BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048509
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7FGZ2|RH1_ARATH DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana
GN=RH1 PE=2 SV=3
Length = 522
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 105/197 (53%), Gaps = 53/197 (26%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------- 41
ICE+ +KP+YL+ LL++ GEK I+F SSV +
Sbjct: 316 ICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDPKIKAKEYSGGLNQS 375
Query: 42 --PKTLKAFRGKGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQ 90
K LKAFR KG +QVLV SDA+T GMDV + + KT+IHRAG ARAGQ
Sbjct: 376 LRSKELKAFR-KGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRTARAGQ 434
Query: 91 NGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYK------ 144
G CFTLL E V+RF KLL++ DSCP++ IP +S++S+R Y
Sbjct: 435 AGRCFTLLSNHE--------VRRFSKLLEKVGSDSCPIYPIPPTSLDSIRATYTPALEKL 486
Query: 145 SEYVESQANRKRKIGFK 161
E VES+A +K + F+
Sbjct: 487 KELVESEAPKKGRQAFR 503
>sp|Q0DWT8|RH1_ORYSJ DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sativa subsp.
japonica GN=Os02g0795900 PE=2 SV=1
Length = 521
Score = 119 bits (298), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 106/197 (53%), Gaps = 53/197 (26%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------- 41
+C+S LKP+ LI LL+ L GEK +VF SSV +S
Sbjct: 321 VCKSNLKPLSLIVLLQELRGEKCLVFTSSVESSHRLSTLLEFFEDLPFKFSEYSRLQRES 380
Query: 42 --PKTLKAFRGKGHMQVLVCSDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQ 90
KTL AF+ +G + VL+ +D M G+ ++ Y+KTYIHRAG ARAG+
Sbjct: 381 TRRKTLDAFK-EGKIDVLIGTDRMARGIHIDGLRYVINYDMPPYVKTYIHRAGRTARAGE 439
Query: 91 NGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS----- 145
+G CFT L K E VK F K+L++AD+ SC +HS+P S+E+LRP++ S
Sbjct: 440 SGSCFTFLRKHE--------VKAFDKMLKKADNSSCSLHSLPEESVETLRPVFSSALKKL 491
Query: 146 -EYVESQANRKRKIGFK 161
E +ES+A +K K G K
Sbjct: 492 EESLESEATKKSKSGDK 508
>sp|Q8N8A6|DDX51_HUMAN ATP-dependent RNA helicase DDX51 OS=Homo sapiens GN=DDX51 PE=1 SV=3
Length = 666
Score = 62.0 bits (149), Expect = 2e-09, Method: Composition-based stats.
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 45/185 (24%)
Query: 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKT---LKAFRG---------------- 50
C KP+ ++ L+ +G + + F +S NS + ++AF G
Sbjct: 486 CSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGGVDVAEFSSRYGPGQRR 545
Query: 51 -------KGHMQVLVCSDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQNGHC 94
+G +Q+L+ +DA G+DV+ Y++TY+HR G ARAG+ G
Sbjct: 546 MILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQA 605
Query: 95 FTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKS--EYVESQA 152
FTLL K Q +RF ++L +A H + S ++ L P Y+ +E
Sbjct: 606 FTLLLK--------VQERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYEEALSQLEESV 657
Query: 153 NRKRK 157
+RK
Sbjct: 658 KEERK 662
>sp|Q6DRI7|DDX51_DANRE ATP-dependent RNA helicase DDX51 OS=Danio rerio GN=ddx51 PE=2 SV=1
Length = 652
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 26/164 (15%)
Query: 1 MSVNLSPQICESKLKP----IYLIPLLRNLGGEKFIVFAS--SVANSPKTLKAFRGKGHM 54
+ + SP +C + + +YL L++ GG + F+S S KTLK F KG +
Sbjct: 486 LRLKFSPALCFTNSREGAHRLYL--LVKLFGGVEVAEFSSKLSPGERQKTLKDFE-KGKI 542
Query: 55 QVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKL 105
+L+ +DA G+D+ + YI+TYIHR G ARAG+ G FT L K
Sbjct: 543 PLLISTDAAARGIDINGVKCVINYDAPQYIRTYIHRVGRTARAGKAGLAFTFLLK----- 597
Query: 106 LYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYVE 149
Q KRF K++ A + +++S+ Y+ E
Sbjct: 598 ---VQEKRFLKMVSDAGSPGIQKQHVHPEALKSMESRYEQVLAE 638
>sp|Q6P9R1|DDX51_MOUSE ATP-dependent RNA helicase DDX51 OS=Mus musculus GN=Ddx51 PE=2 SV=1
Length = 639
Score = 56.6 bits (135), Expect = 7e-08, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 20/151 (13%)
Query: 22 LLRNLGGEKFIVFASSVA--NSPKTLKAFRGKGHMQVLVCSDAMTSGMDVE--------- 70
L + GG F+S K LK F +G +Q+L+ +DA G+DV+
Sbjct: 496 LAQAFGGVSVAEFSSRYGPGQRKKILKQFE-QGKIQLLISTDATARGIDVQGVELVINYD 554
Query: 71 RAAYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHS 130
Y++TY+HR G ARAG+ G FTLL K Q ++F +++ +A H
Sbjct: 555 APQYLRTYVHRVGRTARAGKTGQAFTLLLK--------VQERKFLQMVSEAGVPELTHHE 606
Query: 131 IPSSSIESLRPIYKSEYVESQANRKRKIGFK 161
IP ++ L Y++ + + K + K
Sbjct: 607 IPRKLLQPLVARYETALSQLEKTVKEEQKLK 637
>sp|A6QRQ7|RRP3_AJECN ATP-dependent rRNA helicase RRP3 OS=Ajellomyces capsulata (strain
NAm1 / WU24) GN=RRP3 PE=3 SV=1
Length = 485
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K IYL+ LL G+ IVF +V + + R G H Q
Sbjct: 284 KYKDIYLVYLLNEYAGQSAIVFTRTVNETQRLAILLRALGFGSIPLHGQLSQSSRLGALS 343
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+LV +D G+D+ + KTYIHR G ARAG++GH F+++
Sbjct: 344 KFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIV 403
Query: 99 PK 100
+
Sbjct: 404 TQ 405
>sp|P26802|DDX51_DROME Probable ATP-dependent RNA helicase Dbp73D OS=Drosophila
melanogaster GN=Dbp73D PE=2 SV=3
Length = 687
Score = 50.1 bits (118), Expect = 7e-06, Method: Composition-based stats.
Identities = 55/205 (26%), Positives = 84/205 (40%), Gaps = 55/205 (26%)
Query: 5 LSPQIC--ESKLKPIYLIPLLRNLGGEKFIVFASSVANSPK---TLKAFRGK-------- 51
L+ Q C E +LKP+ + L+ ++F+ F +S + + LK K
Sbjct: 419 LTEQYCVTELRLKPLTVFALVEKYKWKRFLCFTNSSDQATRLTFVLKVLFQKYSTKVSEL 478
Query: 52 ------------------GHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGP 84
G + L+CSDA+ G+DV E +I TYIHR G
Sbjct: 479 SGNLSAKVRNERLRDFAAGKINGLICSDALARGIDVADVDVVLSYETPRHITTYIHRVGR 538
Query: 85 RARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHD-SCPVHSIPSSSIESLRPIY 143
ARAG+ G T+L + + L FKK+L A+ +H P I+ +
Sbjct: 539 TARAGRKGTAVTVLTEQDMTL--------FKKILSDANKGLGEEIHVSPDIEIQ-----H 585
Query: 144 KSEYVESQAN-RKRKIGFKLSRMVK 167
EY E+ A R K+ K +M +
Sbjct: 586 AVEYKEALAGLRSEKVKNKNQKMAE 610
>sp|Q29S22|DDX47_BOVIN Probable ATP-dependent RNA helicase DDX47 OS=Bos taurus GN=DDX47
PE=2 SV=1
Length = 457
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 249 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 308
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 309 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 368
Query: 98 LPK 100
+ +
Sbjct: 369 VTQ 371
>sp|A3LP87|DBP8_PICST ATP-dependent RNA helicase DBP8 OS=Scheffersomyces stipitis (strain
ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
GN=DBP8 PE=3 SV=2
Length = 445
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 18/144 (12%)
Query: 36 SSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRA 86
S NS + KA G ++L+ +D + G+D+ + +IHR G A
Sbjct: 290 SERTNSVQRFKA----GAARILIATDVASRGLDIPSVELVVNFDIPADPDDFIHRVGRTA 345
Query: 87 RAGQNGHCFTLLP-KDEDKLLYMFQ-VKRFKKLLQQADHDSCPVHSIPSSSI---ESLRP 141
RAG++G T++ KD D++ + + + + +LL++ DS S+ ++S+ ESL
Sbjct: 346 RAGRSGDAVTIIAEKDIDRIASIEERINKKMELLEEVTDDSVITDSLTATSVAKRESLME 405
Query: 142 IYKSEYVESQANRKRKIGFKLSRM 165
+ K + E + ++K G + ++
Sbjct: 406 MDKENFGEKRKINRKKRGLETEKI 429
>sp|Q9H0S4|DDX47_HUMAN Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens GN=DDX47
PE=1 SV=1
Length = 455
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 247 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 306
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 307 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 366
Query: 98 LPK 100
+ +
Sbjct: 367 VTQ 369
>sp|Q9CWX9|DDX47_MOUSE Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus GN=Ddx47
PE=2 SV=2
Length = 455
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ---------- 55
SK K YL+ +L L G F++F S+ N+ +T R G H Q
Sbjct: 247 SKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSL 306
Query: 56 ---------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
+L+ +D + G+D+ + K YIHR G ARAG++G T
Sbjct: 307 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 366
Query: 98 LPK 100
+ +
Sbjct: 367 VTQ 369
>sp|A2QA23|DBP6_ASPNC ATP-dependent RNA helicase dbp6 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=dbp6 PE=3 SV=1
Length = 593
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 10/82 (12%)
Query: 32 IVFASSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVER---------AAYIKTYIHRA 82
I+ ++ + S KTL A+R +G + V++ +D + G+D+ A I TY+HR
Sbjct: 452 IIKSNKSSASRKTLTAYR-RGKISVIIATDRASRGLDLRSLTHVVNYDVPASITTYVHRV 510
Query: 83 GPRARAGQNGHCFTLLPKDEDK 104
G ARAGQ G +TL+ E K
Sbjct: 511 GRTARAGQKGSAWTLVAHREGK 532
>sp|Q1E1N5|RRP3_COCIM ATP-dependent rRNA helicase RRP3 OS=Coccidioides immitis (strain
RS) GN=RRP3 PE=3 SV=1
Length = 474
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 51/126 (40%), Gaps = 34/126 (26%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ------- 55
I K K IYLI LL G+ I+F +V + + R G H Q
Sbjct: 269 IIPHKHKDIYLIYLLNEFPGQSVIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARL 328
Query: 56 ------------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
+LV +D G+D+ + KTYIHR G ARAG++G
Sbjct: 329 GALGKFRSRSRNILVATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRA 388
Query: 95 FTLLPK 100
F+L+ +
Sbjct: 389 FSLVTQ 394
>sp|A7EML8|RRP3_SCLS1 ATP-dependent rRNA helicase rrp3 OS=Sclerotinia sclerotiorum
(strain ATCC 18683 / 1980 / Ss-1) GN=rrp3 PE=3 SV=1
Length = 482
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 36/119 (30%)
Query: 15 KPIYLIPLLRNLGGEKFIVFASSVANSPK--------------------------TLKAF 48
K YLI LL G+ I+F +V + + L F
Sbjct: 283 KDTYLIYLLNEFAGQSAIIFTRTVNETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKF 342
Query: 49 RGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
R G ++LV +D G+D+ + KTYIHR G ARAG++GH + +
Sbjct: 343 RA-GSREILVATDVAARGLDIPSVDVVLNYDMPQDSKTYIHRVGRTARAGKSGHAISFV 400
>sp|A6RW56|RRP3_BOTFB ATP-dependent rRNA helicase rrp3 OS=Botryotinia fuckeliana (strain
B05.10) GN=rrp3 PE=3 SV=1
Length = 486
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 36/119 (30%)
Query: 15 KPIYLIPLLRNLGGEKFIVFASSVANSPK--------------------------TLKAF 48
K YLI LL G+ I+F +V + + L F
Sbjct: 287 KDTYLIYLLNEFAGQSAIIFTRTVNETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKF 346
Query: 49 RGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
R G ++LV +D G+D+ + KTYIHR G ARAG++GH +++
Sbjct: 347 RA-GSREILVATDVAARGLDIPSVDVVLNYDVPQDSKTYIHRVGRTARAGKSGHAISVV 404
>sp|Q76PD3|DBP6_SCHPO ATP-dependent RNA helicase dbp6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dbp6 PE=2 SV=1
Length = 604
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 33 VFASSVA-NSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRA 82
+F SS++ + K + + G + +LVCSD M G+DV + ++Y+HR
Sbjct: 466 LFTSSLSRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRI 525
Query: 83 GPRARAGQNGHCFTLLPKDE 102
G ARAG+ G +TL+ E
Sbjct: 526 GRTARAGREGFAWTLVQSHE 545
>sp|Q0CIQ3|RRP3_ASPTN ATP-dependent rRNA helicase rrp3 OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=rrp3 PE=3 SV=2
Length = 445
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 36/128 (28%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPK--------------------------TLK 46
K K YL+ LL G+ I+F +V + + +L
Sbjct: 251 KFKDFYLVYLLNERAGQMGIIFTRTVHETQRLSIMLRNLGFPAIPIHGQLSQSARLASLN 310
Query: 47 AFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTL 97
FR + +L+ +D G+D+ Y+ KTYIHR G ARAG++G F+
Sbjct: 311 KFRARSR-NLLIATDVAARGLDIPAVDYVLNYDLPQDSKTYIHRVGRTARAGKSGIAFSF 369
Query: 98 LPKDEDKL 105
+ + E +L
Sbjct: 370 VTQYEVEL 377
>sp|P38712|RRP3_YEAST ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RRP3 PE=1 SV=2
Length = 501
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 66/162 (40%), Gaps = 45/162 (27%)
Query: 14 LKPIYLIPLLRNLGGEKFIVFASSVANSPK--------------------------TLKA 47
LK YLI LL G+ I+F + AN+ + +L
Sbjct: 307 LKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDL 366
Query: 48 FRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
F+ G +LV +D G+D+ + K+YIHR G ARAG++G +L+
Sbjct: 367 FKA-GKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLV 425
Query: 99 PKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLR 140
+ + +L+ + KKL P S+ + I +LR
Sbjct: 426 SQYDLELILRIEEVLGKKL---------PKESVDKNIILTLR 458
>sp|Q6H601|RH22_ORYSJ DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sativa subsp.
japonica GN=Os09g0383400 PE=2 SV=2
Length = 577
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 11/71 (15%)
Query: 36 SSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRA 86
SS+ K L++FR G VLVC+DA G+DV E AA ++HR G A
Sbjct: 460 SSLEERAKNLQSFRENG--GVLVCTDAAARGLDVPNVSHVIQAEFAACAVDFLHRVGRTA 517
Query: 87 RAGQNGHCFTL 97
RAGQ+G +L
Sbjct: 518 RAGQSGIVTSL 528
>sp|Q5B5E7|RRP3_EMENI ATP-dependent rRNA helicase rrp3 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=rrp3 PE=3 SV=1
Length = 465
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 71/182 (39%), Gaps = 35/182 (19%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKG------HMQ----------- 55
K K +YL+ LL G+ I+F ++V + + R G H Q
Sbjct: 270 KHKNLYLVYLLNEFAGQSAIIFTTTVHETQRVAFMLRALGFGAIPLHGQLSQSARLGALG 329
Query: 56 --------VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+LV +D G+D+ + KTYIHR G ARAG++G + +
Sbjct: 330 KFRSRSRDILVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFV 389
Query: 99 PKDEDKLLYMFQVKRFKKLLQ-QADHDSCPVHSIPSSSIESLRPIYKSEYVESQANRKRK 157
+ + ++ + KKL + Q + D V S + I + E + R +K
Sbjct: 390 TQYDVEVWLRIEHALSKKLPEYQVEKDEVMVMSERVAEASRQATIEMKSFDEKKGARGKK 449
Query: 158 IG 159
G
Sbjct: 450 FG 451
>sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana
GN=RH53 PE=2 SV=1
Length = 616
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+TL FR GH +LV +D G+DV I +T++HR G RAG+ G
Sbjct: 389 RTLAGFR-DGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGS 447
Query: 94 CFTLLPKDEDKLLYMFQVK---RFKKL 117
+ +D+ + + + + + RF +L
Sbjct: 448 AILIYSQDQSRAVKIIEREVGSRFTEL 474
>sp|Q6C7X8|DBP10_YARLI ATP-dependent RNA helicase DBP10 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=DBP10 PE=3 SV=1
Length = 926
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 9 ICESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKT-LKAFRGKGHMQVLVCSDAMTSGM 67
C +K Y+I LL+ LG ++ + ++ K L FR G +LV +D G+
Sbjct: 398 FCPTKHHVEYVIVLLQTLGYAVSYIYGTLDQHARKNQLYRFR-TGKTSILVVTDVAARGI 456
Query: 68 DVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRF--KK 116
DV A + K +IHR G ARAG G ++++ KD D + Y+ ++ F +K
Sbjct: 457 DVPVLANVINYSLPPSPKVFIHRVGRTARAGNRGWAYSII-KDND-IPYLLDLEVFLGRK 514
Query: 117 LL 118
LL
Sbjct: 515 LL 516
>sp|A7TS37|RRP3_VANPO ATP-dependent rRNA helicase RRP3 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=RRP3 PE=3 SV=1
Length = 506
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 66/162 (40%), Gaps = 45/162 (27%)
Query: 14 LKPIYLIPLLRNLGGEKFIVFASSVANSPK--------------------------TLKA 47
LK YLI L+ G+ IVF + AN+ + +L
Sbjct: 312 LKNTYLIYLMNEFIGKTIIVFTRTKANAERITTLANLLEFSATALHGDLNQNQRTGSLDL 371
Query: 48 FRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
F+ G +LV +D G+D+ + K+YIHR G ARAG++G +L+
Sbjct: 372 FKA-GRRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLV 430
Query: 99 PKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLR 140
+ + +L+ + KKL P ++ +I +LR
Sbjct: 431 SQYDLELILRIEDVLGKKL---------PKENVNKDAILTLR 463
>sp|A5DEZ5|MS116_PICGU ATP-dependent RNA helicase MSS116, mitochondrial OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=MSS116 PE=3 SV=2
Length = 714
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
+T+K FR H VLVC+D G+D +++ YIH+ G ARAG G
Sbjct: 396 RTVKEFRRTSH-GVLVCTDVAARGLDFNDVSHVIQMCPSSSVADYIHKIGRTARAGARGK 454
Query: 94 CFTLLPKDEDKLLYMFQVKR---FKKLLQQADHDSCPVH 129
+ + E K + Q +R FK+ + ++ P H
Sbjct: 455 ARIFISEPEMKFIETLQRERGIVFKEDTEYVKDETSPDH 493
>sp|P34668|YO12_CAEEL Putative ATP-dependent RNA helicase ZK686.2 OS=Caenorhabditis
elegans GN=ZK686.2 PE=3 SV=2
Length = 593
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGH 93
K L+ F K +VL+CSD + G D+ + A K ++HRAG RAGQ+G+
Sbjct: 440 KMLEKF-NKNENRVLICSDVLARGTDLNKVDCVINYNLPADDKLFVHRAGRTGRAGQDGY 498
Query: 94 CFTLLPKDEDKLL 106
++ K+ +L
Sbjct: 499 VISVGDKESKRLF 511
>sp|Q7RY59|RRP3_NEUCR ATP-dependent rRNA helicase rrp-3 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rrp-3 PE=3 SV=1
Length = 515
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 36/119 (30%)
Query: 15 KPIYLIPLLRNLGGEKFIVFASSVANSPK--------------------------TLKAF 48
K YL+ L G+ I+F +V + + L F
Sbjct: 317 KDTYLVYLCNEFAGQTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKF 376
Query: 49 RGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
R G ++LV +D G+D+ + KTY+HR G ARAG++GH +++
Sbjct: 377 RA-GSREILVATDVAARGLDIPNVDCVINHDLPQDSKTYVHRVGRTARAGKSGHAISIV 434
>sp|P34580|DDX47_CAEEL Putative ATP-dependent RNA helicase T26G10.1 OS=Caenorhabditis
elegans GN=T26G10.1 PE=3 SV=1
Length = 489
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 36/124 (29%)
Query: 12 SKLKPIYLIPLLRNLGGEKFIVFASSVANSPK--------------------------TL 45
+K K YL+ LL G IVF ++ A + + +L
Sbjct: 267 NKYKETYLVYLLNEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSL 326
Query: 46 KAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFT 96
F+ K ++LVC+D G+D+ + K Y+HR G ARAG++G T
Sbjct: 327 NKFKSKAR-EILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAIT 385
Query: 97 LLPK 100
++ +
Sbjct: 386 VVTQ 389
>sp|Q96GQ7|DDX27_HUMAN Probable ATP-dependent RNA helicase DDX27 OS=Homo sapiens GN=DDX27
PE=1 SV=2
Length = 796
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 10/73 (13%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAY---------IKTYIHRAGPRARAGQNGH 93
+ L+ F+ + + +LV +D G+D+E IK Y+HR G ARAG+ G
Sbjct: 504 EALRRFKDE-QIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGR 562
Query: 94 CFTLLPKDEDKLL 106
+L+ +DE K+L
Sbjct: 563 SVSLVGEDERKML 575
>sp|Q2H1Q8|RRP3_CHAGB ATP-dependent rRNA helicase RRP3 OS=Chaetomium globosum (strain
ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL
1970) GN=RRP3 PE=3 SV=1
Length = 493
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 36/140 (25%)
Query: 15 KPIYLIPLLRNLGGEKFIVFASSVANSPK--------------------------TLKAF 48
K YLI L G+ I+F +V + + L F
Sbjct: 292 KDTYLIYLCNEFAGQTIIIFTRTVIETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKF 351
Query: 49 RGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLP 99
R G +LV +D G+D+ + KTY+HR G ARAG++GH + +
Sbjct: 352 RA-GSRDILVATDVAARGLDIPNVDCVLNLDLPGDSKTYVHRVGRTARAGRSGHAISFVT 410
Query: 100 KDEDKLLYMFQVKRFKKLLQ 119
+ + +L + KL +
Sbjct: 411 QYDLELWLRIEAALGTKLTE 430
>sp|P0CQ88|PRP28_CRYNJ Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=PRP28 PE=3 SV=1
Length = 738
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGHCF 95
L+A R G + VLV +D G+DV + + I+ Y+HR G RAG+ G
Sbjct: 627 LQALR-DGEISVLVATDLAGRGIDVPDVSLVINWQMSDTIEKYVHRIGRTGRAGKTGVAI 685
Query: 96 TLLPKDEDKLLYMFQVK 112
T L D+D+++Y +++
Sbjct: 686 TFLTNDDDEVMYDLRIE 702
>sp|P0CQ89|PRP28_CRYNB Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=PRP28 PE=3 SV=1
Length = 738
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGHCF 95
L+A R G + VLV +D G+DV + + I+ Y+HR G RAG+ G
Sbjct: 627 LQALR-DGEISVLVATDLAGRGIDVPDVSLVINWQMSDTIEKYVHRIGRTGRAGKTGVAI 685
Query: 96 TLLPKDEDKLLYMFQVK 112
T L D+D+++Y +++
Sbjct: 686 TFLTNDDDEVMYDLRIE 702
>sp|Q54VT4|DDX47_DICDI Probable ATP-dependent RNA helicase ddx47 OS=Dictyostelium
discoideum GN=ddx47 PE=3 SV=1
Length = 546
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 34/122 (27%)
Query: 13 KLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRG---------------------- 50
K K YL +L L G I+F S+ A+S K R
Sbjct: 343 KYKDCYLAYILNELAGNLTIIFTSTCASSTKIAMMLRNLGFGAIPINGDMDQGKRLASLN 402
Query: 51 ---KGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL 98
+G +LV +D G+D+ + K Y+HR G ARAG +G T++
Sbjct: 403 KFKQGTKSILVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIV 462
Query: 99 PK 100
+
Sbjct: 463 TQ 464
>sp|Q59ZH9|MAK5_CANAL ATP-dependent RNA helicase MAK5 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=MAK5 PE=3 SV=1
Length = 782
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 19 LIPLLRNLGGEKFIVFASSVANSP-KTLKAFRG---KGHMQVLVCSDAMTSGMDVERAAY 74
L+PLL NL F + +S + + L+ F+ K + VLV SD G+D+ +
Sbjct: 503 LVPLLNNLNIPAFSIHSSMIQKQRLRALEKFKEASQKNEVAVLVASDVAARGLDIPNIDH 562
Query: 75 I---------KTYIHRAGPRARAGQNG 92
+ YIHR+G ARAG+ G
Sbjct: 563 VVHYHLPRSADVYIHRSGRTARAGKEG 589
>sp|Q6C024|PRP28_YARLI Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PRP28 PE=3 SV=1
Length = 575
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Query: 51 KGHMQVLVCSDAMTSGMDV---------ERAAYIKTYIHRAGPRARAGQNGHCFTLLPKD 101
+G + VLV +D G+D+ + A I++Y HR G RAG+ G T L ++
Sbjct: 479 RGAVDVLVATDVAGRGLDIPNVSLVVNFQMANNIESYTHRIGRTGRAGKRGTAVTFLGQE 538
Query: 102 EDKLLY 107
+D +L+
Sbjct: 539 DDDVLF 544
>sp|Q9BQ39|DDX50_HUMAN ATP-dependent RNA helicase DDX50 OS=Homo sapiens GN=DDX50 PE=1 SV=1
Length = 737
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
TLK FR +G +VLV ++ G+D+ + ++YIHR+G RAG+ G C
Sbjct: 430 TLKGFR-EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGIC 488
Query: 95 FTLL-PKDEDKLLYMFQ 110
P++ +L Y+ Q
Sbjct: 489 ICFYQPRERGQLRYVEQ 505
>sp|Q54BD6|DDX51_DICDI Probable ATP-dependent RNA helicase ddx51 OS=Dictyostelium
discoideum GN=ddx51 PE=3 SV=1
Length = 563
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 10/73 (13%)
Query: 53 HMQVLVCSDAMTSGMDVE---------RAAYIKTYIHRAGPRARAGQNGHCFTLLPKDED 103
+ +L+CSD M+ GMD++ I Y+HR G ARAG G +T++ K E
Sbjct: 382 QIDILICSDIMSRGMDIQDIDVVINYNTPPNITLYVHRVGRTARAGNFGVSYTIVDKSEI 441
Query: 104 KLLYMFQVKRFKK 116
K Y+ +K+ ++
Sbjct: 442 K-YYISMMKKAER 453
>sp|Q89AF9|DEAD_BUCBP Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=deaD PE=3 SV=1
Length = 602
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 52 GHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDE 102
G + +L+ +D G+DV+R +++ ++Y+HR G RAG+ G + E
Sbjct: 293 GRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRKGKALLFVENRE 352
Query: 103 DKLL 106
+LL
Sbjct: 353 RRLL 356
>sp|Q8K9H6|DEAD_BUCAP Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=deaD PE=3 SV=1
Length = 601
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 52 GHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDE 102
G + +L+ +D G+DV+R +++ ++Y+HR G RAG+ G + E
Sbjct: 293 GRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 352
Query: 103 DKLL 106
+LL
Sbjct: 353 RRLL 356
>sp|Q99MJ9|DDX50_MOUSE ATP-dependent RNA helicase DDX50 OS=Mus musculus GN=Ddx50 PE=2 SV=1
Length = 734
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHC 94
TLK FR +G +VLV ++ G+D+ + ++YIHR+G RAG+ G C
Sbjct: 427 TLKGFR-EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGIC 485
Query: 95 FTLL-PKDEDKLLYMFQ 110
P++ +L Y+ Q
Sbjct: 486 VCFYQPRERGQLRYVEQ 502
>sp|Q6BQ61|RRP3_DEBHA ATP-dependent rRNA helicase RRP3 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=RRP3 PE=3 SV=2
Length = 477
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 42/166 (25%)
Query: 15 KPIYLIPLLRNLGGEKFIVFASSVANSPKT--------------------------LKAF 48
K YLI LL G+ I+F + A+S +T L F
Sbjct: 291 KNTYLIHLLNEFLGKSIIIFTRTCAHSQRTALLARILGFSAVPLHGQLTQAQRLGSLNKF 350
Query: 49 RGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLP 99
+ G +L+ +D G+D+ + K YIHR G ARAG++G +L+
Sbjct: 351 KA-GKANILIATDVAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGKSGKSISLIT 409
Query: 100 KDEDKLLYMFQVKRFKKLLQ-----QADHDSCPVHSIPSSSIESLR 140
+ + ++ + KKL + +A D+ VH + +S E++R
Sbjct: 410 QYDLEMYLRIESVLGKKLPKDPSPSKAVLDTLHVH-VDRASAEAIR 454
>sp|Q9LUW6|RH9_ARATH DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana
GN=RH9 PE=2 SV=1
Length = 610
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 37 SVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRAR 87
S A +TL FR G+ +LV +D G+DV + +T++HR G R
Sbjct: 395 SQAQRERTLAGFR-DGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGR 453
Query: 88 AGQNGHCFTLLPKDEDKLLYMFQVK---RFKKL 117
AG+ G + +D+ + + M + + RF +L
Sbjct: 454 AGKKGSAILIHGQDQTRAVKMIEKEVGSRFNEL 486
>sp|Q761Z9|RH18_ORYSJ DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa subsp.
japonica GN=Os01g0164500 PE=1 SV=2
Length = 647
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 13/102 (12%)
Query: 19 LIPLLRNLGGEKFIVFASSVANSP--KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYIK 76
++PLL +L G I + + P K L +F +LVC+D G+D+ I
Sbjct: 303 VLPLLDSLKGSPIIPYHGKMKQGPREKALASFSALSS-GILVCTDVAARGLDIPHVDLIV 361
Query: 77 TY---------IHRAGPRARAGQNGHCFT-LLPKDEDKLLYM 108
Y IHRAG AR Q G LLPK++ + ++
Sbjct: 362 QYDPPQDPNVFIHRAGRTARYDQEGDAIVFLLPKEDTYVEFL 403
>sp|Q59PR3|DBP8_CANAL ATP-dependent RNA helicase DBP8 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=DBP8 PE=3 SV=1
Length = 440
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 14/123 (11%)
Query: 52 GHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLL-PKD 101
G ++L+ +D + G+D+ + +IHR G ARAG+ G +++ KD
Sbjct: 302 GAARILIATDVASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKGDAVSIIGEKD 361
Query: 102 EDKLLYMFQ-VKRFKKLLQQADHDSCPVHSIPSSSI---ESLRPIYKSEYVESQANRKRK 157
D++ + + + + +LL+ + D+ S+ ++S+ ESL + K + E + ++K
Sbjct: 362 IDRIQSIEERINKKMELLEDVNDDNVIKESLSATSVAKRESLMEMDKENFGERKKINRKK 421
Query: 158 IGF 160
G
Sbjct: 422 HGL 424
>sp|Q5ANB2|DBP10_CANAL ATP-dependent RNA helicase DBP10 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=DBP10 PE=3 SV=1
Length = 908
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 18 YLIPLLRNLGGEKFIVFASSVANSPKT-LKAFRGKGHMQVLVCSDAMTSGMDVERAAYI- 75
Y+ LLR+ G ++ + ++ K L FR G VLV +D G+D+ A +
Sbjct: 409 YVTKLLRDAGYLVSYIYGTLDQHARKNQLYQFRV-GLTNVLVVTDVAARGIDIPVLANVI 467
Query: 76 --------KTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRF--KKLLQQADHDS 125
K +IHR G ARAG G ++++ +E +L Y+ ++ F KK+L + H+
Sbjct: 468 NFTLPASSKIFIHRVGRTARAGNKGWAYSIV--NEKELPYLLDLELFLGKKILLTSMHE- 524
Query: 126 CPVHSIPSSSIESLRP 141
V + SS + P
Sbjct: 525 AKVEMLKKSSTGTFIP 540
>sp|P57453|DEAD_BUCAI Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=deaD PE=3 SV=1
Length = 601
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 52 GHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDE 102
G + +L+ +D G+DV+R +++ ++Y+HR G RAG+ G + E
Sbjct: 293 GRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 352
Query: 103 DKLL 106
+LL
Sbjct: 353 RRLL 356
>sp|Q6CIR0|DBP10_KLULA ATP-dependent RNA helicase DBP10 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DBP10 PE=3 SV=1
Length = 973
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 16/124 (12%)
Query: 18 YLIPLLRNLGG-EKFIVFASSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI- 75
Y+ LL+N G +I A + + L FR G +LV +D G+D+ A +
Sbjct: 433 YVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRA-GLTSILVVTDVAARGVDIPLLANVI 491
Query: 76 --------KTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRF---KKLLQQADHD 124
K +IHR G ARAG G F+++ E++L Y+ ++ F K LL
Sbjct: 492 NYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS--ENELPYLLDLELFLGKKILLTPMYES 549
Query: 125 SCPV 128
SC +
Sbjct: 550 SCQI 553
>sp|Q5A9Z6|FAL1_CANAL ATP-dependent RNA helicase FAL1 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=FAL1 PE=3 SV=1
Length = 399
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 17/123 (13%)
Query: 1 MSVNLSPQICESKLKPIYLIPLLRNLGGEKFIVFAS----SVANSPKTLKAFRGKGHMQV 56
+++ + C +KLK +L ++ + F V A + FR +G+ +V
Sbjct: 263 LTITQAVIFCNTKLKVNWLADQMKK---QNFTVVAMHGDMKQDERDSIMNDFR-RGNSRV 318
Query: 57 LVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDEDKLLY 107
L+ +D G+DV++ + + + YIHR G R G+ G L+ KD+ L
Sbjct: 319 LISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITKDDVVTLK 378
Query: 108 MFQ 110
F+
Sbjct: 379 EFE 381
>sp|Q6BJX6|DHH1_DEBHA ATP-dependent RNA helicase DHH1 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DHH1 PE=3 SV=2
Length = 516
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 31/136 (22%)
Query: 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGH 93
K FR +G ++VLVCSD +T G+D++ + +TY+HR G R G G
Sbjct: 308 KVFHEFR-QGKVRVLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGL 366
Query: 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIESLRPIYKSEYV-ESQA 152
L+ ++ LY K+ Q+ + P IP++ I KS YV E++A
Sbjct: 367 AINLMSWNDRYNLY--------KIEQELGTEIKP---IPAT-------IDKSLYVAENEA 408
Query: 153 NRKRKIGFKLSRMVKG 168
R FK+ ++ KG
Sbjct: 409 AVPRP--FKIDQLPKG 422
>sp|Q9VHU1|DDX55_DROME Probable ATP-dependent RNA helicase DDX55 homolog OS=Drosophila
melanogaster GN=CG9630 PE=2 SV=1
Length = 613
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 56 VLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCFTLLPKDEDKLL 106
VL+C+D + G+DV ++ +++HR G AR G G+ L ED +
Sbjct: 320 VLLCTDVLARGLDVPEIEWVVQWDPPSTASSFVHRVGRTARQGNEGNALVFLLPSEDAYV 379
Query: 107 YMFQVKR---FKKLLQQADHDS 125
+ ++ + KLL + D+
Sbjct: 380 HFLKINQKVELTKLLTEEAEDA 401
>sp|P35683|IF4A1_ORYSJ Eukaryotic initiation factor 4A-1 OS=Oryza sativa subsp. japonica
GN=Os06g0701100 PE=2 SV=2
Length = 414
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 12/83 (14%)
Query: 45 LKAFRGKGHMQVLVCSDAMTSGMDVERAAYI---------KTYIHRAGPRARAGQNGHCF 95
++ FR G +VL+ +D + G+DV++ + + + Y+HR G R G+ G
Sbjct: 323 MREFR-SGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAI 381
Query: 96 TLLPKDEDKLLYMFQVKRFKKLL 118
+ +D++++L F ++RF ++
Sbjct: 382 NFVTRDDERML--FDIQRFYNVV 402
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,896,703
Number of Sequences: 539616
Number of extensions: 2182349
Number of successful extensions: 6222
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 774
Number of HSP's that attempted gapping in prelim test: 5663
Number of HSP's gapped (non-prelim): 1008
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)