE
Sbjct: 624 LYLLAKL--FGGVTVAEFSSNLPPDRRTKILTKFR-TGKIQLIVCSDAMARGMDVEGVEV 680
Query: 74 --------YIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRF-KKLLQQA 121
Y+KTYIHR G ARAG+ G F+L+ ++E+ L Q F ++ LQ+A
Sbjct: 681 VISYDVPPYVKTYIHRVGRTARAGKEGRAFSLVLQEEEFLQEFLQEAFFLQEFLQEA 737
>gi|281340804|gb|EFB16388.1| hypothetical protein PANDA_012336 [Ailuropoda melanoleuca]
Length = 490
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 74/151 (49%), Gaps = 22/151 (14%)
Query: 19 LIPLLRNLGGEKFIVFASSVANSPK--TLKAFRGKGHMQVLVCSDAMTSGMDVERAA--- 73
L L++ GG F+S S + LK F +G +Q+L+ +DAM G+DV+
Sbjct: 349 LFLLVQAFGGVTAAEFSSRCGPSQRKVVLKQFE-QGKIQLLISTDAMARGIDVQGVQRVI 407
Query: 74 ------YIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCP 127
Y++TY+HR G ARAG+ G FTLL K Q ++F ++L +A
Sbjct: 408 NYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLK--------VQERKFLRMLAEAGVPEMA 459
Query: 128 VHSIPSSSIESLRPIYKSEYVESQANRKRKI 158
H IP+ ++ L P Y E SQ R K+
Sbjct: 460 RHDIPNELLQPLLPRY--EEALSQLERAVKV 488
>gi|2326341|emb|CAA72069.1| RH1 protein [Arabidopsis thaliana]
Length = 244
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 56/112 (50%), Gaps = 39/112 (34%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------- 41
ICE+ +KP+YL+ LL++ GEK I+F SSV +
Sbjct: 134 ICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDPKIKAKEYSGGLNQS 193
Query: 42 --PKTLKAFRGKGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRA 82
K LKAFR KG +QVLV SDA+T GMDV + + KT+IHRA
Sbjct: 194 LRSKELKAFR-KGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIHRA 244
>gi|320169870|gb|EFW46769.1| DEAD-box ATP-dependent RNA helicase 1 [Capsaspora owczarzaki ATCC
30864]
Length = 866
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 52/146 (35%), Positives = 73/146 (50%), Gaps = 29/146 (19%)
Query: 20 IPLLRNLG-GEKFIVFASSVA--NSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAA--- 73
+P LR++ G F+SS++ + K L FR + VL+CSDAM GMD+E A
Sbjct: 697 LPELRDIQLGSLVAEFSSSLSKDDRGKMLNRFR-TNQVHVLICSDAMARGMDIENVAEVI 755
Query: 74 ------YIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCP 127
Y KTY+HR G ARAG++G TLL +E V FK++L +A H S P
Sbjct: 756 NYDVPVYFKTYVHRVGRTARAGRSGQALTLLRSEE--------VAAFKRMLGKAGH-SLP 806
Query: 128 VH-------SIPSSSIESLRPIYKSE 146
+ ++ESLR + E
Sbjct: 807 AKIRGDSAAHFANEALESLRAAIEKE 832
>gi|297484677|ref|XP_002694482.1| PREDICTED: ATP-dependent RNA helicase DDX51, partial [Bos taurus]
gi|296478689|tpg|DAA20804.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Bos taurus]
Length = 555
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 45/185 (24%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKT---LKAFRG---------------- 50
C + KP+ ++ L+ + + + F +S NS + ++AF G
Sbjct: 375 CSLRFKPLVILHLILEMNFSRVLCFTNSRENSHRLFLLVQAFGGVTVAEFSSRYGPGQRK 434
Query: 51 -------KGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGHC 94
+G +Q+L+ +DAM G+DV + Y++TY+HR G ARAG++G
Sbjct: 435 SILKQFEQGKIQLLISTDAMARGIDVQGVQLVVNYDAPQYLRTYVHRVGRTARAGKSGQA 494
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS--EYVESQA 152
FTLL K Q +RF ++L++ H PS ++ L P Y+ +E
Sbjct: 495 FTLLLK--------VQERRFLRMLEEGGVPGLERHDTPSELLQPLVPQYEEALSLLEKAV 546
Query: 153 NRKRK 157
+RK
Sbjct: 547 KEERK 551
>gi|194674602|ref|XP_001787674.1| PREDICTED: ATP-dependent RNA helicase DDX51, partial [Bos taurus]
Length = 565
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 45/185 (24%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKT---LKAFRG---------------- 50
C + KP+ ++ L+ + + + F +S NS + ++AF G
Sbjct: 385 CSLRFKPLVILHLILEMNFSRVLCFTNSRENSHRLFLLVQAFGGVTVAEFSSRYGPGQRK 444
Query: 51 -------KGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGHC 94
+G +Q+L+ +DAM G+DV + Y++TY+HR G ARAG++G
Sbjct: 445 SILKQFEQGKIQLLISTDAMARGIDVQGVQLVVNYDAPQYLRTYVHRVGRTARAGKSGQA 504
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS--EYVESQA 152
FTLL K Q +RF ++L++ H PS ++ L P Y+ +E
Sbjct: 505 FTLLLK--------VQERRFLRMLEEGGVPGLERHDTPSELLQPLVPQYEEALSLLEKAV 556
Query: 153 NRKRK 157
+RK
Sbjct: 557 KEERK 561
>gi|198425548|ref|XP_002130172.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 51
[Ciona intestinalis]
Length = 636
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 68/133 (51%), Gaps = 26/133 (19%)
Query: 27 GGEKFIV--FASSVANSP--KTLKAFRGKGHMQVLVCSDAMTSGMDV---------ERAA 73
G ++FI FAS + +S K LK F G + VLVCSD+M G+DV +
Sbjct: 500 GKKEFICTEFASHLPSSKRGKVLKDFIS-GKINVLVCSDSMARGLDVPCVEHVILYDVPP 558
Query: 74 YIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHS--I 131
IKTYIHR G ARAG G +TLL K E + FKK++ AD C V + I
Sbjct: 559 LIKTYIHRIGRTARAGATGTAYTLLRKQE--------IFHFKKMI--ADAGKCKVKTMKI 608
Query: 132 PSSSIESLRPIYK 144
P S + + IY+
Sbjct: 609 PKESTQKMVSIYE 621
>gi|351698593|gb|EHB01512.1| ATP-dependent RNA helicase DDX51, partial [Heterocephalus glaber]
Length = 536
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 22/148 (14%)
Query: 22 LLRNLGGEKFIVFAS--SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDV---------E 70
LL+ GG F+S + K LK F +G +Q+L+ +DA G+DV +
Sbjct: 399 LLQAFGGVSVAEFSSRYGPGHRRKVLKQFE-QGKIQLLISTDATARGIDVLGVELVINYD 457
Query: 71 RAAYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHS 130
Y++TY+HR G ARAG+ G FTLL K Q + F ++L + H
Sbjct: 458 APQYLRTYVHRVGRTARAGKTGQAFTLLLK--------VQERTFLRMLAEGGAPELARHE 509
Query: 131 IPSSSIESLRPIYKSEYVESQANRKRKI 158
IPS ++ L P Y E SQ R K+
Sbjct: 510 IPSKLLQPLVPRY--EEALSQLERTVKV 535
>gi|301775625|ref|XP_002923233.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Ailuropoda
melanoleuca]
Length = 517
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 54/167 (32%), Positives = 79/167 (47%), Gaps = 24/167 (14%)
Query: 4 NLSPQIC--ESKLKPIYLIPLLRNLGGEKFIVFASSVANSPK--TLKAFRGKGHMQVLVC 59
N S +C S+ L L++ GG F+S S + LK F +G +Q+L+
Sbjct: 354 NFSRVLCFTNSRENSHRLFLLVQAFGGVTAAEFSSRCGPSQRKVVLKQFE-QGKIQLLIS 412
Query: 60 SDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQ 110
+DAM G+DV+ Y++TY+HR G ARAG+ G FTLL K Q
Sbjct: 413 TDAMARGIDVQGVQRVINYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLK--------VQ 464
Query: 111 VKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQANRKRK 157
++F ++L +A H IP+ ++ L P Y E SQ R K
Sbjct: 465 ERKFLRMLAEAGVPEMARHDIPNELLQPLLPRY--EEALSQLERAVK 509
>gi|444726438|gb|ELW66972.1| ATP-dependent RNA helicase DDX51 [Tupaia chinensis]
Length = 478
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 20/142 (14%)
Query: 19 LIPLLRNLGGEKFIVFASSVANS--PKTLKAFRGKGHMQVLVCSDAMTSGMDV------- 69
L L+R GG F+S + + LK F +G +Q+L+ +DA G+DV
Sbjct: 332 LFLLVRAFGGVNAAEFSSRLGPGCRKRLLKQFE-QGKIQLLISTDATARGIDVPGVELVL 390
Query: 70 --ERAAYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCP 127
+ Y + Y+HR G ARAGQ G FT LL Q +RF ++L +A +
Sbjct: 391 NYDAPQYPRAYVHRVGRTARAGQTGQAFT--------LLLRVQERRFLQMLAEAGVPTLE 442
Query: 128 VHSIPSSSIESLRPIYKSEYVE 149
H IP ++ L P Y+ E
Sbjct: 443 RHEIPGDVLQPLVPRYEEALTE 464
>gi|390348197|ref|XP_797208.3| PREDICTED: uncharacterized protein LOC592601 [Strongylocentrotus
purpuratus]
Length = 997
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 57/97 (58%), Gaps = 14/97 (14%)
Query: 17 IYLIPLLRNLGGEKFIVFASSVANSPK--TLKAFRGKGHMQVLVCSDAMTSGMDVERA-- 72
+YL LL+ +G + F+S+++ S + LK F+ G +Q+LVCSDAM GMD+E
Sbjct: 676 LYL--LLKLMGDVEVSEFSSNLSQSERQNILKQFKA-GKIQILVCSDAMARGMDIENVRC 732
Query: 73 -------AYIKTYIHRAGPRARAGQNGHCFTLLPKDE 102
++KTYIHR G ARAG+ G F+ + K E
Sbjct: 733 VISYDLPPHLKTYIHRVGRTARAGRGGTAFSFIRKKE 769
>gi|34782983|gb|AAH12461.2| DDX51 protein, partial [Homo sapiens]
Length = 186
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 43/170 (25%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKT---LKAFRG---------------- 50
C KP+ ++ L+ +G + + F +S NS + ++AF G
Sbjct: 6 CSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGGVDVAEFSSRYGPGQRR 65
Query: 51 -------KGHMQVLVCSDAMTSGMDVERAA---------YIKTYIHRAGPRARAGQNGHC 94
+G +Q+L+ +DA G+DV+ Y++TY+HR G ARAG+ G
Sbjct: 66 MILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQA 125
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYK 144
FTLL K Q +RF ++L +A H + S ++ L P Y+
Sbjct: 126 FTLLLK--------VQERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYE 167
>gi|440790460|gb|ELR11743.1| helicase conserved Cterminal domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 249
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 43/152 (28%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANSPK-----TLKAFRG------------- 50
IC KP+ L+ LL ++ + F SSV ++ + TL G
Sbjct: 3 ICSLAYKPLVLLYLLEMFDFKRTLCFTSSVESTHRLYLLLTLMGQTGVAEYSSTLPQRKR 62
Query: 51 --------KGHMQVLVCSDAMTSGMDVERAA---------YIKTYIHRAGPRARAGQNGH 93
KG +++++ SDAM+ G+D+E +IKTY+HR G ARAG+ G
Sbjct: 63 TQIIEKFAKGDIKIVIASDAMSRGLDIEDVENVINYDVPPFIKTYVHRVGRTARAGRQGK 122
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDS 125
+TLL K E F+ +L++A+H +
Sbjct: 123 TYTLLLKSE--------AHHFRSMLKKAEHST 146
>gi|291412934|ref|XP_002722733.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Oryctolagus
cuniculus]
Length = 507
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 43/171 (25%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKT---LKAFRG---------------- 50
C + KP+ ++ L+ L + + F +S NS + ++AF G
Sbjct: 327 CRLRSKPLVVLHLILELKFSRVLCFTNSRENSHRLFLLVQAFGGVSVAEFSSRCGPGQRR 386
Query: 51 -------KGHMQVLVCSDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQNGHC 94
+G +Q+LV +DA G+DV+ Y++TY+HR G ARAG+ G
Sbjct: 387 GILKRFQQGKIQLLVSTDAAARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGRTGQA 446
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS 145
FTLL K Q +RF ++L++A H PS ++ L P Y++
Sbjct: 447 FTLLLK--------VQERRFLQMLEEAGAPRLQRHETPSELLQPLVPRYEA 489
>gi|395513523|ref|XP_003760973.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Sarcophilus harrisii]
Length = 668
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 43/177 (24%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKT---LKAFRG---------------- 50
C KP+ ++ L+RNL + + F +S +S + +KAF G
Sbjct: 490 CSLNSKPLVILHLMRNLKFSRVLCFTNSREHSHRLFLLVKAFGGIPVAEFSSRFGPGQRK 549
Query: 51 -------KGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGHC 94
+G +Q+L+ +DA G+DV + YI+TY+HR G ARAG G
Sbjct: 550 MILKQFEQGKIQLLISTDATARGIDVKGVKLVINYDAPQYIRTYVHRVGRTARAGHTGLA 609
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQ 151
FTLL K Q ++F ++L++A H + + ++SL P Y+ E Q
Sbjct: 610 FTLLLK--------VQEQKFLQMLREARAPELGKHLVRNEHLKSLVPQYEEALAELQ 658
>gi|168044025|ref|XP_001774483.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674195|gb|EDQ60707.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 462
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 55/132 (41%), Gaps = 38/132 (28%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFR------------------- 49
I + KP+ L+ LL + I+F +SV + + R
Sbjct: 324 ITRASKKPLVLVALLEQFKNQSTIIFNASVEATHQLFLLLRHFYAGQEFSVVEYSSRQPQ 383
Query: 50 ----------GKGHMQVLVCSDAMTSGMDVERAA---------YIKTYIHRAGPRARAGQ 90
G + V+V SDAMT GMDVE A Y KTY+HR G ARAGQ
Sbjct: 384 HIRRKALADFTDGKVHVIVASDAMTRGMDVEGVANVINYDVPVYAKTYVHRVGRTARAGQ 443
Query: 91 NGHCFTLLPKDE 102
G FTLL K E
Sbjct: 444 AGRAFTLLVKKE 455
>gi|441630929|ref|XP_004093170.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX51,
partial [Nomascus leucogenys]
Length = 684
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 46/192 (23%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKT---LKAFRG---------------- 50
C KP+ ++ L+ +G + + F +S NS + ++AF G
Sbjct: 396 CSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGGVDVAEFSSRYGPXQRR 455
Query: 51 -------KGHMQVLVCSDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQNGHC 94
+G +Q+L+ +DA G+DV+ Y++TY+HR G ARAG+ G
Sbjct: 456 MILKQXEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQA 515
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYK---SEYVESQ 151
FTLL K Q +RF ++L +A H + S ++ L P Y+ S+ ES
Sbjct: 516 FTLLLK--------VQERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYEEALSQLEESV 567
Query: 152 ANRKRKIGFKLS 163
R + G K S
Sbjct: 568 KVRAAESGMKPS 579
>gi|355786666|gb|EHH66849.1| hypothetical protein EGM_03914, partial [Macaca fascicularis]
Length = 494
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 43/170 (25%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKT---LKAFRG---------------- 50
C KP+ ++ L+ +G K + F +S NS + ++AF G
Sbjct: 314 CSLSSKPLVVLHLVLEMGFSKVLCFTNSRENSHRLFLLVQAFGGVDVAEFSSRYGPGQRR 373
Query: 51 -------KGHMQVLVCSDAMTSGMDVERAA---------YIKTYIHRAGPRARAGQNGHC 94
+G +Q+L+ +DA G+DV+ Y++TY+HRAG ARAG+ G
Sbjct: 374 RILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRAGRTARAGKMGQA 433
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYK 144
FTLL K Q +RF ++L +A H + S ++ L P Y+
Sbjct: 434 FTLLLK--------VQERRFLQMLTEAGAPELRRHELSSKLLQPLVPQYE 475
>gi|119618949|gb|EAW98543.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo sapiens]
Length = 291
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 45/185 (24%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKT---LKAFRG---------------- 50
C KP+ ++ L+ +G + + F +S NS + ++AF G
Sbjct: 111 CSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGGVDVAEFSSRYGPGQRR 170
Query: 51 -------KGHMQVLVCSDAMTSGMDVERAA---------YIKTYIHRAGPRARAGQNGHC 94
+G +Q+L+ +DA G+DV+ Y++TY+HR G ARAG+ G
Sbjct: 171 MILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQA 230
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEY--VESQA 152
FTLL K Q +RF ++L +A H + S ++ L P Y+ +E
Sbjct: 231 FTLLLK--------VQERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYEEALSQLEESV 282
Query: 153 NRKRK 157
+RK
Sbjct: 283 KEERK 287
>gi|311270521|ref|XP_003132907.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Sus scrofa]
Length = 298
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 18/110 (16%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGHCF 95
LK F +G +Q+L+ +DA G+DV + Y++TY+HR G ARAG++G F
Sbjct: 180 LKQFE-QGKIQLLISTDATARGIDVQGVQLVLNYDAPQYLRTYVHRVGRTARAGKSGQAF 238
Query: 96 TLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS 145
TLL K Q +RF ++L++ H PS ++ L P Y++
Sbjct: 239 TLLLK--------VQERRFLRMLEEGGVPGLERHDTPSELLQPLVPRYEA 280
>gi|194214438|ref|XP_001915702.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Equus caballus]
Length = 550
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 51/172 (29%), Positives = 79/172 (45%), Gaps = 24/172 (13%)
Query: 1 MSVNLSPQIC--ESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKT--LKAFRGKGHMQV 56
+ +N S +C S+ L L + GG F+S + LK F +G +Q+
Sbjct: 384 LEMNFSRVLCFTNSRENSHRLFLLAQAFGGVSVAEFSSRYGPGQRKMILKQFE-QGKIQL 442
Query: 57 LVCSDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLY 107
L+ +DAM G+DV+ Y++TY+HR G ARAG+ G FTLL K
Sbjct: 443 LISTDAMARGIDVQGVQLVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLK------- 495
Query: 108 MFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS--EYVESQANRKRK 157
Q +RF ++L + H PS ++ L P Y++ +E +RK
Sbjct: 496 -VQERRFLRMLAEGGVPELERHDTPSKLLQPLVPRYEAALSQLERAVKEERK 546
>gi|195014606|ref|XP_001984044.1| GH15223 [Drosophila grimshawi]
gi|193897526|gb|EDV96392.1| GH15223 [Drosophila grimshawi]
Length = 675
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 66/149 (44%), Gaps = 44/149 (29%)
Query: 3 VNLSPQIC--ESKLKPIYLIPLLRNLGGEKFIVFASSVAN--------------SPKTLK 46
L+ Q C E +LKP+ L +++ G ++F+ F +S SP T++
Sbjct: 417 TELTEQYCVTELRLKPLTLYTMVQTYGWKRFLCFTNSADTADRLAFVLKHLFQGSPITVE 476
Query: 47 AFRG---------------KGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRA 82
KG + LVCSDA+ G+DV E +IKTYIHR
Sbjct: 477 ELSANMKVGVRARRLADFAKGSIHGLVCSDALARGIDVPNVDIVLSYEAPRHIKTYIHRV 536
Query: 83 GPRARAGQNGHCFTLLPKDED----KLLY 107
G ARAGQ G TLL + + K+LY
Sbjct: 537 GRTARAGQKGTAITLLTEKDQAPFKKMLY 565
>gi|410047553|ref|XP_003954509.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX51,
partial [Pan troglodytes]
Length = 497
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 45/185 (24%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKT---LKAFRG---------------- 50
C KP+ ++ L+ +G + + F +S NS + ++AF G
Sbjct: 317 CSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGGVDVAEFSSRYGPGQRR 376
Query: 51 -------KGHMQVLVCSDAMTSGMDVERAA---------YIKTYIHRAGPRARAGQNGHC 94
+G +Q+L+ +DA G+DV+ Y++TY+HR G ARAG+ G
Sbjct: 377 MILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQA 436
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEY--VESQA 152
FTLL K Q +RF ++L +A H + S ++ L P Y+ +E
Sbjct: 437 FTLLLK--------VQERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYEEALSQLEESV 488
Query: 153 NRKRK 157
+RK
Sbjct: 489 KEERK 493
>gi|348550777|ref|XP_003461207.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
DDX51-like [Cavia porcellus]
Length = 677
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 20/155 (12%)
Query: 1 MSVNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVA--NSPKTLKAFRGKGHMQVLV 58
MS++ + S+ L L++ GG F++ + K LK F +G +Q+L+
Sbjct: 513 MSISRTLCFTNSRENSHRLFLLVQAFGGVSVAEFSACYGPGHRRKILKQFE-QGKIQLLI 571
Query: 59 CSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMF 109
+DA G+DV + Y++TY+HR G ARAG+ G FTLL K
Sbjct: 572 STDATARGIDVPGVELVINYDAPQYLRTYVHRVGRTARAGRMGRAFTLLLK--------V 623
Query: 110 QVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYK 144
Q +RF ++L +A H +PS ++ L P Y+
Sbjct: 624 QERRFLRMLAEAGAPELVRHEVPSKLLQPLVPRYE 658
>gi|397487104|ref|XP_003814650.1| PREDICTED: ATP-dependent RNA helicase DDX51, partial [Pan paniscus]
Length = 529
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 45/185 (24%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKT---LKAFRG---------------- 50
C KP+ ++ L+ +G + + F +S NS + ++AF G
Sbjct: 349 CSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGGVDVAEFSSRYGPGQRR 408
Query: 51 -------KGHMQVLVCSDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQNGHC 94
+G +Q+L+ +DA G+DV+ Y++TY+HR G ARAG+ G
Sbjct: 409 MILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQA 468
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS--EYVESQA 152
FTLL K Q +RF ++L +A H + S ++ L P Y+ +E
Sbjct: 469 FTLLLK--------VQERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYEEALSQLEESV 520
Query: 153 NRKRK 157
+RK
Sbjct: 521 KEERK 525
>gi|426247154|ref|XP_004017351.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX51
[Ovis aries]
Length = 676
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 43/170 (25%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKT---LKAFRG---------------- 50
C + KP+ ++ L+ + + + F +S NS + ++AF G
Sbjct: 496 CSLRFKPLVILHLILEMNFSRVLCFTNSRENSHRLFLLVQAFGGVTVAEFSSRYGPGQRK 555
Query: 51 -------KGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGHC 94
+G +Q+L+ +DA G+DV + Y++TY+HR G ARAG++G
Sbjct: 556 SILKQFEQGKIQLLISTDATARGIDVQGVQLVVNYDAPQYLRTYVHRVGRTARAGKSGQA 615
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYK 144
FTLL K Q +RF +L++ H PS ++ L P Y+
Sbjct: 616 FTLLLK--------VQERRFLHMLEEGGVPGMERHDTPSELLQPLVPRYE 657
>gi|405968018|gb|EKC33126.1| ATP-dependent RNA helicase DDX51 [Crassostrea gigas]
Length = 1179
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 14 LKPIYLIPLLRNLGGEKFIVFASSVANS--PKTLKAFRGKGHMQVLVCSDAMTSGMDVER 71
L + L L+R GG + + S K LK F+ G + +L+CSDAM GMD++
Sbjct: 547 LHNLQLYHLIRLFGGINVAEITAKLQASRRSKVLKKFQ-NGSIDILICSDAMARGMDIDD 605
Query: 72 AAY---------IKTYIHRAGPRARAGQNGHCFTLLPKDE 102
Y IKTYIHR G ARAG+ G +LL K E
Sbjct: 606 VQYVISYDPPPYIKTYIHRVGRTARAGKEGTALSLLQKKE 645
>gi|355683374|gb|AER97086.1| DEAD box polypeptide 51 [Mustela putorius furo]
Length = 474
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 70/150 (46%), Gaps = 22/150 (14%)
Query: 19 LIPLLRNLGGEKFIVFASSVANSPK--TLKAFRGKGHMQVLVCSDAMTSGMDV------- 69
L L++ GG F+S + LK F +G +Q+L+ +DA G+DV
Sbjct: 330 LFLLVQAFGGVTAAEFSSRCGPGQRKAVLKQFE-QGKIQLLISTDATARGIDVQGVQLVV 388
Query: 70 --ERAAYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCP 127
+ Y++TY+HR G ARAG+ G FTLL K Q +RF ++L +A
Sbjct: 389 NYDAPQYLRTYVHRVGRTARAGRTGQAFTLLLK--------VQERRFLRMLAEAGVPDMT 440
Query: 128 VHSIPSSSIESLRPIYKSEYVESQANRKRK 157
IPS ++ L P Y E SQ R K
Sbjct: 441 RQDIPSELLQPLVPRY--EEALSQLERAVK 468
>gi|109099284|ref|XP_001105887.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Macaca mulatta]
Length = 664
Score = 62.4 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 43/170 (25%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKT---LKAFRG---------------- 50
C KP+ ++ L+ +G K + F +S NS + ++AF G
Sbjct: 484 CSLSSKPLVVLHLVLEMGFSKVLCFTNSRENSHRLFLLVQAFGGVDVAEFSSRYGPGQRR 543
Query: 51 -------KGHMQVLVCSDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQNGHC 94
+G +Q+L+ +DA G+DV+ Y++TY+HRAG ARAG+ G
Sbjct: 544 RILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRAGRTARAGKMGQA 603
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYK 144
FTLL K Q +RF ++L +A H + S ++ L P Y+
Sbjct: 604 FTLLLK--------VQERRFLQMLTEAGAPELRRHELSSKLLQPLVPRYE 645
>gi|195428034|ref|XP_002062080.1| GK17342 [Drosophila willistoni]
gi|194158165|gb|EDW73066.1| GK17342 [Drosophila willistoni]
Length = 681
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 50/159 (31%)
Query: 4 NLSPQIC--ESKLKPIYLIPLLRNLGGEKFIVFASSVANSPK------------------ 43
L+ Q C E +LKP+ L L++ ++F+ F++S + +
Sbjct: 416 ELTEQYCVTEMRLKPLTLFALIQQYKWKRFLCFSNSADTANRLAFVLKILFQSYDITVEE 475
Query: 44 ------------TLKAFRGKGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRA 82
TL F +G + L+CSDA+ G+DV E A +IKTYIHR
Sbjct: 476 LSGNMSALERSTTLNNF-ARGKINGLICSDALARGIDVADVDIVISYEAARHIKTYIHRV 534
Query: 83 GPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQA 121
G ARAG+ G TLL D+D + +FKK+L A
Sbjct: 535 GRTARAGKLGTAVTLLS-DQD-------LDQFKKMLLDA 565
>gi|426374738|ref|XP_004054220.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Gorilla gorilla
gorilla]
Length = 641
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 45/185 (24%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKT---LKAFRG---------------- 50
C KP+ ++ L+ +G + + F +S NS + ++AF G
Sbjct: 461 CSLNSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGGVDVAEFSSRYGPGQRR 520
Query: 51 -------KGHMQVLVCSDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQNGHC 94
+G +Q+L+ +DA G+DV+ Y++TY+HR G ARAG+ G
Sbjct: 521 MILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQA 580
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS--EYVESQA 152
FTLL K Q +RF ++L +A H + S ++ L P Y+ +E
Sbjct: 581 FTLLLK--------VQERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYEEALSQLEESV 632
Query: 153 NRKRK 157
+RK
Sbjct: 633 KEERK 637
>gi|154759257|ref|NP_778236.2| ATP-dependent RNA helicase DDX51 [Homo sapiens]
gi|229462978|sp|Q8N8A6.3|DDX51_HUMAN RecName: Full=ATP-dependent RNA helicase DDX51; AltName: Full=DEAD
box protein 51
Length = 666
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 45/185 (24%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKT---LKAFRG---------------- 50
C KP+ ++ L+ +G + + F +S NS + ++AF G
Sbjct: 486 CSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGGVDVAEFSSRYGPGQRR 545
Query: 51 -------KGHMQVLVCSDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQNGHC 94
+G +Q+L+ +DA G+DV+ Y++TY+HR G ARAG+ G
Sbjct: 546 MILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQA 605
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS--EYVESQA 152
FTLL K Q +RF ++L +A H + S ++ L P Y+ +E
Sbjct: 606 FTLLLK--------VQERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYEEALSQLEESV 657
Query: 153 NRKRK 157
+RK
Sbjct: 658 KEERK 662
>gi|21756727|dbj|BAC04942.1| unnamed protein product [Homo sapiens]
gi|326205429|dbj|BAJ84089.1| ATP-dependent RNA helicase DDX51 [Homo sapiens]
Length = 666
Score = 62.0 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 45/185 (24%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKT---LKAFRG---------------- 50
C KP+ ++ L+ +G + + F +S NS + ++AF G
Sbjct: 486 CSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGGVDVAEFSSRYGPGQRR 545
Query: 51 -------KGHMQVLVCSDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQNGHC 94
+G +Q+L+ +DA G+DV+ Y++TY+HR G ARAG+ G
Sbjct: 546 MILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQA 605
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS--EYVESQA 152
FTLL K Q +RF ++L +A H + S ++ L P Y+ +E
Sbjct: 606 FTLLLK--------VQERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYEEALSQLEESV 657
Query: 153 NRKRK 157
+RK
Sbjct: 658 KEERK 662
>gi|25455599|gb|AAH40185.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo sapiens]
Length = 666
Score = 62.0 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 45/185 (24%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKT---LKAFRG---------------- 50
C KP+ ++ L+ +G + + F +S NS + ++AF G
Sbjct: 486 CSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGGVDVAEFSSRYGPGQRR 545
Query: 51 -------KGHMQVLVCSDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQNGHC 94
+G +Q+L+ +DA G+DV+ Y++TY+HR G ARAG+ G
Sbjct: 546 MILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQA 605
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEY--VESQA 152
FTLL K Q +RF ++L +A H + S ++ L P Y+ +E
Sbjct: 606 FTLLLK--------VQERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYEEALSKLEESV 657
Query: 153 NRKRK 157
+RK
Sbjct: 658 KEERK 662
>gi|296213300|ref|XP_002753212.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Callithrix jacchus]
Length = 797
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 49/187 (26%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKT---LKAFRG---------------- 50
C KP+ ++ L+ +G + + F +S NS + ++AF G
Sbjct: 487 CSLSSKPLVILHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGGVDVAEFSSRYGPGQRR 546
Query: 51 -------KGHMQVLVCSDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQNGHC 94
+G +Q+L+ +DA G+DV+ Y++TY+HR G ARAG+ G
Sbjct: 547 AILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQA 606
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYK------SEYV 148
FTLL K Q +RF ++L +A + H +P + L Y+ E V
Sbjct: 607 FTLLLK--------VQERRFLRMLAEAGAPALQRHELPGKLLRPLVSRYEEALSQLEESV 658
Query: 149 ESQANRK 155
+ QA R+
Sbjct: 659 KPQARRQ 665
>gi|297693495|ref|XP_002824053.1| PREDICTED: ATP-dependent RNA helicase DDX51 isoform 1 [Pongo
abelii]
Length = 672
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 43/170 (25%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKT---LKAFRG---------------- 50
C KP+ ++ L+ +G + + F +S NS + ++AF G
Sbjct: 492 CSLNSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGGVDVAEFSSRYGPGQRR 551
Query: 51 -------KGHMQVLVCSDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQNGHC 94
+G +Q+L+ +DA G+DV+ Y++TY+HR G ARAG+ G
Sbjct: 552 MILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQA 611
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYK 144
FTLL K Q +RF ++L +A H + S ++ L P Y+
Sbjct: 612 FTLLLK--------VQERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYE 653
>gi|297693497|ref|XP_002824054.1| PREDICTED: ATP-dependent RNA helicase DDX51 isoform 2 [Pongo
abelii]
Length = 665
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 43/170 (25%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKT---LKAFRG---------------- 50
C KP+ ++ L+ +G + + F +S NS + ++AF G
Sbjct: 485 CSLNSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGGVDVAEFSSRYGPGQRR 544
Query: 51 -------KGHMQVLVCSDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQNGHC 94
+G +Q+L+ +DA G+DV+ Y++TY+HR G ARAG+ G
Sbjct: 545 MILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQA 604
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYK 144
FTLL K Q +RF ++L +A H + S ++ L P Y+
Sbjct: 605 FTLLLK--------VQERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYE 646
>gi|443730193|gb|ELU15819.1| hypothetical protein CAPTEDRAFT_183322 [Capitella teleta]
Length = 576
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 67/164 (40%), Gaps = 45/164 (27%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANS---------------------------P 42
CE KP+ L L+ + + F +SV ++
Sbjct: 399 CEENTKPLVLFHLIHTRKYRQVLCFTNSVKSTHRLCTLLRLMGKVSVEELSSHISINKRQ 458
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAA---------YIKTYIHRAGPRARAGQNGH 93
KTLK F G ++++VCSD M GMD+E A +I+ Y+HR G AR G G
Sbjct: 459 KTLKKF-AAGKIEIVVCSDQMARGMDIENAKCVISYDVPNFIQNYVHRVGRTARGGHAGS 517
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIE 137
TLL QVK FK++L +A ++ S ++
Sbjct: 518 AITLLDHS--------QVKFFKEMLHKAGKSDFKTETVKPSELK 553
>gi|402888183|ref|XP_003907453.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Papio anubis]
Length = 656
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 43/170 (25%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKT---LKAFRG---------------- 50
C KP+ ++ L+ +G + + F +S NS + ++AF G
Sbjct: 476 CSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGGVDVAEFSSRYGPGQRR 535
Query: 51 -------KGHMQVLVCSDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQNGHC 94
+G +Q+L+ +DA G+DV+ Y++TY+HRAG ARAG+ G
Sbjct: 536 RILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRAGRTARAGKTGQA 595
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYK 144
FTLL + Q +RF ++L +A H + S +++L P Y+
Sbjct: 596 FTLLLR--------VQERRFLQMLTEAGVPELRRHELSSKLLQALVPRYE 637
>gi|73994975|ref|XP_543351.2| PREDICTED: ATP-dependent RNA helicase DDX51 [Canis lupus
familiaris]
Length = 631
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 49/154 (31%), Positives = 73/154 (47%), Gaps = 22/154 (14%)
Query: 4 NLSPQIC--ESKLKPIYLIPLLRNLGGEKFIVFASSVANSPK--TLKAFRGKGHMQVLVC 59
N S +C S+ L L++ GG F+S + LK F +G +Q+L+
Sbjct: 468 NFSRVLCFTNSRENSHRLFLLVQAFGGVAAAEFSSRCRPGQRKVVLKQFE-QGKIQLLIS 526
Query: 60 SDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQ 110
+DAM G+DV+ Y++TY+HR G ARAG+ G FTLL K Q
Sbjct: 527 TDAMARGIDVQGVQLVINYDAPQYLRTYVHRVGRTARAGRTGQAFTLLLK--------VQ 578
Query: 111 VKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYK 144
+RF ++L +A H I S ++ L P Y+
Sbjct: 579 ERRFLQMLAEAGVPKMARHDIHSELLQPLVPRYE 612
>gi|344299254|ref|XP_003421302.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Loxodonta africana]
Length = 690
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 65/137 (47%), Gaps = 20/137 (14%)
Query: 19 LIPLLRNLGGEKFIVFAS--SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVE------ 70
L L++ GG F+S +TLK F +G +Q+LV +DA G+DV+
Sbjct: 544 LFLLVQAFGGVSVAEFSSRHGPGQRKRTLKKFE-QGKIQLLVSTDATARGIDVQGVELVL 602
Query: 71 ---RAAYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCP 127
Y +TY+HR G ARAG+ G FTLL + Q +RF ++L A
Sbjct: 603 NYDAPQYARTYVHRVGRTARAGRAGQAFTLLLR--------VQERRFLRMLAGAGVLELR 654
Query: 128 VHSIPSSSIESLRPIYK 144
H IP ++ L P Y+
Sbjct: 655 RHEIPGELLQPLVPCYE 671
>gi|403292279|ref|XP_003945289.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX51,
partial [Saimiri boliviensis boliviensis]
Length = 553
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 47/187 (25%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKT---LKAFRG---------------- 50
C KP+ ++ L+ +G + + F +S NS + ++AF G
Sbjct: 373 CSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGGVDVAEFSSRYGPGQRK 432
Query: 51 -------KGHMQVLVCSDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQNGHC 94
+G +Q+L+ +DA G+DV+ Y++TY+HR G ARAG+ G
Sbjct: 433 AILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQA 492
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYK---SEYVES- 150
FTLL + Q +RF ++L ++ H + S ++ L P Y+ S+ ES
Sbjct: 493 FTLLLR--------VQERRFLRMLAESGAPELQRHELSSKLLQPLVPKYEEALSQLEESV 544
Query: 151 QANRKRK 157
+ RK+K
Sbjct: 545 KEERKQK 551
>gi|410976432|ref|XP_003994624.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Felis catus]
Length = 538
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 43/170 (25%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKT---LKAFRG---------------- 50
C + KP+ ++ L+ + + + F +S NS + ++AF G
Sbjct: 358 CSLRTKPLVILHLILEMNFSRVLCFTNSRENSHRLFLLVQAFGGVTAAEFSSRCGPGQRK 417
Query: 51 -------KGHMQVLVCSDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQNGHC 94
+G +++L+ +DA G+D++ Y++TY+HR G ARAG+ G
Sbjct: 418 AVLKQFEQGKIRLLISTDATARGIDMQGVQLVVNYDAPQYLRTYVHRVGRTARAGRTGRA 477
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYK 144
FTLL K Q +RF ++L +A H IP + L P Y+
Sbjct: 478 FTLLLK--------VQERRFLRMLAEAGAPELARHDIPGELLRPLVPRYE 519
>gi|348537210|ref|XP_003456088.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Oreochromis
niloticus]
Length = 621
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 12/102 (11%)
Query: 22 LLRNLGGEKFIVFASSVA--NSPKTLKAFRGKGHMQVLVCSDAMTSGMDV---------E 70
LL+ GG + F+S ++ + KTLK F +G +Q+L+ +DA+ G+D+ +
Sbjct: 481 LLQLFGGVQAAEFSSQLSPGDRKKTLKEFE-QGKIQLLISTDAVARGIDISGVKCVVNYD 539
Query: 71 RAAYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVK 112
YI+TYIHR G ARAG+ G FT L + ++K VK
Sbjct: 540 APQYIRTYIHRVGRTARAGKTGLAFTFLLRVQEKNFLQMVVK 581
>gi|410914978|ref|XP_003970964.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Takifugu
rubripes]
Length = 596
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 23/171 (13%)
Query: 1 MSVNLSPQIC--ESKLKPIYLIPLLRNLGGEKFIVFAS--SVANSPKTLKAFRGKGHMQV 56
+ + LSP +C S+ L L++ GG + F+S S A +TLK F+ +G +Q+
Sbjct: 433 LRLKLSPILCFTNSREAAHRLYLLVQLFGGVQAAEFSSRLSPAERKQTLKDFQ-QGKIQL 491
Query: 57 LVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLY 107
L+ +DA G+DV + Y++TYIHR G ARAG++G FT L
Sbjct: 492 LISTDATARGIDVSGVKCVVNYDAPQYVRTYIHRVGRTARAGKSGLAFT--------FLL 543
Query: 108 MFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVE-SQANRKRK 157
Q K+F K++ A + S S++ + Y+ E +QA + K
Sbjct: 544 GVQEKKFLKMVMDAGSPGIQKQIVKSESLKGMEGRYERALQELAQAIKDEK 594
>gi|12845167|dbj|BAB26644.1| unnamed protein product [Mus musculus]
Length = 165
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 22/140 (15%)
Query: 17 IYLIPLLRNLGGEKFIVFASSVA--NSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAA- 73
+YL L + GG F+S K LK F +G +Q+L+ +DA G+DV+
Sbjct: 19 LYL--LAQAFGGVSVAEFSSRYGPGQRKKILKQFE-QGKIQLLISTDATARGIDVQGVEL 75
Query: 74 --------YIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDS 125
Y++TY+HR G ARAG+ G FTLL K Q ++F +++ +A
Sbjct: 76 VINYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLK--------VQERKFLQMVSEAGVPE 127
Query: 126 CPVHSIPSSSIESLRPIYKS 145
H IP ++ L Y++
Sbjct: 128 LTHHEIPRKLLQPLVARYET 147
>gi|158286571|ref|XP_308815.4| AGAP006941-PA [Anopheles gambiae str. PEST]
gi|157020531|gb|EAA04138.4| AGAP006941-PA [Anopheles gambiae str. PEST]
Length = 655
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 65/151 (43%), Gaps = 45/151 (29%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANS-------------------------PK 43
+ E + KP+ L L+R G KF+VF + + S P
Sbjct: 455 LTEQRSKPLTLYGLIRENGYRKFLVFTNGINTSHRLSFVLQRLFGTDMVIEEWSSSLSPA 514
Query: 44 TLKAFRGK---GHMQVLVCSDAMTSGMDVERAA---------YIKTYIHRAGPRARAGQN 91
T K+ + G + ++C+DA+ G+D+E +I YIHR G ARAG
Sbjct: 515 TRKSVLNRFSLGKVNGIICTDALARGIDIENIEVVISYDMPNHIDKYIHRIGRTARAGLR 574
Query: 92 GHCFTLLPKDEDKLLYMFQVKRFKKLLQQAD 122
G TLL +DE K+F LL++A+
Sbjct: 575 GTAITLLAEDEK--------KKFNALLKEAN 597
>gi|224072122|ref|XP_002196880.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Taeniopygia
guttata]
Length = 707
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 20/137 (14%)
Query: 19 LIPLLRNLGGEKFIVFASSVA--NSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAY-- 74
L L++ GG F+S + +T+K F +G +Q+L+ +DA G+DV+R Y
Sbjct: 561 LFLLVQAFGGITVAEFSSRLTPNERKRTMKEFE-QGKIQLLISTDATARGIDVKRVNYVI 619
Query: 75 -------IKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCP 127
I+TY+HR G ARAG+ G F+ L+ Q +RF ++L+ A
Sbjct: 620 NYDAPQFIRTYVHRVGRTARAGEAGVAFS--------LVLRIQERRFLRMLRDAGIRDIK 671
Query: 128 VHSIPSSSIESLRPIYK 144
H + +S++ L Y+
Sbjct: 672 KHPVKGNSLKPLVQQYE 688
>gi|417411466|gb|JAA52168.1| Putative atp-dependent rna helicase, partial [Desmodus rotundus]
Length = 535
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 20/138 (14%)
Query: 19 LIPLLRNLGGEKFIVFASSVANSPKT--LKAFRGKGHMQVLVCSDAMTSGMDV------- 69
L L++ GG F+S + LK F +G +Q+L+ +DA G+DV
Sbjct: 389 LFLLVQAFGGVAVAEFSSRYGPGWRKMILKQFE-QGKIQLLISTDATARGIDVRGVQLVV 447
Query: 70 --ERAAYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCP 127
+ Y++TY+HR G ARAG+ G FTLL K Q ++F ++L +A
Sbjct: 448 NYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLK--------VQERKFLRMLTEAGAPELQ 499
Query: 128 VHSIPSSSIESLRPIYKS 145
H P+ ++ L P Y++
Sbjct: 500 RHDAPTELLQPLVPRYEA 517
>gi|51467974|ref|NP_001003864.1| ATP-dependent RNA helicase DDX51 [Danio rerio]
gi|82200454|sp|Q6DRI7.1|DDX51_DANRE RecName: Full=ATP-dependent RNA helicase DDX51; AltName: Full=DEAD
box protein 51
gi|49619011|gb|AAT68090.1| DEAD/H box 51 RNA helicase [Danio rerio]
Length = 652
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 26/164 (15%)
Query: 1 MSVNLSPQICESKLKP----IYLIPLLRNLGGEKFIVFAS--SVANSPKTLKAFRGKGHM 54
+ + SP +C + + +YL L++ GG + F+S S KTLK F KG +
Sbjct: 486 LRLKFSPALCFTNSREGAHRLYL--LVKLFGGVEVAEFSSKLSPGERQKTLKDFE-KGKI 542
Query: 55 QVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKL 105
+L+ +DA G+D+ + YI+TYIHR G ARAG+ G FT L K
Sbjct: 543 PLLISTDAAARGIDINGVKCVINYDAPQYIRTYIHRVGRTARAGKAGLAFTFLLK----- 597
Query: 106 LYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVE 149
Q KRF K++ A + +++S+ Y+ E
Sbjct: 598 ---VQEKRFLKMVSDAGSPGIQKQHVHPEALKSMESRYEQVLAE 638
>gi|354479142|ref|XP_003501772.1| PREDICTED: ATP-dependent RNA helicase DDX51, partial [Cricetulus
griseus]
Length = 552
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 1 MSVNLSPQIC--ESKLKPIYLIPLLRNLGGEKFIVFAS--SVANSPKTLKAFRGKGHMQV 56
+ +N S +C S+ L L + GG F+S K LK F +G +Q+
Sbjct: 386 LGMNFSRALCFTNSREHSHRLFLLAQAFGGVSVAEFSSRYGPGQRKKILKQFE-QGKIQL 444
Query: 57 LVCSDAMTSGMDVERAA---------YIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLY 107
L+ +DA G+DV+ Y++TY+HR G ARAG+ G FTLL K
Sbjct: 445 LISTDATARGIDVQGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLK------- 497
Query: 108 MFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQANRKRKIGFKL 162
Q ++F +++ +A H IP ++ L + + E SQ + K KL
Sbjct: 498 -VQERKFLQMVSEAGVPELACHEIPRELLQPL--VSRYEIALSQLEKTVKEEQKL 549
>gi|47682722|gb|AAH69876.1| Ddx51 protein, partial [Mus musculus]
Length = 260
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 22/140 (15%)
Query: 17 IYLIPLLRNLGGEKFIVFASSVA--NSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAA- 73
+YL L + GG F+S K LK F +G +Q+L+ +DA G+DV+
Sbjct: 114 LYL--LAQAFGGVSVAEFSSRYGPGQRKKILKQFE-QGKIQLLISTDATARGIDVQGVEL 170
Query: 74 --------YIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDS 125
Y++TY+HR G ARAG+ G FTLL K Q ++F +++ +A
Sbjct: 171 VINYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLK--------VQERKFLQMVSEAGVPE 222
Query: 126 CPVHSIPSSSIESLRPIYKS 145
H IP ++ L Y++
Sbjct: 223 LTHHEIPRKLLQPLVARYET 242
>gi|189217546|ref|NP_001121235.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Xenopus laevis]
gi|169642008|gb|AAI60740.1| LOC100158308 protein [Xenopus laevis]
Length = 678
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 14/99 (14%)
Query: 17 IYLIPLLRNLGGEKFIVFAS--SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDV----- 69
+YL L+R+ GG F+S S +TLK F +G +Q+LV +DA G+D+
Sbjct: 532 LYL--LIRSFGGIDVAEFSSRLSPGERKRTLKEFE-QGKVQLLVSTDATARGIDIKGVKC 588
Query: 70 ----ERAAYIKTYIHRAGPRARAGQNGHCFTLLPKDEDK 104
+ +I+TY+HR G ARAG+ G FT+L K ++K
Sbjct: 589 IINYDAPQFIRTYVHRVGRTARAGKAGLAFTMLLKVQEK 627
>gi|395332279|gb|EJF64658.1| DEAD-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 694
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 53/181 (29%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFR--------GKGH------- 53
+CES +KP+ L L+ G +VF S ++ + ++ F +G
Sbjct: 508 VCESSVKPLMLFHLVHARGVTNALVFTKSAESTARLVRLFEFFESAHSDSQGRRIVARAY 567
Query: 54 --------------------MQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGP 84
+Q+LVCSD ++ G+D+ +++ + Y+HR G
Sbjct: 568 SSDLAPGERKSILEQFKSQDVQLLVCSDLISRGIDISHVSHVVSYDVPVDFRKYVHRVGR 627
Query: 85 RARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH-DSCPVHSIPSSSIESLRPIY 143
ARAG+ G +TL+ + E + FK +L++ADH D + + +E L+P Y
Sbjct: 628 TARAGRAGDAWTLVEEQE--------ARYFKTMLKEADHLDKVKRVRVADADVEPLKPAY 679
Query: 144 K 144
+
Sbjct: 680 E 680
>gi|303273266|ref|XP_003055994.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462078|gb|EEH59370.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 526
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 65/152 (42%), Gaps = 47/152 (30%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANSPK------------------------- 43
+ E+ KP+ L LL+ +G IVF SSVA + +
Sbjct: 313 VTEAIKKPLALCALLKRIGRVPVIVFTSSVAITHRLFLLLDSIKGLPSSAVEYSSSFSQG 372
Query: 44 ----TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQ 90
L +FR G Q+LV SDA T G+D++ A + TYIHR G ARAGQ
Sbjct: 373 VRSAALDSFR-SGSKQLLVASDAATRGLDIKHVAAVISYDVPLHQNTYIHRVGRTARAGQ 431
Query: 91 NGHCFTLLPKDEDKLLYMFQVKRFKKLLQQAD 122
G +T+ E +RF+ +L + D
Sbjct: 432 KGTAYTICRSSE--------TQRFRNILTKVD 455
>gi|340507841|gb|EGR33722.1| hypothetical protein IMG5_042580 [Ichthyophthirius multifiliis]
Length = 729
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 46/152 (30%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANSP-------------------------- 42
+C + KPIYL ++ GE FI+F +S++ S
Sbjct: 474 VCIEEDKPIYLYDYIKKRCGESFIIFNNSISYSKKILHLLTILGFKCLGLHSEMQQRQRL 533
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAGQNGH 93
K L F+ K + Q+LVC+D G+D+ I T+IHR+G AR G+ G
Sbjct: 534 KKLDQFKSKQY-QILVCTDIAARGLDIPTVQNVINYQIPLDIDTFIHRSGRTARIGKVGT 592
Query: 94 CFTLL-PKDEDKLLYMFQVKRFKKLLQQADHD 124
C++L+ PKD +R++KL+ Q D
Sbjct: 593 CYSLVGPKDG---------QRYQKLITQLQKD 615
>gi|213511024|ref|NP_001133236.1| ATP-dependent RNA helicase DDX51 [Salmo salar]
gi|209147204|gb|ACI32879.1| ATP-dependent RNA helicase DDX51 [Salmo salar]
Length = 678
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 22/162 (13%)
Query: 1 MSVNLSPQIC--ESKLKPIYLIPLLRNLGGEKFIVFASSVANSPK--TLKAFRGKGHMQV 56
+ + SP +C S+ L L++ GG + F+S ++ + + TLK F +G +Q+
Sbjct: 512 LRLKFSPILCFTNSREATHRLFLLVQLFGGVQAAEFSSRLSPNERMRTLKEFE-QGKIQL 570
Query: 57 LVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLY 107
L+ +DA G+D+ + +I+TYIHR G ARAG++G FT L
Sbjct: 571 LISTDAAARGIDINGVKCVVNYDAPQFIRTYIHRVGRTARAGKSGLAFT--------FLL 622
Query: 108 MFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVE 149
Q K+F ++++ A + +++S+ P Y+ +E
Sbjct: 623 GVQEKKFLQMVKDAGSPGIHKQIVMPGNLKSMEPRYEQTLLE 664
>gi|344246330|gb|EGW02434.1| ATP-dependent RNA helicase DDX51 [Cricetulus griseus]
Length = 605
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 1 MSVNLSPQIC--ESKLKPIYLIPLLRNLGGEKFIVFAS--SVANSPKTLKAFRGKGHMQV 56
+ +N S +C S+ L L + GG F+S K LK F +G +Q+
Sbjct: 439 LGMNFSRALCFTNSREHSHRLFLLAQAFGGVSVAEFSSRYGPGQRKKILKQFE-QGKIQL 497
Query: 57 LVCSDAMTSGMDVERAA---------YIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLY 107
L+ +DA G+DV+ Y++TY+HR G ARAG+ G FTLL K
Sbjct: 498 LISTDATARGIDVQGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLK------- 550
Query: 108 MFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQANRKRKIGFKL 162
Q ++F +++ +A H IP ++ L + + E SQ + K KL
Sbjct: 551 -VQERKFLQMVSEAGVPELACHEIPRELLQPL--VSRYEIALSQLEKTVKEEQKL 602
>gi|387592705|gb|EIJ87729.1| hypothetical protein NEQG_02276 [Nematocida parisii ERTm3]
gi|387595334|gb|EIJ92959.1| hypothetical protein NEPG_02358 [Nematocida parisii ERTm1]
Length = 427
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 80/192 (41%), Gaps = 46/192 (23%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPK--------------------------TLK 46
K K +YL ++R+LG K IVF + + K T++
Sbjct: 229 KYKEVYLYSIIRSLGSRKCIVFVKTCITAEKIERMLRSLDESVCSIHGNKSQEVRTETIE 288
Query: 47 AFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
FR +G VL+ +D + GMD+E I K YIHR G RAG+ G TL
Sbjct: 289 MFR-RGRYSVLISTDVVARGMDMEGIKIIINYDMPDGHKEYIHRIGRTGRAGETGSSITL 347
Query: 98 LPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQANRKRK 157
+ + + V+ F+KL + D +SI S I SL E+ + K +
Sbjct: 348 VTQ--------YDVEEFRKLEVKLDL-KMDEYSISSDLIYSLSDSVDHAKKEAAVDMKEE 398
Query: 158 -IGFKLSRMVKG 168
IG K+ + KG
Sbjct: 399 GIGKKIKEVKKG 410
>gi|325287731|ref|YP_004263521.1| DEAD/DEAH box helicase [Cellulophaga lytica DSM 7489]
gi|324323185|gb|ADY30650.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM
7489]
Length = 445
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 16/84 (19%)
Query: 48 FRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
FR +GH+++LV +D G+DV+ Y+ +TY+HR+G ARAG +G T+L
Sbjct: 289 FR-EGHIKILVATDLAARGLDVKEITYVVNYHLPDVYETYVHRSGRTARAGADGFSLTIL 347
Query: 99 PKDEDKLLYMFQ------VKRFKK 116
K+E++ + F+ K+FKK
Sbjct: 348 QKEEEQDIAEFENELGITFKKFKK 371
>gi|198463449|ref|XP_001352828.2| GA21960 [Drosophila pseudoobscura pseudoobscura]
gi|198151259|gb|EAL30329.2| GA21960 [Drosophila pseudoobscura pseudoobscura]
Length = 697
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 47/159 (29%), Positives = 68/159 (42%), Gaps = 50/159 (31%)
Query: 3 VNLSPQIC--ESKLKPIYLIPLLRNLGGEKFIVFASSVANS------------------- 41
V L+ Q C E ++KP+ L L+ ++F+ F +S +
Sbjct: 422 VELTEQFCVTELRIKPLTLFALVEKYQWKRFLCFTNSTETANRLAFVMGKLFSTGPTKVA 481
Query: 42 -----------PKTLKAFRGKGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHR 81
KTL F +G + L+CSDA+ G+DV E +IKTYIHR
Sbjct: 482 ELSGKLSALVRTKTLSDF-ARGRINGLICSDALARGIDVADVDVVLSYETPRHIKTYIHR 540
Query: 82 AGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQ 120
G ARAG+ G TLL + E +FKK+L +
Sbjct: 541 VGRTARAGRKGTAVTLLTEQEQ--------AQFKKMLNE 571
>gi|392594884|gb|EIW84208.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 620
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 68/163 (41%), Gaps = 57/163 (34%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANSPK------------------------- 43
ICE KP+ L LL+N + ++F S ++ +
Sbjct: 433 ICEPSQKPLMLFYLLQNRSVDNALIFTKSSESTSRLVRLFEHFATFKQSGAASEDDKLVI 492
Query: 44 --------------TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIH 80
L+ F+ K + +LVCSD ++ G+D+ A++ + Y+H
Sbjct: 493 QAYSSDLPAGERKRILEKFKAK-EVHLLVCSDLVSRGIDISHVAHVVSYDAPVDMRKYVH 551
Query: 81 RAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123
R G ARAG+ GH +TL+ + E + FK +L+ ADH
Sbjct: 552 RVGRTARAGREGHAWTLVEEQE--------ARYFKTMLKTADH 586
>gi|195127527|ref|XP_002008220.1| GI11933 [Drosophila mojavensis]
gi|193919829|gb|EDW18696.1| GI11933 [Drosophila mojavensis]
Length = 670
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 69/155 (44%), Gaps = 48/155 (30%)
Query: 4 NLSPQIC--ESKLKPIYLIPLLRNLGGEKFIVFASS--VAN------------------- 40
L+ Q C E +LKP+ L ++ ++F+ F +S AN
Sbjct: 421 ELTEQYCVTEMRLKPLTLYAMVLLNNWKRFLCFTNSADTANRLACVLVHLFKDSTIRVKE 480
Query: 41 -SPKTLKAFRG-------KGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAG 83
S K RG +G++ LVCSDA+ G+DV E +IKTYIHR G
Sbjct: 481 LSAKMSATKRGHRLSEFARGNIHGLVCSDALARGIDVPNVDVVVSYEAPRHIKTYIHRVG 540
Query: 84 PRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLL 118
ARAGQ G TLL D+D+ FKK+L
Sbjct: 541 RTARAGQKGTAITLL-TDKDQ-------ANFKKML 567
>gi|312376445|gb|EFR23526.1| hypothetical protein AND_12724 [Anopheles darlingi]
Length = 749
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 45/162 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANS-------------------------PKTLKA 47
++KP+ L L+R G KF+VF + + S P T ++
Sbjct: 444 RIKPLTLFALIRQAGYRKFLVFTNGIDGSHRLSFVLQRLFGTEMVIEEWSSSLTPATRRS 503
Query: 48 FRGK---GHMQVLVCSDAMTSGMDVERAA---------YIKTYIHRAGPRARAGQNGHCF 95
+ G + ++C+DA+ G D++ +I TYIHR G ARAG G
Sbjct: 504 VLHRFSLGKVNGIICTDALARGFDIDDIEIVVSYDMPRHISTYIHRIGRTARAGNRGTSI 563
Query: 96 TLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIE 137
TLL DE+K K+F +L++A + I SS E
Sbjct: 564 TLLI-DEEK-------KKFNSMLKEAGKEELEAVEIQSSVEE 597
>gi|392573109|gb|EIW66250.1| hypothetical protein TREMEDRAFT_35235, partial [Tremella
mesenterica DSM 1558]
Length = 694
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 18/94 (19%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A K L AF G+G +Q+LVCSD + GMD+ +++ + Y+HR G ARAG
Sbjct: 570 AERKKLLAAF-GQGDVQLLVCSDLIARGMDLPTVSHVISYDIPLDMRKYVHRVGRTARAG 628
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123
++G +TL+ K E FK +L+ A H
Sbjct: 629 RSGTAWTLVEKQE--------ALHFKSILKSAGH 654
>gi|336383556|gb|EGO24705.1| hypothetical protein SERLADRAFT_369949 [Serpula lacrymans var.
lacrymans S7.9]
Length = 651
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 18/96 (18%)
Query: 37 SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRAR 87
SV L+ F+ + +Q+LVCSD ++ GMD+ +++ + Y+HR G AR
Sbjct: 541 SVGERRGILEKFKAE-EIQILVCSDLISRGMDMSHVSHVVSYDVPVDMRKYVHRVGRTAR 599
Query: 88 AGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123
AG+ G +TL+ + E + FK++L +ADH
Sbjct: 600 AGREGDAWTLVEEQE--------ARYFKRMLSEADH 627
>gi|195376467|ref|XP_002047018.1| GJ12159 [Drosophila virilis]
gi|194154176|gb|EDW69360.1| GJ12159 [Drosophila virilis]
Length = 680
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 69/156 (44%), Gaps = 48/156 (30%)
Query: 3 VNLSPQIC--ESKLKPIYLIPLLRNLGGEKFIVFASS--VAN------------SPKTLK 46
L+ Q C E +LKP+ L ++ G ++F+ F +S AN SP ++
Sbjct: 425 AELTEQYCLTEMRLKPLTLYAMVLLNGWKRFLCFTNSADTANRLAFVLQQLFGGSPTRVE 484
Query: 47 AFRGK---------------GHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRA 82
K G + L+CSDA+ G+DV E +IKTYIHR
Sbjct: 485 ELSAKMSAAMRAQRLTEFARGSIHGLICSDALARGIDVPNVDIVVSYEAPRHIKTYIHRV 544
Query: 83 GPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLL 118
G ARAG G TLL D+D+ +FKK+L
Sbjct: 545 GRTARAGHKGTAITLL-TDKDQ-------AQFKKML 572
>gi|301604620|ref|XP_002931939.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Xenopus (Silurana)
tropicalis]
Length = 660
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 55/98 (56%), Gaps = 14/98 (14%)
Query: 17 IYLIPLLRNLGGEKFIVFAS--SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDV----- 69
+YL L+R+ GG F+S S KTLK F +G +Q+L+ +DA G+D+
Sbjct: 514 LYL--LVRSFGGISVAEFSSRLSPGERKKTLKEFE-QGKVQLLISTDATARGIDIKGVKC 570
Query: 70 ----ERAAYIKTYIHRAGPRARAGQNGHCFTLLPKDED 103
+ +I+TY+HR G ARAG+ G FT+L K ++
Sbjct: 571 VINYDAPQFIRTYVHRVGRTARAGKAGLAFTMLLKVQE 608
>gi|395840150|ref|XP_003792928.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Otolemur garnettii]
Length = 665
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 22/150 (14%)
Query: 19 LIPLLRNLGGEKFIVFASSVANSPKT--LKAFRGKGHMQVLVCSDAMTSGMDVE------ 70
L L++ GG F+S + LK F +G +Q+L+ +DA G+DV+
Sbjct: 519 LFLLVQAFGGVSVAEFSSRYGPGQRKMILKQFE-QGKIQLLISTDATARGIDVQGVELVI 577
Query: 71 ---RAAYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCP 127
Y++TY+HR G ARAG G FTLL K Q +RF ++L + +
Sbjct: 578 NYDAPQYLRTYVHRVGRTARAGNAGQAFTLLLK--------VQERRFLRMLTEGGVPALQ 629
Query: 128 VHSIPSSSIESLRPIYKSEYVESQANRKRK 157
H + S ++ L P Y E SQ R K
Sbjct: 630 RHELLSELLQPLVPRY--EEALSQLERTVK 657
>gi|432947382|ref|XP_004084018.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Oryzias latipes]
Length = 632
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 22/173 (12%)
Query: 1 MSVNLSPQIC--ESKLKPIYLIPLLRNLGGEKFIVFASSVANSPK--TLKAFRGKGHMQV 56
+ + L P +C S+ L L++ GG + F+S ++ + + TLK F +G +Q+
Sbjct: 459 LRMKLHPILCFTNSRETAHRLYLLVQLFGGVQAAEFSSRLSPNERKRTLKEF-DQGKIQL 517
Query: 57 LVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLY 107
L+ +DA G+D+ + +I+ YIHR G ARAG++G FT L +
Sbjct: 518 LISTDAAARGIDIPGVKCVVNYDAPQFIRMYIHRVGRTARAGKSGLAFTFLLR------- 570
Query: 108 MFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQANRKRKIGF 160
Q KRF +++Q+A + S++S+ Y+ E K +G
Sbjct: 571 -VQEKRFLQMVQEAGSPGLQKQIVKPESLKSMEERYEGTLQELAGVVKVTVGL 622
>gi|74220751|dbj|BAE31347.1| unnamed protein product [Mus musculus]
Length = 639
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 20/151 (13%)
Query: 22 LLRNLGGEKFIVFASSVA--NSPKTLKAFRGKGHMQVLVCSDAMTSGMDVE--------- 70
L + GG F+S K LK F +G +Q+L+ +DA G+DV+
Sbjct: 496 LAQAFGGVSVAEFSSRYGPGQRKKILKQFE-QGKIQLLISTDATARGIDVQGVELVINYD 554
Query: 71 RAAYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHS 130
Y++TY+HR G ARAG+ G FTLL K Q ++F +++ +A H
Sbjct: 555 APQYLRTYVHRVGRTARAGKTGQAFTLLLK--------VQERKFLQMVSEAGVPELTHHE 606
Query: 131 IPSSSIESLRPIYKSEYVESQANRKRKIGFK 161
IP ++ L Y++ + + K + K
Sbjct: 607 IPRKLLQPLVARYETALSQLEKTVKEEQKLK 637
>gi|40538825|ref|NP_081432.2| ATP-dependent RNA helicase DDX51 [Mus musculus]
gi|81892367|sp|Q6P9R1.1|DDX51_MOUSE RecName: Full=ATP-dependent RNA helicase DDX51; AltName: Full=DEAD
box protein 51
gi|38614333|gb|AAH60646.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Mus musculus]
Length = 639
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 20/151 (13%)
Query: 22 LLRNLGGEKFIVFASSVA--NSPKTLKAFRGKGHMQVLVCSDAMTSGMDVE--------- 70
L + GG F+S K LK F +G +Q+L+ +DA G+DV+
Sbjct: 496 LAQAFGGVSVAEFSSRYGPGQRKKILKQFE-QGKIQLLISTDATARGIDVQGVELVINYD 554
Query: 71 RAAYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHS 130
Y++TY+HR G ARAG+ G FTLL K Q ++F +++ +A H
Sbjct: 555 APQYLRTYVHRVGRTARAGKTGQAFTLLLK--------VQERKFLQMVSEAGVPELTHHE 606
Query: 131 IPSSSIESLRPIYKSEYVESQANRKRKIGFK 161
IP ++ L Y++ + + K + K
Sbjct: 607 IPRKLLQPLVARYETALSQLEKTVKEEQKLK 637
>gi|148688064|gb|EDL20011.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Mus musculus]
Length = 639
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 20/151 (13%)
Query: 22 LLRNLGGEKFIVFASSVA--NSPKTLKAFRGKGHMQVLVCSDAMTSGMDVE--------- 70
L + GG F+S K LK F +G +Q+L+ +DA G+DV+
Sbjct: 496 LAQAFGGVSVAEFSSRYGPGQRKKILKQFE-QGKIQLLISTDATARGIDVQGVELVINYD 554
Query: 71 RAAYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHS 130
Y++TY+HR G ARAG+ G FTLL K Q ++F +++ +A H
Sbjct: 555 APQYLRTYVHRVGRTARAGKTGQAFTLLLK--------VQERKFLQMVSEAGVPELTHHE 606
Query: 131 IPSSSIESLRPIYKSEYVESQANRKRKIGFK 161
IP ++ L Y++ + + K + K
Sbjct: 607 IPRKLLQPLVARYETALSQLEKTVKEEQKLK 637
>gi|449663831|ref|XP_002165436.2| PREDICTED: ATP-dependent RNA helicase DDX51-like [Hydra
magnipapillata]
Length = 734
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 22 LLRNLGGEKFIVFASSVANSPK--TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---- 75
LL+++GG F+S++ + + ++ F+ G + L+ SDAM GMD++ +
Sbjct: 518 LLQSIGGFTVAEFSSNLTETQRKGIIRDFKN-GSIDALISSDAMARGMDIDNVNMVVNYD 576
Query: 76 -----KTYIHRAGPRARAGQNGHCFTLLPK 100
KTY+HR G ARAG G T+L K
Sbjct: 577 SPANSKTYVHRVGRTARAGNRGEALTILTK 606
>gi|302683871|ref|XP_003031616.1| hypothetical protein SCHCODRAFT_55946 [Schizophyllum commune H4-8]
gi|300105309|gb|EFI96713.1| hypothetical protein SCHCODRAFT_55946 [Schizophyllum commune H4-8]
Length = 566
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 29/139 (20%)
Query: 15 KPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAY 74
+P+ + +LGG A L+ FR K +Q+LV SD ++ G+DV ++
Sbjct: 443 RPVTISAYSSDLGG----------AERRAILERFR-KQEIQILVASDLISRGLDVSHVSH 491
Query: 75 I---------KTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH-D 124
+ + Y+HR G ARAG+ G +TL+ + E + FK ++++ADH
Sbjct: 492 VVSYDAPVDVRKYVHRVGRTARAGRAGSAWTLVEEQE--------ARYFKNMMKEADHLP 543
Query: 125 SCPVHSIPSSSIESLRPIY 143
S + +E LRP+Y
Sbjct: 544 SLKKVKVDRKEMEELRPLY 562
>gi|60416850|emb|CAI59782.1| hypothetical protein [Homo sapiens]
Length = 268
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 44/171 (25%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKT---LKAFRG---------------- 50
C KP+ ++ L+ +G + + F +S NS + ++AF G
Sbjct: 87 CSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGGVDVAEFSSRYGPGQRR 146
Query: 51 -------KGHMQVLVCSDAMTSGMDVERAA---------YIKTYIHR-AGPRARAGQNGH 93
+G +Q+L+ +DA G+DV+ Y++TY+HR G ARAG+ G
Sbjct: 147 MILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRRVGRTARAGKTGQ 206
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYK 144
FTLL K Q +R ++L +A H + S ++ L P Y+
Sbjct: 207 AFTLLLK--------VQERRLLRMLTEAGAPELQRHELSSKLLQPLVPRYE 249
>gi|357628805|gb|EHJ77980.1| putative ATP-dependent RNA helicase DDX51 [Danaus plexippus]
Length = 625
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 24/139 (17%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAGQNGHCF 95
L+ F+ + + V++C+DA+ G+D+ Y IKTY+HR G RAG+ G+
Sbjct: 477 LRKFK-QSEINVIICTDALARGIDIPDCNYVISYDPPRNIKTYVHRVGRTGRAGRIGNAV 535
Query: 96 TLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS------EYVE 149
T++ + QV+ FK +LQ P + + ++ L P Y++ + ++
Sbjct: 536 TIIVHN--------QVQMFKDILQSGGKSDIPQLEMQNDILQDLMPGYQNAIRETKQSID 587
Query: 150 SQANRKRKIGFKLSRMVKG 168
++ + K K +L RM K
Sbjct: 588 NEIHDKVKKSKELKRMSKS 606
>gi|291225370|ref|XP_002732681.1| PREDICTED: dead box protein 73D-like [Saccoglossus kowalevskii]
Length = 703
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 17/98 (17%)
Query: 57 LVCSDAMTSGMDVERAA---------YIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLY 107
L+CSDAM GMD+ A +IKTYIHR G AR + G +TL+ DK
Sbjct: 541 LICSDAMARGMDIVEANAVICYDVPPFIKTYIHRIGRTARGDRQGTAYTLVL---DK--- 594
Query: 108 MFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS 145
Q K+F +L++A ++C + +E+L Y++
Sbjct: 595 --QKKKFTAMLREAGKENCEWMKVKRKLLETLTESYEN 630
>gi|345314845|ref|XP_001512662.2| PREDICTED: ATP-dependent RNA helicase DDX51, partial
[Ornithorhynchus anatinus]
Length = 652
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 20/148 (13%)
Query: 19 LIPLLRNLGGEKFIVFASSVANSPKTL--KAFRGKGHMQVLVCSDAMTSGMDVERAA--- 73
L L++ GG K F+S + L K F +G +Q+L+ +DA G+DVE
Sbjct: 514 LFLLIQAFGGVKVAEFSSRFGPGQRKLILKQFE-QGKIQLLISTDATARGIDVEGVKLVI 572
Query: 74 ------YIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCP 127
YI++Y+HR G ARAG+ G +T L K Q ++F ++L++A +
Sbjct: 573 NYDAPHYIRSYVHRVGRTARAGRTGLAYTFLLK--------VQEQKFLRMLREAGAPALQ 624
Query: 128 VHSIPSSSIESLRPIYKSEYVESQANRK 155
+ I +E L P Y++ Q K
Sbjct: 625 PYPIRRELLEPLVPQYQAALATLQETIK 652
>gi|194872386|ref|XP_001973017.1| GG15853 [Drosophila erecta]
gi|190654800|gb|EDV52043.1| GG15853 [Drosophila erecta]
Length = 687
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 72/176 (40%), Gaps = 51/176 (28%)
Query: 4 NLSPQIC--ESKLKPIYLIPLLRNLGGEKFIVFASSVANSPK------------------ 43
L+ Q C E +LKP+ + L+ ++F+ F +S + +
Sbjct: 418 ELTEQYCVTELRLKPLTVFALVEKYKWKRFLCFTNSSDQASRLTFVLKVLFKKYSTIVSE 477
Query: 44 ------------TLKAFRGKGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRA 82
LK F G + L+CSDA+ G+DV E +I TYIHR
Sbjct: 478 LSGNLSARVRKEKLKDFSA-GKINGLICSDALARGIDVADVDVVLSYETPRHITTYIHRV 536
Query: 83 GPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHD-SCPVHSIPSSSIE 137
G ARAG+ G TLL + + L FKK+L AD + +H P I+
Sbjct: 537 GRTARAGRKGTAVTLLTEQDMAL--------FKKILSDADKELGEEIHVSPDIEIQ 584
>gi|409048731|gb|EKM58209.1| hypothetical protein PHACADRAFT_171465 [Phanerochaete carnosa
HHB-10118-sp]
Length = 681
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 55/162 (33%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAF-------------RGKG--- 52
+CES KP+ L L+ G + +VF S ++ + +K F +G
Sbjct: 494 VCESSQKPLVLFHLVHTHGVKNALVFTKSAESTARLVKLFEFFELSRISSTEQQGSAIVL 553
Query: 53 ----------------------HMQVLVCSDAMTSGMDVERAAYI---------KTYIHR 81
+LVCSD ++ G+D+ +++ + Y+HR
Sbjct: 554 SAYSSDLAPSARKEILDKFKNQETHILVCSDLISRGIDISHVSHVVSYDAPVDMRKYVHR 613
Query: 82 AGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123
G ARAG+ G +TL+ + E + FK +L++A+H
Sbjct: 614 VGRTARAGRTGDAWTLIEEQE--------ARHFKNMLKEANH 647
>gi|146300600|ref|YP_001195191.1| DEAD/DEAH box helicase [Flavobacterium johnsoniae UW101]
gi|146155018|gb|ABQ05872.1| DEAD/DEAH box helicase domain protein [Flavobacterium johnsoniae
UW101]
Length = 444
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 15/85 (17%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ ++ FR +GH+ +LV +D G+DV+ +Y+ +TY+HR+G ARAG NG
Sbjct: 284 RIMEQFR-EGHINILVATDLAARGIDVKEISYVVNYHLPDAYETYVHRSGRTARAGANGL 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLL 118
T+L ++E +F++ F++ L
Sbjct: 343 SLTVLQEEE-----VFEIADFEREL 362
>gi|358255930|dbj|GAA57535.1| ATP-dependent RNA helicase DDX51/DBP6, partial [Clonorchis sinensis]
Length = 1092
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 35/123 (28%)
Query: 15 KPIYLIPLLRNLGGEKFIVFASSVANSP---------KTLKAFRGKGHM----------- 54
+ ++LI L+R+ ++ + F +S + K ++++R GHM
Sbjct: 890 RALFLIHLIRHENVKRVLCFTNSRTTAARLHMLLSNFKGIRSYRISGHMPPDKRQRVLSA 949
Query: 55 ------QVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGHCFTLLP 99
VLVC+D+M GMDV E +K Y+HR G ARAGQ G +TLL
Sbjct: 950 FTRNELDVLVCTDSMARGMDVKEVNCVVSYEMPPNVKIYVHRVGRTARAGQPGLAYTLLN 1009
Query: 100 KDE 102
K++
Sbjct: 1010 KNQ 1012
>gi|404371101|ref|ZP_10976411.1| hypothetical protein CSBG_01606 [Clostridium sp. 7_2_43FAA]
gi|404301481|gb|EEH97980.2| hypothetical protein CSBG_01606 [Clostridium sp. 7_2_43FAA]
Length = 376
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 11/89 (12%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+ FR KG + VL+ SD G+D++ ++ K Y+HRAG RAG+ G
Sbjct: 283 RALENFR-KGKINVLIASDIAARGLDIKGVTHVVNFDIPEDSKDYLHRAGRVGRAGETGE 341
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQAD 122
F+L+ E+K++ M + K FK + + D
Sbjct: 342 VFSLVDDKEEKIIKMHE-KSFKINISERD 369
>gi|398938904|ref|ZP_10668171.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM41(2012)]
gi|398164898|gb|EJM53023.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM41(2012)]
Length = 444
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 63/160 (39%), Gaps = 34/160 (21%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG----------------- 52
+ K KP I LLR ++ +VFA + ++ +G G
Sbjct: 226 VDKKRKPELFIHLLRKGKWKQVLVFAKTRNGVDALVEKLQGLGVNADGIHGDKPQATRQR 285
Query: 53 --------HMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCF 95
+Q+LV +D G+D+E + + YIHR G RAG G
Sbjct: 286 ALDRFKASEVQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGATGQAI 345
Query: 96 TLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L+ DE LL + + L +Q +HD P H +P +
Sbjct: 346 SLVCADEVNLLSAIETLTRQTLPRQMEHDFEPEHRVPDTD 385
>gi|398878830|ref|ZP_10633936.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM67]
gi|398885391|ref|ZP_10640304.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM60]
gi|398192583|gb|EJM79730.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM60]
gi|398198087|gb|EJM85052.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM67]
Length = 444
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 63/160 (39%), Gaps = 34/160 (21%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG----------------- 52
+ K KP I LLR ++ +VFA + ++ +G G
Sbjct: 226 VDKKRKPELFIHLLRKGKWKQVLVFAKTRNGVDALVEKLQGLGINADGIHGDKPQATRQR 285
Query: 53 --------HMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCF 95
+Q+LV +D G+D+E + + YIHR G RAG G
Sbjct: 286 ALDRFKASEVQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGATGQAI 345
Query: 96 TLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L+ DE LL + + L +Q +HD P H +P +
Sbjct: 346 SLVCADEVNLLSAIETLTRQTLPRQMEHDFEPEHRVPDTD 385
>gi|398996127|ref|ZP_10698989.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM21]
gi|398127663|gb|EJM17069.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM21]
Length = 445
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 63/160 (39%), Gaps = 34/160 (21%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG----------------- 52
+ K KP + LLR ++ +VFA + ++ +G G
Sbjct: 226 VDKKRKPELFVHLLRKGKWKQVLVFAKTRNGVDALVEKLQGLGINADGIHGDKPQATRQR 285
Query: 53 --------HMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCF 95
+Q+LV +D G+D+E + + YIHR G RAG G
Sbjct: 286 ALDRFKASEVQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGQAI 345
Query: 96 TLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L+ DE LL + + L +Q +HD P H +P +
Sbjct: 346 SLVCADEVNLLSAIETLTRQTLPRQMEHDFEPEHRVPDTD 385
>gi|441477761|dbj|BAM75193.1| vasa-like gene-2, partial [Pinctada fucata]
Length = 451
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
+K K +YL+ +L L G F+VF S+ AN+ +T R G H Q
Sbjct: 245 AKFKDVYLVSVLNELAGNSFMVFTSTCANTQRTALMLRNLGLTAIPLHGQMSQSKRLGSL 304
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 305 NKFKSKSRSILIATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITF 364
Query: 98 LPK 100
+ +
Sbjct: 365 VSQ 367
>gi|407368490|ref|ZP_11115022.1| ATP-dependent RNA helicase [Pseudomonas mandelii JR-1]
Length = 444
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 34/161 (21%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG---------------- 52
+ + K KP + L+R ++ +VFA + ++ +G G
Sbjct: 225 VVDKKRKPELFVHLMRKGKWKQVLVFAKTRNGVDALVEKLQGLGINADGIHGDKPQATRQ 284
Query: 53 ---------HMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
+Q+LV +D G+D+E + + YIHR G RAG +G
Sbjct: 285 RALDRFKASEVQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGASGQA 344
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L+ DE LL + + L +Q +HD P H +P +
Sbjct: 345 ISLVCADEVNLLSAIETLTRQTLPRQMEHDFEPEHRVPDTD 385
>gi|58264962|ref|XP_569637.1| ATP-dependent RNA helicase [Cryptococcus neoformans var. neoformans
JEC21]
gi|134109595|ref|XP_776912.1| hypothetical protein CNBC4030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259592|gb|EAL22265.1| hypothetical protein CNBC4030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57225869|gb|AAW42330.1| ATP-dependent RNA helicase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 701
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 20/109 (18%)
Query: 27 GGEKFIV---FASSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAY--------- 74
GG++ +V + A K L A G+G + ++VCSD + G+D+ ++
Sbjct: 566 GGKRLVVEQYSGETRAKDKKQLLAEFGEGKVNLIVCSDLIARGIDLPSVSHVVSYDIPLD 625
Query: 75 IKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123
I+ Y+HR G ARAG+ G +TL+ K E FK +LQ A H
Sbjct: 626 IRKYVHRVGRTARAGRQGTAWTLVEKQE--------ALHFKGMLQNAGH 666
>gi|449543170|gb|EMD34147.1| hypothetical protein CERSUDRAFT_125827 [Ceriporiopsis subvermispora
B]
Length = 699
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 23/133 (17%)
Query: 27 GGEKFIVFASSVANSPKT----LKAFRGKGHMQVLVCSDAMTSGMDVERAAYI------- 75
G + +V A S SP L+ F+ + + +LVCSD ++ G+D+ +++
Sbjct: 562 GSARIVVKAYSSDLSPSERKSILEQFKNQ-KIHILVCSDLISRGIDISHVSHVVSYDAPV 620
Query: 76 --KTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH-DSCPVHSIP 132
+ Y+HR G ARAG+ G +TL+ + E + FK +L++ADH D +
Sbjct: 621 DMRKYVHRVGRTARAGRFGSAWTLVEEQE--------ARYFKSMLKEADHLDKVKRLRVS 672
Query: 133 SSSIESLRPIYKS 145
LRP Y++
Sbjct: 673 EKETTPLRPAYEN 685
>gi|392564142|gb|EIW57320.1| DEAD-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 682
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 19/111 (17%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCF 95
L+ FR + + +L+CSD ++ G+D+ +++ + Y+HR G ARAG+ G +
Sbjct: 568 LEQFRNQ-EINILICSDLVSRGIDISHVSHVVSYDVPVDFRKYVHRVGRTARAGREGDAW 626
Query: 96 TLLPKDEDKLLYMFQVKRFKKLLQQADH-DSCPVHSIPSSSIESLRPIYKS 145
TL+ + E + FK +L++ADH + + S + SL+P Y++
Sbjct: 627 TLVEEQE--------ARYFKGMLKEADHLEKVKRLRVSDSDVASLKPAYET 669
>gi|443726900|gb|ELU13896.1| hypothetical protein CAPTEDRAFT_175937 [Capitella teleta]
Length = 453
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 34/128 (26%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
+K K +YL+ +L L G FIVF S+ AN+ + R G H Q
Sbjct: 250 AKFKDVYLVYILNELAGNSFIVFCSTCANTQRVALMLRNLGMTAIPLHGQMNQTKRLGAL 309
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G TL
Sbjct: 310 NKFKSKSRSILIATDVASRGLDIPHVNVVVNFDIPTHSKDYIHRVGRTARAGKSGKAITL 369
Query: 98 LPKDEDKL 105
+ + + +L
Sbjct: 370 VTQYDVEL 377
>gi|349701304|ref|ZP_08902933.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter
europaeus LMG 18494]
Length = 430
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 16/128 (12%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L AFR G QVLV +D G+DV+ ++ ++Y+HR G RAG+NG
Sbjct: 287 RALDAFR-SGAAQVLVATDIAARGIDVDTVTHVFNHDLPSLPESYVHRIGRTGRAGRNGF 345
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS---EYVES 150
TL ++ L + + + L QADH P HS + + P+ + V+
Sbjct: 346 AITLCDAEQRAWLRDVEREIGRPLTVQADH---PWHSEAARNSTMRPPVLGGGPVKQVKP 402
Query: 151 QANRKRKI 158
Q R+RK+
Sbjct: 403 QKKRERKV 410
>gi|91092858|ref|XP_969365.1| PREDICTED: similar to ATP-dependent RNA helicase DDX51 [Tribolium
castaneum]
gi|270003080|gb|EEZ99527.1| hypothetical protein TcasGA2_TC000109 [Tribolium castaneum]
Length = 601
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 66/149 (44%), Gaps = 45/149 (30%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANS-----------PKTLKA------FRG- 50
+C +KP+ L L+ K +VF SV ++ K LK +G
Sbjct: 401 VCSKDVKPLVLYAFLKRENLTKTLVFTHSVESAHRLKILLKSLFKKRLKIEEISSNLKGK 460
Query: 51 ----------KGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQN 91
KG + +L+C+D + G+D+ Y+KTYIHRAG ARAG++
Sbjct: 461 SRDEFISSFTKGEVDLLICTDFLARGIDLPGVNCVISYSAPKYLKTYIHRAGRTARAGES 520
Query: 92 GHCFTLLPKDEDKLLYMFQVKRFKKLLQQ 120
G TLL ++ QV FK LL++
Sbjct: 521 GLAVTLLHEE--------QVPAFKTLLKK 541
>gi|405123262|gb|AFR98027.1| ATP-dependent RNA helicase [Cryptococcus neoformans var. grubii
H99]
Length = 718
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 20/109 (18%)
Query: 27 GGEKFIVFASS---VANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAY--------- 74
GG++ ++ S A K L A G+G + ++VCSD + G+D+ ++
Sbjct: 583 GGKRLVIEQYSGEMRARDKKQLLAEFGEGKINLIVCSDLIARGIDLPSVSHVVSYDIPLD 642
Query: 75 IKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123
I+ Y+HR G ARAG+ G +TL+ K E FK +LQ A H
Sbjct: 643 IRKYVHRVGRTARAGRQGTAWTLVEKQE--------ALHFKGMLQNAGH 683
>gi|345863070|ref|ZP_08815283.1| ATP-dependent RNA helicase RhlE [endosymbiont of Tevnia jerichonana
(vent Tica)]
gi|345125953|gb|EGW55820.1| ATP-dependent RNA helicase RhlE [endosymbiont of Tevnia jerichonana
(vent Tica)]
Length = 456
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 39/171 (22%)
Query: 9 IC--ESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG-------------- 52
IC + K KP L L+R+ + +VF + + + + +GKG
Sbjct: 222 ICPVDKKQKPALLTQLIRDNRWRQVLVFTRTKQGADRLTRHLKGKGIEAEAIHGNKSQGA 281
Query: 53 -----------HMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNG 92
+++LV +D G+D+++ + + YIHR G RAG G
Sbjct: 282 RTKALADFKEGSVRILVATDIAARGLDIDQLPQVVNFDLPHVAEDYIHRIGRTGRAGARG 341
Query: 93 HCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSC-PVHSIPSSSIESLRPI 142
+L+ DE K L + + K+LL + D PVH +P+S ++ LRPI
Sbjct: 342 QAISLVSADEFKQLSDIE-RLIKQLLTRKLIDGFEPVHDLPASHLD-LRPI 390
>gi|350416892|ref|XP_003491155.1| PREDICTED: probable ATP-dependent RNA helicase Dbp73D-like [Bombus
impatiens]
Length = 615
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 66/133 (49%), Gaps = 25/133 (18%)
Query: 19 LIPLLRNLGGEKFIVF----ASSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDV----- 69
L LL++L +K IV A V+ + + G++Q+LVCSDA+ G+D+
Sbjct: 453 LTILLQSLLSKKNIVVGELSAQLVSKEREDILTKFTSGNIQILVCSDALARGVDIPNVQL 512
Query: 70 ----ERAAYIKTYIHRAGPRARAGQNGHCFTLL-PKDEDKLLYMFQVKRFKKLLQQADHD 124
+ +I YIHRAG RAG++G ++L PK QVK FK +L A H
Sbjct: 513 VISYDLPKHINGYIHRAGRTGRAGKSGTAISILTPK---------QVKIFKHMLNNA-HK 562
Query: 125 SCP-VHSIPSSSI 136
P V I S+I
Sbjct: 563 VIPHVEKIELSAI 575
>gi|261414880|ref|YP_003248563.1| DEAD/DEAH box helicase [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261371336|gb|ACX74081.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 463
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 13/105 (12%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANS--PKTLKAFRGKGHMQVLVCSDAMTSGM 67
C K YL +L G E + VA S KTL AFR K +++L+C+D G+
Sbjct: 276 CNYKRDVSYLEQVLSGYGFE-VGALSGDVAQSLREKTLNAFRDK-KLKILICTDVAARGI 333
Query: 68 DVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDED 103
DV+ ++ + Y+HR+G ARAG++G C +L+ E+
Sbjct: 334 DVDHVTHVIVYDHPADHEVYVHRSGRTARAGRSGLCISLITPVEE 378
>gi|209544711|ref|YP_002276940.1| DEAD/DEAH box helicase [Gluconacetobacter diazotrophicus PAl 5]
gi|209532388|gb|ACI52325.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 427
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 18/129 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L AFR G QVLV +D G+DV+ ++ ++Y+HR G RAG+NG
Sbjct: 287 RALDAFR-SGTAQVLVATDIAARGIDVDTVTHVFNHDLPSLPESYVHRIGRTGRAGRNGF 345
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIY----KSEYVE 149
TL ++ L + + + L+ Q DH P HS ++ ++RP ++ V+
Sbjct: 346 AITLCDAEQRAWLRDVEREIGRALIVQDDH---PWHS-EAARNSTMRPPVLGGAPAKEVK 401
Query: 150 SQANRKRKI 158
Q R+RK+
Sbjct: 402 PQKKRERKV 410
>gi|385789846|ref|YP_005820969.1| putative ATP-dependent RNA helicase DeaD [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|302326490|gb|ADL25691.1| putative ATP-dependent RNA helicase DeaD [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 483
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 13/105 (12%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANS--PKTLKAFRGKGHMQVLVCSDAMTSGM 67
C K YL +L G E + VA S KTL AFR K +++L+C+D G+
Sbjct: 296 CNYKRDVSYLEQVLSGYGFE-VGALSGDVAQSLREKTLNAFRDK-KLKILICTDVAARGI 353
Query: 68 DVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDED 103
DV+ ++ + Y+HR+G ARAG++G C +L+ E+
Sbjct: 354 DVDHVTHVIVYDHPADHEVYVHRSGRTARAGRSGLCISLITPVEE 398
>gi|150025027|ref|YP_001295853.1| DEAD/DEAH box helicase [Flavobacterium psychrophilum JIP02/86]
gi|149771568|emb|CAL43039.1| Probable ATP-dependent RNA helicase, DEAD/DEAH box family
[Flavobacterium psychrophilum JIP02/86]
Length = 444
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 15/85 (17%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ + FR GH+ +LV +D G+DV+ +Y+ +TY+HR+G ARAG NG
Sbjct: 284 RIMDQFRA-GHINILVATDLAARGIDVKEISYVVNYHLPDVHETYVHRSGRTARAGANGF 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLL 118
T+L ++E + ++ F+K L
Sbjct: 343 SLTILQQEE-----IAEIADFEKAL 362
>gi|299750023|ref|XP_001836493.2| ATP-dependent RNA helicase [Coprinopsis cinerea okayama7#130]
gi|298408706|gb|EAU85306.2| ATP-dependent RNA helicase [Coprinopsis cinerea okayama7#130]
Length = 692
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 24/129 (18%)
Query: 32 IVFASSVANSPKT-----LKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKT 77
IV + ++SP + L+ F+ + + +L+CSD ++ G+D+ + I+
Sbjct: 562 IVARAYSSDSPPSERKSILEDFKAQ-KIHILICSDLISRGIDISHVNHVVSYDAPVDIRK 620
Query: 78 YIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH-DSCPVHSIPSSSI 136
Y+HR G ARAG+ G +TL+ + E FKK++++ADH DS + ++
Sbjct: 621 YVHRVGRTARAGREGDAWTLVEEQE--------AHYFKKMMKEADHLDSVKRLRVAETAT 672
Query: 137 ESLRPIYKS 145
L P Y++
Sbjct: 673 APLEPFYEA 681
>gi|349699188|ref|ZP_08900817.1| DNA/RNA helicase [Gluconacetobacter europaeus LMG 18494]
Length = 524
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 10/76 (13%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
TL+AF+ G +++LVCSD G+D+ +++ + Y+HR G RAG+ GH
Sbjct: 330 TLEAFK-SGELKILVCSDIAARGIDIGGLSHVFNFDVPFHAEDYVHRIGRTGRAGRTGHA 388
Query: 95 FTLLPKDEDKLLYMFQ 110
+TL DE+ L+ +
Sbjct: 389 YTLATPDEEALVQAIE 404
>gi|449281559|gb|EMC88606.1| ATP-dependent RNA helicase DDX51, partial [Columba livia]
Length = 489
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 22/117 (18%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAGQNGH 93
+T+K F +G +Q+L+ +DA G+D++ Y I+TYIHR G ARAG+ G
Sbjct: 377 RTMKEFE-QGKIQLLISTDATARGIDIKGVNYVINYDAPQFIRTYIHRVGRTARAGEVGV 435
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVES 150
F+L+ + Q +RF ++L+ A H + + SL+P+ + EY E+
Sbjct: 436 AFSLVLR--------IQERRFLRMLKDAGIRDVKKHPVKGN---SLKPLVQ-EYEEA 480
>gi|195495021|ref|XP_002095090.1| GE22191 [Drosophila yakuba]
gi|194181191|gb|EDW94802.1| GE22191 [Drosophila yakuba]
Length = 681
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 68/158 (43%), Gaps = 49/158 (31%)
Query: 5 LSPQIC--ESKLKPIYLIPLLRNLGGEKFIVFASSVANSPK------------------- 43
L+ Q C E +LKP+ + L+ ++F+ F +S + +
Sbjct: 419 LTEQYCVTELRLKPLTVYALVEKYQWKRFLCFTNSSDQASRLTFVLSLLFQNGTKVAELS 478
Query: 44 ----------TLKAFRGKGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGP 84
TL+ F G + LVCSDA+ G+DV E +I TYIHR G
Sbjct: 479 GNLSAKIRKTTLRNFSA-GKINGLVCSDALARGIDVADVDVVLSYEIPRHITTYIHRVGR 537
Query: 85 RARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQAD 122
ARAG+ G TLL D+D L FKK+L AD
Sbjct: 538 TARAGRKGTAVTLL-TDKDMTL-------FKKILSDAD 567
>gi|401883807|gb|EJT47994.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
2479]
Length = 743
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 20/108 (18%)
Query: 26 LGGEKFIVFASSVANSP---KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYIKTY---- 78
+GG+K V + + P KT+ + G + VLVCSD ++ G+D+ A++ +Y
Sbjct: 609 IGGKKLSVASFTRDMKPSERKTMLSDFAAGKLDVLVCSDLISRGIDLPSVAHVVSYDVPL 668
Query: 79 -----IHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQA 121
+HRAG ARAG++G +T++ K E K FK +L A
Sbjct: 669 DMTKYVHRAGRTARAGRDGTVWTMVEKQE--------AKHFKDMLAAA 708
>gi|393245833|gb|EJD53343.1| DEAD-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 522
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 18/120 (15%)
Query: 35 ASSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPR 85
AS +++P++L G + VLVCSD ++ G+DV A + + Y+HR G
Sbjct: 398 ASYSSDAPRSLLERFRTGAVDVLVCSDLVSRGLDVPSVAAVLNYDAPVDARKYVHRVGRT 457
Query: 86 ARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH-DSCPVHSIPSSSIESLRPIYK 144
ARAG+ G +T++ E + FK+LL A D + +E LRP Y+
Sbjct: 458 ARAGRRGDAWTMVEGQE--------ARHFKELLAAAGRTDRVKKVRVAEKVLEPLRPAYE 509
>gi|148258225|ref|YP_001242810.1| ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1]
gi|146410398|gb|ABQ38904.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. BTAi1]
Length = 469
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 11/120 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL AFR G ++ LV +D G+DV+ +++ +TY+HR G ARAG +G
Sbjct: 286 RTLAAFR-TGEIRTLVATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIGRTARAGADGV 344
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQAN 153
+L+ D+L Y+ ++R K + P H + + + RP + ++AN
Sbjct: 345 AISLV-AGADELSYLRDIERLTKTTLPREDRRTPGHRDAAPAGQPQRPGGRPGMQNARAN 403
>gi|162149460|ref|YP_001603921.1| ATP-dependent RNA helicase [Gluconacetobacter diazotrophicus PAl 5]
gi|161788037|emb|CAP57641.1| putative ATP-dependent RNA helicase [Gluconacetobacter
diazotrophicus PAl 5]
Length = 429
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 16/128 (12%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L AFR G QVLV +D G+DV+ ++ ++Y+HR G RAG+NG
Sbjct: 289 RALDAFRA-GTAQVLVATDIAARGIDVDTVTHVFNHDLPSLPESYVHRIGRTGRAGRNGF 347
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS---EYVES 150
TL ++ L + + + L+ Q DH P HS + + P+ + V+
Sbjct: 348 AITLCDAEQRAWLRDVEREIGRALIVQDDH---PWHSEAARNSTMRPPVLGGAPPKEVKP 404
Query: 151 QANRKRKI 158
Q R+RK+
Sbjct: 405 QKKRERKV 412
>gi|307721464|ref|YP_003892604.1| DEAD/DEAH box helicase [Sulfurimonas autotrophica DSM 16294]
gi|306979557|gb|ADN09592.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica
DSM 16294]
Length = 423
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 24/112 (21%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
AN KTL F+ +G ++VLV +D + G+D+E Y+ + Y+HR G RAG
Sbjct: 277 ANRLKTLNQFK-EGKIRVLVATDIASRGLDIEELPYVINYELPSIPEDYVHRVGRTGRAG 335
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRP 141
+ G +L+ + + +K +KL+ Q IP ++E P
Sbjct: 336 REGEAISLI-----DIYEKYDIKDIEKLIGQ---------KIPQETVEGFEP 373
>gi|325188363|emb|CCA22900.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 496
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 77/175 (44%), Gaps = 49/175 (28%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPK-------------------------- 43
C+S KP+ LI LL + ++F SSV + +
Sbjct: 300 CDSDSKPLRLIQLLLTFKDQMTLIFTSSVNATHRLTRLLQLVFKEHSDDDVGVQEYSSSL 359
Query: 44 ------TLKAFRGKGHMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARA 88
TL A KG ++LVCSDAM GMD++ ++IKTYIHRAG ARA
Sbjct: 360 TLQQRRTLVAKCKKGLYRILVCSDAMARGMDLDDVVNVINYDVPSFIKTYIHRAGRAARA 419
Query: 89 GQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIY 143
G+ G C TL+ + Q K +++LQ+A +P I+ L P+Y
Sbjct: 420 GRFGRCVTLVKRG--------QTKGLQRMLQKAKKKKLLAFPLPPEEIQQLVPVY 466
>gi|410639150|ref|ZP_11349703.1| ATP-dependent RNA helicase DeaD [Glaciecola lipolytica E3]
gi|410141678|dbj|GAC16908.1| ATP-dependent RNA helicase DeaD [Glaciecola lipolytica E3]
Length = 575
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 25/141 (17%)
Query: 51 KGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKD 101
+G + +LV +D + G+DVER +++ ++Y+HR G RAG+ G +
Sbjct: 294 QGKIDILVATDVVARGLDVERVSHVINYDVPYDTESYVHRIGRTGRAGRQGDAILFISHR 353
Query: 102 EDKLLYMFQVKRFKKLLQQ--------------ADHDSCPVHSIPSSSIESLRPIYKSEY 147
E ++L+ + K K+ ++Q + + + +I SIESL PI +S
Sbjct: 354 EKRMLFSIE-KATKQNIEQMPIPSISEINQTRLSRFKTSVIEAIQDDSIESLIPIVESIQ 412
Query: 148 VESQANRKRKIGFKLSRMVKG 168
E++A KI L+++ +G
Sbjct: 413 KETEAA-PEKIMAALAKIAQG 432
>gi|427792293|gb|JAA61598.1| Putative atp-dependent rna helicase, partial [Rhipicephalus
pulchellus]
Length = 783
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 21/136 (15%)
Query: 22 LLRNLGGEKFIVFAS--SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERA------- 72
+L+ +G + F++ S+A+ + L+ F G + +LVCS+ + G+DV
Sbjct: 623 VLKEMGSIRAEEFSAKLSIADRARVLRKF-ASGKLDILVCSNVLARGLDVANVRHVICYD 681
Query: 73 --AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH-DSCPVH 129
+IKTY+HR G ARAG G T L Q++ FK++L A D P+
Sbjct: 682 PPKFIKTYVHRVGRTARAGVPGTAVT--------FLRQGQLQAFKEMLSSAGKTDIQPLD 733
Query: 130 SIPSSSIESLRPIYKS 145
+ +E+L+ Y+
Sbjct: 734 LSNTDELEALQSKYRD 749
>gi|313219322|emb|CBY16445.1| unnamed protein product [Oikopleura dioica]
Length = 557
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAG 89
A +TL+AFR G M+VLVC+D G+DV E + I +YIHR+G RAG
Sbjct: 318 ATREQTLQAFR-DGKMRVLVCTDVAARGLDVPEVDLVIQTEPPSDIDSYIHRSGRTGRAG 376
Query: 90 QNGHCFTLL-PKDEDKLLYMFQVKRFK 115
++G C L PK +L + V FK
Sbjct: 377 RSGVCICLYKPKQAYQLKQVENVAGFK 403
>gi|321253768|ref|XP_003192843.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276]
gi|317459312|gb|ADV21056.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276]
Length = 702
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 17/94 (18%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAG 89
A K L A G+G + ++VCSD + G+D+ ++ I+ Y+HR G ARAG
Sbjct: 582 ARDKKQLLAEFGEGKVNLIVCSDLIARGIDLPSVSHVVSYDIPLDIRKYVHRVGRTARAG 641
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123
+ G +TL+ K E FK +LQ A H
Sbjct: 642 RQGTAWTLVEKQE--------ALHFKGMLQNAGH 667
>gi|409122137|ref|ZP_11221532.1| DEAD/DEAH box helicase [Gillisia sp. CBA3202]
Length = 446
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 32/138 (23%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ +K FR +GH+ +LV +D G+DV+ +Y+ + Y+HR+G ARAG G+
Sbjct: 284 RIMKQFR-EGHINILVATDLAARGIDVKEISYVVNYHLPDVYEVYVHRSGRTARAGAKGY 342
Query: 94 CFTLLPKDEDKLLYMFQ------VKRFKKLLQQADHDSC------------PVHSIPSSS 135
T++ +E + FQ K + K Q+ D+ P H+I S+
Sbjct: 343 ALTVIQNEEIPDIAEFQDELGIVFKEYSKPNAQSVEDNNTLLWAKQIFKTKPNHNISSTL 402
Query: 136 IESLRPIY----KSEYVE 149
E ++ I+ K E +E
Sbjct: 403 KEGVKTIFHHLTKEELIE 420
>gi|323693539|ref|ZP_08107743.1| hypothetical protein HMPREF9475_02606 [Clostridium symbiosum
WAL-14673]
gi|323502394|gb|EGB18252.1| hypothetical protein HMPREF9475_02606 [Clostridium symbiosum
WAL-14673]
Length = 422
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 19/119 (15%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
KT+ AFR +G ++ L+ +D G+D+E ++ +TY+HR G R G+ G
Sbjct: 286 KTIDAFR-RGAIRYLIATDVAARGIDLENITHVINYDFPTGRETYVHRIGRTGRNGRTGK 344
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQA 152
+L+ ++ ++L M ++ S PV P SS E + +KS+ ++++A
Sbjct: 345 AVSLVTAEDRRMLQM---------TEEYTGRSLPVLVCPESSGEEEKNFWKSQRLKTEA 394
>gi|355629430|ref|ZP_09050398.1| hypothetical protein HMPREF1020_04477 [Clostridium sp. 7_3_54FAA]
gi|354819116|gb|EHF03568.1| hypothetical protein HMPREF1020_04477 [Clostridium sp. 7_3_54FAA]
Length = 484
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 19/119 (15%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
KT+ AFR +G ++ L+ +D G+D+E ++ +TY+HR G R G+ G
Sbjct: 286 KTIDAFR-RGAIRYLIATDVAARGIDLENITHVINYDFPTGRETYVHRIGRTGRNGRTGK 344
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQA 152
+L+ ++ ++L M ++ S PV P SS E + +KS+ ++++A
Sbjct: 345 AVSLVTAEDRRMLQM---------TEEYTGRSLPVLVCPESSGEEEKNFWKSQRLKTEA 394
>gi|157138136|ref|XP_001664143.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|108869558|gb|EAT33783.1| AAEL013950-PA [Aedes aegypti]
Length = 495
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 36/124 (29%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKT--------------------------L 45
+K K +YL+ +L L G F++F S+ N+ +T L
Sbjct: 280 AKYKDVYLVHILNELAGNSFMIFCSTCNNTVRTALMLRALGLAAVPLHGQMSQNKRLAAL 339
Query: 46 KAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFT 96
F+GK Q+L+ +D + G+D+ + K YIHR G ARAG+ G T
Sbjct: 340 NKFKGKNR-QILISTDVASRGLDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRAGKAVT 398
Query: 97 LLPK 100
+ +
Sbjct: 399 FVTQ 402
>gi|402487889|ref|ZP_10834704.1| DEAD/DEAH box helicase [Rhizobium sp. CCGE 510]
gi|401813057|gb|EJT05404.1| DEAD/DEAH box helicase [Rhizobium sp. CCGE 510]
Length = 505
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 18/110 (16%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
TL++FR G++Q+LV SD G+D+ +++ + Y+HR G RAG++G
Sbjct: 288 TLQSFR-DGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAS 346
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLL-QQADHDSCPVHSIPSS--SIESLRP 141
FTL+ K + K V +KL+ Q+ + S V S+P + S +S RP
Sbjct: 347 FTLVTKRDTKF-----VDAIEKLIGQKVEWLSGDVSSLPPAEESADSERP 391
>gi|323485086|ref|ZP_08090439.1| hypothetical protein HMPREF9474_02190 [Clostridium symbiosum
WAL-14163]
gi|323401642|gb|EGA93987.1| hypothetical protein HMPREF9474_02190 [Clostridium symbiosum
WAL-14163]
Length = 484
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 19/119 (15%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
KT+ AFR +G ++ L+ +D G+D+E ++ +TY+HR G R G+ G
Sbjct: 286 KTIDAFR-RGAIRYLIATDVAARGIDLENITHVINYDFPTGRETYVHRIGRTGRNGRTGK 344
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQA 152
+L+ ++ ++L M ++ S PV P SS E + +KS+ ++++A
Sbjct: 345 AVSLVTAEDRRMLQM---------TEEYTGRSLPVLVCPESSGEEEKNFWKSQRLKTEA 394
>gi|357627854|gb|EHJ77400.1| hypothetical protein KGM_01171 [Danaus plexippus]
Length = 473
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 37/183 (20%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPK--------------------------TLK 46
K K +YL+ +L L G FIVF S+ A + + L
Sbjct: 261 KFKDVYLVHILNELAGNSFIVFVSTCAGALRVALLLRALGVGAVPLHGQMSQQKRLAALN 320
Query: 47 AFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
F+ K VL+C+D + G+D+ + K YIHR G ARAG+ G T
Sbjct: 321 KFKSKAR-SVLICTDVASRGLDIPHVDVVVNLDIPLHSKDYIHRVGRTARAGRAGKAITF 379
Query: 98 LPKDEDKLLYMFQVKRFKKL-LQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQANRKR 156
+ + + +L + K+L L + D + V + + L I E + + +R +
Sbjct: 380 VSQYDVELYQRIEQLIGKQLPLYKTDENEVMVLQERVAEAQRLTKIEMKELEDKKGSRGK 439
Query: 157 KIG 159
K G
Sbjct: 440 KRG 442
>gi|332304872|ref|YP_004432723.1| DEAD/DEAH box helicase domain protein [Glaciecola sp. 4H-3-7+YE-5]
gi|410642867|ref|ZP_11353376.1| ATP-dependent RNA helicase DeaD [Glaciecola chathamensis S18K6]
gi|410646139|ref|ZP_11356593.1| ATP-dependent RNA helicase DeaD [Glaciecola agarilytica NO2]
gi|332172201|gb|AEE21455.1| DEAD/DEAH box helicase domain protein [Glaciecola sp. 4H-3-7+YE-5]
gi|410134478|dbj|GAC04992.1| ATP-dependent RNA helicase DeaD [Glaciecola agarilytica NO2]
gi|410137750|dbj|GAC11563.1| ATP-dependent RNA helicase DeaD [Glaciecola chathamensis S18K6]
Length = 576
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 30/129 (23%)
Query: 51 KGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKD 101
+G + +LV +D + G+DVER +++ ++Y+HR G RAG+ G +
Sbjct: 294 RGKIDILVATDVVARGLDVERVSHVINYDVPYDTESYVHRIGRTGRAGRQGDAILFISHR 353
Query: 102 EDKLLYMFQVKRFKKLLQQADHDSCP-----------------VHSIPSSSIESLRPIYK 144
E ++L F ++R + Q D P + +I SSIE+L PI +
Sbjct: 354 EKRML--FSIERATR--QSIDPMPIPSISQLNETRLSRFKSSVIEAISDSSIETLIPIVE 409
Query: 145 SEYVESQAN 153
S E++A+
Sbjct: 410 SIQAETEAS 418
>gi|378953000|ref|YP_005210488.1| ATP-dependent RNA helicase [Pseudomonas fluorescens F113]
gi|359763014|gb|AEV65093.1| ATP-dependent RNA helicase [Pseudomonas fluorescens F113]
Length = 445
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +Q+LV +D G+D+E + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKAS-EVQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE LL ++ + L +Q + D P H +P +
Sbjct: 340 STGEAISLVCADEVNLLSAIEMLTRQTLTRQMEQDFEPEHRVPDTD 385
>gi|346472553|gb|AEO36121.1| hypothetical protein [Amblyomma maculatum]
Length = 473
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
+K K +YL+ LL L G F+VF S+ +N+ +T R G H Q
Sbjct: 255 AKFKDVYLVHLLNELAGNSFMVFCSTCSNTQRTALLLRNLGFTAIPLHGQMGQAKRLGSL 314
Query: 56 ---------VLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 315 TKFKSKNRSILIATDVASRGLDIPHVDCVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 374
Query: 98 LPK 100
+ +
Sbjct: 375 VTQ 377
>gi|194750630|ref|XP_001957633.1| GF10505 [Drosophila ananassae]
gi|190624915|gb|EDV40439.1| GF10505 [Drosophila ananassae]
Length = 683
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 66/155 (42%), Gaps = 50/155 (32%)
Query: 5 LSPQIC--ESKLKPIYLIPLLRNLGGEKFIVFASSVANSPK------------------- 43
L+ QIC E +LKP+ L L+ ++F+ F +S + +
Sbjct: 417 LTEQICITEMRLKPLTLYALVEKYKWKRFLCFTNSTDQASRLAFVMATLFENSETKVAEL 476
Query: 44 -----------TLKAFRGKGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAG 83
LK+F G + L+CSDA+ G+DV E +IKT+IHR G
Sbjct: 477 SGNLSALVRKQNLKSF-ANGKINGLICSDALARGIDVADIDVVLSYEAPRHIKTHIHRVG 535
Query: 84 PRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLL 118
ARAG+ G TLL + + FKK+L
Sbjct: 536 RTARAGRKGTAVTLLTEQDQ--------AAFKKML 562
>gi|254457027|ref|ZP_05070455.1| dead/deah box helicase [Sulfurimonas gotlandica GD1]
gi|373868196|ref|ZP_09604594.1| DEAD/DEAH box helicase [Sulfurimonas gotlandica GD1]
gi|207085819|gb|EDZ63103.1| dead/deah box helicase [Sulfurimonas gotlandica GD1]
gi|372470297|gb|EHP30501.1| DEAD/DEAH box helicase [Sulfurimonas gotlandica GD1]
Length = 431
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 24/112 (21%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
AN KTL F+ +G ++VLV +D + G+D+E Y+ + Y+HR G RAG
Sbjct: 279 ANRQKTLTQFK-EGQIRVLVATDIASRGLDIEELPYVINYELPSIPEDYVHRVGRTGRAG 337
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRP 141
++G +LL + + +K ++L+ Q IP +E P
Sbjct: 338 RDGQAISLL-----DVYDKYNIKDVERLIGQ---------KIPQEVVEGFEP 375
>gi|427789491|gb|JAA60197.1| Putative atp-dependent rna helicase ddx47 [Rhipicephalus
pulchellus]
Length = 465
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
+K K +YL+ LL L G F+VF S+ +N+ +T R G H Q
Sbjct: 248 AKFKDVYLVHLLNELAGNSFMVFCSTCSNTQRTALLLRNLGFTAIPLHGQMGQAKRLGAL 307
Query: 56 ---------VLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 308 TKFKSKNRSILIATDVASRGLDIPHVDCVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 367
Query: 98 LPK 100
+ +
Sbjct: 368 VTQ 370
>gi|442762935|gb|JAA73626.1| Putative atp-dependent rna helicase, partial [Ixodes ricinus]
Length = 429
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
+K K +YL+ LL L G F+VF S+ +N+ +T R G H Q
Sbjct: 248 AKFKDVYLVHLLNELAGNSFMVFCSTCSNTQRTALLLRNLGFTAIPLHGQMGQAKRLGAL 307
Query: 56 ---------VLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 308 NKFKSKNRSILIATDVASRGLDIPHVDCVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 367
Query: 98 LPK 100
+ +
Sbjct: 368 VTQ 370
>gi|170046412|ref|XP_001850760.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
gi|167869183|gb|EDS32566.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
Length = 438
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 36/124 (29%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKT--------------------------L 45
+K K +YL+ +L L G F++F S+ N+ +T L
Sbjct: 219 AKFKDVYLVHILNELAGNSFMIFCSTCNNTVRTALMLRALGLAAVPLHGQMSQNKRLASL 278
Query: 46 KAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFT 96
F+GK Q+L+ +D + G+D+ + K YIHR G ARAG+ G T
Sbjct: 279 NKFKGKDR-QILISTDVASRGLDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRAGKAVT 337
Query: 97 LLPK 100
+ +
Sbjct: 338 FVTQ 341
>gi|398858265|ref|ZP_10613957.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM79]
gi|398239577|gb|EJN25284.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM79]
Length = 444
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 62/160 (38%), Gaps = 34/160 (21%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG----------------- 52
+ K KP I L+R ++ +VFA + ++ +G G
Sbjct: 226 VDKKRKPELFIHLMRKGKWKQVLVFAKTRNGVDALVEKLQGLGINADGIHGDKPQATRQR 285
Query: 53 --------HMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCF 95
+Q+LV +D G+D+E + + YIHR G RAG G
Sbjct: 286 ALDRFKASEVQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGATGQAI 345
Query: 96 TLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L+ DE LL + + L +Q + D P H +P +
Sbjct: 346 SLVCADEVNLLSAIETLTRQTLTRQMEQDFEPEHRVPDTD 385
>gi|423699455|ref|ZP_17673945.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens
Q8r1-96]
gi|387996933|gb|EIK58263.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens
Q8r1-96]
Length = 445
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +Q+LV +D G+D+E + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKAS-EVQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE LL ++ + L +Q + D P H +P +
Sbjct: 340 STGEAISLVCADEVNLLSAIEMLTRQTLTRQMEQDFEPEHRVPDTD 385
>gi|330811885|ref|YP_004356347.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327379993|gb|AEA71343.1| Putative ATP-dependent RNA helicase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 445
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +Q+LV +D G+D+E + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKAS-EVQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE LL ++ + L +Q + D P H +P +
Sbjct: 340 STGEAISLVCADEVNLLSAIEMLTRQTLTRQMEQDFEPEHRVPDTD 385
>gi|237801475|ref|ZP_04589936.1| ATP-dependent RNA helicase rhlE, partial [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331024334|gb|EGI04391.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 249
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +++LV +D G+D++ + + YIHR G RAG
Sbjct: 88 ATRQRALDRFKSN-EVKILVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAG 146
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
Q G +L+ DE +LL +V + L ++ + D P H +PS+
Sbjct: 147 QTGEAISLVCADEVELLSAIEVLTRQTLERREEQDFEPEHRVPSTD 192
>gi|237803841|ref|ZP_04591426.1| ATP-dependent RNA helicase rhlE, partial [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|237805438|ref|ZP_04592142.1| ATP-dependent RNA helicase rhlE, partial [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331025821|gb|EGI05877.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331026545|gb|EGI06600.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 165
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +++LV +D G+D++ + + YIHR G RAG
Sbjct: 4 ATRQRALDRFKSN-EVKILVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAG 62
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
Q G +L+ DE +LL +V + L ++ + D P H +PS+
Sbjct: 63 QTGEAISLVCADEVELLSAIEVLTRQTLERREEQDFEPEHRVPSTD 108
>gi|398905221|ref|ZP_10652677.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM50]
gi|398174731|gb|EJM62517.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM50]
Length = 444
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +Q+LV +D G+D+E + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKAS-EVQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE LL + + L +Q + D P H +P +
Sbjct: 340 ATGQAISLVCADEVNLLSAIETLTRQTLTRQMEQDFEPEHRVPDTD 385
>gi|209549507|ref|YP_002281424.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|424913801|ref|ZP_18337165.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|209535263|gb|ACI55198.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|392849977|gb|EJB02498.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 505
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 18/110 (16%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
TL++FR G++Q+LV SD G+D+ +++ + Y+HR G RAG++G
Sbjct: 288 TLQSFR-DGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAS 346
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLL-QQADHDSCPVHSIPSS--SIESLRP 141
FTL+ K + K V +KL+ ++ + S V+S+P + S +S RP
Sbjct: 347 FTLVTKRDSKF-----VDAIEKLIGEKVEWLSGDVNSLPPAEESADSERP 391
>gi|398837943|ref|ZP_10595227.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM102]
gi|398117501|gb|EJM07252.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM102]
Length = 444
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +Q+LV +D G+D+E + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKAS-EVQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE LL + + L +Q + D P H +P +
Sbjct: 340 ATGQAISLVCADEVNLLSAIETLTRQTLTRQMEQDFEPEHRVPDTD 385
>gi|119477017|ref|ZP_01617298.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
HTCC2143]
gi|119449824|gb|EAW31061.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
HTCC2143]
Length = 431
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 12/105 (11%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+G G +QVLV +D G+D+E+ ++ + Y+HR G RAG G
Sbjct: 284 KALADFKG-GKVQVLVATDIAARGLDIEQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGE 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSC-PVHSIPSSSIE 137
+L+ DE K L + + +LLQ+ D PV+ +P S +
Sbjct: 343 AVSLVSADEFKQLSDIE-RLIGELLQRQSVDGFKPVNELPESRLN 386
>gi|424895190|ref|ZP_18318764.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393179417|gb|EJC79456.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 505
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 18/110 (16%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
TL++FR G++Q+LV SD G+D+ +++ + Y+HR G RAG++G
Sbjct: 288 TLQSFR-DGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAS 346
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLL-QQADHDSCPVHSIP--SSSIESLRP 141
FTL+ K + K V +KL+ ++ + S V+S+P S +S RP
Sbjct: 347 FTLVTKRDSKF-----VDAIEKLIGEKVEWLSGDVNSLPPAEESADSERP 391
>gi|296536687|ref|ZP_06898752.1| ATP-dependent RNA helicase RhlE, partial [Roseomonas cervicalis
ATCC 49957]
gi|296262986|gb|EFH09546.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
Length = 560
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 24/121 (19%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
TL+ F+ G +Q+LVCSD G+D+ +++ + Y+HR G RAG+ GH
Sbjct: 388 TLEKFKA-GELQLLVCSDVAARGIDIGGLSHVYNFDVPFRDEDYVHRIGRTGRAGREGHA 446
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQANR 154
+T+ D+ KL+ + K IP IE L P+ E E+ +
Sbjct: 447 YTIATADDVKLVAAIEALTGK--------------PIPRIEIEGLEPVTPEELAEAASAP 492
Query: 155 K 155
K
Sbjct: 493 K 493
>gi|195475963|ref|XP_002090252.1| GE12898 [Drosophila yakuba]
gi|194176353|gb|EDW89964.1| GE12898 [Drosophila yakuba]
Length = 522
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K +YL+ +L +L G F++F S+ N+ KT R G H Q
Sbjct: 292 KYKDVYLVHILNDLAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALN 351
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+L+ +D + G+D+ + K YIHR G ARAG++G TL+
Sbjct: 352 KFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLV 411
Query: 99 PK 100
+
Sbjct: 412 TQ 413
>gi|195580593|ref|XP_002080120.1| GD24302 [Drosophila simulans]
gi|194192129|gb|EDX05705.1| GD24302 [Drosophila simulans]
Length = 519
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K +YL+ +L L G F++F S+ N+ KT R G H Q
Sbjct: 289 KYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALN 348
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+L+ +D + G+D+ + K YIHR G ARAG++G TL+
Sbjct: 349 KFKTKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLV 408
Query: 99 PK 100
+
Sbjct: 409 SQ 410
>gi|326929902|ref|XP_003211092.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Meleagris
gallopavo]
Length = 582
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 20/114 (17%)
Query: 19 LIPLLRNLGGEKFIVFASSVANSPK--TLKAFRGKGHMQVLVCSDAMTSGMDV------- 69
L L++ GG F+S + + + TLK F +G +Q+L+ +DA G+D+
Sbjct: 436 LFLLVQAFGGITVAEFSSRLPPNERKRTLKEFE-QGKIQLLISTDATARGIDIKGVNCVI 494
Query: 70 --ERAAYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQA 121
+ +I+TYIHR G ARAG+ G F+++ + Q +RF ++L+ A
Sbjct: 495 NYDTPQFIRTYIHRVGRTARAGKAGLAFSMVLR--------IQERRFLRMLKDA 540
>gi|195352029|ref|XP_002042518.1| GM23393 [Drosophila sechellia]
gi|194124387|gb|EDW46430.1| GM23393 [Drosophila sechellia]
Length = 519
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K +YL+ +L L G F++F S+ N+ KT R G H Q
Sbjct: 289 KYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALN 348
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+L+ +D + G+D+ + K YIHR G ARAG++G TL+
Sbjct: 349 KFKTKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLV 408
Query: 99 PK 100
+
Sbjct: 409 SQ 410
>gi|407792739|ref|ZP_11139775.1| ATP-dependent RNA helicase, partial [Idiomarina xiamenensis 10-D-4]
gi|407216997|gb|EKE86833.1| ATP-dependent RNA helicase, partial [Idiomarina xiamenensis 10-D-4]
Length = 393
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 62/145 (42%), Gaps = 39/145 (26%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLK----------AFRGK-------- 51
E KP L+ +LR L + IVF+ + + + +K A G
Sbjct: 225 AEKSQKPRMLMQILRELNLPQVIVFSRTKHGANRLVKQLHSDGFLAAAIHGNKSQGARTK 284
Query: 52 -------GHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCF 95
G +QVLV +D G+D+E+ Y+ + Y+HR G RAGQ GH
Sbjct: 285 ALADFKSGQVQVLVATDIAARGLDIEKLPYVINYDLPQVAEDYVHRIGRTGRAGQTGHAI 344
Query: 96 TLLPKDEDKLLYMFQVKRFKKLLQQ 120
+L+ +E K L K +KL+ Q
Sbjct: 345 SLVMDEEFKTL-----KAIEKLIGQ 364
>gi|109896747|ref|YP_660002.1| DEAD/DEAH box helicase [Pseudoalteromonas atlantica T6c]
gi|109699028|gb|ABG38948.1| ATP-dependent RNA helicase CsdA [Pseudoalteromonas atlantica T6c]
Length = 579
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 30/128 (23%)
Query: 51 KGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKD 101
+G + +LV +D + G+DVER +++ ++Y+HR G RAG+ G +
Sbjct: 294 RGKIDILVATDVVARGLDVERVSHVINYDVPYDTESYVHRIGRTGRAGRQGDAILFISHR 353
Query: 102 EDKLLYMFQVKRFKKLLQQADHDSCP-----------------VHSIPSSSIESLRPIYK 144
E ++L F ++R + Q D P + +I SSIE+L PI +
Sbjct: 354 EKRML--FSIERATR--QSIDPMPIPSISQLNETRLSRFKSSVIEAIGDSSIETLIPIVE 409
Query: 145 SEYVESQA 152
S E++A
Sbjct: 410 SIQAETEA 417
>gi|242019954|ref|XP_002430423.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212515553|gb|EEB17685.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 518
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 28/152 (18%)
Query: 22 LLRNLGGEKFIV--FASSVANSPKT--LKAFRGKGHMQVLVCSDAMTSGMDVERAAYI-- 75
+L+ L +K+ V ++++ S + L+ F G + +L+ SDA+ G+D+ Y+
Sbjct: 347 ILKKLCKKKYTVQQLSANIVQSKRNRILQNFE-NGKVDILISSDALARGIDIPNVKYVVS 405
Query: 76 -------KTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPV 128
KTY+HR G RAG+ GH L E V F K++ A +S V
Sbjct: 406 YDCPKFVKTYVHRIGRTGRAGKEGHSLAFLTSKE--------VTSFNKMVSAAGKNSVDV 457
Query: 129 HSIPSSSIESLRPIYKS------EYVESQANR 154
+ +E YK Y+E Q ++
Sbjct: 458 FNFEVEELEQYEVTYKKALLLLGNYLEKQKSK 489
>gi|358063500|ref|ZP_09150111.1| hypothetical protein HMPREF9473_02173 [Clostridium hathewayi
WAL-18680]
gi|356698293|gb|EHI59842.1| hypothetical protein HMPREF9473_02173 [Clostridium hathewayi
WAL-18680]
Length = 484
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 19/113 (16%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
KT+ AFR +G + L+ +D G+D E +++ +TY+HR G R G+ G
Sbjct: 286 KTVDAFR-RGAFRYLIATDVAARGVDFENISHVVNYDFPTGRETYVHRIGRTGRNGKEGR 344
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSE 146
+L+ +++ ++L M + ++L PV P++S E ++ +KS+
Sbjct: 345 AISLVCEEDRRMLQMVETYMDREL---------PVTECPAASPEEVKAFWKSQ 388
>gi|194759163|ref|XP_001961819.1| GF14739 [Drosophila ananassae]
gi|190615516|gb|EDV31040.1| GF14739 [Drosophila ananassae]
Length = 525
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K +YL+ +L L G F++F S+ N+ KT R G H Q
Sbjct: 295 KYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALN 354
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+L+ +D + G+D+ + K YIHR G ARAG++G TL+
Sbjct: 355 KFKAKDRSILISTDVASRGLDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRSGKAITLV 414
Query: 99 PK 100
+
Sbjct: 415 SQ 416
>gi|291001239|ref|XP_002683186.1| predicted protein [Naegleria gruberi]
gi|284096815|gb|EFC50442.1| predicted protein [Naegleria gruberi]
Length = 610
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Query: 41 SPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI--------KTYIHRAGPRARAGQNG 92
S L FR KGH VL+C+D + G D+E I KTYIHR G ARA + G
Sbjct: 491 STTILNNFR-KGHFNVLICTDVIGRGFDIEVDFVINYDAPLTLKTYIHRIGRTARAEKEG 549
Query: 93 HCFTLL 98
FT L
Sbjct: 550 TSFTFL 555
>gi|353239546|emb|CCA71453.1| related to DBP6-ATP-dependent RNA helicase [Piriformospora indica DSM
11827]
Length = 1596
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 61/113 (53%), Gaps = 22/113 (19%)
Query: 24 RNLGGEKFIV--FASSVANSPK--TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---- 75
R +G +K I F+S +A S + L+ F+ K + +L+CSD ++ G+D+ +++
Sbjct: 1455 REVGSKKIIAEAFSSDLAPSQRKTVLEKFKAK-QIDMLICSDLVSRGIDIPHVSHVVNYD 1513
Query: 76 -----KTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123
+ YIHR G ARAG+ G ++L+ + E + FK ++++A H
Sbjct: 1514 IPVDVRKYIHRVGRTARAGREGDAWSLVEEQE--------MHHFKLMMKEAHH 1558
>gi|242084812|ref|XP_002442831.1| hypothetical protein SORBIDRAFT_08g003560 [Sorghum bicolor]
gi|241943524|gb|EES16669.1| hypothetical protein SORBIDRAFT_08g003560 [Sorghum bicolor]
Length = 531
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 11/131 (8%)
Query: 19 LIPLLRNLGGEK-FIVFASSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI-- 75
L +LRNLG E FI S L F+ KG ++ C+D + G+D++ +
Sbjct: 358 LALMLRNLGFEAIFINGKMSQDKRLGALNRFKSKG-CNIITCTDVASRGLDIQGVDVVIN 416
Query: 76 ------KTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVH 129
K+Y+HR G ARAGQ+G+ +L+ + E L + + K K + +++ D C +
Sbjct: 417 YDIPSLKSYVHRVGRTARAGQSGYALSLVNQYE-VLRFKYIEKLLGKEISKSEVDECELK 475
Query: 130 SIPSSSIESLR 140
+ +S R
Sbjct: 476 ILKECVCDSKR 486
>gi|161611979|gb|AAI55869.1| LOC100135117 protein [Xenopus (Silurana) tropicalis]
Length = 644
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 26 LGGEKFIVFAS--SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDV---------ERAAY 74
GG F+S S KTLK F +G +Q+L+ +DA G+D+ + +
Sbjct: 505 FGGISVAEFSSRLSPGERKKTLKEFE-QGKVQLLISTDATARGIDIKGVKCVINYDAPQF 563
Query: 75 IKTYIHRAGPRARAGQNGHCFTLLPK 100
I+TY+HR G ARAG+ G FT+L K
Sbjct: 564 IRTYVHRVGRTARAGKAGLAFTMLLK 589
>gi|21464402|gb|AAM52004.1| RE27528p [Drosophila melanogaster]
Length = 507
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K +YL+ +L L G F++F S+ N+ KT R G H Q
Sbjct: 285 KYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALN 344
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+L+ +D + G+D+ + K YIHR G ARAG++G TL+
Sbjct: 345 KFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLV 404
Query: 99 PK 100
+
Sbjct: 405 SQ 406
>gi|403331283|gb|EJY64580.1| DEAD/DEAH box helicase family protein [Oxytricha trifallax]
Length = 1264
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 13/76 (17%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
TL+AF+ +G ++VLV +D + G+D+ I +TYIHRAG ARAG+ G C
Sbjct: 723 TLRAFK-EGRLKVLVATDVASRGLDIPNVELIVQTEPPQDPETYIHRAGRTARAGKEGTC 781
Query: 95 FTLLPKDEDKLLYMFQ 110
L ++K YM +
Sbjct: 782 IVLY---QNKTQYMME 794
>gi|423097460|ref|ZP_17085256.1| ATP-dependent RNA helicase, putative [Pseudomonas fluorescens
Q2-87]
gi|397888059|gb|EJL04542.1| ATP-dependent RNA helicase, putative [Pseudomonas fluorescens
Q2-87]
Length = 445
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +Q+LV +D G+D+E + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKAS-EVQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE LL ++ + L +Q ++D P H +P +
Sbjct: 340 ATGQAISLVCADEVNLLSAIEMLTRQTLPRQMEYDFEPEHRVPDTD 385
>gi|343493741|ref|ZP_08732041.1| ATP-dependent RNA helicase RhlE [Vibrio nigripulchritudo ATCC
27043]
gi|342825883|gb|EGU60344.1| ATP-dependent RNA helicase RhlE [Vibrio nigripulchritudo ATCC
27043]
Length = 485
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L+ F+ G ++ LV +D G+D+ + + + Y+HR G RAG++G
Sbjct: 284 KALEHFK-TGQVRALVATDIAARGLDIPQLPQVVNFELPHVPEDYVHRIGRTGRAGESGK 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPI 142
++L+ DE K L+ + K + ++ PVH++P S +++ RP+
Sbjct: 343 AYSLVCADEAKELFAIERLIQKLIPRETVEGYTPVHALPESKLDT-RPV 390
>gi|308806291|ref|XP_003080457.1| DEAD (ISS) [Ostreococcus tauri]
gi|116058917|emb|CAL54624.1| DEAD (ISS) [Ostreococcus tauri]
Length = 419
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 12/106 (11%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFAS--SVANSPKTLKAFRGKGHMQVLVCSDAMTSG 66
+C S + +L L +G ++S S + ++L AF+ K +LV +DA T G
Sbjct: 285 LCASATRARHLYDQLHQIGSFTCFEYSSMASQQHRAQSLSAFQ-KCRRGILVATDAATRG 343
Query: 67 MDVE---------RAAYIKTYIHRAGPRARAGQNGHCFTLLPKDED 103
+D+E +A + +TY+HRAG RAG G C T ED
Sbjct: 344 LDIEGVSIVVSFDQAEHFQTYLHRAGRTGRAGNRGICVTTCSTGED 389
>gi|195051805|ref|XP_001993174.1| GH13670 [Drosophila grimshawi]
gi|193900233|gb|EDV99099.1| GH13670 [Drosophila grimshawi]
Length = 518
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 49/183 (26%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K +YL+ +L L G F++F S+ N+ KT R G H Q
Sbjct: 281 KYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALN 340
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+L+ +D + G+D+ + K YIHR G ARAG++G T++
Sbjct: 341 KFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITIV 400
Query: 99 PKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQANRKRKI 158
+ D LY +R ++LL + P++ + +L+ E V ++A R K+
Sbjct: 401 SQ-YDIELY----QRIEQLLGK----QLPLYKCEEDEVMALQ-----ERV-AEAQRTAKL 445
Query: 159 GFK 161
FK
Sbjct: 446 EFK 448
>gi|260808869|ref|XP_002599229.1| hypothetical protein BRAFLDRAFT_64422 [Branchiostoma floridae]
gi|229284506|gb|EEN55241.1| hypothetical protein BRAFLDRAFT_64422 [Branchiostoma floridae]
Length = 436
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 34/128 (26%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K +YL+ +L L G F+VF S+ N+ +T R G H Q
Sbjct: 228 SKYKDVYLVSILNELAGNSFMVFCSTCNNTQRTAFLLRNLGFNAIPLHGQLSQNSRLGAL 287
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 288 HKFKAKSRSILIATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITF 347
Query: 98 LPKDEDKL 105
+ + + +L
Sbjct: 348 VTQYDVEL 355
>gi|302521780|ref|ZP_07274122.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces sp.
SPB78]
gi|302430675|gb|EFL02491.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces sp.
SPB78]
Length = 485
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG++G
Sbjct: 304 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQTPEDEKTYLHRIGRTGRAGRSGT 362
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 363 AVTLVDWDD 371
>gi|24585582|ref|NP_610090.1| CG9253 [Drosophila melanogaster]
gi|7298752|gb|AAF53963.1| CG9253 [Drosophila melanogaster]
gi|384475998|gb|AFH89832.1| FI20110p1 [Drosophila melanogaster]
Length = 507
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K +YL+ +L L G F++F S+ N+ KT R G H Q
Sbjct: 285 KYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALN 344
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+L+ +D + G+D+ + K YIHR G ARAG++G TL+
Sbjct: 345 KFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLV 404
Query: 99 PK 100
+
Sbjct: 405 SQ 406
>gi|195118551|ref|XP_002003800.1| GI21075 [Drosophila mojavensis]
gi|193914375|gb|EDW13242.1| GI21075 [Drosophila mojavensis]
Length = 515
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K +YL+ +L L G F++F S+ N+ KT R G H Q
Sbjct: 283 KYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALN 342
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+L+ +D + G+D+ + K YIHR G ARAG++G T++
Sbjct: 343 KFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITMV 402
Query: 99 PK 100
+
Sbjct: 403 TQ 404
>gi|194878451|ref|XP_001974067.1| GG21281 [Drosophila erecta]
gi|190657254|gb|EDV54467.1| GG21281 [Drosophila erecta]
Length = 524
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K +YL+ +L L G F++F S+ N+ KT R G H Q
Sbjct: 293 KYKDVYLVHILNELSGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALN 352
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+L+ +D + G+D+ + K YIHR G ARAG++G TL+
Sbjct: 353 KFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLV 412
Query: 99 PK 100
+
Sbjct: 413 SQ 414
>gi|392960905|ref|ZP_10326369.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans DSM
17108]
gi|421054895|ref|ZP_15517859.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B4]
gi|421058120|ref|ZP_15520852.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B3]
gi|421063576|ref|ZP_15525539.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A12]
gi|421071774|ref|ZP_15532887.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A11]
gi|392439998|gb|EIW17686.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B4]
gi|392446362|gb|EIW23647.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A11]
gi|392454472|gb|EIW31304.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans DSM
17108]
gi|392461489|gb|EIW37677.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B3]
gi|392462608|gb|EIW38666.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A12]
Length = 385
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 23/127 (18%)
Query: 3 VNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSV-ANSPKTLKAFRGKGHMQVLVCSD 61
+N S I E+ K IY G + + SSV + K+L+ FR KG++Q+LV SD
Sbjct: 250 INKSDDIEETTEKLIYH-------GLKAASIHGSSVKGDRKKSLEDFR-KGNVQLLVASD 301
Query: 62 AMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVK 112
G+D+ Y+ + Y+HR G RAG++G +++ K E L++
Sbjct: 302 VAARGLDIVGIDYVFNLDLPEDPQVYLHRVGRTGRAGESGIAISIITKQEVALVH----- 356
Query: 113 RFKKLLQ 119
+++KLL+
Sbjct: 357 KYEKLLK 363
>gi|386821623|ref|ZP_10108839.1| DNA/RNA helicase, superfamily II [Joostella marina DSM 19592]
gi|386426729|gb|EIJ40559.1| DNA/RNA helicase, superfamily II [Joostella marina DSM 19592]
Length = 447
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 14/91 (15%)
Query: 48 FRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
FR +GH+ +LV +D G+DV+ +Y+ + Y+HR+G ARAG NG T+L
Sbjct: 289 FR-EGHINILVATDLAARGIDVKDISYVINYHLPDTFEAYVHRSGRTARAGANGLALTVL 347
Query: 99 PKDEDKLLYMFQVK---RFKKLLQQADHDSC 126
++E L F+ + FKK ++AD S
Sbjct: 348 QEEEVSELSEFENELGITFKK-FEKADAKSI 377
>gi|409078236|gb|EKM78599.1| hypothetical protein AGABI1DRAFT_74928 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 602
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 52/159 (32%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAF----------RGKG------ 52
+CES KP+ L+ +L +VF S ++ + ++ F GK
Sbjct: 416 VCESSQKPLMFFHLVFHLNVTDALVFTKSSESTARLVRLFDFFQKWRAVESGKSLVVQAY 475
Query: 53 -------------------HMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGP 84
+ +L+CSD ++ G+D+ +++ + Y+HR G
Sbjct: 476 SSDLSVGERKVILERFKAQEINILICSDLISRGIDISHVSHVVSYDVPVDMRKYVHRVGR 535
Query: 85 RARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123
ARAG++G + L+ + E + FK +L+ ADH
Sbjct: 536 TARAGRSGDAWALVEEQE--------ARYFKNMLRDADH 566
>gi|291453994|ref|ZP_06593384.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
gi|291356943|gb|EFE83845.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
Length = 469
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 15/123 (12%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG+ G
Sbjct: 297 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQTPEDEKTYLHRIGRTGRAGRAGI 355
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQAN 153
TL+ D+ + +Q+ K L+ +D +S E LR ++ +A+
Sbjct: 356 AITLVDWDD---IPRWQL--INKALELTFNDPVETYSTSPHLYEELRIPEGTKGTLPRAD 410
Query: 154 RKR 156
R R
Sbjct: 411 RTR 413
>gi|424887777|ref|ZP_18311380.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393173326|gb|EJC73370.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 505
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 18/110 (16%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
TL++FR G++Q+LV SD G+D+ +++ + Y+HR G RAG++G
Sbjct: 288 TLQSFR-DGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAA 346
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLL-QQADHDSCPVHSIP--SSSIESLRP 141
FTL+ K + K V +KL+ ++ + + V+S+P S +S RP
Sbjct: 347 FTLVTKRDSKF-----VDAIEKLIGEKVEWLNGDVNSLPPAEESADSERP 391
>gi|325271804|ref|ZP_08138271.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
TJI-51]
gi|324103051|gb|EGC00431.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
TJI-51]
Length = 396
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L +F+ + +QVLV +D G+D++ + + Y+HR G RAG
Sbjct: 234 ATRQRALDSFKAR-EIQVLVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAG 292
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE +LL +V + L + + D P H +P +
Sbjct: 293 NKGEAISLVCADEVQLLAAIEVLTRQTLPRHEEPDFIPDHRVPMTD 338
>gi|422587600|ref|ZP_16662270.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|422654670|ref|ZP_16717404.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330873518|gb|EGH07667.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330967687|gb|EGH67947.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 442
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +++LV +D G+D++ + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKSN-EVKILVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
Q G +L+ DE +LL +V + L ++ + D P H +PS+
Sbjct: 340 QTGEAISLVCADEVELLSAIEVLTRQTLERKEEADFEPEHRVPSTD 385
>gi|195401282|ref|XP_002059243.1| GJ16136 [Drosophila virilis]
gi|194156117|gb|EDW71301.1| GJ16136 [Drosophila virilis]
Length = 523
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K +YL+ +L L G F++F S+ N+ KT R G H Q
Sbjct: 288 KYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALN 347
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+L+ +D + G+D+ + K YIHR G ARAG++G T++
Sbjct: 348 KFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITMV 407
Query: 99 PK 100
+
Sbjct: 408 TQ 409
>gi|398931338|ref|ZP_10665140.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM48]
gi|398163790|gb|EJM51940.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM48]
Length = 446
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +Q+LV +D G+D+E + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKAS-EVQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE LL ++ + L +Q + D P H +P +
Sbjct: 340 STGEAISLVCADEVNLLSAIEMLTRQTLTRQNEPDFEPEHRVPDTD 385
>gi|426199228|gb|EKV49153.1| hypothetical protein AGABI2DRAFT_201250 [Agaricus bisporus var.
bisporus H97]
Length = 602
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 74/181 (40%), Gaps = 53/181 (29%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAF----------RGKG------ 52
+CES KP+ L+ +L +VF S ++ + ++ F GK
Sbjct: 416 VCESSQKPLMFFHLVFHLNVTDALVFTKSSESTARLVRLFDFFQKWRTAESGKSLVVQAY 475
Query: 53 -------------------HMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGP 84
+ +L+CSD ++ G+D+ +++ + Y+HR G
Sbjct: 476 SSDLSVGERKVILERFKAQEINILICSDLISRGIDISHVSHVVSYDVPVDMRKYVHRVGR 535
Query: 85 RARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH-DSCPVHSIPSSSIESLRPIY 143
ARAG++G + L+ + E + FK +L+ ADH + + IE L P Y
Sbjct: 536 TARAGRSGDAWALVEEQE--------ARYFKNMLRDADHLNKVGRLRVNEGDIEKLAPGY 587
Query: 144 K 144
+
Sbjct: 588 E 588
>gi|162447374|ref|YP_001620506.1| ATP-dependent RNA helicase, DEAD box containing [Acholeplasma
laidlawii PG-8A]
gi|161985481|gb|ABX81130.1| ATP-dependent RNA helicase, superfamily II [Acholeplasma laidlawii
PG-8A]
Length = 448
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 19 LIPLLRNLGGEKFIVFAS-SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI-- 75
L+ L NLG E + S S A + L F+ KG ++LV +D G+D+E Y+
Sbjct: 260 LVKNLMNLGIESEPIHGSKSQAARERALANFK-KGKTKILVATDIAARGIDIEALDYVIN 318
Query: 76 -------KTYIHRAGPRARAGQNGHCFTLLPKDEDKLL 106
+TYIHR G RAG +G +L+ E KLL
Sbjct: 319 FELPEVPETYIHRIGRTGRAGLSGMALSLVDPSEQKLL 356
>gi|395445596|ref|YP_006385849.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida ND6]
gi|421523851|ref|ZP_15970480.1| DEAD/DEAH box helicase [Pseudomonas putida LS46]
gi|388559593|gb|AFK68734.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida ND6]
gi|402752837|gb|EJX13342.1| DEAD/DEAH box helicase [Pseudomonas putida LS46]
Length = 443
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L +F+ + +QVLV +D G+D++ + + Y+HR G RAG
Sbjct: 281 ATRQRALDSFKAR-EVQVLVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE +LL +V + L + + D P H +P +
Sbjct: 340 NKGEAISLVCADEVQLLAAIEVLTRQTLPRHEEPDFIPEHRVPMTD 385
>gi|152995016|ref|YP_001339851.1| DEAD/DEAH box helicase [Marinomonas sp. MWYL1]
gi|150835940|gb|ABR69916.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
Length = 463
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 51 KGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKD 101
+G +++LV +D G+D+E+ ++ + Y+HR G RAG G +L+ D
Sbjct: 295 EGRIRILVATDIAARGLDIEQLPHVVNFDLPDVAEDYVHRIGRTGRAGATGKAISLVAAD 354
Query: 102 EDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPI 142
E L + K + ++ + D P H +P +++++ RPI
Sbjct: 355 ELDQLRAIERLTQKLIERRYEDDFMPTHMLPDTTLDT-RPI 394
>gi|386014015|ref|YP_005932292.1| DEAD/DEAH box helicase [Pseudomonas putida BIRD-1]
gi|397697647|ref|YP_006535530.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida DOT-T1E]
gi|313500721|gb|ADR62087.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida BIRD-1]
gi|397334377|gb|AFO50736.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida DOT-T1E]
Length = 443
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L +F+ + +QVLV +D G+D++ + + Y+HR G RAG
Sbjct: 281 ATRQRALDSFKAR-EVQVLVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE +LL +V + L + + D P H +P +
Sbjct: 340 NKGEAISLVCADEVQLLAAIEVLTRQTLPRHEEPDFIPEHRVPMTD 385
>gi|431804583|ref|YP_007231486.1| DEAD/DEAH box helicase [Pseudomonas putida HB3267]
gi|430795348|gb|AGA75543.1| DEAD/DEAH box helicase [Pseudomonas putida HB3267]
Length = 443
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L +F+ + +QVLV +D G+D++ + + Y+HR G RAG
Sbjct: 281 ATRQRALDSFKAR-EIQVLVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE +LL +V + L + + D P H +P +
Sbjct: 340 NKGEAISLVCADEVQLLAAIEVLTRQTLPRHEEPDFIPDHRVPMTD 385
>gi|421740361|ref|ZP_16178620.1| DNA/RNA helicase, superfamily II, partial [Streptomyces sp. SM8]
gi|406691234|gb|EKC94996.1| DNA/RNA helicase, superfamily II, partial [Streptomyces sp. SM8]
Length = 415
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 15/123 (12%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG+ G
Sbjct: 209 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQTPEDEKTYLHRIGRTGRAGRAGI 267
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQAN 153
TL+ D+ + +Q+ K L+ +D +S E LR ++ +A+
Sbjct: 268 AITLVDWDD---IPRWQL--INKALELTFNDPVETYSTSPHLYEELRIPEGTKGTLPRAD 322
Query: 154 RKR 156
R R
Sbjct: 323 RTR 325
>gi|318079420|ref|ZP_07986752.1| putative ATP-dependent RNA helicase [Streptomyces sp. SA3_actF]
Length = 461
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG++G
Sbjct: 256 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQTPEDEKTYLHRIGRTGRAGRSGT 314
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 315 AVTLVDWDD 323
>gi|149189294|ref|ZP_01867580.1| DNA and RNA helicase [Vibrio shilonii AK1]
gi|148836853|gb|EDL53804.1| DNA and RNA helicase [Vibrio shilonii AK1]
Length = 477
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 17/135 (12%)
Query: 22 LLRNLGGEKFIVFA----SSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI-- 75
L R L G+K A S K L+ F+ G ++VLV +D G+D+ + +
Sbjct: 259 LARFLEGKKITALAIHGNKSQGARTKALEHFK-TGQIRVLVATDIAARGLDIPQLPQVVN 317
Query: 76 -------KTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSC-P 127
+ Y+HR G RAG+ G ++L+ DE K L+ + + KL+ + + + P
Sbjct: 318 FDLPHVSEDYVHRIGRTGRAGETGKAYSLVCADEAKELFGIE-RLIGKLIDRFELEGFKP 376
Query: 128 VHSIPSSSIESLRPI 142
V+++P S +++ RPI
Sbjct: 377 VNAVPESKLDT-RPI 390
>gi|148549843|ref|YP_001269945.1| DEAD/DEAH box helicase [Pseudomonas putida F1]
gi|148513901|gb|ABQ80761.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
Length = 443
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L +F+ + +QVLV +D G+D++ + + Y+HR G RAG
Sbjct: 281 ATRQRALDSFKAR-EVQVLVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE +LL +V + L + + D P H +P +
Sbjct: 340 NKGEAISLVCADEVQLLAAIEVLTRQTLPRHEEPDFIPEHRVPMTD 385
>gi|339489487|ref|YP_004704015.1| DEAD/DEAH box helicase [Pseudomonas putida S16]
gi|338840330|gb|AEJ15135.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida S16]
Length = 443
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L +F+ + +QVLV +D G+D++ + + Y+HR G RAG
Sbjct: 281 ATRQRALDSFKAR-EIQVLVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE +LL +V + L + + D P H +P +
Sbjct: 340 NKGEAISLVCADEVQLLAAIEVLTRQTLPRHEEPDFIPDHRVPMTD 385
>gi|291230627|ref|XP_002735268.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47-like
[Saccoglossus kowalevskii]
Length = 446
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 36/124 (29%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKT--------------------------L 45
SK K +YL+ +L L G F+VF S+ N+ + L
Sbjct: 246 SKYKDVYLVYILNELAGNSFMVFCSTCNNTQRVALMLRNLGLTAVPLHGQMSQNKRLGML 305
Query: 46 KAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFT 96
F+GK +L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 306 NKFKGKDR-SILIATDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGKSGKAIT 364
Query: 97 LLPK 100
+ +
Sbjct: 365 FVTQ 368
>gi|422300157|ref|ZP_16387690.1| ATP-dependent RNA helicase rhlE [Pseudomonas avellanae BPIC 631]
gi|407987741|gb|EKG30459.1| ATP-dependent RNA helicase rhlE [Pseudomonas avellanae BPIC 631]
Length = 442
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +++LV +D G+D++ + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKSN-EVKILVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
Q G +L+ DE +LL +V + L ++ + D P H +PS+
Sbjct: 340 QTGEAISLVCADEVELLSAIEVLTRQTLERKEEADFEPEHRVPSTD 385
>gi|26991447|ref|NP_746872.1| DEAD/DEAH box helicase [Pseudomonas putida KT2440]
gi|24986522|gb|AAN70336.1|AE016675_6 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
KT2440]
Length = 443
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L +F+ + +QVLV +D G+D++ + + Y+HR G RAG
Sbjct: 281 ATRQRALDSFKAR-EVQVLVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE +LL +V + L + + D P H +P +
Sbjct: 340 NKGEAISLVCADEVQLLAAIEVLTRQTLPRHEEPDFIPEHRVPMTD 385
>gi|422660333|ref|ZP_16722747.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|331018940|gb|EGH98996.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
lachrymans str. M302278]
Length = 442
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +++LV +D G+D++ + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKSN-EVKILVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
Q G +L+ DE +LL +V + L ++ + D P H +PS+
Sbjct: 340 QTGEAISLVCADEVELLSAIEVLTRQTLERKEEPDFEPEHRVPSTD 385
>gi|167035770|ref|YP_001671001.1| DEAD/DEAH box helicase [Pseudomonas putida GB-1]
gi|166862258|gb|ABZ00666.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
Length = 443
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L +F+ + +QVLV +D G+D++ + + Y+HR G RAG
Sbjct: 281 ATRQRALDSFKAR-EVQVLVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIP 132
G +L+ DE +LL +V + L + + D P H +P
Sbjct: 340 NKGEAISLVCADEVQLLAAIEVLTRQTLPRHEEPDFIPDHRVP 382
>gi|118098682|ref|XP_415229.2| PREDICTED: ATP-dependent RNA helicase DDX51 [Gallus gallus]
Length = 764
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 20/114 (17%)
Query: 19 LIPLLRNLGGEKFIVFASSVANSPK--TLKAFRGKGHMQVLVCSDAMTSGMDV------- 69
L L++ GG F+S + + + T+K F +G +Q+L+ +DA G+D+
Sbjct: 618 LFLLVQAFGGITVAEFSSRLPPNERQRTMKEFE-QGKIQLLISTDATARGIDIKGVNCVI 676
Query: 70 --ERAAYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQA 121
+ +I+TYIHR G ARAG+ G F+ ++ Q +RF ++L+ A
Sbjct: 677 NYDTPQFIRTYIHRVGRTARAGKAGLAFS--------MVLRIQERRFLRMLKDA 722
>gi|195155425|ref|XP_002018605.1| GL25891 [Drosophila persimilis]
gi|194114758|gb|EDW36801.1| GL25891 [Drosophila persimilis]
Length = 518
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K +YL+ +L L G F++F S+ N+ KT R G H Q
Sbjct: 293 KYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALN 352
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+L+ +D + G+D+ + K YIHR G ARAG++G T++
Sbjct: 353 KFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITIV 412
Query: 99 PK 100
+
Sbjct: 413 SQ 414
>gi|125987477|ref|XP_001357501.1| GA21647 [Drosophila pseudoobscura pseudoobscura]
gi|54645833|gb|EAL34571.1| GA21647 [Drosophila pseudoobscura pseudoobscura]
Length = 518
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K +YL+ +L L G F++F S+ N+ KT R G H Q
Sbjct: 293 KYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALN 352
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+L+ +D + G+D+ + K YIHR G ARAG++G T++
Sbjct: 353 KFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITIV 412
Query: 99 PK 100
+
Sbjct: 413 SQ 414
>gi|85711377|ref|ZP_01042436.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
gi|85694878|gb|EAQ32817.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
Length = 423
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 39/145 (26%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLK----------AFRGK-------- 51
E KP L+ +LRNL + IVF+ + + + +K A G
Sbjct: 225 AEKTHKPRMLMQILRNLNLPQVIVFSRTKHGANRLVKQLDKDGFLAAAIHGNKSQGARTK 284
Query: 52 -------GHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCF 95
G +QVLV +D G+D+E+ Y+ + Y+HR G RAGQ GH
Sbjct: 285 ALSDFKSGAVQVLVATDIAARGLDIEKLPYVINYDLPQVAEDYVHRIGRTGRAGQVGHAI 344
Query: 96 TLLPKDEDKLLYMFQVKRFKKLLQQ 120
+L+ +E + L K +KL+ Q
Sbjct: 345 SLVMDEEFRTL-----KAIEKLIGQ 364
>gi|319790474|ref|YP_004152107.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
HB-1]
gi|317114976|gb|ADU97466.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
HB-1]
Length = 417
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 24/107 (22%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
++AFR +G ++VLV +D G+D++ + ++Y+HR G RAG+ G
Sbjct: 282 VMRAFR-EGKVKVLVATDVAARGIDIKDVGLVINYELPENPESYVHRIGRTGRAGREGLA 340
Query: 95 FTLLPKDEDKLLYMFQ--------------VKRFKKLLQQADHDSCP 127
+L+ + E + LY + VK KK L +AD +S P
Sbjct: 341 ISLVAEPEKRRLYRIKGLKGVRPERFRVNTVKELKKELLEADANSLP 387
>gi|167526114|ref|XP_001747391.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774226|gb|EDQ87858.1| predicted protein [Monosiga brevicollis MX1]
Length = 504
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 50/120 (41%), Gaps = 36/120 (30%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVAN-----------------------SPKTLKA-- 47
K K YLI L+ L G FI+F S+ N PK L A
Sbjct: 307 KFKDCYLIYLMNQLRGNSFIIFCSTCNNVMKATLVLRDLGFDAVCLHGQMSQPKRLGALA 366
Query: 48 -FRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
F + H +LV +D + G+D+ + K YIHR G ARAG++GH T+
Sbjct: 367 KFTSQSHT-ILVATDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGHAITI 425
>gi|213966785|ref|ZP_03394936.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
T1]
gi|301383294|ref|ZP_07231712.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
tomato Max13]
gi|302062467|ref|ZP_07254008.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
tomato K40]
gi|302133449|ref|ZP_07259439.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|213928635|gb|EEB62179.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
T1]
Length = 442
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +++LV +D G+D++ + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKSN-EVKILVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
Q G +L+ DE +LL +V + L ++ + D P H +PS+
Sbjct: 340 QTGEAISLVCADEVELLSAIEVLTRQTLERKEEPDFEPEHRVPSTD 385
>gi|195443116|ref|XP_002069285.1| GK21047 [Drosophila willistoni]
gi|194165370|gb|EDW80271.1| GK21047 [Drosophila willistoni]
Length = 507
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K +YL+ +L L G F++F S+ N+ KT R G H Q
Sbjct: 279 KYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALN 338
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+L+ +D + G+D+ + K YIHR G ARAG++G T++
Sbjct: 339 KFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGRAITMV 398
Query: 99 PK 100
+
Sbjct: 399 SQ 400
>gi|340776541|ref|ZP_08696484.1| ATP-dependent RNA helicase [Acetobacter aceti NBRC 14818]
Length = 431
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G +QVLV +D G+DV+ ++ ++Y+HR G RAG++G+
Sbjct: 288 RALEAFRA-GDVQVLVATDIAARGIDVDTVTHVFNHDLPSLPESYVHRIGRTGRAGRSGY 346
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS---EYVES 150
TL ++ L+ + + + L DH+ HS + + P+ + V+
Sbjct: 347 AITLCDAEQRAWLHNVEREIGRALTVHTDHEW---HSDEAQNSTMRPPVLGGGPVKQVKP 403
Query: 151 QANRKRKI 158
Q R+RKI
Sbjct: 404 QKVRERKI 411
>gi|307167913|gb|EFN61290.1| Probable ATP-dependent RNA helicase DDX49 [Camponotus floridanus]
Length = 457
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 52 GHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDE 102
H+Q+L+ +D G+D+ + K YIHR G ARAG+NG +L+ ++
Sbjct: 299 NHVQILIATDVAARGLDIPTVELVVNHIIPNVPKEYIHRVGRTARAGRNGMAISLITPND 358
Query: 103 DKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSI---ESLRPIYKSEYVESQANRKRK 157
KLL+M + KL + D V + S+ E+ + ++++ E + KRK
Sbjct: 359 IKLLHMIEDTIGTKLTEYKVDDKEIVTILTQISVAKREAEIRLDETDFYEKKMINKRK 416
>gi|410615743|ref|ZP_11326756.1| ATP-dependent RNA helicase DeaD [Glaciecola psychrophila 170]
gi|410164699|dbj|GAC40645.1| ATP-dependent RNA helicase DeaD [Glaciecola psychrophila 170]
Length = 585
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 30/128 (23%)
Query: 51 KGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKD 101
KG + +LV +D + G+DVER +++ ++Y+HR G RAG+ G +
Sbjct: 295 KGKIDILVATDVVARGLDVERVSHVINFDVPYDTESYVHRIGRTGRAGREGDAILFISHR 354
Query: 102 EDKLLYMFQVKRFKKLLQQADHDSCP-----------------VHSIPSSSIESLRPIYK 144
E ++L F ++R + Q D + P + +I +SIE+L PI +
Sbjct: 355 EKRML--FSIERATR--QTIDAMTIPSISQLNETRLSRFKSSVIEAIGDASIETLIPIVE 410
Query: 145 SEYVESQA 152
S E++A
Sbjct: 411 SIQAETEA 418
>gi|241751464|ref|XP_002406051.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
gi|215506028|gb|EEC15522.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
Length = 393
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 22/149 (14%)
Query: 22 LLRNLGGEKFIVFAS--SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERA------- 72
+++ +GG + F+S S + L+ F G + +LVCS+ + G+DV
Sbjct: 245 VIKEMGGVRVEEFSSDLSATERARVLRRF-ASGGLDLLVCSNVLARGLDVANVRNVVCYD 303
Query: 73 --AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHS 130
Y+KTY+HR G ARAG G T L + Q++ F+ +L A
Sbjct: 304 PPKYVKTYVHRVGRTARAGVPGTAVTFLRQG--------QLEAFQTMLSSAGKSPVEALE 355
Query: 131 IPSSSIESLRPIYKS--EYVESQANRKRK 157
+ +E Y+ + VE+ R++K
Sbjct: 356 EGEAGLEVFHEKYRVALKAVEAAVGREKK 384
>gi|291437415|ref|ZP_06576805.1| helicase [Streptomyces ghanaensis ATCC 14672]
gi|291340310|gb|EFE67266.1| helicase [Streptomyces ghanaensis ATCC 14672]
Length = 463
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG G
Sbjct: 298 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGT 356
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 357 AITLVDWDD 365
>gi|390955309|ref|YP_006419067.1| DNA/RNA helicase [Aequorivita sublithincola DSM 14238]
gi|390421295|gb|AFL82052.1| DNA/RNA helicase, superfamily II [Aequorivita sublithincola DSM
14238]
Length = 450
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 15/85 (17%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ + FR GH+ +LV +D G+DV+ +Y+ +TY+HR+G ARAG G
Sbjct: 284 RVMGQFR-DGHIDILVATDLAARGLDVKEISYVINYHLPDTYETYVHRSGRTARAGAAGL 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLL 118
T+L ++E +F++ F++ L
Sbjct: 343 SVTILQQEE-----VFEIPEFEEEL 362
>gi|340711741|ref|XP_003394428.1| PREDICTED: probable ATP-dependent RNA helicase Dbp73D-like [Bombus
terrestris]
Length = 659
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 51/168 (30%), Positives = 74/168 (44%), Gaps = 51/168 (30%)
Query: 10 CESKLKPIYLIPLL-RNLGGEKFIVFASSVANSPKT---LKAFRGK-------------- 51
CE++ KP+ L L+ RN K +VF +S + + L++ K
Sbjct: 462 CEAEYKPVALYQLIIRNGITSKVLVFTNSGGTAHRLTILLQSLLSKENIVVGELSAQLVS 521
Query: 52 ------------GHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQ 90
G +Q+LVCSDA+ G+D+ + +I YIHRAG RAG+
Sbjct: 522 KEREDILTKFSSGKIQILVCSDALARGVDIPNVQLVISYDLPKHINGYIHRAGRTGRAGK 581
Query: 91 NGHCFTLL-PKDEDKLLYMFQVKRFKKLLQQADHDSCP-VHSIPSSSI 136
+G ++L PK QVK FK +L A H P V I S+I
Sbjct: 582 SGTAISILTPK---------QVKIFKHMLNNA-HKVIPHVEKIELSAI 619
>gi|395801595|ref|ZP_10480854.1| DEAD/DEAH box helicase [Flavobacterium sp. F52]
gi|395436464|gb|EJG02399.1| DEAD/DEAH box helicase [Flavobacterium sp. F52]
Length = 444
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 15/85 (17%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ ++ FR +GH+ +LV +D G+DV+ +Y+ + Y+HR+G ARAG G
Sbjct: 284 RIMEQFR-EGHINILVATDLAARGIDVKEISYVINYHLPDTYENYVHRSGRTARAGAKGL 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLL 118
T+L ++E +F++ F++ L
Sbjct: 343 SLTVLQQEE-----VFEIADFEREL 362
>gi|240273677|gb|EER37197.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus H143]
Length = 243
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 36/123 (29%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPK--------------------------TLK 46
K K +YL+ LL G+ IVF +V + + L
Sbjct: 42 KYKDVYLVYLLNEYAGQSAIVFTRTVNETQRLAILLRTLGFGSIPLHGQLSQSSRLGALS 101
Query: 47 AFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
FR + +LV +D G+D+ + KTYIHR G ARAG++GH F++
Sbjct: 102 KFRSRSR-DILVATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSI 160
Query: 98 LPK 100
+ +
Sbjct: 161 VTQ 163
>gi|313228985|emb|CBY18137.1| unnamed protein product [Oikopleura dioica]
Length = 451
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 69/180 (38%), Gaps = 42/180 (23%)
Query: 15 KPIYLIPLLRNLGGEKFIVFASSVANSP--------------------------KTLKAF 48
K YL+ LL L G F++F S+ A + L F
Sbjct: 252 KECYLVSLLNELQGSSFMIFTSTCAKTSLIARLVKRLGYDSVPLHGQMSQQKRLGALARF 311
Query: 49 RGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLP 99
+GK +LVC+D + G+DV + K YIHR G ARAG+ G T +
Sbjct: 312 KGKSR-SILVCTDVASRGLDVPHVDCVINYDVPTNTKDYIHRVGRTARAGRAGKSVTFVS 370
Query: 100 KDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPS--SSIESLRPIYKSEYVESQANRKRK 157
+ + +L + KKL D C + + ++ + I E E + RK K
Sbjct: 371 QYDVELYQKIEAHIGKKL----DQWPCEKDEVMALKERVDEAKRIAVQEIKEEEGKRKSK 426
>gi|449684802|ref|XP_002158629.2| PREDICTED: eukaryotic translation initiation factor 6-like [Hydra
magnipapillata]
Length = 245
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 14/103 (13%)
Query: 1 MSVNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANSPK--TLKAFRGKGHMQVLV 58
+S L + ++ P++L LL+++GG F+S++ + + ++ F+ G + L+
Sbjct: 133 VSAGLRDMVAVVRVLPLHL--LLQSIGGFTVAEFSSNLTETQRKGIIRDFK-NGSIDALI 189
Query: 59 CSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNG 92
SDAM GMD++ + KTY+HR G ARAG G
Sbjct: 190 SSDAMARGMDIDNVNMVVNYDSPANSKTYVHRVGRTARAGNRG 232
>gi|418471750|ref|ZP_13041547.1| helicase, partial [Streptomyces coelicoflavus ZG0656]
gi|371547628|gb|EHN75991.1| helicase, partial [Streptomyces coelicoflavus ZG0656]
Length = 434
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG G
Sbjct: 263 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGT 321
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 322 AITLVDWDD 330
>gi|221133986|ref|ZP_03560291.1| ATP-dependent RNA helicase [Glaciecola sp. HTCC2999]
Length = 622
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 24/125 (19%)
Query: 52 GHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDE 102
G + +L+ +D + G+DVER +++ ++Y+HR G RAG+ G + E
Sbjct: 295 GSIDILIATDVVARGLDVERVSHVINFDIPYDTESYVHRIGRTGRAGRQGDAILFISHRE 354
Query: 103 DKLLYMFQVKRFKKLLQQADHDSCP--------------VHSIPSSSIESLRPIYKSEYV 148
+LL+ + K K+ ++Q S V +I SI+SL PI +
Sbjct: 355 KRLLFQIE-KTTKQSIEQMPIPSISEMNESRLVRFKESVVEAIEDDSIQSLIPIIEMIKA 413
Query: 149 ESQAN 153
E++A+
Sbjct: 414 ETEAD 418
>gi|455647332|gb|EMF26309.1| ATP-dependent RNA helicase, partial [Streptomyces gancidicus BKS
13-15]
Length = 464
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG G
Sbjct: 263 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVVNYQTPEDEKTYLHRIGRTGRAGAKGT 321
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 322 AITLVDWDD 330
>gi|28871796|ref|NP_794415.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
str. DC3000]
gi|28855048|gb|AAO58110.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 442
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +++LV +D G+D++ + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKSN-DVKILVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
Q G +L+ DE +LL +V + L ++ + D P H +PS+
Sbjct: 340 QTGEAISLVCADEVELLSAIEVLTRQTLERKEEPDFEPEHRVPSTD 385
>gi|349685699|ref|ZP_08896841.1| DNA/RNA helicase [Gluconacetobacter oboediens 174Bp2]
Length = 525
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 10/72 (13%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
TL+AF+ G +++LVCSD G+D+ +++ + Y+HR G RAG+ GH
Sbjct: 330 TLEAFK-SGELKILVCSDIAARGIDIGGLSHVFNFDVPFHAEDYVHRIGRTGRAGRTGHA 388
Query: 95 FTLLPKDEDKLL 106
+TL DE+ L+
Sbjct: 389 YTLATPDEEALV 400
>gi|398954425|ref|ZP_10675961.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM33]
gi|398152444|gb|EJM40963.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM33]
Length = 446
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +Q+LV +D G+D+E + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKAS-EVQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE LL ++ + L +Q + D P H +P +
Sbjct: 340 STGEAISLVCADEVNLLSAIEMLTRQTLKRQNEPDFEPEHRVPDTD 385
>gi|398896410|ref|ZP_10647539.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM55]
gi|398178670|gb|EJM66315.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM55]
Length = 445
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +Q+LV +D G+D+E + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKAS-EVQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE LL ++ + L +Q + D P H +P +
Sbjct: 340 STGEAISLVCADEVNLLSAIEMLTRQTLKRQNEPDFEPEHRVPDTD 385
>gi|302553973|ref|ZP_07306315.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces
viridochromogenes DSM 40736]
gi|302471591|gb|EFL34684.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces
viridochromogenes DSM 40736]
Length = 475
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG G
Sbjct: 267 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGT 325
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 326 AITLVDWDD 334
>gi|426411630|ref|YP_007031729.1| ATP-dependent RNA helicase [Pseudomonas sp. UW4]
gi|426269847|gb|AFY21924.1| ATP-dependent RNA helicase [Pseudomonas sp. UW4]
Length = 446
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +Q+LV +D G+D+E + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKAS-EVQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE LL ++ + L +Q + D P H +P +
Sbjct: 340 STGEAISLVCADEVNLLSAIEMLTRQTLKRQNEPDFEPEHRVPDTD 385
>gi|398910036|ref|ZP_10654849.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM49]
gi|398186868|gb|EJM74228.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM49]
Length = 446
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +Q+LV +D G+D+E + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKAS-EVQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE LL ++ + L +Q + D P H +P +
Sbjct: 340 STGEAISLVCADEVNLLSAIEMLTRQTLKRQNEPDFEPEHRVPDTD 385
>gi|421501957|ref|ZP_15948913.1| DEAD/DEAH box helicase [Pseudomonas mendocina DLHK]
gi|400347241|gb|EJO95595.1| DEAD/DEAH box helicase [Pseudomonas mendocina DLHK]
Length = 448
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 10/105 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+ F+ G +Q+LV +D G+D++ + + Y+HR G RAG G
Sbjct: 285 RALERFKA-GEVQILVATDVAARGLDIDDLPLVVNLDLPINAEDYVHRIGRTGRAGSTGE 343
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIES 138
+L+ DE +LL + + L ++ + D P H +P ++I+
Sbjct: 344 AVSLVCADEVELLAAIERLIRQVLPRREEPDFIPDHRVPQTTIDG 388
>gi|408672679|ref|YP_006872427.1| DEAD/DEAH box helicase domain protein [Emticicia oligotrophica DSM
17448]
gi|387854303|gb|AFK02400.1| DEAD/DEAH box helicase domain protein [Emticicia oligotrophica DSM
17448]
Length = 369
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 36/146 (24%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVAN--------------------------SP 42
IC K YL+ L++ G + I+F + A+
Sbjct: 224 ICTLNQKFDYLVQFLQSQGAARGIIFCRTKADVEVVTRKLSALKFSVEALHGDLEQRDRE 283
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K ++AF+ K +Q++V +D G+DVE AY+ + Y HR+G ARAG+ G
Sbjct: 284 KVMRAFKNK-KVQMIVATDVAARGIDVEGLAYVAHYQLPDQLEYYTHRSGRTARAGKRGI 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQ 119
+ + +DE K++ + K K L+
Sbjct: 343 SISFITRDELKMINAIEKKLNIKFLK 368
>gi|156548270|ref|XP_001601432.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Nasonia
vitripennis]
Length = 460
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKGHMQV---------------- 56
K K +YL+ +L L G F++F S+ N+ +T R G M V
Sbjct: 248 KFKDVYLVHILNELSGNSFMIFCSTCNNTMRTALLLRSLGFMAVPLHGQMSQNKRIAALT 307
Query: 57 ---------LVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
L+ +D + G+D+ + K YIHR G ARAG++G T +
Sbjct: 308 KFKAKNRSILISTDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGISVTFV 367
Query: 99 PK 100
+
Sbjct: 368 TQ 369
>gi|146308743|ref|YP_001189208.1| DEAD/DEAH box helicase [Pseudomonas mendocina ymp]
gi|145576944|gb|ABP86476.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
Length = 447
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+ F+ G +Q+LV +D G+D++ + + Y+HR G RAG G
Sbjct: 285 RALERFKA-GEVQILVATDVAARGLDIDDLPLVVNLDLPINAEDYVHRIGRTGRAGSTGE 343
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIE 137
+L+ DE +LL + + L ++ + D P H +P ++I+
Sbjct: 344 AVSLVCADEVELLAAIERLIRQVLPRREEPDFIPDHRVPQTTID 387
>gi|443468655|ref|ZP_21058862.1| ATP-dependent RNA helicase [Pseudomonas pseudoalcaligenes KF707]
gi|442897874|gb|ELS24691.1| ATP-dependent RNA helicase [Pseudomonas pseudoalcaligenes KF707]
Length = 439
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 75/181 (41%), Gaps = 46/181 (25%)
Query: 1 MSVNLSPQICESKLKPIYLIP------------LLRNLGGEKFIVFASS----------- 37
+S+ +SP+ ++ +LIP LL + G + +VFA +
Sbjct: 205 LSIEVSPRNAAARSVSQWLIPVDKKRKSELFLHLLEDRGWGQVLVFAKTRKGVDQLVDEL 264
Query: 38 -----VANS-------PKTLKAFR--GKGHMQVLVCSDAMTSGMDVERAAYI-------- 75
A+S P L+A + G +QVLV +D G+D++ +
Sbjct: 265 QARGLAADSIHGDKPQPSRLRALQRFKAGEVQVLVATDVAARGLDIDDLPLVVNFDLPIV 324
Query: 76 -KTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSS 134
+ Y+HR G RAG G +L+ DE +LL +V + L ++ + P H +P +
Sbjct: 325 AEDYVHRIGRTGRAGATGEAVSLVCADEVQLLSAIEVLTRQTLQRRDEPGFVPDHRVPQT 384
Query: 135 S 135
Sbjct: 385 D 385
>gi|397634960|gb|EJK71658.1| hypothetical protein THAOC_06880 [Thalassiosira oceanica]
Length = 790
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 19/103 (18%)
Query: 54 MQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGHCFTLLPKDEDK 104
+ VLVCSD M GMD+ + ++ KTYIHR G AR G+ G +L
Sbjct: 663 VSVLVCSDGMARGMDLPSVGVVINYDVPSFAKTYIHRCGRTARCGRTGRAINVLKGG--- 719
Query: 105 LLYMFQVKRFKKLLQQADHDSCPVH--SIPSSSIESLRPIYKS 145
QV +F+K+ D + VH S+ ++ P+YK+
Sbjct: 720 -----QVNKFRKMRSLIDGGADAVHEGSVKKDLVKGALPLYKA 757
>gi|154284444|ref|XP_001543017.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1]
gi|160358658|sp|A6QRQ7.1|RRP3_AJECN RecName: Full=ATP-dependent rRNA helicase RRP3
gi|150406658|gb|EDN02199.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1]
Length = 485
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K IYL+ LL G+ IVF +V + + R G H Q
Sbjct: 284 KYKDIYLVYLLNEYAGQSAIVFTRTVNETQRLAILLRALGFGSIPLHGQLSQSSRLGALS 343
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+LV +D G+D+ + KTYIHR G ARAG++GH F+++
Sbjct: 344 KFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIV 403
Query: 99 PK 100
+
Sbjct: 404 TQ 405
>gi|156043944|ref|XP_001588528.1| hypothetical protein SS1G_10075 [Sclerotinia sclerotiorum 1980]
gi|154694464|gb|EDN94202.1| hypothetical protein SS1G_10075 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 821
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAGQNGHC 94
+L +F +G +Q+LV SD ++ G+D+ A+ I Y+HR G ARAG+ GH
Sbjct: 697 SLASF-SRGKLQILVASDLVSRGLDLPDLAHVINYDVPTSITNYVHRVGRTARAGRQGHA 755
Query: 95 FTLLPKDEDKLLY 107
+TL+ E + +
Sbjct: 756 WTLVGNSEARWFF 768
>gi|398873687|ref|ZP_10628940.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM74]
gi|398198842|gb|EJM85794.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM74]
Length = 446
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +Q+LV +D G+D+E + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKAS-EVQILVATDVAARGLDIEDLPMVVNFDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE LL ++ + L +Q + D P H +P +
Sbjct: 340 STGEAISLVCADEVNLLSAIEMLTRQTLKRQNEPDFEPEHRVPDTD 385
>gi|391342948|ref|XP_003745777.1| PREDICTED: ATP-dependent RNA helicase p62-like [Metaseiulus
occidentalis]
Length = 541
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A K L FR G ++VLV +D G+DV+ AY+ + YIHR G AR+
Sbjct: 388 AQRDKILYQFRC-GRLEVLVATDVAARGLDVDDIAYVINYDYPNNSEDYIHRIGRTARSN 446
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCP 127
+ G FT+ K + K Q + ++L++A D P
Sbjct: 447 KTGTAFTMFTKKDSK-----QARDLVQVLKEAKQDVNP 479
>gi|148264031|ref|YP_001230737.1| DEAD/DEAH box helicase [Geobacter uraniireducens Rf4]
gi|146397531|gb|ABQ26164.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
Rf4]
Length = 438
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 19/116 (16%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL F+ +G +VLV +D G+D+ER ++ + Y+HR G RAG+NG
Sbjct: 285 RTLAEFK-RGEFRVLVATDVAARGLDIERLPHVVNYDLPQVPEDYVHRIGRTGRAGENGV 343
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVE 149
+L+ +E LL + KLL+ A P+ ++ ++R + KS+ ++
Sbjct: 344 ALSLVSHEEQSLLQAIE-----KLLKYA----IPLQTLAEFPQYAVRRVDKSKEIK 390
>gi|410631430|ref|ZP_11342105.1| ATP-dependent RNA helicase DeaD [Glaciecola arctica BSs20135]
gi|410148876|dbj|GAC18972.1| ATP-dependent RNA helicase DeaD [Glaciecola arctica BSs20135]
Length = 585
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 30/128 (23%)
Query: 51 KGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKD 101
KG + +LV +D + G+DVER +++ ++Y+HR G RAG+ G +
Sbjct: 295 KGKIDILVATDVVARGLDVERVSHVINFDVPYDTESYVHRIGRTGRAGREGDAILFISHR 354
Query: 102 EDKLLYMFQVKRFKKLLQQADHDSCP-----------------VHSIPSSSIESLRPIYK 144
E ++L F ++R + Q D + P + +I SSIE+L PI +
Sbjct: 355 EKRML--FSIERATR--QTIDSMTIPSISQLNETRLSRFKNSVIEAIGDSSIETLIPIVE 410
Query: 145 SEYVESQA 152
S E+ A
Sbjct: 411 SIQEETDA 418
>gi|312370859|gb|EFR19169.1| hypothetical protein AND_22947 [Anopheles darlingi]
Length = 490
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRG--------KGHM--------- 54
+K K +YL+ +L L G F++F S+ N+ +T R G M
Sbjct: 271 AKYKDVYLVHILNELAGNSFMIFCSTCNNTVRTALMLRALGLAAVPLHGQMTQNKRLAAL 330
Query: 55 --------QVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
Q+L+ +D + G+D+ + K YIHR G ARAG+ G T
Sbjct: 331 NKFKSQTRQILISTDVASRGLDIPHVDVVLNLDIPMHSKDYIHRVGRTARAGRAGQAITF 390
Query: 98 LPK 100
+ +
Sbjct: 391 VTQ 393
>gi|51244788|ref|YP_064672.1| ATP-dependent RNA helicase [Desulfotalea psychrophila LSv54]
gi|50875825|emb|CAG35665.1| probable ATP-dependent RNA helicase [Desulfotalea psychrophila
LSv54]
Length = 423
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 13/127 (10%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G +Q+LV +D G+D++ ++ + YIHR G RAG +G
Sbjct: 285 KALAEFK-NGTVQILVATDIAARGLDIDLLPHVVNFDLPHVQEDYIHRIGRTGRAGASGE 343
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSC-PVHSIPSSSIESLRPIYKSEYVESQA 152
+L+ DE LL + + KK+L + + PVH +P S + + RP ++
Sbjct: 344 AISLVCADEFALLADIE-RLIKKILPRKSVEGFEPVHPLPESCLNT-RPFRAKSPKKNTE 401
Query: 153 NRKRKIG 159
R R+ G
Sbjct: 402 GRTRRQG 408
>gi|441183147|ref|ZP_20970357.1| putative ATP-dependent RNA helicase, partial [Streptomyces rimosus
subsp. rimosus ATCC 10970]
gi|440614145|gb|ELQ77454.1| putative ATP-dependent RNA helicase, partial [Streptomyces rimosus
subsp. rimosus ATCC 10970]
Length = 436
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG G
Sbjct: 263 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQTPEDEKTYLHRIGRTGRAGAKGT 321
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 322 AVTLVDWDD 330
>gi|295670994|ref|XP_002796044.1| DEAD-box ATP-dependent RNA helicase [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284177|gb|EEH39743.1| DEAD-box ATP-dependent RNA helicase [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 319
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K IYL+ LL G+ I+F +V + + R G H Q
Sbjct: 118 KYKDIYLVYLLNEFAGQSAIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSSRLGALS 177
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+LV +D G+D+ + KTYIHR G ARAG++GH F+ +
Sbjct: 178 KFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFSFV 237
Query: 99 PK 100
+
Sbjct: 238 TQ 239
>gi|398869109|ref|ZP_10624494.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM78]
gi|398231623|gb|EJN17609.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM78]
Length = 446
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 53 HMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDED 103
+Q+LV +D G+D+E + + YIHR G RAG G +L+ DE
Sbjct: 294 EVQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCADEV 353
Query: 104 KLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
LL ++ + L +Q + D P H +P +
Sbjct: 354 NLLSAIEMLTRQTLKRQNEPDFEPEHRVPDTD 385
>gi|193596603|ref|XP_001949748.1| PREDICTED: probable ATP-dependent RNA helicase Dbp73D-like
[Acyrthosiphon pisum]
Length = 528
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 46/177 (25%), Positives = 69/177 (38%), Gaps = 50/177 (28%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASS------------------VANSP-------- 42
+C + KP+ L L+R+ G ++ I F S NSP
Sbjct: 329 LCPEENKPLTLYHLIRSKGLKRVICFVKSKIEVHRLTRLLCKLSEFDTNNSPLRVNEISS 388
Query: 43 -KTLKAFRG------KGHMQVLVCSDAMTSGMDVERAA---------YIKTYIHRAGPRA 86
T KA G G + VL+C+D++ G+D+E + Y K YIHR G A
Sbjct: 389 DVTQKAHSGYIKQFSNGKIDVLICTDSLARGIDIELISCVILYNVPKYPKNYIHRIGRTA 448
Query: 87 RAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIY 143
RAG G T + + +L F+ +L A S + S +E +Y
Sbjct: 449 RAGHKGKAITFVTPEHKEL--------FENVLNSAGKTSLKNMKVDISDLEQYEQMY 497
>gi|398406547|ref|XP_003854739.1| RNA-dependent ATPase [Zymoseptoria tritici IPO323]
gi|339474623|gb|EGP89715.1| hypothetical protein MYCGRDRAFT_84402 [Zymoseptoria tritici IPO323]
Length = 446
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 36/123 (29%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPK--------------------------TLK 46
K K IYL+ LL G+ IVF ++ + + L
Sbjct: 261 KFKDIYLVYLLNEFAGQTCIVFTRTINETARIAFLLRALGRSAIPLHGQMNQSARLGALN 320
Query: 47 AFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
FRG GH +LV +D G+D+ + KTY+HR G ARAG++G ++
Sbjct: 321 KFRG-GHRDILVATDVAARGLDIPSVDLVLNFDLPPDSKTYVHRVGRTARAGKSGVAISV 379
Query: 98 LPK 100
+ +
Sbjct: 380 VTQ 382
>gi|448746637|ref|ZP_21728302.1| DEAD-like helicase [Halomonas titanicae BH1]
gi|445565565|gb|ELY21674.1| DEAD-like helicase [Halomonas titanicae BH1]
Length = 418
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L AF+ G +QVLV +D G+D+ ++ + Y+HR G RAG NG
Sbjct: 284 RALTAFK-SGDLQVLVATDIAARGLDINELPHVVNFDLPNVAEDYVHRIGRTGRAGSNGE 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLR 140
+L+ DED LL + +KL + + P SI IE+ R
Sbjct: 343 AVSLVCVDEDALLGNIERLIKQKLTKHIEPGFEPDPSIKPEPIENGR 389
>gi|398782731|ref|ZP_10546432.1| DEAD/DEAH box helicase, partial [Streptomyces auratus AGR0001]
gi|396996493|gb|EJJ07482.1| DEAD/DEAH box helicase, partial [Streptomyces auratus AGR0001]
Length = 348
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG G
Sbjct: 210 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGAKGT 268
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 269 AVTLVDWDD 277
>gi|328702076|ref|XP_001949723.2| PREDICTED: probable ATP-dependent RNA helicase Dbp73D-like
[Acyrthosiphon pisum]
Length = 528
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 46/177 (25%), Positives = 69/177 (38%), Gaps = 50/177 (28%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASS------------------VANSP-------- 42
+C + KP+ L L+R+ G ++ I F S NSP
Sbjct: 329 LCPEENKPLTLYHLIRSKGLKRVICFVKSKIEVHRLTRLLCKLSEFDTNNSPLRVNEISS 388
Query: 43 -KTLKAFRG------KGHMQVLVCSDAMTSGMDVERAA---------YIKTYIHRAGPRA 86
T KA G G + VL+C+D++ G+D+E + Y K YIHR G A
Sbjct: 389 DVTQKAHSGYIKQFSNGKIDVLICTDSLARGIDIELISCVILYNVPKYPKNYIHRIGRTA 448
Query: 87 RAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIY 143
RAG G T + + +L F+ +L A S + S +E +Y
Sbjct: 449 RAGHKGKAITFVTPEHKEL--------FENVLNSAGKTSLKNMKVDISDLEQYEQMY 497
>gi|340372039|ref|XP_003384552.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Amphimedon queenslandica]
Length = 451
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------------------- 52
SK K YL+ +L G F+VF S+ AN+ +T R G
Sbjct: 249 SKYKDCYLVSILNEFAGNSFMVFCSTCANTQRTAVMLRNLGLPAIPLYGKMAQMKRLGAL 308
Query: 53 ------HMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 309 SKFKSKSRSILIATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGRAITF 368
Query: 98 LPK 100
+ +
Sbjct: 369 VTQ 371
>gi|405964769|gb|EKC30218.1| Putative ATP-dependent RNA helicase DDX47 [Crassostrea gigas]
Length = 1146
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 34/120 (28%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K +YL+ +L L G F+VF S+ AN+ + R G H Q
Sbjct: 263 KFKDVYLVYILNELAGNSFMVFCSTCANTQRVALMLRNLGLTAIPLHGQMSQSKRLGALN 322
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+L+ +D + G+D+ + K YIHR G ARAG++G T +
Sbjct: 323 KFKSKNRSILIATDVASRGLDIPHVDVVLNLDIPTHSKDYIHRVGRTARAGRSGVAITFV 382
>gi|392542118|ref|ZP_10289255.1| ATP-dependent RNA helicase [Pseudoalteromonas piscicida JCM 20779]
Length = 411
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G ++VLV +D G+D++ Y+ + Y+HR G RAGQNG
Sbjct: 284 KALSQFK-SGEIRVLVATDVAAHGIDIDSLNYVFNAELPYVAEDYVHRIGRSGRAGQNGQ 342
Query: 94 CFTLLPKDEDKLLYMFQV 111
+L+ DE LL ++
Sbjct: 343 AISLVSIDEQWLLEEIEI 360
>gi|409200280|ref|ZP_11228483.1| ATP-dependent RNA helicase [Pseudoalteromonas flavipulchra JG1]
Length = 411
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G ++VLV +D G+D++ Y+ + Y+HR G RAGQNG
Sbjct: 284 KALSQFKS-GEIRVLVATDVAARGIDIDSLNYVCNAELPYVAEDYVHRIGRSGRAGQNGQ 342
Query: 94 CFTLLPKDEDKLLYMFQV 111
+L+ DE LL ++
Sbjct: 343 AISLVSIDEQWLLEEIEI 360
>gi|380018891|ref|XP_003693352.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
Dbp73D-like [Apis florea]
Length = 577
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 53/173 (30%), Positives = 78/173 (45%), Gaps = 38/173 (21%)
Query: 19 LIPLLRNLGGEKFIVFASSVAN-----SPKTLKAFRGKGHMQVLVCSDAMTSGMDV---- 69
L LL++L EK IV A K L F G +Q+L+CSDA+ G+D+
Sbjct: 415 LTILLQSLLSEKNIVVGELSAQLVSKEREKILNKFI-NGKIQILICSDALARGVDIPDIQ 473
Query: 70 -----ERAAYIKTYIHRAGPRARAGQNGHCFTLL-PKDEDKLLYMFQVKRFKKLLQQADH 123
+ +I YIHRAG RAG++G ++L PK QV FK +L A
Sbjct: 474 LVISYDLPKHINGYIHRAGRTGRAGKSGTAISILTPK---------QVGIFKNMLNNAHK 524
Query: 124 -----DSCPVHSIP-----SSSIESLRPIYKSEYVESQANRKRKIGFKLSRMV 166
D + SI S+ I+ L+ + + +E Q N R K +R++
Sbjct: 525 VIPNIDKLDLSSIINEIDYSNHIDKLKHVLE---IEKQNNLVRIKTVKRTRLI 574
>gi|399028344|ref|ZP_10729604.1| DNA/RNA helicase, superfamily II [Flavobacterium sp. CF136]
gi|398074078|gb|EJL65234.1| DNA/RNA helicase, superfamily II [Flavobacterium sp. CF136]
Length = 444
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ ++ FR +GH+ +L+ +D G+DV+ +Y+ +TY+HR+G ARAG G
Sbjct: 284 RIMEQFR-EGHINILIATDLAARGIDVKEISYVVNYHLPDTYETYVHRSGRTARAGAKGL 342
Query: 94 CFTLLPKDE 102
T+L ++E
Sbjct: 343 SLTVLQEEE 351
>gi|244539109|dbj|BAH83152.1| ATP-dependent RNA helicase [Candidatus Ishikawaella capsulata
Mpkobe]
Length = 562
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 10/77 (12%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
KTL+ F+ G++ +L+ +D G+DVER + + ++YIHR G RAG+ G
Sbjct: 285 KTLERFKN-GNLDILIATDVAARGLDVERISLVINYDIPLDVESYIHRIGRTGRAGRAGR 343
Query: 94 CFTLLPKDEDKLLYMFQ 110
+ + E +LLY +
Sbjct: 344 ALLFVERRERRLLYNIE 360
>gi|352100041|ref|ZP_08957968.1| ATP-dependent RNA helicase RhlE [Halomonas sp. HAL1]
gi|350601389|gb|EHA17435.1| ATP-dependent RNA helicase RhlE [Halomonas sp. HAL1]
Length = 420
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 22/124 (17%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L AF+ G +QVLV +D G+D+ ++ + Y+HR G RAG NG
Sbjct: 284 RALTAFK-SGDLQVLVATDIAARGLDINELPHVVNFDLPNVAEDYVHRIGRTGRAGSNGE 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQAN 153
+L+ DED LL ++L++Q + P H P + P K E +E+
Sbjct: 343 AVSLVCVDEDGLL-----GNIERLIKQ----TLPKHIEPGFEPD---PTIKPEPIENGRR 390
Query: 154 RKRK 157
+R+
Sbjct: 391 NQRQ 394
>gi|308484167|ref|XP_003104284.1| hypothetical protein CRE_25008 [Caenorhabditis remanei]
gi|308258253|gb|EFP02206.1| hypothetical protein CRE_25008 [Caenorhabditis remanei]
Length = 572
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 12/129 (9%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCF 95
L AFR K + V++C+D + G+D+ + KTYIHR G ARAG+ G
Sbjct: 331 LSAFRSKT-LNVIICTDVASRGLDIPHVDLVVNHNVPQCAKTYIHRVGRSARAGRFGSAL 389
Query: 96 TLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQANRK 155
+ + + + +LL + KKL + +S S S + + R I+K+ +A++
Sbjct: 390 SFVTQYDVELLQAVEQTIGKKLEELKIQNSEKFDSKASKARQITRKIWKNSI--QKASKA 447
Query: 156 RKIGFKLSR 164
R+I K+ +
Sbjct: 448 RQITRKIWK 456
>gi|384496820|gb|EIE87311.1| hypothetical protein RO3G_12022 [Rhizopus delemar RA 99-880]
Length = 665
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A+ T+KAFR +G + +VC+D + G+D+ + + +TY+HR+G RAG
Sbjct: 359 ASREATMKAFR-EGKYKCIVCTDVLARGLDIPQVDLVINCQPPKDPETYVHRSGRTGRAG 417
Query: 90 QNGHCFTLLPKDEDKLL 106
++G C T E+ LL
Sbjct: 418 RSGVCVTFYKPAEEGLL 434
>gi|383450069|ref|YP_005356790.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Flavobacterium
indicum GPTSA100-9]
gi|380501691|emb|CCG52733.1| Probable ATP-dependent RNA helicase, DEAD/DEAH box family
[Flavobacterium indicum GPTSA100-9]
Length = 626
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 37 SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRAR 87
S A +K+FRG+ +Q+LV +D G+DV+ + I+TY HR+G R
Sbjct: 277 SQAQRDAVMKSFRGR-QIQMLVATDVAARGIDVDNVTHVINYQLPDEIETYTHRSGRTGR 335
Query: 88 AGQNGHCFTLLPKDE 102
AG++G F ++ K E
Sbjct: 336 AGKSGTSFVIITKSE 350
>gi|355683299|gb|AER97081.1| DEAD box polypeptide 47 [Mustela putorius furo]
Length = 454
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G FI+F S+ N+ +T R G H Q
Sbjct: 246 SKFKDTYLVYILNELAGNSFIIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 305
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 306 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 365
Query: 98 LPK 100
+ +
Sbjct: 366 VTQ 368
>gi|410626947|ref|ZP_11337693.1| ATP-dependent RNA helicase DeaD [Glaciecola mesophila KMM 241]
gi|410153326|dbj|GAC24462.1| ATP-dependent RNA helicase DeaD [Glaciecola mesophila KMM 241]
Length = 583
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 30/128 (23%)
Query: 51 KGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKD 101
+G + +LV +D + G+DVER +++ ++Y+HR G RAG+ G +
Sbjct: 294 RGKIDILVATDVVARGLDVERVSHVINYDVPYDTESYVHRIGRTGRAGRTGDAILFISHR 353
Query: 102 EDKLLYMFQVKRFKKLLQQADHDSCP-----------------VHSIPSSSIESLRPIYK 144
E ++L F ++R + Q D P + +I SSIE+L PI +
Sbjct: 354 EKRML--FSIERATR--QSIDPMPIPSISQLNETRLSRFKSSVIEAISDSSIETLIPIVE 409
Query: 145 SEYVESQA 152
S E++A
Sbjct: 410 SIQAETEA 417
>gi|388547858|ref|ZP_10151117.1| ATP-dependent RNA helicase [Pseudomonas sp. M47T1]
gi|388274016|gb|EIK93619.1| ATP-dependent RNA helicase [Pseudomonas sp. M47T1]
Length = 445
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ G +QVLV +D G+D++ + + Y+HR G RAG
Sbjct: 281 ATRQRALDRFKA-GEVQVLVATDVAARGLDIDDLPTVVNFDLPIVAEDYVHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE +LL +V + L +Q + P H +P ++
Sbjct: 340 LTGEAISLVCADEVQLLSAIEVLTRQTLKRQEESGFEPDHRVPETN 385
>gi|354616053|ref|ZP_09033745.1| DEAD/DEAH box helicase domain protein, partial [Saccharomonospora
paurometabolica YIM 90007]
gi|353219600|gb|EHB84147.1| DEAD/DEAH box helicase domain protein, partial [Saccharomonospora
paurometabolica YIM 90007]
Length = 471
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLV +D G+DVE ++ KTY+HR G RAG+ G
Sbjct: 294 QALRAFR-SGKIDVLVATDVAARGIDVEDVTHVVNYQTPDDQKTYVHRIGRTGRAGKTGV 352
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 353 ALTLVDWDE 361
>gi|330446057|ref|ZP_08309709.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328490248|dbj|GAA04206.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 426
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 24/108 (22%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L F+ G ++VLV +D G+D+E+ Y+ + Y+HR G RAG GH
Sbjct: 297 RALDEFK-SGKVRVLVATDVAARGLDIEQLGYVVNFDMPYKAEDYVHRIGRTGRAGMTGH 355
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRP 141
TL+ DE+ + +K ++LL IP +E P
Sbjct: 356 AITLMSLDEE-----WALKAIEELLDT---------RIPQQWLEGYEP 389
>gi|381188916|ref|ZP_09896474.1| ATP-dependent RNA helicase [Flavobacterium frigoris PS1]
gi|379649052|gb|EIA07629.1| ATP-dependent RNA helicase [Flavobacterium frigoris PS1]
Length = 445
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ ++ FR +GH+ +LV +D G+DV+ +Y+ + Y+HR+G ARAG NG
Sbjct: 284 RIMEQFR-EGHINILVATDLAARGIDVKEISYVVNYHLPDVYEAYVHRSGRTARAGANGL 342
Query: 94 CFTLLPKDE 102
T+L +E
Sbjct: 343 SLTVLQPEE 351
>gi|357384319|ref|YP_004899043.1| ATP-dependent RNA helicase RhlE [Pelagibacterium halotolerans B2]
gi|351592956|gb|AEQ51293.1| ATP-dependent RNA helicase RhlE [Pelagibacterium halotolerans B2]
Length = 473
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TLKAFR +G ++VLV +D G+D+ +++ + Y+HR G ARAG +G
Sbjct: 329 RTLKAFR-EGEIRVLVATDVAARGIDIPGVSHVYNYELPQVAENYVHRIGRTARAGADGE 387
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSS 134
L+ +E LL ++R L P+ PSS
Sbjct: 388 AVALVSGEEYGLL--LDIERLTGLSIATAGGERPLRKSPSS 426
>gi|348030292|ref|YP_004872978.1| ATP-dependent RNA helicase [Glaciecola nitratireducens FR1064]
gi|347947635|gb|AEP30985.1| ATP-dependent RNA helicase [Glaciecola nitratireducens FR1064]
Length = 584
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 24/126 (19%)
Query: 51 KGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKD 101
+G + +LV +D + G+DVER +++ ++Y+HR G RAG+ G +
Sbjct: 294 RGDIDILVATDVVARGLDVERVSHVINYDIPYDTESYVHRIGRTGRAGRTGDAILFISHR 353
Query: 102 EDKLLYMFQVKRFKKLLQQADHDSCP--------------VHSIPSSSIESLRPIYKSEY 147
E +LL+ + K K+ ++ + S + ++ SIES PI +S
Sbjct: 354 EKRLLFAIE-KATKQRIENMEIPSISQLNESRLVRFKQSIIEAMSDESIESYIPIVESIM 412
Query: 148 VESQAN 153
E++A+
Sbjct: 413 EETEAS 418
>gi|291447570|ref|ZP_06586960.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
gi|291350517|gb|EFE77421.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
Length = 458
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG G
Sbjct: 297 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVVNYQSPEDEKTYLHRIGRTGRAGAKGV 355
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 356 AITLVDWDD 364
>gi|258563612|ref|XP_002582551.1| ATP-dependent rRNA helicase RRP3 [Uncinocarpus reesii 1704]
gi|237908058|gb|EEP82459.1| ATP-dependent rRNA helicase RRP3 [Uncinocarpus reesii 1704]
Length = 472
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K IY + LL G+ IVF +V + + R G H Q
Sbjct: 271 KYKDIYFVYLLNEFPGQSVIVFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALG 330
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+LV +D G+D+ + KTYIHR G ARAG++GH F+L+
Sbjct: 331 KFRSRSRNILVATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGHAFSLV 390
Query: 99 PK 100
+
Sbjct: 391 TQ 392
>gi|406696286|gb|EKC99578.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
8904]
Length = 743
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 20/108 (18%)
Query: 26 LGGEKFIVFASSVANSP---KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYIKTY---- 78
+GG+K V + + P KT+ + G + VLVCSD ++ G+D+ A++ +Y
Sbjct: 609 IGGKKLSVASFTRDMKPSERKTMLSDFAVGKLDVLVCSDLISRGIDLPSVAHVVSYDVPL 668
Query: 79 -----IHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQA 121
+HRAG ARAG++G +T++ K E K FK +L A
Sbjct: 669 DMTKYVHRAGRTARAGRDGTVWTMVEKQE--------AKHFKDMLAAA 708
>gi|410623815|ref|ZP_11334625.1| ATP-dependent RNA helicase DeaD [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410156511|dbj|GAC29999.1| ATP-dependent RNA helicase DeaD [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 581
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 40/134 (29%)
Query: 51 KGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKD 101
+G + +LV +D + G+DVER +++ ++Y+HR G RAG+ G +
Sbjct: 294 RGDIDILVATDVVARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFISHR 353
Query: 102 EDKLLYMFQ----------------------VKRFKKLLQQADHDSCPVHSIPSSSIESL 139
E +LL+ + ++RFK+ + +A +D SIES
Sbjct: 354 EKRLLFAIEKATKQRIENMEIPSISQLNESRLERFKQSIIEAMND---------ESIESY 404
Query: 140 RPIYKSEYVESQAN 153
PI +S E++A+
Sbjct: 405 IPIVESIMEETEAS 418
>gi|393221493|gb|EJD06978.1| DEAD-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 496
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 18/88 (20%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAGQNGH 93
L+ F+ K + +LVCSD + G+D+ A+ I+ Y+HRAG ARAG+ G
Sbjct: 376 NVLEKFK-KQEIDILVCSDLVARGLDISHVAHVVSYDAPVDIRKYVHRAGRTARAGRAGD 434
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQA 121
+TL+ ED+ + K FK +L+ A
Sbjct: 435 AWTLV---EDQ-----EAKFFKDMLRDA 454
>gi|332293260|ref|YP_004431869.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
gi|332171346|gb|AEE20601.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
Length = 446
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 10/72 (13%)
Query: 48 FRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
FR +GH+ +LV +D G+DV+ Y+ Y+HR+G ARAG G+ T+L
Sbjct: 289 FR-EGHIDILVATDLAARGIDVKEIEYVVNYHLPEFYDMYVHRSGRTARAGATGYALTIL 347
Query: 99 PKDEDKLLYMFQ 110
++E K + F+
Sbjct: 348 QEEEVKEIPEFE 359
>gi|149917594|ref|ZP_01906091.1| putative ATP-dependent RNA helicase RhlE [Plesiocystis pacifica
SIR-1]
gi|149821657|gb|EDM81055.1| putative ATP-dependent RNA helicase RhlE [Plesiocystis pacifica
SIR-1]
Length = 437
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 14/101 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AF+G G ++VLV +D G+D+ + +++ +TYIHR G ARAG +G
Sbjct: 283 RALEAFKG-GELRVLVATDIAARGLDISKVSHVINFDLPNVPETYIHRIGRTARAGNSGI 341
Query: 94 CFTLLPKDEDKLLYMFQVKRFKK--LLQQADHDSCPVHSIP 132
+ D ++ Y+ ++R + + + DH P ++P
Sbjct: 342 ALSFC--DVEERAYLVDIERLLRAHIERIEDHGYPPSQALP 380
>gi|452825309|gb|EME32306.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 568
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 17/78 (21%)
Query: 54 MQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDEDK 104
+QV+V SD T GMD+E ++ KTY+HR G ARAG G T+L +
Sbjct: 399 LQVVVSSDVATRGMDIENIGHVISFDVPVHVKTYLHRVGRTARAGHKGTGCTILMEH--- 455
Query: 105 LLYMFQVKRFKKLLQQAD 122
Q F+KLL++ D
Sbjct: 456 -----QAHHFRKLLRKID 468
>gi|340622132|ref|YP_004740584.1| ATP-dependent RNA helicase deaD-like protein [Capnocytophaga
canimorsus Cc5]
gi|339902398|gb|AEK23477.1| ATP-dependent RNA helicase deaD-like protein [Capnocytophaga
canimorsus Cc5]
Length = 579
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 15/85 (17%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCF 95
+K+FR K +Q+LV +D G+DV+ ++ +TY HR+G RAG++G
Sbjct: 285 MKSFRAK-QIQMLVATDVAARGIDVDDITHVIHYQLPDEAETYTHRSGRTGRAGKSGVSM 343
Query: 96 TLLPKDEDKLLYMFQVKRFKKLLQQ 120
++PK E + ++K +K++QQ
Sbjct: 344 VIIPKSE-----VRKIKTIEKIIQQ 363
>gi|167385227|ref|XP_001737255.1| ATP-dependent RNA helicase DDX55 [Entamoeba dispar SAW760]
gi|165899983|gb|EDR26453.1| ATP-dependent RNA helicase DDX55, putative [Entamoeba dispar
SAW760]
Length = 499
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 40 NSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQ 90
N K +K F + +L+C+D + GMD YI KTYIHR G AR G
Sbjct: 296 NRDKVIKKFE-ESLEAILICTDILARGMDFNNINYIIQYDPPQDPKTYIHRVGRTARMGS 354
Query: 91 NGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHD 124
GH L E + + + K K + ++ + D
Sbjct: 355 IGHSLIFLSPLEKSFILLMEKKNVKIIEKKIERD 388
>gi|421073997|ref|ZP_15535042.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans JBW45]
gi|392528006|gb|EIW51087.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans JBW45]
Length = 385
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 23/127 (18%)
Query: 3 VNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSV-ANSPKTLKAFRGKGHMQVLVCSD 61
+N S I E+ K +Y L+ G + SSV + K+L+ FR KG +Q+LV SD
Sbjct: 250 INKSDDIEETTDKLVY--HGLKAAG-----IHGSSVKGDRKKSLEDFR-KGKVQLLVASD 301
Query: 62 AMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVK 112
G+D+ Y+ + Y+HR G RAG++G +++ K E L++
Sbjct: 302 VAARGLDIVGIDYVFNLDLPEDPQIYLHRVGRTGRAGESGIAISIITKQEVALIH----- 356
Query: 113 RFKKLLQ 119
+++KLL+
Sbjct: 357 KYEKLLK 363
>gi|225556564|gb|EEH04852.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus G186AR]
Length = 485
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K +YL+ LL G+ IVF +V + + R G H Q
Sbjct: 284 KYKDVYLVYLLNEYAGQSAIVFTRTVNETQRLAILLRALGFGSIPLHGQLSQSSRLGALS 343
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+LV +D G+D+ + KTYIHR G ARAG++GH F+++
Sbjct: 344 KFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIV 403
Query: 99 PK 100
+
Sbjct: 404 TQ 405
>gi|88858341|ref|ZP_01132983.1| putative ATP-dependent RNA helicase (rhlE-like); DEAD-box protein
family protein [Pseudoalteromonas tunicata D2]
gi|88819958|gb|EAR29771.1| putative ATP-dependent RNA helicase (rhlE-like); DEAD-box protein
family protein [Pseudoalteromonas tunicata D2]
Length = 413
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 10/87 (11%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ +G +VLV +D G+D+++ Y+ + YIHR G RAG+ G
Sbjct: 283 KALSEFK-EGKTRVLVATDVAARGIDIQQLQYVINYELPYIAEDYIHRIGRTGRAGEKGL 341
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQ 120
+LL DE+ LL + K+L QQ
Sbjct: 342 AISLLSIDENWLLEEIEAVLDKRLPQQ 368
>gi|347735337|ref|ZP_08868231.1| ATP-dependent RNA helicase RhlE [Azospirillum amazonense Y2]
gi|346921472|gb|EGY02178.1| ATP-dependent RNA helicase RhlE [Azospirillum amazonense Y2]
Length = 387
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 17/102 (16%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L FR G ++VLV +D G+DV+ ++ +TY+HR G ARAG +G
Sbjct: 287 KALDGFRA-GTVRVLVATDIAARGIDVDGVTHVVNFELPNEPETYVHRIGRTARAGASGV 345
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L D D+ +Y+ + +KL+++ S PV P ++
Sbjct: 346 AVSLCTADGDERIYL---RDIEKLIRK----SIPVGERPEAT 380
>gi|119494337|ref|XP_001264064.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181]
gi|119412226|gb|EAW22167.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181]
Length = 863
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 12/89 (13%)
Query: 19 LIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI--- 75
L P L N G I+ ++ + S KTL A+R +G + ++V +D + G+D+E ++
Sbjct: 712 LDPSLANHIG--TIIKSNKSSASRKTLTAYR-RGKISIIVATDRASRGLDLESLTHVVNY 768
Query: 76 ------KTYIHRAGPRARAGQNGHCFTLL 98
TY+HR G ARAG+ G +TL+
Sbjct: 769 DVPPSVTTYVHRVGRTARAGKEGSAWTLV 797
>gi|167536143|ref|XP_001749744.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771892|gb|EDQ85553.1| predicted protein [Monosiga brevicollis MX1]
Length = 2519
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 38/128 (29%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFAS------------------SVAN---------SP 42
C + +P+ L+ LL ++ ++F S SVA +
Sbjct: 432 CTATERPLVLLSLLIGFQMQRVLIFVSALNTAKRVTALLQYFDELSVAEVSSSQSQQENT 491
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGH 93
+ LK F G + VLVCSD M G+D++ A+ KTYIHR G RAG +G
Sbjct: 492 RALKQF-AAGELSVLVCSDNMARGIDIKNVETVISYDAPAFPKTYIHRVGRVGRAGAHGE 550
Query: 94 CFTL-LPK 100
+TL LP+
Sbjct: 551 AYTLVLPQ 558
>gi|403738909|ref|ZP_10951510.1| putative DEAD-box RNA helicase [Austwickia chelonae NBRC 105200]
gi|403191559|dbj|GAB78280.1| putative DEAD-box RNA helicase [Austwickia chelonae NBRC 105200]
Length = 513
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ ++AFR KG + VLV +D G+DVE ++ KTY+HR G RAGQ G
Sbjct: 324 QAMRAFR-KGKVDVLVATDVAARGIDVENVTHVVNYQCPEDEKTYLHRTGRTGRAGQTGI 382
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 383 AITLVDWDD 391
>gi|395499060|ref|ZP_10430639.1| putative ATP-dependent RNA helicase [Pseudomonas sp. PAMC 25886]
Length = 443
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 54 MQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDEDK 104
+Q+LV +D G+D+E + + YIHR G RAG G +L+ DE
Sbjct: 295 VQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVN 354
Query: 105 LLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L ++ + L ++ + D P H +P +
Sbjct: 355 MLSAIEMLTRQTLTRKMEQDFEPEHRVPDTD 385
>gi|359149177|ref|ZP_09182241.1| ATP-dependent RNA helicase [Streptomyces sp. S4]
Length = 570
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 15/123 (12%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG+ G
Sbjct: 209 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQTPEDEKTYLHRIGRTGRAGRTGI 267
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQAN 153
TL+ D+ + + + K L+ +D +S E LR ++ +A+
Sbjct: 268 AITLVDWDD-----IPRWQLINKALELTFNDPVETYSTSPHLYEELRIPEGTKGTLPRAD 322
Query: 154 RKR 156
R R
Sbjct: 323 RTR 325
>gi|226288804|gb|EEH44316.1| ATP-dependent rRNA helicase RRP3 [Paracoccidioides brasiliensis
Pb18]
Length = 482
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K IYL+ LL G+ I+F +V + + R G H Q
Sbjct: 281 KYKDIYLVYLLNEFAGQSAIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSYRLGALG 340
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+LV +D G+D+ + KTYIHR G ARAG++GH F+ +
Sbjct: 341 KFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFSFV 400
Query: 99 PK 100
+
Sbjct: 401 TQ 402
>gi|170583206|ref|XP_001896476.1| ATP-dependent RNA helicase T26G10.1 in chromosome III [Brugia
malayi]
gi|158596304|gb|EDP34674.1| ATP-dependent RNA helicase T26G10.1 in chromosome III, putative
[Brugia malayi]
Length = 462
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K YLI +L + G+ IVF S+ A++ KT R G H Q
Sbjct: 248 KYKEAYLIYILNEMAGQTAIVFCSTCASALKTALMLRKLGFGAVPLHGQMSQAKRLGSLN 307
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
VLVC+D + G+D+ + K Y+HR G ARAG++G T +
Sbjct: 308 KFKSKASTVLVCTDVASRGLDIPHVDIVLNYDVPTQSKDYVHRVGRTARAGRSGVAITFV 367
Query: 99 PK 100
+
Sbjct: 368 TQ 369
>gi|254480404|ref|ZP_05093651.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
gi|214038987|gb|EEB79647.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
Length = 429
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 10/73 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ +G ++VLV +D G+D+++ ++ + Y+HR G ARAGQ GH
Sbjct: 285 KALANFK-QGSVRVLVATDIAARGIDIDKLPHVVNFELPNVAEDYVHRIGRTARAGQEGH 343
Query: 94 CFTLLPKDEDKLL 106
+L+ DE KLL
Sbjct: 344 AVSLVCVDELKLL 356
>gi|70732712|ref|YP_262475.1| ATP-dependent RNA helicase [Pseudomonas protegens Pf-5]
gi|68347011|gb|AAY94617.1| putative ATP-dependent RNA helicase [Pseudomonas protegens Pf-5]
Length = 444
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +Q+LV +D G+D+E + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKAS-EIQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE LL ++ + L + + D P H +P +
Sbjct: 340 STGEAISLVCADEVNLLSAIEMLTRQTLKRHEEQDFEPEHRVPETD 385
>gi|17136666|ref|NP_476833.1| dead box protein 73D [Drosophila melanogaster]
gi|12644178|sp|P26802.3|DDX51_DROME RecName: Full=Probable ATP-dependent RNA helicase Dbp73D;
Short=DEAD box protein 73D
gi|4972732|gb|AAD34761.1| unknown [Drosophila melanogaster]
gi|7294064|gb|AAF49419.1| dead box protein 73D [Drosophila melanogaster]
gi|33589494|gb|AAQ22514.1| LD27814p [Drosophila melanogaster]
Length = 687
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 55/205 (26%), Positives = 84/205 (40%), Gaps = 55/205 (26%)
Query: 5 LSPQIC--ESKLKPIYLIPLLRNLGGEKFIVFASSVANSPK---TLKAFRGK-------- 51
L+ Q C E +LKP+ + L+ ++F+ F +S + + LK K
Sbjct: 419 LTEQYCVTELRLKPLTVFALVEKYKWKRFLCFTNSSDQATRLTFVLKVLFQKYSTKVSEL 478
Query: 52 ------------------GHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGP 84
G + L+CSDA+ G+DV E +I TYIHR G
Sbjct: 479 SGNLSAKVRNERLRDFAAGKINGLICSDALARGIDVADVDVVLSYETPRHITTYIHRVGR 538
Query: 85 RARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHD-SCPVHSIPSSSIESLRPIY 143
ARAG+ G T+L + + L FKK+L A+ +H P I+ +
Sbjct: 539 TARAGRKGTAVTVLTEQDMTL--------FKKILSDANKGLGEEIHVSPDIEIQ-----H 585
Query: 144 KSEYVESQAN-RKRKIGFKLSRMVK 167
EY E+ A R K+ K +M +
Sbjct: 586 AVEYKEALAGLRSEKVKNKNQKMAE 610
>gi|406662625|ref|ZP_11070716.1| ATP-dependent RNA helicase rhlE [Cecembia lonarensis LW9]
gi|405553393|gb|EKB48651.1| ATP-dependent RNA helicase rhlE [Cecembia lonarensis LW9]
Length = 377
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 11/93 (11%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ LK F+ G ++VLV +D G+D+E Y+ K YIHR G RAG G
Sbjct: 285 EALKQFKA-GKLRVLVATDLAARGIDIEALPYVVNYELPRSPKDYIHRIGRTGRAGVEGE 343
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSC 126
+L+ +++ + Q K+ K+ ++ D D+
Sbjct: 344 AISLITEEDSHHWKVIQ-KKMKRWVELVDSDNL 375
>gi|395797811|ref|ZP_10477099.1| putative ATP-dependent RNA helicase [Pseudomonas sp. Ag1]
gi|421141916|ref|ZP_15601895.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens
BBc6R8]
gi|395338179|gb|EJF70032.1| putative ATP-dependent RNA helicase [Pseudomonas sp. Ag1]
gi|404506936|gb|EKA20927.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens
BBc6R8]
Length = 445
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 54 MQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDEDK 104
+Q+LV +D G+D+E + + YIHR G RAG G +L+ DE
Sbjct: 295 VQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVN 354
Query: 105 LLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L ++ + L ++ + D P H +P +
Sbjct: 355 MLSAIEMLTRQTLTRKMEQDFEPEHRVPDTD 385
>gi|358060304|dbj|GAA94058.1| hypothetical protein E5Q_00705 [Mixia osmundae IAM 14324]
Length = 447
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 67/163 (41%), Gaps = 37/163 (22%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSV--------------------------ANSPKTLK 46
K K YL+ L L G+ IVF +V +N L
Sbjct: 236 KHKETYLVYLCNELAGKSIIVFVRTVHDAQRLSLILRTLGFPAVPLHGQLTQSNRLGALN 295
Query: 47 AFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
F+ G Q+LV +D + G+D+ Y+ K YIHR G ARAG++G TL
Sbjct: 296 KFKSGGR-QILVATDVASRGLDIPMVDYVVNYDIPTHSKDYIHRVGRTARAGRSGKSITL 354
Query: 98 LPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLR 140
+ + + +LL + KK+ + A HD V + E+ R
Sbjct: 355 VTQYDVELLQRIEGVVGKKMSEFA-HDKEAVLVLSERVTEAAR 396
>gi|109898452|ref|YP_661707.1| DEAD/DEAH box helicase [Pseudoalteromonas atlantica T6c]
gi|109700733|gb|ABG40653.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
T6c]
Length = 435
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 15/111 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G ++ LV +D G+D+ + + + Y+HR G RAG +G
Sbjct: 284 KALAEFK-SGKVRALVATDIAARGLDISQLPQVVNYDLPNVAEDYVHRIGRTGRAGASGQ 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLL--QQADHDSCPVHSIPSSSIESLRPI 142
+L+ DE LL ++RF K + ++ PVH++P S ++S RPI
Sbjct: 343 AISLVTADEFSLLA--DIERFTKQIIPRKGIEGFEPVHALPESRLDS-RPI 390
>gi|298709167|emb|CBJ31111.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 839
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 18/110 (16%)
Query: 34 FASSVANSPKTLKAFRGK-GHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAG 83
F+SS+ ++ R + G ++V+VCSD M GMD++ + KTY+HR G
Sbjct: 694 FSSSLGQRQRSSIIRRARAGAVRVIVCSDGMARGMDLDGVGLVVNYDVPSQAKTYVHRVG 753
Query: 84 PRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPS 133
ARAG G T+ K QVK+F + D + S P+
Sbjct: 754 RTARAGSRGTAVTITKKG--------QVKQFLNMRSGIDKKRVRLDSSPA 795
>gi|421168284|ref|ZP_15626380.1| ATP-dependent RNA helicase, partial [Pseudomonas aeruginosa ATCC
700888]
gi|404530607|gb|EKA40598.1| ATP-dependent RNA helicase, partial [Pseudomonas aeruginosa ATCC
700888]
Length = 318
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+ F+ G + +LV +D G+D+E + + Y+HR G RAG +G
Sbjct: 154 RALQRFKA-GEVDLLVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQ 212
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L+ DE +LL + + L ++ + D P H +P ++
Sbjct: 213 AVSLVCADEVELLAAIETLIGQTLQRREEPDFAPEHRVPQTA 254
>gi|260428461|ref|ZP_05782440.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
gi|260422953|gb|EEX16204.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
Length = 430
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 12/84 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ +KAFR G + VLV +D G+D+ AY+ Y+HR G ARAG+ G
Sbjct: 286 RAIKAFR-DGDINVLVATDVAARGIDIPGVAYVVNYDLPEVPDNYVHRIGRTARAGREGE 344
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKL 117
DE LL Q++R K+
Sbjct: 345 AIAFCAPDEADLLR--QIQRLMKI 366
>gi|451987161|ref|ZP_21935321.1| ATP-dependent RNA helicase PA3950 [Pseudomonas aeruginosa 18A]
gi|451755216|emb|CCQ87844.1| ATP-dependent RNA helicase PA3950 [Pseudomonas aeruginosa 18A]
Length = 449
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+ F+ G + +LV +D G+D+E + + Y+HR G RAG +G
Sbjct: 285 RALQRFKA-GEVDLLVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQ 343
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L+ DE +LL + + L ++ + D P H +P ++
Sbjct: 344 AVSLVCADEVELLAAIETLIGQTLQRREEPDFAPEHRVPQTA 385
>gi|410618667|ref|ZP_11329603.1| ATP-dependent RNA helicase DeaD [Glaciecola polaris LMG 21857]
gi|410161755|dbj|GAC33741.1| ATP-dependent RNA helicase DeaD [Glaciecola polaris LMG 21857]
Length = 540
Score = 50.1 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 30/129 (23%)
Query: 51 KGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKD 101
+G + +LV +D + G+DVER +++ ++Y+HR G RAG+ G +
Sbjct: 253 RGKIDILVATDVVARGLDVERVSHVINYDVPYDTESYVHRIGRTGRAGRTGDAILFISHR 312
Query: 102 EDKLLYMFQVKRFKKLLQQADHDSCP-----------------VHSIPSSSIESLRPIYK 144
E ++L F ++R + Q D P + +I SSIE+L PI +
Sbjct: 313 EKRML--FSIERATR--QSIDPMPIPSISQLNETRLSRFKNSVIEAISDSSIETLIPIVE 368
Query: 145 SEYVESQAN 153
S E++A+
Sbjct: 369 SIQKETEAS 377
>gi|367474852|ref|ZP_09474344.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. ORS 285]
gi|365272847|emb|CCD86812.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. ORS 285]
Length = 469
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 11/84 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL AFR G ++ LV +D G+DV+ +++ +TY+HR G ARAG G
Sbjct: 286 RTLAAFR-TGEIRTLVATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIGRTARAGAEGV 344
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKL 117
+L+ D+L Y+ ++R K+
Sbjct: 345 AISLV-AGADELSYLRDIERLTKV 367
>gi|312963192|ref|ZP_07777677.1| ATP-dependent RNA helicase [Pseudomonas fluorescens WH6]
gi|311282703|gb|EFQ61299.1| ATP-dependent RNA helicase [Pseudomonas fluorescens WH6]
Length = 444
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +Q+LV +D G+D+E + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKAS-EVQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE +L ++ + L + + D P H +P +
Sbjct: 340 NTGEAISLVCADEVNMLSAIEMLTRQTLTRNMEQDFEPEHRVPDTD 385
>gi|341883149|gb|EGT39084.1| hypothetical protein CAEBREN_00981 [Caenorhabditis brenneri]
Length = 450
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 9/65 (13%)
Query: 51 KGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAGQNGHCFTLLPKD 101
KG + VLV +D + G+D+E IK YIHR G ARAG+ G +L+ ++
Sbjct: 153 KGEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEE 212
Query: 102 EDKLL 106
E KLL
Sbjct: 213 ERKLL 217
>gi|325087574|gb|EGC40884.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus H88]
Length = 485
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 36/123 (29%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPK--------------------------TLK 46
K K +YL+ LL G+ IVF +V + + L
Sbjct: 284 KYKDVYLVYLLNEYAGQSAIVFTRTVNETQRLAILLRTLGFGSIPLHGQLSQSSRLGALS 343
Query: 47 AFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
FR + +LV +D G+D+ + KTYIHR G ARAG++GH F++
Sbjct: 344 KFRSRSR-DILVATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSI 402
Query: 98 LPK 100
+ +
Sbjct: 403 VTQ 405
>gi|307178385|gb|EFN67130.1| Probable ATP-dependent RNA helicase DDX47 [Camponotus floridanus]
Length = 435
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 36/123 (29%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKT--------------------------LK 46
K K +YL+ +L L G F++F + N+ +T L
Sbjct: 226 KFKDVYLVHILNELAGNNFMIFCGTCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALT 285
Query: 47 AFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
FR K +L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 286 KFRAKNR-SILISTDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITF 344
Query: 98 LPK 100
+ +
Sbjct: 345 ITQ 347
>gi|85819086|gb|EAQ40245.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
Length = 428
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 10/64 (15%)
Query: 48 FRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
FR +GH+ +LV +D G+DV+ +Y+ Y+HR G ARAG+ G+ T+L
Sbjct: 289 FR-EGHIDILVATDLAARGIDVKEISYVVNYHLPEFYDMYVHRTGRTARAGKTGYALTVL 347
Query: 99 PKDE 102
++E
Sbjct: 348 QQEE 351
>gi|332232745|ref|XP_003265564.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Nomascus
leucogenys]
Length = 455
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 34/140 (24%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 247 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 306
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 307 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 366
Query: 98 LPKDEDKLLYMFQVKRFKKL 117
+ + + +L + KKL
Sbjct: 367 VTQYDVELFQRIEYLIGKKL 386
>gi|87302363|ref|ZP_01085188.1| Superfamily II DNA and RNA helicase [Synechococcus sp. WH 5701]
gi|87283288|gb|EAQ75244.1| Superfamily II DNA and RNA helicase [Synechococcus sp. WH 5701]
Length = 427
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L +F+ G ++VLV +D G+D+E+ ++ + Y+HR G RAGQ+GH
Sbjct: 277 RALASFK-SGELRVLVATDLAARGLDIEQLPHVVNLDLPNVAEDYVHRIGRTGRAGQSGH 335
Query: 94 CFTLLPKDEDKLLYMFQ 110
+L+ +E +LL +
Sbjct: 336 ALSLVAAEEHELLRAIE 352
>gi|116051990|ref|YP_789167.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
gi|355639459|ref|ZP_09051174.1| hypothetical protein HMPREF1030_00260 [Pseudomonas sp. 2_1_26]
gi|392982323|ref|YP_006480910.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa DK2]
gi|419756955|ref|ZP_14283300.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PADK2_CF510]
gi|421172786|ref|ZP_15630547.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa CI27]
gi|115587211|gb|ABJ13226.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|354831879|gb|EHF15883.1| hypothetical protein HMPREF1030_00260 [Pseudomonas sp. 2_1_26]
gi|384396710|gb|EIE43128.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PADK2_CF510]
gi|392317828|gb|AFM63208.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa DK2]
gi|404537189|gb|EKA46803.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa CI27]
Length = 449
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+ F+ G + +LV +D G+D+E + + Y+HR G RAG +G
Sbjct: 285 RALQRFKA-GEVDLLVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQ 343
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L+ DE +LL + + L ++ + D P H +P ++
Sbjct: 344 AVSLVCADEVELLAAIETLIGQTLQRREEPDFAPEHRVPQTA 385
>gi|318062100|ref|ZP_07980821.1| putative ATP-dependent RNA helicase [Streptomyces sp. SA3_actG]
Length = 527
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG++G
Sbjct: 256 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQTPEDEKTYLHRIGRTGRAGRSGT 314
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 315 AVTLVDWDD 323
>gi|313109386|ref|ZP_07795348.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
gi|386068049|ref|YP_005983353.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa NCGM2.S1]
gi|310881850|gb|EFQ40444.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
gi|348036608|dbj|BAK91968.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa NCGM2.S1]
Length = 449
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+ F+ G + +LV +D G+D+E + + Y+HR G RAG +G
Sbjct: 285 RALQRFKA-GEVDLLVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQ 343
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L+ DE +LL + + L ++ + D P H +P ++
Sbjct: 344 AVSLVCADEVELLAAIETLIGQTLQRREEPDFAPEHRVPQTA 385
>gi|289675849|ref|ZP_06496739.1| ATP-dependent RNA helicase rhlE, putative, partial [Pseudomonas
syringae pv. syringae FF5]
Length = 159
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 53 HMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDED 103
+++LV +D G+D++ + + YIHR G RAG G +L+ DE
Sbjct: 11 EVKILVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEV 70
Query: 104 KLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+LL +V + L ++ + D P H +PS+
Sbjct: 71 ELLSAIEVLTRQTLERKEEQDFEPEHRVPSTD 102
>gi|320038649|gb|EFW20584.1| ATP-dependent rRNA helicase RRP3 [Coccidioides posadasii str.
Silveira]
Length = 474
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 51/126 (40%), Gaps = 34/126 (26%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ------- 55
I K K IYLI LL G+ IVF +V + + R G H Q
Sbjct: 269 IIPHKHKDIYLIYLLNEFPGQSVIVFTRTVNETQRLANLLRALGFGAIPLHGQLSQSARL 328
Query: 56 ------------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
+LV +D G+D+ + KTYIHR G ARAG++G
Sbjct: 329 GALGKFRSRSRNILVATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRA 388
Query: 95 FTLLPK 100
F+L+ +
Sbjct: 389 FSLVTQ 394
>gi|74143864|dbj|BAE41247.1| unnamed protein product [Mus musculus]
Length = 323
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 115 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 174
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 175 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 234
Query: 98 LPK 100
+ +
Sbjct: 235 VTQ 237
>gi|399009866|ref|ZP_10712274.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM17]
gi|398109615|gb|EJL99537.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM17]
Length = 444
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +Q+LV +D G+D+E + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKAS-EIQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE LL ++ + L + + D P H +P +
Sbjct: 340 STGEAISLVCADEVNLLSAIEMLTRQTLKRHDEPDFIPEHRVPETD 385
>gi|365960419|ref|YP_004941986.1| DEAD/DEAH box helicase domain-containing protein [Flavobacterium
columnare ATCC 49512]
gi|365737100|gb|AEW86193.1| DEAD/DEAH box helicase domain-containing protein [Flavobacterium
columnare ATCC 49512]
Length = 605
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 12/89 (13%)
Query: 37 SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRAR 87
S A +KAFRG+ +Q+LV +D G+DV+ + I+TY HR+G R
Sbjct: 277 SQAQRDAVMKAFRGR-QIQMLVATDVAARGIDVDDVTHVINYQLPDEIETYTHRSGRTGR 335
Query: 88 AGQNGHCFTLLPKDEDKLLYMFQVKRFKK 116
AG++G ++ K E L + Q++R K
Sbjct: 336 AGKSGTSMVIITKSE--LRKISQIERIIK 362
>gi|332306494|ref|YP_004434345.1| DEAD/DEAH box helicase domain protein [Glaciecola sp. 4H-3-7+YE-5]
gi|332173823|gb|AEE23077.1| DEAD/DEAH box helicase domain protein [Glaciecola sp. 4H-3-7+YE-5]
Length = 436
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G ++ LV +D G+D+ + + + Y+HR G RAG +G
Sbjct: 284 KALAEFK-SGKVRALVATDIAARGLDISQLPQVVNYDLPNVAEDYVHRIGRTGRAGASGQ 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLL--QQADHDSCPVHSIPSSSIESLRPI 142
+L+ DE LL ++RF K + ++ PVH +P S +++ RPI
Sbjct: 343 AISLVTADEFSLLA--DIERFTKQIIPRKGIEGFAPVHDLPESRLDN-RPI 390
>gi|218674642|ref|ZP_03524311.1| DEAD/DEAH box helicase domain protein [Rhizobium etli GR56]
Length = 420
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 18/109 (16%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCF 95
L++FR G++Q+LV SD G+D+ +++ + Y+HR G RAG++G F
Sbjct: 289 LQSFR-DGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAF 347
Query: 96 TLLPKDEDKLLYMFQVKRFKKLL-QQADHDSCPVHSIP--SSSIESLRP 141
TL+ K + K V +KL+ ++ + S V+S+P S ++ RP
Sbjct: 348 TLVTKRDTKF-----VDAIEKLIGEKVEWLSGDVNSLPPAEESADNERP 391
>gi|408479143|ref|ZP_11185362.1| ATP-dependent RNA helicase [Pseudomonas sp. R81]
Length = 444
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 53 HMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDED 103
+Q+LV +D G+D+E + + YIHR G RAG G +L+ DE
Sbjct: 294 EVQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEV 353
Query: 104 KLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L ++ + L + + D P H +P +
Sbjct: 354 NMLSAIEMLTRQTLTRHMEQDFEPEHRVPDTD 385
>gi|388578792|gb|EIM19128.1| DEAD-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 438
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 75/180 (41%), Gaps = 39/180 (21%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPK--------------------------TLK 46
K+K YL+ L + G I+F +V ++ + L
Sbjct: 228 KMKDSYLVYLANEVAGHSMIIFTRTVVDAQRISIILRNLGFPAIPLHGQLSQSSRLGALN 287
Query: 47 AFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
F+ G +LV +D + G+D+ Y+ K YIHR G ARAG++G TL
Sbjct: 288 KFKAGGR-NILVATDVASRGLDIPSVDYVVNYDTPSNSKDYIHRVGRTARAGRSGKAITL 346
Query: 98 LPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQANRKRK 157
+ + + +LL + K +++ HD V + E+ R I E ESQ +KRK
Sbjct: 347 VTQYDVELLQRIE-KAINVKMEEFPHDKQAVPLLVERVNEASR-IAAVELRESQ-QKKRK 403
>gi|333024583|ref|ZP_08452647.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
gi|332744435|gb|EGJ74876.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
Length = 527
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG++G
Sbjct: 256 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQTPEDEKTYLHRIGRTGRAGRSGT 314
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 315 AVTLVDWDD 323
>gi|398980078|ref|ZP_10688813.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM25]
gi|398135037|gb|EJM24167.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM25]
Length = 446
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 53 HMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDED 103
+Q+LV +D G+D+E + + YIHR G RAG G +L+ DE
Sbjct: 294 EVQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCADEV 353
Query: 104 KLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L ++ L ++ + D P H +P +
Sbjct: 354 NMLSAIEMLTRSTLKREVEPDFVPEHRVPDTD 385
>gi|425901734|ref|ZP_18878325.1| putative ATP-dependent RNA helicase [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
gi|397892868|gb|EJL09344.1| putative ATP-dependent RNA helicase [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
Length = 444
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +Q+LV +D G+D+E + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKAS-EIQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE LL ++ + L + + D P H +P +
Sbjct: 340 STGEAISLVCADEVNLLSAIEMLTRQTLKRHDEPDFIPEHRVPETD 385
>gi|410641166|ref|ZP_11351689.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola chathamensis
S18K6]
gi|410139293|dbj|GAC09876.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola chathamensis
S18K6]
Length = 436
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G ++ LV +D G+D+ + + + Y+HR G RAG +G
Sbjct: 284 KALAEFK-SGKVRALVATDIAARGLDISQLPQVVNYDLPNVAEDYVHRIGRTGRAGASGQ 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLL--QQADHDSCPVHSIPSSSIESLRPI 142
+L+ DE LL ++RF K + ++ PVH +P S +++ RPI
Sbjct: 343 AISLVTADEFSLLA--DIERFTKQIIPRKGIEGFAPVHDLPESRLDN-RPI 390
>gi|402494079|ref|ZP_10840825.1| DEAD/DEAH box helicase domain protein [Aquimarina agarilytica ZC1]
Length = 429
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 10/60 (16%)
Query: 48 FRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
FR +GH+ +LV +D G+DV+ +Y+ +TY+HR+G ARAG G+ T+L
Sbjct: 289 FR-EGHIDILVATDVAARGLDVKEISYVVNYHLPDAYETYVHRSGRTARAGLKGYALTVL 347
>gi|398986786|ref|ZP_10691704.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM24]
gi|399011731|ref|ZP_10714061.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM16]
gi|398117315|gb|EJM07067.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM16]
gi|398151662|gb|EJM40204.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM24]
Length = 445
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 53 HMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDED 103
+Q+LV +D G+D+E + + YIHR G RAG G +L+ DE
Sbjct: 294 EVQILVATDVAARGLDIEDLPLVINFDLPIVAEDYIHRIGRTGRAGATGEAISLVCADEV 353
Query: 104 KLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L ++ + L +Q + D P H +P +
Sbjct: 354 NMLSAIEMLTRQTLKRQNEPDFEPEHRVPDTD 385
>gi|87121447|ref|ZP_01077336.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
sp. MED121]
gi|86163290|gb|EAQ64566.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
sp. MED121]
Length = 418
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 15/85 (17%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L AF+ G ++ LV +D G+D+E +Y+ + YIHR G RAGQ+G
Sbjct: 288 RVLAAFKA-GELRALVATDVAARGLDIEALSYVINHELPYNAEDYIHRIGRTGRAGQSGL 346
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLL 118
+LL + E+ LL K +KLL
Sbjct: 347 AVSLLSEKENYLL-----KDIEKLL 366
>gi|398852711|ref|ZP_10609359.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM80]
gi|398243285|gb|EJN28876.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM80]
Length = 445
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 53 HMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDED 103
+Q+LV +D G+D+E + + YIHR G RAG G +L+ DE
Sbjct: 294 EVQILVATDVAARGLDIEDLPLVINFDLPIVAEDYIHRIGRTGRAGATGEAISLVCADEV 353
Query: 104 KLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L ++ + L +Q + D P H +P +
Sbjct: 354 NMLSAIEMLTRQTLKRQNEPDFEPEHRVPDTD 385
>gi|402590562|gb|EJW84492.1| DEAD box ATP-dependent RNA helicase [Wuchereria bancrofti]
Length = 462
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K YLI +L + G+ IVF S+ A++ KT R G H Q
Sbjct: 248 KYKEAYLIYILNEMAGQTAIVFCSTCASALKTALMLRKLGFGAVPLHGQMSQAKRLGSLN 307
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
VLVC+D + G+D+ + K Y+HR G ARAG++G T +
Sbjct: 308 KFKSKASTVLVCTDVASRGLDIPHVDIVLNYDVPTQSKDYVHRVGRTARAGRSGVAVTFV 367
Query: 99 PK 100
+
Sbjct: 368 TQ 369
>gi|398845416|ref|ZP_10602451.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM84]
gi|398253579|gb|EJN38701.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM84]
Length = 439
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L +F+ + +QVLV +D G+D++ + + Y+HR G RAG
Sbjct: 281 ATRQRALDSFKAR-EIQVLVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE +LL + + L + + D P H +P +
Sbjct: 340 NKGEAISLVCADEVQLLASIETLTRQTLPRHEEPDFIPDHRVPMTD 385
>gi|395647109|ref|ZP_10434959.1| putative ATP-dependent RNA helicase [Pseudomonas extremaustralis
14-3 substr. 14-3b]
Length = 444
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 54 MQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDEDK 104
+Q+L+ +D G+D+E + + YIHR G RAG G +L+ DE
Sbjct: 295 VQILIATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVN 354
Query: 105 LLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L ++ + L+++ + D P H +P +
Sbjct: 355 MLSAIEMLTRQTLIRKMEADFEPEHRVPDTD 385
>gi|410627645|ref|ZP_11338382.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola mesophila KMM
241]
gi|410152719|dbj|GAC25151.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola mesophila KMM
241]
Length = 435
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 15/111 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G ++ LV +D G+D+ + + + Y+HR G RAG +G
Sbjct: 284 KALAEFK-SGKVRALVATDIAARGLDISQLPQVVNYDLPNVAEDYVHRIGRTGRAGASGQ 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLL--QQADHDSCPVHSIPSSSIESLRPI 142
+L+ DE LL ++RF K + ++ PVH++P S ++S RPI
Sbjct: 343 AISLVTADEFPLLA--DIERFTKQIIPRKGIEGFEPVHALPESRLDS-RPI 390
>gi|424925048|ref|ZP_18348409.1| Superfamily II DNA and RNA helicase [Pseudomonas fluorescens R124]
gi|404306208|gb|EJZ60170.1| Superfamily II DNA and RNA helicase [Pseudomonas fluorescens R124]
Length = 446
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 53 HMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDED 103
+Q+LV +D G+D+E + + YIHR G RAG G +L+ DE
Sbjct: 294 EVQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGATGEAISLVCADEV 353
Query: 104 KLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L ++ + L +Q + D P H +P +
Sbjct: 354 NMLSAIEMLTRQTLKRQNEPDFEPEHRVPDTD 385
>gi|341897829|gb|EGT53764.1| hypothetical protein CAEBREN_24102 [Caenorhabditis brenneri]
Length = 485
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAGQNGH 93
++L F+ KG + VLV +D + G+D+E IK YIHR G ARAG+ G
Sbjct: 181 ESLSKFK-KGEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGR 239
Query: 94 CFTLLPKDEDKLL 106
+L+ ++E KLL
Sbjct: 240 SISLVGEEERKLL 252
>gi|256825728|ref|YP_003149688.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547]
gi|256689121|gb|ACV06923.1| DNA/RNA helicase, superfamily II [Kytococcus sedentarius DSM 20547]
Length = 499
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLV +D G+DVE ++ KTY+HR G RAG+NG
Sbjct: 297 QALRAFR-TGKVDVLVATDVAARGIDVEDVTHVVNYQCPEDEKTYLHRIGRTGRAGKNGV 355
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 356 AVTLVDWDD 364
>gi|383854018|ref|XP_003702519.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Megachile rotundata]
Length = 453
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K +YL+ +L L G F++F ++ N+ +T R G H Q
Sbjct: 242 KFKDVYLVHILNELAGNSFMIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALT 301
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+L+ +D + G+D+ + K YIHR G ARAG++G T +
Sbjct: 302 KFKAKNRSILISTDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFV 361
Query: 99 PK 100
+
Sbjct: 362 TQ 363
>gi|340719056|ref|XP_003397973.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Bombus
terrestris]
Length = 458
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K +YL+ +L L G F++F ++ N+ +T R G H Q
Sbjct: 247 KFKDVYLVHILNELAGNSFMIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALT 306
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+L+ +D + G+D+ + K YIHR G ARAG++G T +
Sbjct: 307 KFKAKNRSILISTDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFV 366
Query: 99 PK 100
+
Sbjct: 367 TQ 368
>gi|281349896|gb|EFB25480.1| hypothetical protein PANDA_006406 [Ailuropoda melanoleuca]
Length = 383
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 34/129 (26%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 218 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 277
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 278 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 337
Query: 98 LPKDEDKLL 106
+ + + +L
Sbjct: 338 VTQYDVELF 346
>gi|225681661|gb|EEH19945.1| ATP-dependent rRNA helicase rrp3 [Paracoccidioides brasiliensis
Pb03]
Length = 469
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K IYL+ LL G+ I+F +V + + R G H Q
Sbjct: 268 KYKDIYLVYLLNEFAGQSAIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSYRLGALG 327
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+LV +D G+D+ + KTYIHR G ARAG++GH F+ +
Sbjct: 328 KFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFSFV 387
Query: 99 PK 100
+
Sbjct: 388 TQ 389
>gi|410901863|ref|XP_003964414.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Takifugu
rubripes]
Length = 471
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 34/140 (24%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L +L G FI+F S+ N+ + R G H Q
Sbjct: 261 SKYKDCYLVSILNDLAGNSFIIFCSTCNNAQRVALLLRNLGITAISLHGQMSQNKRLGAL 320
Query: 56 ---------VLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGHCFTL 97
VL+ +D + G+D+ + + K YIHR G ARAG++G T
Sbjct: 321 NKFKSKSRSVLLATDVASRGLDIPHVDCVINYDIPTHSKDYIHRVGRTARAGRSGKSITF 380
Query: 98 LPKDEDKLLYMFQVKRFKKL 117
+ + + +L + KKL
Sbjct: 381 VTQYDVELFQRIESLIGKKL 400
>gi|60649461|gb|AAH91696.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Rattus norvegicus]
Length = 323
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 115 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 174
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 175 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 234
Query: 98 LPK 100
+ +
Sbjct: 235 VTQ 237
>gi|219122463|ref|XP_002181564.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406840|gb|EEC46778.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 453
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 9/54 (16%)
Query: 54 MQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+ V+VCSD M+ GMD++ + KTY+HR G ARAG+ GH +LL
Sbjct: 389 VSVVVCSDGMSRGMDIDAVRAVINYDVPGLAKTYVHRCGRTARAGKEGHAISLL 442
>gi|426225486|ref|XP_004006897.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Ovis aries]
Length = 457
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 249 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 308
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 309 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 368
Query: 98 LPK 100
+ +
Sbjct: 369 VTQ 371
>gi|440910729|gb|ELR60491.1| Putative ATP-dependent RNA helicase DDX47 [Bos grunniens mutus]
Length = 457
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 249 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 308
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 309 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 368
Query: 98 LPK 100
+ +
Sbjct: 369 VTQ 371
>gi|329912990|ref|ZP_08275858.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
gi|327545464|gb|EGF30669.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
Length = 410
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 42 PKTLKAFRG--KGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQ 90
P L+A G +Q+LV +D G+D++ + + YIHR G RAG
Sbjct: 281 PARLRALEGFKSRDVQILVATDVAARGLDIDDLPQVVNFDLPIVAEDYIHRIGRTGRAGA 340
Query: 91 NGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+G +LL DE LL ++ + L + A+ P H +P ++
Sbjct: 341 SGMAVSLLCADEAPLLAAIEMLTGQNLQRNAEQGFEPDHRVPETN 385
>gi|307209820|gb|EFN86616.1| Probable ATP-dependent RNA helicase DDX47 [Harpegnathos saltator]
Length = 286
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K +YL+ +L L G F++F ++ N+ +T R G H Q
Sbjct: 76 KFKDVYLVHILNELAGNSFMIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALT 135
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+L+ +D + G+D+ + K YIHR G ARAG++G T +
Sbjct: 136 KFKARNRSILISTDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFV 195
Query: 99 PK 100
+
Sbjct: 196 TQ 197
>gi|121700629|ref|XP_001268579.1| DEAD/DEAH box helicase, putative [Aspergillus clavatus NRRL 1]
gi|119396722|gb|EAW07153.1| DEAD/DEAH box helicase, putative [Aspergillus clavatus NRRL 1]
Length = 848
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 12/89 (13%)
Query: 19 LIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI--- 75
L P L N G I+ ++ + S KTL A+R +G + ++V +D + G+D++ ++
Sbjct: 696 LDPSLANQVG--TIIKSNKSSASRKTLTAYR-RGKISIIVATDRASRGLDLQSLTHVVNY 752
Query: 76 ------KTYIHRAGPRARAGQNGHCFTLL 98
TY+HR G ARAG+ G +TL+
Sbjct: 753 DVPPSVTTYVHRVGRTARAGKKGSAWTLV 781
>gi|118580947|ref|YP_902197.1| DEAD/DEAH box helicase [Pelobacter propionicus DSM 2379]
gi|118503657|gb|ABL00140.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
2379]
Length = 436
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 10/77 (12%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL F+ +G +VLV +D G+D+ER ++ + Y+HR G RAG++G
Sbjct: 285 RTLAEFK-RGEFRVLVATDVAARGLDIERLPHVVNYDLPQVPEDYVHRIGRTGRAGEDGV 343
Query: 94 CFTLLPKDEDKLLYMFQ 110
+L+ ++E LL +
Sbjct: 344 ALSLVSREEQPLLQAIE 360
>gi|114052016|ref|NP_001039850.1| probable ATP-dependent RNA helicase DDX47 [Bos taurus]
gi|109825481|sp|Q29S22.1|DDX47_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
Full=DEAD box protein 47
gi|88758683|gb|AAI13208.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Bos taurus]
gi|296487253|tpg|DAA29366.1| TPA: probable ATP-dependent RNA helicase DDX47 [Bos taurus]
Length = 457
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 249 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 308
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 309 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 368
Query: 98 LPK 100
+ +
Sbjct: 369 VTQ 371
>gi|403335713|gb|EJY67037.1| DEAD/DEAH box helicase family protein [Oxytricha trifallax]
Length = 972
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 39/76 (51%), Gaps = 13/76 (17%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMD---------VERAAYIKTYIHRAGPRARAGQNGHC 94
TLK FR G VLV +D + G+D VE ++TYIHR+G ARAG+ G C
Sbjct: 446 TLKRFR-DGKFSVLVATDVASRGLDIPNVDLVIQVEPPNEVETYIHRSGRTARAGKMGVC 504
Query: 95 FTLLPKDEDKLLYMFQ 110
T K K YM Q
Sbjct: 505 ITFYTK---KSQYMIQ 517
>gi|266619670|ref|ZP_06112605.1| ATP-dependent RNA helicase DbpA [Clostridium hathewayi DSM 13479]
gi|288868767|gb|EFD01066.1| ATP-dependent RNA helicase DbpA [Clostridium hathewayi DSM 13479]
Length = 483
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
KT+ AFR +G + L+ +D G+D ++ + +TY+HR G R G+NG
Sbjct: 287 KTVDAFR-RGGFRFLIATDVAARGIDFDKIDLVVNYDFPGGRETYVHRIGRTGRNGENGR 345
Query: 94 CFTLLPKDEDKLLYMFQ 110
+LL + E+++L+M +
Sbjct: 346 AVSLLCESEERMLHMVE 362
>gi|150863861|ref|XP_001382482.2| Dead-Box Protein 8, ATP-dependent helicase involved in rRNA
processing [Scheffersomyces stipitis CBS 6054]
gi|158514820|sp|A3LP87.2|DBP8_PICST RecName: Full=ATP-dependent RNA helicase DBP8
gi|149385117|gb|ABN64453.2| Dead-Box Protein 8, ATP-dependent helicase involved in rRNA
processing [Scheffersomyces stipitis CBS 6054]
Length = 445
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 18/144 (12%)
Query: 36 SSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRA 86
S NS + KA G ++L+ +D + G+D+ + +IHR G A
Sbjct: 290 SERTNSVQRFKA----GAARILIATDVASRGLDIPSVELVVNFDIPADPDDFIHRVGRTA 345
Query: 87 RAGQNGHCFTLLP-KDEDKLLYMFQ-VKRFKKLLQQADHDSCPVHSIPSSSI---ESLRP 141
RAG++G T++ KD D++ + + + + +LL++ DS S+ ++S+ ESL
Sbjct: 346 RAGRSGDAVTIIAEKDIDRIASIEERINKKMELLEEVTDDSVITDSLTATSVAKRESLME 405
Query: 142 IYKSEYVESQANRKRKIGFKLSRM 165
+ K + E + ++K G + ++
Sbjct: 406 MDKENFGEKRKINRKKRGLETEKI 429
>gi|119616690|gb|EAW96284.1| hCG27698, isoform CRA_d [Homo sapiens]
Length = 392
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 184 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 243
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 244 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 303
Query: 98 LPK 100
+ +
Sbjct: 304 VTQ 306
>gi|424069463|ref|ZP_17806909.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
gi|407994545|gb|EKG35116.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
Length = 442
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +++LV +D G+D++ + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKSN-EVKILVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE +LL +V + L ++ + D P H +PS+
Sbjct: 340 LTGEAISLVCADEVELLSAIEVLTRQTLERKEEQDFEPEHRVPSTD 385
>gi|330994043|ref|ZP_08317973.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter sp. SXCC-1]
gi|329758989|gb|EGG75503.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter sp. SXCC-1]
Length = 508
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 10/71 (14%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
TL+AF+ G +++LVCSD G+D+ +++ + Y+HR G RAG+ GH
Sbjct: 312 TLEAFK-SGELKILVCSDIAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGRTGHA 370
Query: 95 FTLLPKDEDKL 105
++L DE+ L
Sbjct: 371 YSLATPDEEAL 381
>gi|348569354|ref|XP_003470463.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Cavia porcellus]
Length = 455
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 246 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 305
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 306 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 365
Query: 98 LPK 100
+ +
Sbjct: 366 VTQ 368
>gi|315499118|ref|YP_004087922.1| dead/deah box helicase domain-containing protein [Asticcacaulis
excentricus CB 48]
gi|315417130|gb|ADU13771.1| DEAD/DEAH box helicase domain protein [Asticcacaulis excentricus CB
48]
Length = 605
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AF+ G ++ LV +D G+DV+ ++ + Y+HR G ARAG+ GH
Sbjct: 286 RALQAFKA-GRVRALVATDIAARGIDVDNVTHVINYELPFVAEAYVHRIGRTARAGKEGH 344
Query: 94 CFTLLPKDEDKLL 106
TL+ DE KLL
Sbjct: 345 SITLVADDERKLL 357
>gi|410028951|ref|ZP_11278787.1| DNA/RNA helicase [Marinilabilia sp. AK2]
Length = 570
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 14/94 (14%)
Query: 37 SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRAR 87
S A K + FR KGH+ VLV +D G+DV+ + + Y+HR G R
Sbjct: 279 SQAQRTKVMNKFR-KGHVSVLVATDVAARGIDVDNVEAVFNFDLPLDEENYVHRIGRTGR 337
Query: 88 AGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQA 121
AG++G + + +D MF++K +K ++ +
Sbjct: 338 AGKSGTAISFVTGRKD----MFRIKDLEKFIKTS 367
>gi|388502288|gb|AFK39210.1| unknown [Lotus japonicus]
Length = 460
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 36/124 (29%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPK--------------------------TL 45
SK K +YL+ +L ++ G+ IVFAS+ + + L
Sbjct: 235 SKFKDVYLVSILNDMSGKSIIVFASTCTTTLRLALLTRNLGFTTVPLHGQMSQTKRLGAL 294
Query: 46 KAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFT 96
F+GK +L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 295 NKFKGKAR-SILIATDVASRGLDIPHVDVVINYDIPNHSKDYIHRVGRTARAGRSGKSIT 353
Query: 97 LLPK 100
+ +
Sbjct: 354 FVTQ 357
>gi|407043980|gb|EKE42287.1| DEAD/DEAH box helicase, putative [Entamoeba nuttalli P19]
Length = 504
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 40 NSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQ 90
N K +K F +L+C+D + GMD + YI KTYIHR G AR G
Sbjct: 301 NRDKVIKKFEESCE-AILICTDVLARGMDFDNINYIIQYDPPQDPKTYIHRVGRTARMGS 359
Query: 91 NGHCFTLLPKDEDKLLYMFQVKRFK 115
GH L E + + + K K
Sbjct: 360 IGHSLIFLGTLEKSFILLMEKKNVK 384
>gi|344266640|ref|XP_003405388.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Loxodonta
africana]
Length = 461
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F+VF S+ N+ +T R G H Q
Sbjct: 253 SKFKDTYLVYILNELAGNSFMVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQTKRLGSL 312
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 313 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITF 372
Query: 98 LPK 100
+ +
Sbjct: 373 VTQ 375
>gi|389681720|ref|ZP_10173064.1| putative ATP-dependent RNA helicase [Pseudomonas chlororaphis O6]
gi|388554255|gb|EIM17504.1| putative ATP-dependent RNA helicase [Pseudomonas chlororaphis O6]
Length = 444
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +Q+LV +D G+D+E + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKAS-EIQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE LL ++ + L + + D P H +P +
Sbjct: 340 STGEAISLVCADEVNLLSAIEMLTRQTLKRHDEPDFIPDHRVPETD 385
>gi|372271032|ref|ZP_09507080.1| DEAD/DEAH box helicase [Marinobacterium stanieri S30]
Length = 433
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L AF+ K +QVLV +D G+D++ + + Y+HR G RAG +G
Sbjct: 284 KALNAFKTK-DIQVLVATDIAARGLDIDLLPQVVNFDLPNVAEDYVHRIGRTGRAGADGQ 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIE 137
+L+ DE L + K + ++ PVH +P SS++
Sbjct: 343 AVSLVSADEIDQLRAIERLTSKIIPREMIDGFEPVHELPESSLD 386
>gi|359396764|ref|ZP_09189815.1| ATP-dependent RNA helicase rhlE [Halomonas boliviensis LC1]
gi|357969442|gb|EHJ91890.1| ATP-dependent RNA helicase rhlE [Halomonas boliviensis LC1]
Length = 418
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 22/124 (17%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L AF+ G +QVLV +D G+D+ ++ + Y+HR G RAG NG
Sbjct: 284 RALTAFK-SGDLQVLVATDIAARGLDINELPHVVNFDLPNVAEDYVHRIGRTGRAGSNGE 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQAN 153
+L+ DED LL + +L++Q + P H P + P K E +E+
Sbjct: 343 AVSLVCVDEDALLGSIE-----RLIKQ----TLPKHIEPGFEPD---PSIKPEPIENGRR 390
Query: 154 RKRK 157
+R+
Sbjct: 391 NQRQ 394
>gi|296210930|ref|XP_002752172.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Callithrix jacchus]
Length = 455
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 247 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 306
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 307 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 366
Query: 98 LPK 100
+ +
Sbjct: 367 VTQ 369
>gi|354478220|ref|XP_003501313.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Cricetulus
griseus]
Length = 455
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 247 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 306
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 307 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 366
Query: 98 LPK 100
+ +
Sbjct: 367 VTQ 369
>gi|422640566|ref|ZP_16703992.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae Cit 7]
gi|440742523|ref|ZP_20921848.1| helicase [Pseudomonas syringae BRIP39023]
gi|330952956|gb|EGH53216.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae Cit 7]
gi|440377360|gb|ELQ14009.1| helicase [Pseudomonas syringae BRIP39023]
Length = 442
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +++LV +D G+D++ + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKSN-EVKILVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE +LL +V + L ++ + D P H +PS+
Sbjct: 340 LTGEAISLVCADEVELLSAIEVLTRQTLERKEEQDFEPEHRVPSTD 385
>gi|189208975|ref|XP_001940820.1| ATP-dependent RNA helicase DBP6 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976913|gb|EDU43539.1| ATP-dependent RNA helicase DBP6 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 643
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 11/83 (13%)
Query: 30 KFIVFASSVAN-SPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYI 79
+ ++F S N S K LK+F G +++L+ SDA + G+D+ ++ I +Y+
Sbjct: 504 RVLIFTKSTENASRKLLKSF-SSGAIKILIASDAASRGLDIPDISHVINYDLPTSITSYV 562
Query: 80 HRAGPRARAGQNGHCFTLLPKDE 102
HR G ARAG+ G +TL K E
Sbjct: 563 HRVGRTARAGKPGEAWTLFTKTE 585
>gi|149713746|ref|XP_001501494.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Equus caballus]
Length = 455
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 247 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 306
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 307 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 366
Query: 98 LPK 100
+ +
Sbjct: 367 VTQ 369
>gi|89074254|ref|ZP_01160744.1| putative ATP-dependent RNA helicase, DEAD box family protein
[Photobacterium sp. SKA34]
gi|89049958|gb|EAR55492.1| putative ATP-dependent RNA helicase, DEAD box family protein
[Photobacterium sp. SKA34]
Length = 427
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 52 GHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDE 102
G +VLV +D G+D+E+ Y+ + Y+HR G RAG GH TL+ DE
Sbjct: 305 GKTRVLVATDVAARGLDIEQLEYVVNFDMPFKAEDYVHRIGRTGRAGMTGHAITLMSLDE 364
Query: 103 DKLL 106
+ L
Sbjct: 365 EWAL 368
>gi|365880479|ref|ZP_09419846.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. ORS 375]
gi|365291464|emb|CCD92377.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. ORS 375]
Length = 481
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 11/83 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL AFR G ++ LV +D G+DV+ +++ +TY+HR G ARAG +G
Sbjct: 286 RTLAAFR-TGEIRTLVATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIGRTARAGADGV 344
Query: 94 CFTLLPKDEDKLLYMFQVKRFKK 116
+L+ D++ Y+ ++R K
Sbjct: 345 AISLV-AGSDEMSYLRDIERLTK 366
>gi|154340487|ref|XP_001566200.1| putative DEAD box RNA helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063519|emb|CAM39700.1| putative DEAD box RNA helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 389
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 14/98 (14%)
Query: 22 LLRNLGGEKFIVFASS----VANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI-- 75
L + + EKF V A A + ++ FR GH +VL+ +D G+DVER + +
Sbjct: 271 LAKKMTREKFTVVAMHGDMPQAERDEIMRQFR-DGHSRVLITTDLWARGIDVERVSLVLN 329
Query: 76 -------KTYIHRAGPRARAGQNGHCFTLLPKDEDKLL 106
+ YIHR G R G+ G T + DE +LL
Sbjct: 330 YDLPLAREQYIHRIGRTGRMGRTGLAITFVRHDELRLL 367
>gi|109095724|ref|XP_001086352.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 3
[Macaca mulatta]
Length = 455
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 247 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 306
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 307 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 366
Query: 98 LPK 100
+ +
Sbjct: 367 VTQ 369
>gi|449667317|ref|XP_002168355.2| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Hydra
magnipapillata]
Length = 429
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 75/195 (38%), Gaps = 55/195 (28%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSP--------------------------KTL 45
S++K YL+ LL+N + I+F + + +L
Sbjct: 225 SQVKDCYLVHLLQNFSEKSVIIFTQTCRSCQVISFMLRKVEFKCAGLHSVMSQRERLSSL 284
Query: 46 KAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFT 96
FR GH+++LV +D + G+D+ + K Y+HR G ARAG+ G T
Sbjct: 285 GRFRS-GHVKILVATDVASRGLDIPLVQLVINYNVPASPKDYVHRVGRTARAGRGGMSLT 343
Query: 97 LLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPI-----------YKS 145
LL + F + R K + + +++ L+PI +
Sbjct: 344 LLTQ--------FDIDRLKAIETFIGLKMKEFETNEDDAVKLLKPISIIRREVEIRLNDA 395
Query: 146 EYVESQANRKRKIGF 160
+ E + N KRK+G
Sbjct: 396 NFGEKKKNNKRKLGL 410
>gi|424073897|ref|ZP_17811310.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
gi|407995286|gb|EKG35820.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
Length = 450
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +++LV +D G+D++ + + YIHR G RAG
Sbjct: 289 ATRQRALDRFKSN-EVKILVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAG 347
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE +LL +V + L ++ + D P H +PS+
Sbjct: 348 LTGEAISLVCADEVELLSAIEVLTRQTLERKEEQDFEPEHRVPSTD 393
>gi|302184790|ref|ZP_07261463.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
syringae 642]
Length = 442
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +++LV +D G+D++ + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKSN-EVKILVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE +LL +V + L ++ + D P H +PS+
Sbjct: 340 LTGEAISLVCADEVELLSAIEVLTRQTLERKEEQDFEPEHRVPSTD 385
>gi|259416782|ref|ZP_05740702.1| ATP-dependent RNA helicase RhlE [Silicibacter sp. TrichCH4B]
gi|259348221|gb|EEW59998.1| ATP-dependent RNA helicase RhlE [Silicibacter sp. TrichCH4B]
Length = 490
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 11/73 (15%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
KTL FR G +++LV SD G+DV +++ + Y+HR G RAG+NG
Sbjct: 293 KTLDGFR-DGTLKILVASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGRNGK 351
Query: 94 CFTLL-PKDEDKL 105
TL P+DE L
Sbjct: 352 AITLCSPRDEKAL 364
>gi|355564029|gb|EHH20529.1| Putative ATP-dependent RNA helicase DDX47 [Macaca mulatta]
gi|355785916|gb|EHH66099.1| Putative ATP-dependent RNA helicase DDX47 [Macaca fascicularis]
gi|380786753|gb|AFE65252.1| putative ATP-dependent RNA helicase DDX47 isoform 1 [Macaca
mulatta]
gi|383418889|gb|AFH32658.1| putative ATP-dependent RNA helicase DDX47 isoform 1 [Macaca
mulatta]
Length = 455
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 247 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 306
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 307 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 366
Query: 98 LPK 100
+ +
Sbjct: 367 VTQ 369
>gi|345851373|ref|ZP_08804349.1| helicase [Streptomyces zinciresistens K42]
gi|345637129|gb|EGX58660.1| helicase [Streptomyces zinciresistens K42]
Length = 506
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG +G
Sbjct: 331 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGASGT 389
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 390 AITLVDWDD 398
>gi|422648106|ref|ZP_16711231.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
maculicola str. ES4326]
gi|330961645|gb|EGH61905.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 442
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +++LV +D G+D++ + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKSN-EVKILVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE +LL +V + L ++ + D P H +PS+
Sbjct: 340 LTGEAISLVCADEVELLSAIEVLTRQTLERREEQDFEPEHRVPSTD 385
>gi|422629207|ref|ZP_16694412.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. pisi str.
1704B]
gi|440722312|ref|ZP_20902694.1| helicase [Pseudomonas syringae BRIP34876]
gi|440726025|ref|ZP_20906283.1| helicase [Pseudomonas syringae BRIP34881]
gi|443642246|ref|ZP_21126096.1| DEAD-like superfamily RNA helicase [Pseudomonas syringae pv.
syringae B64]
gi|330938172|gb|EGH41869.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. pisi str.
1704B]
gi|440361501|gb|ELP98728.1| helicase [Pseudomonas syringae BRIP34876]
gi|440367408|gb|ELQ04471.1| helicase [Pseudomonas syringae BRIP34881]
gi|443282263|gb|ELS41268.1| DEAD-like superfamily RNA helicase [Pseudomonas syringae pv.
syringae B64]
Length = 442
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +++LV +D G+D++ + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKSN-EVKILVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE +LL +V + L ++ + D P H +PS+
Sbjct: 340 LTGEAISLVCADEVELLSAIEVLTRQTLERKEEQDFEPEHRVPSTD 385
>gi|90578695|ref|ZP_01234505.1| putative ATP-dependent RNA helicase, DEAD boxfamily protein
[Photobacterium angustum S14]
gi|90439528|gb|EAS64709.1| putative ATP-dependent RNA helicase, DEAD boxfamily protein
[Photobacterium angustum S14]
Length = 427
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 52 GHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDE 102
G +VLV +D G+D+E+ Y+ + Y+HR G RAG GH TL+ DE
Sbjct: 305 GKTRVLVATDVAARGLDIEQLEYVVNFDMPFKAEDYVHRIGRTGRAGMTGHAITLMSLDE 364
Query: 103 DKLLYMFQVKRFKKLLQQ 120
+ L + +L QQ
Sbjct: 365 EWALKAIEELLDSRLPQQ 382
>gi|350398997|ref|XP_003485378.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Bombus
impatiens]
Length = 453
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K +YL+ +L L G F++F ++ N+ +T R G H Q
Sbjct: 242 KFKDVYLVHILNELAGNSFMIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALT 301
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+L+ +D + G+D+ + K YIHR G ARAG++G T +
Sbjct: 302 KFKAKNRSILISTDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFV 361
Query: 99 PK 100
+
Sbjct: 362 TQ 363
>gi|344243858|gb|EGV99961.1| putative ATP-dependent RNA helicase DDX47 [Cricetulus griseus]
Length = 586
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 34/129 (26%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 378 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 437
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 438 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 497
Query: 98 LPKDEDKLL 106
+ + + +L
Sbjct: 498 VTQYDVELF 506
>gi|39644716|gb|AAH09379.2| DDX47 protein, partial [Homo sapiens]
Length = 450
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 242 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 301
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 302 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 361
Query: 98 LPK 100
+ +
Sbjct: 362 VTQ 364
>gi|66550432|ref|XP_395653.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Apis mellifera]
Length = 452
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K +YL+ +L L G F++F ++ N+ +T R G H Q
Sbjct: 242 KFKDVYLVHILNELAGNSFMIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALT 301
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+L+ +D + G+D+ + K YIHR G ARAG++G T +
Sbjct: 302 KFKAKNRSILISTDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFV 361
Query: 99 PK 100
+
Sbjct: 362 TQ 363
>gi|383851888|ref|XP_003701463.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like
[Megachile rotundata]
Length = 449
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 52 GHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDE 102
H+Q+L+ +D G+D+ + K YIHR G ARAG+ G TL+ ++
Sbjct: 295 NHIQILIATDVAARGLDIPTVELVVNHIVPNVPKEYIHRVGRTARAGKGGMAITLIAPND 354
Query: 103 DKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSI---ESLRPIYKSEYVESQANRKRK 157
KLL+ + KL + +D+ + + S+ E+ + ++++ E + KRK
Sbjct: 355 IKLLHAVEEAIGTKLTEYKVNDTEIIKILTQISVAKREAEMKLDETDFYEKKRINKRK 412
>gi|422671770|ref|ZP_16731135.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. aceris
str. M302273]
gi|330969509|gb|EGH69575.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. aceris
str. M302273]
Length = 442
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +++LV +D G+D++ + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKSN-EVKILVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE +LL +V + L ++ + D P H +PS+
Sbjct: 340 LTGEAISLVCADEVELLSAIEVLTRQTLERKEEQDFEPEHRVPSTD 385
>gi|113971464|ref|YP_735257.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-4]
gi|113886148|gb|ABI40200.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
Length = 549
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 10/118 (8%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G ++VLV +D G+D+++ + + Y+HR G RAG G
Sbjct: 284 KALADFKS-GEVRVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGALGQ 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQ 151
+L+ +E KLL + + L +Q PVH++P S++ + K + V SQ
Sbjct: 343 AVSLVSSEETKLLRDIERLINRVLERQEVEGFSPVHALPESTLNAHGKENKIKAVASQ 400
>gi|402885238|ref|XP_003906071.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Papio anubis]
Length = 455
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 247 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 306
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 307 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 366
Query: 98 LPK 100
+ +
Sbjct: 367 VTQ 369
>gi|431908355|gb|ELK11952.1| Putative ATP-dependent RNA helicase DDX47 [Pteropus alecto]
Length = 472
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 264 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 323
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 324 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 383
Query: 98 LPK 100
+ +
Sbjct: 384 VTQ 386
>gi|380013608|ref|XP_003690844.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Apis
florea]
Length = 452
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K +YL+ +L L G F++F ++ N+ +T R G H Q
Sbjct: 242 KFKDVYLVHILNELAGNSFMIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALT 301
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+L+ +D + G+D+ + K YIHR G ARAG++G T +
Sbjct: 302 KFKAKNRSILISTDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFV 361
Query: 99 PK 100
+
Sbjct: 362 TQ 363
>gi|440503047|gb|AGC09620.1| putative DEAD/DEAH box helicase domain protein [uncultured
bacterium]
Length = 281
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 15/108 (13%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCF 95
L+ FR H +VLV ++ G+DVE +++ + Y+HR G ARA +G
Sbjct: 148 LEGFRAGKH-RVLVATNIAARGLDVEGISHVINYDVPEHAEDYVHRIGRTARAEADGDAI 206
Query: 96 TLLPKDEDKLLY----MFQVKRFKKLLQQADHDSCPVHSIPSSSIESL 139
TL+ D++ L+Y + K +K L D+D PV S S E+L
Sbjct: 207 TLVTPDDEALIYRIEHLLGRKLERKTLPDFDYD-VPVPSWAKPSAEAL 253
>gi|66047524|ref|YP_237365.1| helicase [Pseudomonas syringae pv. syringae B728a]
gi|63258231|gb|AAY39327.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Pseudomonas syringae pv. syringae B728a]
Length = 442
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +++LV +D G+D++ + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKSN-EVKILVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE +LL +V + L ++ + D P H +PS+
Sbjct: 340 LTGEAISLVCADEVELLSAIEVLTRQTLERKEEQDFEPEHRVPSTD 385
>gi|73997167|ref|XP_534885.2| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Canis lupus familiaris]
Length = 456
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 247 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 306
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 307 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 366
Query: 98 LPK 100
+ +
Sbjct: 367 VTQ 369
>gi|301765212|ref|XP_002918022.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Ailuropoda melanoleuca]
Length = 455
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 247 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 306
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 307 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 366
Query: 98 LPK 100
+ +
Sbjct: 367 VTQ 369
>gi|11121196|emb|CAC14786.1| DEAD box protein [Homo sapiens]
Length = 455
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 247 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 306
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 307 NKFKAKESSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 366
Query: 98 LPK 100
+ +
Sbjct: 367 VTQ 369
>gi|410963864|ref|XP_003988479.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Felis catus]
Length = 455
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 247 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 306
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 307 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 366
Query: 98 LPK 100
+ +
Sbjct: 367 VTQ 369
>gi|319949507|ref|ZP_08023558.1| DEAD/DEAH box helicase [Dietzia cinnamea P4]
gi|319436821|gb|EFV91890.1| DEAD/DEAH box helicase [Dietzia cinnamea P4]
Length = 499
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K+LKAFR G + VLV +D G+DV+ ++ KTY+HR G RAG+ G
Sbjct: 313 KSLKAFR-SGDVDVLVATDVAARGIDVDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGV 371
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 372 AVTLVDWDD 380
>gi|291392610|ref|XP_002712705.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1
[Oryctolagus cuniculus]
Length = 455
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 34/129 (26%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 247 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 306
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 307 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 366
Query: 98 LPKDEDKLL 106
+ + + +L
Sbjct: 367 VTQYDVELF 375
>gi|62897439|dbj|BAD96660.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 variant [Homo
sapiens]
Length = 448
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 240 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 299
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 300 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 359
Query: 98 LPK 100
+ +
Sbjct: 360 VTQ 362
>gi|397474910|ref|XP_003808899.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Pan paniscus]
Length = 455
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 247 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 306
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 307 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 366
Query: 98 LPK 100
+ +
Sbjct: 367 VTQ 369
>gi|333899033|ref|YP_004472906.1| DEAD/DEAH box helicase [Pseudomonas fulva 12-X]
gi|333114298|gb|AEF20812.1| DEAD/DEAH box helicase domain protein [Pseudomonas fulva 12-X]
Length = 442
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+ F+ G + VLV +D G+D++ + + Y+HR G RAG +G
Sbjct: 285 RALQRFKA-GEVDVLVATDVAARGLDIDDLPLVVNFDLPIVAEDYVHRIGRTGRAGASGQ 343
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADH-DSCPVHSIPSS 134
+L+ DE +LL + +++LQ+ D D P H +P +
Sbjct: 344 AVSLVCADEVQLLSAIEA-LIQQILQRVDEPDFIPDHRVPQT 384
>gi|297691246|ref|XP_002823001.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Pongo abelii]
Length = 455
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 247 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 306
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 307 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 366
Query: 98 LPK 100
+ +
Sbjct: 367 VTQ 369
>gi|167625497|ref|YP_001675791.1| DEAD/DEAH box helicase [Shewanella halifaxensis HAW-EB4]
gi|167355519|gb|ABZ78132.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 492
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G ++VLV +D G+D+++ + + Y+HR G RAG +GH
Sbjct: 284 KALADFK-SGAVRVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGH 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSI 136
+L+ +E KLL ++ + L ++ P HS+P + +
Sbjct: 343 AVSLVSSEEIKLLRDIELLIKQNLERRPVEGFEPTHSLPETDL 385
>gi|146338133|ref|YP_001203181.1| ATP-dependent RNA helicase [Bradyrhizobium sp. ORS 278]
gi|146190939|emb|CAL74944.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. ORS 278]
Length = 473
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 11/83 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL AFR G ++ LV +D G+DV+ +++ +TY+HR G ARAG +G
Sbjct: 286 RTLAAFR-TGEIRTLVATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIGRTARAGADGV 344
Query: 94 CFTLLPKDEDKLLYMFQVKRFKK 116
+L+ D++ Y+ ++R K
Sbjct: 345 AISLV-AGADEMSYLRDIERLTK 366
>gi|117919262|ref|YP_868454.1| DEAD/DEAH box helicase [Shewanella sp. ANA-3]
gi|117611594|gb|ABK47048.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
Length = 578
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 10/118 (8%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G ++VLV +D G+D+++ + + Y+HR G RAG G
Sbjct: 284 KALADFKS-GEVRVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGALGQ 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQ 151
+L+ +E KLL + + L +Q PVH++P S++ + K + V SQ
Sbjct: 343 AVSLVSSEETKLLRDIERLINRVLERQEVEGFSPVHTLPESTLNAHGKENKIKAVASQ 400
>gi|357031714|ref|ZP_09093657.1| ATP-dependent RNA helicase [Gluconobacter morbifer G707]
gi|356414944|gb|EHH68588.1| ATP-dependent RNA helicase [Gluconobacter morbifer G707]
Length = 573
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 16/103 (15%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
TL +F+ G +++LVCSD G+D+ +++ + Y+HR G RAG+ GH
Sbjct: 345 TLDSFK-NGDLKILVCSDVAARGIDIGGLSHVFNFDLPFNAEDYVHRIGRTGRAGKEGHA 403
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIE 137
F++ + KLL + K +++Q V IPS+ E
Sbjct: 404 FSIAGPRDQKLLEAIEALTGKAIVRQ------DVPGIPSTDWE 440
>gi|299829301|ref|NP_001015005.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Rattus norvegicus]
gi|149049184|gb|EDM01638.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_a [Rattus
norvegicus]
Length = 455
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 247 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 306
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 307 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 366
Query: 98 LPK 100
+ +
Sbjct: 367 VTQ 369
>gi|20149629|ref|NP_057439.2| probable ATP-dependent RNA helicase DDX47 isoform 1 [Homo sapiens]
gi|52782792|sp|Q9H0S4.1|DDX47_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
Full=DEAD box protein 47
gi|12052856|emb|CAB66601.1| hypothetical protein [Homo sapiens]
gi|45786091|gb|AAH68009.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Homo sapiens]
gi|117645464|emb|CAL38198.1| hypothetical protein [synthetic construct]
gi|119616683|gb|EAW96277.1| hCG2044052 [Homo sapiens]
gi|119616687|gb|EAW96281.1| hCG27698, isoform CRA_a [Homo sapiens]
gi|193785403|dbj|BAG54556.1| unnamed protein product [Homo sapiens]
Length = 455
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 247 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 306
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 307 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 366
Query: 98 LPK 100
+ +
Sbjct: 367 VTQ 369
>gi|402698353|ref|ZP_10846332.1| ATP-dependent RNA helicase [Pseudomonas fragi A22]
Length = 445
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 61/160 (38%), Gaps = 34/160 (21%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG----------------- 52
+ K KP + LLR ++ +VFA + + + +G G
Sbjct: 226 VDKKRKPELFLHLLRTQQWKQVLVFAKTRNGVDELVGKLQGLGINADGIHGDKPQATRQR 285
Query: 53 --------HMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCF 95
+Q+LV +D G+D+E + + YIHR G RAGQ G
Sbjct: 286 ALDRFKASEVQILVATDVAARGLDIEDLPLVINFDMPIVAEDYIHRIGRTGRAGQKGEAI 345
Query: 96 TLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+ + DE +L ++ + L + D P H +P +
Sbjct: 346 SFVCADEVNMLSAIEMLTRQTLPRHEQQDFEPEHRVPETD 385
>gi|426371741|ref|XP_004052800.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Gorilla gorilla gorilla]
Length = 455
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 247 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 306
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 307 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 366
Query: 98 LPK 100
+ +
Sbjct: 367 VTQ 369
>gi|16549139|dbj|BAB70762.1| unnamed protein product [Homo sapiens]
Length = 455
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 247 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 306
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 307 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 366
Query: 98 LPK 100
+ +
Sbjct: 367 VTQ 369
>gi|374600649|ref|ZP_09673651.1| DEAD/DEAH box helicase domain protein [Myroides odoratus DSM 2801]
gi|423325748|ref|ZP_17303588.1| hypothetical protein HMPREF9716_02945 [Myroides odoratimimus CIP
103059]
gi|373912119|gb|EHQ43968.1| DEAD/DEAH box helicase domain protein [Myroides odoratus DSM 2801]
gi|404605468|gb|EKB05065.1| hypothetical protein HMPREF9716_02945 [Myroides odoratimimus CIP
103059]
Length = 637
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 12/89 (13%)
Query: 37 SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRAR 87
S A +KAFRGK +Q+LV +D G+DV+ + I+TY HR+G R
Sbjct: 277 SQAQRDSVMKAFRGK-QIQMLVATDVAARGIDVDDITHVVNYQLPDEIETYTHRSGRTGR 335
Query: 88 AGQNGHCFTLLPKDEDKLLYMFQVKRFKK 116
AG++G ++ K E + + Q++R K
Sbjct: 336 AGKSGVSMVIITKSEARKIS--QIERIMK 362
>gi|365891188|ref|ZP_09429640.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. STM 3809]
gi|365332881|emb|CCE02171.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. STM 3809]
Length = 473
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 11/83 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL AFR G ++ LV +D G+DV+ +++ +TY+HR G ARAG +G
Sbjct: 286 RTLAAFR-TGEIRTLVATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIGRTARAGADGV 344
Query: 94 CFTLLPKDEDKLLYMFQVKRFKK 116
+L+ D++ Y+ ++R K
Sbjct: 345 AISLV-AGADEMSYLRDIERLTK 366
>gi|27229058|ref|NP_080636.2| probable ATP-dependent RNA helicase DDX47 [Mus musculus]
gi|52782790|sp|Q9CWX9.2|DDX47_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
Full=DEAD box protein 47
gi|26345792|dbj|BAC36547.1| unnamed protein product [Mus musculus]
gi|26368455|dbj|BAB26843.2| unnamed protein product [Mus musculus]
gi|66365081|gb|AAH95944.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
gi|124297422|gb|AAI32243.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
gi|124298172|gb|AAI32245.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
gi|148678592|gb|EDL10539.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_b [Mus
musculus]
Length = 455
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 247 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 306
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 307 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 366
Query: 98 LPK 100
+ +
Sbjct: 367 VTQ 369
>gi|388468703|ref|ZP_10142913.1| putative ATP-dependent RNA helicase [Pseudomonas synxantha BG33R]
gi|388012283|gb|EIK73470.1| putative ATP-dependent RNA helicase [Pseudomonas synxantha BG33R]
Length = 444
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 53 HMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDED 103
+Q+LV +D G+D+E + + YIHR G RAG G +L+ DE
Sbjct: 294 EVQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEV 353
Query: 104 KLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L ++ + L ++ + D P H +P +
Sbjct: 354 NMLSAIEMLTRQTLTRKMEADFEPEHRVPDTD 385
>gi|351711397|gb|EHB14316.1| Putative ATP-dependent RNA helicase DDX47 [Heterocephalus glaber]
Length = 454
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 246 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 305
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 306 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 365
Query: 98 LPK 100
+ +
Sbjct: 366 VTQ 368
>gi|323141176|ref|ZP_08076077.1| putative DEAD-box ATP-dependent RNA helicase CshA
[Phascolarctobacterium succinatutens YIT 12067]
gi|322414319|gb|EFY05137.1| putative DEAD-box ATP-dependent RNA helicase CshA
[Phascolarctobacterium succinatutens YIT 12067]
Length = 418
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 37 SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRAR 87
S A +KAFR +Q+LV SD G+DVE ++ Y+HR G R
Sbjct: 276 SPAKRKTVMKAFR-DAKIQILVASDLAARGLDVEGVTHVVNYDIPHDVDWYVHRIGRTGR 334
Query: 88 AGQNGHCFTLLPKDEDKLLYMFQVK 112
AG G TL DE K L + K
Sbjct: 335 AGNEGEAITLYTADEVKWLRNIETK 359
>gi|158298749|ref|XP_318913.4| AGAP009808-PA [Anopheles gambiae str. PEST]
gi|157014035|gb|EAA14161.4| AGAP009808-PA [Anopheles gambiae str. PEST]
Length = 510
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRG--------KGHM--------- 54
++ K +YL+ +L L G F++F S+ N+ +T R G M
Sbjct: 279 ARYKNVYLVHVLNELAGNSFMIFCSTCNNTVRTALMLRALGLAAVPLHGQMTQNKRLAAL 338
Query: 55 --------QVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
Q+L+ +D + G+D+ + K YIHR G ARAG+ G T
Sbjct: 339 NKFKSQARQILISTDVASRGLDIPHVDVVLNLDIPMHSKDYIHRVGRTARAGRAGQAITF 398
Query: 98 LPK 100
+ +
Sbjct: 399 VTQ 401
>gi|32490970|ref|NP_871224.1| hypothetical protein WGLp221 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166176|dbj|BAC24367.1| deaD [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 583
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
KTL F+ G + +LV +D G+DV+R + + ++YIHR G RAG+ G
Sbjct: 286 KTLNRFKT-GLLDILVATDVAARGLDVDRISLVINYDIPLDVESYIHRIGRTGRAGRTGK 344
Query: 94 CFTLLPKDEDKLLYMFQ 110
+ E K+LY +
Sbjct: 345 ALMFVENRERKILYNIE 361
>gi|347760106|ref|YP_004867667.1| DNA/RNA helicase [Gluconacetobacter xylinus NBRC 3288]
gi|347579076|dbj|BAK83297.1| DNA/RNA helicase [Gluconacetobacter xylinus NBRC 3288]
Length = 568
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 10/71 (14%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
TL+AF+ G +++LVCSD G+D+ +++ + Y+HR G RAG+ GH
Sbjct: 378 TLEAFK-SGELKILVCSDIAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGRTGHA 436
Query: 95 FTLLPKDEDKL 105
++L DE+ L
Sbjct: 437 YSLATPDEEAL 447
>gi|307214659|gb|EFN89598.1| Probable ATP-dependent RNA helicase DDX47 [Harpegnathos saltator]
Length = 377
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K +YL+ +L L G F++F ++ N+ +T R G H Q
Sbjct: 167 KFKDVYLVHILNELAGNSFMIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALT 226
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+L+ +D + G+D+ + K YIHR G ARAG++G T +
Sbjct: 227 KFKARNRSILISTDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFV 286
Query: 99 PK 100
+
Sbjct: 287 TQ 288
>gi|260426960|ref|ZP_05780939.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
gi|260421452|gb|EEX14703.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
Length = 473
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 21/125 (16%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL FR G +++L+ SD G+DV +++ + Y+HR G RAG+ G
Sbjct: 293 RTLDGFR-DGSIRLLIASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGREGK 351
Query: 94 CFTLL-PKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQA 152
FT++ P+DE + +KLLQ+ P +P+ S + P + E S+
Sbjct: 352 AFTIVSPRDEKNF------EDVEKLLQK----EIPRVELPNMSAPAAVPTPEPEDTASED 401
Query: 153 NRKRK 157
++K
Sbjct: 402 QGEKK 406
>gi|399000982|ref|ZP_10703702.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM18]
gi|398128737|gb|EJM18119.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM18]
Length = 444
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 62/160 (38%), Gaps = 34/160 (21%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG----------------- 52
+ K KP I L+R ++ +VFA + ++ +G G
Sbjct: 226 VDKKRKPELFIHLMRKGKWKQVLVFAKTRNGVDALVEKLQGLGVNADGIHGDKPQATRQR 285
Query: 53 --------HMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCF 95
+Q+LV +D G+D+E + + YIHR G RAG G
Sbjct: 286 ALDRFKASEVQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGATGQAI 345
Query: 96 TLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L+ DE L ++ + L +Q + D P H +P +
Sbjct: 346 SLVCADEVNQLSAIEMLTRQTLTRQMEPDFEPEHRVPDTD 385
>gi|225174307|ref|ZP_03728306.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
AHT 1]
gi|225170092|gb|EEG78887.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
AHT 1]
Length = 424
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 11/75 (14%)
Query: 37 SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRAR 87
S A + +K FR + H+Q+LV +D G+DVE ++ ++YIHR G R
Sbjct: 276 SQAKREQVMKRFR-QAHIQLLVATDVAARGLDVEGITHVFNYDIPQDLESYIHRIGRTGR 334
Query: 88 AGQNGHCFTLL-PKD 101
AG+ G TL+ PKD
Sbjct: 335 AGEKGLALTLVAPKD 349
>gi|350537559|ref|NP_001233477.1| probable ATP-dependent RNA helicase DDX47 [Pan troglodytes]
gi|343958142|dbj|BAK62926.1| apolipoprotein-L domain-containing protein 1 [Pan troglodytes]
gi|410264252|gb|JAA20092.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Pan troglodytes]
gi|410305384|gb|JAA31292.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Pan troglodytes]
gi|410329313|gb|JAA33603.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Pan troglodytes]
Length = 455
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 247 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 306
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 307 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 366
Query: 98 LPK 100
+ +
Sbjct: 367 VTQ 369
>gi|499204|gb|AAC14192.1| D-E-A-D box protein [Drosophila melanogaster]
Length = 644
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 48/158 (30%)
Query: 5 LSPQIC--ESKLKPIYLIPLLRNLGGEKFIVFASSVANSPK---TLKAFRGK-------- 51
L+ Q C E +LKP+ + L+ ++F+ F +S + + LK K
Sbjct: 419 LTEQYCVTELRLKPLTVFALVEKYKWKRFLCFTNSSDQATRLTFVLKVLFQKYSTKVSEL 478
Query: 52 ------------------GHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGP 84
G + L+CSDA+ G+DV E +I TYIHR G
Sbjct: 479 SGNLSAKVRNERLRDFAAGKINGLICSDALARGIDVADVDVVLSYETPRHITTYIHRVGR 538
Query: 85 RARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQAD 122
ARAG+ G T+L + + L FKK+L A+
Sbjct: 539 TARAGRKGTAVTVLTEQDMTL--------FKKILSDAN 568
>gi|77461141|ref|YP_350648.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens Pf0-1]
gi|77385144|gb|ABA76657.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1]
Length = 446
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 53 HMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDED 103
+Q+LV +D G+D+E + + YIHR G RAG G +L+ DE
Sbjct: 294 EVQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCADEV 353
Query: 104 KLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L ++ L ++ + D P H +P +
Sbjct: 354 NMLSAIEMLTRSTLKREIEPDFVPEHRVPDTD 385
>gi|39996017|ref|NP_951968.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
gi|39982782|gb|AAR34241.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
Length = 447
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 18/137 (13%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCF 95
L FR G Q+LV +D G+DV + +++ + YIHR G RA ++G F
Sbjct: 282 LDGFR-DGTFQILVATDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAF 340
Query: 96 TLLPKDEDKLLYMFQ----VKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQ 151
TL+ D+ ++ + ++ +Q D+ S P P +E RP +
Sbjct: 341 TLVTSDDGAMVRAIERSLGAPIERRTVQGFDY-SVPA---PKKDVEFARPPREPRQARPH 396
Query: 152 ANRKRKIGFKLSRMVKG 168
AN+ +K G S G
Sbjct: 397 ANQPKKGGAAASPSASG 413
>gi|410094143|ref|ZP_11290596.1| ATP-dependent RNA helicase rhlE [Pseudomonas viridiflava UASWS0038]
gi|409758453|gb|EKN43752.1| ATP-dependent RNA helicase rhlE [Pseudomonas viridiflava UASWS0038]
Length = 442
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +++LV +D G+D++ + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKSN-EVKILVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE +LL +V + L ++ + D P H +PS+
Sbjct: 340 LTGEAISLVCADEVELLSAIEVLTRQTLERREEQDFEPEHRVPSTD 385
>gi|307109393|gb|EFN57631.1| hypothetical protein CHLNCDRAFT_20835, partial [Chlorella
variabilis]
Length = 608
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
TL FR G VLV +D G+D+ + +TYIHR+G RAGQ G C
Sbjct: 297 TLAGFR-SGKFSVLVATDVAARGLDISGVELVIQLEPPKDPETYIHRSGRTGRAGQTGIC 355
Query: 95 FTLLPKDEDKLLYMFQVK 112
TL+ + ++ L+ Q K
Sbjct: 356 LTLVDRRKEGLIPYIQTK 373
>gi|389576917|ref|ZP_10166945.1| DNA/RNA helicase, superfamily II [Eubacterium cellulosolvens 6]
gi|389312402|gb|EIM57335.1| DNA/RNA helicase, superfamily II [Eubacterium cellulosolvens 6]
Length = 524
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 28/128 (21%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
TL+ ++ GH VLV +D + G+D+ +++ + YIHR G RAG++G
Sbjct: 282 TLEGYKA-GHFHVLVATDVASRGLDIPEVSHVINFNLPQEPEAYIHRIGRTGRAGESGIA 340
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIE---SLRPIYKSEYVESQ 151
TL +DE LL K +K+L++ IP E LR K+ V +
Sbjct: 341 ITLCEEDEMDLL-----KEVEKILKR---------EIPEMKTEYSIVLRG-KKNGAVPAA 385
Query: 152 ANRKRKIG 159
+R+RK+G
Sbjct: 386 GDRRRKVG 393
>gi|114765123|ref|ZP_01444268.1| putative ATP-dependent RNA helicase protein [Pelagibaca bermudensis
HTCC2601]
gi|114542527|gb|EAU45553.1| putative ATP-dependent RNA helicase protein [Roseovarius sp.
HTCC2601]
Length = 430
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ +KAFR G + VLV +D G+D+ AY+ Y+HR G ARAG+ G
Sbjct: 286 RAIKAFR-DGDINVLVATDVAARGIDIPGVAYVVNYDLPEVPDNYVHRIGRTARAGREGE 344
Query: 94 CFTLLPKDEDKLLYMFQ 110
DE LL Q
Sbjct: 345 AIAFCAPDEADLLRQIQ 361
>gi|403417594|emb|CCM04294.1| predicted protein [Fibroporia radiculosa]
Length = 707
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 60/175 (34%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFR------------------- 49
+C+S KP+ L L+ G +VF S ++ + ++ F
Sbjct: 495 VCDSASKPLMLFQLVHGHGVTNALVFTKSAESTTRLMRLFEFFEGAYSGGPDPSGSIPKS 554
Query: 50 ----------------------GKGHMQVLVCSDAMTSGMDVERAAYI---------KTY 78
+ +L+CSD ++ G+D+ +++ + Y
Sbjct: 555 IVTKAYSSDLSPGERKLILDKFKNQEIHILICSDLISRGIDISHVSHVVSYDAPIDMRKY 614
Query: 79 IHRAGPRARAGQNGHCFTLLPKDEDKLLYMF----------QVKRFKKLLQQADH 123
+HR G ARAG+ G +TL+ + E + F Q + FK +++ A H
Sbjct: 615 VHRVGRTARAGRAGDAWTLVEEQEVPIWLGFSGLKVDQISLQARHFKSMMKDAAH 669
>gi|383825179|ref|ZP_09980330.1| putative ATP-dependent RNA helicase [Mycobacterium xenopi
RIVM700367]
gi|383335581|gb|EID14011.1| putative ATP-dependent RNA helicase [Mycobacterium xenopi
RIVM700367]
Length = 455
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 44/92 (47%), Gaps = 16/92 (17%)
Query: 25 NLGGEKFIVFA-----SSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---- 75
L G F V A VA K LKAFR G + VLV +D G+D++ ++
Sbjct: 254 ELAGRGFAVGAVHGDLGQVARE-KALKAFR-SGAIDVLVATDVAARGIDIDDVTHVINYQ 311
Query: 76 -----KTYIHRAGPRARAGQNGHCFTLLPKDE 102
KTY+HR G RAG+ G TL+ DE
Sbjct: 312 CPEDEKTYVHRIGRTGRAGRTGVAVTLVDWDE 343
>gi|198423018|ref|XP_002125988.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
[Ciona intestinalis]
Length = 718
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
++LK F+ G + +LVC+D G+D+E + + Y+HR G ARAG++G
Sbjct: 457 ESLKRFKN-GDIDILVCTDLAARGLDIENVKTVINLTMPNTQQHYVHRVGRTARAGKSGR 515
Query: 94 CFTLLPKDEDKLL 106
+L+ + E KLL
Sbjct: 516 SVSLVGETERKLL 528
>gi|417401266|gb|JAA47524.1| Putative atp-dependent rna helicase [Desmodus rotundus]
Length = 455
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 247 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMNQSKRLGSL 306
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 307 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 366
Query: 98 LPK 100
+ +
Sbjct: 367 VTQ 369
>gi|409422582|ref|ZP_11259673.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
HYS]
Length = 443
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 63/160 (39%), Gaps = 34/160 (21%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG----------------- 52
+ K KP L+R ++ +VFA + + ++ RG+G
Sbjct: 226 VDKKRKPELFSHLMRKQRWKQVLVFAKTRNGVDQLVERLRGQGVNADGIHGDKPQATRQR 285
Query: 53 --------HMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCF 95
+Q+LV +D G+D++ + + YIHR G R G +G
Sbjct: 286 ALDSFKAREIQILVATDVAARGLDIDDLPLVVNFDLPIVAEDYIHRIGRTGRKGNSGEAI 345
Query: 96 TLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L+ DE +LL + K L + + D P H +P +
Sbjct: 346 SLVCADEVQLLSAIETLTRKTLPRHEEPDFIPDHKVPMTD 385
>gi|117646246|emb|CAL38590.1| hypothetical protein [synthetic construct]
gi|208967637|dbj|BAG72464.1| apolipoprotein L domain containing 1 [synthetic construct]
Length = 455
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 247 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 306
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 307 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 366
Query: 98 LPK 100
+ +
Sbjct: 367 VTQ 369
>gi|406860112|gb|EKD13172.1| ATP-dependent rRNA helicase RRP3 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 497
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 36/119 (30%)
Query: 15 KPIYLIPLLRNLGGEKFIVFASSVANSPK--------------------------TLKAF 48
K +YL+ L+ G+ I+F +V + + L F
Sbjct: 297 KDVYLVYLMNEFAGQSAIIFTRTVNETQRLAILLRSLGFGAIPLHGQLSQTARLGALNKF 356
Query: 49 RGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
R G ++LV +D G+D+ + KTYIHR G ARAG++GH F+++
Sbjct: 357 RA-GTRKILVATDVAARGLDIPSVDIVLNYDLPPESKTYIHRVGRTARAGKSGHAFSIV 414
>gi|440632967|gb|ELR02886.1| hypothetical protein GMDG_01108 [Geomyces destructans 20631-21]
Length = 870
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 36 SSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRA 86
+S + +TL++FR G + VL+ SD + G+D+ A+ I +Y+HR G A
Sbjct: 733 TSTTSRKRTLRSFRS-GALSVLIASDLVARGLDLPNLAHVVNYDMPTSITSYVHRVGRTA 791
Query: 87 RAGQNGHCFTLLPKDEDKLLY 107
RAG+ G TL E + +
Sbjct: 792 RAGKEGAATTLFSATEGRWFW 812
>gi|149375720|ref|ZP_01893489.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
gi|149360122|gb|EDM48577.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
Length = 441
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 51 KGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKD 101
+G ++VLV +D G+D+++ + + Y+HR G RAG++GH +L+ D
Sbjct: 290 QGEVRVLVATDIAARGLDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSAD 349
Query: 102 EDKLLYMFQVKRFKKLLQQADHDSCPVHSIP 132
E K+L + K+L +++ P +++P
Sbjct: 350 EGKMLAGIERLIKKQLPRKSVEGFEPTNNLP 380
>gi|58039465|ref|YP_191429.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
gi|58001879|gb|AAW60773.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
Length = 432
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 18/136 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L AFR +G +QVLV +D G+DV+ ++ ++Y+HR G RAG++G
Sbjct: 291 RALNAFR-EGDVQVLVATDIAARGIDVDTVTHVINHDLPSLPESYVHRIGRTGRAGRSGF 349
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQAD-HDSCPVHSIPSSSIESLRPIYKS---EYVE 149
TL D ++ ++ V+R ++ + D HDS HS + + P+ + V+
Sbjct: 350 AITLC--DAEQRAWLHAVER--EIGRTLDVHDSHEWHSEEARNSTMRPPVLGGGPVKQVK 405
Query: 150 SQANRKRKIGFKLSRM 165
Q R+R++ + +M
Sbjct: 406 PQKVRERRVWTEEEKM 421
>gi|23308803|ref|NP_599999.2| helicase [Corynebacterium glutamicum ATCC 13032]
gi|62389660|ref|YP_225062.1| ATP-dependent RNA helicase [Corynebacterium glutamicum ATCC 13032]
gi|21323537|dbj|BAB98164.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum
ATCC 13032]
gi|41324995|emb|CAF19476.1| PROBABLE ATP-DEPENDENT RNA HELICASE PROTEIN [Corynebacterium
glutamicum ATCC 13032]
gi|385142918|emb|CCH23957.1| putative helicase [Corynebacterium glutamicum K051]
Length = 424
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K+L AFR G + +LV +D G+DV+ ++ TY+HR G RAG NG
Sbjct: 295 KSLNAFR-TGKIDILVATDVAARGIDVDDVTHVINYQTPDDPMTYVHRIGRTGRAGHNGT 353
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 354 AVTLVGYDE 362
>gi|404451050|ref|ZP_11016024.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
gi|403763343|gb|EJZ24311.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
Length = 377
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 41/145 (28%)
Query: 21 PLLRNLGGE----KFIVFASSVANS--------------------------PKTLKAFRG 50
PLLR+L E + +VFASS+ + + LK F+G
Sbjct: 233 PLLRHLIQEGDWKQVLVFASSIRTADNLTAKLNKNGIQAMAFHGDKSQGARTEALKQFKG 292
Query: 51 KGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKD 101
G ++VLV +D G+D++ ++ K YIHR G RAG +G +L+ +
Sbjct: 293 -GTLRVLVATDLAARGIDIQFLPHVVNFELPRSPKDYIHRIGRTGRAGASGEAISLI-TE 350
Query: 102 EDKLLYMFQVKRFKKLLQQADHDSC 126
ED+ + K+ K+ ++ D D+
Sbjct: 351 EDRHHWKVIQKKMKRWVELVDTDNL 375
>gi|387895769|ref|YP_006326066.1| ATP-dependent RNA helicase [Pseudomonas fluorescens A506]
gi|387161796|gb|AFJ56995.1| ATP-dependent RNA helicase, putative [Pseudomonas fluorescens A506]
Length = 444
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +Q+LV +D G+D+E + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKAS-EVQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE +L ++ + L ++ + D P H +P +
Sbjct: 340 NTGEAISLVCADEVNMLSAIEMLTRQTLTRKMEPDFEPEHRVPDTD 385
>gi|183229616|ref|XP_657423.2| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
gi|169803121|gb|EAL52039.2| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449703658|gb|EMD44066.1| ATPdependent RNA helicase DDX55, putative [Entamoeba histolytica
KU27]
Length = 499
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
N K +K F +L+C+D + GMD + YI KTYIHR G AR G
Sbjct: 295 VNRDKVIKKFEESCE-AILICTDVLARGMDFDNINYIIQYDPPQDPKTYIHRVGRTARMG 353
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFK 115
GH L E + + + K K
Sbjct: 354 SIGHSLIFLGPLEKSFILLMEKKNVK 379
>gi|145294934|ref|YP_001137755.1| hypothetical protein cgR_0880 [Corynebacterium glutamicum R]
gi|417971974|ref|ZP_12612890.1| hypothetical protein CgS9114_13156 [Corynebacterium glutamicum
S9114]
gi|140844854|dbj|BAF53853.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344043728|gb|EGV39416.1| hypothetical protein CgS9114_13156 [Corynebacterium glutamicum
S9114]
Length = 424
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K+L AFR G + +LV +D G+DV+ ++ TY+HR G RAG NG
Sbjct: 295 KSLNAFR-TGKIDILVATDVAARGIDVDDVTHVINYQTPDDPMTYVHRIGRTGRAGHNGT 353
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 354 AVTLVGYDE 362
>gi|37912838|gb|AAR05178.1| putative ATP-dependent RNA helicase [uncultured marine
proteobacterium ANT8C10]
Length = 635
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGH 93
K L+ F+GK ++VLV +D G+D+ + Y YIHR G RAGQ G
Sbjct: 284 KALREFKGK-FVRVLVATDVAARGIDISNLPFVVNFDMPTYPNDYIHRIGRTGRAGQEGT 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPS 133
+L+ DE K L + K + Q H++ + PS
Sbjct: 343 AISLMSSDEHKFLRGIE-GLLKIKIDQTSHEAFKPNDKPS 381
>gi|410446614|ref|ZP_11300717.1| putative ATP-dependent RNA helicase RhlE [SAR86 cluster bacterium
SAR86E]
gi|409980286|gb|EKO37037.1| putative ATP-dependent RNA helicase RhlE [SAR86 cluster bacterium
SAR86E]
Length = 436
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 10/130 (7%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+ F+ K +QVLV +D G+D+ Y+ YIHR G RAG+ G
Sbjct: 284 RALREFKEKD-VQVLVATDVAARGIDISNLPYVVNFDMPTYPNDYIHRIGRTGRAGKQGT 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQAN 153
+ L +E K L + K+ Q+ + P+ S KS Y + QA
Sbjct: 343 AISFLSIEEHKFLRGIEELIGAKIQQKIEEGFRPLEKKDSEKRSDNFKSKKSGYKKRQAT 402
Query: 154 RKRKIGFKLS 163
+K K FK S
Sbjct: 403 KKVKTNFKKS 412
>gi|384099148|ref|ZP_10000248.1| ATP-dependent RNA helicase deaD-like protein [Imtechella
halotolerans K1]
gi|383833572|gb|EID73023.1| ATP-dependent RNA helicase deaD-like protein [Imtechella
halotolerans K1]
Length = 598
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAGQNGHCF 95
+KAFR + +Q+LV +D G+DV+ + I+TY HR+G RAG++G
Sbjct: 285 MKAFRNR-QIQMLVATDVAARGIDVDDVTHVINYQLPDEIETYTHRSGRTGRAGKSGISM 343
Query: 96 TLLPKDE 102
+LPK E
Sbjct: 344 VILPKSE 350
>gi|418246652|ref|ZP_12873046.1| hypothetical protein KIQ_14222 [Corynebacterium glutamicum ATCC
14067]
gi|354509267|gb|EHE82202.1| hypothetical protein KIQ_14222 [Corynebacterium glutamicum ATCC
14067]
Length = 424
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K+L AFR G + +LV +D G+DV+ ++ TY+HR G RAG NG
Sbjct: 295 KSLNAFR-TGKIDILVATDVAARGIDVDDVTHVINYQTPDDPMTYVHRIGRTGRAGHNGT 353
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 354 AVTLVGYDE 362
>gi|300779595|ref|ZP_07089451.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
33030]
gi|300533705|gb|EFK54764.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
33030]
Length = 440
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
++L+AFR KG +++LV +D G+DV+ ++ TY+HR G RAG+ G
Sbjct: 293 RSLEAFR-KGDVEILVATDVAARGIDVDDVTHVINYQTPDDPMTYVHRIGRTGRAGRTGT 351
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 352 AVTLVGFDE 360
>gi|269102593|ref|ZP_06155290.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
CIP 102761]
gi|268162491|gb|EEZ40987.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
CIP 102761]
Length = 402
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 12/113 (10%)
Query: 52 GHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDE 102
G ++ LV +D G+D+E+ Y+ + Y+HR G RAG GH TL+ DE
Sbjct: 281 GKVRALVATDVAARGIDIEQLEYVVNFDMPFKPEDYVHRIGRTGRAGSAGHAITLMSLDE 340
Query: 103 DKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQANRK 155
+ +L + +L QQ P P +++E+ P +E ++A K
Sbjct: 341 EWILKGIEELLDTRLPQQWLEGFEP---DPLATVETTMPKRSAEKRRAKAKAK 390
>gi|149188012|ref|ZP_01866307.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
shilonii AK1]
gi|148838000|gb|EDL54942.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
shilonii AK1]
Length = 406
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 17/122 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL+AF+ +G +QVL+ +D + G+ V+ + Y+HR G ARAG+ G
Sbjct: 278 RTLQAFK-QGEIQVLIATDILARGIHVDNLPVVINYELPSDPSVYVHRVGRTARAGKTGQ 336
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQAN 153
+L+ E + L + + L+ + D PV PS+ ES RP + QAN
Sbjct: 337 ALSLVCHGETEYLEAIRQLTSRSLVLEELAD-FPVTDKPSTG-ESKRP-----KRDKQAN 389
Query: 154 RK 155
R+
Sbjct: 390 RR 391
>gi|389612037|dbj|BAM19549.1| Dead box protein 73D, partial [Papilio xuthus]
Length = 248
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 80/204 (39%), Gaps = 54/204 (26%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSV------------------------------ 38
+C ++ KP+ L LL +K + F +S
Sbjct: 44 VCNAEEKPLILFHLLVEKKWDKVLCFTNSAQSVHRLAVLLNEWGKDQCLKVAELSSALDR 103
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAG 89
A+ K L+ F+ + + V++ +DA+ G+D+ Y IKTY+HR G RAG
Sbjct: 104 ASREKVLEKFK-QSEVNVIISTDALARGIDIPDCNYVVSYDPPRNIKTYVHRVGRTGRAG 162
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS---- 145
+ G T+L + Q+ FK+ +Q + + S L Y+S
Sbjct: 163 RIGRAVTILNHN--------QLNMFKEQIQSSGKSEINQLEVSEESYSHLLQSYESAIQE 214
Query: 146 --EYVESQANRKRKIGFKLSRMVK 167
+ + ++ N K K +L R +K
Sbjct: 215 TKQIIHTEINNKVKKSIELKRGMK 238
>gi|384919775|ref|ZP_10019812.1| DEAD/DEAH box helicase-like protein [Citreicella sp. 357]
gi|384466377|gb|EIE50885.1| DEAD/DEAH box helicase-like protein [Citreicella sp. 357]
Length = 436
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ +KAFR G + VLV +D G+D+ AY+ Y+HR G ARAG+ G
Sbjct: 286 RAIKAFR-DGTITVLVATDVAARGIDIPGVAYVVNFDLPEVPDNYVHRIGRTARAGREGE 344
Query: 94 CFTLLPKDEDKLLYMFQ 110
DE LL Q
Sbjct: 345 AIAFCAPDEGDLLRQIQ 361
>gi|332030497|gb|EGI70185.1| Putative ATP-dependent RNA helicase DDX47 [Acromyrmex echinatior]
Length = 448
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K +YL+ +L L G F++F + N+ +T R G H Q
Sbjct: 242 KFKDVYLVHILNELAGNSFMIFCGTCNNTVRTALLLRNLGFTAVPLHGQMTQNKRIAALT 301
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+L+ +D + G+D+ + K YIHR G ARAG++G T +
Sbjct: 302 KFKAKNRSILISTDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFV 361
Query: 99 PK 100
+
Sbjct: 362 TQ 363
>gi|78776809|ref|YP_393124.1| DEAD/DEAH box helicase [Sulfurimonas denitrificans DSM 1251]
gi|78497349|gb|ABB43889.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
1251]
Length = 432
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 15/89 (16%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
AN KTL F+ +G ++VLV +D + G+D+E ++ + Y+HR G RAG
Sbjct: 279 ANRLKTLNEFK-EGKIKVLVATDIASRGLDIEELPFVINYELPSIPEDYVHRVGRTGRAG 337
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLL 118
++G +L+ + F +K +KL+
Sbjct: 338 RDGMAISLI-----DIYEKFDIKDIEKLI 361
>gi|449017342|dbj|BAM80744.1| ATP-dependent RNA helicase [Cyanidioschyzon merolae strain 10D]
Length = 592
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 10/68 (14%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
TL+ F+ +G Q L+CSD M GMD+ A+++ TY+HR G ARAG+ G
Sbjct: 408 TLERFQ-RGTTQWLICSDVMARGMDIAEASHVVNFDVPAHPTTYLHRVGRVARAGRPGTA 466
Query: 95 FTLLPKDE 102
T L +++
Sbjct: 467 LTFLLRNQ 474
>gi|427429668|ref|ZP_18919655.1| ATP-dependent RNA helicase RhlE [Caenispirillum salinarum AK4]
gi|425879905|gb|EKV28606.1| ATP-dependent RNA helicase RhlE [Caenispirillum salinarum AK4]
Length = 469
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 16/105 (15%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCF 95
LK FR KG ++ LV +D G+D++ ++ ++Y+HR G ARAG +G
Sbjct: 288 LKDFR-KGKVKALVATDIAARGIDIDGLTHVVNFELPNEPESYVHRIGRTARAGASGMAI 346
Query: 96 TLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLR 140
+L D D+L Y+ ++R + +A +D H + +E++R
Sbjct: 347 SLC--DTDELFYLRDIERAIRQTVEAHND----HDWHAPDVEAMR 385
>gi|229592757|ref|YP_002874876.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
gi|229364623|emb|CAY52530.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
Length = 444
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 53 HMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDED 103
+Q+LV +D G+D+E + + YIHR G RAG G +L+ DE
Sbjct: 294 EVQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEV 353
Query: 104 KLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L ++ + L ++ + D P H +P +
Sbjct: 354 NMLSAIEMLTRQTLTRKMEPDFEPEHRVPDTD 385
>gi|410860280|ref|YP_006975514.1| ATP-dependent RNA helicase [Alteromonas macleodii AltDE1]
gi|410817542|gb|AFV84159.1| ATP-dependent RNA helicase [Alteromonas macleodii AltDE1]
Length = 586
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 20/111 (18%)
Query: 51 KGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKD 101
+G + +LV +D + G+DVER +++ ++Y+HR G RAG+ G +
Sbjct: 294 QGQIDILVATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHR 353
Query: 102 EDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQA 152
E +LL+ + K +Q P+ ++P SI + S + +S A
Sbjct: 354 EKRLLFSIE-----KTTKQ------PIEAMPIPSISEINETRLSRFKQSVA 393
>gi|410671946|ref|YP_006924317.1| DEAD/DEAH box helicase-like protein [Methanolobus psychrophilus
R15]
gi|409171074|gb|AFV24949.1| DEAD/DEAH box helicase-like protein [Methanolobus psychrophilus
R15]
Length = 408
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 22 LLRNLGGEKFIVFASSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI------ 75
L +N G I S A+ + +++FR G +QVLV +D G+D+E +++
Sbjct: 264 LNKNRVGADAIHGNKSQAHRTRVMESFRA-GELQVLVATDIAARGIDIEDISHVINYDLP 322
Query: 76 ---KTYIHRAGPRARAGQNGHCFTLLPKDEDKLL 106
++Y+HR G ARAG G ++ DE L
Sbjct: 323 NEPESYVHRIGRTARAGAEGTAYSFCAADERSFL 356
>gi|452877593|ref|ZP_21954868.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa VRFPA01]
gi|452185681|gb|EME12699.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa VRFPA01]
Length = 447
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+ F+ G + +LV +D G+D+E + + Y+HR G RAG G
Sbjct: 285 RALQRFKA-GEVDLLVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGATGQ 343
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L+ DE +LL + + L ++ + D P H +P ++
Sbjct: 344 ALSLVCADEVELLAAIETLIGQTLQRREEPDFEPEHRVPQTA 385
>gi|152986565|ref|YP_001346544.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
gi|150961723|gb|ABR83748.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
Length = 447
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+ F+ G + +LV +D G+D+E + + Y+HR G RAG G
Sbjct: 285 RALQRFKA-GEVDLLVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGATGQ 343
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L+ DE +LL + + L ++ + D P H +P ++
Sbjct: 344 ALSLVCADEVELLAAIETLIGQTLQRREEPDFEPEHRVPQTA 385
>gi|91088115|ref|XP_969791.1| PREDICTED: similar to GA21647-PA [Tribolium castaneum]
gi|270012107|gb|EFA08555.1| hypothetical protein TcasGA2_TC006210 [Tribolium castaneum]
Length = 451
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K +YL+ +L + G F++F S+ N+ +T R G H Q
Sbjct: 243 KFKDVYLVHILNEMAGNSFMIFCSTCNNTIRTALLLRNLGLTAVPLHGQMSQNKRLAALT 302
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+L+ +D + G+D+ + K YIHR G ARAG++G T +
Sbjct: 303 KFKAKNRSILISTDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFV 362
Query: 99 PK 100
+
Sbjct: 363 TQ 364
>gi|429770137|ref|ZP_19302216.1| putative ATP-dependent RNA helicase RhlE [Brevundimonas diminuta
470-4]
gi|429185399|gb|EKY26379.1| putative ATP-dependent RNA helicase RhlE [Brevundimonas diminuta
470-4]
Length = 491
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 10/73 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AF+ G ++VLV +D G+DV++ ++ + Y+HR G ARAG++G
Sbjct: 280 RALEAFK-NGKLRVLVATDIAARGIDVDKVTHVVNFELPYVPEAYVHRIGRTARAGKDGT 338
Query: 94 CFTLLPKDEDKLL 106
+ + DE KLL
Sbjct: 339 AISFVAGDEMKLL 351
>gi|334348319|ref|XP_001371236.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Monodelphis domestica]
Length = 459
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F+VF S+ N+ +T R G H Q
Sbjct: 248 SKFKDSYLVYILNELAGNSFMVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSL 307
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 308 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITF 367
Query: 98 LPK 100
+ +
Sbjct: 368 VTQ 370
>gi|440638773|gb|ELR08692.1| ATP-dependent rRNA helicase rrp3 [Geomyces destructans 20631-21]
Length = 485
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 36/119 (30%)
Query: 15 KPIYLIPLLRNLGGEKFIVFASSVANSPK--------------------------TLKAF 48
K YLI LL + G+ IVF +V + + L F
Sbjct: 286 KDTYLIYLLNDFAGQSAIVFTRTVNETQRLAILLRTLGFGAIPLHGQLSQSARLGALNKF 345
Query: 49 RGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
R G ++LV +D G+D+ + KTYIHR G ARAG++GH +++
Sbjct: 346 RA-GSREILVATDVAARGLDIPSVDVVLNYDLPPDSKTYIHRVGRTARAGKSGHAISIV 403
>gi|83310484|ref|YP_420748.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
gi|82945325|dbj|BAE50189.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum
AMB-1]
Length = 583
Score = 48.9 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 10/73 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL+ F+ KG +++VCSD G+D+ +++ + Y+HR G RAG GH
Sbjct: 320 ETLEKFK-KGEARLMVCSDVAARGIDISAVSHVFNFDVPIHAEDYVHRIGRTGRAGMEGH 378
Query: 94 CFTLLPKDEDKLL 106
FT+ D+ + +
Sbjct: 379 AFTIASPDDGRFV 391
>gi|260433348|ref|ZP_05787319.1| dead/deah box helicase [Silicibacter lacuscaerulensis ITI-1157]
gi|260417176|gb|EEX10435.1| dead/deah box helicase [Silicibacter lacuscaerulensis ITI-1157]
Length = 416
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ +KAFR G + VLV +D G+D+ AY+ Y+HR G ARAG+ G
Sbjct: 286 RAIKAFRA-GEITVLVATDVAARGIDIPGVAYVINYDLPEVPDNYVHRIGRTARAGREGE 344
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHS---IPSSSIESLRPIYKSEYVES 150
DE LL Q+++ K+ + P S P + R K +
Sbjct: 345 AIAFCAPDEFDLLR--QIQKLMKIQIPVASGTAPEASETTKPGGHQRNRRRGPKPQGAPG 402
Query: 151 QANRKRK 157
ANR+R+
Sbjct: 403 AANRRRR 409
>gi|410028622|ref|ZP_11278458.1| DNA/RNA helicase [Marinilabilia sp. AK2]
Length = 392
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 41/145 (28%)
Query: 21 PLLRNL----GGEKFIVFASSVANS--------------------------PKTLKAFRG 50
PLLR+L ++ +VFASS+ + + LK F+
Sbjct: 248 PLLRHLIKEGNWQQVLVFASSIRTADNLTTKLNKHGIQAMALHGDKSQGARTEALKQFKA 307
Query: 51 KGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKD 101
G ++VLV +D G+D+E ++ K YIHR G RAG G +L+ +
Sbjct: 308 -GKLRVLVATDLAARGIDIEALPHVVNFELPRSPKDYIHRIGRTGRAGIEGEAISLI-TE 365
Query: 102 EDKLLYMFQVKRFKKLLQQADHDSC 126
ED+ + K+ K+ ++ D D+
Sbjct: 366 EDRHHWKVIQKKMKRWVELVDTDNL 390
>gi|239606948|gb|EEQ83935.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis ER-3]
gi|327350595|gb|EGE79452.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis ATCC
18188]
Length = 482
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K +YL+ LL G+ IVF +V + + R G H Q
Sbjct: 281 KYKDLYLVYLLNEYAGQSAIVFTRTVNETQRLAILLRALGFGAIPLHGQLSQSSRLGALS 340
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+LV +D G+D+ + KTYIHR G ARAG++GH F ++
Sbjct: 341 KFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFNIV 400
Query: 99 PK 100
+
Sbjct: 401 TQ 402
>gi|152013488|sp|A2QA23.1|DBP6_ASPNC RecName: Full=ATP-dependent RNA helicase dbp6
gi|134055529|emb|CAK37175.1| unnamed protein product [Aspergillus niger]
Length = 593
Score = 48.9 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 10/82 (12%)
Query: 32 IVFASSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVER---------AAYIKTYIHRA 82
I+ ++ + S KTL A+R +G + V++ +D + G+D+ A I TY+HR
Sbjct: 452 IIKSNKSSASRKTLTAYR-RGKISVIIATDRASRGLDLRSLTHVVNYDVPASITTYVHRV 510
Query: 83 GPRARAGQNGHCFTLLPKDEDK 104
G ARAGQ G +TL+ E K
Sbjct: 511 GRTARAGQKGSAWTLVAHREGK 532
>gi|343084223|ref|YP_004773518.1| DEAD/DEAH box helicase [Cyclobacterium marinum DSM 745]
gi|342352757|gb|AEL25287.1| DEAD/DEAH box helicase domain protein [Cyclobacterium marinum DSM
745]
Length = 410
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 23/130 (17%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ +G ++VLV +D G+D+++ Y+ +TY+HR G RAG++G
Sbjct: 286 KVLTQFK-EGAIRVLVATDIAARGIDIDKLQYVINYDVPEDPETYVHRIGRSGRAGESGT 344
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQ----ADHDSCPVHSIPSSSIESLRPIYKSEYVE 149
+L +E+ VK +KL+ Q D + P P +++E + K + +
Sbjct: 345 AISLCEPEENAY-----VKLIEKLISQKISVVDKNPFPQTDKPMTALEK-KEFNKEKQRK 398
Query: 150 SQ---ANRKR 156
Q ANRKR
Sbjct: 399 KQAFFANRKR 408
>gi|432107717|gb|ELK32877.1| Putative ATP-dependent RNA helicase DDX47 [Myotis davidii]
Length = 455
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 247 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 306
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 307 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITF 366
Query: 98 LPK 100
+ +
Sbjct: 367 VTQ 369
>gi|393722521|ref|ZP_10342448.1| ATP-dependent RNA helicase [Sphingomonas sp. PAMC 26605]
Length = 426
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L AFR G +QVLV +D G+DV+ ++ ++Y+HR G RAG++G
Sbjct: 287 RALDAFRA-GDVQVLVATDIAARGIDVDTVTHVFNHDLPSLPESYVHRIGRTGRAGRSGF 345
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHD-SCPV--HSIPSSSIESLRPIYKSEYVES 150
TL ++ L+ + + + L + DH C V HS + + P+ + + V+
Sbjct: 346 AITLCDAEQRAWLHDVEREIGRPLTVEVDHPWHCEVARHSTKRAPVLGGGPVKQVKPVQV 405
Query: 151 QANRKRKI 158
R+RK+
Sbjct: 406 ---RERKV 410
>gi|336370797|gb|EGN99137.1| hypothetical protein SERLA73DRAFT_54272 [Serpula lacrymans var.
lacrymans S7.3]
Length = 514
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 10/75 (13%)
Query: 37 SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRAR 87
SV L+ F+ + +Q+LVCSD ++ GMD+ +++ + Y+HR G AR
Sbjct: 428 SVGERRGILEKFKAE-EIQILVCSDLISRGMDMSHVSHVVSYDVPVDMRKYVHRVGRTAR 486
Query: 88 AGQNGHCFTLLPKDE 102
AG+ G +TL+ + E
Sbjct: 487 AGREGDAWTLVEEQE 501
>gi|452966944|gb|EME71951.1| superfamily II DNA/RNA helicase [Magnetospirillum sp. SO-1]
Length = 572
Score = 48.9 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 10/73 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL+ F+ KG +++VCSD G+D+ +++ + Y+HR G RAG GH
Sbjct: 300 ETLEKFK-KGEARLMVCSDVAARGIDISAVSHVFNFDVPIHAEDYVHRIGRTGRAGMEGH 358
Query: 94 CFTLLPKDEDKLL 106
FT+ D+ + +
Sbjct: 359 AFTIASPDDGRFV 371
>gi|392576681|gb|EIW69811.1| hypothetical protein TREMEDRAFT_38519 [Tremella mesenterica DSM
1558]
Length = 792
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 29/130 (22%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGH 93
+ L+A R G +QVLV +D G+DV + + I+ Y+HR G RAG+ G
Sbjct: 635 QALQALR-DGEVQVLVATDVAGRGIDVPDVSLVINWQMSDTIEKYVHRIGRTGRAGKKGL 693
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRP-IYKSEYVESQA 152
T L D++++ MF++K I S + ++ P + + E + +
Sbjct: 694 AITFLTNDDEEV--MFELK----------------QEISKSPVSTMNPELARHEAAKQKI 735
Query: 153 NRKRKIGFKL 162
R+ K+G KL
Sbjct: 736 TREMKVGQKL 745
>gi|372487003|ref|YP_005026568.1| DNA/RNA helicase [Dechlorosoma suillum PS]
gi|359353556|gb|AEV24727.1| DNA/RNA helicase, superfamily II [Dechlorosoma suillum PS]
Length = 443
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L++F+ G ++VLV +D + G+D++ + + Y+HR G ARAG +G
Sbjct: 285 RALESFKA-GQVRVLVATDVASRGLDIDDLPRVVNFDLPIVPEDYVHRIGRTARAGASGE 343
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L+ DE LL +V + L + H P H +P +
Sbjct: 344 AVSLVCADEVNLLGAIEVLIGQPLSRIEQHGFEPDHRVPETG 385
>gi|326911793|ref|XP_003202240.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Meleagris gallopavo]
Length = 447
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 34/129 (26%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F+VF S+ N+ +T R G H Q
Sbjct: 242 SKFKDSYLVYILNELAGNSFMVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSL 301
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 302 NKFKAKARSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITF 361
Query: 98 LPKDEDKLL 106
+ + + +L
Sbjct: 362 VTQYDVELF 370
>gi|410646395|ref|ZP_11356846.1| cold-shock DEAD box protein A homolog [Glaciecola agarilytica NO2]
gi|410134001|dbj|GAC05245.1| cold-shock DEAD box protein A homolog [Glaciecola agarilytica NO2]
Length = 436
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G ++ LV +D G+D+ + + + Y+HR G RAG +G
Sbjct: 284 KALAEFK-NGKVRALVATDIAARGLDISQLPQVVNYDLPNVAEDYVHRIGRTGRAGASGQ 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLL--QQADHDSCPVHSIPSSSIESLRPI 142
+L+ DE LL ++RF K + ++ P+H +P S +++ RPI
Sbjct: 343 AISLVTADEFSLLA--DIERFTKQIIPRKGIEGFAPLHDLPESRLDN-RPI 390
>gi|294056345|ref|YP_003550003.1| DEAD/DEAH box helicase [Coraliomargarita akajimensis DSM 45221]
gi|293615678|gb|ADE55833.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
DSM 45221]
Length = 465
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 18/137 (13%)
Query: 22 LLRNLGGEKFIVFA----SSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI-- 75
L + L GE A S + KTL+ +R +G + +LV +D G+DV+ +
Sbjct: 267 LAKKLNGEGLKADAIHGNKSQSAREKTLERYR-RGEIDILVATDVAARGIDVKNITLVIN 325
Query: 76 -------KTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPV 128
Y+HR G ARAG +GH + ++E LL Q++R K D +S P
Sbjct: 326 FDLPMEADAYVHRIGRTARAGASGHAVSFCSEEEVALLR--QIERLIKKTVPVD-ESHPF 382
Query: 129 HSIPSSSIE-SLRPIYK 144
H + + S RP+ K
Sbjct: 383 HDADAMELHLSRRPVKK 399
>gi|145342120|ref|XP_001416141.1| DEAD-box helicase, probable [Ostreococcus lucimarinus CCE9901]
gi|144576366|gb|ABO94434.1| DEAD-box helicase, probable [Ostreococcus lucimarinus CCE9901]
Length = 446
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 39/137 (28%)
Query: 19 LIPLLRNLGGEKFIVFASSV-------------ANSP--------------KTLKAF-RG 50
L+ LL GEK IVF++SV N P TL+ F R
Sbjct: 302 LVSLLEFFKGEKVIVFSASVYRARHILQRLNKLENLPCFEYSSDANLRRRASTLQNFQRC 361
Query: 51 KGHMQVLVCSDAMTSGMDVERAA---------YIKTYIHRAGPRARAGQNGHCFTLLPKD 101
+G VLV SDA G+ ++ + + +TY+HRAG ARAG+ G C T+
Sbjct: 362 QGG--VLVASDAAARGLHIDAVSAVISFDAPEHFETYLHRAGRTARAGKTGKCITICSTA 419
Query: 102 EDKLLYMFQVKRFKKLL 118
+ ++ +V+R +L
Sbjct: 420 REAQTFIKRVQRHVPIL 436
>gi|386867208|ref|YP_006280202.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp.
animalis ATCC 25527]
gi|385701291|gb|AFI63239.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp.
animalis ATCC 25527]
Length = 646
Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 24/141 (17%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AF G + VLV +D G+DV + K++ HR+G ARAGQ+G
Sbjct: 320 RNLQAFE-SGQVNVLVATDVAARGIDVSNVGLVVQVEPPEDPKSFTHRSGRTARAGQSGD 378
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSS-SIESL-----RPIYKSEY 147
TL+ D Q ++ + L ++ D PV P S ++ L P++ E
Sbjct: 379 VVTLMTPD--------QKRKIRHLFKEVDIKLKPVEVTPESPQVQELVGQKADPVHGWEL 430
Query: 148 VESQANRKRKIGFKLSRMVKG 168
E + ++ G + SR +G
Sbjct: 431 PELERKPRKSNGGRKSRRDRG 451
>gi|359426039|ref|ZP_09217126.1| putative ATP-dependent RNA helicase [Gordonia amarae NBRC 15530]
gi|358238516|dbj|GAB06708.1| putative ATP-dependent RNA helicase [Gordonia amarae NBRC 15530]
Length = 556
Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K LK FR +G + VLV +D G+D++ ++ KTY+HR G RAG+ G
Sbjct: 339 KALKKFR-EGKIDVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGRTGI 397
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVH-----SIPSSSIESLRPIYKSEYV 148
TL+ DE + + + + S H ++P S+ + P ++E
Sbjct: 398 AITLVDWDELHRWELINSALGIGVPEPVETYSTSEHLRTDLNVPESATGRIAPPPRTESA 457
Query: 149 ESQANRKRKI 158
E + R+R +
Sbjct: 458 EPRQRRERPV 467
>gi|146092052|ref|XP_001470194.1| putative DEAD box RNA helicase [Leishmania infantum JPCM5]
gi|398018159|ref|XP_003862265.1| DEAD box RNA helicase, putative [Leishmania donovani]
gi|134084988|emb|CAM69387.1| putative DEAD box RNA helicase [Leishmania infantum JPCM5]
gi|322500494|emb|CBZ35571.1| DEAD box RNA helicase, putative [Leishmania donovani]
Length = 389
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 14/98 (14%)
Query: 22 LLRNLGGEKFIVFASS----VANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI-- 75
L + + EKF V A A + ++ FR GH +VL+ +D G+DVER + +
Sbjct: 271 LAKKMTREKFAVTAMHGDMPQAERDEIMRQFR-NGHSRVLITTDLWARGIDVERVSLVLS 329
Query: 76 -------KTYIHRAGPRARAGQNGHCFTLLPKDEDKLL 106
+ YIHR G R G+ G T + DE +LL
Sbjct: 330 YDLPLAREQYIHRIGRTGRMGRTGLAITFVRHDELRLL 367
>gi|424881770|ref|ZP_18305402.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392518133|gb|EIW42865.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 520
Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 61/110 (55%), Gaps = 18/110 (16%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
TL++FR G++Q+LV SD G+D+ +++ + Y+HR G RAG++G
Sbjct: 294 TLQSFR-DGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAA 352
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLL-QQADHDSCPVHSIPSS--SIESLRP 141
FTL+ K + K V +KL+ ++ + S ++S+P + S E+ RP
Sbjct: 353 FTLVTKRDTKF-----VDAIEKLIGEKVEWLSGDLNSLPPAEESRETERP 397
>gi|127511538|ref|YP_001092735.1| DEAD/DEAH box helicase [Shewanella loihica PV-4]
gi|126636833|gb|ABO22476.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
Length = 491
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 12/108 (11%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G ++VLV +D G+D+++ + + Y+HR G RAG +G
Sbjct: 284 KALANFK-SGDVRVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGK 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSC-PVHSIPSSSIESLR 140
+L+ +E KLL + + KLL +A+ + P H++P +++ R
Sbjct: 343 AVSLVSDEEAKLLADIE-RLIGKLLPRAEVEGFEPTHTLPETNLTPKR 389
>gi|423693711|ref|ZP_17668231.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SS101]
gi|387999548|gb|EIK60877.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SS101]
Length = 444
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +Q+LV +D G+D+E + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKAS-DVQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE +L ++ + L ++ + D P H +P +
Sbjct: 340 NTGEAISLVCADEVNMLSAIEMLTRQTLTRKMEPDFEPEHRVPDTD 385
>gi|1749726|dbj|BAA13920.1| unnamed protein product [Schizosaccharomyces pombe]
Length = 490
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 33 VFASSVA-NSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRA 82
+F SS++ + K + ++ G + +LVCSD M G+ + ++Y+HR
Sbjct: 352 LFTSSLSRDERKKIISWFATGDLNLLVCSDLMARGIHFSNTQNVINYDPPFSVRSYVHRI 411
Query: 83 GPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLL 118
GP ARAG+ G +TL+ E VK+ KK L
Sbjct: 412 GPTARAGREGFAWTLVQSHEGHHFSKL-VKQLKKTL 446
>gi|281201805|gb|EFA76013.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 701
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 24/117 (20%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ LK F+ +++LV +D + G+D+ER + +TY HR G R G G
Sbjct: 359 EELKDFK----LRILVSTDLIARGIDIERVNLVVNIDMPRDYETYFHRIGRTGRFGTYGV 414
Query: 94 CFTLLPKDEDK---LLYMFQVKRFKKLLQQADHDSCPVH--------SIPSSSIESL 139
+ + KD ++ L+ +V+ +LL++ D+D P H S S S+ESL
Sbjct: 415 SVSFISKDSEQDRNFLHELRVRYNVELLERKDNDEIPEHFYTYQLSNSKESESLESL 471
>gi|170727862|ref|YP_001761888.1| DEAD/DEAH box helicase [Shewanella woodyi ATCC 51908]
gi|169813209|gb|ACA87793.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
51908]
Length = 413
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 65/148 (43%), Gaps = 17/148 (11%)
Query: 28 GEKFIVFASSVANS--PKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------K 76
G K + F ++ S K L+ F+ G +QVLV +D G+DVE + +
Sbjct: 271 GVKALAFHGDLSQSVREKVLQEFKS-GELQVLVATDVAARGLDVESLEVVVNYELPFVAE 329
Query: 77 TYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSI 136
Y+HR G RAG +G TL +D+ LL + +L QQ P + S+
Sbjct: 330 DYVHRIGRTGRAGNSGLAITLYCEDDALLLEEVEAVLDTRLPQQWLEGFEP---DLTKSV 386
Query: 137 ESLRPIYKSEYVESQANRKRKIGFKLSR 164
R KS + Q R+R G K SR
Sbjct: 387 SVTRKNSKS--AQKQRARRRATGSKRSR 412
>gi|410079649|ref|XP_003957405.1| hypothetical protein KAFR_0E01160 [Kazachstania africana CBS 2517]
gi|372463991|emb|CCF58270.1| hypothetical protein KAFR_0E01160 [Kazachstania africana CBS 2517]
Length = 405
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K + FR GH +VL+ +D G+DV++ + + + YIHR G R G+ G
Sbjct: 312 KIMNDFRS-GHSRVLISTDVWARGIDVQQVSLVINYDLPENMENYIHRIGRSGRFGRKGV 370
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKL 117
+ KD+ KLL Q++RF ++
Sbjct: 371 AINFVTKDDVKLLK--QIERFYRI 392
>gi|401425020|ref|XP_003876995.1| putative DEAD box RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493239|emb|CBZ28524.1| putative DEAD box RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 389
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 14/98 (14%)
Query: 22 LLRNLGGEKFIVFASS----VANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI-- 75
L + + EKF V A A + ++ FR GH +VL+ +D G+DVER + +
Sbjct: 271 LAKKMTREKFAVTAMHGDMPQAERDEIMRQFR-NGHSRVLITTDLWARGIDVERVSLVLS 329
Query: 76 -------KTYIHRAGPRARAGQNGHCFTLLPKDEDKLL 106
+ YIHR G R G+ G T + DE +LL
Sbjct: 330 YDLPLSREQYIHRIGRTGRMGRTGLAITFVRHDELRLL 367
>gi|297192239|ref|ZP_06909637.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
25486]
gi|297151271|gb|EFH31061.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
25486]
Length = 539
Score = 48.5 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG +G
Sbjct: 318 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGASGT 376
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 377 AVTLVDWDD 385
>gi|357022809|ref|ZP_09085031.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
thermoresistibile ATCC 19527]
gi|356477430|gb|EHI10576.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
thermoresistibile ATCC 19527]
Length = 481
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K LKAFR G + VLV +D G+D+E ++ + Y+HR G RAG+ G
Sbjct: 280 KALKAFRA-GEIDVLVATDVAARGIDIEDVTHVINYQIPEDEQAYVHRIGRTGRAGRTGV 338
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 339 AITLVDWDE 347
>gi|406598434|ref|YP_006749564.1| ATP-dependent RNA helicase DbpA [Alteromonas macleodii ATCC 27126]
gi|406375755|gb|AFS39010.1| ATP-dependent RNA helicase DbpA [Alteromonas macleodii ATCC 27126]
Length = 459
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 23/96 (23%)
Query: 54 MQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDEDK 104
+QVLV +D G+D++ A + +T+IHR G ARAG G TL+ DE+
Sbjct: 293 LQVLVATDVAARGLDIDDVACVINYTVSEEPETHIHRIGRTARAGAQGMAVTLVSDDEEH 352
Query: 105 LLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLR 140
L +V LQ++D IP +SLR
Sbjct: 353 FLRKIEV------LQESD--------IPLKGAQSLR 374
>gi|118372814|ref|XP_001019601.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
gi|89301368|gb|EAR99356.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
SB210]
Length = 1093
Score = 48.5 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 46/152 (30%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANSP-------------------------- 42
+C + K +YL L+ E I+F +S++ +
Sbjct: 524 VCVEEDKVLYLYHYLQQRPTENAIIFTNSISYAKKIVHLLEILGMKVLCMHSEMQQRQRL 583
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAGQNGH 93
K L F+ G +LV +D G+D+ I TYIHR+G AR G+ G
Sbjct: 584 KKLDQFK-NGQYSILVSTDVAARGLDIPSVQNVVHYQVPLDIDTYIHRSGRTARIGKAGT 642
Query: 94 CFTLL-PKDEDKLLYMFQVKRFKKLLQQADHD 124
C+TL+ PKD +RF+K+++Q D +
Sbjct: 643 CYTLIGPKDG---------QRFQKIIKQLDKE 665
>gi|456358119|dbj|BAM92564.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain,
RhlE protein [Agromonas oligotrophica S58]
Length = 471
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL AFR G ++ LV +D G+DV+ +++ +TY+HR G ARAG G
Sbjct: 286 RTLAAFR-TGEIRTLVATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIGRTARAGAEGV 344
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVH 129
+L+ D++ Y+ ++R K+ + P H
Sbjct: 345 AISLV-AGPDEMSYLRDIERLIKVSLPREDRRTPGH 379
>gi|260904108|ref|ZP_05912430.1| DNA/RNA helicase, superfamily II [Brevibacterium linens BL2]
Length = 489
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A K LK+FR +G + VLV +D G+D++ ++ KTY+HR G RAG
Sbjct: 306 AQREKALKSFR-EGQVDVLVATDVAARGIDIDDVTHVVNYQCPDDEKTYVHRIGRTGRAG 364
Query: 90 QNGHCFTLLPKDE 102
G TL+ D+
Sbjct: 365 NTGIAVTLVDWDD 377
>gi|407685428|ref|YP_006800602.1| ATP-dependent RNA helicase DbpA [Alteromonas macleodii str.
'English Channel 673']
gi|407247039|gb|AFT76225.1| ATP-dependent RNA helicase DbpA [Alteromonas macleodii str.
'English Channel 673']
Length = 459
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 23/96 (23%)
Query: 54 MQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDEDK 104
+QVLV +D G+D++ A + +T+IHR G ARAG G TL+ DE+
Sbjct: 293 LQVLVATDVAARGLDIDDVACVINYTVSEEPETHIHRIGRTARAGAQGMAVTLVSDDEEH 352
Query: 105 LLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLR 140
L +V LQ++D IP +SLR
Sbjct: 353 FLRKIEV------LQESD--------IPLKGAQSLR 374
>gi|377555812|ref|ZP_09785540.1| ATP-dependent RNA helicase RhlE [endosymbiont of Bathymodiolus sp.]
Length = 430
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 52 GHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDE 102
G + VLV +D G+D+ ++ + Y+HR G RAG G +L+ DE
Sbjct: 292 GKVNVLVATDIAARGIDIVELPHVVNFDLPNVPEDYVHRIGRTGRAGSKGEAISLVSADE 351
Query: 103 DKLLYMFQVKRFKKLLQQADHDSCPVHSIPSS 134
K L+ + KKL + D P H +P +
Sbjct: 352 AKQLFDIERLTQKKLERIMVDDFIPSHDVPET 383
>gi|386057057|ref|YP_005973579.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa M18]
gi|347303363|gb|AEO73477.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa M18]
Length = 449
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+ F+ G + +LV +D G+D+E + + Y+HR G RAG +G
Sbjct: 285 RALQRFKA-GEVDLLVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQ 343
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L+ DE +LL + + L ++ + D P H +P ++
Sbjct: 344 AVSLVCADEVELLAAIETLIGQTLQRREEPDFEPEHRVPQTA 385
>gi|327272750|ref|XP_003221147.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Anolis carolinensis]
Length = 445
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 239 SKFKDSYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMNQNKRLGSL 298
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
VL+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 299 NKFKAKARSVLLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITF 358
Query: 98 LPK 100
+ +
Sbjct: 359 VTQ 361
>gi|289769255|ref|ZP_06528633.1| helicase [Streptomyces lividans TK24]
gi|289699454|gb|EFD66883.1| helicase [Streptomyces lividans TK24]
Length = 556
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG G
Sbjct: 374 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGT 432
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 433 AITLVDWDD 441
>gi|406663218|ref|ZP_11071284.1| DEAD-box ATP-dependent RNA helicase CshA [Cecembia lonarensis LW9]
gi|405552735|gb|EKB48086.1| DEAD-box ATP-dependent RNA helicase CshA [Cecembia lonarensis LW9]
Length = 570
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 14/100 (14%)
Query: 37 SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRAR 87
S A K + FR KGH+ VLV +D G+DV+ + + Y+HR G R
Sbjct: 279 SQAQRTKVMNKFR-KGHVSVLVATDVAARGIDVDNVEAVFNFDLPLDEENYVHRIGRTGR 337
Query: 88 AGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCP 127
AG++G + + +D MF+++ +K ++ + P
Sbjct: 338 AGKSGAAISFVTGRKD----MFRIRDLEKFIKTSISKMAP 373
>gi|296387524|ref|ZP_06876999.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1]
gi|416877267|ref|ZP_11919721.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 152504]
gi|334839751|gb|EGM18425.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 152504]
Length = 449
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+ F+ G + +LV +D G+D+E + + Y+HR G RAG +G
Sbjct: 285 RALQRFKA-GEVDLLVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQ 343
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L+ DE +LL + + L ++ + D P H +P ++
Sbjct: 344 AVSLVCADEVELLAAIETLIGQTLQRREEPDFEPEHRVPQTA 385
>gi|421178877|ref|ZP_15636479.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa E2]
gi|404547823|gb|EKA56806.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa E2]
Length = 449
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+ F+ G + +LV +D G+D+E + + Y+HR G RAG +G
Sbjct: 285 RALQRFKA-GEVDLLVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQ 343
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L+ DE +LL + + L ++ + D P H +P ++
Sbjct: 344 AVSLVCADEVELLAAIETLIGQTLQRREEPDFEPEHRVPQTA 385
>gi|404401073|ref|ZP_10992657.1| ATP-dependent RNA helicase [Pseudomonas fuscovaginae UPB0736]
Length = 445
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L +F+ +G +Q+LV +D G+D+E + + Y+HR G RAG
Sbjct: 281 ATRQRALDSFK-QGEVQILVATDVAARGLDIEDLPLVVNLDLPIVAEDYVHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE LL + + L + + P H +P +
Sbjct: 340 ATGEAISLVCADEVNLLSAIETLTRQPLKRHDEAGFEPDHRVPDTD 385
>gi|416864075|ref|ZP_11915427.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 138244]
gi|334835095|gb|EGM13996.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 138244]
gi|453044054|gb|EME91780.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
PA21_ST175]
Length = 449
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+ F+ G + +LV +D G+D+E + + Y+HR G RAG +G
Sbjct: 285 RALQRFKA-GEVDLLVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQ 343
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L+ DE +LL + + L ++ + D P H +P ++
Sbjct: 344 AVSLVCADEVELLAAIETLIGQTLQRREEPDFEPEHRVPQTA 385
>gi|293376696|ref|ZP_06622919.1| DEAD/DEAH box helicase [Turicibacter sanguinis PC909]
gi|325845185|ref|ZP_08168493.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
gi|292644653|gb|EFF62740.1| DEAD/DEAH box helicase [Turicibacter sanguinis PC909]
gi|325488781|gb|EGC91182.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
Length = 368
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 12/116 (10%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANS-PKTLKAFRGKGHMQVLVCSDAMTSGMD 68
C +K + L ++ G ++ + N + LK+FR + +Q L+ +D + G+D
Sbjct: 246 CRTKRRADQLFAKMKQRGFNTQVIHSDIAQNKRERILKSFR-EADLQYLIATDVASRGLD 304
Query: 69 VERAAYI---------KTYIHRAGPRARAGQNGH-CFTLLPKDEDKLLYMFQVKRF 114
+ +I +TYIHR G RAG+ G+ C + PKD+ +L + + RF
Sbjct: 305 ISGVTHIYNYDIPETPETYIHRIGRTGRAGEEGYTCLFVAPKDDFELNAIERKLRF 360
>gi|403347814|gb|EJY73340.1| hypothetical protein OXYTRI_05530 [Oxytricha trifallax]
Length = 508
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 57/144 (39%), Gaps = 42/144 (29%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPK--------TLKAFRGKGHM---------- 54
K K YL+ LL G+K I+F ++ S K KA G +
Sbjct: 283 KHKETYLVYLLTQFAGQKMIIFTTTCNQSMKLALILRNLNFKAVNINGQLTQTQRLSALN 342
Query: 55 -------QVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+L+ +D + G+D+ ++ K Y+HR G ARAG+ G T +
Sbjct: 343 KFKANERNILIATDVASRGLDIPEVDFVINFDIPQHSKDYVHRVGRTARAGKTGKAITFV 402
Query: 99 PKDEDKLLYMFQVKRFKKLLQQAD 122
+ + V+ F+K+ Q D
Sbjct: 403 TQ--------YDVETFQKIEQLID 418
>gi|345001916|ref|YP_004804770.1| DEAD/DEAH box helicase domain-containing protein [Streptomyces sp.
SirexAA-E]
gi|344317542|gb|AEN12230.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. SirexAA-E]
Length = 738
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG G
Sbjct: 314 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGT 372
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 373 AITLVDWDD 381
>gi|336233335|ref|YP_004590081.1| ATP-dependent RNA helicase [Buchnera aphidicola (Cinara
tujafilina)]
gi|335345276|gb|AEH39822.1| ATP-dependent RNA helicase [Buchnera aphidicola (Cinara
tujafilina)]
Length = 603
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 20/121 (16%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL R G + +L+ +D G+DV+R +++ ++Y+HR G RAG+ G
Sbjct: 285 QTLDRLRN-GKLDILIATDVAARGLDVDRISFVINYDIPMDAESYVHRIGRTGRAGRTGR 343
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYK-SEYVESQA 152
+ E +LL ++R KL + P +P S + S R + K SE ++ +
Sbjct: 344 ALLFVENRERRLLR--NIERIVKL-------TIPEVILPKSELLSQRRLQKFSEKIQKEL 394
Query: 153 N 153
N
Sbjct: 395 N 395
>gi|422605130|ref|ZP_16677145.1| ATP-dependent RNA helicase rhlE, partial [Pseudomonas syringae pv.
mori str. 301020]
gi|330888787|gb|EGH21448.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. mori str.
301020]
Length = 391
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +++LV +D G+D++ + + YIHR G RAG
Sbjct: 230 ATRQRALDRFKSN-EVKILVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAG 288
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE +LL +V + L ++ + D P H +P++
Sbjct: 289 LTGEAISLVCADEVELLSAIEVLTRQTLERKEEQDFEPEHRVPTTD 334
>gi|407689364|ref|YP_006804537.1| ATP-dependent RNA helicase DbpA [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407292744|gb|AFT97056.1| ATP-dependent RNA helicase DbpA [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 459
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 23/96 (23%)
Query: 54 MQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDEDK 104
+QVLV +D G+D++ A + +T+IHR G ARAG G TL+ DE+
Sbjct: 293 LQVLVATDVAARGLDIDDVACVINYTVSEEPETHIHRIGRTARAGAQGMAVTLVSDDEEH 352
Query: 105 LLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLR 140
L +V LQ++D IP +SLR
Sbjct: 353 FLRKIEV------LQESD--------IPLKGAQSLR 374
>gi|403048765|ref|ZP_10903249.1| superfamily II DNA/RNA helicase [SAR86 cluster bacterium SAR86D]
Length = 330
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 15/90 (16%)
Query: 40 NSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQ 90
N K L AF+ +++LV +D G+D+++ + + K YIHR G R G
Sbjct: 205 NRMKALDAFKN-NRIKILVATDVAARGIDIKKMSQVINFDVPTVAKDYIHRIGRTGRGGD 263
Query: 91 NGHCFTLLPKDEDKLLYMFQVKRFKKLLQQ 120
G TL+ DE KLL + +KLL Q
Sbjct: 264 KGKAITLVSADEFKLL-----RDIEKLLSQ 288
>gi|353232410|emb|CCD79765.1| putative dead box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 603
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 43/143 (30%)
Query: 14 LKPIYLIPLLRNLGGEKFIVFASSVANSPKT---LKAFRG-------------------- 50
++ ++L+ L+R ++ + FA++V + + L +F+G
Sbjct: 389 IRVLFLVYLVRQKHKKRILCFANTVDCAKRLNMLLASFKGIKSKFLSSHLHPDKRQRILN 448
Query: 51 ---KGHMQVLVCSDAMTSGMDVERA----AY-----IKTYIHRAGPRARAGQNGHCFTLL 98
G Q+LVC+D+M G+D+ +Y IK YIHR G ARAG+ G + LL
Sbjct: 449 LFSVGQCQILVCTDSMARGIDINDVECVVSYDVPPSIKIYIHRIGRTARAGKKGTAYNLL 508
Query: 99 PKDEDKLLYMFQVKRFKKLLQQA 121
+ Q FKK L+ A
Sbjct: 509 STN--------QFYHFKKDLKLA 523
>gi|289623983|ref|ZP_06456937.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
aesculi str. NCPPB 3681]
gi|289648770|ref|ZP_06480113.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
aesculi str. 2250]
gi|422584152|ref|ZP_16659265.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330868972|gb|EGH03681.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. aesculi
str. 0893_23]
Length = 442
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +++LV +D G+D++ + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKSN-EVKILVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE +LL +V + L ++ + D P H +P++
Sbjct: 340 LTGEAISLVCADEVELLSAIEVLTRQTLERKEEQDFEPEHRVPTTD 385
>gi|395538707|ref|XP_003771316.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Sarcophilus harrisii]
Length = 460
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F+VF S+ N+ +T R G H Q
Sbjct: 248 SKFKDSYLVYILNELAGNSFMVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSL 307
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 308 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITF 367
Query: 98 LPK 100
+ +
Sbjct: 368 VTQ 370
>gi|350572246|ref|ZP_08940551.1| ATP-dependent RNA helicase RhlE [Neisseria wadsworthii 9715]
gi|349790502|gb|EGZ44411.1| ATP-dependent RNA helicase RhlE [Neisseria wadsworthii 9715]
Length = 457
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 24/117 (20%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL AF+ +G ++VLV +D G+D+ ++ + Y+HR G RAG +G
Sbjct: 289 ETLNAFK-EGSLRVLVATDVAARGLDIAELPFVINYEMPTQPEDYVHRIGRTGRAGADGV 347
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVES 150
+L+ ++E K MF+ + + + IP IE P + ++ ES
Sbjct: 348 AISLMDENEQK---MFEAIK-----------ALTGNDIPLERIEGFEPRWGNDAAES 390
>gi|416018676|ref|ZP_11565604.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
glycinea str. B076]
gi|320322648|gb|EFW78741.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
glycinea str. B076]
Length = 442
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +++LV +D G+D++ + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKSN-EVKILVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE +LL +V + L ++ + D P H +P++
Sbjct: 340 LTGEAISLVCADEVELLSAIEVLTRQTLERKEEQDFEPEHRVPTTD 385
>gi|336326255|ref|YP_004606221.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100]
gi|336102237|gb|AEI10057.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100]
Length = 420
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 18/125 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR +G + VLV +D G+DVE ++ + Y+HR G RAG G
Sbjct: 296 QCLEAFR-EGTVDVLVATDVAARGIDVEDVTHVINYQCPDDDRAYVHRIGRTGRAGHTGM 354
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQAN 153
TL+ DE V RF L + + D SSS E L V +
Sbjct: 355 AVTLVGWDE--------VDRFNALCETLNLDLSNPPQWFSSSPEFLEAFALPSAVTDRVG 406
Query: 154 RKRKI 158
R++
Sbjct: 407 SPRRV 411
>gi|421158182|ref|ZP_15617475.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa ATCC 25324]
gi|404549902|gb|EKA58715.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa ATCC 25324]
Length = 449
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+ F+ G + +LV +D G+D+E + + Y+HR G RAG +G
Sbjct: 285 RALQRFKA-GEVDLLVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQ 343
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L+ DE +LL + + L ++ + D P H +P ++
Sbjct: 344 AVSLVCADEVELLAAIETLIGQTLQRREEPDFEPEHRVPQTA 385
>gi|418460459|ref|ZP_13031553.1| DNA/RNA helicase, superfamily II, partial [Saccharomonospora azurea
SZMC 14600]
gi|359739435|gb|EHK88301.1| DNA/RNA helicase, superfamily II, partial [Saccharomonospora azurea
SZMC 14600]
Length = 488
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLV +D G+DV+ ++ KTY+HR G RAG+ G
Sbjct: 288 QALRAFR-SGKVDVLVATDVAARGIDVDDVTHVINYQTPEDEKTYVHRIGRTGRAGKTGV 346
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 347 AITLVDWDE 355
>gi|401885301|gb|EJT49422.1| hypothetical protein A1Q1_01444 [Trichosporon asahii var. asahii
CBS 2479]
Length = 690
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 17/133 (12%)
Query: 18 YLIPLLRNLGGEKFIVFAS--SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI 75
YL LL+ G ++ S VA + LK FR +LV +D G+D+ ++
Sbjct: 278 YLSVLLQAAGYRVSYIYGSLDQVARQ-QQLKRFRA-AETDLLVVTDVAARGIDIPSIPHV 335
Query: 76 ---------KTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSC 126
+ ++HR G ARAGQ+GH +TL+ +D+ L YM ++ F L + D
Sbjct: 336 INYDLPTGVRVFVHRVGRTARAGQHGHAWTLVTRDD--LPYMRDLEIF--LERDFLKDKE 391
Query: 127 PVHSIPSSSIESL 139
++P S+E++
Sbjct: 392 SYGNLPRDSLETM 404
>gi|358055430|dbj|GAA98550.1| hypothetical protein E5Q_05237 [Mixia osmundae IAM 14324]
Length = 749
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Query: 52 GHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGHCFTLLPKDE 102
G M VLV +D G+DV + A I++Y+HR G RAG+ G T L D+
Sbjct: 637 GEMSVLVATDLAGRGIDVPDVSLVINFQMANNIESYVHRIGRTGRAGRTGVAVTFLTNDD 696
Query: 103 DKLLY 107
D+++Y
Sbjct: 697 DEVMY 701
>gi|163750030|ref|ZP_02157274.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
gi|161330304|gb|EDQ01285.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
Length = 436
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L++F+ G ++VLV +D G+D+ Y+ + Y+HR G RAG G
Sbjct: 312 KVLQSFK-DGEVRVLVATDVAARGIDIIDLNYVVNYELPYKAEDYVHRIGRTGRAGNKGV 370
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQ 120
TLL ++++ LL +V K+L QQ
Sbjct: 371 AITLLCREDEHLLEEVEVVLDKRLPQQ 397
>gi|322795370|gb|EFZ18163.1| hypothetical protein SINV_10215 [Solenopsis invicta]
Length = 410
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K +YL+ +L L G F++F + N+ +T R G H Q
Sbjct: 219 KFKDVYLVHILNELAGNSFMIFCGTCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALT 278
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+L+ +D + G+D+ + K YIHR G ARAG++G T +
Sbjct: 279 KFKAKNRSILISTDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFV 338
Query: 99 PK 100
+
Sbjct: 339 TQ 340
>gi|317025605|ref|XP_001389412.2| ATP-dependent RNA helicase dbp6 [Aspergillus niger CBS 513.88]
Length = 861
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 10/82 (12%)
Query: 32 IVFASSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVER---------AAYIKTYIHRA 82
I+ ++ + S KTL A+R +G + V++ +D + G+D+ A I TY+HR
Sbjct: 720 IIKSNKSSASRKTLTAYR-RGKISVIIATDRASRGLDLRSLTHVVNYDVPASITTYVHRV 778
Query: 83 GPRARAGQNGHCFTLLPKDEDK 104
G ARAGQ G +TL+ E K
Sbjct: 779 GRTARAGQKGSAWTLVAHREGK 800
>gi|15599145|ref|NP_252639.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
gi|218889767|ref|YP_002438631.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
gi|418587191|ref|ZP_13151225.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
MPAO1/P1]
gi|418592075|ref|ZP_13155953.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
MPAO1/P2]
gi|421152185|ref|ZP_15611773.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa ATCC 14886]
gi|421518498|ref|ZP_15965172.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO579]
gi|9950138|gb|AAG07337.1|AE004813_4 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
gi|218769990|emb|CAW25752.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
gi|375042196|gb|EHS34856.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
MPAO1/P1]
gi|375049103|gb|EHS41612.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
MPAO1/P2]
gi|404347980|gb|EJZ74329.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO579]
gi|404525815|gb|EKA36064.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa ATCC 14886]
Length = 449
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+ F+ G + +LV +D G+D+E + + Y+HR G RAG +G
Sbjct: 285 RALQRFKA-GEVDLLVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQ 343
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L+ DE +LL + + L ++ + D P H +P ++
Sbjct: 344 AVSLVCADEVELLAAIETLIGQTLQRREEPDFEPEHRVPQTA 385
>gi|350638465|gb|EHA26821.1| hypothetical protein ASPNIDRAFT_35758 [Aspergillus niger ATCC 1015]
Length = 861
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 10/82 (12%)
Query: 32 IVFASSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVER---------AAYIKTYIHRA 82
I+ ++ + S KTL A+R +G + V++ +D + G+D+ A I TY+HR
Sbjct: 720 IIKSNKSSASRKTLTAYR-RGKISVIIATDRASRGLDLRSLTHVVNYDVPASITTYVHRV 778
Query: 83 GPRARAGQNGHCFTLLPKDEDK 104
G ARAGQ G +TL+ E K
Sbjct: 779 GRTARAGQKGSAWTLVAHREGK 800
>gi|209545470|ref|YP_002277699.1| DEAD/DEAH box helicase [Gluconacetobacter diazotrophicus PAl 5]
gi|209533147|gb|ACI53084.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 390
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 10/64 (15%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL FR +G + VLV +D M G+DVE A + +TYIHR G ARAG+ G
Sbjct: 302 RTLDDFR-RGRLLVLVATDVMARGIDVEDVALVVNFDIPEQPETYIHRIGRTARAGRRGT 360
Query: 94 CFTL 97
+L
Sbjct: 361 ALSL 364
>gi|354593920|ref|ZP_09011963.1| ATP-dependent RNA helicase [Commensalibacter intestini A911]
gi|353673031|gb|EHD14727.1| ATP-dependent RNA helicase [Commensalibacter intestini A911]
Length = 476
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 10/77 (12%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
KT++ F+ G +Q LVCSD G+DV+ +++ + Y+HR G RAG+ G
Sbjct: 315 KTMEEFKN-GEIQFLVCSDIAARGIDVDHLSHVFNFDLPRQAEDYVHRIGRTGRAGRTGF 373
Query: 94 CFTLLPKDEDKLLYMFQ 110
++L +D+ + + +
Sbjct: 374 AYSLATEDDKETIEAIE 390
>gi|298156611|gb|EFH97706.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
Length = 442
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +++LV +D G+D++ + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKSN-EVKILVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE +LL +V + L ++ + D P H +P++
Sbjct: 340 LTGEAISLVCADEVELLSAIEVLTRQTLERKEEQDFEPEHRVPTTD 385
>gi|257482171|ref|ZP_05636212.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
tabaci str. ATCC 11528]
Length = 442
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +++LV +D G+D++ + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKSN-EVKILVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE +LL +V + L ++ + D P H +P++
Sbjct: 340 LTGEAISLVCADEVELLSAIEVLTRQTLERKEEQDFEPEHRVPTTD 385
>gi|195328224|ref|XP_002030816.1| GM24369 [Drosophila sechellia]
gi|194119759|gb|EDW41802.1| GM24369 [Drosophila sechellia]
Length = 687
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 48/158 (30%)
Query: 5 LSPQIC--ESKLKPIYLIPLLRNLGGEKFIVFASSVANSPK---TLKAFRGK-------- 51
L+ Q C E +LKP+ + L+ ++F+ F +S + + LK K
Sbjct: 419 LTEQYCVTELRLKPLTVFALVEKYKWKRFLCFTNSSDQASRLTFVLKVLFQKYSTNVSEL 478
Query: 52 ------------------GHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGP 84
G + L+CSDA+ G+DV E +I TYIHR G
Sbjct: 479 SGNLSAKVRKERLRDFAAGKINGLICSDALARGIDVADVDVVLSYEIPRHITTYIHRVGR 538
Query: 85 RARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQAD 122
ARAG+ G TLL + + + FKK+L A+
Sbjct: 539 TARAGRKGTAVTLLTE--------YDMTLFKKILSDAN 568
>gi|358365431|dbj|GAA82053.1| DEAD/DEAH box helicase [Aspergillus kawachii IFO 4308]
Length = 861
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 10/82 (12%)
Query: 32 IVFASSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVER---------AAYIKTYIHRA 82
I+ ++ + S KTL A+R +G + V++ +D + G+D+ A I TY+HR
Sbjct: 720 IIKSNKSSASRKTLTAYR-RGKISVIIATDRASRGLDLRSLTHVVNYDVPASITTYVHRV 778
Query: 83 GPRARAGQNGHCFTLLPKDEDK 104
G ARAGQ G +TL+ E K
Sbjct: 779 GRTARAGQEGSAWTLVAHREGK 800
>gi|416024594|ref|ZP_11568655.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
glycinea str. race 4]
gi|422403313|ref|ZP_16480371.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. glycinea
str. race 4]
gi|320330567|gb|EFW86546.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330873565|gb|EGH07714.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 442
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +++LV +D G+D++ + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKSN-EVKILVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE +LL +V + L ++ + D P H +P++
Sbjct: 340 LTGEAISLVCADEVELLSAIEVLTRQTLERKEEQDFEPEHRVPTTD 385
>gi|449481708|ref|XP_002195464.2| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Taeniopygia
guttata]
Length = 450
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 247 SKFKDSYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSL 306
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 307 NKFKAKARSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITF 366
Query: 98 LPK 100
+ +
Sbjct: 367 VTQ 369
>gi|420137836|ref|ZP_14645791.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa CIG1]
gi|403249405|gb|EJY62906.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa CIG1]
Length = 449
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+ F+ G + +LV +D G+D+E + + Y+HR G RAG +G
Sbjct: 285 RALQRFKA-GEVDLLVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQ 343
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L+ DE +LL + + L ++ + D P H +P ++
Sbjct: 344 AVSLVCADEVELLAAIETLIGQTLQRREEPDFEPEHRVPQTA 385
>gi|449279156|gb|EMC86802.1| putative ATP-dependent RNA helicase DDX47, partial [Columba livia]
Length = 453
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 249 SKFKDSYLVHILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGAL 308
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 309 NKFKAKARSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITF 368
Query: 98 LPK 100
+ +
Sbjct: 369 VTQ 371
>gi|71734815|ref|YP_276470.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71555368|gb|AAZ34579.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 450
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +++LV +D G+D++ + + YIHR G RAG
Sbjct: 289 ATRQRALDRFKSN-EVKILVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAG 347
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE +LL +V + L ++ + D P H +P++
Sbjct: 348 LTGEAISLVCADEVELLSAIEVLTRQTLERKEEQDFEPEHRVPTTD 393
>gi|24375277|ref|NP_719320.1| ATP-dependent RNA helicase RhlE [Shewanella oneidensis MR-1]
gi|24350080|gb|AAN56764.1| ATP-dependent RNA helicase RhlE [Shewanella oneidensis MR-1]
Length = 535
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 13/123 (10%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G ++VLV +D G+D+++ + + Y+HR G RAG G
Sbjct: 284 KALADFK-SGEVRVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQ 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQAN 153
+L+ +E KLL + + L +Q PVH++P + +L P K V++ AN
Sbjct: 343 AVSLVSSEEIKLLKDIERLINRVLERQEVEGFSPVHALPET---TLNPQGKDTKVKAVAN 399
Query: 154 RKR 156
++
Sbjct: 400 HRK 402
>gi|107103467|ref|ZP_01367385.1| hypothetical protein PaerPA_01004537 [Pseudomonas aeruginosa PACS2]
Length = 449
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+ F+ G + +LV +D G+D+E + + Y+HR G RAG +G
Sbjct: 285 RALQRFKA-GEVDLLVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQ 343
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L+ DE +LL + + L ++ + D P H +P ++
Sbjct: 344 AVSLVCADEVELLAAIETLIGQTLQRREEPDFEPEHRVPQTA 385
>gi|395768631|ref|ZP_10449146.1| ATP-dependent RNA helicase [Streptomyces acidiscabies 84-104]
Length = 888
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG +G
Sbjct: 267 QALRAFR-NGKVDVLVCTDVAARGIDVENVTHVINYQSPEDEKTYLHRIGRTGRAGASGT 325
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 326 AITLVDWDD 334
>gi|256075757|ref|XP_002574183.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 837
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 17/79 (21%)
Query: 52 GHMQVLVCSDAMTSGMDVERA----AY-----IKTYIHRAGPRARAGQNGHCFTLLPKDE 102
G Q+LVC+D+M G+D+ +Y IK YIHR G ARAG+ G + LL +
Sbjct: 453 GQCQILVCTDSMARGIDINDVECVVSYDVPPSIKIYIHRIGRTARAGKKGTAYNLLSTN- 511
Query: 103 DKLLYMFQVKRFKKLLQQA 121
Q FKK L+ A
Sbjct: 512 -------QFYHFKKDLKLA 523
>gi|422682023|ref|ZP_16740290.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|331011364|gb|EGH91420.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
Length = 442
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +++LV +D G+D++ + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKSN-EVKILVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE +LL +V + L ++ + D P H +P++
Sbjct: 340 LTGEAISLVCADEVELLSAIEVLTRQTLERKEEQDFEPEHRVPTTD 385
>gi|452824703|gb|EME31704.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 758
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 23/128 (17%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAGQNGHC 94
TL FR +G QVL+ +D G+D+ I YIHRAG RAG+ G C
Sbjct: 488 TLSKFR-EGSFQVLIATDVAARGLDINGVDLVIQYRVPEDIDMYIHRAGRTGRAGRQGTC 546
Query: 95 FTLLPKDE-DKLLYMFQVKRFKKLLQ-----------QADHDSCPVHSIPSSSIESLRPI 142
L +E +KL M V + + L+ +A+ ++ +E L P+
Sbjct: 547 IILYTDEERNKLTLMENVCKIRFRLESPPSIQQVIETKANGFLRASQAVEGKWVEPLIPV 606
Query: 143 YKSEYVES 150
K EY+ES
Sbjct: 607 VK-EYIES 613
>gi|392307103|ref|ZP_10269637.1| ATP-dependent RNA helicase [Pseudoalteromonas citrea NCIMB 1889]
Length = 465
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 14/107 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G + VLV +D + G+D+ Y+ + Y+HR G RAG +G
Sbjct: 284 KALNGFK-TGEVNVLVATDIVARGLDIAELPYVVNYDLPNIYEDYVHRIGRTGRAGSDGQ 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDS--CPVHSIPSSSIES 138
+ + D+ LY ++RF L H+ P H +P ++++
Sbjct: 343 AVSFVTVDDAADLY--GIERFIGALIPRAHEEGFAPQHPVPEVALDT 387
>gi|242003922|ref|XP_002422909.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212505802|gb|EEB10171.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 458
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 71/178 (39%), Gaps = 49/178 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKT--------------------------LK 46
K K +YL+ ++ + G F++F + N+ +T L
Sbjct: 246 KFKDVYLVSIINEMAGNTFMIFCGTCHNTLRTALLLRQLGFTAIPLHGQMSQNKRLGALT 305
Query: 47 AFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
FR K +L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 306 KFRAKNR-SILISTDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITF 364
Query: 98 LPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQANRK 155
+ + + V+ +++ ++Q P+ I + +L + E+Q N K
Sbjct: 365 VTQ--------YDVELYQR-IEQLIGKKLPLFKIEEDEVMTL----QERVAEAQRNSK 409
>gi|348667582|gb|EGZ07407.1| hypothetical protein PHYSODRAFT_527947 [Phytophthora sojae]
Length = 773
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 16/138 (11%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGH 93
+ L+ FR G + +L+C+D G+DV E I TY+HR G ARAG+NG
Sbjct: 435 EALQKFR-DGTVDILLCTDIAARGIDVRGVHAVINYEMPKDITTYVHRVGRTARAGRNGR 493
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESL----RPIYKSEYVE 149
TL E + L M QV R K ++ PV + + IES+ + + E +E
Sbjct: 494 AVTL--TSESRRLVMKQVSRHCKGFVKSRAVPDPVIAQWKARIESMQGDVKLVMHEETLE 551
Query: 150 SQANRKRKIGFKLSRMVK 167
+ K + + ++K
Sbjct: 552 KRMREAEKEATRATNLLK 569
>gi|372278653|ref|ZP_09514689.1| DEAD/DEAH box helicase [Oceanicola sp. S124]
Length = 440
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ +KAFR G + VLV +D G+D+ AY+ Y+HR G ARAG+ G
Sbjct: 297 RAIKAFR-DGTITVLVATDVAARGIDIPGVAYVINYDLPEVPDNYVHRIGRTARAGREGE 355
Query: 94 CFTLLPKDEDKLLYMFQ 110
DE LL Q
Sbjct: 356 AIAFCAPDEGDLLRQIQ 372
>gi|119186961|ref|XP_001244087.1| hypothetical protein CIMG_03528 [Coccidioides immitis RS]
gi|118595828|sp|Q1E1N5.1|RRP3_COCIM RecName: Full=ATP-dependent rRNA helicase RRP3
gi|392870806|gb|EAS32639.2| ATP-dependent rRNA helicase RRP3 [Coccidioides immitis RS]
Length = 474
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 51/126 (40%), Gaps = 34/126 (26%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ------- 55
I K K IYLI LL G+ I+F +V + + R G H Q
Sbjct: 269 IIPHKHKDIYLIYLLNEFPGQSVIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARL 328
Query: 56 ------------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
+LV +D G+D+ + KTYIHR G ARAG++G
Sbjct: 329 GALGKFRSRSRNILVATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRA 388
Query: 95 FTLLPK 100
F+L+ +
Sbjct: 389 FSLVTQ 394
>gi|228473039|ref|ZP_04057796.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Capnocytophaga
gingivalis ATCC 33624]
gi|228275621|gb|EEK14398.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Capnocytophaga
gingivalis ATCC 33624]
Length = 588
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 19/98 (19%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAGQNGHCF 95
+K FR K +Q+LV +D G+DV+ + I+TY HR+G RAG++G
Sbjct: 292 MKGFRAK-QIQMLVATDVAARGIDVDDITHVIHYQLPDEIETYTHRSGRTGRAGKSGVSM 350
Query: 96 TLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPS 133
+L K E K ++K +K++Q+ + SIPS
Sbjct: 351 VILTKSEAK-----RIKTIEKIIQK----TFEYKSIPS 379
>gi|403286623|ref|XP_003934579.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Saimiri
boliviensis boliviensis]
Length = 547
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 34/121 (28%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 339 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 398
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 399 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 458
Query: 98 L 98
+
Sbjct: 459 V 459
>gi|408675131|ref|YP_006874879.1| DEAD/DEAH box helicase domain protein [Emticicia oligotrophica DSM
17448]
gi|387856755|gb|AFK04852.1| DEAD/DEAH box helicase domain protein [Emticicia oligotrophica DSM
17448]
Length = 435
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 12/81 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L F+ K +VLV +D G+DV+ AY+ +TY+HR G RAG NG
Sbjct: 287 RALNNFKSK-ETRVLVATDIAARGIDVDDLAYVINYEIPNIPETYVHRIGRTGRAGSNGI 345
Query: 94 CFTLLPKDEDKLLYMFQVKRF 114
F+ +E L Y+ ++R
Sbjct: 346 AFSFCENEE--LTYLKDIQRL 364
>gi|302795308|ref|XP_002979417.1| hypothetical protein SELMODRAFT_110816 [Selaginella moellendorffii]
gi|300152665|gb|EFJ19306.1| hypothetical protein SELMODRAFT_110816 [Selaginella moellendorffii]
Length = 749
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGH 93
+ L+AFR K + L+ +D G+D+ E IKTY+HR G ARAG++G
Sbjct: 403 EALEAFR-KQEVDFLIATDVAARGLDIIGVESVINLECPKEIKTYVHRVGRTARAGRHGR 461
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQ 120
TL+ ++D+LL KR LQ+
Sbjct: 462 SVTLMT-EQDRLLLKAVAKRAGSKLQK 487
>gi|254509500|ref|ZP_05121567.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
KLH11]
gi|221533211|gb|EEE36199.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
KLH11]
Length = 419
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 24/123 (19%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ +KAFR G + +LV +D G+D+ AY+ Y+HR G ARAG+ G
Sbjct: 286 RAIKAFRA-GEINILVATDVAARGIDIPGVAYVINYDLPEVPDNYVHRIGRTARAGREGE 344
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQAN 153
+E LL Q+++ K+ IP +S E + + Q N
Sbjct: 345 AIAFCSAEEVDLLR--QIQKLMKI------------EIPVASGEMPEAVAPKKPARRQNN 390
Query: 154 RKR 156
R+R
Sbjct: 391 RRR 393
>gi|255957139|ref|XP_002569322.1| Pc21g23550 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591033|emb|CAP97252.1| Pc21g23550 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 819
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 10/76 (13%)
Query: 32 IVFASSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRA 82
I+ ++ + S KTL A+R +G + V+V +D + G+D+E + I TY+HR
Sbjct: 688 IIKSNKSSASRKTLTAYR-QGRISVIVATDRASRGLDLESLTHVINYDIPTSITTYVHRV 746
Query: 83 GPRARAGQNGHCFTLL 98
G ARAG+ G ++L+
Sbjct: 747 GRTARAGRAGSAWSLV 762
>gi|157871774|ref|XP_001684436.1| putative ATP dependent DEAD-box helicase [Leishmania major strain
Friedlin]
gi|68127505|emb|CAJ05468.1| putative ATP dependent DEAD-box helicase [Leishmania major strain
Friedlin]
Length = 389
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 14/98 (14%)
Query: 22 LLRNLGGEKFIVFASS----VANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI-- 75
L + + EKF V A A + ++ FR GH +VL+ +D G+DVER + +
Sbjct: 271 LAKKMTREKFAVSAMHGDMPQAERDEIMRQFR-NGHSRVLITTDLWARGIDVERVSLVLS 329
Query: 76 -------KTYIHRAGPRARAGQNGHCFTLLPKDEDKLL 106
+ YIHR G R G+ G T + DE +LL
Sbjct: 330 YDLPLAREQYIHRIGRTGRMGRTGLAITFVRHDELRLL 367
>gi|407701653|ref|YP_006826440.1| ATP-dependent RNA helicase DbpA [Alteromonas macleodii str. 'Black
Sea 11']
gi|407250800|gb|AFT79985.1| ATP-dependent RNA helicase DbpA [Alteromonas macleodii str. 'Black
Sea 11']
Length = 459
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 23/96 (23%)
Query: 54 MQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDEDK 104
+QVLV +D G+D++ A + +T+IHR G ARAG G TL+ DE+
Sbjct: 293 LQVLVATDVAARGLDIDDVACVINYTVSEEPETHIHRIGRTARAGAQGMAVTLVGDDEEH 352
Query: 105 LLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLR 140
L +V LQ++D IP +SLR
Sbjct: 353 FLRKIEV------LQESD--------IPLKGAQSLR 374
>gi|83950175|ref|ZP_00958908.1| putative ATP-dependent RNA helicase protein [Roseovarius
nubinhibens ISM]
gi|83838074|gb|EAP77370.1| putative ATP-dependent RNA helicase protein [Roseovarius
nubinhibens ISM]
Length = 431
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 12/84 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ +KAFR G + VLV +D G+D+ AY+ Y+HR G ARAG+ G
Sbjct: 286 RAIKAFRA-GEINVLVATDVAARGIDIPGVAYVINYDLPDVPDNYVHRIGRTARAGREGE 344
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKL 117
+E LL Q++R K+
Sbjct: 345 AIAFCSSEEADLLR--QIQRLMKI 366
>gi|443312790|ref|ZP_21042405.1| DNA/RNA helicase, superfamily II [Synechocystis sp. PCC 7509]
gi|442777246|gb|ELR87524.1| DNA/RNA helicase, superfamily II [Synechocystis sp. PCC 7509]
Length = 432
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 15/88 (17%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ +G ++VLV +D + G+D+ER Y+ + Y+HR G RAG+ G
Sbjct: 286 KALNDFK-QGKVRVLVATDVASRGLDIERLPYVVNYELPNVPEDYVHRIGRTGRAGKEGR 344
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQA 121
+L+ K+E + L + +KLL Q
Sbjct: 345 AVSLVCKEEYEYL-----ESIEKLLNQT 367
>gi|408492694|ref|YP_006869063.1| ATP-dependent large subunit ribosomal RNA helicase DbpA-like
protein [Psychroflexus torquis ATCC 700755]
gi|408469969|gb|AFU70313.1| ATP-dependent large subunit ribosomal RNA helicase DbpA-like
protein [Psychroflexus torquis ATCC 700755]
Length = 443
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 34/118 (28%)
Query: 19 LIPLLRNLGGEKFIVFASSVANSPKTLK----------AFRG---------------KGH 53
L+ L + GGE+ I+F + A K K A G +GH
Sbjct: 234 LLHFLNSKGGERGIIFCKTKAAVNKLAKKLAINKFSSGAIHGSLTQGIRDRIMGQFREGH 293
Query: 54 MQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDE 102
+ +LV +D G+DV+ +Y+ + Y+HR+G ARAG G T+L +E
Sbjct: 294 IDILVATDLAARGIDVKEVSYVVNYHLPDTYEAYVHRSGRTARAGAKGLSLTILQHEE 351
>gi|398964629|ref|ZP_10680406.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM30]
gi|398148015|gb|EJM36703.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM30]
Length = 446
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 53 HMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDED 103
+Q+LV +D G+D+E + + YIHR G RAG G +L+ DE
Sbjct: 294 EVQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGATGEAISLVCADEV 353
Query: 104 KLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
LL ++ + L + + D P H +P +
Sbjct: 354 NLLSAIEMLTRQTLKRHNEPDFEPEHRVPDTD 385
>gi|345866343|ref|ZP_08818371.1| DEAD/DEAH box helicase family protein [Bizionia argentinensis
JUB59]
gi|344049393|gb|EGV44989.1| DEAD/DEAH box helicase family protein [Bizionia argentinensis
JUB59]
Length = 449
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 10/72 (13%)
Query: 48 FRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
FR +GH+ +LV +D G+DV+ +Y+ Y+HR+G ARAG G T+L
Sbjct: 289 FR-EGHIDILVATDLAARGIDVKEISYVVNYHLPDTYDAYVHRSGRTARAGATGLSLTIL 347
Query: 99 PKDEDKLLYMFQ 110
++E + + F+
Sbjct: 348 QQEEVQDIADFE 359
>gi|302792278|ref|XP_002977905.1| hypothetical protein SELMODRAFT_107914 [Selaginella moellendorffii]
gi|300154608|gb|EFJ21243.1| hypothetical protein SELMODRAFT_107914 [Selaginella moellendorffii]
Length = 741
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 11/91 (12%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAG 89
A + L+AFR K + L+ +D G+D+ E IKTY+HR G ARAG
Sbjct: 397 AQRLEALEAFR-KQEVDFLIATDVAARGLDIIGVESVINLECPKEIKTYVHRVGRTARAG 455
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQ 120
++G TL+ ++D+LL KR LQ+
Sbjct: 456 RHGRSVTLMT-EQDRLLLKAVAKRAGSKLQK 485
>gi|336124129|ref|YP_004566177.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
gi|335341852|gb|AEH33135.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
Length = 485
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 14/103 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G +++LV +D G+D+++ + + Y+HR G RAG G+
Sbjct: 305 KALANFK-SGEIRILVATDIAARGIDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGAEGN 363
Query: 94 CFTLLPKDEDKLLYMFQVKRF-KKLLQQADHDS-CPVHSIPSS 134
+L+ DE K MF ++R + LL++ + + PV+ +P+S
Sbjct: 364 AISLVCADEAK--DMFAIERLTQNLLERIEVEGFAPVNKLPAS 404
>gi|307195490|gb|EFN77376.1| Probable ATP-dependent RNA helicase DDX49 [Harpegnathos saltator]
Length = 444
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 52 GHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDE 102
H+Q+L+ +D G+D+ + K YIHR G ARAG+NG +L+ +
Sbjct: 275 NHVQILIATDVAARGLDIHEVELVVNHVIPNVPKEYIHRVGRTARAGRNGMAVSLITPHD 334
Query: 103 DKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSI---ESLRPIYKSEYVESQANRKRK 157
KLL+ + KL + D V + S+ E+ + ++++ E + KRK
Sbjct: 335 VKLLHAIEDAIGTKLTEYKVDDKEIVTILTQISVAKREAEIKLDETDFFEKKMINKRK 392
>gi|303317380|ref|XP_003068692.1| ATP-dependent rRNA helicase RRP3, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240108373|gb|EER26547.1| ATP-dependent rRNA helicase RRP3, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 474
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 51/126 (40%), Gaps = 34/126 (26%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ------- 55
I K K IYLI LL G+ I+F +V + + R G H Q
Sbjct: 269 IIPHKHKDIYLIYLLNEFPGQSVIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARL 328
Query: 56 ------------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
+LV +D G+D+ + KTYIHR G ARAG++G
Sbjct: 329 GALGKFRSRSRNILVATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRA 388
Query: 95 FTLLPK 100
F+L+ +
Sbjct: 389 FSLVTQ 394
>gi|378754810|gb|EHY64839.1| hypothetical protein NERG_02242 [Nematocida sp. 1 ERTm2]
Length = 421
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 44/140 (31%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPK--------------------------TLK 46
K K +YL ++ NLG K IVF + + + T++
Sbjct: 229 KYKEMYLYSIVHNLGSRKCIVFVKTCITAERIERILRFLGESVCSIHGNKTQDIRTETIE 288
Query: 47 AFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
FR +G +L+ +D + GMD++ I K YIHR G RAG+ G TL
Sbjct: 289 MFR-RGKHSILISTDVVARGMDMDGIKVIINYDMPDGHKEYIHRIGRTGRAGEVGSSITL 347
Query: 98 LPKDEDKLLYMFQVKRFKKL 117
+ + + V F+KL
Sbjct: 348 VTQ--------YDVDDFRKL 359
>gi|440740503|ref|ZP_20919985.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens
BRIP34879]
gi|440376319|gb|ELQ12994.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens
BRIP34879]
Length = 445
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 54 MQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDEDK 104
+Q+LV +D G+D+E + + YIHR G RAG G +L+ DE
Sbjct: 295 VQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVN 354
Query: 105 LLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L ++ + L + + D P H +P +
Sbjct: 355 MLSAIEMLTRQTLTRTMEPDFEPEHRVPDTD 385
>gi|402831197|ref|ZP_10879889.1| DEAD/DEAH box helicase [Capnocytophaga sp. CM59]
gi|402282894|gb|EJU31421.1| DEAD/DEAH box helicase [Capnocytophaga sp. CM59]
Length = 581
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 19/98 (19%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAGQNGHCF 95
+K FR K +Q+LV +D G+DV+ + I+TY HR+G RAG++G
Sbjct: 285 MKGFRAK-QIQMLVATDVAARGIDVDDITHVIHYQLPDEIETYTHRSGRTGRAGKSGVSM 343
Query: 96 TLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPS 133
+L K E K ++K +K++Q+ + SIPS
Sbjct: 344 VILTKSEAK-----RIKTIEKIIQK----TFEYKSIPS 372
>gi|447918451|ref|YP_007399019.1| putative ATP-dependent RNA helicase [Pseudomonas poae RE*1-1-14]
gi|445202314|gb|AGE27523.1| putative ATP-dependent RNA helicase [Pseudomonas poae RE*1-1-14]
Length = 445
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 54 MQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDEDK 104
+Q+LV +D G+D+E + + YIHR G RAG G +L+ DE
Sbjct: 295 VQILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVN 354
Query: 105 LLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L ++ + L + + D P H +P +
Sbjct: 355 MLSAIEMLTRQTLTRTMEPDFEPEHRVPDTD 385
>gi|28211493|ref|NP_782437.1| ATP-dependent RNA helicase [Clostridium tetani E88]
gi|28203934|gb|AAO36374.1| ATP-dependent RNA helicase [Clostridium tetani E88]
Length = 386
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 35 ASSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPR 85
+SS + K L+ FR G +Q+LV SD G+D++ ++I K Y+HR G
Sbjct: 276 SSSKKDRQKALEGFRS-GKLQLLVASDIAARGLDIKNVSHIFNLDLPSDPKEYLHRVGRT 334
Query: 86 ARAGQNGHCFTLLPKDEDKLLYMFQ 110
+R G+ G +++ E L+ ++
Sbjct: 335 SRTGETGTAISIVTDKELSLIKKYE 359
>gi|220923247|ref|YP_002498549.1| DEAD/DEAH box helicase [Methylobacterium nodulans ORS 2060]
gi|219947854|gb|ACL58246.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans
ORS 2060]
Length = 465
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 10/75 (13%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCF 95
L AFR G + +LV SD G+D+ +++ + Y+HR G RAG+NG F
Sbjct: 288 LDAFR-SGEIPLLVASDVAARGLDIPAVSHVFNFDVPHHAEDYVHRIGRTGRAGRNGSAF 346
Query: 96 TLLPKDEDKLLYMFQ 110
TL+ + ++K L +
Sbjct: 347 TLVARGDEKALAAIE 361
>gi|408830074|ref|ZP_11214964.1| ATP-dependent RNA helicase, partial [Streptomyces somaliensis DSM
40738]
Length = 558
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KT++HR G RAG +G
Sbjct: 261 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTFLHRVGRTGRAGAHGT 319
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 320 AITLVDWDD 328
>gi|219116929|ref|XP_002179259.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409150|gb|EEC49082.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 476
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 13/107 (12%)
Query: 18 YLIPLLRNLGGEKFIVFASSVANSPK-TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI- 75
Y+ LL G + +++ + + K L AFR G +LV +D G+DV ++
Sbjct: 284 YVTTLLIAAGFDAVMIYGTLDQEARKINLAAFR-SGKRPILVTTDVAARGIDVPLIDHVI 342
Query: 76 --------KTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRF 114
K ++HR+G ARAG+ G+C+ L+ DE L YM ++ F
Sbjct: 343 HYHFPSSPKLFVHRSGRAARAGRIGYCWGLIEPDE--LPYMIELHLF 387
>gi|451845363|gb|EMD58676.1| hypothetical protein COCSADRAFT_265142 [Cochliobolus sativus
ND90Pr]
Length = 706
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 12/93 (12%)
Query: 19 LIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAY---- 74
L+P +N K + A + S K LK+F G +++L+ SDA + G+D+ +
Sbjct: 559 LMPGFKNY--LKTMTRALTADASRKLLKSF-SSGAVKILIASDAASRGLDIPDITHVINY 615
Query: 75 -----IKTYIHRAGPRARAGQNGHCFTLLPKDE 102
I +Y+HR G ARAG+ G +TL K E
Sbjct: 616 DLPTSITSYVHRVGRTARAGKAGQAWTLFSKTE 648
>gi|114563875|ref|YP_751389.1| DEAD/DEAH box helicase [Shewanella frigidimarina NCIMB 400]
gi|114335168|gb|ABI72550.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
NCIMB 400]
Length = 428
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 13/124 (10%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+ F+ G +QVL+ +D G+D+E+ + Y+HR G RAG+ G
Sbjct: 294 RVLEGFKA-GDIQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGL 352
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQAN 153
TLL DE + + K +L ++ + +P S +E +P+ K E
Sbjct: 353 ALTLLSHDEYHHFSVIEKKNQIRLEREQVNGFEADDVVPESVLEQPKPMAKP---EGSGK 409
Query: 154 RKRK 157
+KRK
Sbjct: 410 KKRK 413
>gi|120556730|ref|YP_961081.1| DEAD/DEAH box helicase [Marinobacter aquaeolei VT8]
gi|120326579|gb|ABM20894.1| DEAD/DEAH box helicase domain protein [Marinobacter aquaeolei VT8]
Length = 443
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 19/118 (16%)
Query: 52 GHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDE 102
G ++VLV +D G+D+++ + + Y+HR G RAG++GH +L+ DE
Sbjct: 291 GEVRVLVATDIAARGLDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADE 350
Query: 103 DKLLYMFQVKRFKKLLQQADHDSC-PVHSIPSSSIESLRPIYKSEYVESQANRKRKIG 159
KLL + K KK L + + + P +++P L+P K++ S+A +R G
Sbjct: 351 GKLLAGIE-KLIKKQLPRKEVEGFEPKNNLP------LKPKAKAD--PSKARNRRPQG 399
>gi|390594629|gb|EIN04039.1| DEAD-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 636
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 18/88 (20%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCF 95
L+ F+ + + +LVCSD + GMD+ ++ + Y+HR G ARAG+ G +
Sbjct: 522 LEGFKAR-KIDMLVCSDLVARGMDISHVEHVVSYDAPVDVRKYVHRVGRTARAGRKGCAW 580
Query: 96 TLLPKDEDKLLYMFQVKRFKKLLQQADH 123
+L+ + E + FK++L++ADH
Sbjct: 581 SLVEEQE--------ARWFKEMLREADH 600
>gi|346318712|gb|EGX88314.1| ATP-dependent rRNA helicase RRP3 [Cordyceps militaris CM01]
Length = 480
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 36/140 (25%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPK--------------------------TLK 46
K K YLI ++ G+ IVF +V + + L
Sbjct: 283 KRKDTYLIHIINEFAGKSCIVFTRTVYETQRCAVLLRTLGFGAIPLHGQLSQSARLGALN 342
Query: 47 AFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
FRG G ++LV +D G+D+ + I KTYIHR G ARAG++G ++
Sbjct: 343 KFRG-GTREILVATDVAARGLDIPKVDVILNYDIPSDSKTYIHRVGRTARAGKSGVAISI 401
Query: 98 LPKDEDKLLYMFQVKRFKKL 117
+ + + +L + KKL
Sbjct: 402 VTQFDIELFTRIEAALGKKL 421
>gi|255524857|ref|ZP_05391806.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
P7]
gi|255511427|gb|EET87718.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
P7]
Length = 375
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 11/83 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ +KAFR G Q L+ +D + G+D+ ++I ++YIHR G RAG+ G+
Sbjct: 280 RIMKAFRN-GDFQYLIATDVASRGLDISGVSHIYNYDIPESAESYIHRIGRTGRAGEEGY 338
Query: 94 -CFTLLPKDEDKLLYMFQVKRFK 115
C + PKD +L + + +FK
Sbjct: 339 TCLFIDPKDRLRLEEIEKAIKFK 361
>gi|294949064|ref|XP_002786034.1| ATP-dependent RNA helicase DBP6, putative [Perkinsus marinus ATCC
50983]
gi|239900142|gb|EER17830.1| ATP-dependent RNA helicase DBP6, putative [Perkinsus marinus ATCC
50983]
Length = 559
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 27/118 (22%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVCSD G+D + ++ YIHR G RAG+ G
Sbjct: 387 RLLEAFR-TGRIHVLVCSDVAARGLDFREVDHVLQYDVPNNVQGYIHRCGRAGRAGRQGC 445
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS--EYVE 149
T+L QVK FK +L++ + ++ +E ++P+ + EY E
Sbjct: 446 SSTILVGK--------QVKHFKDMLREEE-------AVTMDKLEQMKPVVEDIPEYQE 488
>gi|116071349|ref|ZP_01468618.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
gi|116066754|gb|EAU72511.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
Length = 467
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+ F+ G +++LV +D G+D+ + Y+ + Y+HR G RAG+NGH
Sbjct: 316 RALEGFKN-GDVKILVATDIAARGIDIHQLPYVINLDLPNVAEDYVHRIGRTGRAGENGH 374
Query: 94 CFTLLPKDEDKLLYMFQ 110
+L+ +E LL +
Sbjct: 375 AISLVAAEEALLLKAIE 391
>gi|116252340|ref|YP_768178.1| cold-shock DEAD-box protein A [Rhizobium leguminosarum bv. viciae
3841]
gi|115256988|emb|CAK08082.1| putative cold-shock DeaD-box protein A (ATP-dependent RNA helicase)
[Rhizobium leguminosarum bv. viciae 3841]
Length = 521
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 19/111 (17%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
TL++FR G++Q+LV SD G+D+ +++ + Y+HR G RAG++G
Sbjct: 294 TLQSFR-DGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAA 352
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLL-QQADHDSCPVHSIP---SSSIESLRP 141
FTL+ K + K V +KL+ Q+ + S + S+P S +S RP
Sbjct: 353 FTLVTKRDTKF-----VDAIEKLIGQKVEWLSGDLTSLPPPAEDSRDSERP 398
>gi|386818532|ref|ZP_10105750.1| DEAD/DEAH box helicase domain protein [Thiothrix nivea DSM 5205]
gi|386423108|gb|EIJ36943.1| DEAD/DEAH box helicase domain protein [Thiothrix nivea DSM 5205]
Length = 446
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 19/121 (15%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ + +++VLV +D G+D+++ ++ + Y+HR G RAG +G
Sbjct: 284 KALADFK-QNNIRVLVATDIAARGIDIDQLPHVVNFELPNVSEDYVHRIGRTGRAGASGE 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQAN 153
+L+ +E K L K +KL++Q + P +P+ S RP +++ +++A+
Sbjct: 343 AISLVEPEEHKYL-----KGIEKLIKQ----TLPREELPAISAAPERPRTEAKTADAEAD 393
Query: 154 R 154
+
Sbjct: 394 K 394
>gi|56119032|ref|NP_001007854.1| probable ATP-dependent RNA helicase DDX47 [Gallus gallus]
gi|53130308|emb|CAG31483.1| hypothetical protein RCJMB04_6o10 [Gallus gallus]
Length = 453
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 34/129 (26%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 248 SKFKDSYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSL 307
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 308 NKFKAKARSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITF 367
Query: 98 LPKDEDKLL 106
+ + + +L
Sbjct: 368 VTQYDVELF 376
>gi|365539790|ref|ZP_09364965.1| ATP-dependent RNA helicase [Vibrio ordalii ATCC 33509]
Length = 465
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 14/103 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G +++LV +D G+D+++ + + Y+HR G RAG G+
Sbjct: 284 KALANFK-SGEIRILVATDIAARGIDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGAEGN 342
Query: 94 CFTLLPKDEDKLLYMFQVKRF-KKLLQQADHDS-CPVHSIPSS 134
+L+ DE K MF ++R + LL++ + + PV+ +P+S
Sbjct: 343 AISLVCADEAK--DMFAIERLTQNLLERIEIEGFAPVNKLPAS 383
>gi|196003440|ref|XP_002111587.1| hypothetical protein TRIADDRAFT_23405 [Trichoplax adhaerens]
gi|190585486|gb|EDV25554.1| hypothetical protein TRIADDRAFT_23405, partial [Trichoplax
adhaerens]
Length = 463
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 11/73 (15%)
Query: 45 LKAFR--GKGHMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGH 93
L+AF KG + +LV +D G+D+E A K Y+HR G ARAGQ G
Sbjct: 302 LEAFNRFKKGEIGILVATDLAARGLDIEGVRTVINYNIPATTKQYVHRVGRTARAGQFGR 361
Query: 94 CFTLLPKDEDKLL 106
TL+ + E KLL
Sbjct: 362 SITLVVEKERKLL 374
>gi|452002280|gb|EMD94738.1| hypothetical protein COCHEDRAFT_1048087, partial [Cochliobolus
heterostrophus C5]
Length = 604
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 10/71 (14%)
Query: 41 SPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAGQN 91
S K LK+F G +++L+ SDA + G+D+ + I +Y+HR G ARAG+
Sbjct: 522 SRKLLKSF-SSGTIKILIASDAASRGLDIPDITHVINYDLPTSITSYVHRVGRTARAGKA 580
Query: 92 GHCFTLLPKDE 102
G +TL K E
Sbjct: 581 GQAWTLFSKTE 591
>gi|388851453|emb|CCF54855.1| related to DBP6-ATP-dependent RNA helicase [Ustilago hordei]
Length = 869
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 17/79 (21%)
Query: 50 GKGHMQVLVCSDAMTSGMDVERAAYIKTY---------IHRAGPRARAGQNGHCFTLLPK 100
G+G + +LVCSD ++ G+D+ ++ +Y +HR G ARAG++G +TL+ +
Sbjct: 742 GQGEIDLLVCSDLISRGIDLPTVEHVVSYDAPIDPAKYVHRVGRTARAGKHGDAWTLVEE 801
Query: 101 DEDKLLYMFQVKRFKKLLQ 119
E + FKK+++
Sbjct: 802 QE--------ARHFKKMVR 812
>gi|374587697|ref|ZP_09660789.1| DEAD/DEAH box helicase domain protein [Leptonema illini DSM 21528]
gi|373876558|gb|EHQ08552.1| DEAD/DEAH box helicase domain protein [Leptonema illini DSM 21528]
Length = 497
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 25/113 (22%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
KT++ FR +G +++LV +D G+DV +++ ++YIHR G RAG++G
Sbjct: 288 KTIRDFR-QGRVKILVATDVAARGLDVADVSHVFNYHIPGNSESYIHRIGRTGRAGRSGE 346
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSE 146
T + E + L M L+QA V I +SI +LR + + E
Sbjct: 347 AITFVAPGEMRRLRM---------LKQA------VGDIKPASIPTLRDLRRRE 384
>gi|315637497|ref|ZP_07892707.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
gi|315478215|gb|EFU68938.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
Length = 435
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 24/125 (19%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G ++VLV +D G+D+E+ ++ + Y+HR G RAG NG
Sbjct: 285 KALDDFKN-GKVRVLVATDIAARGIDIEQLPHVVNFELPNVAEDYVHRIGRTGRAGNNGI 343
Query: 94 CFTLLPKDEDKLLYMFQVKRF-KKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQA 152
+L+ DE + Y+F ++R K+ +++ + + V+ P K+E + +++
Sbjct: 344 AISLVCVDEHE--YLFGIERLIKQKIKKVEINGFKVN-----------PNIKAEPIGNRS 390
Query: 153 NRKRK 157
NR K
Sbjct: 391 NRGNK 395
>gi|425780841|gb|EKV18837.1| DEAD/DEAH box helicase, putative [Penicillium digitatum PHI26]
gi|425783078|gb|EKV20947.1| DEAD/DEAH box helicase, putative [Penicillium digitatum Pd1]
Length = 809
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 68/135 (50%), Gaps = 16/135 (11%)
Query: 32 IVFASSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRA 82
I+ ++ + S KTL A+R +G + V+V +D + G+D++ + I TY+HR
Sbjct: 678 IIKSNKSSASRKTLTAYR-QGRISVIVATDRASRGLDLQSLTHVINYDIPTSITTYVHRV 736
Query: 83 GPRARAGQNGHCFTLLPKDEDKLLY-MFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRP 141
G ARAG+ G ++L+ E + ++ + ++ D I + +++SL+P
Sbjct: 737 GRTARAGRAGSAWSLVAHREGRWFANEIAASVDGRITRTSNIDRV---QIKADALDSLKP 793
Query: 142 IYKS--EYVESQANR 154
Y + E +E + R
Sbjct: 794 KYATALEKLEQEVKR 808
>gi|403350666|gb|EJY74800.1| DEAD/DEAH box helicase family protein [Oxytricha trifallax]
Length = 795
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 13/86 (15%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMD---------VERAAYIKTYIHRAGPRARAGQNGHC 94
TLK F+ + VLV +D + G+D VE +++YIHRAG ARAG+ G C
Sbjct: 393 TLKRFK-ENKFSVLVATDVASRGLDIPNVDLVIQVEPPNDVESYIHRAGRTARAGRTGTC 451
Query: 95 FTLLPKDEDKLLYMFQVK---RFKKL 117
T K ++ M + K +F+K+
Sbjct: 452 ITFYGKKHQYMINMIEQKAGIKFQKI 477
>gi|332375408|gb|AEE62845.1| unknown [Dendroctonus ponderosae]
Length = 469
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
+K K +YL+ +L G F+VF S+ N+ +T R G H Q
Sbjct: 262 AKFKDVYLVHILNENAGNSFMVFCSTCNNTIRTALLLRNLGFTAVPLHGQMSQNKRLAAL 321
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 322 TKFKAKNRSILISTDVASRGLDIPHVDIVINFDIPMHSKDYIHRVGRTARAGRSGKAITF 381
Query: 98 LPK 100
+ +
Sbjct: 382 VTQ 384
>gi|162148769|ref|YP_001603230.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter diazotrophicus
PAl 5]
gi|161787346|emb|CAP56941.1| putative ATP-dependent RNA helicase rhlE [Gluconacetobacter
diazotrophicus PAl 5]
Length = 390
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 10/64 (15%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL FR +G + VLV +D M G+DVE A + +TYIHR G ARAG+ G
Sbjct: 302 RTLDDFR-RGRLLVLVATDVMARGIDVEGVALVVNFDIPEQPETYIHRIGRTARAGRRGT 360
Query: 94 CFTL 97
+L
Sbjct: 361 ALSL 364
>gi|335420259|ref|ZP_08551297.1| DEAD box family ATP-dependent RNA helicase [Salinisphaera
shabanensis E1L3A]
gi|334894618|gb|EGM32803.1| DEAD box family ATP-dependent RNA helicase [Salinisphaera
shabanensis E1L3A]
Length = 437
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 10/73 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L+ F+ G +QVLV +D G+D+E ++ + Y+HR G RAG+ G
Sbjct: 281 KALEGFK-DGKIQVLVATDIAARGIDIESLPHVVNYELPNVSEDYVHRIGRTGRAGEAGE 339
Query: 94 CFTLLPKDEDKLL 106
+L+ DE KLL
Sbjct: 340 AVSLVGPDERKLL 352
>gi|221195199|ref|ZP_03568255.1| dead/deah box helicase [Atopobium rimae ATCC 49626]
gi|221185102|gb|EEE17493.1| dead/deah box helicase [Atopobium rimae ATCC 49626]
Length = 457
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 11/103 (10%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANS-PKTLKAFRGKGHMQVLVCSDAMTSGMD 68
C +KL+ + L N G + ++ A + + L FR G +Q+LV +D M+ G+D
Sbjct: 292 CRTKLRVDSVYAALNNAGFKVDVMHADRPQGARTRALTKFR-NGTIQILVATDVMSRGID 350
Query: 69 VERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDE 102
V+ + + Y+HR G RAG G FT + DE
Sbjct: 351 VQGIDAVVNFDVPLDPEDYVHRIGRTGRAGSAGQAFTFMAPDE 393
>gi|317495429|ref|ZP_07953798.1| DEAD/DEAH box helicase [Gemella morbillorum M424]
gi|316914488|gb|EFV35965.1| DEAD/DEAH box helicase [Gemella morbillorum M424]
Length = 443
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 10/59 (16%)
Query: 57 LVCSDAMTSGMDVERAAYIKTY---------IHRAGPRARAGQNGHCFTLL-PKDEDKL 105
+V SD M+ G+D+E +++ Y IHRAG RAG NG C T+ KDE+KL
Sbjct: 296 VVASDLMSRGIDIEGVSHVINYNIPNDLDFFIHRAGRTGRAGLNGDCITIYNNKDEEKL 354
>gi|302558562|ref|ZP_07310904.1| ATP-dependent RNA helicase DeaD [Streptomyces griseoflavus Tu4000]
gi|302476180|gb|EFL39273.1| ATP-dependent RNA helicase DeaD [Streptomyces griseoflavus Tu4000]
Length = 868
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG G
Sbjct: 335 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGAKGT 393
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 394 AITLVDWDD 402
>gi|347541119|ref|YP_004848545.1| ATP-dependent RNA helicase RhlE [Pseudogulbenkiania sp. NH8B]
gi|345644298|dbj|BAK78131.1| ATP-dependent RNA helicase RhlE [Pseudogulbenkiania sp. NH8B]
Length = 455
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 15/87 (17%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL AF+ G ++VLV +D G+D+ Y+ + Y+HR G RAG +G
Sbjct: 288 ETLTAFK-NGEVKVLVATDVAARGLDISELPYVVNFELPNAPEDYVHRIGRTGRAGASGV 346
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQ 120
+L+ +DE K Q++ +KL +Q
Sbjct: 347 AISLMGQDEGK-----QLEAIEKLTRQ 368
>gi|315499759|ref|YP_004088562.1| dead/deah box helicase domain protein [Asticcacaulis excentricus CB
48]
gi|315417771|gb|ADU14411.1| DEAD/DEAH box helicase domain protein [Asticcacaulis excentricus CB
48]
Length = 501
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 14/81 (17%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
KTL AFR G +++LV SD G+D+ +++ Y+HR G RAG+ G
Sbjct: 291 KTLDAFRS-GELKLLVASDVAARGLDIPSVSHVFNFDVPHHADDYVHRIGRTGRAGRTGE 349
Query: 94 CFTLL-PKDE---DKLLYMFQ 110
+ +L P DE DK+L + +
Sbjct: 350 AYLILAPNDEKNYDKVLKLIK 370
>gi|387816135|ref|YP_005431630.1| RNA helicase [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|381341160|emb|CCG97207.1| RNA helicase [Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 443
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 19/118 (16%)
Query: 52 GHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDE 102
G ++VLV +D G+D+++ + + Y+HR G RAG++GH +L+ DE
Sbjct: 291 GEVRVLVATDIAARGLDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADE 350
Query: 103 DKLLYMFQVKRFKKLLQQADHDSC-PVHSIPSSSIESLRPIYKSEYVESQANRKRKIG 159
KLL + K KK L + + + P +++P L+P K++ S+A +R G
Sbjct: 351 GKLLAGIE-KLIKKQLPRKEVEGFEPKNNLP------LKPKAKAD--PSKARNRRPQG 399
>gi|260433500|ref|ZP_05787471.1| putative ATP-dependent RNA helicase RhlE [Silicibacter
lacuscaerulensis ITI-1157]
gi|260417328|gb|EEX10587.1| putative ATP-dependent RNA helicase RhlE [Silicibacter
lacuscaerulensis ITI-1157]
Length = 476
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 21/130 (16%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL+ FR +G ++ LV SD G+DV +++ + Y+HR G RAG+ G
Sbjct: 293 RTLEGFR-EGSLRFLVASDVAARGLDVPSVSHVFNFDVPSHPEDYVHRIGRTGRAGREGK 351
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS------EY 147
TL ++K L + K +K + + D+ PV + P+ + E +P KS +
Sbjct: 352 AITLCTARDEKALEAIE-KLIQKEIPRLDN---PVEAEPAEA-EDKKPEKKSRASTRKDE 406
Query: 148 VESQANRKRK 157
ES+A RK
Sbjct: 407 RESEAKDTRK 416
>gi|152992886|ref|YP_001358607.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
gi|151424747|dbj|BAF72250.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
Length = 457
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 12/83 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L +F+ ++VLV +D G+D+++ ++ + Y+HR G RAGQ+G
Sbjct: 285 KALASFKA-NEIRVLVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGQSGE 343
Query: 94 CFTLLPKDEDKLLYMFQVKRFKK 116
+L+ DE KLL F +++F K
Sbjct: 344 AVSLVCVDEHKLL--FDIEKFIK 364
>gi|424939169|ref|ZP_18354932.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa
NCMG1179]
gi|346055615|dbj|GAA15498.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa
NCMG1179]
Length = 163
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 52 GHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDE 102
G + +LV +D G+D+E + + Y+HR G RAG +G +L+ DE
Sbjct: 7 GEVDLLVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADE 66
Query: 103 DKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+LL + + L ++ + D P H +P ++
Sbjct: 67 VELLAAIETLIGQTLQRREEPDFEPEHRVPQTA 99
>gi|302536730|ref|ZP_07289072.1| ATP-dependent RNA helicase [Streptomyces sp. C]
gi|302445625|gb|EFL17441.1| ATP-dependent RNA helicase [Streptomyces sp. C]
Length = 596
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KT++HR G RAG G
Sbjct: 356 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQTPEDEKTFLHRVGRTGRAGNKGT 414
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 415 AVTLVDWDD 423
>gi|254381813|ref|ZP_04997176.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1]
gi|194340721|gb|EDX21687.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1]
Length = 518
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 15/123 (12%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KT++HR G RAG G
Sbjct: 329 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQAPEDEKTFLHRVGRTGRAGNKGI 387
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQAN 153
TL+ D+ + + + K L+ HD +S E + ++ + +A
Sbjct: 388 AVTLVDWDD-----IPRWQLINKALELDFHDPVETYSTSPHLFEEMNIPAGTKGILPRAE 442
Query: 154 RKR 156
R R
Sbjct: 443 RTR 445
>gi|239990555|ref|ZP_04711219.1| putative ATP-dependent RNA helicase, partial [Streptomyces
roseosporus NRRL 11379]
Length = 519
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG G
Sbjct: 234 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVVNYQSPEDEKTYLHRIGRTGRAGAKGV 292
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 293 AITLVDWDD 301
>gi|301110278|ref|XP_002904219.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262096345|gb|EEY54397.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 758
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 16/138 (11%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGH 93
+ L+ FR G + VL+C+D G+DV E I TY+HR G ARAG+NG
Sbjct: 417 EALQKFR-DGTVDVLLCTDIAARGIDVRGVHAVINYEMPKDITTYVHRVGRTARAGRNGR 475
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESL----RPIYKSEYVE 149
TL E + L M QV R + ++ PV + + IES+ + + E +E
Sbjct: 476 AVTL--TSESRRLVMKQVSRHCQGFVKSRAVPDPVIAQWKARIESMLEDVKLVMHEETLE 533
Query: 150 SQANRKRKIGFKLSRMVK 167
+ K + + ++K
Sbjct: 534 KRMREAEKEATRATNLLK 551
>gi|170725067|ref|YP_001759093.1| DEAD/DEAH box helicase [Shewanella woodyi ATCC 51908]
gi|169810414|gb|ACA84998.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
51908]
Length = 494
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 24/108 (22%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G ++VLV +D G+D+++ + + Y+HR G RAG NG
Sbjct: 284 KALANFK-SGEVRVLVATDIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGANGQ 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRP 141
+L+ DE KLL + ++L++Q +IP +E P
Sbjct: 343 AVSLVSGDESKLL-----RDIERLIKQ---------NIPRKEVEGFVP 376
>gi|427702007|ref|YP_007045229.1| DNA/RNA helicase [Cyanobium gracile PCC 6307]
gi|427345175|gb|AFY27888.1| DNA/RNA helicase, superfamily II [Cyanobium gracile PCC 6307]
Length = 420
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L F+ G ++VLV +D G+D+ + ++ + Y+HR G RAGQNGH
Sbjct: 289 RALAEFK-SGEVRVLVATDIAARGIDIHQLPHVVNLDLPNVAEDYVHRIGRTGRAGQNGH 347
Query: 94 CFTLLPKDEDKLLYMFQ 110
+L+ +E +LL +
Sbjct: 348 AISLVAAEEHELLRAIE 364
>gi|358449520|ref|ZP_09160004.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
manganoxydans MnI7-9]
gi|357226275|gb|EHJ04756.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
manganoxydans MnI7-9]
Length = 440
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 11/91 (12%)
Query: 52 GHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDE 102
G ++VLV +D G+D+++ + + Y+HR G RAG++GH +L+ DE
Sbjct: 291 GEVRVLVATDIAARGLDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADE 350
Query: 103 DKLLYMFQVKRFKKLLQQADHDSC-PVHSIP 132
K+L + + KK L + + + P +++P
Sbjct: 351 GKMLAGIE-RLIKKQLPRTEVEGFEPTNNLP 380
>gi|224826248|ref|ZP_03699350.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
gi|224601349|gb|EEG07530.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
Length = 456
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 15/87 (17%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL AF+ G ++VLV +D G+D+ Y+ + Y+HR G RAG +G
Sbjct: 288 ETLTAFK-NGEVKVLVATDVAARGLDISELPYVVNFELPNAPEDYVHRIGRTGRAGASGV 346
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQ 120
+L+ +DE K Q++ +KL +Q
Sbjct: 347 AISLMGQDEGK-----QLEAIEKLTRQ 368
>gi|453055083|gb|EMF02530.1| putative ATP-dependent RNA helicase [Streptomyces mobaraensis NBRC
13819 = DSM 40847]
Length = 1029
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DV+ ++ KTY+HR G RAG++G
Sbjct: 268 QALRAFR-NGKVDVLVCTDVAARGIDVDNVTHVVNYQTPEDEKTYLHRVGRTGRAGKSGT 326
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 327 AVTLVDWDD 335
>gi|386284070|ref|ZP_10061293.1| ATP-dependent RNA helicase [Sulfurovum sp. AR]
gi|385344973|gb|EIF51686.1| ATP-dependent RNA helicase [Sulfurovum sp. AR]
Length = 429
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 24/108 (22%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L AF+ G ++VLV +D G+D+++ ++ + Y+HR G RAG++G
Sbjct: 285 KALAAFKANG-IRVLVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGKSGE 343
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRP 141
+L+ DE +LL +++F KL IP I + RP
Sbjct: 344 AVSLVCIDEHELLK--NIEKFIKL------------EIPKVDIPAFRP 377
>gi|375144587|ref|YP_005007028.1| DEAD/DEAH box helicase [Niastella koreensis GR20-10]
gi|361058633|gb|AEV97624.1| DEAD/DEAH box helicase domain protein [Niastella koreensis GR20-10]
Length = 380
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 38/135 (28%)
Query: 4 NLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANSP--------------------- 42
L+ + E++ P+ L L++N G ++ +VF S+V +
Sbjct: 221 QLAYHVTEARKGPL-LRYLIKNEGMQQVLVFTSAVRTADNLTGKLIKNGIQAASLHGHLS 279
Query: 43 -----KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARA 88
KTL+ F+ +G ++VLV SD + G+D+E+ + K YIHR G RA
Sbjct: 280 QTGRLKTLQRFK-EGKLRVLVASDLASRGIDIEQLPIVINYELPRSPKDYIHRIGRTGRA 338
Query: 89 GQNGHCFTLL-PKDE 102
G +G +L+ PKD+
Sbjct: 339 GASGRAVSLICPKDQ 353
>gi|358055147|dbj|GAA98916.1| hypothetical protein E5Q_05604 [Mixia osmundae IAM 14324]
Length = 2128
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 18/90 (20%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L AF G + +L+CSD + G+D+ A++ + Y+HR G ARAG+ G
Sbjct: 673 KILAAFVA-GEIDMLICSDIIARGIDLPSVAHVISYDVPVDMRKYVHRVGRTARAGRPGD 731
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123
++L+ E FK LL A H
Sbjct: 732 AWSLVESQEANF--------FKALLTDAQH 753
>gi|385333348|ref|YP_005887299.1| DEAD/DEAH box helicase [Marinobacter adhaerens HP15]
gi|311696498|gb|ADP99371.1| DEAD/DEAH box helicase domain protein [Marinobacter adhaerens HP15]
Length = 440
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 11/91 (12%)
Query: 52 GHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDE 102
G ++VLV +D G+D+++ + + Y+HR G RAG++GH +L+ DE
Sbjct: 291 GEVRVLVATDIAARGLDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADE 350
Query: 103 DKLLYMFQVKRFKKLLQQADHDSC-PVHSIP 132
K+L + + KK L + + + P +++P
Sbjct: 351 GKMLAGIE-RLIKKQLPRTEVEGFEPTNNLP 380
>gi|197337698|ref|YP_002157744.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
gi|197314950|gb|ACH64399.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
Length = 496
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G ++VLV +D G+D+E+ + + Y+HR G RAG G
Sbjct: 284 KALANFKS-GQVRVLVATDIAARGLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGK 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIES 138
+ + +DE K L+ + K L + PV+ +P S +++
Sbjct: 343 AISFVSEDEAKELFAIERLIQKVLPRHVLEGFEPVNKVPESKLDT 387
>gi|413934954|gb|AFW69505.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 432
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 37/174 (21%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKA---FRGKGHMQVLVCSDAMTSG 66
CES L +LRNLG + + S + K L A F+ K +L+C+D + G
Sbjct: 251 CESTR---LLALMLRNLGLKAMSI--SGQMSQDKRLGALNRFKAK-DCNILICTDVASRG 304
Query: 67 MDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKL 117
+D++ + K Y+HR G ARAG++G+ +L+ + E + + + KK+
Sbjct: 305 LDIQGVDMVINYDIPMNSKDYVHRVGRTARAGRSGYAVSLVNQYEAQWFVLIEQLLGKKI 364
Query: 118 LQ-QADHDS------------------CPVHSIPSSSIESLRPIYKSEYVESQA 152
Q + D D CP + S+ LR + ++YV+ A
Sbjct: 365 DQCKVDRDEVLILKGPISDAKRIALTVCPPKTSVFDSVNLLRHVCNTKYVQKDA 418
>gi|402297516|ref|ZP_10817285.1| ATP-dependent RNA helicase [Bacillus alcalophilus ATCC 27647]
gi|401727307|gb|EJT00499.1| ATP-dependent RNA helicase [Bacillus alcalophilus ATCC 27647]
Length = 379
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 11/73 (15%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ LK F+ +G + +LV +D + G+DVE +I +Y+HRAG R G+ G
Sbjct: 283 RALKQFK-EGEIHILVATDVASRGLDVEEVTHIIQLDPAADPDSYLHRAGRTGRMGKEGK 341
Query: 94 CFTLLP-KDEDKL 105
TL+ KDE K+
Sbjct: 342 VLTLMSHKDEYKI 354
>gi|390941064|ref|YP_006404801.1| DNA/RNA helicase [Sulfurospirillum barnesii SES-3]
gi|390194171|gb|AFL69226.1| DNA/RNA helicase, superfamily II [Sulfurospirillum barnesii SES-3]
Length = 417
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 16/124 (12%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+G G ++VLV +D G+D+++ ++ + Y+HR G RAG NG
Sbjct: 285 KALADFKG-GSIKVLVATDIAARGLDIDQLPHVVNLELPNIAEDYVHRIGRTGRAGNNGE 343
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQAN 153
+L+ DE + L K +KL++++ P SI+++ PI + + Q
Sbjct: 344 AISLVCVDEFEYL-----KGIEKLIKRSFEHEIIEGFEPDPSIKAV-PIQQGRGAKPQGQ 397
Query: 154 RKRK 157
KR+
Sbjct: 398 PKRR 401
>gi|422022161|ref|ZP_16368669.1| ATP-dependent RNA helicase RhlE [Providencia sneebia DSM 19967]
gi|414096654|gb|EKT58310.1| ATP-dependent RNA helicase RhlE [Providencia sneebia DSM 19967]
Length = 438
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 27/123 (21%)
Query: 52 GHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDE 102
G ++VLV +D G+D+E+ Y+ + Y+HR G RA G +L+ DE
Sbjct: 282 GDIRVLVATDIAARGLDIEQLPYVVNFELPNIAEDYVHRIGRTGRAEATGMAVSLVCVDE 341
Query: 103 DKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLR--PIYKSEYVE--SQANRKRKI 158
KLL K +KLL++ SIP +IE P K+E ++ SQ N R+
Sbjct: 342 IKLL-----KDIEKLLKK---------SIPLMAIEGYEPDPSIKAEPIQNGSQRNNDRRG 387
Query: 159 GFK 161
G K
Sbjct: 388 GEK 390
>gi|282878371|ref|ZP_06287163.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC
35310]
gi|281299557|gb|EFA91934.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC
35310]
Length = 558
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 11/72 (15%)
Query: 52 GHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDE 102
G + VLV +D ++ G+D++ A + + Y+HR G ARA ++G TL+ KD+
Sbjct: 294 GQIDVLVATDILSRGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGAAITLVSKDD 353
Query: 103 DKLLYMFQVKRF 114
+ Y Q+++F
Sbjct: 354 --IYYFQQIEKF 363
>gi|104779961|ref|YP_606459.1| DEAD/DEAH box helicase [Pseudomonas entomophila L48]
gi|95108948|emb|CAK13644.1| putative ATP-dependent RNA helicase, DEAD box family (RhlE)
[Pseudomonas entomophila L48]
Length = 443
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L +F+ + +QVLV +D G+D++ + + Y+HR G RAG
Sbjct: 281 ATRQRALDSFKAR-EVQVLVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE +LL + + L + + D P H +P +
Sbjct: 340 NKGEAISLVCADEVQLLASIETLIRQVLPRHEEPDFIPDHRVPVTD 385
>gi|156544612|ref|XP_001603959.1| PREDICTED: probable ATP-dependent RNA helicase DDX55 homolog
[Nasonia vitripennis]
Length = 591
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 56 VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDEDKLL 106
+L+C+D M G+D+ ++ +++HR G AR G+ G+ LL + ED
Sbjct: 312 LLICTDVMARGIDIPEVDWVIQYDPPSSASSFVHRCGRTARIGKEGNALLLLSETEDA-- 369
Query: 107 YMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSE-YVESQANR 154
Y+ +KR +++ + D C S ++ +R + + + V +ANR
Sbjct: 370 YVDFIKRNQRVEMKQLADQCLDPSFVEECLKCMRQLQQEDRLVFDKANR 418
>gi|114764595|ref|ZP_01443799.1| ATP-dependent RNA helicase RhlE [Pelagibaca bermudensis HTCC2601]
gi|114542971|gb|EAU45991.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. HTCC2601]
Length = 502
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 17/88 (19%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL+ FR +G +++L+ SD G+DV +++ + Y+HR G RAG+ G
Sbjct: 293 RTLEGFR-EGSIRLLIASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGREGK 351
Query: 94 CFTL-LPKDEDKLLYMFQVKRFKKLLQQ 120
FT+ +P+DE + +KLLQ+
Sbjct: 352 AFTIVVPRDEKNF------EDVEKLLQK 373
>gi|256390879|ref|YP_003112443.1| DEAD/DEAH box helicase [Catenulispora acidiphila DSM 44928]
gi|256357105|gb|ACU70602.1| DEAD/DEAH box helicase domain protein [Catenulispora acidiphila DSM
44928]
Length = 854
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 43/120 (35%), Positives = 59/120 (49%), Gaps = 26/120 (21%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSG---------MDVERAAYIKTYIHRAGPRARAGQNGH 93
KTL F+ +G + VLV +D G + V+ A K Y+HRAG ARAG++G
Sbjct: 352 KTLADFK-EGRVPVLVATDVAARGIHVDGIDLVLHVDPAGDPKDYLHRAGRTARAGESGT 410
Query: 94 CFTL-LPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS----IESLRPIYKSEYV 148
TL LPK Q K +LL+QA D+ PSS+ + RP+ +EYV
Sbjct: 411 VVTLVLPK---------QRKSTMRLLEQAGVDAELTRVAPSSAELRELTGGRPV--AEYV 459
>gi|114561793|ref|YP_749306.1| DEAD/DEAH box helicase [Shewanella frigidimarina NCIMB 400]
gi|114333086|gb|ABI70468.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
NCIMB 400]
Length = 421
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 37 SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRAR 87
S A + L AF+ G + LV +D G+D+ Y+ + Y+HR G R
Sbjct: 288 SQAVREQVLAAFKA-GEVTALVATDVAARGLDINELNYVVNMELPFQVEDYVHRIGRTGR 346
Query: 88 AGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQ 120
AG+ G TLL D++ LL + ++L QQ
Sbjct: 347 AGKAGQAITLLSIDDEPLLTKLEAFLDRRLPQQ 379
>gi|423687487|ref|ZP_17662290.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri SR5]
gi|371493270|gb|EHN68873.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri SR5]
Length = 500
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G ++VLV +D G+D+E+ + + Y+HR G RAG G
Sbjct: 284 KALANFKS-GQVRVLVATDIAARGLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGK 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIES 138
+ + +DE K L+ + K L + PV+ +P S +++
Sbjct: 343 AISFVSEDEAKELFAIERLIQKVLPRHVLEGFEPVNKVPESKLDT 387
>gi|59713334|ref|YP_206109.1| RNA helicase [Vibrio fischeri ES114]
gi|59481582|gb|AAW87221.1| RNA helicase [Vibrio fischeri ES114]
Length = 500
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G ++VLV +D G+D+E+ + + Y+HR G RAG G
Sbjct: 284 KALANFKS-GQVRVLVATDIAARGLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGK 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIES 138
+ + +DE K L+ + K L + PV+ +P S +++
Sbjct: 343 AISFVSEDEAKELFAIERLIQKVLPRHVLEGFEPVNKVPESKLDT 387
>gi|332016384|gb|EGI57297.1| Putative ATP-dependent RNA helicase DDX49 [Acromyrmex echinatior]
Length = 461
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Query: 52 GHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDE 102
H+Q+L+ +D G+D+ I K YIHR G ARAG+NG +L+ ++
Sbjct: 305 NHVQILIATDVAARGLDIPTVQLIINHVIPNVPKEYIHRVGRTARAGKNGMSISLITPND 364
Query: 103 DKLLYMFQ 110
KLL+ +
Sbjct: 365 IKLLHAIE 372
>gi|254491257|ref|ZP_05104438.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxidans
DMS010]
gi|224463770|gb|EEF80038.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxydans
DMS010]
Length = 442
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G Q+LV +D G+D+++ ++ + Y+HR G RAG G
Sbjct: 284 KALADFKA-GDKQILVATDIAARGLDIDQLPHVVNFDLPNVAEDYVHRIGRTGRAGATGE 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSI 136
+L+ DE + L+ + K L ++ P H +P+S +
Sbjct: 343 AISLVSADEVEHLWNIERLIGKNLPREVVEGFEPQHDVPASKL 385
>gi|425733846|ref|ZP_18852166.1| DNA/RNA helicase [Brevibacterium casei S18]
gi|425482286|gb|EKU49443.1| DNA/RNA helicase [Brevibacterium casei S18]
Length = 503
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A K LK+FR G + VLV +D G+D++ ++ KTY+HR G RAG
Sbjct: 295 AQREKALKSFR-DGTVDVLVATDVAARGIDIDDVTHVVNFQSPEDEKTYVHRIGRTGRAG 353
Query: 90 QNGHCFTLLPKDE 102
+G TL+ D+
Sbjct: 354 NSGVAVTLVDWDD 366
>gi|336310213|ref|ZP_08565185.1| ATP-dependent RNA helicase RhlE [Shewanella sp. HN-41]
gi|335865943|gb|EGM70934.1| ATP-dependent RNA helicase RhlE [Shewanella sp. HN-41]
Length = 470
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 10/105 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G ++VLV +D G+D+++ + + Y+HR G RAG +G
Sbjct: 284 KALADFK-TGQVRVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQ 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIES 138
+L+ +E KLL + + L ++ PVH++P S + +
Sbjct: 343 AVSLVSSEEIKLLNDIERLINRVLDREMVEGFSPVHALPESRLNA 387
>gi|195590910|ref|XP_002085187.1| GD12444 [Drosophila simulans]
gi|194197196|gb|EDX10772.1| GD12444 [Drosophila simulans]
Length = 687
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 50/159 (31%)
Query: 5 LSPQIC--ESKLKPIYLIPLLRNLGGEKFIVFASSVANSPK------------------- 43
L+ Q C E +LKP+ + L+ ++F+ F +S + +
Sbjct: 419 LTEQYCVTELRLKPLTVFALVEKYKWKRFLCFTNSSDQASRLTFVLEVLFQKYNTKVSEL 478
Query: 44 -----------TLKAFRGKGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAG 83
L+ F G + L+CSDA+ G+DV E +I TYIHR G
Sbjct: 479 SGNLSAKVRKERLRDF-AAGKINGLICSDALARGIDVADVDVVLSYEIPRHITTYIHRVG 537
Query: 84 PRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQAD 122
ARAG+ G TLL + + + FKK+L A+
Sbjct: 538 RTARAGRKGTAVTLLTE--------YDMTLFKKILSDAN 568
>gi|88705999|ref|ZP_01103707.1| ATP-dependent RNA helicase RhlE [Congregibacter litoralis KT71]
gi|88699713|gb|EAQ96824.1| ATP-dependent RNA helicase RhlE [Congregibacter litoralis KT71]
Length = 443
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 10/73 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L F+ G ++ LV +D G+D+++ ++ + YIHR G ARAGQ GH
Sbjct: 285 RALAEFK-SGAIRALVATDIAARGIDIDKLPHVVNYELPNVAEDYIHRIGRTARAGQEGH 343
Query: 94 CFTLLPKDEDKLL 106
+L+ DE KLL
Sbjct: 344 AISLVCVDELKLL 356
>gi|409358710|ref|ZP_11237069.1| dead/deah box helicase [Dietzia alimentaria 72]
Length = 539
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K+LKAFR G + VLV +D G+DV+ ++ KTY+HR G RAG+ G
Sbjct: 341 KSLKAFR-TGEVDVLVATDVAARGIDVDDVTHVINYQCPEDEKTYVHRIGRTGRAGRKGV 399
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 400 AVTLVDWDD 408
>gi|404251857|ref|ZP_10955825.1| ATP-dependent RNA helicase [Sphingomonas sp. PAMC 26621]
Length = 431
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 15/128 (11%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L AFR G +QVLV +D G+DV+ ++ ++Y+HR G RAG++G
Sbjct: 291 RALDAFRA-GTVQVLVATDIAARGIDVDTVTHVFNHDLPSLPESYVHRIGRTGRAGRSGF 349
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHD-SCPV--HSIPSSSIESLRPIYKSEYVES 150
TL ++ L+ + + + L DH C V HS + + P+ + +
Sbjct: 350 AITLCDAEQRAWLHDVEREIGRTLTVHDDHAWHCEVARHSTKRAPVLGGGPVKQVK--PE 407
Query: 151 QANRKRKI 158
+A R+RK+
Sbjct: 408 KAPRERKV 415
>gi|328867619|gb|EGG16001.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 506
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 15/102 (14%)
Query: 19 LIPLLRNLGGEKF--IVFASSVANSPKT--LKAFRGKGHMQVLVCSDAMTSGMDVERAAY 74
LI L+ + G +++S+V+ ++ L++ + H+ +L+CSD ++ GMDV
Sbjct: 324 LIGLVNEINGYNIKPALYSSTVSTIERSHLLESLKN-NHINLLICSDILSRGMDVPNVDA 382
Query: 75 IKTY---------IHRAGPRARAGQNGHCFTLLPK-DEDKLL 106
+ Y +HR G ARAG+ G +T++ D+ KL+
Sbjct: 383 VINYNLPLTAVLYVHRVGRTARAGKEGEAYTIVDTVDKSKLI 424
>gi|421617199|ref|ZP_16058195.1| DEAD/DEAH box helicase, partial [Pseudomonas stutzeri KOS6]
gi|409780930|gb|EKN60543.1| DEAD/DEAH box helicase, partial [Pseudomonas stutzeri KOS6]
Length = 457
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 57/108 (52%), Gaps = 16/108 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ +++LV +D G+D+++ ++ + Y+HR G RAG++G
Sbjct: 249 KALADFKAN-QVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGE 307
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRP 141
+L+ DE+KLL K ++L +Q + P+ +SSIE+ +P
Sbjct: 308 AISLVAPDEEKLL-----KGIERLTKQRIPEGDPM-GFDASSIEAEKP 349
>gi|182436152|ref|YP_001823871.1| ATP-dependent RNA helicase [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178464668|dbj|BAG19188.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp.
griseus NBRC 13350]
Length = 731
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG G
Sbjct: 267 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVVNYQSPEDEKTYLHRIGRTGRAGAKGT 325
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 326 AITLVDWDD 334
>gi|294814858|ref|ZP_06773501.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
gi|326443235|ref|ZP_08217969.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
gi|294327457|gb|EFG09100.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
Length = 819
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG +G
Sbjct: 267 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRVGRTGRAGASGT 325
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 326 AVTLVDWDD 334
>gi|254236843|ref|ZP_04930166.1| hypothetical protein PACG_02863 [Pseudomonas aeruginosa C3719]
gi|126168774|gb|EAZ54285.1| hypothetical protein PACG_02863 [Pseudomonas aeruginosa C3719]
Length = 449
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+ F+ G + ++V +D G+D+E + + Y+HR G RAG +G
Sbjct: 285 RALQRFKA-GEVDLMVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQ 343
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L+ DE +LL + + L ++ + D P H +P ++
Sbjct: 344 AVSLVCADEVELLAAIETLIGQTLQRREEPDFEPEHRVPQTA 385
>gi|241204840|ref|YP_002975936.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240858730|gb|ACS56397.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 521
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 10/72 (13%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
TL++FR G++Q+LV SD G+D+ +++ + Y+HR G RAG++G
Sbjct: 294 TLQSFR-DGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAA 352
Query: 95 FTLLPKDEDKLL 106
FTL+ K + K +
Sbjct: 353 FTLVTKRDTKFV 364
>gi|400595961|gb|EJP63749.1| DEAD/DEAH box helicase [Beauveria bassiana ARSEF 2860]
Length = 472
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 36/138 (26%)
Query: 15 KPIYLIPLLRNLGGEKFIVFASSVANSPKT--------------------------LKAF 48
K YLI ++ G+ IVF +V + + L F
Sbjct: 277 KDTYLIHIINEFAGKSCIVFTRTVYETQRVAILLRTLGFGAIPLHGQLSQSARLGALNKF 336
Query: 49 RGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLP 99
RG G ++LV +D G+D+ + + KTYIHR G ARAG++G +L+
Sbjct: 337 RG-GTREILVATDVAARGLDIPKVDIVLNYDIPSDSKTYIHRVGRTARAGKSGVAISLVT 395
Query: 100 KDEDKLLYMFQVKRFKKL 117
+ + +L + KKL
Sbjct: 396 QYDLELFTRIEAALGKKL 413
>gi|395491184|ref|ZP_10422763.1| ATP-dependent RNA helicase [Sphingomonas sp. PAMC 26617]
Length = 427
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 15/128 (11%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L AFR G +QVLV +D G+DV+ ++ ++Y+HR G RAG++G
Sbjct: 287 RALDAFRA-GTVQVLVATDIAARGIDVDTVTHVFNHDLPSLPESYVHRIGRTGRAGRSGF 345
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHD-SCPV--HSIPSSSIESLRPIYKSEYVES 150
TL ++ L+ + + + L DH C V HS + + P+ + +
Sbjct: 346 AITLCDAEQRAWLHDVEREIGRTLTVHDDHAWHCEVARHSTKRAPVLGGGPVKQVK--PE 403
Query: 151 QANRKRKI 158
+A R+RK+
Sbjct: 404 KAPRERKV 411
>gi|424870828|ref|ZP_18294490.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|393166529|gb|EJC66576.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 521
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 10/72 (13%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
TL++FR G++Q+LV SD G+D+ +++ + Y+HR G RAG++G
Sbjct: 294 TLQSFR-DGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAA 352
Query: 95 FTLLPKDEDKLL 106
FTL+ K + K +
Sbjct: 353 FTLVTKRDTKFV 364
>gi|222055835|ref|YP_002538197.1| DEAD/DEAH box helicase [Geobacter daltonii FRC-32]
gi|221565124|gb|ACM21096.1| DEAD/DEAH box helicase domain protein [Geobacter daltonii FRC-32]
Length = 446
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 15/88 (17%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL FR +G +VLV +D G+D+E+ ++ + Y+HR G RAG+ G
Sbjct: 285 RTLAEFR-RGEFRVLVATDVAARGLDIEQLPHVVNYDLPQVPEDYVHRIGRTGRAGKEGI 343
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQA 121
+L+ +E LL K +KLL+ A
Sbjct: 344 ALSLVSHEEQPLL-----KAIEKLLKYA 366
>gi|383850916|ref|XP_003701020.1| PREDICTED: probable ATP-dependent RNA helicase Dbp73D-like
[Megachile rotundata]
Length = 679
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 23/99 (23%)
Query: 42 PKTLKAFRGK---GHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAG 89
PK + GK G +Q+L+ SDA+ GMD+ + +IK YIHRAG RAG
Sbjct: 541 PKERENVLGKFITGEIQILISSDALARGMDIPDVGLVISYDLPKHIKGYIHRAGRTGRAG 600
Query: 90 QNGHCFTLL-PKDEDKLLYMFQVKRFKKLLQQADHDSCP 127
+ G ++L PK QV FK +L H + P
Sbjct: 601 KTGIVISILTPK---------QVGLFKSMLSNV-HKAVP 629
>gi|333991566|ref|YP_004524180.1| ATP-dependent RNA helicase RhlE [Mycobacterium sp. JDM601]
gi|333487534|gb|AEF36926.1| ATP-dependent RNA helicase RhlE [Mycobacterium sp. JDM601]
Length = 508
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K LKAFR G + VLV +D G+D++ ++ KTY+HR G RAG+ G
Sbjct: 305 KALKAFR-TGDIDVLVATDVAARGIDIDDVTHVVNYQCPDDEKTYVHRIGRTGRAGKTGV 363
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 364 AVTLVDWDE 372
>gi|167748599|ref|ZP_02420726.1| hypothetical protein ANACAC_03372 [Anaerostipes caccae DSM 14662]
gi|167651913|gb|EDR96042.1| DEAD/DEAH box helicase [Anaerostipes caccae DSM 14662]
Length = 478
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 21/130 (16%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
KT+ AFR +G + L+ +D G+D E +++ +TY+HR G R G +G
Sbjct: 282 KTVNAFR-RGGFRFLIATDVAARGIDFEEISHVVNYDFPTGKETYVHRIGRTGRNGNSGT 340
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQAN 153
+L+ +D+ ++L + ++L PV P E R +K + + +A
Sbjct: 341 AVSLVTEDDQRMLKQVETYLGREL---------PVTEPPVIGDEKERAFWKFQRI--KAE 389
Query: 154 RKRKIGFKLS 163
RK + G L+
Sbjct: 390 RKPEKGEALN 399
>gi|325179957|emb|CCA14359.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 843
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 40/78 (51%), Gaps = 12/78 (15%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGHCF 95
L+ FR +G + +L+C+D G+DV E I TY+HR G ARAGQ G
Sbjct: 504 LEKFR-QGAVDILLCTDVAARGIDVKGVRAVINYEMPKDITTYVHRVGRTARAGQVGRAV 562
Query: 96 TLLPKDEDKLLYMFQVKR 113
TL E + L M QV R
Sbjct: 563 TLTS--EYRRLIMKQVTR 578
>gi|254515124|ref|ZP_05127185.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium NOR5-3]
gi|219677367|gb|EED33732.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium NOR5-3]
Length = 444
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 9/64 (14%)
Query: 52 GHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDE 102
G ++ LV +D G+D+++ ++ + YIHR G ARAGQ GH +L+ DE
Sbjct: 293 GTIRALVATDIAARGIDIDKLPHVVNFELPNVPEDYIHRIGRTARAGQQGHAISLVCVDE 352
Query: 103 DKLL 106
KLL
Sbjct: 353 LKLL 356
>gi|365897083|ref|ZP_09435116.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. STM 3843]
gi|365422196|emb|CCE07658.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. STM 3843]
Length = 503
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 11/84 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL AFR G ++ LV +D G+DV+ +++ +TY+HR G ARAG G
Sbjct: 286 RTLAAFR-SGEIRTLVATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIGRTARAGAEGV 344
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKL 117
+L+ E+ L Y+ ++R K+
Sbjct: 345 AISLVAGAEE-LGYLRDIERLIKI 367
>gi|340356237|ref|ZP_08678893.1| ATP-dependent RNA helicase DeaD [Sporosarcina newyorkensis 2681]
gi|339621620|gb|EGQ26171.1| ATP-dependent RNA helicase DeaD [Sporosarcina newyorkensis 2681]
Length = 394
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
KTL+ FR +G ++VL+ +D G+D+E ++ + Y+HR+G RAG +G
Sbjct: 276 KTLEDFR-EGKIRVLIATDLAARGLDIEGLTHVIHVDVPHTVEQYLHRSGRTGRAGADGE 334
Query: 94 CFTLLPKDEDK 104
TLL E++
Sbjct: 335 VLTLLSYAEER 345
>gi|223982748|ref|ZP_03632977.1| hypothetical protein HOLDEFILI_00251 [Holdemania filiformis DSM
12042]
gi|223965288|gb|EEF69571.1| hypothetical protein HOLDEFILI_00251 [Holdemania filiformis DSM
12042]
Length = 424
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L AF+ +QVLV +D G+D+E+ +++ +TY+HR G ARAGQ G
Sbjct: 284 KALAAFKNH-EIQVLVATDIAARGIDIEKLSHVINYNIPNISETYVHRIGRTARAGQEGI 342
Query: 94 CFTLLPKDE 102
+ DE
Sbjct: 343 AISFCQNDE 351
>gi|374314715|ref|YP_005061143.1| DNA/RNA helicase [Sphaerochaeta pleomorpha str. Grapes]
gi|359350359|gb|AEV28133.1| DNA/RNA helicase, superfamily II [Sphaerochaeta pleomorpha str.
Grapes]
Length = 380
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 40/122 (32%)
Query: 21 PLLRNL----GGEKFIVFASSVANSPKT--------------------------LKAFRG 50
PLLR+L ++ ++F SSVA + + L+AF+
Sbjct: 233 PLLRHLIKSQNMKQVLIFTSSVARADRVAEKLQKNGIDAESIHSRKSQGARTDLLRAFK- 291
Query: 51 KGHMQVLVCSDAMTSGMDVERAAYIKTY---------IHRAGPRARAGQNGHCFTLLPKD 101
+G+++VLV +D + G+D+E ++ Y IHR G RAG +G TL+
Sbjct: 292 QGNLRVLVTTDLLARGIDIESLPFVINYELPRSPINFIHRIGRTGRAGNSGEAITLINPS 351
Query: 102 ED 103
E+
Sbjct: 352 EE 353
>gi|254388923|ref|ZP_05004154.1| hypothetical protein SSCG_01341 [Streptomyces clavuligerus ATCC
27064]
gi|197702641|gb|EDY48453.1| hypothetical protein SSCG_01341 [Streptomyces clavuligerus ATCC
27064]
Length = 891
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG +G
Sbjct: 339 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRVGRTGRAGASGT 397
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 398 AVTLVDWDD 406
>gi|319955548|ref|YP_004166815.1| dead/deah box helicase domain protein [Cellulophaga algicola DSM
14237]
gi|319424208|gb|ADV51317.1| DEAD/DEAH box helicase domain protein [Cellulophaga algicola DSM
14237]
Length = 446
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ + FR +G +++LV +D + G+DV+ +Y+ Y+HR+G ARAG NG
Sbjct: 284 RVMGQFR-EGQLKILVATDLASRGIDVKDISYVVNYHLPETYDLYVHRSGRTARAGANGL 342
Query: 94 CFTLLPKDE 102
T+L ++E
Sbjct: 343 SITILQQEE 351
>gi|99081650|ref|YP_613804.1| DEAD/DEAH box helicase [Ruegeria sp. TM1040]
gi|99037930|gb|ABF64542.1| DEAD/DEAH box helicase-like protein [Ruegeria sp. TM1040]
Length = 493
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 11/73 (15%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
KTL FR G +++LV SD G+DV +++ + Y+HR G RAG++G
Sbjct: 293 KTLDGFR-DGTLKILVASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGK 351
Query: 94 CFTLL-PKDEDKL 105
TL P+DE L
Sbjct: 352 AITLCSPRDEKAL 364
>gi|56696327|ref|YP_166684.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3]
gi|56678064|gb|AAV94730.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3]
Length = 471
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 11/73 (15%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL FR +G +++LV SD G+DV +++ + Y+HR G RAG++G
Sbjct: 293 RTLDGFR-EGKLRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGK 351
Query: 94 CFTL-LPKDEDKL 105
TL +P+DE L
Sbjct: 352 AITLCIPRDEKAL 364
>gi|281209875|gb|EFA84043.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 559
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 12/80 (15%)
Query: 34 FASSVANSPKT--LKAFRGKGHMQVLVCSDAMTSGMDVERAAYIKTY---------IHRA 82
++SS+ + ++ LK F G + VL+CSD + GMD+ + Y +HR
Sbjct: 388 YSSSINSIERSNLLKLF-ANGDINVLICSDILARGMDLPNVDAVINYNAPPSAVLYVHRV 446
Query: 83 GPRARAGQNGHCFTLLPKDE 102
G ARAG+ G +T++ ++E
Sbjct: 447 GRTARAGRKGSAYTIVAREE 466
>gi|443624408|ref|ZP_21108880.1| putative Helicase [Streptomyces viridochromogenes Tue57]
gi|443342098|gb|ELS56268.1| putative Helicase [Streptomyces viridochromogenes Tue57]
Length = 782
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG G
Sbjct: 325 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGNKGI 383
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 384 AITLVDWDD 392
>gi|327404226|ref|YP_004345064.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
taffensis DSM 16823]
gi|327319734|gb|AEA44226.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
16823]
Length = 379
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 11/70 (15%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L+ F+ GH++VLV +D ++ G+D+E ++ K Y+HR G RA G
Sbjct: 285 KVLRNFKA-GHLKVLVATDLISRGIDIEFLPFVINYELPRSPKDYVHRIGRTGRAESTGE 343
Query: 94 CFTLL-PKDE 102
T + P+DE
Sbjct: 344 ALTFVTPEDE 353
>gi|315224756|ref|ZP_07866579.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga
ochracea F0287]
gi|420160066|ref|ZP_14666855.1| DEAD/DEAH box helicase [Capnocytophaga ochracea str. Holt 25]
gi|314945384|gb|EFS97410.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga
ochracea F0287]
gi|394761054|gb|EJF43491.1| DEAD/DEAH box helicase [Capnocytophaga ochracea str. Holt 25]
Length = 584
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 15/85 (17%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAGQNGHCF 95
+K+FR + +Q+LV +D G+DV+ + I+TY HR+G RAG++G
Sbjct: 285 MKSFRAR-QIQMLVATDVAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISM 343
Query: 96 TLLPKDEDKLLYMFQVKRFKKLLQQ 120
+LPK E K ++K +K++ Q
Sbjct: 344 VILPKSEVK-----KIKTIEKMIGQ 363
>gi|297202208|ref|ZP_06919605.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
gi|297148059|gb|EDY61279.2| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
Length = 723
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG G
Sbjct: 267 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQCPEEEKTYLHRIGRTGRAGAKGI 325
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 326 AITLVDWDD 334
>gi|21223535|ref|NP_629314.1| helicase [Streptomyces coelicolor A3(2)]
gi|9714451|emb|CAC01367.1| putative helicase [Streptomyces coelicolor A3(2)]
Length = 879
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG G
Sbjct: 267 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGT 325
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 326 AITLVDWDD 334
>gi|56460599|ref|YP_155880.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
gi|56179609|gb|AAV82331.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
Length = 372
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 11/70 (15%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ +Q+L+ +D + G+D+E+ Y+ + YIHR G RAGQ GH
Sbjct: 284 KALADFKS-AKVQMLIATDIASRGIDIEKLPYVINYDLPHVAEDYIHRIGRTGRAGQTGH 342
Query: 94 CFTLLPKDED 103
+L+ DED
Sbjct: 343 AISLV-TDED 351
>gi|329939625|ref|ZP_08288926.1| putative ATP-dependent RNA helicase [Streptomyces griseoaurantiacus
M045]
gi|329301195|gb|EGG45090.1| putative ATP-dependent RNA helicase [Streptomyces griseoaurantiacus
M045]
Length = 848
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 15/123 (12%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG +G
Sbjct: 337 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRTGRTGRAGASGT 395
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQAN 153
T + D+ + + + K L HD +S E L ++ V +A
Sbjct: 396 AITFVDWDD-----IPRWQLINKALGLDYHDPVETYSTSPHFFEELSIPAGTKGVLPRAE 450
Query: 154 RKR 156
R R
Sbjct: 451 RTR 453
>gi|386357654|ref|YP_006055900.1| hypothetical protein SCATT_40070 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|365808162|gb|AEW96378.1| hypothetical protein SCATT_40070 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
Length = 816
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DV+ ++ KTY+HR G RAG +G
Sbjct: 306 QALRAFR-NGKVDVLVCTDVAARGIDVDGVTHVVNYQCPEDEKTYLHRVGRTGRAGASGT 364
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 365 AITLVDWDD 373
>gi|284040525|ref|YP_003390455.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
gi|283819818|gb|ADB41656.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
Length = 475
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 61/122 (50%), Gaps = 19/122 (15%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCF 95
+ AF+ +G++QVLV +D G+DV +++ + Y+HR G RA + G
Sbjct: 290 MDAFK-EGNIQVLVSTDVAARGIDVAEVSHVINFDLPLIYEDYVHRIGRTGRANRTGEAI 348
Query: 96 TLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQANRK 155
T L K E+ + V++ +++++ + P +P+ + + P + + + + + +
Sbjct: 349 TFLTKAEE-----YHVQKIERIIKA----TIPRQPLPAGVVVAETPFEEEQAMLREIDEQ 399
Query: 156 RK 157
R+
Sbjct: 400 RR 401
>gi|218462794|ref|ZP_03502885.1| ATP dependent RNA helicase protein [Rhizobium etli Kim 5]
Length = 398
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 10/71 (14%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCF 95
L++FR G++Q+LV SD G+D+ +++ + Y+HR G RAG++G F
Sbjct: 289 LQSFR-DGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAF 347
Query: 96 TLLPKDEDKLL 106
TL+ K + K +
Sbjct: 348 TLVTKRDTKFV 358
>gi|408529448|emb|CCK27622.1| ATP-dependent RNA helicase DeaD [Streptomyces davawensis JCM 4913]
Length = 917
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG G
Sbjct: 325 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGNTGT 383
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 384 AITLVDWDD 392
>gi|345009150|ref|YP_004811504.1| DEAD/DEAH box helicase [Streptomyces violaceusniger Tu 4113]
gi|344035499|gb|AEM81224.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
Tu 4113]
Length = 859
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG +G
Sbjct: 331 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGASGI 389
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 390 AITLVDWDD 398
>gi|343426780|emb|CBQ70308.1| related to DBP6-ATP-dependent RNA helicase [Sporisorium reilianum
SRZ2]
Length = 852
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 18/86 (20%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYIKTY---------IHRAGPRARAGQNGH 93
+ L AF +G + +LVCSD ++ G+D+ ++ +Y +HR G ARAG++G
Sbjct: 721 RILAAF-AQGEIDLLVCSDLISRGIDLPSVEHVVSYDAPIDPAKYVHRVGRTARAGKHGD 779
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQ 119
+TL+ + E + FKK+++
Sbjct: 780 AWTLVEEQE--------ARHFKKMIR 797
>gi|452839340|gb|EME41279.1| hypothetical protein DOTSEDRAFT_73630 [Dothistroma septosporum
NZE10]
Length = 513
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 36/121 (29%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPK--------------------------TLK 46
K K IYL+ LL G+ IVF ++ + + L
Sbjct: 311 KFKDIYLVYLLNEFAGQTCIVFTRTINETQRIAFLLRALGRSAIPLHGQMNQSARLGALN 370
Query: 47 AFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
FRG G ++LV +D G+D+ + KTY+HR G ARAG++G ++
Sbjct: 371 KFRG-GSREILVATDVAARGLDIPSVDLVLNFDLPPDSKTYVHRVGRTARAGKSGVAISV 429
Query: 98 L 98
+
Sbjct: 430 V 430
>gi|393780089|ref|ZP_10368315.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 412 str.
F0487]
gi|392609037|gb|EIW91859.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 412 str.
F0487]
Length = 584
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 15/85 (17%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAGQNGHCF 95
+K+FR + +Q+LV +D G+DV+ + I+TY HR+G RAG++G
Sbjct: 285 MKSFRAR-QIQMLVATDVAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISM 343
Query: 96 TLLPKDEDKLLYMFQVKRFKKLLQQ 120
+LPK E K ++K +K++ Q
Sbjct: 344 VILPKSEVK-----KIKTIEKMIGQ 363
>gi|392550456|ref|ZP_10297593.1| ATP-dependent RNA helicase [Pseudoalteromonas spongiae
UST010723-006]
Length = 377
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L+ FR G ++VLV +D G+D+ Y+ + Y+HR G RAG+ G
Sbjct: 248 KALEQFRA-GELRVLVATDVAARGIDIPSLDYVINAELPYIAEDYVHRIGRTGRAGKAGT 306
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQ 120
+L+ DE+ LL +V ++L Q
Sbjct: 307 AISLVSLDENWLLEEIEVLLDERLTPQ 333
>gi|339243967|ref|XP_003377909.1| ATP-dependent rRNA helicase Rrp3 [Trichinella spiralis]
gi|316973226|gb|EFV56846.1| ATP-dependent rRNA helicase Rrp3 [Trichinella spiralis]
Length = 496
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 34/127 (26%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K YL+ +L + G+ IVF S+ ANS +T R G H Q
Sbjct: 286 KFKDCYLVYILNEMAGKSCIVFTSTCANSLRTALLLRNLGFTAVPLHGQMSQAKRLGALN 345
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+L+ +D + G+D+ + K YIHR G ARAG+ G T +
Sbjct: 346 KFKAKDRSILIATDVASRGLDIPHVDLVINFDIPTHSKDYIHRVGRTARAGRAGISITFV 405
Query: 99 PKDEDKL 105
+ + +L
Sbjct: 406 TQYDVEL 412
>gi|294142025|ref|YP_003558003.1| DEAD/DEAH box helicase [Shewanella violacea DSS12]
gi|293328494|dbj|BAJ03225.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
DSS12]
Length = 427
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L+ F+ G ++VLV +D G+D+ Y+ + Y+HR G RAG G
Sbjct: 303 KVLQGFK-DGEVRVLVATDVAARGIDIIDLNYVINYELPYKAEDYVHRIGRTGRAGNKGL 361
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQ 120
TLL +++ LL +V K+L QQ
Sbjct: 362 AITLLCSEDEHLLEEVEVVLDKRLPQQ 388
>gi|229490988|ref|ZP_04384821.1| dead/deah box helicase [Rhodococcus erythropolis SK121]
gi|229322104|gb|EEN87892.1| dead/deah box helicase [Rhodococcus erythropolis SK121]
Length = 385
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K LK FR G + VLV +D G+D++ ++ KTY+HR G RAG+ G
Sbjct: 261 KALKGFR-NGKVDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGI 319
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 320 AVTLVDWDD 328
>gi|213963177|ref|ZP_03391435.1| ATP-dependent rna helicase, dead/deah box family [Capnocytophaga
sputigena Capno]
gi|213954261|gb|EEB65585.1| ATP-dependent rna helicase, dead/deah box family [Capnocytophaga
sputigena Capno]
Length = 584
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 15/85 (17%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAGQNGHCF 95
+K+FR + +Q+LV +D G+DV+ + I+TY HR+G RAG++G
Sbjct: 285 MKSFRAR-QIQMLVATDVAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISM 343
Query: 96 TLLPKDEDKLLYMFQVKRFKKLLQQ 120
+LPK E K ++K +K++ Q
Sbjct: 344 VILPKSEVK-----KIKTIEKMIGQ 363
>gi|410863319|ref|YP_006978553.1| ATP-dependent RNA helicase DbpA [Alteromonas macleodii AltDE1]
gi|410820581|gb|AFV87198.1| ATP-dependent RNA helicase DbpA [Alteromonas macleodii AltDE1]
Length = 459
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 23/96 (23%)
Query: 54 MQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDEDK 104
+QVLV +D G+D++ A + +T+IHR G ARAG G TL+ ++E+
Sbjct: 293 LQVLVATDVAARGLDIDDVACVINYTVSEEPETHIHRIGRTARAGAKGMAITLVSEEEEH 352
Query: 105 LLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLR 140
L +V LQ++D IP +SLR
Sbjct: 353 FLRKIEV------LQESD--------IPLKGAQSLR 374
>gi|357121637|ref|XP_003562524.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 10-like
[Brachypodium distachyon]
Length = 447
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 17/147 (11%)
Query: 23 LRNLGGEKFIVFASSVANSPK--TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI----- 75
LRNLG K + + ++ + L F+ K +L+C+D + G+D++ +
Sbjct: 277 LRNLGF-KALSISGQMSQDKRLGALNKFKAK-DFNILICTDVASRGLDIQGVDVVINYDI 334
Query: 76 ----KTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKL-LQQADHDSCPVHS 130
K Y+HR G ARAG++G+ +L+ + E + M + K++ L++ D D
Sbjct: 335 PMNSKDYVHRVGRTARAGKSGYAVSLVNQYEGQWFKMIEALLGKEIDLRKVDSDEI---M 391
Query: 131 IPSSSIESLRPIYKSEYVESQANRKRK 157
I I R I ++ E ++KR+
Sbjct: 392 ILREHISDSRRIALTKLKEDGGHKKRR 418
>gi|429753100|ref|ZP_19285920.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 326 str.
F0382]
gi|429174694|gb|EKY16166.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 326 str.
F0382]
Length = 584
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 15/85 (17%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAGQNGHCF 95
+K+FR + +Q+LV +D G+DV+ + I+TY HR+G RAG++G
Sbjct: 285 MKSFRAR-QIQMLVATDVAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISM 343
Query: 96 TLLPKDEDKLLYMFQVKRFKKLLQQ 120
+LPK E K ++K +K++ Q
Sbjct: 344 VILPKSEVK-----KIKTIEKMIGQ 363
>gi|29829640|ref|NP_824274.1| ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680]
gi|29606748|dbj|BAC70809.1| putative ATP-dependent RNA helicase [Streptomyces avermitilis
MA-4680]
Length = 759
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG G
Sbjct: 267 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGAKGI 325
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 326 AITLVDWDD 334
>gi|429747366|ref|ZP_19280638.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 380 str.
F0488]
gi|429163302|gb|EKY05542.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 380 str.
F0488]
Length = 584
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 15/85 (17%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAGQNGHCF 95
+K+FR + +Q+LV +D G+DV+ + I+TY HR+G RAG++G
Sbjct: 285 MKSFRAR-QIQMLVATDVAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISM 343
Query: 96 TLLPKDEDKLLYMFQVKRFKKLLQQ 120
+LPK E K ++K +K++ Q
Sbjct: 344 VILPKSEVK-----KIKTIEKMIGQ 363
>gi|91794376|ref|YP_564027.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
gi|91716378|gb|ABE56304.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
Length = 496
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 10/104 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G +QV+V +D G+D+++ ++ + Y+HR G RAG +G
Sbjct: 284 KALADFKA-GKVQVMVATDIAARGIDIDQLPFVVNFDLPNVSEDYVHRIGRTGRAGASGQ 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIE 137
+L+ +E KLL+ + + + ++A P HS+P +++
Sbjct: 343 AVSLVADEEVKLLHDIERLIGRVIDRKAIPGHEPRHSLPEPNLK 386
>gi|260820656|ref|XP_002605650.1| hypothetical protein BRAFLDRAFT_232791 [Branchiostoma floridae]
gi|229290985|gb|EEN61660.1| hypothetical protein BRAFLDRAFT_232791 [Branchiostoma floridae]
Length = 449
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 35/146 (23%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRG----------KGHMQ--- 55
+C S K +L+ LR+ G EK +VF S+ A A R G M+
Sbjct: 244 MCRSDEKFNHLVAFLRSHGNEKHMVFFSTCAGVDYFSSALRELLKNTRVMSIHGKMKQKR 303
Query: 56 -------------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
VLVC+D M G+D+ ++ ++HR+G AR G+ G
Sbjct: 304 NKIFAQFRQAESGVLVCTDVMARGVDIPEVNWVLQFDPPSNASAFVHRSGRTARMGREGS 363
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQ 119
L +ED + + + L Q
Sbjct: 364 AVVFLLPEEDTYIEFIAINQKVTLTQ 389
>gi|172040180|ref|YP_001799893.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
gi|448823164|ref|YP_007416329.1| putative ATP-dependent RNA helicase [Corynebacterium urealyticum
DSM 7111]
gi|171851484|emb|CAQ04460.1| putative ATP-dependent RNA helicase [Corynebacterium urealyticum
DSM 7109]
gi|448276661|gb|AGE36085.1| putative ATP-dependent RNA helicase [Corynebacterium urealyticum
DSM 7111]
Length = 497
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 10/73 (13%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A+ ++L+ FR G + V+V +D G+DV ++ +TY+HR G ARAG
Sbjct: 308 ADREQSLQLFR-DGAVDVMVATDVAARGIDVTDVTHVVNYQVPEDERTYVHRIGRTARAG 366
Query: 90 QNGHCFTLLPKDE 102
++G TL+ DE
Sbjct: 367 KDGTAITLVGWDE 379
>gi|410722381|ref|ZP_11361682.1| DNA/RNA helicase, superfamily II [Methanobacterium sp. Maddingley
MBC34]
gi|410597125|gb|EKQ51762.1| DNA/RNA helicase, superfamily II [Methanobacterium sp. Maddingley
MBC34]
Length = 527
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 20/108 (18%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ + FR KG +++LV +D G+DVE + + Y+HR G RAG+ G
Sbjct: 283 RVMNKFR-KGQIEILVATDVAARGIDVEDVEAVFNYDVPNNDEYYVHRIGRTGRAGKTGQ 341
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPS-SSIESLR 140
FT + E + + ++R+ K+ H IPS S +E ++
Sbjct: 342 AFTFVSGKE--IYQLRDIQRYTKV-------RIEQHKIPSLSEVEEVK 380
>gi|420148811|ref|ZP_14656001.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 335 str.
F0486]
gi|394754718|gb|EJF38045.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 335 str.
F0486]
Length = 592
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 15/85 (17%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAGQNGHCF 95
+K+FR + +Q+LV +D G+DV+ + I+TY HR+G RAG++G
Sbjct: 285 MKSFRAR-QIQMLVATDVAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISM 343
Query: 96 TLLPKDEDKLLYMFQVKRFKKLLQQ 120
+LPK E K ++K +K++ Q
Sbjct: 344 VILPKSEVK-----KIKTIEKMIGQ 363
>gi|390333037|ref|XP_786504.3| PREDICTED: nucleolar RNA helicase 2-like [Strongylocentrotus
purpuratus]
Length = 751
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 13/86 (15%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
TLK FR +G Q LV +D G+D+ + +YIHR+G RAG+NG C
Sbjct: 414 TLKGFR-EGKFQCLVTTDVAARGLDIPEVDLVIQCNPPRDVDSYIHRSGRTGRAGRNGVC 472
Query: 95 FTLLPKDEDKLLYMFQVK---RFKKL 117
+ E++ L + K +FK++
Sbjct: 473 VCFYKRQEERDLQKVEYKAGIKFKRV 498
>gi|372267577|ref|ZP_09503625.1| DEAD/DEAH box helicase [Alteromonas sp. S89]
Length = 474
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G +Q+LV +D G+D+++ + + Y+HR G RAG +GH
Sbjct: 284 KALAEFK-NGKVQILVATDIAARGIDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGH 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
+L+ DE K L + K + ++ P H++P S
Sbjct: 343 AVSLVSADEIKQLRDIERLIQKPIEREEIEGFEPDHAVPESG 384
>gi|260820614|ref|XP_002605629.1| hypothetical protein BRAFLDRAFT_283402 [Branchiostoma floridae]
gi|229290964|gb|EEN61639.1| hypothetical protein BRAFLDRAFT_283402 [Branchiostoma floridae]
Length = 591
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 35/146 (23%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRG----------KGHMQ--- 55
+C S K +L+ LR+ G EK +VF S+ A A R G M+
Sbjct: 244 MCRSDEKFNHLVAFLRSHGNEKHMVFFSTCAGVDYFSSALRELLKNTRVMSIHGKMKQKR 303
Query: 56 -------------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
VLVC+D M G+D+ ++ ++HR+G AR G+ G
Sbjct: 304 NKIFAQFRQAESGVLVCTDVMARGVDIPEVNWVLQFDPPSNASAFVHRSGRTARMGREGS 363
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQ 119
L +ED + + + L Q
Sbjct: 364 AVVFLLPEEDTYIEFIAINQKVTLTQ 389
>gi|268529640|ref|XP_002629946.1| Hypothetical protein CBG03667 [Caenorhabditis briggsae]
Length = 565
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCF 95
L AFR K +QV++C+D + G+D+ + KTYIHR G ARAG+ G
Sbjct: 381 LSAFRSKT-LQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSAL 439
Query: 96 TLLPKDEDKLLYMFQVKRFKKL 117
+ + + + +LL + KKL
Sbjct: 440 SFVTQYDVELLQAVEKTIGKKL 461
>gi|312087983|ref|XP_003145684.1| hypothetical protein LOAG_10109 [Loa loa]
Length = 537
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 11 ESKLKPIYLIPLLRNLGGE---KFIVFASSVANSPKTLKAFRGKGHMQVLVCSDAMTSGM 67
+SKL+ L+P++ +L K I + + FR GH+ LVC+D M G+
Sbjct: 364 QSKLRAKQLVPVIESLQPPIPVKMISSEKTETERESAIAEFRS-GHIWALVCTDLMGRGL 422
Query: 68 DV---------ERAAYIKTYIHRAGPRARAGQNGHCFTLLPKDE 102
D+ + I +YIHR G RAG+ GH T + +
Sbjct: 423 DLSGVNLVVNFDLPTSIISYIHRIGRTGRAGRKGHAVTYFTESD 466
>gi|257783884|ref|YP_003179101.1| DEAD/DEAH box helicase [Atopobium parvulum DSM 20469]
gi|257472391|gb|ACV50510.1| DEAD/DEAH box helicase domain protein [Atopobium parvulum DSM
20469]
Length = 450
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 19/121 (15%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L FR +Q+LV +D M+ G+D++ + + Y+HR G RAG G
Sbjct: 317 KALDRFR-SASIQILVATDVMSRGIDIQGIDVVINFDVPLDPEDYVHRIGRTGRAGATGQ 375
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQAN 153
+T + DE + + +++ F K L P +P E+ R I ++ S+
Sbjct: 376 AYTFMGPDE--VTPLREIEYFTKAL-------VPAWDLPGFGYETGRIILQASRSTSKTT 426
Query: 154 R 154
R
Sbjct: 427 R 427
>gi|328870357|gb|EGG18732.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 734
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAGQNGHCF 95
++ FR G + VL+C++ M GMD + Y I +Y+HR G RAG+ G
Sbjct: 531 VQRFRS-GKIWVLICTELMARGMDFKGVNYVINFDFPNTIASYVHRIGRTGRAGRQGKAI 589
Query: 96 TLLPKDE 102
TL KD+
Sbjct: 590 TLYTKDD 596
>gi|453069932|ref|ZP_21973185.1| ATP-dependent RNA helicase [Rhodococcus qingshengii BKS 20-40]
gi|452762477|gb|EME20773.1| ATP-dependent RNA helicase [Rhodococcus qingshengii BKS 20-40]
Length = 474
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K LK FR G + VLV +D G+D++ ++ KTY+HR G RAG+ G
Sbjct: 261 KALKGFR-NGKVDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGI 319
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 320 AVTLVDWDD 328
>gi|310659566|ref|YP_003937287.1| ATP-dependent RNA helicase; cold shock [[Clostridium] sticklandii]
gi|308826344|emb|CBH22382.1| ATP-dependent RNA helicase; cold shock [[Clostridium] sticklandii]
Length = 515
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L+ F+ +G +++LV +D G+D+ +++ ++Y+HR G RAGQ G
Sbjct: 281 KVLRRFK-RGSIKILVATDVAARGLDISGVSHVFNFDLPQDPESYVHRIGRTGRAGQKGI 339
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQ 120
FT + E + L + + K+L+Q
Sbjct: 340 SFTFVTPREREYLELIEDTTKSKMLKQ 366
>gi|71004804|ref|XP_757068.1| hypothetical protein UM00921.1 [Ustilago maydis 521]
gi|46096872|gb|EAK82105.1| hypothetical protein UM00921.1 [Ustilago maydis 521]
Length = 870
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYIKTY---------IHRAGPRARAGQNGH 93
+ L AF KG + +LVCSD ++ G+D+ ++ +Y +HR G ARAG++G
Sbjct: 740 RILSAFE-KGEIDLLVCSDLISRGIDLPSVEHVISYDAPIDPAKYVHRVGRTARAGKHGD 798
Query: 94 CFTLLPKDE 102
+TL+ + E
Sbjct: 799 AWTLVEEQE 807
>gi|291000284|ref|XP_002682709.1| dead box-containing ATP-dependent RNA helicase [Naegleria gruberi]
gi|284096337|gb|EFC49965.1| dead box-containing ATP-dependent RNA helicase [Naegleria gruberi]
Length = 955
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 18/87 (20%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCF 95
LK FR K ++ L C+D G+D+ Y+ Y+HR G ARAG+ G C
Sbjct: 431 LKYFR-KRRLKFLFCTDVANRGLDIPAVGYVINYDLPDTTDKYVHRVGRTARAGRLGVCI 489
Query: 96 TLLPKDEDKLLYMFQVKRFKKLLQQAD 122
+L+ + F+VKR K + D
Sbjct: 490 SLISQ--------FEVKRIKAIESDTD 508
>gi|163800537|ref|ZP_02194438.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
AND4]
gi|159175980|gb|EDP60774.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
AND4]
Length = 416
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 16/130 (12%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L F+ +G ++ L+ +D G+D++ + + Y+HR G RAG++G
Sbjct: 284 RALDDFK-EGKVRALIATDVAARGLDIQALEQVVNFDLPFKAEDYVHRIGRTGRAGKSGL 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQAN 153
+L+ DE+ LL + K+L Q+ + S IE + P S +S+++
Sbjct: 343 AVSLMSHDEEYLLTAIENLLDKRLPQEW------LEGFEPSLIEEVEPERNSGGRKSRSS 396
Query: 154 RKRKIGFKLS 163
KRK+ KL+
Sbjct: 397 EKRKMKAKLA 406
>gi|393911181|gb|EFO18387.2| hypothetical protein LOAG_10109 [Loa loa]
Length = 542
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 11 ESKLKPIYLIPLLRNLGGE---KFIVFASSVANSPKTLKAFRGKGHMQVLVCSDAMTSGM 67
+SKL+ L+P++ +L K I + + FR GH+ LVC+D M G+
Sbjct: 369 QSKLRAKQLVPVIESLQPPIPVKMISSEKTETERESAIAEFRS-GHIWALVCTDLMGRGL 427
Query: 68 DV---------ERAAYIKTYIHRAGPRARAGQNGHCFTLLPKDE 102
D+ + I +YIHR G RAG+ GH T + +
Sbjct: 428 DLSGVNLVVNFDLPTSIISYIHRIGRTGRAGRKGHAVTYFTESD 471
>gi|392393283|ref|YP_006429885.1| DNA/RNA helicase [Desulfitobacterium dehalogenans ATCC 51507]
gi|390524361|gb|AFM00092.1| DNA/RNA helicase, superfamily II [Desulfitobacterium dehalogenans
ATCC 51507]
Length = 443
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 37 SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRAR 87
S AN + L AF+ K ++LV +D G+D++ +++ +TYIHR G R
Sbjct: 302 SQANREQALNAFK-KRKTRILVATDIAARGLDIQELSHVINYNLPEVPETYIHRIGRTGR 360
Query: 88 AGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSI 131
AG G T +E LL Q KR K L + P+ +I
Sbjct: 361 AGLGGKAITFCDFEEKPLLRDIQ-KRIGKTLPEVKEHPYPLVNI 403
>gi|341882300|gb|EGT38235.1| hypothetical protein CAEBREN_08382 [Caenorhabditis brenneri]
Length = 554
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCF 95
L AFR K +QV++C+D + G+D+ + KTY+HR G ARAG+ G
Sbjct: 371 LSAFRSKT-LQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYVHRVGRSARAGRFGSAL 429
Query: 96 TLLPKDEDKLLYMFQVKRFKKL 117
+ + + + +LL + KKL
Sbjct: 430 SFVTQYDVELLQAVEQTIGKKL 451
>gi|316933048|ref|YP_004108030.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris DX-1]
gi|315600762|gb|ADU43297.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
DX-1]
Length = 473
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L AFR G ++ LV +D G+DV+ +++ +TY+HR G ARAG +G
Sbjct: 292 RVLAAFR-TGELRTLVATDIAARGIDVDGVSHVFNFDLPNIPETYVHRIGRTARAGADGT 350
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKL-LQQADHDSCPVHSIPS 133
+L +E + Y+ +++ K+ L + D + H+ P+
Sbjct: 351 AISLCAGEE--MAYLRDIEKLIKVSLPKEDRRTPGAHAAPT 389
>gi|229172846|ref|ZP_04300400.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus MM3]
gi|423403272|ref|ZP_17380445.1| hypothetical protein ICW_03670 [Bacillus cereus BAG2X1-2]
gi|423476077|ref|ZP_17452792.1| hypothetical protein IEO_01535 [Bacillus cereus BAG6X1-1]
gi|228610591|gb|EEK67859.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus MM3]
gi|401648918|gb|EJS66510.1| hypothetical protein ICW_03670 [Bacillus cereus BAG2X1-2]
gi|402434337|gb|EJV66379.1| hypothetical protein IEO_01535 [Bacillus cereus BAG6X1-1]
Length = 389
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
T++AFRG G +++L+ +D G+D++ ++ YIHR+G R G+ G
Sbjct: 276 TMRAFRG-GKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTV 334
Query: 95 FTLLPKDEDKLLYMF 109
+L+ + E++ L F
Sbjct: 335 VSLVTQQEERKLLQF 349
>gi|223999483|ref|XP_002289414.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
gi|220974622|gb|EED92951.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
Length = 494
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 9/54 (16%)
Query: 54 MQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGHCFTLL 98
+ VLVCSD M+ GMD+ + +Y KTY+HR G ARAG+ G ++L
Sbjct: 371 VSVLVCSDGMSRGMDLPCVSAVINYDVPSYAKTYVHRCGRTARAGKEGKAISVL 424
>gi|386383444|ref|ZP_10068929.1| ATP-dependent RNA helicase [Streptomyces tsukubaensis NRRL18488]
gi|385669082|gb|EIF92340.1| ATP-dependent RNA helicase [Streptomyces tsukubaensis NRRL18488]
Length = 746
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG +G
Sbjct: 267 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGASGT 325
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 326 AVTLVDWDD 334
>gi|392378895|ref|YP_004986055.1| ATP-dependent RNA helicase [Azospirillum brasilense Sp245]
gi|356880377|emb|CCD01326.1| ATP-dependent RNA helicase [Azospirillum brasilense Sp245]
Length = 526
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 10/64 (15%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL+AF+ KG + +LVCSD G+DV+ +++ + Y+HR G RAG++G
Sbjct: 283 ETLEAFK-KGEITLLVCSDVAARGLDVQGLSHVFNFDVPISAEDYVHRIGRTGRAGRSGR 341
Query: 94 CFTL 97
FTL
Sbjct: 342 AFTL 345
>gi|429754730|ref|ZP_19287423.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 324 str.
F0483]
gi|429176597|gb|EKY17970.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 324 str.
F0483]
Length = 584
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 15/85 (17%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAGQNGHCF 95
+K+FR + +Q+LV +D G+DV+ + I+TY HR+G RAG++G
Sbjct: 285 MKSFRAR-QIQMLVATDVAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISM 343
Query: 96 TLLPKDEDKLLYMFQVKRFKKLLQQ 120
+LPK E K ++K +K++ Q
Sbjct: 344 VILPKSEVK-----KIKTIEKMIGQ 363
>gi|423459909|ref|ZP_17436706.1| hypothetical protein IEI_03049 [Bacillus cereus BAG5X2-1]
gi|401142285|gb|EJQ49833.1| hypothetical protein IEI_03049 [Bacillus cereus BAG5X2-1]
Length = 389
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
T++AFRG G +++L+ +D G+D++ ++ YIHR+G R G+ G
Sbjct: 276 TMRAFRG-GKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTV 334
Query: 95 FTLLPKDEDKLLYMF 109
+L+ + E++ L F
Sbjct: 335 VSLVTQQEERKLLQF 349
>gi|256819312|ref|YP_003140591.1| DEAD/DEAH box helicase [Capnocytophaga ochracea DSM 7271]
gi|256580895|gb|ACU92030.1| DEAD/DEAH box helicase domain protein [Capnocytophaga ochracea DSM
7271]
Length = 584
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 15/85 (17%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAGQNGHCF 95
+K+FR + +Q+LV +D G+DV+ + I+TY HR+G RAG++G
Sbjct: 285 MKSFRAR-QIQMLVATDVAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISM 343
Query: 96 TLLPKDEDKLLYMFQVKRFKKLLQQ 120
+LPK E K ++K +K++ Q
Sbjct: 344 VILPKSEVK-----KIKTIEKMIGQ 363
>gi|156052799|ref|XP_001592326.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|160358660|sp|A7EML8.1|RRP3_SCLS1 RecName: Full=ATP-dependent rRNA helicase rrp3
gi|154704345|gb|EDO04084.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 482
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 36/119 (30%)
Query: 15 KPIYLIPLLRNLGGEKFIVFASSVANSPK--------------------------TLKAF 48
K YLI LL G+ I+F +V + + L F
Sbjct: 283 KDTYLIYLLNEFAGQSAIIFTRTVNETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKF 342
Query: 49 RGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
R G ++LV +D G+D+ + KTYIHR G ARAG++GH + +
Sbjct: 343 RA-GSREILVATDVAARGLDIPSVDVVLNYDMPQDSKTYIHRVGRTARAGKSGHAISFV 400
>gi|163751537|ref|ZP_02158759.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
gi|161328545|gb|EDP99698.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
Length = 444
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 10/88 (11%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
N + L+ F+ +G ++ LV ++ G+D++ Y+ + Y+HR G RAG
Sbjct: 290 GNRRRALREFK-EGKVRALVATEVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAG 348
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKL 117
++G +L+ ++E++ LY + KKL
Sbjct: 349 KSGVAISLVSREEERTLYDIETLIGKKL 376
>gi|407919270|gb|EKG12523.1| RNA helicase ATP-dependent DEAD-box conserved site [Macrophomina
phaseolina MS6]
Length = 482
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 35 ASSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPR 85
+S+ + S K L+AFR +++L+ SD + G+D+ +I +Y+HR G
Sbjct: 352 SSTTSASRKVLRAFRAN-KLRILIASDRASRGLDLPNLTHIVNYDIPTSITSYVHRVGRT 410
Query: 86 ARAGQNGHCFTLLPKDEDKLLY 107
ARAG G +T L K E +
Sbjct: 411 ARAGAYGVAWTFLTKSEAGWFW 432
>gi|154315003|ref|XP_001556825.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
gi|160358659|sp|A6RW56.1|RRP3_BOTFB RecName: Full=ATP-dependent rRNA helicase rrp3
gi|347841755|emb|CCD56327.1| similar to ATP-dependent rRNA helicase rrp3 [Botryotinia
fuckeliana]
Length = 486
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 36/119 (30%)
Query: 15 KPIYLIPLLRNLGGEKFIVFASSVANSPK--------------------------TLKAF 48
K YLI LL G+ I+F +V + + L F
Sbjct: 287 KDTYLIYLLNEFAGQSAIIFTRTVNETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKF 346
Query: 49 RGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
R G ++LV +D G+D+ + KTYIHR G ARAG++GH +++
Sbjct: 347 RA-GSREILVATDVAARGLDIPSVDVVLNYDVPQDSKTYIHRVGRTARAGKSGHAISVV 404
>gi|403720926|ref|ZP_10944236.1| putative ATP-dependent RNA helicase [Gordonia rhizosphera NBRC
16068]
gi|403207467|dbj|GAB88567.1| putative ATP-dependent RNA helicase [Gordonia rhizosphera NBRC
16068]
Length = 529
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K LK FR G + VLV +D G+D++ ++ KTYIHR G RAG+ G
Sbjct: 312 KALKRFR-NGDIDVLVATDVAARGIDIDDVTHVINYQCPDDDKTYIHRIGRTGRAGRTGT 370
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 371 AITLVDWDE 379
>gi|357013998|ref|ZP_09078997.1| DEAD/DEAH box helicase domain-containing protein, partial
[Paenibacillus elgii B69]
Length = 406
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + +K FR + +Q+LV +D G+DVE ++ ++YIHR G RAG
Sbjct: 279 AKREQVMKRFR-EAKIQLLVATDIAARGLDVEGITHVFNYDIPHDAESYIHRIGRTGRAG 337
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKR 113
Q G FT + + +Y+ Q++R
Sbjct: 338 QTGKAFTFAAQRD--AMYLEQIER 359
>gi|150391088|ref|YP_001321137.1| DEAD/DEAH box helicase [Alkaliphilus metalliredigens QYMF]
gi|149950950|gb|ABR49478.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
QYMF]
Length = 549
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFAS-SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMD 68
C +K + I L L NLG + + A K +KAF+ K +Q LV +D G+D
Sbjct: 248 CRTKRRAIALNEALINLGYNSDELHGDLTQAKREKVMKAFK-KSKIQYLVATDVAARGLD 306
Query: 69 VERAAYI---------KTYIHRAGPRARAGQNGHCFTLL-PKDEDKLLYMFQVKRFKKLL 118
+E +I ++YIHR G RAG+ G T + +D D+L + +V + +
Sbjct: 307 IEGVTHIFNYDIPQDGESYIHRIGRTGRAGETGMAITFMTSRDRDELKIIEKVIKMDLDV 366
Query: 119 QQA 121
Q++
Sbjct: 367 QKS 369
>gi|39936732|ref|NP_949008.1| ATP-dependent RNA helicase [Rhodopseudomonas palustris CGA009]
gi|192292558|ref|YP_001993163.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris TIE-1]
gi|39650588|emb|CAE29111.1| putative ATP-dependent RNA helicase [Rhodopseudomonas palustris
CGA009]
gi|192286307|gb|ACF02688.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
TIE-1]
Length = 474
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L AFR G ++ LV +D G+DV+ +++ +TY+HR G ARAG +G
Sbjct: 293 RVLAAFR-TGELRTLVATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGRTARAGADGT 351
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKL-LQQADHDSCPVHSIPS 133
+L +E + Y+ +++ K+ L + D + H+ P+
Sbjct: 352 AISLCAGEE--MAYLRDIEKLIKVSLPKEDRRTPGAHAAPT 390
>gi|229017434|ref|ZP_04174336.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH1273]
gi|229023607|ref|ZP_04180100.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH1272]
gi|423391572|ref|ZP_17368798.1| hypothetical protein ICG_03420 [Bacillus cereus BAG1X1-3]
gi|423419874|ref|ZP_17396963.1| hypothetical protein IE3_03346 [Bacillus cereus BAG3X2-1]
gi|228737643|gb|EEL88146.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH1272]
gi|228743856|gb|EEL93956.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH1273]
gi|401101783|gb|EJQ09770.1| hypothetical protein IE3_03346 [Bacillus cereus BAG3X2-1]
gi|401637405|gb|EJS55158.1| hypothetical protein ICG_03420 [Bacillus cereus BAG1X1-3]
Length = 389
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
T++AFRG G +++L+ +D G+D++ ++ YIHR+G R G+ G
Sbjct: 276 TMRAFRG-GKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTV 334
Query: 95 FTLLPKDEDKLLYMF 109
+L+ + E++ L F
Sbjct: 335 VSLVTEQEERKLLQF 349
>gi|341902886|gb|EGT58821.1| hypothetical protein CAEBREN_15104 [Caenorhabditis brenneri]
Length = 554
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCF 95
L AFR K +QV++C+D + G+D+ + KTY+HR G ARAG+ G
Sbjct: 373 LSAFRSKT-LQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYVHRVGRSARAGRFGSAL 431
Query: 96 TLLPKDEDKLLYMFQVKRFKKL 117
+ + + + +LL + KKL
Sbjct: 432 SFVTQYDVELLQAVEQTIGKKL 453
>gi|357401596|ref|YP_004913521.1| hypothetical protein SCAT_4022 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|337768005|emb|CCB76718.1| conserved protein of unknown function [Streptomyces cattleya NRRL
8057 = DSM 46488]
Length = 789
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DV+ ++ KTY+HR G RAG +G
Sbjct: 306 QALRAFR-NGKVDVLVCTDVAARGIDVDGVTHVVNYQCPEDEKTYLHRVGRTGRAGASGT 364
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 365 AITLVDWDD 373
>gi|228900742|ref|ZP_04064960.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
IBL 4222]
gi|434375089|ref|YP_006609733.1| DEAD/DEAH box helicase [Bacillus thuringiensis HD-789]
gi|228858926|gb|EEN03368.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
IBL 4222]
gi|401873646|gb|AFQ25813.1| DEAD/DEAH box helicase [Bacillus thuringiensis HD-789]
Length = 389
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
T++AFRG G +++L+ +D G+D++ ++ YIHR+G R G+ G
Sbjct: 276 TMRAFRG-GKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTV 334
Query: 95 FTLLPKDEDKLLYMF 109
+L+ + E++ L F
Sbjct: 335 VSLVTEQEERKLLQF 349
>gi|115532546|ref|NP_001040788.1| Protein H20J04.4, isoform a [Caenorhabditis elegans]
gi|351065689|emb|CCD61679.1| Protein H20J04.4, isoform a [Caenorhabditis elegans]
Length = 488
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 10/71 (14%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCF 95
L AFR K +QV++C+D + G+D+ + KTYIHR G ARAG+ G
Sbjct: 380 LSAFRSKT-LQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSAL 438
Query: 96 TLLPKDEDKLL 106
+ + + + +LL
Sbjct: 439 SFVTQYDVELL 449
>gi|329847732|ref|ZP_08262760.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
biprosthecum C19]
gi|328842795|gb|EGF92364.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
biprosthecum C19]
Length = 606
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G ++ LV +D G+DV+ +++ + Y+HR G ARAG++G
Sbjct: 286 RALQAFRA-GKVRALVATDIAARGIDVDNVSHVINYELPNVAEAYVHRIGRTARAGKSGV 344
Query: 94 CFTLLPKDEDKLL 106
TL DE +LL
Sbjct: 345 SITLCADDERRLL 357
>gi|323137351|ref|ZP_08072429.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
49242]
gi|322397338|gb|EFX99861.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
49242]
Length = 450
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 27/111 (24%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L AFR KG +VLV +D G+DV+ ++ + Y+HR G ARAG +G
Sbjct: 286 RALDAFR-KGRTRVLVATDIAARGIDVDGVTHVVNYELPETPEAYVHRIGRTARAGASGR 344
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQA------------DHDSCPVHSIP 132
+L E +LL ++ +KL +Q + DS PV P
Sbjct: 345 AISLCDNGERQLL-----RQIEKLTRQTLAFTDRRSAHARNDDSTPVRRGP 390
>gi|294631256|ref|ZP_06709816.1| ATP-dependent RNA helicase DeaD [Streptomyces sp. e14]
gi|292834589|gb|EFF92938.1| ATP-dependent RNA helicase DeaD [Streptomyces sp. e14]
Length = 960
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG G
Sbjct: 354 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGT 412
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 413 AITLVDWDD 421
>gi|66472376|ref|NP_001018522.1| probable ATP-dependent RNA helicase DDX47 [Danio rerio]
gi|63102032|gb|AAH95776.1| Zgc:112350 [Danio rerio]
Length = 512
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 34/140 (24%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F+VF + N+ + R G H Q
Sbjct: 302 SKYKDCYLVSILNELAGNSFMVFCGTCNNTQRVALLLRNLGITAIPLHGQMSQNKRLGAL 361
Query: 56 ---------VLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTL 97
VL+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 362 NKFKSKSRSVLLATDVASRGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITF 421
Query: 98 LPKDEDKLLYMFQVKRFKKL 117
+ + + +L + KKL
Sbjct: 422 VTQYDVELFQRIEALIGKKL 441
>gi|403159589|ref|XP_003320191.2| hypothetical protein PGTG_01103 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168160|gb|EFP75772.2| hypothetical protein PGTG_01103 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 893
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGH 93
K L F+ G + +L+CSD + G+D+ + IK Y+HR G ARA ++G
Sbjct: 771 KLLNKFQS-GEINMLICSDIIARGIDITGVQNVINYDSPIDIKKYVHRVGRTARANEHGR 829
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKL 117
F+L+ E K + F F L
Sbjct: 830 AFSLVESQEAKFVKAFLKTGFGSL 853
>gi|324513918|gb|ADY45697.1| ATP-dependent RNA helicase [Ascaris suum]
Length = 435
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K YL+ +L + G+ IVF ++ A++ KT R G H Q
Sbjct: 214 KYKEAYLVYILNEMAGQTAIVFCATCASTMKTALMLRQLGFGAVPLHGQMSQAKRLGSLN 273
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+LVC+D + G+D+ + K Y+HR G ARAG++G T +
Sbjct: 274 KFKSKVRPILVCTDVASRGLDIPNVDAVLNYDVPSQSKDYVHRVGRTARAGRSGVSITFV 333
Query: 99 PK 100
+
Sbjct: 334 TQ 335
>gi|254821954|ref|ZP_05226955.1| RhlE [Mycobacterium intracellulare ATCC 13950]
Length = 452
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K LKAFR G + VLV +D G+D++ ++ + Y+HR G RAG+ G
Sbjct: 303 KALKAFR-TGDIDVLVATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKTGV 361
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 362 AVTLVDWDE 370
>gi|407704561|ref|YP_006828146.1| stage V sporulation protein S [Bacillus thuringiensis MC28]
Length = 389
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
T++AFRG G +++L+ +D G+D++ ++ YIHR+G R G+ G
Sbjct: 276 TMRAFRG-GKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTV 334
Query: 95 FTLLPKDEDKLLYMF 109
+L+ + E++ L F
Sbjct: 335 VSLVTEQEERKLLQF 349
>gi|379009789|ref|YP_005267602.1| ATP-dependent RNA helicase [Wigglesworthia glossinidia endosymbiont
of Glossina morsitans morsitans (Yale colony)]
gi|375158313|gb|AFA41379.1| ATP-dependent RNA helicase [Wigglesworthia glossinidia endosymbiont
of Glossina morsitans morsitans (Yale colony)]
Length = 581
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
TL F+ K + VLV +D + G+DVE + + YIHR G RAG+ G
Sbjct: 287 TLNKFKIKK-LDVLVATDIASRGLDVEHVNLVINYDAPLDSEAYIHRIGRTGRAGRTGKA 345
Query: 95 FTLLPKDEDKLLYMFQVKRFKKL 117
L E K+LY +KR KL
Sbjct: 346 LLFLENREKKILY--SIKRCTKL 366
>gi|328790575|ref|XP_001122539.2| PREDICTED: ATP-dependent RNA helicase DDX51-like [Apis mellifera]
Length = 600
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 18/85 (21%)
Query: 52 GHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGHCFTLLPKDE 102
G +Q+L+CSDA+ G+D+ + +I YIHRAG RAG++G ++L
Sbjct: 475 GKIQILICSDALARGVDIPDVQLVVSYDLPKHINGYIHRAGRTGRAGKSGTAISILTSK- 533
Query: 103 DKLLYMFQVKRFKKLLQQADHDSCP 127
QV FK +L A H P
Sbjct: 534 -------QVGIFKHMLNNA-HKVVP 550
>gi|228965117|ref|ZP_04126213.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
serovar sotto str. T04001]
gi|402560649|ref|YP_006603373.1| DEAD/DEAH box helicase [Bacillus thuringiensis HD-771]
gi|423362152|ref|ZP_17339654.1| hypothetical protein IC1_04131 [Bacillus cereus VD022]
gi|423563481|ref|ZP_17539757.1| hypothetical protein II5_02885 [Bacillus cereus MSX-A1]
gi|228794550|gb|EEM42060.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
serovar sotto str. T04001]
gi|401078547|gb|EJP86856.1| hypothetical protein IC1_04131 [Bacillus cereus VD022]
gi|401198762|gb|EJR05676.1| hypothetical protein II5_02885 [Bacillus cereus MSX-A1]
gi|401789301|gb|AFQ15340.1| DEAD/DEAH box helicase [Bacillus thuringiensis HD-771]
Length = 389
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
T++AFRG G +++L+ +D G+D++ ++ YIHR+G R G+ G
Sbjct: 276 TMRAFRG-GKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTV 334
Query: 95 FTLLPKDEDKLLYMF 109
+L+ + E++ L F
Sbjct: 335 VSLVTEQEERKLLQF 349
>gi|226184801|dbj|BAH32905.1| putative ATP-dependent RNA helicase [Rhodococcus erythropolis PR4]
Length = 474
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K LK FR G + VLV +D G+D++ ++ KTY+HR G RAG+ G
Sbjct: 261 KALKGFR-NGKVDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGI 319
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 320 AVTLVDWDD 328
>gi|353241604|emb|CCA73408.1| probable DEAD box protein (putative RNA helicase) [Piriformospora
indica DSM 11827]
Length = 458
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 36/119 (30%)
Query: 15 KPIYLIPLLRNLGGEKFIVFASSVANSPK--------------------------TLKAF 48
K + +I L+R+L G+ IVF ++V ++ + +L F
Sbjct: 257 KEVNMITLVRSLSGKSIIVFTNTVNDTIRLTLMLRALNIGAIPLHSKLSQSTRLGSLNKF 316
Query: 49 RGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
R G QVL+ +D G+D+ + + K YIHR G ARAG+ G T +
Sbjct: 317 RAGGR-QVLIATDVAARGLDIPQVDVVINYGVPQNSKDYIHRVGRTARAGRAGKAITFV 374
>gi|229096653|ref|ZP_04227624.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
Rock3-29]
gi|423443073|ref|ZP_17419979.1| hypothetical protein IEA_03403 [Bacillus cereus BAG4X2-1]
gi|423446664|ref|ZP_17423543.1| hypothetical protein IEC_01272 [Bacillus cereus BAG5O-1]
gi|423535561|ref|ZP_17511979.1| hypothetical protein IGI_03393 [Bacillus cereus HuB2-9]
gi|423539192|ref|ZP_17515583.1| hypothetical protein IGK_01284 [Bacillus cereus HuB4-10]
gi|228686859|gb|EEL40766.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
Rock3-29]
gi|401132036|gb|EJQ39684.1| hypothetical protein IEC_01272 [Bacillus cereus BAG5O-1]
gi|401175186|gb|EJQ82388.1| hypothetical protein IGK_01284 [Bacillus cereus HuB4-10]
gi|402413826|gb|EJV46168.1| hypothetical protein IEA_03403 [Bacillus cereus BAG4X2-1]
gi|402461964|gb|EJV93675.1| hypothetical protein IGI_03393 [Bacillus cereus HuB2-9]
Length = 389
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
T++AFRG G +++L+ +D G+D++ ++ YIHR+G R G+ G
Sbjct: 276 TMRAFRG-GKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTV 334
Query: 95 FTLLPKDEDKLLYMF 109
+L+ + E++ L F
Sbjct: 335 VSLVTEQEERKLLQF 349
>gi|406989076|gb|EKE08894.1| hypothetical protein ACD_16C00239G0015 [uncultured bacterium]
Length = 413
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Query: 34 FASSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGP 84
SV N KTLK F+ +G + +L+ SD G+D+E + + YIHR G
Sbjct: 275 ITQSVRN--KTLKDFK-EGKIDLLIASDVAARGLDIEDLPGVINFHVPTTPEDYIHRIGR 331
Query: 85 RARAGQNGHCFTLLPKDEDKLL 106
RAG+ G FTL+ E K L
Sbjct: 332 TGRAGKEGKAFTLVSPHEGKYL 353
>gi|423617660|ref|ZP_17593494.1| hypothetical protein IIO_02986 [Bacillus cereus VD115]
gi|401255310|gb|EJR61533.1| hypothetical protein IIO_02986 [Bacillus cereus VD115]
Length = 389
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
T++AFRG G +++L+ +D G+D++ ++ YIHR+G R G+ G
Sbjct: 276 TMRAFRG-GKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTV 334
Query: 95 FTLLPKDEDKLLYMF 109
+L+ + E++ L F
Sbjct: 335 VSLVTEQEERKLLQF 349
>gi|374704107|ref|ZP_09710977.1| DEAD/DEAH box helicase [Pseudomonas sp. S9]
Length = 443
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+ F+ +G ++VLV +D G+D++ + + Y+HR G RAG G
Sbjct: 285 RALQRFK-QGEVKVLVATDVAARGLDIDDMPLVVNFDLPIVAEDYVHRIGRTGRAGATGQ 343
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADH-DSCPVHSIPSS 134
+L+ DE +LL + +++L + D D P H +P +
Sbjct: 344 AVSLVCADEVQLLAAIE-SMIQQVLPRVDEPDFIPDHRVPQT 384
>gi|228907868|ref|ZP_04071720.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
IBL 200]
gi|228851763|gb|EEM96565.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
IBL 200]
Length = 389
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
T++AFRG G +++L+ +D G+D++ ++ YIHR+G R G+ G
Sbjct: 276 TMRAFRG-GKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTV 334
Query: 95 FTLLPKDEDKLLYMF 109
+L+ + E++ L F
Sbjct: 335 VSLVTEQEERKLLQF 349
>gi|229102742|ref|ZP_04233441.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
Rock3-28]
gi|229115630|ref|ZP_04245035.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus Rock1-3]
gi|423380039|ref|ZP_17357323.1| hypothetical protein IC9_03392 [Bacillus cereus BAG1O-2]
gi|423466172|ref|ZP_17442940.1| hypothetical protein IEK_03359 [Bacillus cereus BAG6O-1]
gi|423545418|ref|ZP_17521776.1| hypothetical protein IGO_01853 [Bacillus cereus HuB5-5]
gi|423624867|ref|ZP_17600645.1| hypothetical protein IK3_03465 [Bacillus cereus VD148]
gi|228667772|gb|EEL23209.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus Rock1-3]
gi|228680674|gb|EEL34852.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
Rock3-28]
gi|401182220|gb|EJQ89357.1| hypothetical protein IGO_01853 [Bacillus cereus HuB5-5]
gi|401256168|gb|EJR62381.1| hypothetical protein IK3_03465 [Bacillus cereus VD148]
gi|401631910|gb|EJS49701.1| hypothetical protein IC9_03392 [Bacillus cereus BAG1O-2]
gi|402416366|gb|EJV48684.1| hypothetical protein IEK_03359 [Bacillus cereus BAG6O-1]
Length = 389
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
T++AFRG G +++L+ +D G+D++ ++ YIHR+G R G+ G
Sbjct: 276 TMRAFRG-GKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTV 334
Query: 95 FTLLPKDEDKLLYMF 109
+L+ + E++ L F
Sbjct: 335 VSLVTEQEERKLLQF 349
>gi|429195540|ref|ZP_19187565.1| ATP-dependent RNA helicase DeaD family protein [Streptomyces
ipomoeae 91-03]
gi|428668727|gb|EKX67725.1| ATP-dependent RNA helicase DeaD family protein [Streptomyces
ipomoeae 91-03]
Length = 916
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG G
Sbjct: 327 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGAKGI 385
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 386 AITLVDWDD 394
>gi|407686365|ref|YP_006801538.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Balearic
Sea AD45']
gi|407289745|gb|AFT94057.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Balearic
Sea AD45']
Length = 596
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 40/134 (29%)
Query: 51 KGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKD 101
+G + +LV +D + G+DVER +++ ++Y+HR G RAG+ G +
Sbjct: 294 QGKIDILVATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHR 353
Query: 102 EDKLLYMFQ----------------------VKRFKKLLQQADHDSCPVHSIPSSSIESL 139
E +LL+ + + RFK+ + +A D SIESL
Sbjct: 354 EKRLLFSIEKTTKQPIEAMPIPSISEINETRLSRFKQSVAEATQD---------DSIESL 404
Query: 140 RPIYKSEYVESQAN 153
PI + E++A+
Sbjct: 405 MPIVEMIKEENEAS 418
>gi|334143126|ref|YP_004536282.1| DEAD/DEAH box helicase domain-containing protein
[Thioalkalimicrobium cyclicum ALM1]
gi|333964037|gb|AEG30803.1| DEAD/DEAH box helicase domain protein [Thioalkalimicrobium cyclicum
ALM1]
Length = 443
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ ++VLV +D G+D++ ++ + Y+HR G RAG G
Sbjct: 284 KALADFKAN-KIRVLVATDIAARGIDIDLLPHVINIDLPNVAEDYVHRIGRTGRAGSKGE 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIE 137
+L+ DE +LL + K L ++ + P HS+P +S++
Sbjct: 343 ALSLVSADEVELLAAIEHLTGKLLPRRFEDGFEPNHSVPETSLD 386
>gi|256374971|ref|YP_003098631.1| DEAD/DEAH box helicase domain-containing protein [Actinosynnema
mirum DSM 43827]
gi|255919274|gb|ACU34785.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
43827]
Length = 609
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLV +D G+DVE ++ KTY+HR G RAG+ G
Sbjct: 334 QALRAFR-SGKIDVLVATDVAARGIDVEGVTHVVNYQCPEDEKTYVHRIGRTGRAGRTGV 392
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 393 AVTLVDWDE 401
>gi|332140113|ref|YP_004425851.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
ecotype']
gi|327550135|gb|AEA96853.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
ecotype']
Length = 589
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 40/134 (29%)
Query: 51 KGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKD 101
+G + +LV +D + G+DVER +++ ++Y+HR G RAG+ G +
Sbjct: 294 QGKIDILVATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHR 353
Query: 102 EDKLLYMFQ----------------------VKRFKKLLQQADHDSCPVHSIPSSSIESL 139
E +LL+ + + RFK+ + +A D SIESL
Sbjct: 354 EKRLLFSIEKTTKQPIEAMPIPSISEINETRLSRFKQSVAEATQD---------DSIESL 404
Query: 140 RPIYKSEYVESQAN 153
PI + E++A+
Sbjct: 405 MPIVEMIKEENEAS 418
>gi|348511400|ref|XP_003443232.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Oreochromis niloticus]
Length = 479
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 34/140 (24%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G FI+F S+ + + R G H Q
Sbjct: 260 SKYKDCYLVSILNELAGNSFIIFCSTCNTAQRVALLLRNLGITAIPLHGQMSQNKRLGAL 319
Query: 56 ---------VLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGHCFTL 97
VL+ +D + G+D+ + + K YIHR G ARAG++G T
Sbjct: 320 NKFKSKSRSVLLATDVASRGLDIPHVDCVINYDIPTHSKDYIHRVGRTARAGRSGKSITF 379
Query: 98 LPKDEDKLLYMFQVKRFKKL 117
+ + + +L + KKL
Sbjct: 380 VTQYDVELFQRIETLIGKKL 399
>gi|406595506|ref|YP_006746636.1| ATP-dependent RNA helicase [Alteromonas macleodii ATCC 27126]
gi|407682465|ref|YP_006797639.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'English
Channel 673']
gi|406372827|gb|AFS36082.1| ATP-dependent RNA helicase [Alteromonas macleodii ATCC 27126]
gi|407244076|gb|AFT73262.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'English
Channel 673']
Length = 596
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 40/134 (29%)
Query: 51 KGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKD 101
+G + +LV +D + G+DVER +++ ++Y+HR G RAG+ G +
Sbjct: 294 QGKIDILVATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHR 353
Query: 102 EDKLLYMFQ----------------------VKRFKKLLQQADHDSCPVHSIPSSSIESL 139
E +LL+ + + RFK+ + +A D SIESL
Sbjct: 354 EKRLLFSIEKTTKQPIEAMPIPSISEINETRLSRFKQSVAEATQD---------DSIESL 404
Query: 140 RPIYKSEYVESQAN 153
PI + E++A+
Sbjct: 405 MPIVEMIKEENEAS 418
>gi|421588772|ref|ZP_16034016.1| ATP dependent RNA helicase [Rhizobium sp. Pop5]
gi|403706463|gb|EJZ21720.1| ATP dependent RNA helicase [Rhizobium sp. Pop5]
Length = 499
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 16/99 (16%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCF 95
L+ FR G++Q+LV SD G+D+ +++ + Y+HR G RAG++G F
Sbjct: 289 LQNFR-DGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAF 347
Query: 96 TLLPKDEDKLLYMFQVKRFKKLL-QQADHDSCPVHSIPS 133
TL+ K + K V +KL+ ++ + S ++S+P+
Sbjct: 348 TLVTKRDTKF-----VDAIEKLIGEKVEWLSGDLNSLPA 381
>gi|319937469|ref|ZP_08011874.1| helicase [Coprobacillus sp. 29_1]
gi|319807309|gb|EFW03918.1| helicase [Coprobacillus sp. 29_1]
Length = 520
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
TLK F+ GH+Q LV +D G+DV+ +++ + YIHR G RA + G
Sbjct: 285 TLKRFKS-GHIQYLVATDVAARGIDVDNISHVINYEMPQDEELYIHRIGRTGRANKKGEA 343
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLLQQAD 122
++L+ E L Q KR +++ D
Sbjct: 344 YSLVTNREKNFLMSIQ-KRTNSHIEKLD 370
>gi|294901652|ref|XP_002777458.1| ATP-dependent RNA helicase DBP6, putative [Perkinsus marinus ATCC
50983]
gi|239885094|gb|EER09274.1| ATP-dependent RNA helicase DBP6, putative [Perkinsus marinus ATCC
50983]
Length = 559
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 27/118 (22%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVCSD G+D + ++ YIHR G RAG+ G
Sbjct: 387 RLLEAFR-TGRIHVLVCSDVAARGLDFREVDHVLQYDVPNNVQGYIHRCGRAGRAGREGC 445
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS--EYVE 149
T+L QVK FK +L++ ++ +E ++P+ + EY E
Sbjct: 446 SSTILVGK--------QVKHFKDMLREE-------KAVTMDKLEQMKPVVEDIPEYQE 488
>gi|229161125|ref|ZP_04289112.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus R309803]
gi|228622221|gb|EEK79060.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus R309803]
Length = 389
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
T++AFRG G +++L+ +D G+D++ ++ YIHR+G R G+ G
Sbjct: 276 TMRAFRG-GKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTV 334
Query: 95 FTLLPKDEDKLLYMF 109
+L+ + E++ L F
Sbjct: 335 VSLVTEQEERKLLQF 349
>gi|443895519|dbj|GAC72865.1| protein kinase [Pseudozyma antarctica T-34]
Length = 860
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 17/79 (21%)
Query: 50 GKGHMQVLVCSDAMTSGMDVERAAYIKTY---------IHRAGPRARAGQNGHCFTLLPK 100
G G + +LVCSD ++ G+D+ ++ +Y +HR G ARAG++G +TL+ +
Sbjct: 735 GNGEIDLLVCSDLISRGIDLPSVEHVISYDAPVDSAKYVHRVGRTARAGKHGDAWTLVEE 794
Query: 101 DEDKLLYMFQVKRFKKLLQ 119
E + FKK+++
Sbjct: 795 QE--------ARHFKKMVR 805
>gi|406666175|ref|ZP_11073944.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus isronensis
B3W22]
gi|405386032|gb|EKB45462.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus isronensis
B3W22]
Length = 410
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 20/87 (22%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAGQNGH 93
K L AFR KG ++L+ +D G+D+ + I+ Y HR+G RAG +G
Sbjct: 276 KALDAFR-KGEARILIATDIAARGLDISGLTHVIHVDVPRTIEQYTHRSGRTGRAGSDGE 334
Query: 94 CFTLLP-KDEDKLLYMFQVKRFKKLLQ 119
TLL KDE K FKK L+
Sbjct: 335 VLTLLSYKDE---------KTFKKWLR 352
>gi|218897115|ref|YP_002445526.1| DEAD/DEAH box helicase [Bacillus cereus G9842]
gi|218541908|gb|ACK94302.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
G9842]
Length = 389
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
T++AFRG G +++L+ +D G+D++ ++ YIHR+G R G+ G
Sbjct: 276 TMRAFRG-GKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTV 334
Query: 95 FTLLPKDEDKLLYMF 109
+L+ + E++ L F
Sbjct: 335 VSLVTEQEERKLLQF 349
>gi|429730318|ref|ZP_19264966.1| DEAD-box ATP-dependent RNA helicase CshA family protein
[Corynebacterium durum F0235]
gi|429147909|gb|EKX90927.1| DEAD-box ATP-dependent RNA helicase CshA family protein
[Corynebacterium durum F0235]
Length = 446
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K+L AFR G +++LV +D G+D++ ++ TY+HR G RAG G
Sbjct: 295 KSLTAFR-SGDIEILVATDVAARGIDIDDVTHVINYQTPDDEMTYVHRIGRTGRAGHTGT 353
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 354 AVTLVGYDE 362
>gi|422597377|ref|ZP_16671651.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|330987668|gb|EGH85771.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 442
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L F+ +++LV +D G+D++ + + YIHR G RAG
Sbjct: 281 ATRQRALDRFKSN-EVKILVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIP 132
G +L+ DE +LL +V + L ++ + D P H +P
Sbjct: 340 LTGEAISLVCADEVELLSAIEVLTRQTLERKEEQDFEPEHRVP 382
>gi|300772029|ref|ZP_07081899.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
33861]
gi|300760332|gb|EFK57158.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
33861]
Length = 450
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 32/153 (20%)
Query: 22 LLRNLGGEKFIVFASSVANSPK--TLKAFRGKGHMQVLVCSDAMTSGMDVERAAY----- 74
L R G E+ V ++ + + ++ AF+ +G++++LV +D G+DV ++
Sbjct: 264 LERKYGTEQVRVIHANKGQNTRINSINAFK-EGNIRILVATDVAARGLDVSNVSHVINFE 322
Query: 75 ----IKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHS 130
I+ Y+HR G RA G T ED + V++ +KL++Q S PV
Sbjct: 323 VPIVIEDYVHRIGRTGRAFNEGDAITFSNPAED-----YYVRKIEKLIRQ----SIPVLE 373
Query: 131 IPSSSIESLRPIYKSEYVESQA------NRKRK 157
IP + K+ + E QA N+K+K
Sbjct: 374 IPEEVF-----VEKTGFEERQAIAREIDNQKKK 401
>gi|115532548|ref|NP_001040789.1| Protein H20J04.4, isoform b [Caenorhabditis elegans]
gi|351065690|emb|CCD61680.1| Protein H20J04.4, isoform b [Caenorhabditis elegans]
Length = 561
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCF 95
L AFR K +QV++C+D + G+D+ + KTYIHR G ARAG+ G
Sbjct: 380 LSAFRSKT-LQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSAL 438
Query: 96 TLLPKDEDKLLYMFQVKRFKKL 117
+ + + + +LL + KKL
Sbjct: 439 SFVTQYDVELLQAVEQVIGKKL 460
>gi|407698821|ref|YP_006823608.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Black Sea
11']
gi|407247968|gb|AFT77153.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Black Sea
11']
Length = 608
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 40/134 (29%)
Query: 51 KGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKD 101
+G + +LV +D + G+DVER +++ ++Y+HR G RAG+ G +
Sbjct: 294 QGKIDILVATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHR 353
Query: 102 EDKLLYMFQ----------------------VKRFKKLLQQADHDSCPVHSIPSSSIESL 139
E +LL+ + + RFK+ + +A D SIESL
Sbjct: 354 EKRLLFSIEKTTKQPIEAMPIPSISEINETRLSRFKQSVAEATQD---------DSIESL 404
Query: 140 RPIYKSEYVESQAN 153
PI + E++A+
Sbjct: 405 MPIVEMIKEENEAS 418
>gi|398962713|ref|ZP_10679340.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM30]
gi|398150614|gb|EJM39198.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM30]
Length = 621
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 20/110 (18%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G +++LV +D G+D+++ ++ + Y+HR G RAG++G
Sbjct: 290 KALADFKA-GEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGE 348
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQ--ADHDSCPVHSIPSSSIESLRP 141
+L+ DE+KLL K +++ +Q AD D + SS+IE+ +P
Sbjct: 349 AISLVAPDEEKLL-----KSIERMTKQKIADGD---LMGFDSSTIEAEKP 390
>gi|340795113|ref|YP_004760576.1| hypothetical protein CVAR_2153 [Corynebacterium variabile DSM
44702]
gi|340535023|gb|AEK37503.1| hypothetical protein CVAR_2153 [Corynebacterium variabile DSM
44702]
Length = 456
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
++L AFR G + ++V +D G+DVE ++ KTY+HR G RAG +G
Sbjct: 305 RSLDAFR-DGSVDIMVATDVAARGIDVEDVTHVINYQVPEDDKTYVHRIGRTGRAGHSGV 363
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 364 AVTLVDWDD 372
>gi|47218719|emb|CAG05691.1| unnamed protein product [Tetraodon nigroviridis]
Length = 727
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 11/75 (14%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
TLK FR KG +VLV ++ G+D+ + ++YIHR+G RAG+ G C
Sbjct: 447 TLKGFR-KGSFEVLVATNVAARGLDIPEVDLVVQCSPPKDVESYIHRSGRTGRAGRTGIC 505
Query: 95 FTLLP-KDEDKLLYM 108
K+ED+L Y+
Sbjct: 506 ICFYQRKEEDQLRYV 520
>gi|256821317|ref|YP_003145280.1| DEAD/DEAH box helicase [Kangiella koreensis DSM 16069]
gi|256794856|gb|ACV25512.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
16069]
Length = 434
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L F+ G + VLV +D G+D+E+ + + Y+HR G RAG+ G
Sbjct: 284 RALSEFKS-GKVTVLVATDVAARGLDIEQMPLVINYDLPNVAEDYVHRIGRTGRAGEKGT 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIES 138
+L+ DE L Q K L ++ D P H +P + ++S
Sbjct: 343 AISLVSADEVDDLRAIQDLIRKPLERRFVEDYEPQHVLPETPLKS 387
>gi|343512818|ref|ZP_08749935.1| ATP-dependent RNA helicase [Vibrio scophthalmi LMG 19158]
gi|343515804|ref|ZP_08752853.1| ATP-dependent RNA helicase [Vibrio sp. N418]
gi|342794506|gb|EGU30271.1| ATP-dependent RNA helicase [Vibrio scophthalmi LMG 19158]
gi|342797618|gb|EGU33262.1| ATP-dependent RNA helicase [Vibrio sp. N418]
Length = 419
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 17/130 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G ++ L+ +D G+D+ + + + YIHR G RAG+ G
Sbjct: 289 KALDDFKA-GKVRALIATDVAARGLDINQLEQVINFDMPFKAEDYIHRIGRTGRAGKKGL 347
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQAN 153
+L+ +DE+ LL + KKL Q+ + S IE L P + S S+++
Sbjct: 348 AVSLMSRDEEYLLEAIERLLDKKLPQEW------LEGYEPSLIEDLEPEHPSRR-NSRSS 400
Query: 154 RKRKIGFKLS 163
KR++ K++
Sbjct: 401 EKRRMKAKMN 410
>gi|407473991|ref|YP_006788391.1| DEAD/DEAH box helicase [Clostridium acidurici 9a]
gi|407050499|gb|AFS78544.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium acidurici 9a]
Length = 382
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 10/76 (13%)
Query: 36 SSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRA 86
SS + K + FR G +Q+LV SD G+D++ +I K Y+HR G A
Sbjct: 278 SSKEDRKKAMDMFRS-GKIQLLVASDLAARGLDIKDVTHIFNLDLPPTSKEYVHRVGRTA 336
Query: 87 RAGQNGHCFTLLPKDE 102
RAG++G +++ K +
Sbjct: 337 RAGKSGTAVSIITKKD 352
>gi|339326701|ref|YP_004686394.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
gi|338166858|gb|AEI77913.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
Length = 656
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 24/108 (22%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL A R +G+++VLV +D G+DV ++ + Y+HR G RAG++G
Sbjct: 360 RTLTALR-RGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGT 418
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRP 141
L+ ++ MFQ KR ++ Q I +S IE L P
Sbjct: 419 AINLVNHND-----MFQWKRIERFTNQ---------RIDASVIEGLEP 452
>gi|393199333|ref|YP_006461175.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
StLB046]
gi|327438664|dbj|BAK15029.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
StLB046]
Length = 410
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 20/87 (22%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAGQNGH 93
K L AFR KG ++L+ +D G+D+ + I+ Y HR+G RAG +G
Sbjct: 276 KALDAFR-KGEARILIATDIAARGLDISGLTHVIHVDVPRTIEQYTHRSGRTGRAGADGE 334
Query: 94 CFTLLP-KDEDKLLYMFQVKRFKKLLQ 119
TLL KDE K FKK L+
Sbjct: 335 VLTLLSYKDE---------KTFKKWLR 352
>gi|257054731|ref|YP_003132563.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
gi|256584603|gb|ACU95736.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
Length = 559
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + +LV +D G+DVE ++ KTY+HR G RAG+ G
Sbjct: 305 QALRAFR-SGKVDILVATDVAARGIDVEGVTHVINYQMPEDEKTYVHRIGRTGRAGRTGV 363
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 364 AITLVDWDE 372
>gi|359419992|ref|ZP_09211936.1| putative ATP-dependent RNA helicase [Gordonia araii NBRC 100433]
gi|358244096|dbj|GAB10005.1| putative ATP-dependent RNA helicase [Gordonia araii NBRC 100433]
Length = 534
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L AFR +G + VLV +D G+D++ ++ KTY+HR G RAG+ G
Sbjct: 322 KALSAFR-EGKIDVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGRTGI 380
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 381 AITLVDWDE 389
>gi|254417807|ref|ZP_05031531.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
gi|196183984|gb|EDX78960.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
Length = 510
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 10/73 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL AF+ KG ++VLV +D G+DV+ +++ + Y+HR G ARAG +G
Sbjct: 300 RTLDAFK-KGKLRVLVATDIAARGIDVDGVSHVVNFELPHVPEAYVHRIGRTARAGADGT 358
Query: 94 CFTLLPKDEDKLL 106
+ + DE KLL
Sbjct: 359 AISFVAGDEMKLL 371
>gi|392415281|ref|YP_006451886.1| DNA/RNA helicase, superfamily II [Mycobacterium chubuense NBB4]
gi|390615057|gb|AFM16207.1| DNA/RNA helicase, superfamily II [Mycobacterium chubuense NBB4]
Length = 493
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K LKAFR G + VLV +D G+D++ ++ ++Y+HR G RAG+ G
Sbjct: 300 KALKAFR-TGEVDVLVATDVAARGIDIDDITHVINFQIPEDEQSYVHRIGRTGRAGKTGI 358
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 359 AVTLVDWDE 367
>gi|343507476|ref|ZP_08744881.1| ATP-dependent RNA helicase [Vibrio ichthyoenteri ATCC 700023]
gi|342798268|gb|EGU33892.1| ATP-dependent RNA helicase [Vibrio ichthyoenteri ATCC 700023]
Length = 419
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 17/130 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G ++ L+ +D G+D+ + + + YIHR G RAG+ G
Sbjct: 289 KALDDFKA-GKVRALIATDVAARGLDINQLEQVINFDMPFKAEDYIHRIGRTGRAGKKGL 347
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQAN 153
+L+ +DE+ LL + KKL Q+ + S IE L P + S S+++
Sbjct: 348 AVSLMSRDEEYLLEAIERLLDKKLPQEW------LEGYEPSLIEDLEPEHPSRR-NSRSS 400
Query: 154 RKRKIGFKLS 163
KR++ K++
Sbjct: 401 EKRRMKAKMN 410
>gi|336451455|ref|ZP_08621893.1| DNA/RNA helicase, superfamily II [Idiomarina sp. A28L]
gi|336281826|gb|EGN75098.1| DNA/RNA helicase, superfamily II [Idiomarina sp. A28L]
Length = 422
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 15/87 (17%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G +Q+LV +D G+D+++ ++ + Y+HR G RAG +G+
Sbjct: 284 KALHEFK-TGKVQILVATDIAARGLDIDQLPFVVNYDLPQVAEDYVHRIGRTGRAGASGN 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQ 120
+L+ DE KLL K ++L++Q
Sbjct: 343 AISLVEGDEVKLL-----KAVERLIKQ 364
>gi|317970136|ref|ZP_07971526.1| putative ATP-dependent RNA helicase [Synechococcus sp. CB0205]
Length = 436
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 10/87 (11%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L F+ G ++VLV +D G+D+ + ++ + Y+HR G RAG +GH
Sbjct: 296 RALAGFK-SGELRVLVATDIAARGIDIHQLPHVVNLDLPNQAEDYVHRIGRTGRAGHSGH 354
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQ 120
+L+ +E +LL + KKL +Q
Sbjct: 355 AVSLVAAEEHELLRAIERLTGKKLPKQ 381
>gi|253997010|ref|YP_003049074.1| DEAD/DEAH box helicase [Methylotenera mobilis JLW8]
gi|253983689|gb|ACT48547.1| DEAD/DEAH box helicase domain protein [Methylotenera mobilis JLW8]
Length = 502
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 24/124 (19%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G M+VLV +D G+D+++ + + Y+HR G RAG +G
Sbjct: 294 KALAQFK-DGSMRVLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGSSGA 352
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQAN 153
+L+ ++E KLL K +KL+++ IP S+E P E +A
Sbjct: 353 AVSLVDREEIKLL-----KDIEKLIKR---------EIPRVSVEGFTPAANPEPEAPRAP 398
Query: 154 RKRK 157
R ++
Sbjct: 399 RPQQ 402
>gi|224009331|ref|XP_002293624.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971024|gb|EED89360.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 2338
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 15/89 (16%)
Query: 44 TLKAFRGKG-----HMQ-VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARA 88
TLK F G+G H+ VL+ +D G++ +I K Y+HRAG ARA
Sbjct: 2015 TLKQFTGEGNKSSQHLSAVLLATDVAARGLNFGSLDWIVQYDPPCETKDYVHRAGRSARA 2074
Query: 89 GQNGHCFTLLPKDEDKLLYMFQVKRFKKL 117
GQ+GH L E + + + Q++ K +
Sbjct: 2075 GQSGHALLFLLPSERQYVEVLQLRGMKDI 2103
>gi|326335491|ref|ZP_08201678.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga sp.
oral taxon 338 str. F0234]
gi|325692257|gb|EGD34209.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga sp.
oral taxon 338 str. F0234]
Length = 572
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 15/86 (17%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAGQNGHCF 95
+K FR K +Q+LV +D G+DV+ + I+TY HR+G RAG++G
Sbjct: 285 MKGFRAK-QIQMLVATDVAARGIDVDDITHVIHYQLPDEIETYTHRSGRTGRAGKSGVSM 343
Query: 96 TLLPKDEDKLLYMFQVKRFKKLLQQA 121
+L K E K ++K ++++Q+
Sbjct: 344 VILTKSETK-----RIKTIERIIQKT 364
>gi|405953609|gb|EKC21239.1| Putative ATP-dependent RNA helicase DDX27 [Crassostrea gigas]
Length = 740
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 37 SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRAR 87
S A +TLK F+ + + VL+ +D G+D+E IK Y+HR G AR
Sbjct: 448 SQAQRLETLKRFK-QADVDVLLATDLAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTAR 506
Query: 88 AGQNGHCFTLLPKDEDKLL 106
AG+ G TL+ + E KLL
Sbjct: 507 AGKKGRSVTLVGEQERKLL 525
>gi|336311025|ref|ZP_08565993.1| ATP-dependent RNA helicase [Shewanella sp. HN-41]
gi|335865440|gb|EGM70463.1| ATP-dependent RNA helicase [Shewanella sp. HN-41]
Length = 409
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L+ F+ +G +QVLV +D G+D+ Y+ + YIHR G RAG G
Sbjct: 286 KVLQDFK-QGKIQVLVATDVAARGLDIVELQYVINFELPFIAEDYIHRIGRTGRAGNAGL 344
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQ 120
TL +++ LL + K+L QQ
Sbjct: 345 AITLFSQEDALLLEEVEAVLDKRLPQQ 371
>gi|427416341|ref|ZP_18906524.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 7375]
gi|425759054|gb|EKU99906.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 7375]
Length = 426
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 15/93 (16%)
Query: 37 SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRAR 87
S A + L+ F+ + ++VLV +D + G+D+++ ++ + Y+HR G R
Sbjct: 279 SQAARTRALRDFK-QSKVRVLVATDVASRGLDIDQLPHVVNFELPNVPEDYVHRIGRTGR 337
Query: 88 AGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQ 120
AG G +L+ DE LL KR +KLL++
Sbjct: 338 AGNEGQAISLVSSDEQSLL-----KRIEKLLKR 365
>gi|423435609|ref|ZP_17412590.1| hypothetical protein IE9_01790 [Bacillus cereus BAG4X12-1]
gi|401124282|gb|EJQ32047.1| hypothetical protein IE9_01790 [Bacillus cereus BAG4X12-1]
Length = 389
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 11/73 (15%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
T++AFRG G +++L+ +D G+D++ ++ YIHR+G R G+ G
Sbjct: 276 TMRAFRG-GKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTV 334
Query: 95 FTLL-PKDEDKLL 106
+L+ P++E KLL
Sbjct: 335 VSLVTPQEERKLL 347
>gi|226941463|ref|YP_002796537.1| RhlE4 [Laribacter hongkongensis HLHK9]
gi|226716390|gb|ACO75528.1| RhlE4 [Laribacter hongkongensis HLHK9]
Length = 457
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 10/76 (13%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
TL AF+ G +++LV +D G+DV ++ + Y+HR G RAGQ+G
Sbjct: 291 TLAAFK-DGKLRILVATDVAARGLDVSDLPFVVNFDLPNSPEDYVHRIGRTGRAGQSGVA 349
Query: 95 FTLLPKDEDKLLYMFQ 110
+L+ +E KLL +
Sbjct: 350 ISLMDAEEQKLLEAIE 365
>gi|423642829|ref|ZP_17618447.1| hypothetical protein IK9_02774 [Bacillus cereus VD166]
gi|401275770|gb|EJR81731.1| hypothetical protein IK9_02774 [Bacillus cereus VD166]
Length = 389
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 11/73 (15%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
T++AFRG G +++L+ +D G+D++ ++ YIHR+G R G+ G
Sbjct: 276 TMRAFRG-GKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTV 334
Query: 95 FTLL-PKDEDKLL 106
+L+ P++E KLL
Sbjct: 335 VSLVTPQEERKLL 347
>gi|383820552|ref|ZP_09975808.1| DEAD/DEAH box helicase [Mycobacterium phlei RIVM601174]
gi|383334942|gb|EID13375.1| DEAD/DEAH box helicase [Mycobacterium phlei RIVM601174]
Length = 468
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K LKAFR G + VLV +D G+D++ ++ + Y+HR G RAG+ G
Sbjct: 261 KALKAFR-TGEIDVLVATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKTGV 319
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 320 AVTLVDWDE 328
>gi|357391766|ref|YP_004906607.1| putative ATP-dependent RNA helicase [Kitasatospora setae KM-6054]
gi|311898243|dbj|BAJ30651.1| putative ATP-dependent RNA helicase [Kitasatospora setae KM-6054]
Length = 884
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG +G
Sbjct: 267 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQCTDDEKTYLHRIGRTGRAGASGT 325
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 326 AVTLVDWDD 334
>gi|290957574|ref|YP_003488756.1| helicase [Streptomyces scabiei 87.22]
gi|260647100|emb|CBG70199.1| putative helicase [Streptomyces scabiei 87.22]
Length = 865
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG G
Sbjct: 325 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGAKGI 383
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 384 AITLVDWDD 392
>gi|113868657|ref|YP_727146.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
gi|113527433|emb|CAJ93778.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
Length = 646
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 24/108 (22%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL A R +G+++VLV +D G+DV ++ + Y+HR G RAG++G
Sbjct: 360 RTLTALR-RGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGT 418
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRP 141
L+ ++ MFQ KR ++ Q I +S IE L P
Sbjct: 419 AINLVNHND-----MFQWKRIERFTNQ---------RIDASVIEGLEP 452
>gi|87118170|ref|ZP_01074069.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
sp. MED121]
gi|86165804|gb|EAQ67070.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
sp. MED121]
Length = 459
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 24/107 (22%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSP-------KTLKAFRGKGHMQVLVCSDAMT 64
+KL + L LL G F + N K + +F +GH Q+LV +D +
Sbjct: 269 TKLDTVRLASLLEEKG------FTTQALNGDLTQSARNKVMDSF-ARGHFQILVSTDLAS 321
Query: 65 SGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL-PKD 101
G+D+ ++ + Y+HR G RAG G F+L+ PKD
Sbjct: 322 RGLDIANVTHVINFDIPKHSEEYVHRTGRTGRAGFQGDAFSLVGPKD 368
>gi|453078573|ref|ZP_21981300.1| dead/deah box helicase [Rhodococcus triatomae BKS 15-14]
gi|452756263|gb|EME14678.1| dead/deah box helicase [Rhodococcus triatomae BKS 15-14]
Length = 552
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K LKAFR G + VLV +D G+D++ ++ KTY+HR G RAG+ G
Sbjct: 341 KALKAFR-TGKVDVLVATDVAARGIDIDDVTHVVNYQCPEDEKTYVHRIGRTGRAGRTGT 399
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 400 AVTLVDWDD 408
>gi|346994009|ref|ZP_08862081.1| DEAD/DEAH box helicase-like protein [Ruegeria sp. TW15]
Length = 419
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ +KAFR G + VLV +D G+D+ AY+ Y+HR G ARAG+ G
Sbjct: 286 RAIKAFRA-GEINVLVATDVAARGIDIPGVAYVINYDLPEVPDNYVHRIGRTARAGREGE 344
Query: 94 CFTLLPKDEDKLLYMFQ 110
+E LL Q
Sbjct: 345 AIAFCSAEEVDLLRQIQ 361
>gi|423637144|ref|ZP_17612797.1| hypothetical protein IK7_03553 [Bacillus cereus VD156]
gi|401274015|gb|EJR79994.1| hypothetical protein IK7_03553 [Bacillus cereus VD156]
Length = 389
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 11/73 (15%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
T++AFRG G +++L+ +D G+D++ ++ YIHR+G R G+ G
Sbjct: 276 TMRAFRG-GKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTV 334
Query: 95 FTLL-PKDEDKLL 106
+L+ P++E KLL
Sbjct: 335 VSLVTPQEERKLL 347
>gi|359770371|ref|ZP_09273851.1| putative ATP-dependent RNA helicase [Gordonia effusa NBRC 100432]
gi|359312522|dbj|GAB16629.1| putative ATP-dependent RNA helicase [Gordonia effusa NBRC 100432]
Length = 566
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K LK FR G + VLV +D G+D++ ++ KTY+HR G RAG+ G
Sbjct: 348 KALKKFR-DGTINVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGRTGT 406
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 407 AITLVDWDE 415
>gi|229109595|ref|ZP_04239184.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
Rock1-15]
gi|423648052|ref|ZP_17623622.1| hypothetical protein IKA_01839 [Bacillus cereus VD169]
gi|228673843|gb|EEL29098.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
Rock1-15]
gi|401285232|gb|EJR91082.1| hypothetical protein IKA_01839 [Bacillus cereus VD169]
Length = 389
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 11/73 (15%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
T++AFRG G +++L+ +D G+D++ ++ YIHR+G R G+ G
Sbjct: 276 TMRAFRG-GKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTV 334
Query: 95 FTLL-PKDEDKLL 106
+L+ P++E KLL
Sbjct: 335 VSLVTPQEERKLL 347
>gi|229155721|ref|ZP_04283827.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus ATCC
4342]
gi|228627707|gb|EEK84428.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus ATCC
4342]
Length = 389
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 11/73 (15%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
T++AFRG G +++L+ +D G+D++ ++ YIHR+G R G+ G
Sbjct: 276 TMRAFRG-GKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTV 334
Query: 95 FTLL-PKDEDKLL 106
+L+ P++E KLL
Sbjct: 335 VSLVTPQEERKLL 347
>gi|158321361|ref|YP_001513868.1| DEAD/DEAH box helicase [Alkaliphilus oremlandii OhILAs]
gi|158141560|gb|ABW19872.1| DEAD/DEAH box helicase domain protein [Alkaliphilus oremlandii
OhILAs]
Length = 461
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 20/140 (14%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A K +K FR +Q+LV +D G+DVE ++ + YIHR G RAG
Sbjct: 278 AKREKVMKEFRN-AKLQILVATDVAARGIDVEGITHVFNYDIPQDVEGYIHRIGRTGRAG 336
Query: 90 QNGHCFTL-LPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYV 148
G T PKD D L M + +K+++ + P +ES+ ++ E
Sbjct: 337 DKGMAITFAAPKDRDS-LAMIERGINQKIVK--------ITFKPEGRVESIEETFEREAK 387
Query: 149 ESQANRKRKIGFKLSRMVKG 168
+ + + + FK ++ G
Sbjct: 388 KREERKNKDNKFKDNQRKNG 407
>gi|84494615|ref|ZP_00993734.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
gi|84384108|gb|EAP99988.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
Length = 540
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLV +D G+DVE ++ KTY+HR G RAGQ G
Sbjct: 327 QALRAFR-SGKVDVLVATDVAARGIDVENVTHVINYQCPEDEKTYVHRIGRTGRAGQTGI 385
Query: 94 CFTLLPKDE 102
T + D+
Sbjct: 386 AVTFVDWDD 394
>gi|77360862|ref|YP_340437.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
gi|76875773|emb|CAI86994.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
[Pseudoalteromonas haloplanktis TAC125]
Length = 466
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 59/111 (53%), Gaps = 15/111 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G ++VLV +D + G+D+ ++ + Y+HR G RAG +GH
Sbjct: 284 KALDGFK-SGEVRVLVATDIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGH 342
Query: 94 CFTLLPKDEDKLLYMFQVKRF-KKLLQQADHDSC-PVHSIPSSSIESLRPI 142
+ + ++ + ++ ++RF +L+ +A + PV+ +P +++ RPI
Sbjct: 343 AISFVTTED--AVDLYGIERFIGELIPRATEEGFEPVNPVPERDLDA-RPI 390
>gi|293603664|ref|ZP_06686084.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
43553]
gi|292817932|gb|EFF76993.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
43553]
Length = 493
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 19/139 (13%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A+ K L+AF+ G ++VLV +D G+DV + + Y+HR G RAG
Sbjct: 300 ADRMKALEAFKA-GDLEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAG 358
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVE 149
+G L DE++ L + K K+ + + D +P+ ++ R +SE
Sbjct: 359 ASGEAIALFTPDEERFLLDIE-KLIKREVPRGTLD------LPADAVA--RSHRRSEDRP 409
Query: 150 SQANRKRKIGFKLSRMVKG 168
S ++R+ + G + SR +G
Sbjct: 410 SSSSREGREGGRESRGERG 428
>gi|289571435|ref|ZP_06451662.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase rhlE [Mycobacterium
tuberculosis T17]
gi|289545189|gb|EFD48837.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase rhlE [Mycobacterium
tuberculosis T17]
Length = 489
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K LKAFR G + VLV +D G+D++ ++ K Y+HR G RAG+ G
Sbjct: 311 KALKAFR-TGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGV 369
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 370 AVTLVDWDE 378
>gi|255071295|ref|XP_002507729.1| predicted protein [Micromonas sp. RCC299]
gi|226523004|gb|ACO68987.1| predicted protein [Micromonas sp. RCC299]
Length = 523
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 14/91 (15%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
++LK FR G +LV SDA T G+D E KTY+HR G ARA + G
Sbjct: 366 ESLKLFRS-GRCSLLVASDAATRGLDFEHVGVTISYDVPTHPKTYVHRVGRAARAQRRGL 424
Query: 94 CFTLL-PKDEDKLLYMFQ---VKRFKKLLQQ 120
+T+ P + DK M V++ +LQQ
Sbjct: 425 AYTICRPTEVDKFHLMLTNIGVRKEDNVLQQ 455
>gi|30020240|ref|NP_831871.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
gi|30262130|ref|NP_844507.1| DEAD/DEAH box helicase [Bacillus anthracis str. Ames]
gi|47527402|ref|YP_018751.1| DEAD/DEAH box helicase [Bacillus anthracis str. 'Ames Ancestor']
gi|47566879|ref|ZP_00237597.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
G9241]
gi|49184972|ref|YP_028224.1| DEAD/DEAH box helicase [Bacillus anthracis str. Sterne]
gi|49481521|ref|YP_036269.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|65319414|ref|ZP_00392373.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis
str. A2012]
gi|118477548|ref|YP_894699.1| DEAD/DEAH box helicase [Bacillus thuringiensis str. Al Hakam]
gi|165870274|ref|ZP_02214930.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0488]
gi|167632786|ref|ZP_02391112.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0442]
gi|167638259|ref|ZP_02396536.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0193]
gi|170686363|ref|ZP_02877584.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0465]
gi|170706085|ref|ZP_02896547.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0389]
gi|177650849|ref|ZP_02933746.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0174]
gi|190567856|ref|ZP_03020767.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Tsiankovskii-I]
gi|196036903|ref|ZP_03104288.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
W]
gi|196046115|ref|ZP_03113343.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB108]
gi|206972062|ref|ZP_03233010.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH1134]
gi|206975047|ref|ZP_03235961.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
H3081.97]
gi|217959604|ref|YP_002338156.1| DEAD/DEAH box family ATP-dependent RNA helicase [Bacillus cereus
AH187]
gi|218231862|ref|YP_002366836.1| ATP-dependent RNA helicase [Bacillus cereus B4264]
gi|218903259|ref|YP_002451093.1| ATP-dependent RNA helicase [Bacillus cereus AH820]
gi|222095747|ref|YP_002529804.1| DEAD/DEAH box helicase [Bacillus cereus Q1]
gi|225864093|ref|YP_002749471.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB102]
gi|227815071|ref|YP_002815080.1| ATP-dependent RNA helicase [Bacillus anthracis str. CDC 684]
gi|228914725|ref|ZP_04078334.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228927197|ref|ZP_04090260.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228933452|ref|ZP_04096305.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228945743|ref|ZP_04108090.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228956133|ref|ZP_04118019.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228985230|ref|ZP_04145395.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229043887|ref|ZP_04191583.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH676]
gi|229069681|ref|ZP_04202967.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus F65185]
gi|229079319|ref|ZP_04211863.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus Rock4-2]
gi|229121683|ref|ZP_04250906.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus 95/8201]
gi|229127547|ref|ZP_04256538.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
BDRD-Cer4]
gi|229138830|ref|ZP_04267411.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
BDRD-ST26]
gi|229144746|ref|ZP_04273145.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
BDRD-ST24]
gi|229150373|ref|ZP_04278590.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus m1550]
gi|229178524|ref|ZP_04305889.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus 172560W]
gi|229184351|ref|ZP_04311558.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus BGSC
6E1]
gi|229190238|ref|ZP_04317240.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus ATCC
10876]
gi|229196367|ref|ZP_04323115.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus m1293]
gi|229600206|ref|YP_002866487.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0248]
gi|254684699|ref|ZP_05148559.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
anthracis str. CNEVA-9066]
gi|254720956|ref|ZP_05182747.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
anthracis str. A1055]
gi|254737143|ref|ZP_05194847.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
anthracis str. Western North America USA6153]
gi|254743671|ref|ZP_05201356.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
anthracis str. Kruger B]
gi|254751458|ref|ZP_05203495.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
anthracis str. Vollum]
gi|254758331|ref|ZP_05210358.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
anthracis str. Australia 94]
gi|296502724|ref|YP_003664424.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
gi|301053653|ref|YP_003791864.1| ATP-dependent RNA helicase [Bacillus cereus biovar anthracis str.
CI]
gi|365160482|ref|ZP_09356647.1| hypothetical protein HMPREF1014_02110 [Bacillus sp. 7_6_55CFAA_CT2]
gi|375284113|ref|YP_005104551.1| ATP-dependent RNA helicase [Bacillus cereus NC7401]
gi|376266008|ref|YP_005118720.1| ATP-dependent RNA helicase YfmL [Bacillus cereus F837/76]
gi|384180083|ref|YP_005565845.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|386735875|ref|YP_006209056.1| ATP-dependent RNA helicase [Bacillus anthracis str. H9401]
gi|402557620|ref|YP_006598891.1| ATP-dependent RNA helicase [Bacillus cereus FRI-35]
gi|421508539|ref|ZP_15955452.1| ATP-dependent RNA helicase [Bacillus anthracis str. UR-1]
gi|421635932|ref|ZP_16076531.1| ATP-dependent RNA helicase [Bacillus anthracis str. BF1]
gi|423356001|ref|ZP_17333624.1| hypothetical protein IAU_04073 [Bacillus cereus IS075]
gi|423372104|ref|ZP_17349444.1| hypothetical protein IC5_01160 [Bacillus cereus AND1407]
gi|423414191|ref|ZP_17391311.1| hypothetical protein IE1_03495 [Bacillus cereus BAG3O-2]
gi|423424195|ref|ZP_17401226.1| hypothetical protein IE5_01884 [Bacillus cereus BAG3X2-2]
gi|423430024|ref|ZP_17407028.1| hypothetical protein IE7_01840 [Bacillus cereus BAG4O-1]
gi|423508057|ref|ZP_17484622.1| hypothetical protein IG1_05596 [Bacillus cereus HD73]
gi|423552151|ref|ZP_17528478.1| hypothetical protein IGW_02782 [Bacillus cereus ISP3191]
gi|423568961|ref|ZP_17545207.1| hypothetical protein II7_02183 [Bacillus cereus MSX-A12]
gi|423576151|ref|ZP_17552270.1| hypothetical protein II9_03372 [Bacillus cereus MSX-D12]
gi|423587430|ref|ZP_17563517.1| hypothetical protein IIE_02842 [Bacillus cereus VD045]
gi|423606104|ref|ZP_17581997.1| hypothetical protein IIK_02685 [Bacillus cereus VD102]
gi|423654928|ref|ZP_17630227.1| hypothetical protein IKG_01916 [Bacillus cereus VD200]
gi|449089013|ref|YP_007421454.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar kurstaki
str. HD73]
gi|29895790|gb|AAP09072.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
gi|30256756|gb|AAP25993.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Ames]
gi|47502550|gb|AAT31226.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. 'Ames Ancestor']
gi|47556508|gb|EAL14841.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
G9241]
gi|49178899|gb|AAT54275.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Sterne]
gi|49333077|gb|AAT63723.1| ATP-dependent RNA helicase (D-E-A-D box family) [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|118416773|gb|ABK85192.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
thuringiensis str. Al Hakam]
gi|164714162|gb|EDR19683.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0488]
gi|167513560|gb|EDR88929.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0193]
gi|167531598|gb|EDR94263.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0442]
gi|170129087|gb|EDS97952.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0389]
gi|170669439|gb|EDT20181.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0465]
gi|172083310|gb|EDT68371.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0174]
gi|190560911|gb|EDV14885.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Tsiankovskii-I]
gi|195990488|gb|EDX54471.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
W]
gi|196023170|gb|EDX61849.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB108]
gi|206732985|gb|EDZ50159.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH1134]
gi|206746468|gb|EDZ57861.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
H3081.97]
gi|217065161|gb|ACJ79411.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH187]
gi|218159819|gb|ACK59811.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
B4264]
gi|218535161|gb|ACK87559.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH820]
gi|221239805|gb|ACM12515.1| ATP-dependent RNA helicase (D-E-A-D box family) [Bacillus cereus
Q1]
gi|225790511|gb|ACO30728.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB102]
gi|227006946|gb|ACP16689.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. CDC 684]
gi|228587221|gb|EEK45291.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus m1293]
gi|228593222|gb|EEK51039.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus ATCC
10876]
gi|228599147|gb|EEK56760.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus BGSC
6E1]
gi|228604928|gb|EEK62384.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus 172560W]
gi|228633070|gb|EEK89682.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus m1550]
gi|228638707|gb|EEK95138.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
BDRD-ST24]
gi|228644746|gb|EEL00997.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
BDRD-ST26]
gi|228655893|gb|EEL11740.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
BDRD-Cer4]
gi|228661727|gb|EEL17344.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus 95/8201]
gi|228703987|gb|EEL56429.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus Rock4-2]
gi|228713421|gb|EEL65310.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus F65185]
gi|228725418|gb|EEL76679.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH676]
gi|228774525|gb|EEM22926.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228803570|gb|EEM50303.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228813964|gb|EEM60238.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228826181|gb|EEM71961.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228832523|gb|EEM78097.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228845044|gb|EEM90086.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|229264614|gb|ACQ46251.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0248]
gi|296323776|gb|ADH06704.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
gi|300375822|gb|ADK04726.1| ATP-dependent RNA helicase [Bacillus cereus biovar anthracis str.
CI]
gi|324326167|gb|ADY21427.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|358352639|dbj|BAL17811.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
NC7401]
gi|363623100|gb|EHL74228.1| hypothetical protein HMPREF1014_02110 [Bacillus sp. 7_6_55CFAA_CT2]
gi|364511808|gb|AEW55207.1| ATP-dependent RNA helicase YfmL [Bacillus cereus F837/76]
gi|384385727|gb|AFH83388.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. H9401]
gi|401080467|gb|EJP88754.1| hypothetical protein IAU_04073 [Bacillus cereus IS075]
gi|401098507|gb|EJQ06520.1| hypothetical protein IE1_03495 [Bacillus cereus BAG3O-2]
gi|401100280|gb|EJQ08276.1| hypothetical protein IC5_01160 [Bacillus cereus AND1407]
gi|401114479|gb|EJQ22339.1| hypothetical protein IE5_01884 [Bacillus cereus BAG3X2-2]
gi|401121052|gb|EJQ28847.1| hypothetical protein IE7_01840 [Bacillus cereus BAG4O-1]
gi|401186093|gb|EJQ93181.1| hypothetical protein IGW_02782 [Bacillus cereus ISP3191]
gi|401207147|gb|EJR13926.1| hypothetical protein II9_03372 [Bacillus cereus MSX-D12]
gi|401207745|gb|EJR14523.1| hypothetical protein II7_02183 [Bacillus cereus MSX-A12]
gi|401228008|gb|EJR34534.1| hypothetical protein IIE_02842 [Bacillus cereus VD045]
gi|401242195|gb|EJR48571.1| hypothetical protein IIK_02685 [Bacillus cereus VD102]
gi|401293972|gb|EJR99604.1| hypothetical protein IKG_01916 [Bacillus cereus VD200]
gi|401798830|gb|AFQ12689.1| ATP-dependent RNA helicase [Bacillus cereus FRI-35]
gi|401821465|gb|EJT20622.1| ATP-dependent RNA helicase [Bacillus anthracis str. UR-1]
gi|402441877|gb|EJV73822.1| hypothetical protein IG1_05596 [Bacillus cereus HD73]
gi|403396460|gb|EJY93697.1| ATP-dependent RNA helicase [Bacillus anthracis str. BF1]
gi|449022770|gb|AGE77933.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar kurstaki
str. HD73]
Length = 389
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 11/73 (15%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
T++AFRG G +++L+ +D G+D++ ++ YIHR+G R G+ G
Sbjct: 276 TMRAFRG-GKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTV 334
Query: 95 FTLL-PKDEDKLL 106
+L+ P++E KLL
Sbjct: 335 VSLVTPQEERKLL 347
>gi|365860402|ref|ZP_09400212.1| putative ATP-dependent RNA helicase [Streptomyces sp. W007]
gi|364010132|gb|EHM31062.1| putative ATP-dependent RNA helicase [Streptomyces sp. W007]
Length = 747
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG G
Sbjct: 267 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGAKGI 325
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 326 AITLVDWDD 334
>gi|114046344|ref|YP_736894.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-7]
gi|113887786|gb|ABI41837.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
Length = 549
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G ++VLV +D G+D+++ + + Y+HR G RAG +G
Sbjct: 284 KALADFK-SGEVRVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQ 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSI 136
+L+ +E KLL + + L +Q P H++P S++
Sbjct: 343 AVSLVSSEEFKLLRDIERLINRVLERQEIEGFGPAHALPESTL 385
>gi|42781255|ref|NP_978502.1| DEAD/DEAH box helicase [Bacillus cereus ATCC 10987]
gi|42737177|gb|AAS41110.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
ATCC 10987]
Length = 389
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 11/73 (15%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
T++AFRG G +++L+ +D G+D++ ++ YIHR+G R G+ G
Sbjct: 276 TMRAFRG-GKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTV 334
Query: 95 FTLL-PKDEDKLL 106
+L+ P++E KLL
Sbjct: 335 VSLVTPQEERKLL 347
>gi|393770770|ref|ZP_10359248.1| ATP-dependent RNA helicase [Novosphingobium sp. Rr 2-17]
gi|392723877|gb|EIZ81264.1| ATP-dependent RNA helicase [Novosphingobium sp. Rr 2-17]
Length = 426
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L AFR G +QVLV +D G+DV+ ++ ++Y+HR G RAG++G
Sbjct: 287 RALDAFRA-GDVQVLVATDIAARGIDVDTVTHVFNHDLPSLPESYVHRIGRTGRAGRSGF 345
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123
TL ++ L+ + + L + DH
Sbjct: 346 AITLCDAEQRAWLHDVERTIGRTLTVKDDH 375
>gi|396489645|ref|XP_003843156.1| hypothetical protein LEMA_P089160.1 [Leptosphaeria maculans JN3]
gi|312219734|emb|CBX99677.1| hypothetical protein LEMA_P089160.1 [Leptosphaeria maculans JN3]
Length = 705
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 10/82 (12%)
Query: 30 KFIVFASSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIH 80
K + A + S K L++F G G +++L+ SDA + G+D+ + I +Y+H
Sbjct: 568 KTMTRALTAEASRKLLRSF-GTGAIKILIASDAASRGLDIPSITHVINYDLPTSITSYVH 626
Query: 81 RAGPRARAGQNGHCFTLLPKDE 102
R G ARAG+ G +TL K E
Sbjct: 627 RVGRTARAGKVGEAWTLFTKTE 648
>gi|88812119|ref|ZP_01127371.1| probable atp-dependent rna helicase protein [Nitrococcus mobilis
Nb-231]
gi|88790623|gb|EAR21738.1| probable atp-dependent rna helicase protein [Nitrococcus mobilis
Nb-231]
Length = 429
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 29/129 (22%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L+ F+ +G ++VLV +D G+D+E ++ + Y+HR G RAG G
Sbjct: 283 KALQDFK-RGRVRVLVATDIAARGLDIEALPHVVNYELSNIAEDYVHRIGRTGRAGSQGQ 341
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEY-----V 148
+L+ DE K L + +LL + +P + IE P+ +E
Sbjct: 342 AVSLVSADERKHLANIE-----RLLGR---------RLPCTVIEGFEPVAANEAPSLNPT 387
Query: 149 ESQANRKRK 157
Q NR R+
Sbjct: 388 RPQPNRARR 396
>gi|228939265|ref|ZP_04101858.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228972144|ref|ZP_04132760.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228978757|ref|ZP_04139128.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
Bt407]
gi|384186132|ref|YP_005572028.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410674425|ref|YP_006926796.1| putative ATP-dependent RNA helicase YfmL [Bacillus thuringiensis
Bt407]
gi|452198463|ref|YP_007478544.1| ATP-dependent RNA helicase YfmL [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228781018|gb|EEM29225.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
Bt407]
gi|228787628|gb|EEM35591.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228820460|gb|EEM66492.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|326939841|gb|AEA15737.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|409173554|gb|AFV17859.1| putative ATP-dependent RNA helicase YfmL [Bacillus thuringiensis
Bt407]
gi|452103856|gb|AGG00796.1| ATP-dependent RNA helicase YfmL [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 389
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 11/73 (15%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
T++AFRG G +++L+ +D G+D++ ++ YIHR+G R G+ G
Sbjct: 276 TMRAFRG-GKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTV 334
Query: 95 FTLL-PKDEDKLL 106
+L+ P++E KLL
Sbjct: 335 VSLVTPQEERKLL 347
>gi|19075832|ref|NP_588332.1| ATP-dependent RNA helicase Dbp6 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74662371|sp|Q76PD3.1|DBP6_SCHPO RecName: Full=ATP-dependent RNA helicase dbp6
gi|3581903|emb|CAA20842.1| ATP-dependent RNA helicase Dbp6 (predicted) [Schizosaccharomyces
pombe]
Length = 604
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 33 VFASSVA-NSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRA 82
+F SS++ + K + + G + +LVCSD M G+DV + ++Y+HR
Sbjct: 466 LFTSSLSRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRI 525
Query: 83 GPRARAGQNGHCFTLLPKDE 102
G ARAG+ G +TL+ E
Sbjct: 526 GRTARAGREGFAWTLVQSHE 545
>gi|301610482|ref|XP_002934775.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Xenopus (Silurana) tropicalis]
Length = 448
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 34/129 (26%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ + R G H Q
Sbjct: 242 SKFKDSYLVYILNELAGNSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGSL 301
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 302 NKFKAKSRSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITF 361
Query: 98 LPKDEDKLL 106
+ + + +L
Sbjct: 362 VSQYDVELF 370
>gi|302038481|ref|YP_003798803.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
gi|300606545|emb|CBK42878.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
Length = 442
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 17/108 (15%)
Query: 22 LLRNLGGEKFIVFA----SSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI-- 75
L LGGE V A S A +TL AFR G ++ LV +D G+DV + +
Sbjct: 264 LAARLGGEPASVGAITGNHSQAQRERTLTAFR-SGRLRTLVATDVAARGLDVPSVSQVIH 322
Query: 76 -------KTYIHRAGPRARAGQNGHCFTLL-PKDEDKLLYMFQVKRFK 115
+Y+HR G RA ++G +L PK+E + Y+ V+R +
Sbjct: 323 YELPGNPTSYVHRTGRTGRAERSGATLLILSPKEEHE--YLAMVRRLR 368
>gi|423383524|ref|ZP_17360780.1| hypothetical protein ICE_01270 [Bacillus cereus BAG1X1-2]
gi|423530025|ref|ZP_17506470.1| hypothetical protein IGE_03577 [Bacillus cereus HuB1-1]
gi|401643345|gb|EJS61045.1| hypothetical protein ICE_01270 [Bacillus cereus BAG1X1-2]
gi|402446540|gb|EJV78398.1| hypothetical protein IGE_03577 [Bacillus cereus HuB1-1]
Length = 389
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 11/73 (15%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
T++AFRG G +++L+ +D G+D++ ++ YIHR+G R G+ G
Sbjct: 276 TMRAFRG-GKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTV 334
Query: 95 FTLL-PKDEDKLL 106
+L+ P++E KLL
Sbjct: 335 VSLVTPQEERKLL 347
>gi|254466325|ref|ZP_05079736.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium Y4I]
gi|206687233|gb|EDZ47715.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium Y4I]
Length = 467
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 21/108 (19%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL +FR +G +++LV SD G+DV +++ + Y+HR G RAG+ G
Sbjct: 293 RTLDSFR-EGSLRILVASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGREGK 351
Query: 94 CFTL-LPKDEDKL-----LYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
T+ P+DE L L +KR + ++ PV PS S
Sbjct: 352 AITICTPRDEKALDAVEKLIQKDIKRLENPVKPE-----PVQEKPSRS 394
>gi|328768512|gb|EGF78558.1| hypothetical protein BATDEDRAFT_35707 [Batrachochytrium
dendrobatidis JAM81]
Length = 761
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 11/72 (15%)
Query: 37 SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERA----------AYIKTYIHRAGPRA 86
SV+ K + F+ G + L+CSD M GMD+ + + IK+Y+HR G A
Sbjct: 514 SVSKRQKLISMFKA-GQILGLICSDIMARGMDLGESVKVVINYSVPSRIKSYVHRIGRTA 572
Query: 87 RAGQNGHCFTLL 98
RAG++G +T L
Sbjct: 573 RAGRDGIAYTFL 584
>gi|289751901|ref|ZP_06511279.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase rhlE [Mycobacterium
tuberculosis T92]
gi|289692488|gb|EFD59917.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase rhlE [Mycobacterium
tuberculosis T92]
Length = 328
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K LKAFR G + VLV +D G+D++ ++ K Y+HR G RAG+ G
Sbjct: 208 KALKAFR-TGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGV 266
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 267 AVTLVDWDE 275
>gi|452824121|gb|EME31126.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 573
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 15/90 (16%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K LK FR + +LVC++ + GMD +++ + Y+HRAG RAG G
Sbjct: 353 KVLKDFRQLKY-PILVCTEVLARGMDFPFVSHVIQLELPTDAQHYLHRAGRCGRAGVTGF 411
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123
CF+++ + Y F +++F K L H
Sbjct: 412 CFSIVSPE-----YQFVMRKFSKALNITIH 436
>gi|237745550|ref|ZP_04576030.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
gi|229376901|gb|EEO26992.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
Length = 470
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 19/102 (18%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
L AF+ +G++ VLV +D G+ +E + + Y+HR G RAG +G
Sbjct: 303 ALDAFK-EGNITVLVATDVAARGLHIEELPCVINFDLPFVAEDYVHRIGRTGRAGASGEA 361
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSI 136
+L ++KLL +KL+++ PVHSIP I
Sbjct: 362 ISLCSAKDEKLL-----NEIEKLIKR----KLPVHSIPDPEI 394
>gi|238062179|ref|ZP_04606888.1| RNA helicase [Micromonospora sp. ATCC 39149]
gi|237883990|gb|EEP72818.1| RNA helicase [Micromonospora sp. ATCC 39149]
Length = 707
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 11/78 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
KTL FR +G M VLV +D G+ V+ + + K Y+HRAG ARAG++G
Sbjct: 383 KTLAEFR-EGRMSVLVATDVAARGIHVDGVSLVLHVDPPKEPKDYLHRAGRTARAGESGA 441
Query: 94 CFTL-LPKDEDKLLYMFQ 110
TL LPK L M +
Sbjct: 442 VATLVLPKQRRTTLAMLE 459
>gi|115400041|ref|XP_001215609.1| ATP-dependent rRNA helicase RRP3 [Aspergillus terreus NIH2624]
gi|114191275|gb|EAU32975.1| ATP-dependent rRNA helicase RRP3 [Aspergillus terreus NIH2624]
Length = 360
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 36/128 (28%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPK--------------------------TLK 46
K K YL+ LL G+ I+F +V + + +L
Sbjct: 166 KFKDFYLVYLLNERAGQMGIIFTRTVHETQRLSIMLRNLGFPAIPIHGQLSQSARLASLN 225
Query: 47 AFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
FR + +L+ +D G+D+ Y+ KTYIHR G ARAG++G F+
Sbjct: 226 KFRARSR-NLLIATDVAARGLDIPAVDYVLNYDLPQDSKTYIHRVGRTARAGKSGIAFSF 284
Query: 98 LPKDEDKL 105
+ + E +L
Sbjct: 285 VTQYEVEL 292
>gi|170719840|ref|YP_001747528.1| DEAD/DEAH box helicase [Pseudomonas putida W619]
gi|169757843|gb|ACA71159.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
Length = 439
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L +F+ + +QVLV +D G+D++ + + Y+HR G RAG
Sbjct: 281 ATRQRALDSFKAR-EIQVLVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE + L + + L + + D P H +P +
Sbjct: 340 NKGEAISLVCADEVQQLATIETLIRQTLPRHEEPDFIPDHRVPMTD 385
>gi|441507538|ref|ZP_20989464.1| putative ATP-dependent RNA helicase [Gordonia aichiensis NBRC
108223]
gi|441448614|dbj|GAC47425.1| putative ATP-dependent RNA helicase [Gordonia aichiensis NBRC
108223]
Length = 544
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K LK FR G + VLV +D G+D++ ++ KTY+HR G RAG+ G
Sbjct: 317 KALKKFR-TGEIDVLVATDVAARGIDIDDVTHVINYQCPDDDKTYVHRIGRTGRAGRTGI 375
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 376 AITLVDWDE 384
>gi|52143321|ref|YP_083508.1| DEAD/DEAH box helicase [Bacillus cereus E33L]
gi|196039663|ref|ZP_03106967.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
NVH0597-99]
gi|228958407|ref|ZP_04120130.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|229091118|ref|ZP_04222341.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
Rock3-42]
gi|300118169|ref|ZP_07055917.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus SJ1]
gi|423627196|ref|ZP_17602945.1| hypothetical protein IK5_00048 [Bacillus cereus VD154]
gi|51976790|gb|AAU18340.1| ATP-dependent RNA helicase (D-E-A-D box family) [Bacillus cereus
E33L]
gi|196029366|gb|EDX67969.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
NVH0597-99]
gi|228692249|gb|EEL45985.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
Rock3-42]
gi|228801265|gb|EEM48159.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|298724480|gb|EFI65174.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus SJ1]
gi|401272382|gb|EJR78375.1| hypothetical protein IK5_00048 [Bacillus cereus VD154]
Length = 389
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 11/73 (15%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
T++AFRG G +++L+ +D G+D++ ++ YIHR+G R G+ G
Sbjct: 276 TMRAFRG-GKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTV 334
Query: 95 FTLL-PKDEDKLL 106
+L+ P++E KLL
Sbjct: 335 VSLVTPQEERKLL 347
>gi|375099094|ref|ZP_09745357.1| DNA/RNA helicase, superfamily II [Saccharomonospora cyanea NA-134]
gi|374659826|gb|EHR59704.1| DNA/RNA helicase, superfamily II [Saccharomonospora cyanea NA-134]
Length = 552
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLV +D G+DV+ ++ KTY+HR G RAG+ G
Sbjct: 305 QALRAFR-SGKVDVLVATDVAARGIDVDDVTHVINYQTPEDEKTYVHRIGRTGRAGKTGV 363
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 364 AITLVDWDE 372
>gi|302848249|ref|XP_002955657.1| hypothetical protein VOLCADRAFT_66087 [Volvox carteri f.
nagariensis]
gi|300259066|gb|EFJ43297.1| hypothetical protein VOLCADRAFT_66087 [Volvox carteri f.
nagariensis]
Length = 727
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 13/78 (16%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGH 93
+TL FR KG VL+ +D G+DV + A +TYIHR+G RAG +G
Sbjct: 398 QTLDGFR-KGRFPVLIATDVAARGLDVSGIELVLMVDPPADWETYIHRSGRTGRAGSSGT 456
Query: 94 CFTLLPKDEDKLLYMFQV 111
C TL+ K K+ YM +
Sbjct: 457 CITLVTK---KMEYMVAI 471
>gi|189426565|ref|YP_001953742.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
gi|189422824|gb|ACD97222.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
Length = 436
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 19/98 (19%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL F+ +G +VLV +D G+D+ER ++ + Y+HR G RAG+ G
Sbjct: 290 RTLAEFK-QGAFRVLVATDVAARGLDIERLPHVVNYDLPQVPEDYVHRIGRTGRAGEEGI 348
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSI 131
+L+ ++E LL + KL++Q S P S+
Sbjct: 349 AISLVSQEEQILLAAIE-----KLVKQ----SIPRQSL 377
>gi|212722850|ref|NP_001131651.1| uncharacterized protein LOC100193011 [Zea mays]
gi|194692160|gb|ACF80164.1| unknown [Zea mays]
gi|413934956|gb|AFW69507.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 455
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 20/162 (12%)
Query: 8 QICESKLKPIYLIPLLRNLGGEKFIVFASSVANSPK--TLKAFRGKGHMQVLVCSDAMTS 65
+ CES L +LRNLG K + + ++ + L F+ K +L+C+D +
Sbjct: 274 RTCESTR---LLALMLRNLG-LKAMSISGQMSQDKRLGALNRFKAK-DCNILICTDVASR 328
Query: 66 GMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKK 116
G+D++ + K Y+HR G ARAG++G+ +L+ + E + + + KK
Sbjct: 329 GLDIQGVDMVINYDIPMNSKDYVHRVGRTARAGRSGYAVSLVNQYEAQWFVLIEQLLGKK 388
Query: 117 LLQ-QADHDSCPVHSIPSSSIESLRPIYKSEYVESQANRKRK 157
+ Q + D D + P I + I ++ +S ++KR+
Sbjct: 389 IDQCKVDRDEVLILKGP---ISDAKRIALTKLKDSGGHKKRR 427
>gi|114327981|ref|YP_745138.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
gi|114316155|gb|ABI62215.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
Length = 763
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 28/122 (22%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
TL+ F+ G +Q+LVCSD G+D+ +++ + Y+HR G RAG+ G
Sbjct: 506 TLEKFKA-GSLQLLVCSDVAARGIDIGGLSHVFNFDVPIHAEDYVHRIGRTGRAGREGAA 564
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQANR 154
FTL D+ F V +KL+ IP IE L ++E+ E + NR
Sbjct: 565 FTLASPDDK-----FAVDAIEKLINA---------PIPRIEIEGLE---RAEWSE-EPNR 606
Query: 155 KR 156
R
Sbjct: 607 GR 608
>gi|374612243|ref|ZP_09685023.1| DEAD/DEAH box helicase domain protein [Mycobacterium tusciae JS617]
gi|373547956|gb|EHP74664.1| DEAD/DEAH box helicase domain protein [Mycobacterium tusciae JS617]
Length = 483
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K+LKAFR G + VLV +D G+D++ ++ + Y+HR G RAG+ G
Sbjct: 297 KSLKAFR-TGDVDVLVATDVAARGIDIDDITHVINYQIPEDDQAYVHRIGRTGRAGKTGI 355
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 356 AVTLVDWDE 364
>gi|408500418|ref|YP_006864337.1| putative ATP-dependent RNA helicase [Bifidobacterium asteroides
PRL2011]
gi|408465242|gb|AFU70771.1| putative ATP-dependent RNA helicase [Bifidobacterium asteroides
PRL2011]
Length = 554
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 20/113 (17%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMD---------VERAAYIKTYIHRAGPRARAGQNGH 93
+ L+AF +G ++VLV +D GMD V+ A K+++HR+G ARAG++G
Sbjct: 316 RNLEAF-SRGEVKVLVATDVAARGMDISDVDLVVQVDPPADPKSFLHRSGRTARAGRSGD 374
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS--IESLRPIYK 144
TL+ D Q + +++L+ A D+ PV SS E + P+ K
Sbjct: 375 VVTLVLPD--------QWRDTRRMLRMAHIDAKPVQVTADSSEVTELVGPVAK 419
>gi|377563687|ref|ZP_09793026.1| putative ATP-dependent RNA helicase [Gordonia sputi NBRC 100414]
gi|377529134|dbj|GAB38191.1| putative ATP-dependent RNA helicase [Gordonia sputi NBRC 100414]
Length = 538
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K LK FR G + VLV +D G+D++ ++ KTY+HR G RAG+ G
Sbjct: 317 KALKKFR-TGEIDVLVATDVAARGIDIDDVTHVINYQCPDDDKTYVHRIGRTGRAGRTGI 375
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 376 AITLVDWDE 384
>gi|296169013|ref|ZP_06850678.1| ATP-dependent RNA helicase DeaD, partial [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295896310|gb|EFG75967.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length = 443
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K LKAFR G + VLV +D G+D++ ++ + Y+HR G RAG+ G
Sbjct: 303 KALKAFR-NGDIDVLVATDVAARGIDIDDITHVINYQIPEDEQAYVHRIGRTGRAGKTGI 361
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 362 AVTLVDWDE 370
>gi|403382424|ref|ZP_10924481.1| ATP-dependent RNA helicase [Paenibacillus sp. JC66]
Length = 442
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 11/79 (13%)
Query: 37 SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRAR 87
S A + +K FR + +QVLV +D G+DVE ++ ++YIHR G R
Sbjct: 257 SQAKREQVMKRFR-EAKLQVLVATDVAARGLDVEGVTHVFNYDMPLDTESYIHRVGRTGR 315
Query: 88 AGQNGHCFTLL-PKDEDKL 105
AG +G TL+ P+D +L
Sbjct: 316 AGGDGLAVTLVTPRDNAQL 334
>gi|327400905|ref|YP_004341744.1| DEAD/DEAH box helicase domain-containing protein [Archaeoglobus
veneficus SNP6]
gi|327316413|gb|AEA47029.1| DEAD/DEAH box helicase domain protein [Archaeoglobus veneficus
SNP6]
Length = 389
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 26/114 (22%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ ++ FR KG ++VLV +D + G+DV+ ++ + YIHR G ARAG+NG
Sbjct: 279 RMMERFR-KGEIRVLVATDVASRGLDVKGVTHVFNYDVPSKAEDYIHRIGRTARAGKNGK 337
Query: 94 CFTLLPKDEDK------LLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRP 141
T+L + + + Y ++R ++ Q+ +P + + RP
Sbjct: 338 AVTILGRKDHGSFRRIMVKYGLTIERLEETFQE----------VPFKYVTTYRP 381
>gi|157737720|ref|YP_001490403.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri RM4018]
gi|157699574|gb|ABV67734.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri RM4018]
Length = 435
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 22/124 (17%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G ++VLV +D G+D+E+ ++ + Y+HR G RAG NG
Sbjct: 285 KALDDFKN-GKVRVLVATDIAARGIDIEQLPHVVNFELPNVAEDYVHRIGRTGRAGNNGI 343
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQAN 153
+L+ DE + L+ + K K+ +++ + + V+ P K+E + +++N
Sbjct: 344 AISLVCVDEHEYLFGIE-KLIKQKIKKVEINGFKVN-----------PNIKAEPIGNRSN 391
Query: 154 RKRK 157
R K
Sbjct: 392 RGNK 395
>gi|307200753|gb|EFN80820.1| Probable ATP-dependent RNA helicase DDX47 [Harpegnathos saltator]
Length = 334
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K +YL+ +L L G F++F ++ N+ +T R G H Q
Sbjct: 124 KFKDVYLVHILNELAGNSFMIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALT 183
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+L+ +D + +D+ + K YIHR G ARAG++G T +
Sbjct: 184 KFKARNRSILISTDVASRSLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFV 243
Query: 99 PK 100
+
Sbjct: 244 TQ 245
>gi|268680158|ref|YP_003304589.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
gi|268618189|gb|ACZ12554.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
DSM 6946]
Length = 436
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 12/89 (13%)
Query: 25 NLGGEKFIVFASSVANSPKT--LKAFRGKGHMQVLVCSDAMTSGMDVERAAYI------- 75
N G K +V A+S +T + AF+ + ++VLV +D + G+D+E Y+
Sbjct: 266 NASGLKTLVLHGDKAHSKRTQAIHAFK-ENAIRVLVATDIASRGLDIEDLPYVINYELPG 324
Query: 76 --KTYIHRAGPRARAGQNGHCFTLLPKDE 102
+ Y HRAG RAG+ G +L+ ++E
Sbjct: 325 DAEDYTHRAGRTGRAGKEGRAISLVAQEE 353
>gi|383650895|ref|ZP_09961301.1| helicase [Streptomyces chartreusis NRRL 12338]
Length = 898
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG G
Sbjct: 263 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGT 321
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 322 AITLVDWDD 330
>gi|223947385|gb|ACN27776.1| unknown [Zea mays]
gi|413934955|gb|AFW69506.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 430
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 20/160 (12%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPK--TLKAFRGKGHMQVLVCSDAMTSGM 67
CES L +LRNLG K + + ++ + L F+ K +L+C+D + G+
Sbjct: 251 CESTR---LLALMLRNLG-LKAMSISGQMSQDKRLGALNRFKAK-DCNILICTDVASRGL 305
Query: 68 DVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLL 118
D++ + K Y+HR G ARAG++G+ +L+ + E + + + KK+
Sbjct: 306 DIQGVDMVINYDIPMNSKDYVHRVGRTARAGRSGYAVSLVNQYEAQWFVLIEQLLGKKID 365
Query: 119 Q-QADHDSCPVHSIPSSSIESLRPIYKSEYVESQANRKRK 157
Q + D D + P I + I ++ +S ++KR+
Sbjct: 366 QCKVDRDEVLILKGP---ISDAKRIALTKLKDSGGHKKRR 402
>gi|195021969|ref|XP_001985492.1| GH14471 [Drosophila grimshawi]
gi|193898974|gb|EDV97840.1| GH14471 [Drosophila grimshawi]
Length = 603
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 36/147 (24%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAYIK---------TYIHRAGPRARAGQNGHCF 95
++AFR +GH+ VL+C++ M G+D + + +YIHR G RAG+ G
Sbjct: 412 VRAFR-EGHIWVLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAI 470
Query: 96 TLLPKDEDKLL----------------YMFQVK---------RFKKLLQQADHDSCPVHS 130
T +D+ L YM Q+K R KK L++ D +
Sbjct: 471 TFFTQDDTANLRSVAQIIRNSGGKVPEYMLQMKKVRKSEAKVRAKKPLEREDISTKIRPE 530
Query: 131 IPSSSIESLRPIYKSEYVESQANRKRK 157
IP + ++ L+ + K+E V Q + +K
Sbjct: 531 IPKNFVQ-LQKVEKTEKVLKQQAKAKK 556
>gi|78486348|ref|YP_392273.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
gi|78364634|gb|ABB42599.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
Length = 574
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 51 KGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKD 101
KG + +L+ +D + G+DVER +++ ++Y+HR G RAG++G +
Sbjct: 292 KGKLDILIATDVVARGLDVERISHVINYDIPYDNESYVHRIGRTGRAGRSGTAILFVAPR 351
Query: 102 EDKLLYMFQVKRFKKLLQ 119
E +LL + KK+ Q
Sbjct: 352 ERRLLRSIEASTKKKITQ 369
>gi|395495355|ref|ZP_10426934.1| ATP-dependent RNA helicase [Pseudomonas sp. PAMC 25886]
Length = 627
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 20/110 (18%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G +++LV +D G+D+++ ++ + Y+HR G RAG++G
Sbjct: 290 KALADFKA-GEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGE 348
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQ--ADHDSCPVHSIPSSSIESLRP 141
+L+ DE+KLL K +++ +Q AD D + SS++E+ +P
Sbjct: 349 AISLVAPDEEKLL-----KSIERMTKQKIADGD---LMGFDSSAVEAEKP 390
>gi|365854792|ref|ZP_09394859.1| putative ATP-dependent RNA helicase RhlE [Acetobacteraceae
bacterium AT-5844]
gi|363719803|gb|EHM03100.1| putative ATP-dependent RNA helicase RhlE [Acetobacteraceae
bacterium AT-5844]
Length = 508
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 10/72 (13%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
TL+ F+ +Q+LVCSD G+D+ +++ + Y+HR G RAG+ GH
Sbjct: 269 TLEKFKNN-EVQLLVCSDVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGREGHA 327
Query: 95 FTLLPKDEDKLL 106
+++ D+ KLL
Sbjct: 328 YSIATADDAKLL 339
>gi|227550039|ref|ZP_03980088.1| helicase [Corynebacterium lipophiloflavum DSM 44291]
gi|227077885|gb|EEI15848.1| helicase [Corynebacterium lipophiloflavum DSM 44291]
Length = 430
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + +LV +D G+DV+ ++ TY+HR G RAGQ G
Sbjct: 300 QALEAFR-SGEVSILVATDVAARGIDVDDVTHVINFQTPDDPMTYVHRIGRTGRAGQTGI 358
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 359 AVTLVGFDE 367
>gi|195621064|gb|ACG32362.1| ATP-dependent RNA helicase DDX47 [Zea mays]
Length = 455
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 20/160 (12%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPK--TLKAFRGKGHMQVLVCSDAMTSGM 67
CES L +LRNLG K + + ++ + L F+ K +L+C+D + G+
Sbjct: 276 CESTR---LLALMLRNLG-LKAMSISGQMSQDKRLGALNRFKAK-DCNILICTDVASRGL 330
Query: 68 DVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLL 118
D++ + K Y+HR G ARAG++G+ +L+ + E + + + KK+
Sbjct: 331 DIQGVDMVINYDIPINSKDYVHRVGRTARAGRSGYAVSLVNQYEAQWFVLIEQLLGKKID 390
Query: 119 Q-QADHDSCPVHSIPSSSIESLRPIYKSEYVESQANRKRK 157
Q + D D + P I + I ++ +S ++KR+
Sbjct: 391 QCKVDRDEVLILKGP---ISDAKRIALTKLKDSGGHKKRR 427
>gi|71907449|ref|YP_285036.1| helicase, C-terminal:Type III restriction enzyme, res
subunit:DEAD/DEAH box helicase, N-terminal, partial
[Dechloromonas aromatica RCB]
gi|71847070|gb|AAZ46566.1| Helicase, C-terminal:Type III restriction enzyme, res
subunit:DEAD/DEAH box helicase, N-terminal
[Dechloromonas aromatica RCB]
Length = 447
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L++F+ G +Q+LV +D G+D++ + + YIHR G RAG G
Sbjct: 285 RALESFKA-GEVQILVATDVAARGLDIDDLPQVVNYDLPIVAEDYIHRIGRTGRAGATGQ 343
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIP 132
+L+ DE LL + + L ++ + P H +P
Sbjct: 344 AISLVCADEAPLLAAIETLIKQTLSREEEPGFEPDHRVP 382
>gi|413934953|gb|AFW69504.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 434
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 20/162 (12%)
Query: 8 QICESKLKPIYLIPLLRNLGGEKFIVFASSVANSPK--TLKAFRGKGHMQVLVCSDAMTS 65
+ CES L +LRNLG K + + ++ + L F+ K +L+C+D +
Sbjct: 253 RTCESTR---LLALMLRNLG-LKAMSISGQMSQDKRLGALNRFKAK-DCNILICTDVASR 307
Query: 66 GMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKK 116
G+D++ + K Y+HR G ARAG++G+ +L+ + E + + + KK
Sbjct: 308 GLDIQGVDMVINYDIPMNSKDYVHRVGRTARAGRSGYAVSLVNQYEAQWFVLIEQLLGKK 367
Query: 117 LLQ-QADHDSCPVHSIPSSSIESLRPIYKSEYVESQANRKRK 157
+ Q + D D + P I + I ++ +S ++KR+
Sbjct: 368 IDQCKVDRDEVLILKGP---ISDAKRIALTKLKDSGGHKKRR 406
>gi|395796052|ref|ZP_10475351.1| ATP-dependent RNA helicase [Pseudomonas sp. Ag1]
gi|421142552|ref|ZP_15602526.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens
BBc6R8]
gi|395339690|gb|EJF71532.1| ATP-dependent RNA helicase [Pseudomonas sp. Ag1]
gi|404506225|gb|EKA20221.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens
BBc6R8]
Length = 627
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 20/110 (18%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G +++LV +D G+D+++ ++ + Y+HR G RAG++G
Sbjct: 290 KALADFKA-GEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGE 348
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQ--ADHDSCPVHSIPSSSIESLRP 141
+L+ DE+KLL K +++ +Q AD D + SS++E+ +P
Sbjct: 349 AISLVAPDEEKLL-----KSIERMTKQKIADGD---LMGFDSSAVEAEKP 390
>gi|390167359|ref|ZP_10219350.1| putative helicase [Sphingobium indicum B90A]
gi|389590061|gb|EIM68066.1| putative helicase [Sphingobium indicum B90A]
Length = 461
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 19/118 (16%)
Query: 37 SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRAR 87
S A L+AFR GH+++LV +D G+DV +++ + Y+HR G AR
Sbjct: 279 SQAQRTTALQAFR-HGHVKLLVATDIAARGIDVSGVSHVINFELPNVPEQYVHRIGRTAR 337
Query: 88 AGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS 145
AG G + + DE Y+ ++R K+ D P +P + +E++R + K+
Sbjct: 338 AGAEGVAISFVADDERP--YLKAIERTTKV----KLDVVP---LPENFVEAVRNLPKA 386
>gi|119897299|ref|YP_932512.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
gi|119669712|emb|CAL93625.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
Length = 494
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL+AF+ G ++VLV +D G+D++ Y+ + Y+HR G RAG G+
Sbjct: 288 ETLEAFKA-GKLRVLVATDVAARGIDIDELPYVINYELPHTAEDYVHRIGRTGRAGHQGN 346
Query: 94 CFTLLPKDEDKLLYMFQ 110
+L+ +E LL Q
Sbjct: 347 AVSLVCTEEKHLLADIQ 363
>gi|411004563|ref|ZP_11380892.1| ATP-dependent RNA helicase [Streptomyces globisporus C-1027]
Length = 757
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG G
Sbjct: 275 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVVNYQSPEDEKTYLHRIGRTGRAGAKGI 333
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 334 AITLVDWDD 342
>gi|357031470|ref|ZP_09093413.1| ATP-dependent RNA helicase [Gluconobacter morbifer G707]
gi|356414700|gb|EHH68344.1| ATP-dependent RNA helicase [Gluconobacter morbifer G707]
Length = 398
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L+ FR GH+ +LV +D + G+D+ + + Y+HR G ARAG+ G
Sbjct: 306 KALEQFR-NGHVPILVTTDIASRGLDIPDVELVINMDMPETPEAYVHRIGRTARAGKKGA 364
Query: 94 CFTLLPKDE 102
F+L+ DE
Sbjct: 365 AFSLINADE 373
>gi|344923278|ref|ZP_08776739.1| superfamily II DNA/RNA helicase [Candidatus Odyssella
thessalonicensis L13]
Length = 413
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 15/87 (17%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL+ FR KG+ ++LV +D G+DV + + Y+HR G RAG+NG
Sbjct: 284 ETLENFR-KGNYRILVTTDVAARGIDVSGITLVINFDVPVHEEDYVHRIGRTGRAGKNGV 342
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQ 120
+ K E K ++KR + L++Q
Sbjct: 343 AIMFVTKGETK-----KLKRIESLIKQ 364
>gi|126740399|ref|ZP_01756087.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. SK209-2-6]
gi|126718535|gb|EBA15249.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. SK209-2-6]
Length = 506
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 11/73 (15%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
KTL FR G +++LV SD G+DV +++ + Y+HR G RAG++G
Sbjct: 327 KTLDGFR-DGSLRILVASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGK 385
Query: 94 CFTL-LPKDEDKL 105
T+ P+DE L
Sbjct: 386 AITICAPRDEKAL 398
>gi|189425674|ref|YP_001952851.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
gi|189421933|gb|ACD96331.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
Length = 439
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 11/71 (15%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCF 95
+ FR G Q+LV +D G+DV + +++ + YIHR G RA +NG F
Sbjct: 282 MDGFR-NGTYQILVATDIAARGIDVSQVSHVINYDIPDTSEAYIHRIGRTGRAARNGDAF 340
Query: 96 TLLPKDEDKLL 106
T++ DED L+
Sbjct: 341 TMV-TDEDTLM 350
>gi|422908500|ref|ZP_16943194.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-09]
gi|424658894|ref|ZP_18096145.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-16]
gi|341640551|gb|EGS65134.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-09]
gi|408053656|gb|EKG88660.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-16]
Length = 406
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 17/130 (13%)
Query: 37 SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRAR 87
S A L F+ G QVL+ +D + G+ +E+ + +TY+HR G AR
Sbjct: 271 SQAQREAALAEFK-NGTTQVLIATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTAR 329
Query: 88 AGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEY 147
AGQ G F+L+ E L + + ++L Q + + PV PS+ P K
Sbjct: 330 AGQQGIAFSLVCHGEMDALNAIRTQTQRELPVQ-NLEGFPVTDQPSTGESKRAPRDK--- 385
Query: 148 VESQANRKRK 157
QANR+ +
Sbjct: 386 ---QANRRTQ 392
>gi|226365826|ref|YP_002783609.1| ATP-dependent RNA helicase [Rhodococcus opacus B4]
gi|226244316|dbj|BAH54664.1| putative ATP-dependent RNA helicase [Rhodococcus opacus B4]
Length = 534
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K LKAFR G + VLV +D G+D++ ++ KTY+HR G RAG+ G
Sbjct: 332 KALKAFR-SGKIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGI 390
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 391 AVTLVDWDD 399
>gi|148237396|ref|NP_001085167.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Xenopus laevis]
gi|47938654|gb|AAH72214.1| MGC81303 protein [Xenopus laevis]
Length = 448
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ + R G H Q
Sbjct: 242 SKFKDSYLVYILNELAGNSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMGQNKRLGAL 301
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 302 NKFKAKSRSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITF 361
Query: 98 LPK 100
+ +
Sbjct: 362 VSQ 364
>gi|418047503|ref|ZP_12685591.1| DEAD/DEAH box helicase domain protein [Mycobacterium rhodesiae
JS60]
gi|353193173|gb|EHB58677.1| DEAD/DEAH box helicase domain protein [Mycobacterium rhodesiae
JS60]
Length = 503
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K LKAFR G + VLV +D G+D++ ++ + Y+HR G RAG+ G
Sbjct: 302 KALKAFR-TGDVDVLVATDVAARGIDIDDITHVINYQIPEDEQAYVHRIGRTGRAGKTGI 360
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 361 AITLVDWDE 369
>gi|408680530|ref|YP_006880357.1| putative ATP-dependent RNA helicase [Streptomyces venezuelae ATCC
10712]
gi|328884859|emb|CCA58098.1| putative ATP-dependent RNA helicase [Streptomyces venezuelae ATCC
10712]
Length = 874
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KT++HR G RAG G
Sbjct: 267 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTFLHRVGRTGRAGNKGT 325
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 326 AVTLVDWDD 334
>gi|339257348|ref|XP_003370044.1| putative DEAD/DEAH box helicase [Trichinella spiralis]
gi|316965399|gb|EFV50121.1| putative DEAD/DEAH box helicase [Trichinella spiralis]
Length = 1007
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 26/143 (18%)
Query: 8 QICESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGK------------GHMQ 55
QI E ++P +I + + G + + +P L +G+ G
Sbjct: 843 QILEKGIEPPIIIFVNQKKGADLLARGLEKLGFNPCALHGGKGQDARDYALASLKDGSKD 902
Query: 56 VLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLL 106
+LV +D G+D+ + A I+ Y HR G RAG++G T L K+++++
Sbjct: 903 ILVATDVAGRGIDIKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKSGKAITFLTKEDNQVF 962
Query: 107 YMFQVKRFKKLLQQADHDSCPVH 129
Y K+LL ++ SCP
Sbjct: 963 Y-----DLKQLLLESPVSSCPAE 980
>gi|317507502|ref|ZP_07965226.1| DEAD/DEAH box helicase, partial [Segniliparus rugosus ATCC BAA-974]
gi|316254189|gb|EFV13535.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
Length = 403
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L FR KG +++LVC+D G+D++ ++ K Y+HR G RAG+ G+
Sbjct: 283 EALSGFR-KGKIEILVCTDVAARGIDIDGITHVINYTCPEDEKVYVHRIGRTGRAGRTGN 341
Query: 94 CFTLLPKDE 102
TL+ ++
Sbjct: 342 AITLVDWED 350
>gi|227505531|ref|ZP_03935580.1| ATP-dependent RNA helicase [Corynebacterium striatum ATCC 6940]
gi|227197895|gb|EEI77943.1| ATP-dependent RNA helicase [Corynebacterium striatum ATCC 6940]
Length = 442
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A K+L AFR +G +++LV +D G+DV+ ++ T++HR G RAG
Sbjct: 296 AAREKSLNAFR-EGKVEILVATDVAARGIDVDDVTHVINYQVPDDPMTFVHRIGRTGRAG 354
Query: 90 QNGHCFTLLPKDE 102
G TL+ DE
Sbjct: 355 HTGTAVTLVGYDE 367
>gi|377574212|ref|ZP_09803243.1| putative DEAD-box RNA helicase [Mobilicoccus pelagius NBRC 104925]
gi|377537015|dbj|GAB48408.1| putative DEAD-box RNA helicase [Mobilicoccus pelagius NBRC 104925]
Length = 544
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + +LV +D G+DVE ++ KTY+HR G RAG G
Sbjct: 337 QALRAFR-NGKVDILVATDVAARGIDVENVTHVINYQCPEDEKTYLHRTGRTGRAGHKGV 395
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 396 AITLVDWDD 404
>gi|417104064|ref|ZP_11961294.1| ATP-dependent RNA helicase protein [Rhizobium etli CNPAF512]
gi|327191069|gb|EGE58122.1| ATP-dependent RNA helicase protein [Rhizobium etli CNPAF512]
Length = 499
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCF 95
L+ FR G++Q+LV SD G+D+ +++ + Y+HR G RAG++G F
Sbjct: 289 LQNFR-DGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAF 347
Query: 96 TLLPKDEDKLL 106
TL+ K + K +
Sbjct: 348 TLVTKRDTKFV 358
>gi|294012034|ref|YP_003545494.1| putative helicase [Sphingobium japonicum UT26S]
gi|292675364|dbj|BAI96882.1| putative helicase [Sphingobium japonicum UT26S]
Length = 461
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 19/118 (16%)
Query: 37 SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRAR 87
S A L+AFR GH+++LV +D G+DV +++ + Y+HR G AR
Sbjct: 279 SQAQRTTALQAFR-HGHVKLLVATDIAARGIDVSGVSHVINFELPNVPEQYVHRIGRTAR 337
Query: 88 AGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS 145
AG G + + DE Y+ ++R K+ D P +P + +E++R + K+
Sbjct: 338 AGAEGVAISFVADDERP--YLKAIERTTKV----KLDVVP---LPENFVEAVRNLPKA 386
>gi|323138624|ref|ZP_08073691.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
49242]
gi|322396112|gb|EFX98646.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
49242]
Length = 496
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 10/76 (13%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
+L AF+ G + +LVCSD G+D+ +++ + Y+HR G RAG++G
Sbjct: 286 SLDAFK-NGDVAILVCSDVAARGLDIPDVSHVFNFDVPTHSEDYVHRIGRTGRAGRSGVA 344
Query: 95 FTLLPKDEDKLLYMFQ 110
T++ +D+ K + Q
Sbjct: 345 MTIVTEDDTKYIDQIQ 360
>gi|294053581|ref|YP_003547239.1| DEAD/DEAH box helicase [Coraliomargarita akajimensis DSM 45221]
gi|293612914|gb|ADE53069.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
DSM 45221]
Length = 373
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 11/81 (13%)
Query: 40 NSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQ 90
+ K ++ F+ K QVLV +D G+D+E A++ + Y HRAG ARAG+
Sbjct: 284 DRDKVMRIFKRK-ESQVLVATDVAARGIDIEALAFVIQHQLPDAGQYYTHRAGRTARAGK 342
Query: 91 NGHCFTLL-PKDEDKLLYMFQ 110
G TL+ PK+ K+ + Q
Sbjct: 343 RGVSLTLIEPKERSKITKLEQ 363
>gi|395650585|ref|ZP_10438435.1| ATP-dependent RNA helicase [Pseudomonas extremaustralis 14-3
substr. 14-3b]
Length = 635
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 20/110 (18%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G +++LV +D G+D+++ ++ + Y+HR G RAG++G
Sbjct: 290 KALADFKA-GEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGE 348
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQ--ADHDSCPVHSIPSSSIESLRP 141
+L+ DE+KLL K +++ +Q AD D + SS++E+ +P
Sbjct: 349 AISLVAPDEEKLL-----KSIERMTKQKIADGD---LMGFDSSAVEAEKP 390
>gi|391344138|ref|XP_003746360.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Metaseiulus occidentalis]
Length = 461
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
+K K ++L+ LL++L G+ FIVF ++ + K R G H Q
Sbjct: 254 AKYKEVHLVHLLQDLAGQSFIVFCATCNGTQKLALMLRNLGFTAIPLHGQMSQAKRLGAL 313
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D G+D+ + K YIHR G ARAG++G T
Sbjct: 314 QKFKAQARNILLATDVAARGLDIPHVDVVINYDIPTHSKDYIHRVGRTARAGRSGKAVTF 373
Query: 98 LPK 100
+ +
Sbjct: 374 VSQ 376
>gi|170032268|ref|XP_001844004.1| ATP-dependent RNA helicase DDX51 [Culex quinquefasciatus]
gi|167872120|gb|EDS35503.1| ATP-dependent RNA helicase DDX51 [Culex quinquefasciatus]
Length = 695
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 85/206 (41%), Gaps = 57/206 (27%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANS-------------------------PK 43
+ + K+KP+ L L++ G ++F+ F +S+ S P+
Sbjct: 428 MTQFKIKPLTLFALIKENGYKRFLCFTNSIDGSHRLSFVLQKMFGTELVIEEWSSSLSPQ 487
Query: 44 TLKAFRGK---GHMQVLVCSDAMTSGM-----------DVERAAYIKTYIHRAGPRARAG 89
K+ + G + ++C+DA+ G+ D+ R +I TYIHR G RAG
Sbjct: 488 ARKSVLSRFALGKVNGIICTDALARGIDIDDIDVVISYDMPR--HINTYIHRIGRTGRAG 545
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEY-- 147
G T+L DE++ K+F+ L +A I S++ E +Y +
Sbjct: 546 NRGTSITMLI-DEER-------KKFQSTLAEAGKQPLESIEIRSNAEEEYAVLYSTALND 597
Query: 148 ------VESQANRKRKIGFKLSRMVK 167
+E Q +K + G ++ M K
Sbjct: 598 LREALDLEKQTIQKIRSGMSIANMTK 623
>gi|145298914|ref|YP_001141755.1| ATP-dependent RNA helicase RhlE [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418361067|ref|ZP_12961724.1| ATP-dependent RNA helicase RhlE [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142851686|gb|ABO90007.1| ATP-dependent RNA helicase RhlE [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356687652|gb|EHI52232.1| ATP-dependent RNA helicase RhlE [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 467
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 15/87 (17%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L F+ G+++VLV +D G+D+++ + + Y+HR G RAG GH
Sbjct: 285 RALAGFK-DGNVKVLVATDIAARGLDIDKLPQVVNFELPNVAEDYVHRIGRTGRAGAAGH 343
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQ 120
+L+ DE KL +K ++L +Q
Sbjct: 344 AISLVAADEGKL-----IKAIERLTKQ 365
>gi|443673677|ref|ZP_21138733.1| putative DEAD/DEAH box helicase [Rhodococcus sp. AW25M09]
gi|443413744|emb|CCQ17071.1| putative DEAD/DEAH box helicase [Rhodococcus sp. AW25M09]
Length = 507
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K LKAFR G + VLV +D G+D++ ++ KTY+HR G RAG+ G
Sbjct: 287 KALKAFR-TGKIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGI 345
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 346 AVTLVDWDD 354
>gi|381395882|ref|ZP_09921576.1| ATP-dependent RNA helicase DeaD [Glaciecola punicea DSM 14233 =
ACAM 611]
gi|379328447|dbj|GAB56709.1| ATP-dependent RNA helicase DeaD [Glaciecola punicea DSM 14233 =
ACAM 611]
Length = 584
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 40/134 (29%)
Query: 51 KGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKD 101
+G + +LV +D G+DVER +++ ++Y+HR G RAG+ G +
Sbjct: 294 QGKIDILVATDVAARGLDVERVSHVINYDVPHDTESYVHRVGRTGRAGRKGDAILFISHR 353
Query: 102 EDKLLYMFQ----------------------VKRFKKLLQQADHDSCPVHSIPSSSIESL 139
E ++L+ + + RFKK + + ++ SIES
Sbjct: 354 EKRMLFAIERATKQEITMMEIPSIGELNESRLGRFKKSV---------IDALAHESIESY 404
Query: 140 RPIYKSEYVESQAN 153
P+ ++ ES+A+
Sbjct: 405 MPVIEAIIRESEAS 418
>gi|340368286|ref|XP_003382683.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Amphimedon
queenslandica]
Length = 640
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 44/147 (29%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKT------------------------- 44
C S KP+ L+ L+ + + F S ++ +
Sbjct: 465 CSSDYKPLVLLHLILTFDHHRILCFTHSRESTHRLTLLLKEYDAPVAEISGDLSQEKKNE 524
Query: 45 -LKAFRGKGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGHC 94
+K GK ++ LVCSD M GMD+ + ++ ++Y+HR G ARAG G
Sbjct: 525 LIKKLTGK-EIKALVCSDGMARGMDIPGIDCVINYDVPSHFRSYLHRVGRTARAGAEGAA 583
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLLQQA 121
+TL +E V ++++++++A
Sbjct: 584 YTLNTFEE--------VHKWQRMIREA 602
>gi|75908173|ref|YP_322469.1| DEAD/DEAH box helicase [Anabaena variabilis ATCC 29413]
gi|75701898|gb|ABA21574.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC
29413]
Length = 426
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 22 LLRNLGGEKFIVFA--SSVANSPKT--LKAFRGKGHMQVLVCSDAMTSGMDVERAAYI-- 75
L++ LG E+ A + + S +T L F+ G +QVLV +D G+D+ Y+
Sbjct: 263 LVKQLGHERIQALAIHGNKSQSARTHALAKFK-NGSLQVLVATDIAARGLDISELPYVVN 321
Query: 76 -------KTYIHRAGPRARAGQNGHCFTLLPKDEDKLL 106
+ Y+HR G RAG +G +L+ DE LL
Sbjct: 322 FDLPYVPEDYVHRIGRTGRAGASGEAVSLVSADEYHLL 359
>gi|334344694|ref|YP_004553246.1| DEAD/DEAH box helicase [Sphingobium chlorophenolicum L-1]
gi|334101316|gb|AEG48740.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
L-1]
Length = 460
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 19/118 (16%)
Query: 37 SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRAR 87
S A L+AFR GH+++LV +D G+DV +++ + Y+HR G AR
Sbjct: 279 SQAQRTTALQAFR-HGHVKLLVATDIAARGIDVSGVSHVINFELPNVPEQYVHRIGRTAR 337
Query: 88 AGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS 145
AG G + + DE Y+ ++R K+ V +P + +E++R + K+
Sbjct: 338 AGAEGIAISFVADDERP--YLKAIERTTKV-------KLDVVPLPENFVEAVRNLPKA 386
>gi|254476293|ref|ZP_05089679.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
gi|214030536|gb|EEB71371.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
Length = 501
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
KTL FR +G+++ LV SD G+DV +++ + Y+HR G RAG++G
Sbjct: 293 KTLDEFR-EGNLRFLVASDVAARGLDVPTVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGT 351
Query: 94 CFTL-LPKDEDKLLYMFQVKRFKKLLQQ 120
+ +PKDE L + ++L+QQ
Sbjct: 352 AMMICVPKDEKNL------EDIERLVQQ 373
>gi|154282339|ref|XP_001541965.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410145|gb|EDN05533.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 826
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
+ S KTL AFR G + +++ +D + G+D+ ++ +YIHR G ARAG
Sbjct: 696 STSRKTLSAFR-NGKLSIVIATDRASRGLDLPSLTHVVSYDIPTSLTSYIHRVGRTARAG 754
Query: 90 QNGHCFTLLPKDEDKLLYMFQVK 112
++G +TL+ E + VK
Sbjct: 755 RSGSAWTLVAHSEGRWFANEVVK 777
>gi|407927370|gb|EKG20264.1| RNA helicase ATP-dependent DEAD-box conserved site [Macrophomina
phaseolina MS6]
Length = 363
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 34/142 (23%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K +YLI LL ++ G I+F +V + + R G H Q
Sbjct: 164 KHKDLYLIHLLNDMIGHPTIIFTRTVNETQRIAILLRALGFGAIPLHGQLSQSARLGALG 223
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+LV +D G+D+ +Y+ KTY+HR G ARAG++G +++
Sbjct: 224 KFKAKTRDILVATDVAARGLDIPSVSYVINYDLPPDSKTYVHRVGRTARAGKSGKAVSIV 283
Query: 99 PKDEDKLLYMFQVKRFKKLLQQ 120
+ + ++ + KK+ ++
Sbjct: 284 TQYDVEIWLRIETALGKKVDEE 305
>gi|153839129|ref|ZP_01991796.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
AQ3810]
gi|260902834|ref|ZP_05911229.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
AQ4037]
gi|149747384|gb|EDM58352.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
AQ3810]
gi|308107831|gb|EFO45371.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
AQ4037]
Length = 430
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 17/106 (16%)
Query: 26 LGGEKFIVFASSVANSPK--TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI-------- 75
L G K +V A S + L+ F+ G ++V+V +D G+D+E ++
Sbjct: 266 LDGIKAVVCHGDRAQSARRRALEEFK-TGKVRVMVATDVAARGLDIEDLPHVVNYDMPFL 324
Query: 76 -KTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQ 120
+ Y+HR G RAG+ GH + + +DE+ L + QV + L+QQ
Sbjct: 325 AEDYVHRIGRTGRAGKQGHAVSFVNRDEE--LTVVQV---ENLIQQ 365
>gi|381164531|ref|ZP_09873761.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea NA-128]
gi|379256436|gb|EHY90362.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea NA-128]
Length = 538
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLV +D G+DV+ ++ KTY+HR G RAG+ G
Sbjct: 288 QALRAFR-SGKVDVLVATDVAARGIDVDDVTHVINYQTPEDEKTYVHRIGRTGRAGKTGV 346
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 347 AITLVDWDE 355
>gi|28900445|ref|NP_800100.1| ATP-dependent RNA helicase [Vibrio parahaemolyticus RIMD 2210633]
gi|260362335|ref|ZP_05775298.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
K5030]
gi|260877397|ref|ZP_05889752.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
AN-5034]
gi|260898434|ref|ZP_05906930.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
Peru-466]
gi|417322244|ref|ZP_12108778.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus 10329]
gi|433659709|ref|YP_007300568.1| ATP-dependent RNA helicase [Vibrio parahaemolyticus BB22OP]
gi|28808756|dbj|BAC61933.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus RIMD
2210633]
gi|308085113|gb|EFO34808.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
Peru-466]
gi|308090744|gb|EFO40439.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
AN-5034]
gi|308111119|gb|EFO48659.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
K5030]
gi|328470398|gb|EGF41309.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus 10329]
gi|432511096|gb|AGB11913.1| ATP-dependent RNA helicase [Vibrio parahaemolyticus BB22OP]
Length = 430
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 17/106 (16%)
Query: 26 LGGEKFIVFASSVANSPK--TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI-------- 75
L G K +V A S + L+ F+ G ++V+V +D G+D+E ++
Sbjct: 266 LDGIKAVVCHGDRAQSARRRALEEFK-TGKVRVMVATDVAARGLDIEDLPHVVNYDMPFL 324
Query: 76 -KTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQ 120
+ Y+HR G RAG+ GH + + +DE+ L + QV + L+QQ
Sbjct: 325 AEDYVHRIGRTGRAGKQGHAVSFVNRDEE--LTVVQV---ENLIQQ 365
>gi|432871164|ref|XP_004071864.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Oryzias latipes]
Length = 488
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 34/140 (24%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
+K K YL+ +L L G F++F S+ N+ + R G H Q
Sbjct: 262 AKYKDCYLVSILNELAGNSFMIFCSTCNNAQRVALMLRNLGITAIPLHGQMSQNKRLGAL 321
Query: 56 ---------VLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGHCFTL 97
VL+ +D + G+D+ + + K YIHR G ARAG++G T
Sbjct: 322 NKFKSKSRSVLLATDVASRGLDIPHVDCVINYDIPTHSKDYIHRVGRTARAGRSGKSITF 381
Query: 98 LPKDEDKLLYMFQVKRFKKL 117
+ + + +L + KKL
Sbjct: 382 VTQYDVELFQRIESLIGKKL 401
>gi|333894503|ref|YP_004468378.1| ATP-dependent RNA helicase [Alteromonas sp. SN2]
gi|332994521|gb|AEF04576.1| ATP-dependent RNA helicase [Alteromonas sp. SN2]
Length = 588
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 20/109 (18%)
Query: 51 KGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKD 101
+G++ +LV +D + G+DVER +++ ++Y+HR G RAG+ G +
Sbjct: 294 QGNIDILVATDVVARGLDVERVSHVINYDVPYDSESYVHRIGRTGRAGRTGDAILFISHR 353
Query: 102 EDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVES 150
E ++L+ + K +Q P+ +P SI + S + +S
Sbjct: 354 EKRMLFSIE-----KTTKQ------PIEVMPIPSISEINETRLSRFKQS 391
>gi|424851819|ref|ZP_18276216.1| LOW QUALITY PROTEIN: DEAD/DEAH box helicase domain-containing
protein, partial [Rhodococcus opacus PD630]
gi|356666484|gb|EHI46555.1| LOW QUALITY PROTEIN: DEAD/DEAH box helicase domain-containing
protein, partial [Rhodococcus opacus PD630]
Length = 526
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K LKAFR G + VLV +D G+D++ ++ KTY+HR G RAG+ G
Sbjct: 381 KALKAFR-TGKIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGI 439
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 440 AVTLVDWDD 448
>gi|111023319|ref|YP_706291.1| cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
gi|110822849|gb|ABG98133.1| probable cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
Length = 555
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K LKAFR G + VLV +D G+D++ ++ KTY+HR G RAG+ G
Sbjct: 331 KALKAFR-TGKIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGI 389
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 390 AVTLVDWDD 398
>gi|17232210|ref|NP_488758.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
gi|17133855|dbj|BAB76417.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
Length = 426
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 22 LLRNLGGEKFIVFA--SSVANSPKT--LKAFRGKGHMQVLVCSDAMTSGMDVERAAYI-- 75
L++ LG E+ A + + S +T L F+ G +QVLV +D G+D+ Y+
Sbjct: 263 LVKQLGHERIQALAIHGNKSQSARTHALAKFK-NGSLQVLVATDIAARGLDISELPYVVN 321
Query: 76 -------KTYIHRAGPRARAGQNGHCFTLLPKDEDKLL 106
+ Y+HR G RAG +G +L+ DE LL
Sbjct: 322 FDLPYVPEDYVHRIGRTGRAGASGEAVSLVSADEYHLL 359
>gi|422007945|ref|ZP_16354930.1| ATP-dependent RNA helicase with P-loop hydrolase domain
[Providencia rettgeri Dmel1]
gi|414096080|gb|EKT57739.1| ATP-dependent RNA helicase with P-loop hydrolase domain
[Providencia rettgeri Dmel1]
Length = 432
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 27/121 (22%)
Query: 52 GHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDE 102
G ++VLV +D G+D+E+ Y+ + Y+HR G RA G +L+ DE
Sbjct: 282 GDIRVLVATDIAARGLDIEQLPYVVNFELPNVAEDYVHRIGRTGRAEATGMAVSLVCIDE 341
Query: 103 DKLLYMFQVKRFKKLLQQADHDSCPVHSI----PSSSIESLRPIYKSEYVESQANRKRKI 158
KLL K +KLL++ S P+ +I P SI++ PI K+ Q N +R
Sbjct: 342 AKLL-----KDIEKLLKK----SIPLMAIEGYEPDPSIKA-EPIQKT----PQRNERRSG 387
Query: 159 G 159
G
Sbjct: 388 G 388
>gi|330504959|ref|YP_004381828.1| DEAD/DEAH box helicase [Pseudomonas mendocina NK-01]
gi|328919245|gb|AEB60076.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
mendocina NK-01]
Length = 447
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 14/105 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+ F+ G +Q+LV +D G+D++ + + Y+HR G RAG G
Sbjct: 285 RALERFKA-GEVQILVATDVAARGLDIDDLPLVVNLDLPINAEDYVHRIGRTGRAGSTGE 343
Query: 94 CFTLLPKDE-DKLLYMFQVKRFKKLLQQADH-DSCPVHSIPSSSI 136
+L+ DE D+L + + ++L+++ D D P H +P +++
Sbjct: 344 AISLVCADEVDQLAAIENLT--QQLIKRVDEPDFIPDHRVPLTAV 386
>gi|330794252|ref|XP_003285194.1| hypothetical protein DICPUDRAFT_7134 [Dictyostelium purpureum]
gi|325084915|gb|EGC38333.1| hypothetical protein DICPUDRAFT_7134 [Dictyostelium purpureum]
Length = 434
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 47/122 (38%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRG---------------------- 50
K K YL+ +L L G I+F S+ A+S K R
Sbjct: 234 KYKECYLVYILNELAGNLTIIFTSTCASSNKVTLMLRNLGLAAIPINGDMDQAKRLASLS 293
Query: 51 ---KGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+G +LV +D G+D+ + K YIHR G ARAG +G TL+
Sbjct: 294 KFKQGTKSILVATDVAARGLDIPMVDLVINYDVPTNSKEYIHRVGRTARAGNSGRAITLV 353
Query: 99 PK 100
+
Sbjct: 354 TQ 355
>gi|198285649|gb|ACH85363.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Salmo salar]
Length = 611
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 22/118 (18%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
TLK FR G +VLV ++ G+D+ + ++YIHR+G RAG+ G C
Sbjct: 326 TLKGFR-SGTFEVLVATNVAARGLDIPEVDLVVQCSPPKDVESYIHRSGRTGRAGRTGVC 384
Query: 95 FTLLP-KDEDKLLYMFQ----------VKRFKKLLQQADHDSCP-VHSIPSSSIESLR 140
K+ED+L Y+ Q V +++ + D+ + S+P +IE R
Sbjct: 385 ICFYQRKEEDQLRYVEQKAGITFKRVGVPTANDIIKSSSKDAVRFLDSVPPQAIEYFR 442
>gi|159488923|ref|XP_001702450.1| RNA helicase [Chlamydomonas reinhardtii]
gi|158271118|gb|EDO96945.1| RNA helicase [Chlamydomonas reinhardtii]
Length = 737
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 13/78 (16%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGH 93
+TL FR KG +L+ +D G+DV + A +TYIHR+G RAG +G
Sbjct: 400 QTLDGFR-KGRFAILIATDVAARGLDVTGIELVLMVDPPADWETYIHRSGRTGRAGSSGV 458
Query: 94 CFTLLPKDEDKLLYMFQV 111
C TL+ K K+ YM +
Sbjct: 459 CVTLVTK---KMEYMVPI 473
>gi|423580337|ref|ZP_17556448.1| hypothetical protein IIA_01852 [Bacillus cereus VD014]
gi|401217060|gb|EJR23760.1| hypothetical protein IIA_01852 [Bacillus cereus VD014]
Length = 389
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 11/73 (15%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
T++AFRG G +++L+ +D G+D++ ++ YIHR+G R G+ G
Sbjct: 276 TMRAFRG-GKVEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTV 334
Query: 95 FTLL-PKDEDKLL 106
+L+ P++E KLL
Sbjct: 335 VSLVTPQEERKLL 347
>gi|432334488|ref|ZP_19586164.1| cold-shock DEAD-box protein [Rhodococcus wratislaviensis IFP 2016]
gi|430778572|gb|ELB93819.1| cold-shock DEAD-box protein [Rhodococcus wratislaviensis IFP 2016]
Length = 544
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K LKAFR G + VLV +D G+D++ ++ KTY+HR G RAG+ G
Sbjct: 331 KALKAFR-TGKIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGI 389
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 390 AVTLVDWDD 398
>gi|428181028|gb|EKX49893.1| hypothetical protein GUITHDRAFT_159399 [Guillardia theta CCMP2712]
Length = 413
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 36/139 (25%)
Query: 14 LKPIYLIPLLRNLGGEKFIVFASS---------------------VANSPKT-----LKA 47
+K +YL+ L+RN + I+F + NS + L
Sbjct: 235 VKDVYLVHLVRNSEAKAMIIFVGRKTTCVFVQLLLEDIPCSCLVVLLNSRQNRRLAALDR 294
Query: 48 FRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
F+G G ++LV +D + G+D+ + + K YIHR G ARAG+ G +L+
Sbjct: 295 FKG-GRCRILVATDVASRGLDIPKVDLVINYDIPNDAKDYIHRVGRTARAGRTGTAVSLV 353
Query: 99 PKDEDKLLYMFQVKRFKKL 117
+ + +L++ + + KKL
Sbjct: 354 TQYDVELVHNIEAETEKKL 372
>gi|410867026|ref|YP_006981637.1| DEAD/DEAH box helicase [Propionibacterium acidipropionici ATCC
4875]
gi|410823667|gb|AFV90282.1| DEAD/DEAH box helicase [Propionibacterium acidipropionici ATCC
4875]
Length = 772
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 11/125 (8%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L AF+ KG + VLV +D G+DV+ + K Y+HR+G ARAG +G
Sbjct: 578 RVLAAFK-KGTLPVLVATDVAARGIDVDDVTLVLQVDPPMNSKDYLHRSGRTARAGHDGA 636
Query: 94 CFTL-LPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQA 152
+L LP + ++ + QA V I S S PI +++Y A
Sbjct: 637 VVSLVLPHQRRSMTRLYHGAGVTPVQTQATLGDERVAEIAGCSPVSDEPIAQADYDALVA 696
Query: 153 NRKRK 157
R +K
Sbjct: 697 PRPQK 701
>gi|419964790|ref|ZP_14480743.1| cold-shock DEAD-box protein [Rhodococcus opacus M213]
gi|414569902|gb|EKT80642.1| cold-shock DEAD-box protein [Rhodococcus opacus M213]
Length = 544
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K LKAFR G + VLV +D G+D++ ++ KTY+HR G RAG+ G
Sbjct: 331 KALKAFR-TGKIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGI 389
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 390 AVTLVDWDD 398
>gi|331005215|ref|ZP_08328608.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC1989]
gi|330420958|gb|EGG95231.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC1989]
Length = 464
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 52 GHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDE 102
G ++VLV +D G+D+E+ + + Y+HR G RAG G +L+ DE
Sbjct: 292 GKVRVLVATDIAARGLDIEQLPQVVNIDLPNVAEDYVHRIGRTGRAGATGQAVSLVSADE 351
Query: 103 DKLLYMFQVKRFKKLLQQADHDSC-PVHSIPSSSI 136
+ L + + +KLL + D P+H +P S +
Sbjct: 352 IQQLQDIE-RLIQKLLPRKLVDGYEPIHDVPESKL 385
>gi|328853252|gb|EGG02392.1| hypothetical protein MELLADRAFT_75483 [Melampsora larici-populina
98AG31]
Length = 486
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 75/185 (40%), Gaps = 39/185 (21%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPK--------------------------TLK 46
K K YL+ L L G+ IVF +V ++ + L
Sbjct: 283 KHKDTYLVYLANELSGKSLIVFTRTVHDASRLSLILRTLGFPAVPLHGQLSQSARLGALN 342
Query: 47 AFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
F+ G +LV +D + G+D+ + K YIHR G ARAG++G TL
Sbjct: 343 KFKS-GDQSLLVATDVASRGLDIPAVDCVINFDLPTNSKDYIHRVGRTARAGRSGKSITL 401
Query: 98 LPKDEDKLLYMFQ---VKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQANR 154
+ + + +LL + K+ + Q + + ++ E R + + E ++ NR
Sbjct: 402 VTQYDVELLQRIEGVIGKKMNEFEHQKEQVMVLGERVGEAAREVAREMREIERNGNKFNR 461
Query: 155 KRKIG 159
KRK G
Sbjct: 462 KRKSG 466
>gi|91772311|ref|YP_565003.1| DEAD/DEAH box helicase-like protein [Methanococcoides burtonii DSM
6242]
gi|91711326|gb|ABE51253.1| DEAD-box RNA helicase [Methanococcoides burtonii DSM 6242]
Length = 463
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 10/73 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
KTL+ F+ G ++VLV +D G+D+E +++ ++Y+HR G ARAG G
Sbjct: 285 KTLQNFK-SGQLRVLVATDIAARGIDIEDISHVINYDLPNIPESYVHRIGRTARAGAEGT 343
Query: 94 CFTLLPKDEDKLL 106
++ DE L
Sbjct: 344 AYSFCAADERDFL 356
>gi|224139612|ref|XP_002323192.1| predicted protein [Populus trichocarpa]
gi|222867822|gb|EEF04953.1| predicted protein [Populus trichocarpa]
Length = 551
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL FR +GH +LV +D G+DV I +T++HR+G RAG+ G
Sbjct: 327 RTLSGFR-EGHFNILVATDVAARGLDVPNVDLIIHYALPRCSETFVHRSGRTGRAGKKGT 385
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQ 119
+ +DE + + + + K L+
Sbjct: 386 AILIYTQDESRQVRIIERDTGCKFLE 411
>gi|377561113|ref|ZP_09790578.1| putative ATP-dependent RNA helicase [Gordonia otitidis NBRC 100426]
gi|377521674|dbj|GAB35743.1| putative ATP-dependent RNA helicase [Gordonia otitidis NBRC 100426]
Length = 546
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K LK FR G + VLV +D G+D++ ++ KTY+HR G RAG+ G
Sbjct: 317 KALKKFR-SGDIDVLVATDVAARGIDIDDVTHVINYQCPDDDKTYVHRIGRTGRAGRTGI 375
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 376 AITLVDWDE 384
>gi|328543973|ref|YP_004304082.1| DEAD/DEAH box helicase [Polymorphum gilvum SL003B-26A1]
gi|326413717|gb|ADZ70780.1| DEAD/DEAH box helicase domain protein [Polymorphum gilvum
SL003B-26A1]
Length = 486
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 29/135 (21%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL++FR KG + +LV SD G+D+ +++ + Y+HR G RAG++G
Sbjct: 286 QTLESFR-KGTLTLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGV 344
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQAN 153
+TL+ ++ K L + KL+ + SI L E E++
Sbjct: 345 SYTLVTGEDSKYLSAIE-----KLINK--------------SITWLGEPLDFEAAEAERK 385
Query: 154 RKRKIGFKLSRMVKG 168
+R+ G R +G
Sbjct: 386 ERRRAGKGTGRTARG 400
>gi|134097656|ref|YP_001103317.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
gi|133910279|emb|CAM00392.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea
NRRL 2338]
Length = 496
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + +LV +D G+DV ++ KTY+HR G RAG+ G
Sbjct: 276 QALRAFR-SGKVDILVATDVAARGIDVGGVTHVVNLQCPDDEKTYVHRIGRTGRAGREGV 334
Query: 94 CFTLLPKDEDKLLYMF 109
TL+ DE+ M
Sbjct: 335 AITLVDWDEEPRWKMI 350
>gi|71425296|ref|XP_813075.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
Brener]
gi|70877926|gb|EAN91224.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
Length = 642
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 36 SSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRA 86
SS TLK FR G LVC+D ++ G+D Y+ T++HR+G
Sbjct: 488 SSATGKMGTLKLFRS-GVSTCLVCTDILSRGIDFHNVVYVVHYDTPLEFDTWVHRSGRCG 546
Query: 87 RAGQNGHCFTLLPKDEDKL 105
R G +G+C+T + KL
Sbjct: 547 RHGVSGYCYTFFQPESVKL 565
>gi|332293226|ref|YP_004431835.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
gi|332171312|gb|AEE20567.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
Length = 644
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 15/83 (18%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAGQNGHCF 95
+K+FR + +Q+LV +D G+DV+ + I+TY HR+G RAG+ G
Sbjct: 284 MKSFRNR-QIQMLVATDVAARGIDVDDITHVVNYQLPDEIETYTHRSGRTGRAGKTGTSL 342
Query: 96 TLLPKDEDKLLYMFQVKRFKKLL 118
++ K E M ++K+ +K+L
Sbjct: 343 VIVTKSE-----MRKIKQLEKIL 360
>gi|302384214|ref|YP_003820037.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264]
gi|302194842|gb|ADL02414.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides
ATCC 15264]
Length = 528
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL AF+ G ++VLV +D G+DV+ +++ + Y+HR G ARAG +G
Sbjct: 299 RTLAAFKA-GKLRVLVATDIAARGIDVDGVSHVVNFELPFVPEAYVHRIGRTARAGADGS 357
Query: 94 CFTLLPKDEDKLL 106
+ + DE KLL
Sbjct: 358 AISFVAGDEMKLL 370
>gi|225025644|ref|ZP_03714836.1| hypothetical protein EIKCOROL_02546 [Eikenella corrodens ATCC
23834]
gi|224941594|gb|EEG22803.1| hypothetical protein EIKCOROL_02546 [Eikenella corrodens ATCC
23834]
Length = 466
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 24/110 (21%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL AF+ G ++VLV +D G+D+ ++ + Y+HR G RAG G
Sbjct: 290 ETLNAFKA-GELRVLVATDVAARGLDIAELPFVINYEMPTQAEDYVHRIGRTGRAGAEGV 348
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIY 143
+L+ +DE K MF+ K+L+ + +P IE P +
Sbjct: 349 AISLMDEDEQK---MFEA--IKELIGK---------ELPVERIEGFEPRW 384
>gi|441516681|ref|ZP_20998428.1| putative ATP-dependent RNA helicase, partial [Gordonia hirsuta DSM
44140 = NBRC 16056]
gi|441456474|dbj|GAC56389.1| putative ATP-dependent RNA helicase, partial [Gordonia hirsuta DSM
44140 = NBRC 16056]
Length = 464
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L FR +G++ VLV +D G+D++ ++ KTY+HR G RAG+ G
Sbjct: 332 KALGKFR-EGNIDVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGRTGT 390
Query: 94 CFTLLPKDE 102
T + DE
Sbjct: 391 AITFVDWDE 399
>gi|399001288|ref|ZP_10704004.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM18]
gi|398127935|gb|EJM17335.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM18]
Length = 618
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 20/110 (18%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G +++LV +D G+D+++ ++ + Y+HR G RAG++G
Sbjct: 290 KALADFKA-GEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGE 348
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQ--ADHDSCPVHSIPSSSIESLRP 141
+L+ DE+KLL K +++ +Q AD D + SS++E+ +P
Sbjct: 349 AISLVAPDEEKLL-----KSIERMTKQKIADGD---LMGFDSSAVEAEKP 390
>gi|397736750|ref|ZP_10503428.1| cold-shock DEAD box protein A [Rhodococcus sp. JVH1]
gi|396927331|gb|EJI94562.1| cold-shock DEAD box protein A [Rhodococcus sp. JVH1]
Length = 602
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K LKAFR G + VLV +D G+D++ ++ KTY+HR G RAG+ G
Sbjct: 381 KALKAFR-TGKIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGI 439
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 440 AVTLVDWDD 448
>gi|373252738|ref|ZP_09540856.1| superfamily II DNA and RNA helicase [Nesterenkonia sp. F]
Length = 529
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 20/103 (19%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
++L AF G+G +QVLV +D G+ V+ + K Y+HR+G ARAG G
Sbjct: 311 RSLAAF-GQGDVQVLVATDVAARGVHVDAIELVVHVDPPAEHKAYLHRSGRTARAGSAGD 369
Query: 94 CFT-LLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
T +LP+ Q + ++LL++A D+ PV P S+
Sbjct: 370 VVTVMLPE---------QRRDTEQLLRKAAIDAKPVSVTPDST 403
>gi|373110372|ref|ZP_09524641.1| hypothetical protein HMPREF9712_02234 [Myroides odoratimimus CCUG
10230]
gi|423130562|ref|ZP_17118237.1| hypothetical protein HMPREF9714_01637 [Myroides odoratimimus CCUG
12901]
gi|423134260|ref|ZP_17121907.1| hypothetical protein HMPREF9715_01682 [Myroides odoratimimus CIP
101113]
gi|423326978|ref|ZP_17304786.1| hypothetical protein HMPREF9711_00360 [Myroides odoratimimus CCUG
3837]
gi|371643014|gb|EHO08572.1| hypothetical protein HMPREF9712_02234 [Myroides odoratimimus CCUG
10230]
gi|371644421|gb|EHO09952.1| hypothetical protein HMPREF9714_01637 [Myroides odoratimimus CCUG
12901]
gi|371647017|gb|EHO12527.1| hypothetical protein HMPREF9715_01682 [Myroides odoratimimus CIP
101113]
gi|404607548|gb|EKB07050.1| hypothetical protein HMPREF9711_00360 [Myroides odoratimimus CCUG
3837]
Length = 627
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 12/89 (13%)
Query: 37 SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRAR 87
S A +K+FRGK +Q+LV +D G+DV+ + I+TY HR+G R
Sbjct: 277 SQAQRDAVMKSFRGK-QIQMLVATDVAARGIDVDDITHVVNYQLPDEIETYTHRSGRTGR 335
Query: 88 AGQNGHCFTLLPKDEDKLLYMFQVKRFKK 116
AG++G ++ K E L + Q++R K
Sbjct: 336 AGKSGTSMVIVTKSE--LRKIQQIERIIK 362
>gi|295394794|ref|ZP_06805009.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
49030]
gi|294972390|gb|EFG48250.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
49030]
Length = 586
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 26/147 (17%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+T++A R G + +LV +D G+DVER + + ++Y+HR G RAG+ G
Sbjct: 296 RTVEALR-SGSIDILVATDVAARGLDVERISLVVNFDIPHDTESYVHRIGRTGRAGRTGE 354
Query: 94 CFTLLPKDEDKL--------------LYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESL 139
+ E++L L M V+ Q D H++ S + L
Sbjct: 355 AILFVTPRENRLLKAIEKATRQKVEPLVMPTVEELTVTRTQKFQDRIS-HTLNSQDLSEL 413
Query: 140 RPIYKSEYVESQANRKRKIGFKLSRMV 166
RP+ + EYV + + L+ +V
Sbjct: 414 RPVIE-EYVNTHNVPAEDVAAALASLV 439
>gi|291006385|ref|ZP_06564358.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea
NRRL 2338]
Length = 467
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + +LV +D G+DV ++ KTY+HR G RAG+ G
Sbjct: 276 QALRAFR-SGKVDILVATDVAARGIDVGGVTHVVNLQCPDDEKTYVHRIGRTGRAGREGV 334
Query: 94 CFTLLPKDEDKLLYMF 109
TL+ DE+ M
Sbjct: 335 AITLVDWDEEPRWKMI 350
>gi|399992257|ref|YP_006572497.1| ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis DSM
17395 = CIP 105210]
gi|400753930|ref|YP_006562298.1| ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis 2.10]
gi|398653083|gb|AFO87053.1| putative ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis
2.10]
gi|398656812|gb|AFO90778.1| putative ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis
DSM 17395 = CIP 105210]
Length = 516
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 11/73 (15%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
KTL+ FR +G ++ LV SD G+DV +++ + Y+HR G RAG++G
Sbjct: 293 KTLEGFR-EGSLRFLVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGS 351
Query: 94 CFTL-LPKDEDKL 105
+ +PKDE L
Sbjct: 352 AMMICVPKDEKNL 364
>gi|159040018|ref|YP_001539271.1| DEAD/DEAH box helicase [Salinispora arenicola CNS-205]
gi|157918853|gb|ABW00281.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola
CNS-205]
Length = 469
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 11/78 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL FR +G M VLV +D G+ V+ + + K Y+HRAG ARAG+ G
Sbjct: 298 RTLAEFR-EGRMNVLVATDVAARGIHVDGVSLVLHVDPPKDPKDYLHRAGRTARAGEAGA 356
Query: 94 CFTL-LPKDEDKLLYMFQ 110
TL LPK L M +
Sbjct: 357 VATLALPKQRRGTLAMLE 374
>gi|268563805|ref|XP_002638939.1| Hypothetical protein CBG22166 [Caenorhabditis briggsae]
Length = 753
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQNGH 93
++L F+ KG + VLV +D + G+D+E IK YIHR G ARAG+ G
Sbjct: 451 ESLSKFK-KGEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGR 509
Query: 94 CFTLLPKDEDKLL 106
+L+ ++E KLL
Sbjct: 510 SISLVGEEERKLL 522
>gi|330793373|ref|XP_003284759.1| hypothetical protein DICPUDRAFT_148567 [Dictyostelium purpureum]
gi|325085359|gb|EGC38768.1| hypothetical protein DICPUDRAFT_148567 [Dictyostelium purpureum]
Length = 565
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 12/96 (12%)
Query: 19 LIPLLRNLGGEKFIV--FASSVANSPKTLKAFRGKGH-MQVLVCSDAMTSGMDVE----- 70
L+ L+ ++ KF ++S+++ + ++ R K + + VL+CSD M+ GMD+
Sbjct: 335 LLKLIGSVDNIKFTCEEYSSALSTTERSSLLNRFKSNEINVLICSDIMSRGMDISDIDVV 394
Query: 71 ----RAAYIKTYIHRAGPRARAGQNGHCFTLLPKDE 102
I Y+HR G ARAG++G +T++ K E
Sbjct: 395 INYNSPPNITLYVHRVGRTARAGKHGFSYTIIDKQE 430
>gi|308497817|ref|XP_003111095.1| hypothetical protein CRE_03900 [Caenorhabditis remanei]
gi|308240643|gb|EFO84595.1| hypothetical protein CRE_03900 [Caenorhabditis remanei]
Length = 749
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQNGH 93
++L F+ KG + VLV +D + G+D+E IK YIHR G ARAG+ G
Sbjct: 441 ESLSKFK-KGEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGR 499
Query: 94 CFTLLPKDEDKLL 106
+L+ ++E KLL
Sbjct: 500 SISLVGEEERKLL 512
>gi|228920836|ref|ZP_04084175.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228838767|gb|EEM84069.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 389
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 11/73 (15%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
T++AFRG G +++L+ +D G+D++ ++ YIHR+G R G+ G
Sbjct: 276 TMRAFRG-GKVEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTV 334
Query: 95 FTLL-PKDEDKLL 106
+L+ P++E KLL
Sbjct: 335 VSLVTPQEERKLL 347
>gi|4104820|gb|AAD02177.1| RNA helicase [Anabaena variabilis]
Length = 425
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 22 LLRNLGGEKFIVFA--SSVANSPKT--LKAFRGKGHMQVLVCSDAMTSGMDVERAAYI-- 75
L++ LG E+ A + + S +T L F+ G +QVLV +D G+D+ Y+
Sbjct: 262 LVKQLGHERIQALAIHGNKSQSARTHALAKFKN-GSLQVLVATDIAARGLDISELPYVVN 320
Query: 76 -------KTYIHRAGPRARAGQNGHCFTLLPKDEDKLL 106
+ Y+HR G RAG +G +L+ DE LL
Sbjct: 321 FDLPYVPEDYVHRIGRTGRAGASGEAVSLVSADEYHLL 358
>gi|433602752|ref|YP_007035121.1| DEAD/DEAH box helicase domain protein [Saccharothrix espanaensis
DSM 44229]
gi|407880605|emb|CCH28248.1| DEAD/DEAH box helicase domain protein [Saccharothrix espanaensis
DSM 44229]
Length = 874
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLV +D G+DVE ++ KTY+HR G RAG+ G
Sbjct: 380 QALRAFR-SGKIDVLVATDVAARGIDVEGVTHVINYQCPEDEKTYVHRIGRTGRAGRTGV 438
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 439 AVTLVDWDE 447
>gi|298207628|ref|YP_003715807.1| ATP-dependent RNA helicase [Croceibacter atlanticus HTCC2559]
gi|83850264|gb|EAP88132.1| putative ATP-dependent RNA helicase [Croceibacter atlanticus
HTCC2559]
Length = 424
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 15/87 (17%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K LKAF+ G+++V+V +D G+D+++ Y+ +TY+HR G RAG++G
Sbjct: 286 KALKAFK-DGNIRVMVATDIAARGIDIDKLEYVINYDIPNEPETYVHRIGRCGRAGEDGI 344
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQ 120
++ +E + +K +KL++Q
Sbjct: 345 AISIGEPEEIQF-----IKDIEKLIKQ 366
>gi|91793881|ref|YP_563532.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
gi|91715883|gb|ABE55809.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
Length = 426
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+ F+ G +QVL+ +D G+D+E+ + Y+HR G RAG+ G
Sbjct: 292 RVLEGFKA-GDIQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGL 350
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQAN 153
+LL DE + + K +L ++ +P + +E +P+ K E
Sbjct: 351 ALSLLSHDEYHHFTVIEKKNKIRLEREQVAGFEADEQMPEALLEQEKPMAKP---EGTGK 407
Query: 154 RKRKI 158
+KRK+
Sbjct: 408 KKRKV 412
>gi|325262198|ref|ZP_08128936.1| ATP-dependent RNA helicase DbpA [Clostridium sp. D5]
gi|324033652|gb|EGB94929.1| ATP-dependent RNA helicase DbpA [Clostridium sp. D5]
Length = 481
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 19/123 (15%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
KT+ AFR +G + L+ +D G+D E+ ++ +TY+HR G R G+NG
Sbjct: 282 KTVDAFR-RGCFRFLIATDVAARGIDFEQITHVVNYDFPSKKETYVHRIG---RTGRNGK 337
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQAN 153
C T + L + KR + +++ P +P E + +KS++++ +
Sbjct: 338 CGTAIS------LVTEEDKRMLRQVEEYAGRQLPFTELPVLDEEKEKTFWKSQHIKVEVK 391
Query: 154 RKR 156
K+
Sbjct: 392 PKK 394
>gi|156333010|ref|XP_001619345.1| hypothetical protein NEMVEDRAFT_v1g64197 [Nematostella vectensis]
gi|156202357|gb|EDO27245.1| predicted protein [Nematostella vectensis]
Length = 244
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 10/75 (13%)
Query: 37 SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRAR 87
S A +K+FRG+ +Q+LV +D G+DV+ ++ +TY HR+G R
Sbjct: 151 SQAQRDGVMKSFRGR-QIQMLVATDVAARGIDVDDITHVINYQLPDEVETYTHRSGRTGR 209
Query: 88 AGQNGHCFTLLPKDE 102
AG++G ++ K E
Sbjct: 210 AGKSGTSLVIITKSE 224
>gi|381169049|ref|ZP_09878224.1| Putative ATP-dependent RNA helicase [Phaeospirillum molischianum
DSM 120]
gi|380681838|emb|CCG43046.1| Putative ATP-dependent RNA helicase [Phaeospirillum molischianum
DSM 120]
Length = 536
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 10/70 (14%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
TL++F+ KG ++++VCSD G+DV +++ + Y+HR G RAG G
Sbjct: 284 TLESFK-KGEIRLMVCSDVAARGIDVSAVSHVFNFDVPIHAEDYVHRIGRTGRAGMAGRA 342
Query: 95 FTLLPKDEDK 104
FT+ D+ K
Sbjct: 343 FTIAIPDDGK 352
>gi|218676102|ref|YP_002394921.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
gi|218324370|emb|CAV25741.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
Length = 523
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 61/111 (54%), Gaps = 15/111 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L+ F+ G ++VLV +D G+D+ + + + Y+HR G RAG+ G
Sbjct: 284 KALENFK-TGKVRVLVATDIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGK 342
Query: 94 CFTLLPKDEDKLLYMFQVKRF-KKLLQQADHDS-CPVHSIPSSSIESLRPI 142
+L+ DE + +F ++R +++L++ + + PV+ +P S ++S RPI
Sbjct: 343 AISLVCADE--VGELFGIERLIQQVLERRELEGFAPVNKLPESRLDS-RPI 390
>gi|399522043|ref|ZP_10762708.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
pseudoalcaligenes CECT 5344]
gi|399110078|emb|CCH39268.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
pseudoalcaligenes CECT 5344]
Length = 449
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 14/105 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+ F+ G +Q+LV +D G+D++ + + Y+HR G RAG G
Sbjct: 285 RALERFKA-GEVQILVATDVAARGLDIDDLPLVVNLDLPINAEDYVHRIGRTGRAGSTGE 343
Query: 94 CFTLLPKDE-DKLLYMFQVKRFKKLLQQADH-DSCPVHSIPSSSI 136
+L+ DE D+L + + ++L+++ D D P H +P +++
Sbjct: 344 AISLVCADEVDQLAAIENLT--QQLIKRVDEPDFIPDHRVPLTAV 386
>gi|398886255|ref|ZP_10641142.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM60]
gi|398190370|gb|EJM77600.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM60]
Length = 624
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 20/110 (18%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G +++LV +D G+D+++ ++ + Y+HR G RAG++G
Sbjct: 290 KALADFKA-GEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGE 348
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQ--ADHDSCPVHSIPSSSIESLRP 141
+L+ DE+KLL K +++ +Q AD D + SS++E+ +P
Sbjct: 349 AISLVAPDEEKLL-----KSIERMTKQKIADGD---LMGFDSSAVEAEKP 390
>gi|329891295|ref|ZP_08269638.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
ATCC 11568]
gi|328846596|gb|EGF96160.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
ATCC 11568]
Length = 589
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 10/73 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AF+ G ++VLV +D G+DV++ ++ + Y+HR G ARAG++G
Sbjct: 288 RALEAFK-NGKLRVLVATDIAARGIDVDKVTHVVNFELPYVPEAYVHRIGRTARAGKDGT 346
Query: 94 CFTLLPKDEDKLL 106
+ + DE KLL
Sbjct: 347 AISFVAGDEMKLL 359
>gi|440694929|ref|ZP_20877502.1| putative ATP-dependent RNA helicase DeaD [Streptomyces
turgidiscabies Car8]
gi|440282994|gb|ELP70363.1| putative ATP-dependent RNA helicase DeaD [Streptomyces
turgidiscabies Car8]
Length = 1034
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLVC+D G+DVE ++ KTY+HR G RAG G
Sbjct: 331 QALRAFR-NGKVDVLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGI 389
Query: 94 CFTLLPKDE 102
TL+ D+
Sbjct: 390 AITLVDWDD 398
>gi|398881140|ref|ZP_10636153.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM67]
gi|398190475|gb|EJM77698.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM67]
Length = 624
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 20/110 (18%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G +++LV +D G+D+++ ++ + Y+HR G RAG++G
Sbjct: 290 KALADFKA-GEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGE 348
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQ--ADHDSCPVHSIPSSSIESLRP 141
+L+ DE+KLL K +++ +Q AD D + SS++E+ +P
Sbjct: 349 AISLVAPDEEKLL-----KSIERMTKQKIADGD---LMGFDSSAVEAEKP 390
>gi|322792436|gb|EFZ16420.1| hypothetical protein SINV_14603 [Solenopsis invicta]
Length = 261
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 29/150 (19%)
Query: 22 LLRNLGGEKFIVFASSVAN-SPKTLKAFRGK---GHMQVLVCSDAMTSGMDV-------- 69
L+++L E+ + A +PK ++ GK + VL+ SDA+ G+D+
Sbjct: 109 LMQSLLSERNVTVGELSAQLAPKQRESVLGKFANAEIHVLISSDALARGLDILDVQLVVS 168
Query: 70 -ERAAYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPV 128
+ +IK YIHRAG RAG+ G ++L + Q+ FK++L A H + P
Sbjct: 169 YDCPKHIKGYIHRAGRTGRAGKPGTAVSILTAN--------QIGIFKQMLSAA-HKTVP- 218
Query: 129 HSIPSSSIESLRPIYKSEYVESQANRKRKI 158
+IE + ++ V Q++R++ I
Sbjct: 219 ------NIEQMDLHAIAKMVNYQSHRQKLI 242
>gi|283779149|ref|YP_003369904.1| DEAD/DEAH box helicase [Pirellula staleyi DSM 6068]
gi|283437602|gb|ADB16044.1| DEAD/DEAH box helicase domain protein [Pirellula staleyi DSM 6068]
Length = 598
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL AF+ GH+QVLV +D G+DV +++ +TY+HR G RAG++G
Sbjct: 287 RTLYAFK-NGHIQVLVATDVAARGLDVTGVSHVINYDLPMEPETYVHRIGRTGRAGKSGI 345
Query: 94 CFTLLPKDEDKLLYMFQ 110
+ ++ LL Q
Sbjct: 346 AISFCDDEQRGLLRDVQ 362
>gi|71423359|ref|XP_812432.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
Brener]
gi|70877211|gb|EAN90581.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
Length = 642
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 36 SSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRA 86
SS TLK FR G LVC+D ++ G+D Y+ T++HR+G
Sbjct: 488 SSATGKMGTLKLFRS-GVSTCLVCTDILSRGIDFHNVVYVVHYDTPLEFDTWVHRSGRCG 546
Query: 87 RAGQNGHCFTLLPKDEDKL 105
R G +G+C+T + KL
Sbjct: 547 RHGVSGYCYTFFQPESVKL 565
>gi|449666070|ref|XP_002163050.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like, partial
[Hydra magnipapillata]
Length = 431
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
+K K YL+ +L +L G FI+F + N + R G H Q
Sbjct: 218 NKFKDCYLVSILNDLAGNSFIIFCGTCNNVQRVCLLLRHLGFHAVPLHGQMTQAKRLGAL 277
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 278 NKYKSKSRTILIATDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITF 337
Query: 98 LPK 100
+ +
Sbjct: 338 VTQ 340
>gi|302524385|ref|ZP_07276727.1| cold-shock DEAD-box protein [Streptomyces sp. AA4]
gi|302433280|gb|EFL05096.1| cold-shock DEAD-box protein [Streptomyces sp. AA4]
Length = 522
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 10/70 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLV +D G+D++ ++ KTY+HR G RAG+ G
Sbjct: 276 QALRAFR-SGKVDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGV 334
Query: 94 CFTLLPKDED 103
TL+ DE+
Sbjct: 335 AITLVDWDEE 344
>gi|357116154|ref|XP_003559848.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 10-like
[Brachypodium distachyon]
Length = 449
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 17/161 (10%)
Query: 8 QICESKLKPIYLIPLLRNLGGEKFIVFASSVANSPK--TLKAFRGKGHMQVLVCSDAMTS 65
+ CES L LRNLG K + + ++ + L F+ K +L+C+D +
Sbjct: 265 RTCESTR---LLALTLRNLGF-KALSISGQMSQDKRLGALNKFKAK-DFNILICTDVASR 319
Query: 66 GMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKK 116
G+D++ + K YIHR G ARAG++G+ +L+ + E + M + KK
Sbjct: 320 GLDIQGVDAVINYDIPMNSKDYIHRVGRTARAGKSGYAVSLVNQYETEWFKMIEALLGKK 379
Query: 117 LLQQADHDSCPVHSIPSSSIESLRPIYKSEYVESQANRKRK 157
+ D+ + I I R I ++ E ++KR+
Sbjct: 380 IGDPRKVDADEIM-ILREHISDSRRIALTKLKEDGGSKKRR 419
>gi|254284072|ref|ZP_04959040.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
gi|219680275|gb|EED36624.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
Length = 598
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
KT+ +F+ +G + +LV +D G+DV+R +++ + YIHR G RAG+ G
Sbjct: 288 KTVDSFK-RGQLDLLVATDVAARGLDVDRVSHVINYDIPNDPEAYIHRIGRTGRAGRTGE 346
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQ 119
K E +LL+ + +K+ Q
Sbjct: 347 AILFAAKRERRLLHAIERTTGQKIDQ 372
>gi|56552313|ref|YP_163152.1| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis
subsp. mobilis ZM4]
gi|260753995|ref|YP_003226888.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|384412590|ref|YP_005621955.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|56543887|gb|AAV90041.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis ZM4]
gi|258553358|gb|ACV76304.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|335932964|gb|AEH63504.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 458
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L AFR G +++LV +D G+DV +++ + Y+HR G ARAG++G
Sbjct: 291 RALNAFR-NGRLKILVATDIAARGIDVPGVSHVFNYELPNVAEQYVHRIGRTARAGRDGQ 349
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKL 117
+ + DE Y+ ++R ++
Sbjct: 350 AISFIANDERS--YLRSIERLTRV 371
>gi|403387302|ref|ZP_10929359.1| ATP-dependent RNA helicase [Clostridium sp. JC122]
Length = 367
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ +KAFR +Q L+ +D + G+DV +I ++YIHR G RAG++G+
Sbjct: 280 RIMKAFRN-ADIQYLIATDVASRGLDVSGVTHIYNYDIPESVESYIHRIGRTGRAGESGY 338
Query: 94 -CFTLLPKDEDKLLYMFQVKRFK 115
C + PK+E L + + FK
Sbjct: 339 TCLFVDPKNERMLQEIEEAIEFK 361
>gi|378953384|ref|YP_005210872.1| protein RhlE1 [Pseudomonas fluorescens F113]
gi|359763398|gb|AEV65477.1| RhlE1 [Pseudomonas fluorescens F113]
Length = 623
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 20/110 (18%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G +++LV +D G+D+++ ++ + Y+HR G RAG++G
Sbjct: 290 KALADFKA-GEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGE 348
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQ--ADHDSCPVHSIPSSSIESLRP 141
+L+ DE+KLL K +++ +Q AD D + +S+IE+ +P
Sbjct: 349 AISLVAPDEEKLL-----KSIERMTKQKIADGD---LMGFDASTIEAEKP 390
>gi|330812324|ref|YP_004356786.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|423699836|ref|ZP_17674326.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens
Q8r1-96]
gi|327380432|gb|AEA71782.1| putative ATP-dependent RNA helicase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|387996412|gb|EIK57742.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens
Q8r1-96]
Length = 622
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 20/110 (18%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G +++LV +D G+D+++ ++ + Y+HR G RAG++G
Sbjct: 290 KALADFKA-GEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGE 348
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQ--ADHDSCPVHSIPSSSIESLRP 141
+L+ DE+KLL K +++ +Q AD D + +S+IE+ +P
Sbjct: 349 AISLVAPDEEKLL-----KSIERMTKQKIADGD---LMGFDASTIEAEKP 390
>gi|429330588|ref|ZP_19211374.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida CSV86]
gi|428764698|gb|EKX86827.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida CSV86]
Length = 441
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 39 ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAG 89
A + L +F+ + +Q+LV +D G+D++ + + Y+HR G RAG
Sbjct: 281 ATRQRALDSFKAR-EVQILVATDVAARGLDIDDLPLVVNFDLPIVAEDYVHRIGRTGRAG 339
Query: 90 QNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSS 135
G +L+ DE +LL + K L + + P H +P +
Sbjct: 340 NTGEAISLVCADEVQLLSAIETLTRKTLPRHDEPGFEPDHRVPVTD 385
>gi|421496206|ref|ZP_15943443.1| ATP-dependent RNA helicase RhlE [Aeromonas media WS]
gi|407184751|gb|EKE58571.1| ATP-dependent RNA helicase RhlE [Aeromonas media WS]
Length = 466
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 15/87 (17%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L F+ +G ++VLV +D G+D+++ + + Y+HR G RAG GH
Sbjct: 285 RALAGFK-EGSVKVLVATDIAARGLDIDKLPQVVNFELPNVAEDYVHRIGRTGRAGAAGH 343
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQ 120
+L+ DE KL +K ++L +Q
Sbjct: 344 AISLVAADEGKL-----IKAIERLTKQ 365
>gi|404450977|ref|ZP_11015952.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
gi|403763394|gb|EJZ24353.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
Length = 578
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 14/100 (14%)
Query: 37 SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRAR 87
S A K + FR KGH+ VLV +D G+DV+ + + Y+HR G R
Sbjct: 279 SQAQRTKVMNKFR-KGHVSVLVATDVAARGIDVDNVEAVFNFDLPLDEENYVHRIGRTGR 337
Query: 88 AGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCP 127
AG++G + +D MF+++ +K ++ P
Sbjct: 338 AGKSGTAINFVTGRKD----MFRIRDIEKFIKTTISKMAP 373
>gi|359765387|ref|ZP_09269216.1| putative ATP-dependent RNA helicase [Gordonia polyisoprenivorans
NBRC 16320]
gi|359317208|dbj|GAB22049.1| putative ATP-dependent RNA helicase [Gordonia polyisoprenivorans
NBRC 16320]
Length = 553
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K LK FR G + VLV +D G+D++ ++ KTY+HR G RAG+ G
Sbjct: 335 KALKKFR-TGEIDVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGRTGI 393
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 394 AVTLVDWDE 402
>gi|424925392|ref|ZP_18348753.1| Superfamily II DNA and RNA helicase [Pseudomonas fluorescens R124]
gi|404306552|gb|EJZ60514.1| Superfamily II DNA and RNA helicase [Pseudomonas fluorescens R124]
Length = 622
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 20/110 (18%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ G +++LV +D G+D+++ ++ + Y+HR G RAG++G
Sbjct: 290 KALADFKA-GEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGE 348
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQ--ADHDSCPVHSIPSSSIESLRP 141
+L+ DE+KLL K +++ +Q AD D + +S+IE+ +P
Sbjct: 349 AISLVAPDEEKLL-----KSIERMTKQKIADGD---LMGFDASTIEAEKP 390
>gi|88808729|ref|ZP_01124239.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. WH 7805]
gi|88787717|gb|EAR18874.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. WH 7805]
Length = 429
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 10/87 (11%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+ F+ +G+++VLV +D G+D+++ ++ + Y+HR G RAG+ GH
Sbjct: 302 RALQGFK-QGNIRVLVATDIAARGIDIQQLPHVVNLDLPNVAEDYVHRIGRTGRAGETGH 360
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQ 120
+L+ +E LL + ++L +Q
Sbjct: 361 AVSLVAAEEALLLKAIERLTGEELTRQ 387
>gi|86144457|ref|ZP_01062789.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222]
gi|85837356|gb|EAQ55468.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222]
Length = 523
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 61/111 (54%), Gaps = 15/111 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L+ F+ G ++VLV +D G+D+ + + + Y+HR G RAG+ G
Sbjct: 284 KALENFK-TGKVRVLVATDIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGK 342
Query: 94 CFTLLPKDEDKLLYMFQVKRF-KKLLQQADHDS-CPVHSIPSSSIESLRPI 142
+L+ DE + +F ++R +++L++ + + PV+ +P S ++S RPI
Sbjct: 343 AISLVCADE--VGELFGIERLIQQVLERRELEGFAPVNKLPESRLDS-RPI 390
>gi|397677505|ref|YP_006519043.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis ATCC
29191]
gi|395398194|gb|AFN57521.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis ATCC 29191]
Length = 458
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L AFR G +++LV +D G+DV +++ + Y+HR G ARAG++G
Sbjct: 291 RALNAFR-NGRLKILVATDIAARGIDVPGVSHVFNYELPNVAEQYVHRIGRTARAGRDGQ 349
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKL 117
+ + DE Y+ ++R ++
Sbjct: 350 AISFIANDERS--YLRSIERLTRV 371
>gi|357607975|gb|EHJ65769.1| hypothetical protein KGM_22300 [Danaus plexippus]
Length = 929
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 21/114 (18%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGH 93
+ K FR H VL+C+D G+DV R A Y+HR G RA Q G
Sbjct: 682 EVFKQFRTAKH-GVLICTDVAARGLDVPRVDLVLQFCAPASATDYVHRVGRTGRAAQVGA 740
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEY 147
L E + + + KR + L+Q+D S ++E+LR + SE+
Sbjct: 741 ATMFLLPSEAEFVRHLEQKRIR--LRQSDE---------SKALEALRTVAPSEH 783
>gi|334336351|ref|YP_004541503.1| DEAD/DEAH box helicase [Isoptericola variabilis 225]
gi|334106719|gb|AEG43609.1| DEAD/DEAH box helicase domain protein [Isoptericola variabilis 225]
Length = 560
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR GH+ VLV +D G+DVE ++ +TY+HR G RAG G
Sbjct: 332 QALRAFR-HGHIDVLVATDVAARGIDVEDVTHVVNYQCPEDERTYLHRIGRTGRAGNKGT 390
Query: 94 CFTLLPKDE 102
T + D+
Sbjct: 391 AVTFVDWDD 399
>gi|84387538|ref|ZP_00990556.1| ATP-dependent RNA helicase RhlE [Vibrio splendidus 12B01]
gi|84377586|gb|EAP94451.1| ATP-dependent RNA helicase RhlE [Vibrio splendidus 12B01]
Length = 531
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 61/111 (54%), Gaps = 15/111 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L+ F+ G ++VLV +D G+D+ + + + Y+HR G RAG+ G
Sbjct: 284 KALENFK-TGKVRVLVATDIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGK 342
Query: 94 CFTLLPKDEDKLLYMFQVKRF-KKLLQQADHDS-CPVHSIPSSSIESLRPI 142
+L+ DE + +F ++R +++L++ + + PV+ +P S ++S RPI
Sbjct: 343 AISLVCADE--VGELFGIERLIQQVLERRELEGFAPVNKLPESRLDS-RPI 390
>gi|378718867|ref|YP_005283756.1| putative cold-shock DEAD-box protein [Gordonia polyisoprenivorans
VH2]
gi|375753570|gb|AFA74390.1| putative cold-shock DEAD-box protein [Gordonia polyisoprenivorans
VH2]
Length = 553
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K LK FR G + VLV +D G+D++ ++ KTY+HR G RAG+ G
Sbjct: 335 KALKKFR-TGEIDVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGRTGI 393
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 394 AVTLVDWDE 402
>gi|323345624|ref|ZP_08085847.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis
ATCC 33269]
gi|323093738|gb|EFZ36316.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis
ATCC 33269]
Length = 548
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 11/72 (15%)
Query: 52 GHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDE 102
G + V+V +D ++ G+D++ A + + Y+HR G ARA ++G TL+ +E
Sbjct: 294 GQLDVIVATDIISRGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGVAITLI--NE 351
Query: 103 DKLLYMFQVKRF 114
D + Y Q+++F
Sbjct: 352 DDIYYFQQIEKF 363
>gi|126649550|ref|ZP_01721791.1| hypothetical protein BB14905_06418 [Bacillus sp. B14905]
gi|126593875|gb|EAZ87798.1| hypothetical protein BB14905_06418 [Bacillus sp. B14905]
Length = 382
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAGQNGH 93
K L AFR KG ++L+ +D G+D+ + I+ Y+HR+G RAG +G
Sbjct: 276 KALDAFR-KGDARILIATDIAARGLDIAGLTHVIHVDVPRTIEQYLHRSGRTGRAGADGE 334
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHD 124
TLL ++K + + K +Q+ HD
Sbjct: 335 VLTLLSYQDEKAYKKWTREVPGKPVQKIWHD 365
>gi|21228658|ref|NP_634580.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
gi|20907159|gb|AAM32252.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
Length = 429
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 52 GHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDE 102
G++ VLVC+D G+D++ +++ K YIHR G ARAG G +L K++
Sbjct: 313 GNIGVLVCTDVAGRGLDIQGVSHVYNYDIPRESKQYIHRIGRTARAGTEGKAINILSKND 372
>gi|397685466|ref|YP_006522785.1| DEAD/DEAH box helicase [Pseudomonas stutzeri DSM 10701]
gi|395807022|gb|AFN76427.1| DEAD/DEAH box helicase [Pseudomonas stutzeri DSM 10701]
Length = 592
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 20/126 (15%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K L F+ +++LV +D G+D+++ ++ + Y+HR G RAG++G
Sbjct: 290 KALADFKAN-QVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGE 348
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQ--ADHDSCPVHSIPSSSIESLRPIYKSEYVESQ 151
+L+ DE+KLL K +++ +Q AD D + +S+IE+ +P + Q
Sbjct: 349 AISLVSPDEEKLL-----KGIERMTKQKIADGD---LMGFDASTIEAEKPETREPRQPRQ 400
Query: 152 ANRKRK 157
A +RK
Sbjct: 401 ARGERK 406
>gi|383828834|ref|ZP_09983923.1| DNA/RNA helicase, superfamily II [Saccharomonospora xinjiangensis
XJ-54]
gi|383461487|gb|EID53577.1| DNA/RNA helicase, superfamily II [Saccharomonospora xinjiangensis
XJ-54]
Length = 545
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+ L+AFR G + VLV +D G+DV+ ++ KTY+HR G RAG+ G
Sbjct: 295 QALRAFR-SGKVDVLVATDVAARGIDVDDVTHVVNYQTPEDEKTYVHRIGRTGRAGKTGV 353
Query: 94 CFTLLPKDE 102
TL+ DE
Sbjct: 354 AITLVDWDE 362
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,388,032,517
Number of Sequences: 23463169
Number of extensions: 88995747
Number of successful extensions: 218566
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 11658
Number of HSP's that attempted gapping in prelim test: 210914
Number of HSP's gapped (non-prelim): 12423
length of query: 168
length of database: 8,064,228,071
effective HSP length: 128
effective length of query: 40
effective length of database: 9,355,909,735
effective search space: 374236389400
effective search space used: 374236389400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 71 (32.0 bits)