Query 048509
Match_columns 168
No_of_seqs 179 out of 1421
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 10:09:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048509.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048509hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 4.1E-28 8.8E-33 201.1 12.6 133 3-145 275-442 (476)
2 KOG0333 U5 snRNP-like RNA heli 99.9 2.5E-26 5.4E-31 196.2 11.7 123 3-136 492-649 (673)
3 KOG0331 ATP-dependent RNA heli 99.9 1E-26 2.3E-31 200.6 9.5 126 2-139 312-475 (519)
4 KOG0336 ATP-dependent RNA heli 99.9 1.2E-25 2.5E-30 188.0 12.7 130 2-144 438-603 (629)
5 KOG0340 ATP-dependent RNA heli 99.9 5.1E-26 1.1E-30 186.9 9.1 121 2-132 225-383 (442)
6 COG0513 SrmB Superfamily II DN 99.9 2.2E-25 4.7E-30 195.0 11.9 113 2-123 246-395 (513)
7 KOG0328 Predicted ATP-dependen 99.9 2.3E-25 4.9E-30 178.9 8.9 113 2-123 239-387 (400)
8 KOG0342 ATP-dependent RNA heli 99.9 1.6E-24 3.5E-29 183.8 11.7 128 2-142 303-466 (543)
9 PRK04837 ATP-dependent RNA hel 99.9 3.3E-24 7.1E-29 183.2 11.2 124 3-136 230-388 (423)
10 KOG0332 ATP-dependent RNA heli 99.9 3.5E-24 7.5E-29 177.2 10.3 114 2-123 303-458 (477)
11 KOG0345 ATP-dependent RNA heli 99.9 6.1E-24 1.3E-28 179.6 10.7 103 2-105 229-368 (567)
12 KOG0326 ATP-dependent RNA heli 99.9 9E-24 2E-28 172.1 9.2 124 1-136 295-453 (459)
13 PTZ00110 helicase; Provisional 99.9 6E-23 1.3E-27 180.8 13.4 125 2-138 349-510 (545)
14 KOG0350 DEAD-box ATP-dependent 99.9 2.8E-23 6E-28 176.8 10.7 130 2-140 403-572 (620)
15 KOG0343 RNA Helicase [RNA proc 99.9 6.2E-23 1.3E-27 176.5 10.4 134 2-145 287-457 (758)
16 KOG0338 ATP-dependent RNA heli 99.9 4E-23 8.6E-28 176.3 9.1 134 3-145 398-571 (691)
17 PLN00206 DEAD-box ATP-dependen 99.9 2E-22 4.4E-27 176.5 13.8 123 3-137 340-500 (518)
18 KOG0335 ATP-dependent RNA heli 99.9 1.7E-22 3.8E-27 172.4 12.5 124 2-137 302-469 (482)
19 PRK11776 ATP-dependent RNA hel 99.9 1.8E-22 4E-27 174.1 12.2 112 3-123 217-363 (460)
20 PRK11192 ATP-dependent RNA hel 99.9 3E-22 6.5E-27 171.5 12.0 111 3-122 219-365 (434)
21 PRK04537 ATP-dependent RNA hel 99.9 3.5E-22 7.5E-27 176.9 12.3 124 3-136 232-390 (572)
22 PRK10590 ATP-dependent RNA hel 99.9 3.6E-22 7.7E-27 172.4 11.7 112 3-123 220-366 (456)
23 KOG0347 RNA helicase [RNA proc 99.9 3.4E-23 7.4E-28 177.9 2.7 131 5-145 441-607 (731)
24 PRK11634 ATP-dependent RNA hel 99.9 1.3E-21 2.9E-26 174.6 12.7 120 3-132 220-374 (629)
25 PRK01297 ATP-dependent RNA hel 99.9 5.6E-21 1.2E-25 165.6 13.3 112 3-123 310-456 (475)
26 KOG0346 RNA helicase [RNA proc 99.9 3.9E-21 8.4E-26 161.8 11.3 138 2-145 241-453 (569)
27 KOG0341 DEAD-box protein abstr 99.8 1.2E-21 2.7E-26 163.1 6.3 123 5-139 399-556 (610)
28 KOG0348 ATP-dependent RNA heli 99.8 1.4E-20 3.1E-25 161.4 8.9 103 2-105 395-558 (708)
29 KOG0344 ATP-dependent RNA heli 99.8 2.9E-20 6.2E-25 160.6 8.8 103 2-105 360-499 (593)
30 PTZ00424 helicase 45; Provisio 99.8 8.5E-20 1.8E-24 154.3 11.1 112 3-123 241-388 (401)
31 KOG0339 ATP-dependent RNA heli 99.8 8E-20 1.7E-24 156.2 10.8 127 3-141 441-604 (731)
32 KOG0327 Translation initiation 99.8 7.6E-20 1.6E-24 151.6 8.7 121 2-136 239-394 (397)
33 KOG0334 RNA helicase [RNA proc 99.8 4E-19 8.6E-24 161.4 12.7 131 2-145 585-752 (997)
34 PRK11057 ATP-dependent DNA hel 99.8 2.7E-18 5.9E-23 153.1 10.7 97 6-103 214-345 (607)
35 TIGR00614 recQ_fam ATP-depende 99.8 5.3E-18 1.1E-22 147.1 11.3 88 14-102 211-334 (470)
36 KOG4284 DEAD box protein [Tran 99.7 9E-18 2E-22 147.0 7.9 101 1-102 237-380 (980)
37 TIGR03817 DECH_helic helicase/ 99.7 1.9E-17 4.1E-22 150.5 10.1 85 14-101 259-386 (742)
38 PLN03137 ATP-dependent DNA hel 99.7 2.9E-17 6.3E-22 152.2 11.0 96 6-102 656-788 (1195)
39 PRK12898 secA preprotein trans 99.7 4.7E-17 1E-21 145.0 11.6 99 5-104 448-589 (656)
40 TIGR01389 recQ ATP-dependent D 99.7 4.1E-17 8.9E-22 145.0 10.9 98 5-103 201-333 (591)
41 COG1111 MPH1 ERCC4-like helica 99.7 3.5E-16 7.7E-21 133.9 11.6 94 12-107 346-487 (542)
42 PRK09200 preprotein translocas 99.6 1.6E-15 3.5E-20 137.7 10.8 114 7-122 405-561 (790)
43 KOG0337 ATP-dependent RNA heli 99.6 3.9E-16 8.5E-21 131.2 5.1 102 3-105 235-372 (529)
44 KOG0349 Putative DEAD-box RNA 99.6 5.5E-16 1.2E-20 131.1 5.0 84 23-107 500-621 (725)
45 PRK12900 secA preprotein trans 99.6 4.8E-15 1E-19 135.7 11.1 114 8-123 576-732 (1025)
46 KOG0329 ATP-dependent RNA heli 99.6 1.4E-16 2.9E-21 127.2 0.4 92 2-103 257-357 (387)
47 TIGR03714 secA2 accessory Sec 99.6 1.4E-14 2.9E-19 130.9 11.9 115 7-123 401-558 (762)
48 PHA02653 RNA helicase NPH-II; 99.6 2.7E-14 5.8E-19 128.4 12.4 75 28-104 395-517 (675)
49 TIGR00963 secA preprotein tran 99.6 3.3E-14 7.1E-19 128.0 12.3 114 8-123 383-538 (745)
50 PRK13767 ATP-dependent helicas 99.6 3.2E-14 7E-19 131.6 12.0 72 28-100 284-397 (876)
51 TIGR01587 cas3_core CRISPR-ass 99.6 1.6E-14 3.5E-19 120.6 8.9 87 13-100 206-335 (358)
52 PRK04914 ATP-dependent helicas 99.5 4.9E-14 1.1E-18 130.5 12.1 91 11-102 476-604 (956)
53 PRK10689 transcription-repair 99.5 4.2E-14 9.1E-19 133.3 11.7 72 28-100 809-918 (1147)
54 PRK05298 excinuclease ABC subu 99.5 9.3E-14 2E-18 125.0 13.3 128 12-144 428-598 (652)
55 KOG0354 DEAD-box like helicase 99.5 5.7E-14 1.2E-18 125.6 9.7 88 12-102 393-530 (746)
56 PRK10917 ATP-dependent DNA hel 99.5 6.1E-14 1.3E-18 126.7 9.9 57 42-99 521-587 (681)
57 TIGR02621 cas3_GSU0051 CRISPR- 99.5 5.6E-14 1.2E-18 128.1 9.0 93 7-100 248-390 (844)
58 TIGR00580 mfd transcription-re 99.5 1.9E-13 4.2E-18 126.6 12.6 74 27-101 659-770 (926)
59 cd00079 HELICc Helicase superf 99.5 1.5E-13 3.3E-18 97.9 8.9 93 3-97 2-131 (131)
60 TIGR00643 recG ATP-dependent D 99.5 1.3E-13 2.8E-18 123.6 9.8 57 42-99 498-564 (630)
61 TIGR00631 uvrb excinuclease AB 99.5 2.2E-13 4.8E-18 122.4 10.2 91 12-104 424-556 (655)
62 TIGR01970 DEAH_box_HrpB ATP-de 99.5 1.3E-13 2.7E-18 126.5 7.7 97 3-102 180-337 (819)
63 PRK12906 secA preprotein trans 99.5 1.6E-13 3.5E-18 124.4 8.0 97 8-105 418-557 (796)
64 PRK11664 ATP-dependent RNA hel 99.4 1.1E-13 2.3E-18 127.0 6.4 97 3-102 183-340 (812)
65 COG0514 RecQ Superfamily II DN 99.4 8.5E-13 1.8E-17 116.4 9.4 79 26-105 228-341 (590)
66 TIGR00603 rad25 DNA repair hel 99.4 1.8E-12 3.9E-17 117.1 10.7 101 12-113 478-619 (732)
67 PRK02362 ski2-like helicase; P 99.4 2.4E-12 5.3E-17 117.2 11.0 60 42-102 319-398 (737)
68 PRK13766 Hef nuclease; Provisi 99.4 5.7E-12 1.2E-16 115.2 12.2 90 11-102 344-480 (773)
69 TIGR03158 cas3_cyano CRISPR-as 99.4 1.7E-12 3.7E-17 109.2 7.2 83 3-86 241-357 (357)
70 PRK09751 putative ATP-dependen 99.4 3.9E-12 8.4E-17 121.8 10.4 93 44-143 319-420 (1490)
71 PF00271 Helicase_C: Helicase 99.3 6.3E-12 1.4E-16 83.0 6.4 47 42-89 23-78 (78)
72 PRK00254 ski2-like helicase; P 99.3 1.8E-11 3.8E-16 111.4 11.0 60 42-102 311-389 (720)
73 PRK01172 ski2-like helicase; P 99.2 2.4E-11 5.1E-16 109.8 9.0 60 42-102 301-379 (674)
74 PRK11131 ATP-dependent RNA hel 99.2 2.5E-11 5.4E-16 114.9 8.3 76 26-102 284-412 (1294)
75 COG1200 RecG RecG-like helicas 99.2 1.6E-10 3.5E-15 102.6 10.0 86 42-132 523-618 (677)
76 TIGR00595 priA primosomal prot 99.2 1.5E-10 3.2E-15 101.6 9.6 57 42-99 302-379 (505)
77 PHA02558 uvsW UvsW helicase; P 99.2 7.6E-11 1.7E-15 103.3 7.2 83 15-98 329-449 (501)
78 COG1201 Lhr Lhr-like helicases 99.2 2.6E-10 5.7E-15 103.9 10.8 121 15-145 242-399 (814)
79 PRK09401 reverse gyrase; Revie 99.1 2.1E-10 4.6E-15 108.8 7.8 82 2-87 305-430 (1176)
80 PRK12904 preprotein translocas 99.1 6.6E-10 1.4E-14 101.6 10.7 114 8-123 408-594 (830)
81 KOG0351 ATP-dependent DNA heli 99.1 6E-10 1.3E-14 103.2 10.3 107 6-121 460-604 (941)
82 PRK14701 reverse gyrase; Provi 99.1 1.2E-10 2.6E-15 113.0 5.5 98 2-102 306-457 (1638)
83 TIGR01054 rgy reverse gyrase. 99.1 1.4E-09 3.1E-14 103.3 12.0 66 2-71 303-397 (1171)
84 TIGR01967 DEAH_box_HrpA ATP-de 99.1 4.9E-10 1.1E-14 106.4 8.3 87 15-103 263-406 (1283)
85 COG1202 Superfamily II helicas 99.0 6.2E-10 1.3E-14 97.4 8.0 97 5-102 408-554 (830)
86 smart00490 HELICc helicase sup 99.0 1.9E-09 4.1E-14 70.4 6.7 69 19-89 3-82 (82)
87 PRK05580 primosome assembly pr 99.0 2.4E-09 5.1E-14 97.1 8.6 87 15-102 438-550 (679)
88 KOG0352 ATP-dependent DNA heli 98.9 4.9E-09 1.1E-13 89.3 8.7 89 29-118 256-379 (641)
89 PRK13104 secA preprotein trans 98.9 6.1E-09 1.3E-13 95.7 9.5 112 8-123 422-608 (896)
90 COG1197 Mfd Transcription-repa 98.9 1.9E-08 4E-13 94.0 11.6 97 5-102 805-914 (1139)
91 PRK09694 helicase Cas3; Provis 98.8 7.1E-09 1.5E-13 96.0 7.5 73 17-90 548-664 (878)
92 PRK13107 preprotein translocas 98.8 2.6E-08 5.5E-13 91.6 8.6 112 8-123 427-612 (908)
93 COG4098 comFA Superfamily II D 98.7 1.5E-07 3.2E-12 78.4 10.6 80 18-98 293-413 (441)
94 COG1061 SSL2 DNA or RNA helica 98.7 4.9E-08 1.1E-12 84.5 8.3 75 12-87 266-375 (442)
95 COG1204 Superfamily II helicas 98.7 1.1E-07 2.4E-12 87.1 10.3 60 42-102 330-409 (766)
96 PRK11448 hsdR type I restricti 98.7 6.5E-08 1.4E-12 91.8 8.6 62 27-89 697-801 (1123)
97 KOG0950 DNA polymerase theta/e 98.6 8.5E-08 1.8E-12 87.9 7.9 61 42-103 537-613 (1008)
98 COG1198 PriA Primosomal protei 98.5 3.6E-07 7.9E-12 83.0 8.1 60 42-102 524-604 (730)
99 KOG0947 Cytoplasmic exosomal R 98.4 2.3E-06 5.1E-11 78.8 9.3 59 42-101 645-723 (1248)
100 KOG0951 RNA helicase BRR2, DEA 98.3 5.1E-06 1.1E-10 78.4 10.0 60 42-102 623-703 (1674)
101 KOG0948 Nuclear exosomal RNA h 98.3 9.6E-07 2.1E-11 79.7 4.9 60 42-102 461-540 (1041)
102 KOG0353 ATP-dependent DNA heli 98.2 3.8E-06 8.2E-11 71.1 6.4 88 14-102 302-468 (695)
103 COG1203 CRISPR-associated heli 98.2 4.8E-06 1E-10 76.3 7.6 62 42-104 484-553 (733)
104 KOG0952 DNA/RNA helicase MER3/ 98.1 1.9E-05 4.1E-10 73.6 10.3 70 42-120 412-502 (1230)
105 COG1205 Distinct helicase fami 98.1 1.5E-05 3.3E-10 74.1 9.8 88 14-102 290-423 (851)
106 COG0556 UvrB Helicase subunit 98.0 2.6E-05 5.6E-10 68.4 8.6 74 27-102 445-558 (663)
107 PRK12903 secA preprotein trans 98.0 4.3E-05 9.4E-10 70.5 9.1 115 8-123 404-561 (925)
108 KOG4150 Predicted ATP-dependen 97.8 5.6E-05 1.2E-09 67.0 6.9 71 28-99 525-638 (1034)
109 PRK12326 preprotein translocas 97.7 6.7E-05 1.4E-09 68.3 6.3 96 8-103 405-549 (764)
110 PRK12899 secA preprotein trans 97.7 0.00049 1.1E-08 64.3 11.4 111 8-122 546-701 (970)
111 PLN03142 Probable chromatin-re 97.7 9E-05 1.9E-09 70.1 6.6 90 12-102 469-600 (1033)
112 PRK13103 secA preprotein trans 97.7 0.00032 7E-09 65.2 9.9 113 8-122 427-611 (913)
113 PRK12901 secA preprotein trans 97.6 0.0012 2.5E-08 62.3 11.8 115 8-123 606-762 (1112)
114 COG1110 Reverse gyrase [DNA re 97.6 0.00044 9.5E-09 64.7 9.0 57 14-72 322-406 (1187)
115 TIGR01407 dinG_rel DnaQ family 97.5 0.0003 6.6E-09 65.6 7.8 45 27-72 673-744 (850)
116 KOG0953 Mitochondrial RNA heli 97.4 0.00083 1.8E-08 59.4 8.7 56 42-98 397-474 (700)
117 COG4581 Superfamily II RNA hel 97.4 0.00039 8.4E-09 65.5 6.7 60 42-102 460-538 (1041)
118 PF13307 Helicase_C_2: Helicas 97.1 0.0013 2.8E-08 49.6 5.6 64 8-72 14-80 (167)
119 KOG0926 DEAH-box RNA helicase 97.0 0.0012 2.5E-08 60.8 5.7 85 51-136 628-748 (1172)
120 KOG0949 Predicted helicase, DE 96.9 0.0013 2.8E-08 61.5 5.1 55 47-102 983-1049(1330)
121 COG1643 HrpA HrpA-like helicas 96.8 0.0024 5.3E-08 59.4 5.6 75 27-102 258-388 (845)
122 KOG0920 ATP-dependent RNA heli 96.6 0.0017 3.8E-08 60.6 3.1 59 42-102 460-545 (924)
123 COG4096 HsdR Type I site-speci 96.5 0.0052 1.1E-07 56.6 5.9 71 17-88 411-525 (875)
124 KOG0923 mRNA splicing factor A 96.4 0.0053 1.2E-07 55.5 5.3 56 42-99 522-604 (902)
125 CHL00122 secA preprotein trans 96.4 0.035 7.7E-07 51.8 10.5 43 80-123 610-652 (870)
126 TIGR00348 hsdR type I site-spe 96.3 0.014 3E-07 53.3 7.6 56 43-99 581-649 (667)
127 KOG0924 mRNA splicing factor A 96.0 0.011 2.3E-07 53.9 4.8 57 42-100 613-696 (1042)
128 PRK14873 primosome assembly pr 96.0 0.022 4.7E-07 52.1 6.8 59 42-102 462-540 (665)
129 KOG0922 DEAH-box RNA helicase 95.7 0.017 3.6E-07 52.1 4.7 51 51-102 314-391 (674)
130 COG1199 DinG Rad3-related DNA 95.6 0.077 1.7E-06 48.1 8.8 44 28-72 479-547 (654)
131 PRK12902 secA preprotein trans 95.3 0.14 3E-06 48.1 9.5 43 80-123 667-709 (939)
132 smart00492 HELICc3 helicase su 95.1 0.13 2.7E-06 37.9 7.2 41 31-72 24-67 (141)
133 KOG1123 RNA polymerase II tran 95.1 0.12 2.6E-06 45.9 7.9 100 9-108 522-660 (776)
134 PRK08074 bifunctional ATP-depe 94.8 0.11 2.4E-06 49.3 7.6 30 42-72 794-823 (928)
135 PRK11747 dinG ATP-dependent DN 94.1 0.21 4.5E-06 46.0 7.6 45 28-72 534-604 (697)
136 PRK07246 bifunctional ATP-depe 94.0 0.24 5.2E-06 46.5 7.8 44 27-71 646-712 (820)
137 TIGR00596 rad1 DNA repair prot 93.8 0.45 9.8E-06 44.6 9.2 32 10-41 266-308 (814)
138 COG0653 SecA Preprotein transl 93.7 0.07 1.5E-06 49.6 3.7 91 11-102 410-546 (822)
139 KOG0392 SNF2 family DNA-depend 93.7 0.21 4.6E-06 48.3 6.8 90 12-102 1308-1455(1549)
140 PF13871 Helicase_C_4: Helicas 93.6 0.35 7.7E-06 39.7 7.2 57 42-99 51-125 (278)
141 smart00491 HELICc2 helicase su 93.3 0.43 9.3E-06 35.1 6.8 55 17-72 5-68 (142)
142 TIGR02562 cas3_yersinia CRISPR 92.1 0.13 2.8E-06 49.2 3.1 39 52-90 837-881 (1110)
143 KOG0391 SNF2 family DNA-depend 90.1 0.75 1.6E-05 44.8 6.0 85 14-102 1260-1388(1958)
144 TIGR00604 rad3 DNA repair heli 87.5 2.6 5.7E-05 38.8 7.7 30 42-72 568-603 (705)
145 KOG0387 Transcription-coupled 85.0 2 4.3E-05 40.1 5.4 88 12-100 528-657 (923)
146 KOG0925 mRNA splicing factor A 84.7 0.8 1.7E-05 40.7 2.7 47 54-101 314-387 (699)
147 COG4889 Predicted helicase [Ge 80.9 1.1 2.4E-05 42.6 2.2 52 47-99 523-586 (1518)
148 KOG0389 SNF2 family DNA-depend 80.8 6.5 0.00014 36.9 7.0 87 12-102 759-889 (941)
149 KOG0701 dsRNA-specific nucleas 80.4 0.73 1.6E-05 45.9 0.9 46 42-88 344-398 (1606)
150 TIGR03117 cas_csf4 CRISPR-asso 80.3 13 0.00027 34.2 8.7 51 17-69 460-538 (636)
151 PF10593 Z1: Z1 domain; Inter 79.0 5.3 0.00012 31.9 5.4 70 30-102 111-194 (239)
152 KOG0385 Chromatin remodeling c 76.9 3.3 7.2E-05 38.7 3.9 90 12-102 469-600 (971)
153 KOG0384 Chromodomain-helicase 76.0 2.2 4.8E-05 41.6 2.7 89 14-102 683-812 (1373)
154 PF02399 Herpes_ori_bp: Origin 66.7 12 0.00025 35.3 5.1 50 52-102 325-389 (824)
155 COG0553 HepA Superfamily II DN 65.3 23 0.00051 32.7 6.9 88 14-102 692-823 (866)
156 PRK09401 reverse gyrase; Revie 63.9 8.9 0.00019 37.7 4.0 30 73-102 517-550 (1176)
157 KOG0951 RNA helicase BRR2, DEA 63.6 32 0.00069 34.4 7.4 57 42-102 1420-1495(1674)
158 KOG0390 DNA repair protein, SN 60.7 14 0.0003 34.7 4.4 57 42-99 635-705 (776)
159 KOG1000 Chromatin remodeling p 56.6 93 0.002 28.2 8.5 72 14-85 472-591 (689)
160 PF06862 DUF1253: Protein of u 50.7 1.8E+02 0.0038 25.7 10.4 73 27-102 299-416 (442)
161 KOG0339 ATP-dependent RNA heli 48.9 2.1E+02 0.0046 26.1 9.7 96 5-102 371-479 (731)
162 PRK14701 reverse gyrase; Provi 46.3 21 0.00046 36.4 3.4 30 73-102 494-527 (1638)
163 KOG0330 ATP-dependent RNA heli 44.4 43 0.00094 29.2 4.5 29 16-44 117-145 (476)
164 COG0513 SrmB Superfamily II DN 42.9 51 0.0011 29.3 5.0 40 31-72 102-175 (513)
165 KOG0388 SNF2 family DNA-depend 42.9 15 0.00033 34.5 1.7 90 12-102 1026-1155(1185)
166 COG1110 Reverse gyrase [DNA re 40.8 53 0.0012 32.1 4.9 21 42-63 171-191 (1187)
167 PHA03065 Hypothetical protein; 38.7 83 0.0018 27.5 5.4 43 18-61 149-196 (438)
168 PF04599 Pox_G5: Poxvirus G5 p 38.4 94 0.002 27.2 5.7 46 16-61 145-194 (425)
169 KOG1513 Nuclear helicase MOP-3 38.1 90 0.0019 30.1 5.8 48 42-90 847-911 (1300)
170 PF04273 DUF442: Putative phos 33.1 67 0.0014 22.5 3.4 39 2-41 57-99 (110)
171 COG1197 Mfd Transcription-repa 31.8 80 0.0017 31.1 4.7 45 27-72 642-717 (1139)
172 KOG1015 Transcription regulato 31.1 67 0.0015 31.5 3.9 89 10-99 1122-1275(1567)
173 PF09936 Methyltrn_RNA_4: SAM- 29.4 26 0.00057 27.0 0.9 60 2-63 41-113 (185)
174 PF04312 DUF460: Protein of un 28.1 57 0.0012 24.0 2.4 21 42-63 66-86 (138)
175 PF05619 DUF787: Borrelia burg 27.5 1.6E+02 0.0035 24.7 5.2 70 14-85 103-201 (362)
176 KOG0343 RNA Helicase [RNA proc 26.6 59 0.0013 29.8 2.7 31 30-61 143-198 (758)
177 COG0074 SucD Succinyl-CoA synt 25.5 2.6E+02 0.0057 23.2 6.0 47 14-61 52-98 (293)
178 PRK13529 malate dehydrogenase; 25.2 72 0.0016 29.0 3.0 30 31-61 101-154 (563)
179 PF00006 ATP-synt_ab: ATP synt 22.2 1.9E+02 0.0042 22.6 4.6 33 28-61 69-112 (215)
180 COG0610 Type I site-specific r 22.2 3.3E+02 0.0072 26.5 7.0 49 51-99 591-651 (962)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=4.1e-28 Score=201.10 Aligned_cols=133 Identities=28% Similarity=0.489 Sum_probs=121.5
Q ss_pred eEEEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccE
Q 048509 3 VNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQV 56 (168)
Q Consensus 3 l~~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~i 56 (168)
++|+|++++..+|...|+.+|++...+++||||+|+.++ ..++++|+ +|..+|
T Consensus 275 lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk-~~~r~i 353 (476)
T KOG0330|consen 275 LKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFK-AGARSI 353 (476)
T ss_pred hhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHh-ccCCcE
Confidence 689999999999999999999999889999999999999 78899999 999999
Q ss_pred EEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCCCCCC
Q 048509 57 LVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCP 127 (168)
Q Consensus 57 LvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 127 (168)
||||||++||+|+|.| .+..+||||+|||||+|++|.+|+|++.-| ...+.+|+..+.. ..+
T Consensus 354 Lv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyD--------ve~~qrIE~~~gk-kl~ 424 (476)
T KOG0330|consen 354 LVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYD--------VELVQRIEHALGK-KLP 424 (476)
T ss_pred EEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhh--------hHHHHHHHHHHhc-CCC
Confidence 9999999999999999 668999999999999999999999999988 8889999888776 777
Q ss_pred CcCCChhhHhhhhhhhhh
Q 048509 128 VHSIPSSSIESLRPIYKS 145 (168)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~ 145 (168)
.++++.+..-.+.+....
T Consensus 425 ~~~~~~~~~~~l~erv~e 442 (476)
T KOG0330|consen 425 EYKVDKNEVMSLNERVAE 442 (476)
T ss_pred ccCcchHHHHHHHHHHHH
Confidence 788888777677666655
No 2
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.94 E-value=2.5e-26 Score=196.20 Aligned_cols=123 Identities=24% Similarity=0.443 Sum_probs=106.1
Q ss_pred eEEEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccE
Q 048509 3 VNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQV 56 (168)
Q Consensus 3 l~~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~i 56 (168)
|+|.++.+..++|...|..+|.+....++|||+|++..| +.+|..|+ ++..+|
T Consensus 492 veQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr-~~t~dI 570 (673)
T KOG0333|consen 492 VEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFR-EGTGDI 570 (673)
T ss_pred hheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHH-hcCCCE
Confidence 678999999999999999999998778999999999999 88999999 999999
Q ss_pred EEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCCCCCC
Q 048509 57 LVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCP 127 (168)
Q Consensus 57 LvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 127 (168)
||||||++||||||+| .++++|+||+|||||||+.|++++|+++.|...+| .+...+...-.
T Consensus 571 lVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~y-----dLkq~l~es~~---- 641 (673)
T KOG0333|consen 571 LVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFY-----DLKQALRESVK---- 641 (673)
T ss_pred EEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHH-----HHHHHHHHhhh----
Confidence 9999999999999999 66899999999999999999999999999966642 44443333322
Q ss_pred CcCCChhhH
Q 048509 128 VHSIPSSSI 136 (168)
Q Consensus 128 ~~~~~~~~~ 136 (168)
...|+++.
T Consensus 642 -s~~P~Ela 649 (673)
T KOG0333|consen 642 -SHCPPELA 649 (673)
T ss_pred -ccCChhhc
Confidence 35666655
No 3
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=1e-26 Score=200.57 Aligned_cols=126 Identities=29% Similarity=0.541 Sum_probs=112.4
Q ss_pred ceEEEEEEcCCCCHHHHHHHHHhccC---CCcEEEEcCCcchH--------------------------HHHHHHHHhCC
Q 048509 2 SVNLSPQICESKLKPIYLIPLLRNLG---GEKFIVFASSVANS--------------------------PKTLKAFRGKG 52 (168)
Q Consensus 2 ~l~~~~~~~~~~~K~~~L~~ll~~~~---~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~ 52 (168)
++.|....|++..|...|..+|.... .+++||||+|+..| +.+|+.|+ +|
T Consensus 312 ~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~Fr-eG 390 (519)
T KOG0331|consen 312 NIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFR-EG 390 (519)
T ss_pred chhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcc-cC
Confidence 46788889999999999999999774 56999999999999 88999999 99
Q ss_pred CccEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCC
Q 048509 53 HMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123 (168)
Q Consensus 53 ~~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (168)
+..||||||||+||||+|+| .++++|+||+|||||+|+.|.+++|+++.+... ...+.++++..++
T Consensus 391 ~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~-----a~~l~~~l~e~~q 465 (519)
T KOG0331|consen 391 KSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKL-----ARELIKVLREAGQ 465 (519)
T ss_pred CcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHH-----HHHHHHHHHHccC
Confidence 99999999999999999999 778999999999999999999999999999666 6777777777776
Q ss_pred CCCCCcCCChhhHhhh
Q 048509 124 DSCPVHSIPSSSIESL 139 (168)
Q Consensus 124 ~~~~~~~~~~~~~~~~ 139 (168)
.+|+.+.+..
T Consensus 466 ------~v~~~l~~~~ 475 (519)
T KOG0331|consen 466 ------TVPPDLLEYA 475 (519)
T ss_pred ------CCChHHHHHH
Confidence 7777776543
No 4
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1.2e-25 Score=188.02 Aligned_cols=130 Identities=25% Similarity=0.488 Sum_probs=115.1
Q ss_pred ceEEEEEEcCCCCHHHHHHHHHhccC-CCcEEEEcCCcchH--------------------------HHHHHHHHhCCCc
Q 048509 2 SVNLSPQICESKLKPIYLIPLLRNLG-GEKFIVFASSVANS--------------------------PKTLKAFRGKGHM 54 (168)
Q Consensus 2 ~l~~~~~~~~~~~K~~~L~~ll~~~~-~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~ 54 (168)
|++|.+++..+.+|+..+..++..+. ..++||||..+..| +.+++.|+ +|++
T Consensus 438 sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~k-sG~v 516 (629)
T KOG0336|consen 438 SVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFK-SGEV 516 (629)
T ss_pred eeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhh-cCce
Confidence 68899988889999999999998886 57999999998888 89999999 9999
Q ss_pred cEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCCCC
Q 048509 55 QVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDS 125 (168)
Q Consensus 55 ~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 125 (168)
+||||||+++||+|+|+| .+++.|+||+|||||+|+.|.+++|++.+|... ...+.+|++.+++
T Consensus 517 rILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~-----a~eLI~ILe~aeQ-- 589 (629)
T KOG0336|consen 517 RILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSM-----AEELIQILERAEQ-- 589 (629)
T ss_pred EEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHH-----HHHHHHHHHHhhh--
Confidence 999999999999999999 668999999999999999999999999999776 6788888888886
Q ss_pred CCCcCCChhhHhhhhhhhh
Q 048509 126 CPVHSIPSSSIESLRPIYK 144 (168)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~ 144 (168)
++|.++. .+.+.++
T Consensus 590 ----evPdeL~-~mAeryk 603 (629)
T KOG0336|consen 590 ----EVPDELV-RMAERYK 603 (629)
T ss_pred ----hCcHHHH-HHHHHHH
Confidence 8888776 3344443
No 5
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=5.1e-26 Score=186.92 Aligned_cols=121 Identities=21% Similarity=0.430 Sum_probs=109.0
Q ss_pred ceEEEEEEcCCCCHHHHHHHHHhccC---CCcEEEEcCCcchH--------------------------HHHHHHHHhCC
Q 048509 2 SVNLSPQICESKLKPIYLIPLLRNLG---GEKFIVFASSVANS--------------------------PKTLKAFRGKG 52 (168)
Q Consensus 2 ~l~~~~~~~~~~~K~~~L~~ll~~~~---~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~ 52 (168)
.|.|.|+.|+...|..+|+++|.... ...++|||||+.+| ..++.+|+ ++
T Consensus 225 tL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFr-s~ 303 (442)
T KOG0340|consen 225 TLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFR-SN 303 (442)
T ss_pred hhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHh-hc
Confidence 36789999999999999999998664 46899999999999 78899999 99
Q ss_pred CccEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCC
Q 048509 53 HMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123 (168)
Q Consensus 53 ~~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (168)
.++|||||||++||+|||.| .++.+||||+|||+|||+.|.+++|+++.| ++.+..|++..+.
T Consensus 304 ~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rD--------v~l~~aiE~~igk 375 (442)
T KOG0340|consen 304 AARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRD--------VELLQAIEEEIGK 375 (442)
T ss_pred CccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhh--------HHHHHHHHHHHhc
Confidence 99999999999999999999 789999999999999999999999999999 8999999999887
Q ss_pred CCCCCcCCC
Q 048509 124 DSCPVHSIP 132 (168)
Q Consensus 124 ~~~~~~~~~ 132 (168)
.+.+.+..
T Consensus 376 -Kl~e~~~~ 383 (442)
T KOG0340|consen 376 -KLTEYNKV 383 (442)
T ss_pred -cccccccc
Confidence 44444333
No 6
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=2.2e-25 Score=195.00 Aligned_cols=113 Identities=27% Similarity=0.482 Sum_probs=102.0
Q ss_pred ceEEEEEEcCCCC-HHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCc
Q 048509 2 SVNLSPQICESKL-KPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHM 54 (168)
Q Consensus 2 ~l~~~~~~~~~~~-K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~ 54 (168)
.|.|.|+.++..+ |...|..+++...+.++||||+|+..| .++++.|+ +|+.
T Consensus 246 ~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~-~g~~ 324 (513)
T COG0513 246 KIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFK-DGEL 324 (513)
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHH-cCCC
Confidence 4789999999876 999999999998888999999999999 89999999 9999
Q ss_pred cEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCC-chhHHHHHHHHHHHHHHHHhCC
Q 048509 55 QVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKD-EDKLLYMFQVKRFKKLLQQADH 123 (168)
Q Consensus 55 ~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~ 123 (168)
+|||||||++||||||+| .++++|+||+|||||+|+.|.+++|+++. | ...+..+.+....
T Consensus 325 ~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e--------~~~l~~ie~~~~~ 395 (513)
T COG0513 325 RVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEE--------VKKLKRIEKRLER 395 (513)
T ss_pred CEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHH--------HHHHHHHHHHHhc
Confidence 999999999999999999 66899999999999999999999999986 6 4556666665544
No 7
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=2.3e-25 Score=178.94 Aligned_cols=113 Identities=23% Similarity=0.373 Sum_probs=104.1
Q ss_pred ceEEEEEEcCCCC-HHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCc
Q 048509 2 SVNLSPQICESKL-KPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHM 54 (168)
Q Consensus 2 ~l~~~~~~~~~~~-K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~ 54 (168)
||+|+|+-++.++ |++.|..|.....-.+++|||||+..+ ++++.+|+ +|+.
T Consensus 239 gIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFR-sg~S 317 (400)
T KOG0328|consen 239 GIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFR-SGKS 317 (400)
T ss_pred hhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhh-cCCc
Confidence 5789999999665 999999999988889999999999998 89999999 9999
Q ss_pred cEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCC
Q 048509 55 QVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123 (168)
Q Consensus 55 ~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (168)
+||++|||.+||+|+|.| .+.+.||||+||.||.|+.|.++.|+..+| ...++.+.+....
T Consensus 318 rvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d--------~~~lrdieq~yst 387 (400)
T KOG0328|consen 318 RVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDD--------LRILRDIEQYYST 387 (400)
T ss_pred eEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHH--------HHHHHHHHHHHhh
Confidence 999999999999999999 557999999999999999999999999999 7778888777654
No 8
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.92 E-value=1.6e-24 Score=183.78 Aligned_cols=128 Identities=25% Similarity=0.354 Sum_probs=108.3
Q ss_pred ceEEEEEEcCCCCHHHHHHHHHhccCC-CcEEEEcCCcchH--------------------------HHHHHHHHhCCCc
Q 048509 2 SVNLSPQICESKLKPIYLIPLLRNLGG-EKFIVFASSVANS--------------------------PKTLKAFRGKGHM 54 (168)
Q Consensus 2 ~l~~~~~~~~~~~K~~~L~~ll~~~~~-~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~ 54 (168)
++.|.|++++.+.++.+|+.+|+++.. .++||||+|+..+ ..+..+|+ ..+.
T Consensus 303 ~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~-kaes 381 (543)
T KOG0342|consen 303 RLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFC-KAES 381 (543)
T ss_pred cccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHh-hccc
Confidence 478999999999999999999998765 8999999999988 88999999 9999
Q ss_pred cEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCCCC
Q 048509 55 QVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDS 125 (168)
Q Consensus 55 ~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 125 (168)
.|||||||+|||+|+|+| +++++||||+|||||.|..|.+++|+.|.| ...++.+ + .-+
T Consensus 382 gIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~E--------l~Flr~L-K---~lp 449 (543)
T KOG0342|consen 382 GILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWE--------LGFLRYL-K---KLP 449 (543)
T ss_pred ceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhH--------HHHHHHH-h---hCC
Confidence 999999999999999999 778999999999999999999999999999 3333333 2 335
Q ss_pred CCCcCCChhhHhhhhhh
Q 048509 126 CPVHSIPSSSIESLRPI 142 (168)
Q Consensus 126 ~~~~~~~~~~~~~~~~~ 142 (168)
++..++|+...+.+...
T Consensus 450 l~~~e~~~~~~~~v~~~ 466 (543)
T KOG0342|consen 450 LEEFEFPPLKPEDVQSQ 466 (543)
T ss_pred CcccCCCCCCHHHHHHH
Confidence 56666666555544433
No 9
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.91 E-value=3.3e-24 Score=183.24 Aligned_cols=124 Identities=23% Similarity=0.380 Sum_probs=105.7
Q ss_pred eEEEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccE
Q 048509 3 VNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQV 56 (168)
Q Consensus 3 l~~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~i 56 (168)
+++.++++...+|...|..++......++||||+|+..| ..++++|+ +|+++|
T Consensus 230 i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~-~g~~~v 308 (423)
T PRK04837 230 IKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFT-RGDLDI 308 (423)
T ss_pred eeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHH-cCCCcE
Confidence 566777788888999999999887778999999999988 78999999 999999
Q ss_pred EEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCCCCCC
Q 048509 57 LVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCP 127 (168)
Q Consensus 57 LvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 127 (168)
|||||+++||||+|+| .++++|+||+||+||+|+.|.+++|+++++ ...+..+.+.... .++
T Consensus 309 LVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~--------~~~~~~i~~~~~~-~~~ 379 (423)
T PRK04837 309 LVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEY--------ALNLPAIETYIGH-SIP 379 (423)
T ss_pred EEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHH--------HHHHHHHHHHhCC-CCC
Confidence 9999999999999999 568999999999999999999999999988 5666676665554 445
Q ss_pred CcCCChhhH
Q 048509 128 VHSIPSSSI 136 (168)
Q Consensus 128 ~~~~~~~~~ 136 (168)
..+++.+..
T Consensus 380 ~~~~~~~~~ 388 (423)
T PRK04837 380 VSKYDSDAL 388 (423)
T ss_pred CccCChhhh
Confidence 555555433
No 10
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=3.5e-24 Score=177.15 Aligned_cols=114 Identities=23% Similarity=0.390 Sum_probs=101.0
Q ss_pred ceEEEEEEcC-CCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCc
Q 048509 2 SVNLSPQICE-SKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHM 54 (168)
Q Consensus 2 ~l~~~~~~~~-~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~ 54 (168)
+|.|+|+.|. +++|+++|.+|......+++||||.|+.+| ..++++|+ .|..
T Consensus 303 ~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr-~g~~ 381 (477)
T KOG0332|consen 303 NIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFR-EGKE 381 (477)
T ss_pred chhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHh-cCcc
Confidence 5789999999 788999999988877788999999999999 88999999 9999
Q ss_pred cEEEEccccccCCCcCCC---------------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHH
Q 048509 55 QVLVCSDAMTSGMDVERA---------------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQ 119 (168)
Q Consensus 55 ~iLvaTdv~~rGlDi~~v---------------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~ 119 (168)
.|||+|+|.+||+|++.| +++++|+||+|||||.|+.|.++.|+...++.. .+.+|.+
T Consensus 382 kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~-------~mn~iq~ 454 (477)
T KOG0332|consen 382 KVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMN-------IMNKIQK 454 (477)
T ss_pred eEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHH-------HHHHHHH
Confidence 999999999999999999 778999999999999999999999998777543 4445555
Q ss_pred HhCC
Q 048509 120 QADH 123 (168)
Q Consensus 120 ~~~~ 123 (168)
..+.
T Consensus 455 ~F~~ 458 (477)
T KOG0332|consen 455 HFNM 458 (477)
T ss_pred HHhh
Confidence 5543
No 11
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=6.1e-24 Score=179.64 Aligned_cols=103 Identities=35% Similarity=0.545 Sum_probs=97.1
Q ss_pred ceEEEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH----------------------------HHHHHHHHhCCC
Q 048509 2 SVNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS----------------------------PKTLKAFRGKGH 53 (168)
Q Consensus 2 ~l~~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~----------------------------~~~~~~F~~~~~ 53 (168)
++..+|+.|++.+|...|+++|.+....++|||++||..+ .++++.|+ ...
T Consensus 229 ~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~-~~~ 307 (567)
T KOG0345|consen 229 SLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFR-KLS 307 (567)
T ss_pred hhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHH-hcc
Confidence 4788999999999999999999999999999999999999 88999999 889
Q ss_pred ccEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhH
Q 048509 54 MQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKL 105 (168)
Q Consensus 54 ~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~ 105 (168)
-.+|+||||++||||||+| .++..|+||+|||||+|+.|.|++|+.|.|+.|
T Consensus 308 ~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aY 368 (567)
T KOG0345|consen 308 NGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAY 368 (567)
T ss_pred CceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHH
Confidence 9999999999999999999 678999999999999999999999999988444
No 12
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=9e-24 Score=172.13 Aligned_cols=124 Identities=26% Similarity=0.422 Sum_probs=113.8
Q ss_pred CceEEEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCc
Q 048509 1 MSVNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHM 54 (168)
Q Consensus 1 ~~l~~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~ 54 (168)
+++.|+|-++.+.+|.-.|-.|+.+..-+++||||||...+ ..++.+|+ +|..
T Consensus 295 ~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr-~G~c 373 (459)
T KOG0326|consen 295 KGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFR-NGKC 373 (459)
T ss_pred cchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhh-cccc
Confidence 47899999999999999999999999999999999999988 88999999 9999
Q ss_pred cEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCCCC
Q 048509 55 QVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDS 125 (168)
Q Consensus 55 ~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 125 (168)
+.|||||++.||+|++.| .++++|+||+||.||.|..|.|+++++-+| ...+..|+++++.
T Consensus 374 rnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityed--------rf~L~~IE~eLGt-- 443 (459)
T KOG0326|consen 374 RNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYED--------RFNLYRIEQELGT-- 443 (459)
T ss_pred ceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhh--------hhhHHHHHHHhcc--
Confidence 999999999999999999 678999999999999999999999999999 7778889998876
Q ss_pred CCCcCCChhhH
Q 048509 126 CPVHSIPSSSI 136 (168)
Q Consensus 126 ~~~~~~~~~~~ 136 (168)
++.++|+...
T Consensus 444 -EI~pip~~iD 453 (459)
T KOG0326|consen 444 -EIKPIPSNID 453 (459)
T ss_pred -ccccCCCcCC
Confidence 5556665544
No 13
>PTZ00110 helicase; Provisional
Probab=99.89 E-value=6e-23 Score=180.84 Aligned_cols=125 Identities=26% Similarity=0.505 Sum_probs=108.9
Q ss_pred ceEEEEEEcCCCCHHHHHHHHHhcc--CCCcEEEEcCCcchH--------------------------HHHHHHHHhCCC
Q 048509 2 SVNLSPQICESKLKPIYLIPLLRNL--GGEKFIVFASSVANS--------------------------PKTLKAFRGKGH 53 (168)
Q Consensus 2 ~l~~~~~~~~~~~K~~~L~~ll~~~--~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~ 53 (168)
.+.|.+..+++.+|...|..+|... ...++||||+|+..| ..++++|+ +|+
T Consensus 349 ~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~-~G~ 427 (545)
T PTZ00110 349 NIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFK-TGK 427 (545)
T ss_pred CeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHh-cCC
Confidence 3677888888899999999999875 357999999999998 67999999 999
Q ss_pred ccEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCCC
Q 048509 54 MQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHD 124 (168)
Q Consensus 54 ~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 124 (168)
.+||||||+++||||+|+| .++++|+||+|||||+|+.|.|++|+++.+... ...+.++++...+
T Consensus 428 ~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~-----~~~l~~~l~~~~q- 501 (545)
T PTZ00110 428 SPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRL-----ARDLVKVLREAKQ- 501 (545)
T ss_pred CcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHH-----HHHHHHHHHHccC-
Confidence 9999999999999999999 668999999999999999999999999988555 5677777777765
Q ss_pred CCCCcCCChhhHhh
Q 048509 125 SCPVHSIPSSSIES 138 (168)
Q Consensus 125 ~~~~~~~~~~~~~~ 138 (168)
++|+++.+.
T Consensus 502 -----~vp~~l~~~ 510 (545)
T PTZ00110 502 -----PVPPELEKL 510 (545)
T ss_pred -----CCCHHHHHH
Confidence 788777744
No 14
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=2.8e-23 Score=176.77 Aligned_cols=130 Identities=38% Similarity=0.579 Sum_probs=114.9
Q ss_pred ceEEEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH------------------------------HHHHHHHHhC
Q 048509 2 SVNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS------------------------------PKTLKAFRGK 51 (168)
Q Consensus 2 ~l~~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~------------------------------~~~~~~F~~~ 51 (168)
++.++++.++...|...++.++......++|+|+++..++ .+.+++|. .
T Consensus 403 ~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~-~ 481 (620)
T KOG0350|consen 403 SLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFA-K 481 (620)
T ss_pred hhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHh-c
Confidence 4678889999999999999999999999999999999988 78899999 9
Q ss_pred CCccEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhC
Q 048509 52 GHMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQAD 122 (168)
Q Consensus 52 ~~~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (168)
|+++||||||+++||+|+.+| .+..+|+||+|||||||+.|.|++++...+ ...|.++++...
T Consensus 482 g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~--------~r~F~klL~~~~ 553 (620)
T KOG0350|consen 482 GDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHE--------KRLFSKLLKKTN 553 (620)
T ss_pred CCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeecccc--------chHHHHHHHHhc
Confidence 999999999999999999999 557999999999999999999999999999 677788777776
Q ss_pred C-CCCCCcCCChhhHhhhh
Q 048509 123 H-DSCPVHSIPSSSIESLR 140 (168)
Q Consensus 123 ~-~~~~~~~~~~~~~~~~~ 140 (168)
. +.++..++|...+....
T Consensus 554 ~~d~~~i~~~e~~~~~~~~ 572 (620)
T KOG0350|consen 554 LWDGVEIQPIEYIFIKDED 572 (620)
T ss_pred ccCCcceeecCchHHHHHH
Confidence 6 66777777766555443
No 15
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.89 E-value=6.2e-23 Score=176.47 Aligned_cols=134 Identities=26% Similarity=0.331 Sum_probs=111.4
Q ss_pred ceEEEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH----------------------------HHHHHHHHhCCC
Q 048509 2 SVNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS----------------------------PKTLKAFRGKGH 53 (168)
Q Consensus 2 ~l~~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~----------------------------~~~~~~F~~~~~ 53 (168)
+|+|+|++|+-.+|+.+|+.+++.+...+.|||++||+.+ ..++.+|- ...
T Consensus 287 ~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~-~~~ 365 (758)
T KOG0343|consen 287 NLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFV-RKR 365 (758)
T ss_pred hhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHH-Hhc
Confidence 5789999999999999999999999989999999999999 78899999 999
Q ss_pred ccEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCCC
Q 048509 54 MQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHD 124 (168)
Q Consensus 54 ~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 124 (168)
..||+|||+++||+|+|.| .++++||||+|||+|.+..|.++++++|.+ ...+..-++....
T Consensus 366 ~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psE--------eE~~l~~Lq~k~I- 436 (758)
T KOG0343|consen 366 AVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSE--------EEAMLKKLQKKKI- 436 (758)
T ss_pred ceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchh--------HHHHHHHHHHcCC-
Confidence 9999999999999999999 678999999999999999999999999998 4444444443332
Q ss_pred CCCCcCCChhhHhhhhhhhhh
Q 048509 125 SCPVHSIPSSSIESLRPIYKS 145 (168)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~ 145 (168)
++....+.++.+......++.
T Consensus 437 ~i~~i~i~~~k~~~i~~~l~~ 457 (758)
T KOG0343|consen 437 PIKEIKIDPEKLTSIRNKLEA 457 (758)
T ss_pred CHHhhccCHHHhhhHHHHHHH
Confidence 344445555555555554444
No 16
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=4e-23 Score=176.31 Aligned_cols=134 Identities=25% Similarity=0.419 Sum_probs=114.4
Q ss_pred eEEEEEEcC---CCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCC
Q 048509 3 VNLSPQICE---SKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGH 53 (168)
Q Consensus 3 l~~~~~~~~---~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~ 53 (168)
|+|.|+-.. +.++...|..|+......++||||.|+..| ..++++|+ ..+
T Consensus 398 LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk-~~e 476 (691)
T KOG0338|consen 398 LTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFK-KEE 476 (691)
T ss_pred hhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHH-hcc
Confidence 445555443 456888999999888888999999999999 78899999 999
Q ss_pred ccEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHh--C
Q 048509 54 MQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQA--D 122 (168)
Q Consensus 54 ~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~ 122 (168)
++|||||||++|||||+.| .+++.|+||+|||+|+|+.|.+++|+...| .+.++.+++.. .
T Consensus 477 idvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~d--------RkllK~iik~~~~a 548 (691)
T KOG0338|consen 477 IDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESD--------RKLLKEIIKSSTKA 548 (691)
T ss_pred CCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEecccc--------HHHHHHHHhhhhhc
Confidence 9999999999999999999 567999999999999999999999999999 67777777764 4
Q ss_pred CCCCCCcCCChhhHhhhhhhhhh
Q 048509 123 HDSCPVHSIPSSSIESLRPIYKS 145 (168)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~ 145 (168)
...+....+|++.++.+...+.+
T Consensus 549 ~~klk~R~i~~~~Iek~~~~iee 571 (691)
T KOG0338|consen 549 GSKLKNRNIPPEVIEKFRKKIEE 571 (691)
T ss_pred ccchhhcCCCHHHHHHHHHHHHH
Confidence 45677789999988887766655
No 17
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.89 E-value=2e-22 Score=176.54 Aligned_cols=123 Identities=26% Similarity=0.434 Sum_probs=105.2
Q ss_pred eEEEEEEcCCCCHHHHHHHHHhccC--CCcEEEEcCCcchH---------------------------HHHHHHHHhCCC
Q 048509 3 VNLSPQICESKLKPIYLIPLLRNLG--GEKFIVFASSVANS---------------------------PKTLKAFRGKGH 53 (168)
Q Consensus 3 l~~~~~~~~~~~K~~~L~~ll~~~~--~~~~iIF~~t~~~~---------------------------~~~~~~F~~~~~ 53 (168)
+++.++.++..+|...|..+|.... ..++||||+|+..| ..++++|+ +|+
T Consensus 340 v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr-~G~ 418 (518)
T PLN00206 340 VKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFL-VGE 418 (518)
T ss_pred eeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHH-CCC
Confidence 5778888998889999999997643 35899999999988 78999999 999
Q ss_pred ccEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCCC
Q 048509 54 MQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHD 124 (168)
Q Consensus 54 ~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 124 (168)
++||||||+++||||+|+| .++++|+||+|||||+|..|.+++|+++++... ...+.++++..++
T Consensus 419 ~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~-----~~~l~~~l~~~~~- 492 (518)
T PLN00206 419 VPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNL-----FPELVALLKSSGA- 492 (518)
T ss_pred CCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHH-----HHHHHHHHHHcCC-
Confidence 9999999999999999999 668999999999999999999999999888444 4566666666554
Q ss_pred CCCCcCCChhhHh
Q 048509 125 SCPVHSIPSSSIE 137 (168)
Q Consensus 125 ~~~~~~~~~~~~~ 137 (168)
.+|+++..
T Consensus 493 -----~vp~~l~~ 500 (518)
T PLN00206 493 -----AIPRELAN 500 (518)
T ss_pred -----CCCHHHHh
Confidence 78887763
No 18
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=1.7e-22 Score=172.45 Aligned_cols=124 Identities=25% Similarity=0.443 Sum_probs=110.0
Q ss_pred ceEEEEEEcCCCCHHHHHHHHHhccC---------CCcEEEEcCCcchH--------------------------HHHHH
Q 048509 2 SVNLSPQICESKLKPIYLIPLLRNLG---------GEKFIVFASSVANS--------------------------PKTLK 46 (168)
Q Consensus 2 ~l~~~~~~~~~~~K~~~L~~ll~~~~---------~~~~iIF~~t~~~~--------------------------~~~~~ 46 (168)
.+.|...+|++.+|...|+++|.... +..++|||+|+..| .++++
T Consensus 302 ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~ 381 (482)
T KOG0335|consen 302 NITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALN 381 (482)
T ss_pred cceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHH
Confidence 36899999999999999999998543 23899999999999 89999
Q ss_pred HHHhCCCccEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHH
Q 048509 47 AFRGKGHMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKL 117 (168)
Q Consensus 47 ~F~~~~~~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i 117 (168)
.|+ +|.+.+||||+|++||+|+|+| .++.+|+||||||||+|+.|.+++|++..+..+ .+.+.++
T Consensus 382 ~Fr-~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i-----~~~L~~~ 455 (482)
T KOG0335|consen 382 DFR-NGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNI-----AKALVEI 455 (482)
T ss_pred Hhh-cCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchh-----HHHHHHH
Confidence 999 9999999999999999999999 568999999999999999999999999777555 7888888
Q ss_pred HHHhCCCCCCCcCCChhhHh
Q 048509 118 LQQADHDSCPVHSIPSSSIE 137 (168)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~ 137 (168)
+.++++ .+|..+.+
T Consensus 456 l~ea~q------~vP~wl~~ 469 (482)
T KOG0335|consen 456 LTEANQ------EVPQWLSE 469 (482)
T ss_pred HHHhcc------cCcHHHHh
Confidence 888886 77766654
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.88 E-value=1.8e-22 Score=174.12 Aligned_cols=112 Identities=21% Similarity=0.309 Sum_probs=100.7
Q ss_pred eEEEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccE
Q 048509 3 VNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQV 56 (168)
Q Consensus 3 l~~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~i 56 (168)
+.++|+.++..+|...|..++....+.++||||+|+..| +.+++.|+ +|+++|
T Consensus 217 i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~-~g~~~v 295 (460)
T PRK11776 217 IEQRFYEVSPDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFA-NRSCSV 295 (460)
T ss_pred eeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHH-cCCCcE
Confidence 678889999888999999999988888999999999988 78999999 999999
Q ss_pred EEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCC
Q 048509 57 LVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123 (168)
Q Consensus 57 LvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (168)
|||||+++||+|+|++ .++++|+||+|||||+|..|.+++|+.+.| ...+..+.+..+.
T Consensus 296 LVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e--------~~~~~~i~~~~~~ 363 (460)
T PRK11776 296 LVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEE--------MQRANAIEDYLGR 363 (460)
T ss_pred EEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhH--------HHHHHHHHHHhCC
Confidence 9999999999999998 668999999999999999999999999988 5556666555543
No 20
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.88 E-value=3e-22 Score=171.47 Aligned_cols=111 Identities=23% Similarity=0.387 Sum_probs=95.9
Q ss_pred eEEEEEEcC-CCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCcc
Q 048509 3 VNLSPQICE-SKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQ 55 (168)
Q Consensus 3 l~~~~~~~~-~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~ 55 (168)
+.+.++.++ ..+|...|..+++.....++||||+|+..| ..+++.|+ +|+++
T Consensus 219 i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~-~G~~~ 297 (434)
T PRK11192 219 IHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLT-DGRVN 297 (434)
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHh-CCCCc
Confidence 556677666 467899999999877778999999999998 88999999 99999
Q ss_pred EEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhC
Q 048509 56 VLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQAD 122 (168)
Q Consensus 56 iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (168)
||||||+++||+|+|+| .++..|+||+||+||+|..|.+++|+...| ...+.++.+.+.
T Consensus 298 vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d--------~~~~~~i~~~~~ 365 (434)
T PRK11192 298 VLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHD--------HLLLGKIERYIE 365 (434)
T ss_pred EEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHH--------HHHHHHHHHHHh
Confidence 99999999999999999 567999999999999999999999999888 445555554443
No 21
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.88 E-value=3.5e-22 Score=176.87 Aligned_cols=124 Identities=22% Similarity=0.390 Sum_probs=104.9
Q ss_pred eEEEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccE
Q 048509 3 VNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQV 56 (168)
Q Consensus 3 l~~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~i 56 (168)
+.|.++.+...+|...|..++......++||||+|+..| ..+++.|+ +|+++|
T Consensus 232 i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr-~G~~~V 310 (572)
T PRK04537 232 VRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQ-KGQLEI 310 (572)
T ss_pred eeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHH-cCCCeE
Confidence 567888888889999999999887788999999999998 88999999 999999
Q ss_pred EEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCCCCCC
Q 048509 57 LVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCP 127 (168)
Q Consensus 57 LvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 127 (168)
|||||+++||||+|+| .++++|+||+||+||+|..|.+++|+++.+ ...+..+.+.+.. .++
T Consensus 311 LVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~--------~~~l~~i~~~~~~-~~~ 381 (572)
T PRK04537 311 LVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERY--------AMSLPDIEAYIEQ-KIP 381 (572)
T ss_pred EEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHH--------HHHHHHHHHHHcC-CCC
Confidence 9999999999999988 567999999999999999999999999887 5556666665543 444
Q ss_pred CcCCChhhH
Q 048509 128 VHSIPSSSI 136 (168)
Q Consensus 128 ~~~~~~~~~ 136 (168)
..+++.+.+
T Consensus 382 ~~~~~~~~~ 390 (572)
T PRK04537 382 VEPVTAELL 390 (572)
T ss_pred ccccChhhc
Confidence 444444433
No 22
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.88 E-value=3.6e-22 Score=172.43 Aligned_cols=112 Identities=24% Similarity=0.426 Sum_probs=99.7
Q ss_pred eEEEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccE
Q 048509 3 VNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQV 56 (168)
Q Consensus 3 l~~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~i 56 (168)
+.+++..++...|...|..++......++||||+|+..| .+++++|+ +|+++|
T Consensus 220 i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~-~g~~~i 298 (456)
T PRK10590 220 VTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFK-SGDIRV 298 (456)
T ss_pred eeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH-cCCCcE
Confidence 567888888888999999999887788999999999988 88899999 999999
Q ss_pred EEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCC
Q 048509 57 LVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123 (168)
Q Consensus 57 LvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (168)
|||||+++||+|+|+| .++++|+||+||+||+|..|.+++|+++.| ...+..+.+.+..
T Consensus 299 LVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d--------~~~~~~ie~~l~~ 366 (456)
T PRK10590 299 LVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDE--------HKLLRDIEKLLKK 366 (456)
T ss_pred EEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHH--------HHHHHHHHHHhcC
Confidence 9999999999999998 567999999999999999999999999988 5566666665554
No 23
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.87 E-value=3.4e-23 Score=177.93 Aligned_cols=131 Identities=25% Similarity=0.412 Sum_probs=111.4
Q ss_pred EEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccEEE
Q 048509 5 LSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQVLV 58 (168)
Q Consensus 5 ~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~iLv 58 (168)
...+.|+..+|..+|+.+|..+. +++|||||+.+.+ .+.+++|+ .....|||
T Consensus 441 Es~I~C~~~eKD~ylyYfl~ryP-GrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~-~~~~~VLi 518 (731)
T KOG0347|consen 441 ESLIECPPLEKDLYLYYFLTRYP-GRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFK-QSPSGVLI 518 (731)
T ss_pred HHhhcCCccccceeEEEEEeecC-CceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHh-cCCCeEEE
Confidence 34567888889888888887664 6999999999988 88999999 99999999
Q ss_pred EccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCCC-CCCC
Q 048509 59 CSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHD-SCPV 128 (168)
Q Consensus 59 aTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ 128 (168)
|||||+||+|||+| .+.+-|+||.|||+||++.|.+++|+.|.+ +..+.++++.+... .+++
T Consensus 519 aTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e--------~~~~~KL~ktL~k~~dlpi 590 (731)
T KOG0347|consen 519 ATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQE--------VGPLKKLCKTLKKKEDLPI 590 (731)
T ss_pred eehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHH--------hHHHHHHHHHHhhccCCCc
Confidence 99999999999999 556999999999999999999999999999 67777777666543 4577
Q ss_pred cCCChhhHhhhhhhhhh
Q 048509 129 HSIPSSSIESLRPIYKS 145 (168)
Q Consensus 129 ~~~~~~~~~~~~~~~~~ 145 (168)
+++...+++.+.+...-
T Consensus 591 fPv~~~~m~~lkeRvrL 607 (731)
T KOG0347|consen 591 FPVETDIMDALKERVRL 607 (731)
T ss_pred eeccHHHHHHHHHHHHH
Confidence 77777777777766655
No 24
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.87 E-value=1.3e-21 Score=174.63 Aligned_cols=120 Identities=23% Similarity=0.407 Sum_probs=102.0
Q ss_pred eEEEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccE
Q 048509 3 VNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQV 56 (168)
Q Consensus 3 l~~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~i 56 (168)
+.|.|+.+...+|...|..+|......++||||+|+..| .+++++|+ +|+++|
T Consensus 220 i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr-~G~~~I 298 (629)
T PRK11634 220 ISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLK-DGRLDI 298 (629)
T ss_pred eEEEEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHh-CCCCCE
Confidence 567888888889999999999988778999999999988 78999999 999999
Q ss_pred EEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCCCCCC
Q 048509 57 LVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCP 127 (168)
Q Consensus 57 LvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 127 (168)
|||||+++||||+|+| .++++|+||+|||||+|+.|.+++|+.+.| ...+..+.+.+.. .++
T Consensus 299 LVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e--------~~~l~~ie~~~~~-~i~ 369 (629)
T PRK11634 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE--------RRLLRNIERTMKL-TIP 369 (629)
T ss_pred EEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHH--------HHHHHHHHHHhCC-Ccc
Confidence 9999999999999998 568999999999999999999999999888 4455555554443 334
Q ss_pred CcCCC
Q 048509 128 VHSIP 132 (168)
Q Consensus 128 ~~~~~ 132 (168)
..++|
T Consensus 370 ~~~~p 374 (629)
T PRK11634 370 EVELP 374 (629)
T ss_pred eecCC
Confidence 44444
No 25
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.86 E-value=5.6e-21 Score=165.63 Aligned_cols=112 Identities=25% Similarity=0.379 Sum_probs=98.1
Q ss_pred eEEEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccE
Q 048509 3 VNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQV 56 (168)
Q Consensus 3 l~~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~i 56 (168)
+.++++.+...+|...|..++......++||||+++..| .++++.|+ +|+++|
T Consensus 310 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr-~G~~~v 388 (475)
T PRK01297 310 VEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFR-EGKIRV 388 (475)
T ss_pred ccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHh-CCCCcE
Confidence 457777888889999999999887778999999999988 68999999 999999
Q ss_pred EEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCC
Q 048509 57 LVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123 (168)
Q Consensus 57 LvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (168)
|||||+++||||+|+| .++.+|+||+||+||.|..|.+++|+.++| ...+..+.+.++.
T Consensus 389 LvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d--------~~~~~~~~~~~~~ 456 (475)
T PRK01297 389 LVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDD--------AFQLPEIEELLGR 456 (475)
T ss_pred EEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHH--------HHHHHHHHHHhCC
Confidence 9999999999999999 668999999999999999999999999876 3445555555543
No 26
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.85 E-value=3.9e-21 Score=161.82 Aligned_cols=138 Identities=20% Similarity=0.372 Sum_probs=115.6
Q ss_pred ceEEEEEEcCCCCHHHHHHHHHhc-cCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCc
Q 048509 2 SVNLSPQICESKLKPIYLIPLLRN-LGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHM 54 (168)
Q Consensus 2 ~l~~~~~~~~~~~K~~~L~~ll~~-~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~ 54 (168)
.++|+++.|.+++|+.+++.+|+- .-.+++||||||.+.| ..++++|. .|-+
T Consensus 241 qL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFN-kG~Y 319 (569)
T KOG0346|consen 241 QLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFN-KGLY 319 (569)
T ss_pred cceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhh-Ccce
Confidence 478999999999999999999984 3468999999999999 88999999 9999
Q ss_pred cEEEEccc-----------------------------------cccCCCcCCC---------CChhhHHhhhcccccCCC
Q 048509 55 QVLVCSDA-----------------------------------MTSGMDVERA---------AYIKTYIHRAGPRARAGQ 90 (168)
Q Consensus 55 ~iLvaTdv-----------------------------------~~rGlDi~~v---------~~~~~yihr~GR~gR~g~ 90 (168)
+|+||||. .+||||+.+| .++.+||||+|||||+++
T Consensus 320 divIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n 399 (569)
T KOG0346|consen 320 DIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNN 399 (569)
T ss_pred eEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCC
Confidence 99999992 4799999999 778999999999999999
Q ss_pred cceEEEEeeCCchhHHHHHHHHHHHHHHH----HhCCCCCCCcCCChhhHhhhhhhhhh
Q 048509 91 NGHCFTLLPKDEDKLLYMFQVKRFKKLLQ----QADHDSCPVHSIPSSSIESLRPIYKS 145 (168)
Q Consensus 91 ~g~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (168)
+|.+++|+.|.+..- ...+..+.. ..+...+.++++..+.++.+....+.
T Consensus 400 ~GtalSfv~P~e~~g-----~~~le~~~~d~~~~~~~qilqPY~f~~eevesfryR~eD 453 (569)
T KOG0346|consen 400 KGTALSFVSPKEEFG-----KESLESILKDENRQEGRQILQPYQFRMEEVESFRYRAED 453 (569)
T ss_pred CCceEEEecchHHhh-----hhHHHHHHhhHHhhcCccccccccchHHHHHHHHHHHHH
Confidence 999999999998543 223333332 23334567888888899888876665
No 27
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.85 E-value=1.2e-21 Score=163.11 Aligned_cols=123 Identities=28% Similarity=0.496 Sum_probs=104.6
Q ss_pred EEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccEEE
Q 048509 5 LSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQVLV 58 (168)
Q Consensus 5 ~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~iLv 58 (168)
|.+-++.++.|+-.|++.|++..+ +++|||..+..+ ..+++.|+ .|+-+|||
T Consensus 399 QevEyVkqEaKiVylLeCLQKT~P-pVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr-~gkKDVLV 476 (610)
T KOG0341|consen 399 QEVEYVKQEAKIVYLLECLQKTSP-PVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFR-AGKKDVLV 476 (610)
T ss_pred HHHHHHHhhhhhhhHHHHhccCCC-ceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHh-cCCCceEE
Confidence 334456678888888888887654 899999998888 78999999 99999999
Q ss_pred EccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCCCCCCCc
Q 048509 59 CSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVH 129 (168)
Q Consensus 59 aTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 129 (168)
||||++.|+|+|++ .++++|+||+|||||.|+.|.+.+|++++.+... +.+++.++..+.+
T Consensus 477 ATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esv----LlDLK~LL~EakQ------ 546 (610)
T KOG0341|consen 477 ATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESV----LLDLKHLLQEAKQ------ 546 (610)
T ss_pred EecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHH----HHHHHHHHHHhhc------
Confidence 99999999999999 4579999999999999999999999998876665 6788888888887
Q ss_pred CCChhhHhhh
Q 048509 130 SIPSSSIESL 139 (168)
Q Consensus 130 ~~~~~~~~~~ 139 (168)
.+|+-+.+..
T Consensus 547 ~vP~~L~~L~ 556 (610)
T KOG0341|consen 547 EVPPVLAELA 556 (610)
T ss_pred cCCHHHHHhC
Confidence 7776555443
No 28
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=1.4e-20 Score=161.44 Aligned_cols=103 Identities=28% Similarity=0.466 Sum_probs=93.2
Q ss_pred ceEEEEEEcCCCCHHHHHHHHHhcc----CCCcEEEEcCCcchH------------------------------------
Q 048509 2 SVNLSPQICESKLKPIYLIPLLRNL----GGEKFIVFASSVANS------------------------------------ 41 (168)
Q Consensus 2 ~l~~~~~~~~~~~K~~~L~~ll~~~----~~~~~iIF~~t~~~~------------------------------------ 41 (168)
+|.|+|.++++.-++-.|..+|.+. ...++|||+++++.+
T Consensus 395 qL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~ 474 (708)
T KOG0348|consen 395 QLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKF 474 (708)
T ss_pred HhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceE
Confidence 4789999999999999999998754 245899999999998
Q ss_pred ------------HHHHHHHHhCCCccEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeC
Q 048509 42 ------------PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPK 100 (168)
Q Consensus 42 ------------~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~ 100 (168)
..++..|+ ...-.||+||||++||+|+|+| .++.+|+||+|||+|+|..|.+++|+.|
T Consensus 475 ~rLHGsm~QeeRts~f~~Fs-~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P 553 (708)
T KOG0348|consen 475 YRLHGSMEQEERTSVFQEFS-HSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLP 553 (708)
T ss_pred EEecCchhHHHHHHHHHhhc-cccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecc
Confidence 78899999 8888899999999999999999 5679999999999999999999999999
Q ss_pred CchhH
Q 048509 101 DEDKL 105 (168)
Q Consensus 101 ~~~~~ 105 (168)
.|..+
T Consensus 554 ~Eaey 558 (708)
T KOG0348|consen 554 SEAEY 558 (708)
T ss_pred cHHHH
Confidence 99554
No 29
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=2.9e-20 Score=160.63 Aligned_cols=103 Identities=27% Similarity=0.458 Sum_probs=93.5
Q ss_pred ceEEEEEEcC-CCCHHHHHHHHHhccCCCcEEEEcCCcchH---------------------------HHHHHHHHhCCC
Q 048509 2 SVNLSPQICE-SKLKPIYLIPLLRNLGGEKFIVFASSVANS---------------------------PKTLKAFRGKGH 53 (168)
Q Consensus 2 ~l~~~~~~~~-~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~---------------------------~~~~~~F~~~~~ 53 (168)
+|.|..++|- +..|+.++..++...-..+++||+.+.+.| +.++++|+ .|+
T Consensus 360 ~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR-~g~ 438 (593)
T KOG0344|consen 360 TVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFR-IGK 438 (593)
T ss_pred hhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHh-ccC
Confidence 4667777776 677999999999988888999999999999 89999999 999
Q ss_pred ccEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhH
Q 048509 54 MQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKL 105 (168)
Q Consensus 54 ~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~ 105 (168)
++||||||+++||+|+.+| .+..+|+||+|||||+|+.|.||+|++.++..+
T Consensus 439 IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ 499 (593)
T KOG0344|consen 439 IWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPR 499 (593)
T ss_pred eeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchh
Confidence 9999999999999999999 556899999999999999999999999999433
No 30
>PTZ00424 helicase 45; Provisional
Probab=99.82 E-value=8.5e-20 Score=154.29 Aligned_cols=112 Identities=23% Similarity=0.414 Sum_probs=95.5
Q ss_pred eEEEEEEcCC-CCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCcc
Q 048509 3 VNLSPQICES-KLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQ 55 (168)
Q Consensus 3 l~~~~~~~~~-~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~ 55 (168)
+.++++.++. ..+...+..++......++||||+|+..| ..++++|+ +|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~-~g~~~ 319 (401)
T PTZ00424 241 IRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFR-SGSTR 319 (401)
T ss_pred ceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHH-cCCCC
Confidence 4566766664 45778888888877778999999999988 78899999 99999
Q ss_pred EEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCC
Q 048509 56 VLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123 (168)
Q Consensus 56 iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (168)
|||||+++++|+|+|++ .+..+|+||+||+||.|+.|.|++|+++.+ ...+..+.+....
T Consensus 320 vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~--------~~~~~~~e~~~~~ 388 (401)
T PTZ00424 320 VLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDD--------IEQLKEIERHYNT 388 (401)
T ss_pred EEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHH--------HHHHHHHHHHHCC
Confidence 99999999999999998 567999999999999999999999999888 5566666655543
No 31
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=8e-20 Score=156.24 Aligned_cols=127 Identities=24% Similarity=0.446 Sum_probs=109.7
Q ss_pred eEEEEEEcC-CCCHHHHHHHHHhccC-CCcEEEEcCCcchH--------------------------HHHHHHHHhCCCc
Q 048509 3 VNLSPQICE-SKLKPIYLIPLLRNLG-GEKFIVFASSVANS--------------------------PKTLKAFRGKGHM 54 (168)
Q Consensus 3 l~~~~~~~~-~~~K~~~L~~ll~~~~-~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~ 54 (168)
|+|.+.+|+ +..|+..|..-|-... .+++||||..+..+ .++|.+|+ .+..
T Consensus 441 ITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fK-kk~~ 519 (731)
T KOG0339|consen 441 ITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFK-KKRK 519 (731)
T ss_pred hhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHh-hcCC
Confidence 567777777 6678888888877654 57999999888877 78899999 9999
Q ss_pred cEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCCCC
Q 048509 55 QVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDS 125 (168)
Q Consensus 55 ~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 125 (168)
.|||+||+++||+||+++ .+++.|.||+|||||+|..|.+++++++.|... .-.+.+-++.+++
T Consensus 520 ~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~f-----AG~LVnnLe~agQ-- 592 (731)
T KOG0339|consen 520 PVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEF-----AGHLVNNLEGAGQ-- 592 (731)
T ss_pred ceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHH-----hhHHHHHHhhccc--
Confidence 999999999999999998 778999999999999999999999999999654 6777777788886
Q ss_pred CCCcCCChhhHhhhhh
Q 048509 126 CPVHSIPSSSIESLRP 141 (168)
Q Consensus 126 ~~~~~~~~~~~~~~~~ 141 (168)
++|.++.+..+.
T Consensus 593 ----nVP~~l~dlamk 604 (731)
T KOG0339|consen 593 ----NVPDELMDLAMK 604 (731)
T ss_pred ----cCChHHHHHHhh
Confidence 899998876543
No 32
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=7.6e-20 Score=151.58 Aligned_cols=121 Identities=24% Similarity=0.431 Sum_probs=107.3
Q ss_pred ceEEEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCcc
Q 048509 2 SVNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQ 55 (168)
Q Consensus 2 ~l~~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~ 55 (168)
+++|+|+.+..++|+..|..+.. .-.+++|||||+..+ ..+++.|+ +|+.+
T Consensus 239 gikq~~i~v~k~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~-~gssr 315 (397)
T KOG0327|consen 239 GIKQFYINVEKEEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFR-SGSSR 315 (397)
T ss_pred heeeeeeeccccccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhh-cCCce
Confidence 57899999999999999999998 556899999999988 88999999 99999
Q ss_pred EEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCCCCC
Q 048509 56 VLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSC 126 (168)
Q Consensus 56 iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 126 (168)
|||+||++|||+|+.++ ...++|+||+||+||.|++|.+++|++..+ ...+.++.+..+.
T Consensus 316 vlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d--------~~~lk~ie~~y~~--- 384 (397)
T KOG0327|consen 316 VLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEED--------VRDLKDIEKFYNT--- 384 (397)
T ss_pred EEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhh--------HHHHHhHHHhcCC---
Confidence 99999999999999997 667999999999999999999999999999 7888888877654
Q ss_pred CCcCCChhhH
Q 048509 127 PVHSIPSSSI 136 (168)
Q Consensus 127 ~~~~~~~~~~ 136 (168)
+..++|....
T Consensus 385 ~i~e~p~~~~ 394 (397)
T KOG0327|consen 385 PIEELPSNFA 394 (397)
T ss_pred cceecccchh
Confidence 5555665543
No 33
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.80 E-value=4e-19 Score=161.40 Aligned_cols=131 Identities=25% Similarity=0.468 Sum_probs=106.6
Q ss_pred ceEEEEEEcC-CCCHHHHHHHHHhccC-CCcEEEEcCCcchH--------------------------HHHHHHHHhCCC
Q 048509 2 SVNLSPQICE-SKLKPIYLIPLLRNLG-GEKFIVFASSVANS--------------------------PKTLKAFRGKGH 53 (168)
Q Consensus 2 ~l~~~~~~~~-~~~K~~~L~~ll~~~~-~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~ 53 (168)
.++|.+.+|. +.+|+..|..||.... ..++||||..+..| ..++++|+ ++.
T Consensus 585 ~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK-~~~ 663 (997)
T KOG0334|consen 585 EVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFK-NGV 663 (997)
T ss_pred cceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHh-ccC
Confidence 3688999999 8999999999998664 57999999999998 88999999 999
Q ss_pred ccEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCCC
Q 048509 54 MQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHD 124 (168)
Q Consensus 54 ~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 124 (168)
+++||||++++||+|+.++ .+.++|+||+|||||+|++|.|++|++|.+..+ ...+.+.++..
T Consensus 664 ~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~-----a~dl~~al~~~--- 735 (997)
T KOG0334|consen 664 VNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKY-----AGDLCKALELS--- 735 (997)
T ss_pred ceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhh-----HHHHHHHHHhc---
Confidence 9999999999999999998 678999999999999999999999999977444 33444333333
Q ss_pred CCCCcCCChhhHhhhhhhhhh
Q 048509 125 SCPVHSIPSSSIESLRPIYKS 145 (168)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~ 145 (168)
..++| ..++.+...+..
T Consensus 736 ---~~~~P-~~l~~l~~~f~~ 752 (997)
T KOG0334|consen 736 ---KQPVP-KLLQALSERFKA 752 (997)
T ss_pred ---cCCCc-hHHHHHHHHHHh
Confidence 34666 444455444444
No 34
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.76 E-value=2.7e-18 Score=153.07 Aligned_cols=97 Identities=18% Similarity=0.289 Sum_probs=86.2
Q ss_pred EEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccEEEE
Q 048509 6 SPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQVLVC 59 (168)
Q Consensus 6 ~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~iLva 59 (168)
.|.++....+...|..++......++||||+|+..| ..+++.|+ .|+++||||
T Consensus 214 ~~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~-~g~~~VLVa 292 (607)
T PRK11057 214 RYTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQ-RDDLQIVVA 292 (607)
T ss_pred eeeeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHH-CCCCCEEEE
Confidence 344455556677788888877778999999999998 88999999 999999999
Q ss_pred ccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCch
Q 048509 60 SDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDED 103 (168)
Q Consensus 60 Tdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~ 103 (168)
|+++++|||+|+| .++++|+||+||+||.|.+|.|++|+++.|.
T Consensus 293 T~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~ 345 (607)
T PRK11057 293 TVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADM 345 (607)
T ss_pred echhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHH
Confidence 9999999999999 6689999999999999999999999999883
No 35
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.76 E-value=5.3e-18 Score=147.05 Aligned_cols=88 Identities=19% Similarity=0.375 Sum_probs=78.7
Q ss_pred CHHHHHHHHHh-ccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccEEEEccccccC
Q 048509 14 LKPIYLIPLLR-NLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQVLVCSDAMTSG 66 (168)
Q Consensus 14 ~K~~~L~~ll~-~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~iLvaTdv~~rG 66 (168)
.....|..++. .....++||||+|+..| ..+++.|+ +|+++|||||+++++|
T Consensus 211 ~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~-~g~~~vLVaT~~~~~G 289 (470)
T TIGR00614 211 KILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQ-RDEIQVVVATVAFGMG 289 (470)
T ss_pred cHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHH-cCCCcEEEEechhhcc
Confidence 45666777776 34455679999999999 78899999 9999999999999999
Q ss_pred CCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCc
Q 048509 67 MDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDE 102 (168)
Q Consensus 67 lDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~ 102 (168)
||+|+| .++++|+||+||+||.|.+|.|++|+++.|
T Consensus 290 ID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d 334 (470)
T TIGR00614 290 INKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPAD 334 (470)
T ss_pred CCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhH
Confidence 999999 678999999999999999999999999988
No 36
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.72 E-value=9e-18 Score=147.03 Aligned_cols=101 Identities=24% Similarity=0.363 Sum_probs=91.1
Q ss_pred CceEEEEEEcCCC--------CHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHH
Q 048509 1 MSVNLSPQICESK--------LKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLK 46 (168)
Q Consensus 1 ~~l~~~~~~~~~~--------~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~ 46 (168)
+||+|+++..+.. .|++.|-++++.....++||||+....| ..+++
T Consensus 237 ~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~ 316 (980)
T KOG4284|consen 237 FGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVD 316 (980)
T ss_pred echhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHH
Confidence 5788998887754 5899999999999999999999998888 67788
Q ss_pred HHHhCCCccEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCc
Q 048509 47 AFRGKGHMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDE 102 (168)
Q Consensus 47 ~F~~~~~~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~ 102 (168)
.++ .-..+|||+||+.+||||-++| .+-++|.||+||+||.|..|.+++|+..+.
T Consensus 317 ~lr-~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 317 QLR-AFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDER 380 (980)
T ss_pred Hhh-hceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccch
Confidence 888 8889999999999999999999 566999999999999999999999998666
No 37
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.72 E-value=1.9e-17 Score=150.48 Aligned_cols=85 Identities=20% Similarity=0.306 Sum_probs=74.7
Q ss_pred CHHHHHHHHHhccCCCcEEEEcCCcchH----------------------------------HHHHHHHHhCCCccEEEE
Q 048509 14 LKPIYLIPLLRNLGGEKFIVFASSVANS----------------------------------PKTLKAFRGKGHMQVLVC 59 (168)
Q Consensus 14 ~K~~~L~~ll~~~~~~~~iIF~~t~~~~----------------------------------~~~~~~F~~~~~~~iLva 59 (168)
++...|..++.. ..++||||+|+..| .+++++|+ +|++++|||
T Consensus 259 ~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~-~G~i~vLVa 335 (742)
T TIGR03817 259 EAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALR-DGELLGVAT 335 (742)
T ss_pred HHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHH-cCCceEEEE
Confidence 456677777764 46999999999887 67788899 999999999
Q ss_pred ccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCC
Q 048509 60 SDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKD 101 (168)
Q Consensus 60 Tdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~ 101 (168)
||+++||||+|+| .++.+|+||+|||||+|+.|.+++++...
T Consensus 336 Td~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~ 386 (742)
T TIGR03817 336 TNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDD 386 (742)
T ss_pred CchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCC
Confidence 9999999999998 67899999999999999999999998743
No 38
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.72 E-value=2.9e-17 Score=152.22 Aligned_cols=96 Identities=16% Similarity=0.230 Sum_probs=82.0
Q ss_pred EEEEcCCCCH-HHHHHHHHhccC-CCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccEE
Q 048509 6 SPQICESKLK-PIYLIPLLRNLG-GEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQVL 57 (168)
Q Consensus 6 ~~~~~~~~~K-~~~L~~ll~~~~-~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~iL 57 (168)
+|.+++...+ ...|..++.... ..+.||||+|+..| ..++++|. .|+++||
T Consensus 656 ~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~-~Gei~VL 734 (1195)
T PLN03137 656 WYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWS-KDEINII 734 (1195)
T ss_pred EEEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHh-cCCCcEE
Confidence 4545544333 456777776443 56899999999998 88899999 9999999
Q ss_pred EEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCc
Q 048509 58 VCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDE 102 (168)
Q Consensus 58 vaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~ 102 (168)
|||++++||||+|+| .+++.|+||+||+||.|.+|.|++|+.+.|
T Consensus 735 VATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D 788 (1195)
T PLN03137 735 CATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSD 788 (1195)
T ss_pred EEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHH
Confidence 999999999999999 678999999999999999999999999888
No 39
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=4.7e-17 Score=145.00 Aligned_cols=99 Identities=20% Similarity=0.204 Sum_probs=84.9
Q ss_pred EEEEEcCCCCHHHHHHHHHhccC--CCcEEEEcCCcchH------------------------HHHHHHHHhCCCccEEE
Q 048509 5 LSPQICESKLKPIYLIPLLRNLG--GEKFIVFASSVANS------------------------PKTLKAFRGKGHMQVLV 58 (168)
Q Consensus 5 ~~~~~~~~~~K~~~L~~ll~~~~--~~~~iIF~~t~~~~------------------------~~~~~~F~~~~~~~iLv 58 (168)
+.+++++..+|...|.+++.... ..++||||+|+..+ +..+..|+ .+...|||
T Consensus 448 ~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~rE~~ii~~a-g~~g~VlV 526 (656)
T PRK12898 448 PDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDAEEAAIVARA-GQRGRITV 526 (656)
T ss_pred CCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHHHHHHHHHHc-CCCCcEEE
Confidence 45677888899999999998643 57899999999999 66667777 77888999
Q ss_pred EccccccCCCcC---CC--------------CChhhHHhhhcccccCCCcceEEEEeeCCchh
Q 048509 59 CSDAMTSGMDVE---RA--------------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDK 104 (168)
Q Consensus 59 aTdv~~rGlDi~---~v--------------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~ 104 (168)
|||+++||+||+ +| .+...|+||+|||||.|.+|.+++|++.+|+-
T Consensus 527 ATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l 589 (656)
T PRK12898 527 ATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDL 589 (656)
T ss_pred EccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHHH
Confidence 999999999999 33 55688999999999999999999999987743
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.71 E-value=4.1e-17 Score=145.01 Aligned_cols=98 Identities=21% Similarity=0.365 Sum_probs=87.3
Q ss_pred EEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccEEE
Q 048509 5 LSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQVLV 58 (168)
Q Consensus 5 ~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~iLv 58 (168)
..|......++...|..++......++||||+|+..| ..+++.|. +|+++|||
T Consensus 201 l~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~-~g~~~vlV 279 (591)
T TIGR01389 201 LRFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFL-YDDVKVMV 279 (591)
T ss_pred cEEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHH-cCCCcEEE
Confidence 3455556677888899999877778999999999999 77889999 99999999
Q ss_pred EccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCch
Q 048509 59 CSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDED 103 (168)
Q Consensus 59 aTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~ 103 (168)
||+++++|||+|+| .++++|+||+||+||.|.+|.|++|++++|.
T Consensus 280 aT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~ 333 (591)
T TIGR01389 280 ATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADI 333 (591)
T ss_pred EechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHH
Confidence 99999999999999 6789999999999999999999999988773
No 41
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.68 E-value=3.5e-16 Score=133.92 Aligned_cols=94 Identities=24% Similarity=0.397 Sum_probs=82.9
Q ss_pred CCCHHHHHHHHHhcc----CCCcEEEEcCCcchH-----------------------------------HHHHHHHHhCC
Q 048509 12 SKLKPIYLIPLLRNL----GGEKFIVFASSVANS-----------------------------------PKTLKAFRGKG 52 (168)
Q Consensus 12 ~~~K~~~L~~ll~~~----~~~~~iIF~~t~~~~-----------------------------------~~~~~~F~~~~ 52 (168)
++.|++.+..++++. ...++|||++.+++| .+++++|+ .|
T Consensus 346 ~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr-~G 424 (542)
T COG1111 346 EHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFR-KG 424 (542)
T ss_pred CCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHh-cC
Confidence 577899888888753 457999999999999 88999999 99
Q ss_pred CccEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHH
Q 048509 53 HMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLY 107 (168)
Q Consensus 53 ~~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~ 107 (168)
+.+|||||+|++.|||||+| ++.-.+|||.|||||. +.|.+++|++.++...-|
T Consensus 425 e~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtrdeay 487 (542)
T COG1111 425 EYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTRDEAY 487 (542)
T ss_pred CceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCchHHHH
Confidence 99999999999999999999 6678899999999996 999999999988544433
No 42
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.63 E-value=1.6e-15 Score=137.70 Aligned_cols=114 Identities=18% Similarity=0.210 Sum_probs=84.7
Q ss_pred EEEcCCCCHHHHHHHHHhcc--CCCcEEEEcCCcchH------------------------HHHHHHHHhCCCccEEEEc
Q 048509 7 PQICESKLKPIYLIPLLRNL--GGEKFIVFASSVANS------------------------PKTLKAFRGKGHMQVLVCS 60 (168)
Q Consensus 7 ~~~~~~~~K~~~L~~ll~~~--~~~~~iIF~~t~~~~------------------------~~~~~~F~~~~~~~iLvaT 60 (168)
.++++..+|...|...+... .+.++||||+|+..+ +..+..+. ....+|+|||
T Consensus 405 ~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~a-g~~g~VlIAT 483 (790)
T PRK09200 405 KVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEA-GQKGAVTVAT 483 (790)
T ss_pred eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHc-CCCCeEEEEc
Confidence 35567788999999999763 578999999999998 22223333 3344899999
Q ss_pred cccccCCCc---CCC--------------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhC
Q 048509 61 DAMTSGMDV---ERA--------------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQAD 122 (168)
Q Consensus 61 dv~~rGlDi---~~v--------------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (168)
|+++||+|| |+| .+...|+||+|||||.|.+|.+++|++.+|+-. -.+-...+.++...++
T Consensus 484 dmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~l~-~~~~~~~~~~~~~~~~ 561 (790)
T PRK09200 484 NMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDLL-KRFAPEELEKLKKKLK 561 (790)
T ss_pred cchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHHHH-HhhccHHHHHHHHHcC
Confidence 999999999 555 567899999999999999999999999877433 1111234445555544
No 43
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.62 E-value=3.9e-16 Score=131.22 Aligned_cols=102 Identities=24% Similarity=0.373 Sum_probs=90.7
Q ss_pred eEEEEEEcCCCCHHHHHHHHHhccC-CCcEEEEcCCcchH--------------------------HHHHHHHHhCCCcc
Q 048509 3 VNLSPQICESKLKPIYLIPLLRNLG-GEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQ 55 (168)
Q Consensus 3 l~~~~~~~~~~~K~~~L~~ll~~~~-~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~ 55 (168)
++..+..+...+|..+|+.++.... .++++|||.|+..+ ...+.+|+ .++..
T Consensus 235 lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~-~~k~~ 313 (529)
T KOG0337|consen 235 LKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFR-GRKTS 313 (529)
T ss_pred hhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhcccccc-CCccc
Confidence 4677888999999999999998765 57899999999999 34678999 99999
Q ss_pred EEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhH
Q 048509 56 VLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKL 105 (168)
Q Consensus 56 iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~ 105 (168)
+||.||+++||+|+|.. .+...|+||+||++|+|+.|++|+|+.+.+..+
T Consensus 314 ~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~y 372 (529)
T KOG0337|consen 314 ILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPY 372 (529)
T ss_pred eEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchh
Confidence 99999999999999988 334778999999999999999999999999554
No 44
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.61 E-value=5.5e-16 Score=131.13 Aligned_cols=84 Identities=26% Similarity=0.519 Sum_probs=75.1
Q ss_pred HhccCCCcEEEEcCCcchH-----------------------------HHHHHHHHhCCCccEEEEccccccCCCcCCC-
Q 048509 23 LRNLGGEKFIVFASSVANS-----------------------------PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA- 72 (168)
Q Consensus 23 l~~~~~~~~iIF~~t~~~~-----------------------------~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v- 72 (168)
++++.-+++||||+|+..| .+.++.|+ ...++.||||||++||+||..+
T Consensus 500 i~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fk-k~dvkflictdvaargldi~g~p 578 (725)
T KOG0349|consen 500 IRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFK-KFDVKFLICTDVAARGLDITGLP 578 (725)
T ss_pred hhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhh-hcCeEEEEEehhhhccccccCCc
Confidence 3445567999999999999 78999999 9999999999999999999998
Q ss_pred --------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHH
Q 048509 73 --------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLY 107 (168)
Q Consensus 73 --------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~ 107 (168)
++-.+|+||+||+||+.+-|.+|+++...-++.||
T Consensus 579 ~~invtlpd~k~nyvhrigrvgraermglaislvat~~ekvwy 621 (725)
T KOG0349|consen 579 FMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVPEKVWY 621 (725)
T ss_pred eEEEEecCcccchhhhhhhccchhhhcceeEEEeeccchheee
Confidence 56689999999999999999999999877766665
No 45
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.60 E-value=4.8e-15 Score=135.74 Aligned_cols=114 Identities=16% Similarity=0.196 Sum_probs=91.0
Q ss_pred EEcCCCCHHHHHHHHHhcc--CCCcEEEEcCCcchH------------------------HHHHHHHHhCCCccEEEEcc
Q 048509 8 QICESKLKPIYLIPLLRNL--GGEKFIVFASSVANS------------------------PKTLKAFRGKGHMQVLVCSD 61 (168)
Q Consensus 8 ~~~~~~~K~~~L~~ll~~~--~~~~~iIF~~t~~~~------------------------~~~~~~F~~~~~~~iLvaTd 61 (168)
++....+|..+|...+... .+.++||||+|+..+ +..+..|+ .+...|+||||
T Consensus 576 vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLnakq~~REa~Iia~A-G~~g~VtIATN 654 (1025)
T PRK12900 576 VYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNAKQHDREAEIVAEA-GQKGAVTIATN 654 (1025)
T ss_pred EecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecCCHHHhHHHHHHhc-CCCCeEEEecc
Confidence 4555678999999999654 578999999999888 78899999 99999999999
Q ss_pred ccccCCCcC---CC--------------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCC
Q 048509 62 AMTSGMDVE---RA--------------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123 (168)
Q Consensus 62 v~~rGlDi~---~v--------------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (168)
+|+||+||+ +| .+...|.||.|||||.|.+|.++.|++.+|+-.-. +-...+.++++.++.
T Consensus 655 MAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lmr~-f~~~~i~~~~~~~~~ 732 (1025)
T PRK12900 655 MAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMRL-FGSDRVISVMDRLGH 732 (1025)
T ss_pred CcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHHHh-hCcHHHHHHHHHcCC
Confidence 999999999 44 44577999999999999999999999988744311 111235556655554
No 46
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.60 E-value=1.4e-16 Score=127.17 Aligned_cols=92 Identities=28% Similarity=0.406 Sum_probs=82.5
Q ss_pred ceEEEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchHHHHHHHHHhCCCccEEEEccccccCCCcCCC---------
Q 048509 2 SVNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERA--------- 72 (168)
Q Consensus 2 ~l~~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v--------- 72 (168)
|++|+|+...+.+|...|.+||.....++++||+.+.... . |. -+ |||||++.||+||..|
T Consensus 257 GLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~Rl----~-f~----kr-~vat~lfgrgmdiervNi~~NYdmp 326 (387)
T KOG0329|consen 257 GLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQRL----S-FQ----KR-LVATDLFGRGMDIERVNIVFNYDMP 326 (387)
T ss_pred hHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhhh----h-hh----hh-hHHhhhhccccCcccceeeeccCCC
Confidence 6899999999999999999999999999999999986542 2 54 23 9999999999999988
Q ss_pred CChhhHHhhhcccccCCCcceEEEEeeCCch
Q 048509 73 AYIKTYIHRAGPRARAGQNGHCFTLLPKDED 103 (168)
Q Consensus 73 ~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~ 103 (168)
.++++|+||+||+||.|..|.+|+|++.+++
T Consensus 327 ~~~DtYlHrv~rAgrfGtkglaitfvs~e~d 357 (387)
T KOG0329|consen 327 EDSDTYLHRVARAGRFGTKGLAITFVSDEND 357 (387)
T ss_pred CCchHHHHHhhhhhccccccceeehhcchhh
Confidence 7789999999999999999999999987764
No 47
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.58 E-value=1.4e-14 Score=130.94 Aligned_cols=115 Identities=15% Similarity=0.164 Sum_probs=84.0
Q ss_pred EEEcCCCCHHHHHHHHHhc--cCCCcEEEEcCCcchH------------------------HHHHHHHHhCCCccEEEEc
Q 048509 7 PQICESKLKPIYLIPLLRN--LGGEKFIVFASSVANS------------------------PKTLKAFRGKGHMQVLVCS 60 (168)
Q Consensus 7 ~~~~~~~~K~~~L~~ll~~--~~~~~~iIF~~t~~~~------------------------~~~~~~F~~~~~~~iLvaT 60 (168)
.+++...+|..++...+.. ....++||||+|+..+ +..+-.+. -....|+|||
T Consensus 401 ~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~a-g~~g~VlIAT 479 (762)
T TIGR03714 401 KIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEA-GQKGAVTVAT 479 (762)
T ss_pred eEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHc-CCCCeEEEEc
Confidence 4667778899999998876 3467999999999888 33333334 3445899999
Q ss_pred cccccCCCcC---------CC--------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCC
Q 048509 61 DAMTSGMDVE---------RA--------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123 (168)
Q Consensus 61 dv~~rGlDi~---------~v--------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (168)
|+++||+||+ ++ ++...++||+|||||.|.+|.+++|++.+|+-.- .+--..+..++..++.
T Consensus 480 dmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid~qr~GRtGRqG~~G~s~~~is~eD~l~~-~~~~~~~~~~~~~~~~ 558 (762)
T TIGR03714 480 SMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVDLQLRGRSGRQGDPGSSQFFVSLEDDLIK-RWSPSWLKKYYKKYSV 558 (762)
T ss_pred cccccccCCCCCccccccCCeEEEEecCCCCcHHHHHhhhcccCCCCceeEEEEEccchhhhh-hcchHHHHHHHHHcCC
Confidence 9999999999 44 3334559999999999999999999998774331 1112344555555543
No 48
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.57 E-value=2.7e-14 Score=128.42 Aligned_cols=75 Identities=20% Similarity=0.268 Sum_probs=65.7
Q ss_pred CCcEEEEcCCcchH--------------------------HHHHHHH-HhCCCccEEEEccccccCCCcCCC------C-
Q 048509 28 GEKFIVFASSVANS--------------------------PKTLKAF-RGKGHMQVLVCSDAMTSGMDVERA------A- 73 (168)
Q Consensus 28 ~~~~iIF~~t~~~~--------------------------~~~~~~F-~~~~~~~iLvaTdv~~rGlDi~~v------~- 73 (168)
.+++||||+++..| ++++++| + +|+.+||||||+++||||+|+| .
T Consensus 395 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~eq~l~~ff~-~gk~kILVATdIAERGIDIp~V~~VID~G~ 473 (675)
T PHA02653 395 GSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNIDEILEKVYS-SKNPSIIISTPYLESSVTIRNATHVYDTGR 473 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHHHHHHHHHhc-cCceeEEeccChhhccccccCeeEEEECCC
Confidence 46899999999888 3567787 7 8999999999999999999999 1
Q ss_pred --------------ChhhHHhhhcccccCCCcceEEEEeeCCchh
Q 048509 74 --------------YIKTYIHRAGPRARAGQNGHCFTLLPKDEDK 104 (168)
Q Consensus 74 --------------~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~ 104 (168)
+.++|+||+|||||. ++|.|+.|+++.+..
T Consensus 474 ~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~ 517 (675)
T PHA02653 474 VYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLK 517 (675)
T ss_pred ccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhH
Confidence 456899999999999 899999999977743
No 49
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.56 E-value=3.3e-14 Score=128.00 Aligned_cols=114 Identities=16% Similarity=0.190 Sum_probs=89.7
Q ss_pred EEcCCCCHHHHHHHHHhc--cCCCcEEEEcCCcchH------------------------HHHHHHHHhCCCccEEEEcc
Q 048509 8 QICESKLKPIYLIPLLRN--LGGEKFIVFASSVANS------------------------PKTLKAFRGKGHMQVLVCSD 61 (168)
Q Consensus 8 ~~~~~~~K~~~L~~ll~~--~~~~~~iIF~~t~~~~------------------------~~~~~~F~~~~~~~iLvaTd 61 (168)
++....+|..++.+.+.. ....++||||+|...+ +..+.+|+ .+...|+||||
T Consensus 383 i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~q~~rEa~ii~~a-g~~g~VtIATn 461 (745)
T TIGR00963 383 VYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAKNHEREAEIIAQA-GRKGAVTIATN 461 (745)
T ss_pred EEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCChHHHHHHHHHhc-CCCceEEEEec
Confidence 344556788888776643 2468999999999988 77888999 99999999999
Q ss_pred ccccCCCcCC--C--------------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCC
Q 048509 62 AMTSGMDVER--A--------------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123 (168)
Q Consensus 62 v~~rGlDi~~--v--------------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (168)
+|+||+||+. | .+...|.||.|||||.|.+|.+..|++.+|+-.- .+....+.++++.+..
T Consensus 462 mAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l~~-~~~~~~~~~~~~~~~~ 538 (745)
T TIGR00963 462 MAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLMR-IFGGDRLEGLMRRLGL 538 (745)
T ss_pred cccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHHHHH-hhhhHHHHHHHHHcCC
Confidence 9999999998 3 6679999999999999999999999998874431 1112344555555543
No 50
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.55 E-value=3.2e-14 Score=131.57 Aligned_cols=72 Identities=14% Similarity=0.343 Sum_probs=60.8
Q ss_pred CCcEEEEcCCcchH--------------------------------HHHHHHHHhCCCccEEEEccccccCCCcCCC---
Q 048509 28 GEKFIVFASSVANS--------------------------------PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA--- 72 (168)
Q Consensus 28 ~~~~iIF~~t~~~~--------------------------------~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v--- 72 (168)
..++||||||+..| ..+++.|+ +|+++|||||+++++|||+|+|
T Consensus 284 ~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk-~G~i~vLVaTs~Le~GIDip~Vd~V 362 (876)
T PRK13767 284 HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLK-RGELKVVVSSTSLELGIDIGYIDLV 362 (876)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHH-cCCCeEEEECChHHhcCCCCCCcEE
Confidence 46899999999887 56788999 9999999999999999999998
Q ss_pred ------CChhhHHhhhcccccC-CCcceEEEEeeC
Q 048509 73 ------AYIKTYIHRAGPRARA-GQNGHCFTLLPK 100 (168)
Q Consensus 73 ------~~~~~yihr~GR~gR~-g~~g~~~~~~~~ 100 (168)
.++.+|+||+||+||. |..+.++.++..
T Consensus 363 I~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 363 VLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred EEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 6689999999999986 444445555543
No 51
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.55 E-value=1.6e-14 Score=120.64 Aligned_cols=87 Identities=21% Similarity=0.304 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHhcc-CCCcEEEEcCCcchH--------------------------------HHHHHHHHhCCCccEEEE
Q 048509 13 KLKPIYLIPLLRNL-GGEKFIVFASSVANS--------------------------------PKTLKAFRGKGHMQVLVC 59 (168)
Q Consensus 13 ~~K~~~L~~ll~~~-~~~~~iIF~~t~~~~--------------------------------~~~~~~F~~~~~~~iLva 59 (168)
..+...+..++... .+.++||||+|+..| .++++.|+ ++...||||
T Consensus 206 ~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~-~~~~~ilva 284 (358)
T TIGR01587 206 VGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMK-KNEKFVIVA 284 (358)
T ss_pred ccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhc-CCCCeEEEE
Confidence 45677777777654 367999999999998 12588999 999999999
Q ss_pred ccccccCCCcCCC------CChhhHHhhhcccccCCCc----ceEEEEeeC
Q 048509 60 SDAMTSGMDVERA------AYIKTYIHRAGPRARAGQN----GHCFTLLPK 100 (168)
Q Consensus 60 Tdv~~rGlDi~~v------~~~~~yihr~GR~gR~g~~----g~~~~~~~~ 100 (168)
||++++|+|++.. ..+++|+||+||+||.|+. |.++.|...
T Consensus 285 T~~~~~GiDi~~~~vi~~~~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~ 335 (358)
T TIGR01587 285 TQVIEASLDISADVMITELAPIDSLIQRLGRLHRYGRKNGENFEVYIITIA 335 (358)
T ss_pred CcchhceeccCCCEEEEcCCCHHHHHHHhccccCCCCCCCCCCeEEEEeec
Confidence 9999999999843 5579999999999998854 356666543
No 52
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.54 E-value=4.9e-14 Score=130.52 Aligned_cols=91 Identities=24% Similarity=0.301 Sum_probs=80.6
Q ss_pred CCCCHHHHHHHHHhccCCCcEEEEcCCcchH---------------------------HHHHHHHHhCC--CccEEEEcc
Q 048509 11 ESKLKPIYLIPLLRNLGGEKFIVFASSVANS---------------------------PKTLKAFRGKG--HMQVLVCSD 61 (168)
Q Consensus 11 ~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~---------------------------~~~~~~F~~~~--~~~iLvaTd 61 (168)
..+.|...|.++|+.....++||||+++.++ .++++.|+ ++ ..+|||||+
T Consensus 476 ~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~-~~~~~~~VLIsTd 554 (956)
T PRK04914 476 NFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFA-DEEDGAQVLLCSE 554 (956)
T ss_pred ccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHh-cCCCCccEEEech
Confidence 3456999999999988888999999999999 88999999 74 599999999
Q ss_pred ccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCc
Q 048509 62 AMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDE 102 (168)
Q Consensus 62 v~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~ 102 (168)
++++|+|++.+ .+++.|.||+||++|.|+.+.+..++...+
T Consensus 555 vgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~ 604 (956)
T PRK04914 555 IGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLE 604 (956)
T ss_pred hhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCC
Confidence 99999999988 678999999999999999998777765444
No 53
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.54 E-value=4.2e-14 Score=133.32 Aligned_cols=72 Identities=21% Similarity=0.409 Sum_probs=65.2
Q ss_pred CCcEEEEcCCcchH----------------------------HHHHHHHHhCCCccEEEEccccccCCCcCCC-------
Q 048509 28 GEKFIVFASSVANS----------------------------PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA------- 72 (168)
Q Consensus 28 ~~~~iIF~~t~~~~----------------------------~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v------- 72 (168)
.++++||||++..+ .+++.+|+ +|+++||||||+++||+|+|++
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr-~Gk~~VLVaTdIierGIDIP~v~~VIi~~ 887 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFH-HQRFNVLVCTTIIETGIDIPTANTIIIER 887 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHH-hcCCCEEEECchhhcccccccCCEEEEec
Confidence 46899999998776 79999999 9999999999999999999999
Q ss_pred ---CChhhHHhhhcccccCCCcceEEEEeeC
Q 048509 73 ---AYIKTYIHRAGPRARAGQNGHCFTLLPK 100 (168)
Q Consensus 73 ---~~~~~yihr~GR~gR~g~~g~~~~~~~~ 100 (168)
-+..+|+||+||+||.|+.|.|++++.+
T Consensus 888 ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 888 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred CCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 1357899999999999999999988754
No 54
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.54 E-value=9.3e-14 Score=124.97 Aligned_cols=128 Identities=20% Similarity=0.268 Sum_probs=93.7
Q ss_pred CCCHHHHHHHHHhcc--CCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccEEEEcccc
Q 048509 12 SKLKPIYLIPLLRNL--GGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQVLVCSDAM 63 (168)
Q Consensus 12 ~~~K~~~L~~ll~~~--~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~iLvaTdv~ 63 (168)
...++..|...|... ...++||||+|+..| ..+++.|+ .|++.|||||+++
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~-~g~i~vlV~t~~L 506 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLR-LGEFDVLVGINLL 506 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHH-cCCceEEEEeCHH
Confidence 344566666666644 356899999999999 56788999 9999999999999
Q ss_pred ccCCCcCCC--------------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHH-HHHHHHHHHHHHhCCCCCCC
Q 048509 64 TSGMDVERA--------------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYM-FQVKRFKKLLQQADHDSCPV 128 (168)
Q Consensus 64 ~rGlDi~~v--------------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~ 128 (168)
++|+|+|++ .+..+|+||+|||||. ..|.+++|++..+...... ......+++....+. ..
T Consensus 507 ~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~ 582 (652)
T PRK05298 507 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNE---EH 582 (652)
T ss_pred hCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhh---cc
Confidence 999999998 2468899999999996 7899999998544222111 123445555544443 45
Q ss_pred cCCChhhHhhhhhhhh
Q 048509 129 HSIPSSSIESLRPIYK 144 (168)
Q Consensus 129 ~~~~~~~~~~~~~~~~ 144 (168)
..+|...++.+...+.
T Consensus 583 ~~~~~~~~~~~~~~~~ 598 (652)
T PRK05298 583 GITPKTIKKKIRDILD 598 (652)
T ss_pred CCCChhHHHHHHHHHH
Confidence 5777777776666553
No 55
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.51 E-value=5.7e-14 Score=125.64 Aligned_cols=88 Identities=25% Similarity=0.442 Sum_probs=76.7
Q ss_pred CCCHHHHHHHHHhcc----CCCcEEEEcCCcchH-------------------------------------HHHHHHHHh
Q 048509 12 SKLKPIYLIPLLRNL----GGEKFIVFASSVANS-------------------------------------PKTLKAFRG 50 (168)
Q Consensus 12 ~~~K~~~L~~ll~~~----~~~~~iIF~~t~~~~-------------------------------------~~~~~~F~~ 50 (168)
...|+..|.++|.+. ...++||||+++.+| .+++++|+
T Consensus 393 ~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr- 471 (746)
T KOG0354|consen 393 ENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFR- 471 (746)
T ss_pred cChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHh-
Confidence 467888888888754 356999999999999 89999999
Q ss_pred CCCccEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCc
Q 048509 51 KGHMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDE 102 (168)
Q Consensus 51 ~~~~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~ 102 (168)
.|+++|||||+|++.||||++| .++-..|||.|| ||+ +.|.++++.+..+
T Consensus 472 ~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~ 530 (746)
T KOG0354|consen 472 DGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSE 530 (746)
T ss_pred CCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchh
Confidence 9999999999999999999999 668889999999 997 5778888877433
No 56
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.51 E-value=6.1e-14 Score=126.72 Aligned_cols=57 Identities=23% Similarity=0.413 Sum_probs=52.4
Q ss_pred HHHHHHHHhCCCccEEEEccccccCCCcCCC----------CChhhHHhhhcccccCCCcceEEEEee
Q 048509 42 PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA----------AYIKTYIHRAGPRARAGQNGHCFTLLP 99 (168)
Q Consensus 42 ~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v----------~~~~~yihr~GR~gR~g~~g~~~~~~~ 99 (168)
.+++++|+ +|+++|||||+++++|+|+|++ .....|.||+||+||.|.+|.|++++.
T Consensus 521 ~~i~~~F~-~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 521 DAVMAAFK-AGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred HHHHHHHH-cCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 88999999 9999999999999999999998 134677889999999999999999995
No 57
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.50 E-value=5.6e-14 Score=128.12 Aligned_cols=93 Identities=18% Similarity=0.235 Sum_probs=69.4
Q ss_pred EEEcCCCCHHHHHHHHHh---ccCCCcEEEEcCCcchH------------------------H-----HHHHHHHhC---
Q 048509 7 PQICESKLKPIYLIPLLR---NLGGEKFIVFASSVANS------------------------P-----KTLKAFRGK--- 51 (168)
Q Consensus 7 ~~~~~~~~K~~~L~~ll~---~~~~~~~iIF~~t~~~~------------------------~-----~~~~~F~~~--- 51 (168)
++.++.+.|...+...+. ....+++||||||+..| . +++++|+ .
T Consensus 248 ~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~~lLHG~m~q~dR~~~~~~~il~~Fk-~~~~ 326 (844)
T TIGR02621 248 LVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKFELLTGTLRGAERDDLVKKEIFNRFL-PQML 326 (844)
T ss_pred EEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCCeEeeCCCCHHHHhhHHHHHHHHHHh-cccc
Confidence 344455555544443332 23457899999999999 3 6688998 7
Q ss_pred -CC-------ccEEEEccccccCCCcCCC------CChhhHHhhhcccccCCCc-ceEEEEeeC
Q 048509 52 -GH-------MQVLVCSDAMTSGMDVERA------AYIKTYIHRAGPRARAGQN-GHCFTLLPK 100 (168)
Q Consensus 52 -~~-------~~iLvaTdv~~rGlDi~~v------~~~~~yihr~GR~gR~g~~-g~~~~~~~~ 100 (168)
++ ..||||||+++|||||+.. ..+++|+||+||+||+|+. +.+++++..
T Consensus 327 ~g~~~~~~~g~~ILVATdVaerGLDId~d~VI~d~aP~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 327 SGSRARPQQGTVYLVCTSAGEVGVNISADHLVCDLAPFESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred ccccccccccceEEeccchhhhcccCCcceEEECCCCHHHHHHHhcccCCCCCCCCceEEEEee
Confidence 43 6899999999999999865 4579999999999999985 455777754
No 58
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.50 E-value=1.9e-13 Score=126.57 Aligned_cols=74 Identities=22% Similarity=0.435 Sum_probs=66.6
Q ss_pred CCCcEEEEcCCcchH----------------------------HHHHHHHHhCCCccEEEEccccccCCCcCCC------
Q 048509 27 GGEKFIVFASSVANS----------------------------PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA------ 72 (168)
Q Consensus 27 ~~~~~iIF~~t~~~~----------------------------~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v------ 72 (168)
..++++|||+++..+ .+++++|+ +|+++|||||+++++|+|+|++
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~-~Gk~~ILVaT~iie~GIDIp~v~~VIi~ 737 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFY-KGEFQVLVCTTIIETGIDIPNANTIIIE 737 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHH-cCCCCEEEECChhhcccccccCCEEEEe
Confidence 356899999998877 88999999 9999999999999999999998
Q ss_pred ----CChhhHHhhhcccccCCCcceEEEEeeCC
Q 048509 73 ----AYIKTYIHRAGPRARAGQNGHCFTLLPKD 101 (168)
Q Consensus 73 ----~~~~~yihr~GR~gR~g~~g~~~~~~~~~ 101 (168)
....+|.||+||+||+|+.|.|++|+.+.
T Consensus 738 ~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 738 RADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred cCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 23578999999999999999999998654
No 59
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.49 E-value=1.5e-13 Score=97.86 Aligned_cols=93 Identities=31% Similarity=0.463 Sum_probs=78.5
Q ss_pred eEEEEEEcCCCCHHHHHHHHHhccC--CCcEEEEcCCcchH--------------------------HHHHHHHHhCCCc
Q 048509 3 VNLSPQICESKLKPIYLIPLLRNLG--GEKFIVFASSVANS--------------------------PKTLKAFRGKGHM 54 (168)
Q Consensus 3 l~~~~~~~~~~~K~~~L~~ll~~~~--~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~ 54 (168)
|.+.|...+ +.|...+..++.... ..++||||++...+ ..+++.|+ .+..
T Consensus 2 i~~~~~~~~-~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~~~ 79 (131)
T cd00079 2 IKQYVLPVE-DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFR-EGEI 79 (131)
T ss_pred cEEEEEECC-HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHH-cCCC
Confidence 344555433 379999999998764 67999999999977 77888999 9999
Q ss_pred cEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEE
Q 048509 55 QVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTL 97 (168)
Q Consensus 55 ~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~ 97 (168)
.||++|+++++|+|+|.+ .+...|+|++||++|.|+.|.++++
T Consensus 80 ~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 80 VVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cEEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999977 5578999999999999998887754
No 60
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.49 E-value=1.3e-13 Score=123.62 Aligned_cols=57 Identities=21% Similarity=0.433 Sum_probs=52.3
Q ss_pred HHHHHHHHhCCCccEEEEccccccCCCcCCC----------CChhhHHhhhcccccCCCcceEEEEee
Q 048509 42 PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA----------AYIKTYIHRAGPRARAGQNGHCFTLLP 99 (168)
Q Consensus 42 ~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v----------~~~~~yihr~GR~gR~g~~g~~~~~~~ 99 (168)
..++++|+ +|+.+|||||+++++|+|+|++ .....|.||+||+||.|.+|.|+++..
T Consensus 498 ~~i~~~F~-~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 498 EAVMEEFR-EGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred HHHHHHHH-cCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 88999999 9999999999999999999998 135677889999999999999999993
No 61
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.47 E-value=2.2e-13 Score=122.40 Aligned_cols=91 Identities=21% Similarity=0.294 Sum_probs=76.6
Q ss_pred CCCHHHHHHHHHhcc--CCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccEEEEcccc
Q 048509 12 SKLKPIYLIPLLRNL--GGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQVLVCSDAM 63 (168)
Q Consensus 12 ~~~K~~~L~~ll~~~--~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~iLvaTdv~ 63 (168)
...++..|..-|... ...++||||+|+..+ .+++++|+ .|++.|||||+++
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr-~G~i~VLV~t~~L 502 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLR-LGEFDVLVGINLL 502 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHh-cCCceEEEEcChh
Confidence 345666777777653 357899999999999 56778999 9999999999999
Q ss_pred ccCCCcCCC--------------CChhhHHhhhcccccCCCcceEEEEeeCCchh
Q 048509 64 TSGMDVERA--------------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDK 104 (168)
Q Consensus 64 ~rGlDi~~v--------------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~ 104 (168)
++|+|+|++ .+..+|+||+|||||. ..|.+++|++..+..
T Consensus 503 ~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~ 556 (655)
T TIGR00631 503 REGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDS 556 (655)
T ss_pred cCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHH
Confidence 999999999 2568999999999998 689999999977633
No 62
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.46 E-value=1.3e-13 Score=126.50 Aligned_cols=97 Identities=16% Similarity=0.269 Sum_probs=77.5
Q ss_pred eEEEEEEcCCCCHH-----HHHHHHHhccCCCcEEEEcCCcchH-----------------------------HHHHHHH
Q 048509 3 VNLSPQICESKLKP-----IYLIPLLRNLGGEKFIVFASSVANS-----------------------------PKTLKAF 48 (168)
Q Consensus 3 l~~~~~~~~~~~K~-----~~L~~ll~~~~~~~~iIF~~t~~~~-----------------------------~~~~~~F 48 (168)
|+++|..+...+++ ..+..++.. ..+++||||+++..+ .++++.|
T Consensus 180 Ve~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~ 258 (819)
T TIGR01970 180 VEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPD 258 (819)
T ss_pred eeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhc
Confidence 56677766655553 344555544 357899999998877 6788899
Q ss_pred HhCCCccEEEEccccccCCCcCCCC-------------Ch--------------hhHHhhhcccccCCCcceEEEEeeCC
Q 048509 49 RGKGHMQVLVCSDAMTSGMDVERAA-------------YI--------------KTYIHRAGPRARAGQNGHCFTLLPKD 101 (168)
Q Consensus 49 ~~~~~~~iLvaTdv~~rGlDi~~v~-------------~~--------------~~yihr~GR~gR~g~~g~~~~~~~~~ 101 (168)
+ +|+.+||||||++++|||||+|. ++ .+|+||+||+||. .+|.||.|+++.
T Consensus 259 ~-~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~ 336 (819)
T TIGR01970 259 P-QGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEE 336 (819)
T ss_pred c-cCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHH
Confidence 9 99999999999999999999991 11 4589999999999 899999999876
Q ss_pred c
Q 048509 102 E 102 (168)
Q Consensus 102 ~ 102 (168)
+
T Consensus 337 ~ 337 (819)
T TIGR01970 337 Q 337 (819)
T ss_pred H
Confidence 6
No 63
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.45 E-value=1.6e-13 Score=124.40 Aligned_cols=97 Identities=13% Similarity=0.134 Sum_probs=78.0
Q ss_pred EEcCCCCHHHHHHHHHhcc--CCCcEEEEcCCcchH------------------------HHHHHHHHhCCCccEEEEcc
Q 048509 8 QICESKLKPIYLIPLLRNL--GGEKFIVFASSVANS------------------------PKTLKAFRGKGHMQVLVCSD 61 (168)
Q Consensus 8 ~~~~~~~K~~~L~~ll~~~--~~~~~iIF~~t~~~~------------------------~~~~~~F~~~~~~~iLvaTd 61 (168)
++....+|...|.+.+... ...|+||||+|+..+ +..+-.+. -..-.|+||||
T Consensus 418 i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~a-g~~g~VtIATn 496 (796)
T PRK12906 418 LYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNA-GQRGAVTIATN 496 (796)
T ss_pred EEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhc-CCCceEEEEec
Confidence 4455677899999998644 578999999999998 33344444 44555999999
Q ss_pred ccccCCCcC---CC--------------CChhhHHhhhcccccCCCcceEEEEeeCCchhH
Q 048509 62 AMTSGMDVE---RA--------------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKL 105 (168)
Q Consensus 62 v~~rGlDi~---~v--------------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~ 105 (168)
+|+||+||+ +| .+...|.|+.|||||.|.+|.+..|++.+|+-.
T Consensus 497 mAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~l~ 557 (796)
T PRK12906 497 MAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLM 557 (796)
T ss_pred cccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccchHH
Confidence 999999995 44 567999999999999999999999999887443
No 64
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.45 E-value=1.1e-13 Score=126.95 Aligned_cols=97 Identities=20% Similarity=0.306 Sum_probs=78.6
Q ss_pred eEEEEEEcCCCCHHH-----HHHHHHhccCCCcEEEEcCCcchH-----------------------------HHHHHHH
Q 048509 3 VNLSPQICESKLKPI-----YLIPLLRNLGGEKFIVFASSVANS-----------------------------PKTLKAF 48 (168)
Q Consensus 3 l~~~~~~~~~~~K~~-----~L~~ll~~~~~~~~iIF~~t~~~~-----------------------------~~~~~~F 48 (168)
++++|+.++..++.. .|..++.. ..+.+||||++...+ .++++.|
T Consensus 183 V~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~ 261 (812)
T PRK11664 183 VERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPA 261 (812)
T ss_pred ceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccc
Confidence 567777776666654 45555543 357899999998887 6678889
Q ss_pred HhCCCccEEEEccccccCCCcCCCCC---------------------------hhhHHhhhcccccCCCcceEEEEeeCC
Q 048509 49 RGKGHMQVLVCSDAMTSGMDVERAAY---------------------------IKTYIHRAGPRARAGQNGHCFTLLPKD 101 (168)
Q Consensus 49 ~~~~~~~iLvaTdv~~rGlDi~~v~~---------------------------~~~yihr~GR~gR~g~~g~~~~~~~~~ 101 (168)
+ +|+.+||||||++++|||||+|.. -.+|+||+||+||. .+|.||.|+++.
T Consensus 262 ~-~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~ 339 (812)
T PRK11664 262 P-AGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKE 339 (812)
T ss_pred c-CCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHH
Confidence 9 999999999999999999999911 14799999999998 699999999876
Q ss_pred c
Q 048509 102 E 102 (168)
Q Consensus 102 ~ 102 (168)
+
T Consensus 340 ~ 340 (812)
T PRK11664 340 Q 340 (812)
T ss_pred H
Confidence 6
No 65
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.41 E-value=8.5e-13 Score=116.39 Aligned_cols=79 Identities=18% Similarity=0.333 Sum_probs=72.9
Q ss_pred cCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccEEEEccccccCCCcCCC-------
Q 048509 26 LGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA------- 72 (168)
Q Consensus 26 ~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v------- 72 (168)
....+.||||.|+..| ..+.++|. .+++.|+|||..+++|||.|+|
T Consensus 228 ~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~-~~~~~iiVAT~AFGMGIdKpdVRfViH~~ 306 (590)
T COG0514 228 QLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFL-NDEIKVMVATNAFGMGIDKPDVRFVIHYD 306 (590)
T ss_pred ccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHh-cCCCcEEEEeccccCccCCCCceEEEEec
Confidence 3456799999999999 78888999 9999999999999999999999
Q ss_pred --CChhhHHhhhcccccCCCcceEEEEeeCCchhH
Q 048509 73 --AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKL 105 (168)
Q Consensus 73 --~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~ 105 (168)
.++++|.|-+||+||.|.+..|++|+.+.|..+
T Consensus 307 lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~ 341 (590)
T COG0514 307 LPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRW 341 (590)
T ss_pred CCCCHHHHHHHHhhccCCCCcceEEEeeccccHHH
Confidence 778999999999999999999999999999543
No 66
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.40 E-value=1.8e-12 Score=117.09 Aligned_cols=101 Identities=23% Similarity=0.319 Sum_probs=82.4
Q ss_pred CCCHHHHHHHHHhcc--CCCcEEEEcCCcchH---------------------HHHHHHHHhCC-CccEEEEccccccCC
Q 048509 12 SKLKPIYLIPLLRNL--GGEKFIVFASSVANS---------------------PKTLKAFRGKG-HMQVLVCSDAMTSGM 67 (168)
Q Consensus 12 ~~~K~~~L~~ll~~~--~~~~~iIF~~t~~~~---------------------~~~~~~F~~~~-~~~iLvaTdv~~rGl 67 (168)
...|+..+..+++.+ ...++||||++...+ .+++++|+ .+ .+++||+|+++.+|+
T Consensus 478 np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~~~~I~G~ts~~ER~~il~~Fr-~~~~i~vLv~SkVgdeGI 556 (732)
T TIGR00603 478 NPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQQERMQILQNFQ-HNPKVNTIFLSKVGDTSI 556 (732)
T ss_pred ChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcCCceEECCCCHHHHHHHHHHHH-hCCCccEEEEeccccccc
Confidence 345777777788765 567999999998777 89999999 75 889999999999999
Q ss_pred CcCCC----------CChhhHHhhhcccccCCCcceE-------EEEeeCCchhHHHHHHHHH
Q 048509 68 DVERA----------AYIKTYIHRAGPRARAGQNGHC-------FTLLPKDEDKLLYMFQVKR 113 (168)
Q Consensus 68 Di~~v----------~~~~~yihr~GR~gR~g~~g~~-------~~~~~~~~~~~~~~~~~~~ 113 (168)
|+|++ .+...|+||+||++|.+..|.+ ++|+++.+....|......
T Consensus 557 DlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~ 619 (732)
T TIGR00603 557 DLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQR 619 (732)
T ss_pred CCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHH
Confidence 99999 3579999999999999877765 8999887766655433333
No 67
>PRK02362 ski2-like helicase; Provisional
Probab=99.39 E-value=2.4e-12 Score=117.24 Aligned_cols=60 Identities=20% Similarity=0.360 Sum_probs=51.1
Q ss_pred HHHHHHHHhCCCccEEEEccccccCCCcCCC------------------CChhhHHhhhcccccCCCc--ceEEEEeeCC
Q 048509 42 PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA------------------AYIKTYIHRAGPRARAGQN--GHCFTLLPKD 101 (168)
Q Consensus 42 ~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v------------------~~~~~yihr~GR~gR~g~~--g~~~~~~~~~ 101 (168)
..+.+.|+ +|.++|||||+.+++|+|+|.+ -++.+|+||+||+||.|.. |.+++++.+.
T Consensus 319 ~~ve~~Fr-~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 319 ELVEDAFR-DRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred HHHHHHHH-cCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 34667799 9999999999999999999997 1247899999999999854 9999998765
Q ss_pred c
Q 048509 102 E 102 (168)
Q Consensus 102 ~ 102 (168)
+
T Consensus 398 ~ 398 (737)
T PRK02362 398 D 398 (737)
T ss_pred h
Confidence 4
No 68
>PRK13766 Hef nuclease; Provisional
Probab=99.37 E-value=5.7e-12 Score=115.17 Aligned_cols=90 Identities=23% Similarity=0.353 Sum_probs=77.1
Q ss_pred CCCCHHHHHHHHHhc----cCCCcEEEEcCCcchH----------------------------------HHHHHHHHhCC
Q 048509 11 ESKLKPIYLIPLLRN----LGGEKFIVFASSVANS----------------------------------PKTLKAFRGKG 52 (168)
Q Consensus 11 ~~~~K~~~L~~ll~~----~~~~~~iIF~~t~~~~----------------------------------~~~~~~F~~~~ 52 (168)
....|...|.++|++ ....++||||+++.+| .+++++|+ ++
T Consensus 344 ~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~-~g 422 (773)
T PRK13766 344 IEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFR-AG 422 (773)
T ss_pred cCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHH-cC
Confidence 346799999999976 4567999999999988 35788999 99
Q ss_pred CccEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCc
Q 048509 53 HMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDE 102 (168)
Q Consensus 53 ~~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~ 102 (168)
+.+|||||+++++|+|+|.+ .+...|+||+||+||.|. |.++.++....
T Consensus 423 ~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 423 EFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred CCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCC
Confidence 99999999999999999999 567889999999999865 88888887443
No 69
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.35 E-value=1.7e-12 Score=109.25 Aligned_cols=83 Identities=18% Similarity=0.246 Sum_probs=59.1
Q ss_pred eEEEEEEcCCCCHHHHHHHHHhc-------cCCCcEEEEcCCcchHHHHHHHHHh---------------------CCCc
Q 048509 3 VNLSPQICESKLKPIYLIPLLRN-------LGGEKFIVFASSVANSPKTLKAFRG---------------------KGHM 54 (168)
Q Consensus 3 l~~~~~~~~~~~K~~~L~~ll~~-------~~~~~~iIF~~t~~~~~~~~~~F~~---------------------~~~~ 54 (168)
+.+.++. ....|...+..+++. ..+.++||||+|+..|+.+.+.++. .++.
T Consensus 241 i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~~~ 319 (357)
T TIGR03158 241 VELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAMQF 319 (357)
T ss_pred eEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhccC
Confidence 3444444 444555544444332 2457999999999999444444431 3357
Q ss_pred cEEEEccccccCCCcCCC------CChhhHHhhhcccc
Q 048509 55 QVLVCSDAMTSGMDVERA------AYIKTYIHRAGPRA 86 (168)
Q Consensus 55 ~iLvaTdv~~rGlDi~~v------~~~~~yihr~GR~g 86 (168)
+||||||+++||+|++.+ .++++|+||+||||
T Consensus 320 ~iLVaTdv~~rGiDi~~~~vi~~p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 320 DILLGTSTVDVGVDFKRDWLIFSARDAAAFWQRLGRLG 357 (357)
T ss_pred CEEEEecHHhcccCCCCceEEECCCCHHHHhhhcccCC
Confidence 999999999999999887 67899999999997
No 70
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.35 E-value=3.9e-12 Score=121.83 Aligned_cols=93 Identities=15% Similarity=0.223 Sum_probs=62.8
Q ss_pred HHHHHHhCCCccEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHH
Q 048509 44 TLKAFRGKGHMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRF 114 (168)
Q Consensus 44 ~~~~F~~~~~~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~ 114 (168)
+.+.|+ +|++++||||+.+++|||+++| .++.+|+||+||+||. ..|.+..++.+.+...+ ...
T Consensus 319 IE~~fK-~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~-~gg~s~gli~p~~r~dl----le~- 391 (1490)
T PRK09751 319 TEQALK-SGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ-VGGVSKGLFFPRTRRDL----VDS- 391 (1490)
T ss_pred HHHHHH-hCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC-CCCccEEEEEeCcHHHH----Hhh-
Confidence 447799 9999999999999999999988 6789999999999996 33444444444442111 111
Q ss_pred HHHHHHhCCCCCCCcCCChhhHhhhhhhh
Q 048509 115 KKLLQQADHDSCPVHSIPSSSIESLRPIY 143 (168)
Q Consensus 115 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (168)
..+.+.+-...++....|....+-+....
T Consensus 392 ~~~ve~~l~g~iE~~~~p~nplDVLaqqi 420 (1490)
T PRK09751 392 AVIVECMFAGRLENLTPPHNPLDVLAQQT 420 (1490)
T ss_pred HHHHHHHhcCCCCccCCCCChHHHHHHHH
Confidence 12344444556666777766665554443
No 71
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.31 E-value=6.3e-12 Score=82.95 Aligned_cols=47 Identities=34% Similarity=0.618 Sum_probs=44.6
Q ss_pred HHHHHHHHhCCCccEEEEccccccCCCcCCC---------CChhhHHhhhcccccCC
Q 048509 42 PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAG 89 (168)
Q Consensus 42 ~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g 89 (168)
..+++.|+ +++..|||||+++++|+|+|.+ .++..|+|++||+||.|
T Consensus 23 ~~~~~~f~-~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 23 QEILKKFN-SGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHHHH-TTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred HHHHHHhh-ccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 89999999 9999999999999999999998 66899999999999986
No 72
>PRK00254 ski2-like helicase; Provisional
Probab=99.30 E-value=1.8e-11 Score=111.42 Aligned_cols=60 Identities=17% Similarity=0.323 Sum_probs=51.1
Q ss_pred HHHHHHHHhCCCccEEEEccccccCCCcCCC----C-------------ChhhHHhhhcccccCC--CcceEEEEeeCCc
Q 048509 42 PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA----A-------------YIKTYIHRAGPRARAG--QNGHCFTLLPKDE 102 (168)
Q Consensus 42 ~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v----~-------------~~~~yihr~GR~gR~g--~~g~~~~~~~~~~ 102 (168)
..+.+.|+ +|.++|||||+.+++|+|+|.+ . .+.+|.||+||+||.| ..|.+++++.+.+
T Consensus 311 ~~ve~~F~-~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 311 VLIEDAFR-EGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HHHHHHHH-CCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 44557899 9999999999999999999987 1 2468999999999965 7899999988655
No 73
>PRK01172 ski2-like helicase; Provisional
Probab=99.25 E-value=2.4e-11 Score=109.77 Aligned_cols=60 Identities=17% Similarity=0.252 Sum_probs=49.5
Q ss_pred HHHHHHHHhCCCccEEEEccccccCCCcCCC-----------------CChhhHHhhhcccccCC--CcceEEEEeeCCc
Q 048509 42 PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA-----------------AYIKTYIHRAGPRARAG--QNGHCFTLLPKDE 102 (168)
Q Consensus 42 ~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v-----------------~~~~~yihr~GR~gR~g--~~g~~~~~~~~~~ 102 (168)
..+.+.|+ +|.++|||||+++++|+|+|.. -++.+|.||+||+||.| ..|.+++++.+.+
T Consensus 301 ~~ve~~f~-~g~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~ 379 (674)
T PRK01172 301 RFIEEMFR-NRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA 379 (674)
T ss_pred HHHHHHHH-cCCCeEEEecchhhccCCCcceEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc
Confidence 34567899 9999999999999999999975 13568899999999998 4677888876443
No 74
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.23 E-value=2.5e-11 Score=114.88 Aligned_cols=76 Identities=16% Similarity=0.340 Sum_probs=60.6
Q ss_pred cCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccEEEEccccccCCCcCCC----C--
Q 048509 26 LGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA----A-- 73 (168)
Q Consensus 26 ~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v----~-- 73 (168)
..++.+||||+++..+ .+..+-|...+..+||||||++++|||||+| +
T Consensus 284 ~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~g~rkIIVATNIAEtSITIpgI~yVID~G 363 (1294)
T PRK11131 284 EGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPG 363 (1294)
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcccCCeeEEEeccHHhhccccCcceEEEECC
Confidence 3467899999999887 1222233324567999999999999999998 1
Q ss_pred ---------------------ChhhHHhhhcccccCCCcceEEEEeeCCc
Q 048509 74 ---------------------YIKTYIHRAGPRARAGQNGHCFTLLPKDE 102 (168)
Q Consensus 74 ---------------------~~~~yihr~GR~gR~g~~g~~~~~~~~~~ 102 (168)
+-.+|.||+||+||. .+|.||.|+++.+
T Consensus 364 l~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d 412 (1294)
T PRK11131 364 TARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDD 412 (1294)
T ss_pred CccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHH
Confidence 126899999999999 7999999999766
No 75
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.17 E-value=1.6e-10 Score=102.64 Aligned_cols=86 Identities=20% Similarity=0.387 Sum_probs=69.4
Q ss_pred HHHHHHHHhCCCccEEEEccccccCCCcCCC-----CChhhH----Hhhh-cccccCCCcceEEEEeeCCchhHHHHHHH
Q 048509 42 PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA-----AYIKTY----IHRA-GPRARAGQNGHCFTLLPKDEDKLLYMFQV 111 (168)
Q Consensus 42 ~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v-----~~~~~y----ihr~-GR~gR~g~~g~~~~~~~~~~~~~~~~~~~ 111 (168)
+++|++|+ +|+++|||||.|.+-|+|+|+. .+++.| +|.. ||+||.+.++.|++++.+.....- .
T Consensus 523 d~vM~~Fk-~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a----~ 597 (677)
T COG1200 523 DAVMEAFK-EGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVA----K 597 (677)
T ss_pred HHHHHHHH-cCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhH----H
Confidence 99999999 9999999999999999999998 666555 4544 999999999999999987763221 4
Q ss_pred HHHHHHHHHhCCCCCCCcCCC
Q 048509 112 KRFKKLLQQADHDSCPVHSIP 132 (168)
Q Consensus 112 ~~~~~i~~~~~~~~~~~~~~~ 132 (168)
..+..+.+..++..+.+.++.
T Consensus 598 ~RL~im~~t~DGF~IAE~DLk 618 (677)
T COG1200 598 QRLKIMRETTDGFVIAEEDLK 618 (677)
T ss_pred HHHHHHHhcCCcceehhhhHh
Confidence 677777777777666555543
No 76
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.16 E-value=1.5e-10 Score=101.62 Aligned_cols=57 Identities=18% Similarity=0.293 Sum_probs=50.0
Q ss_pred HHHHHHHHhCCCccEEEEccccccCCCcCCCC--------------C-------hhhHHhhhcccccCCCcceEEEEee
Q 048509 42 PKTLKAFRGKGHMQVLVCSDAMTSGMDVERAA--------------Y-------IKTYIHRAGPRARAGQNGHCFTLLP 99 (168)
Q Consensus 42 ~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v~--------------~-------~~~yihr~GR~gR~g~~g~~~~~~~ 99 (168)
++++++|+ +|+.+|||+|+++++|+|+|+|. + .+.|+|++||+||++..|.++....
T Consensus 302 ~~~l~~f~-~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~ 379 (505)
T TIGR00595 302 EALLNQFA-NGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTY 379 (505)
T ss_pred HHHHHHHh-cCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeC
Confidence 57899999 99999999999999999999881 1 3678999999999999999886553
No 77
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.15 E-value=7.6e-11 Score=103.27 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcc--CCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccEEEEc-ccccc
Q 048509 15 KPIYLIPLLRNL--GGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQVLVCS-DAMTS 65 (168)
Q Consensus 15 K~~~L~~ll~~~--~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~iLvaT-dv~~r 65 (168)
+...+..++... ...+++|||++.+++ ..+++.|+ .++..||||| +++++
T Consensus 329 Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~-~~~~~vLvaT~~~l~e 407 (501)
T PHA02558 329 RNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAE-GGKGIIIVASYGVFST 407 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHh-CCCCeEEEEEcceecc
Confidence 444555554433 245777777777777 66788899 9999999998 99999
Q ss_pred CCCcCCC---------CChhhHHhhhcccccCCCcceEEEEe
Q 048509 66 GMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLL 98 (168)
Q Consensus 66 GlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~ 98 (168)
|+|+|++ .+...|+||+||++|.+..+....++
T Consensus 408 G~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 408 GISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred ccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 9999998 55678999999999987655444444
No 78
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.15 E-value=2.6e-10 Score=103.95 Aligned_cols=121 Identities=13% Similarity=0.266 Sum_probs=94.6
Q ss_pred HHHHHHHHHhccCCCcEEEEcCCcchH---------------------------HHHHHHHHhCCCccEEEEccccccCC
Q 048509 15 KPIYLIPLLRNLGGEKFIVFASSVANS---------------------------PKTLKAFRGKGHMQVLVCSDAMTSGM 67 (168)
Q Consensus 15 K~~~L~~ll~~~~~~~~iIF~~t~~~~---------------------------~~~~~~F~~~~~~~iLvaTdv~~rGl 67 (168)
-...+.++++++. .++||+||+..| ..+-++|+ +|+++++|||+.++-||
T Consensus 242 ~~~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk-~G~lravV~TSSLELGI 318 (814)
T COG1201 242 LYERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLK-EGELKAVVATSSLELGI 318 (814)
T ss_pred HHHHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHh-cCCceEEEEccchhhcc
Confidence 3456666666655 899999999999 78888999 99999999999999999
Q ss_pred CcCCC---------CChhhHHhhhcccc-cCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCCCCCCCcCCChhhHh
Q 048509 68 DVERA---------AYIKTYIHRAGPRA-RAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSCPVHSIPSSSIE 137 (168)
Q Consensus 68 Di~~v---------~~~~~yihr~GR~g-R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 137 (168)
|+.+| .++...+||+||+| |.+....++.+....++ .-+...+.+.+....++..++|...++
T Consensus 319 DiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~d-------llE~~vi~~~a~~g~le~~~i~~~~LD 391 (814)
T COG1201 319 DIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDD-------LLECLVLADLALEGKLERIKIPKNPLD 391 (814)
T ss_pred ccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCHHH-------HHHHHHHHHHHHhCCcccCCCCCcchh
Confidence 99999 55789999999999 56777777888766442 234455566666667777888887777
Q ss_pred hhhhhhhh
Q 048509 138 SLRPIYKS 145 (168)
Q Consensus 138 ~~~~~~~~ 145 (168)
-+.+..-.
T Consensus 392 VLaq~ivg 399 (814)
T COG1201 392 VLAQQIVG 399 (814)
T ss_pred HHHHHHHH
Confidence 76655544
No 79
>PRK09401 reverse gyrase; Reviewed
Probab=99.09 E-value=2.1e-10 Score=108.78 Aligned_cols=82 Identities=18% Similarity=0.192 Sum_probs=69.3
Q ss_pred ceEEEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcch---H---------------------HHHHHHHHhCCCccEE
Q 048509 2 SVNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVAN---S---------------------PKTLKAFRGKGHMQVL 57 (168)
Q Consensus 2 ~l~~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~---~---------------------~~~~~~F~~~~~~~iL 57 (168)
+|.|.|+.++ +|...|..+++... .++||||+|+.. | .+.+++|+ +|+++||
T Consensus 305 nI~~~yi~~~--~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l~~~l~~F~-~G~~~VL 380 (1176)
T PRK09401 305 NIVDSYIVDE--DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGFERKFEKFE-EGEVDVL 380 (1176)
T ss_pred CceEEEEEcc--cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcHHHHHHHHH-CCCCCEE
Confidence 3677787766 78888999998765 589999999887 5 47789999 9999999
Q ss_pred EE----ccccccCCCcCC-C---------------CChhhHHhhhccccc
Q 048509 58 VC----SDAMTSGMDVER-A---------------AYIKTYIHRAGPRAR 87 (168)
Q Consensus 58 va----Tdv~~rGlDi~~-v---------------~~~~~yihr~GR~gR 87 (168)
|| ||+++||||+|+ | ...+.|.||+||+..
T Consensus 381 Vatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 381 VGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred EEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 99 699999999999 4 235889999999863
No 80
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.09 E-value=6.6e-10 Score=101.56 Aligned_cols=114 Identities=17% Similarity=0.180 Sum_probs=86.0
Q ss_pred EEcCCCCHHHHHHHHHhc--cCCCcEEEEcCCcchH------------------------HHHHHHHHhCCCccEEEEcc
Q 048509 8 QICESKLKPIYLIPLLRN--LGGEKFIVFASSVANS------------------------PKTLKAFRGKGHMQVLVCSD 61 (168)
Q Consensus 8 ~~~~~~~K~~~L~~ll~~--~~~~~~iIF~~t~~~~------------------------~~~~~~F~~~~~~~iLvaTd 61 (168)
++....+|..+|...+.. ....|+||||+|...+ +..+.+|+ .+...|+||||
T Consensus 408 i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnakq~eREa~Iia~A-g~~g~VtIATN 486 (830)
T PRK12904 408 IYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAKNHEREAEIIAQA-GRPGAVTIATN 486 (830)
T ss_pred EEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCchHHHHHHHHHhc-CCCceEEEecc
Confidence 445667899999999976 4578999999999998 78889999 99999999999
Q ss_pred ccccCCCcCCC-----------------------------------------------CChhhHHhhhcccccCCCcceE
Q 048509 62 AMTSGMDVERA-----------------------------------------------AYIKTYIHRAGPRARAGQNGHC 94 (168)
Q Consensus 62 v~~rGlDi~~v-----------------------------------------------~~~~~yihr~GR~gR~g~~g~~ 94 (168)
+|+||+||+-= .+-.-=-|-.||+||-|.+|.+
T Consensus 487 mAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss 566 (830)
T PRK12904 487 MAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSS 566 (830)
T ss_pred cccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCce
Confidence 99999998852 1112224667999999999999
Q ss_pred EEEeeCCchhHHHHHHHHHHHHHHHHhCC
Q 048509 95 FTLLPKDEDKLLYMFQVKRFKKLLQQADH 123 (168)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (168)
-.|++-+|+-.- .+--..+..++..++.
T Consensus 567 ~f~lSleD~l~~-~f~~~~~~~~~~~~~~ 594 (830)
T PRK12904 567 RFYLSLEDDLMR-IFGSDRVKGMMDRLGM 594 (830)
T ss_pred eEEEEcCcHHHH-hhchHHHHHHHHHcCC
Confidence 999997774431 1112344455555543
No 81
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.09 E-value=6e-10 Score=103.20 Aligned_cols=107 Identities=17% Similarity=0.276 Sum_probs=85.9
Q ss_pred EEEEcCCC--CHHHHHHHHHhc-cCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccE
Q 048509 6 SPQICESK--LKPIYLIPLLRN-LGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQV 56 (168)
Q Consensus 6 ~~~~~~~~--~K~~~L~~ll~~-~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~i 56 (168)
+|-+.... +....+...++. +.....||||.++..| ..+.++|- .++++|
T Consensus 460 ~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~-~~~~~V 538 (941)
T KOG0351|consen 460 KYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWM-SDKIRV 538 (941)
T ss_pred eEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHh-cCCCeE
Confidence 44444433 333333333333 3467999999999999 88899999 999999
Q ss_pred EEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHh
Q 048509 57 LVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQA 121 (168)
Q Consensus 57 LvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 121 (168)
+|||=++++|||.|+| .+++.|.|-+||+||.|....|++|+...| ...++.++..-
T Consensus 539 ivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D--------~~~l~~ll~s~ 604 (941)
T KOG0351|consen 539 IVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYAD--------ISELRRLLTSG 604 (941)
T ss_pred EEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhH--------HHHHHHHHHcc
Confidence 9999999999999999 778999999999999999999999999998 56666665543
No 82
>PRK14701 reverse gyrase; Provisional
Probab=99.08 E-value=1.2e-10 Score=112.96 Aligned_cols=98 Identities=14% Similarity=0.157 Sum_probs=75.8
Q ss_pred ceEEEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH------------------------HHHHHHHHhCCCccEE
Q 048509 2 SVNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS------------------------PKTLKAFRGKGHMQVL 57 (168)
Q Consensus 2 ~l~~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~------------------------~~~~~~F~~~~~~~iL 57 (168)
.+.|.|+.++..+| ..|..+++.. ...+||||+|+..+ .+++++|+ +|+++||
T Consensus 306 ~i~~~yi~~~~~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~R~~~l~~F~-~G~~~VL 382 (1638)
T PRK14701 306 NIVDVYLNPEKIIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAKNKKGFDLFE-EGEIDYL 382 (1638)
T ss_pred CcEEEEEECCHHHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecchHHHHHHHHH-cCCCCEE
Confidence 36778887766655 5788888876 46899999998742 78999999 9999999
Q ss_pred EEc----cccccCCCcCC-C---------C---ChhhHHhh-------------hcccccCCCcceEEEEeeCCc
Q 048509 58 VCS----DAMTSGMDVER-A---------A---YIKTYIHR-------------AGPRARAGQNGHCFTLLPKDE 102 (168)
Q Consensus 58 vaT----dv~~rGlDi~~-v---------~---~~~~yihr-------------~GR~gR~g~~g~~~~~~~~~~ 102 (168)
||| |+++||||+|+ | . +++.|.|. .||+||.|.++.+++...+++
T Consensus 383 VaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~ 457 (1638)
T PRK14701 383 IGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPED 457 (1638)
T ss_pred EEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHH
Confidence 999 59999999999 4 1 34545444 499999998877775544444
No 83
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.06 E-value=1.4e-09 Score=103.26 Aligned_cols=66 Identities=21% Similarity=0.300 Sum_probs=53.7
Q ss_pred ceEEEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCc---chH----------------------HHHHHHHHhCCCccE
Q 048509 2 SVNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSV---ANS----------------------PKTLKAFRGKGHMQV 56 (168)
Q Consensus 2 ~l~~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~---~~~----------------------~~~~~~F~~~~~~~i 56 (168)
+|.+.|+.++. +...|..+++... .++||||+|+ ..| ++++++|+ +|+++|
T Consensus 303 ~I~~~~~~~~~--~~~~L~~ll~~l~-~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~~~l~~Fr-~G~~~v 378 (1171)
T TIGR01054 303 NVVDVYVEDED--LKETLLEIVKKLG-TGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPKEDYEKFA-EGEIDV 378 (1171)
T ss_pred ceEEEEEeccc--HHHHHHHHHHHcC-CCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCHHHHHHHH-cCCCCE
Confidence 35666665443 3567788887664 5899999999 666 78999999 999999
Q ss_pred EEE----ccccccCCCcCC
Q 048509 57 LVC----SDAMTSGMDVER 71 (168)
Q Consensus 57 Lva----Tdv~~rGlDi~~ 71 (168)
||| ||+++||||+|+
T Consensus 379 LVata~~tdv~aRGIDip~ 397 (1171)
T TIGR01054 379 LIGVASYYGTLVRGLDLPE 397 (1171)
T ss_pred EEEeccccCcccccCCCCc
Confidence 999 599999999998
No 84
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.05 E-value=4.9e-10 Score=106.43 Aligned_cols=87 Identities=11% Similarity=0.246 Sum_probs=65.0
Q ss_pred HHHHHHHHHhc---cCCCcEEEEcCCcchH--------------------------HHHHHHHHhCC-CccEEEEccccc
Q 048509 15 KPIYLIPLLRN---LGGEKFIVFASSVANS--------------------------PKTLKAFRGKG-HMQVLVCSDAMT 64 (168)
Q Consensus 15 K~~~L~~ll~~---~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~-~~~iLvaTdv~~ 64 (168)
+...+...+.. ..++.+|||+++...+ .+-.+-|+ .. ..+|+||||+++
T Consensus 263 ~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~-~~~~rkIVLATNIAE 341 (1283)
T TIGR01967 263 QLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQ-PHSGRRIVLATNVAE 341 (1283)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhC-CCCCceEEEeccHHH
Confidence 44444444432 2457999999999888 22222344 33 369999999999
Q ss_pred cCCCcCCCC---------------------------ChhhHHhhhcccccCCCcceEEEEeeCCch
Q 048509 65 SGMDVERAA---------------------------YIKTYIHRAGPRARAGQNGHCFTLLPKDED 103 (168)
Q Consensus 65 rGlDi~~v~---------------------------~~~~yihr~GR~gR~g~~g~~~~~~~~~~~ 103 (168)
+|||||+|. +-.+|.||+||+||.+ +|.||.|+++++.
T Consensus 342 tSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 342 TSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred hccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 999999990 1268999999999997 9999999987663
No 85
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.04 E-value=6.2e-10 Score=97.45 Aligned_cols=97 Identities=18% Similarity=0.276 Sum_probs=83.5
Q ss_pred EEEEEcC-CCCHHHHHHHHHhcc-------C-CCcEEEEcCCcchH--------------------------HHHHHHHH
Q 048509 5 LSPQICE-SKLKPIYLIPLLRNL-------G-GEKFIVFASSVANS--------------------------PKTLKAFR 49 (168)
Q Consensus 5 ~~~~~~~-~~~K~~~L~~ll~~~-------~-~~~~iIF~~t~~~~--------------------------~~~~~~F~ 49 (168)
-+.++|. +.+|.+.+..|.+.. . .+++|||++|+..| ..+-..|.
T Consensus 408 rHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~ 487 (830)
T COG1202 408 RHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFA 487 (830)
T ss_pred HeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHh
Confidence 4566666 889999999998732 1 36999999999999 67777999
Q ss_pred hCCCccEEEEccccccCCCcCCC-------------CChhhHHhhhcccccCC--CcceEEEEeeCCc
Q 048509 50 GKGHMQVLVCSDAMTSGMDVERA-------------AYIKTYIHRAGPRARAG--QNGHCFTLLPKDE 102 (168)
Q Consensus 50 ~~~~~~iLvaTdv~~rGlDi~~v-------------~~~~~yihr~GR~gR~g--~~g~~~~~~~~~~ 102 (168)
.+++.++|+|-.++-|+|+|.- -++..|.|++||+||-+ ..|.+++++.|.-
T Consensus 488 -~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~ 554 (830)
T COG1202 488 -AQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGK 554 (830)
T ss_pred -cCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCCh
Confidence 9999999999999999999987 56899999999999977 7899999997654
No 86
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.98 E-value=1.9e-09 Score=70.41 Aligned_cols=69 Identities=32% Similarity=0.538 Sum_probs=52.3
Q ss_pred HHHHHhccCCCcEEEEcCCcchH--HHHHHHHHhCCCccEEEEccccccCCCcCCC---------CChhhHHhhhccccc
Q 048509 19 LIPLLRNLGGEKFIVFASSVANS--PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRAR 87 (168)
Q Consensus 19 L~~ll~~~~~~~~iIF~~t~~~~--~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR 87 (168)
|...|+.... ++.++-...... ..+++.|. .+...|||+|++++.|+|+|.+ .+...|.|++||++|
T Consensus 3 l~~~l~~~~~-~~~~~~~~~~~~~r~~~~~~f~-~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R 80 (82)
T smart00490 3 LAELLKELGI-KVARLHGGLSQEEREEILEKFN-NGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGR 80 (82)
T ss_pred HHHHHHHCCC-eEEEEECCCCHHHHHHHHHHHH-cCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccccc
Confidence 4455554432 344443322222 78999999 9999999999999999999987 567899999999999
Q ss_pred CC
Q 048509 88 AG 89 (168)
Q Consensus 88 ~g 89 (168)
.|
T Consensus 81 ~g 82 (82)
T smart00490 81 AG 82 (82)
T ss_pred CC
Confidence 75
No 87
>PRK05580 primosome assembly protein PriA; Validated
Probab=98.96 E-value=2.4e-09 Score=97.05 Aligned_cols=87 Identities=20% Similarity=0.206 Sum_probs=65.9
Q ss_pred HHHHHHHHHhccCCCcEEEEcCCc-----chHHHHHHHHHhCCCccEEEEccccccCCCcCCCC----------------
Q 048509 15 KPIYLIPLLRNLGGEKFIVFASSV-----ANSPKTLKAFRGKGHMQVLVCSDAMTSGMDVERAA---------------- 73 (168)
Q Consensus 15 K~~~L~~ll~~~~~~~~iIF~~t~-----~~~~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v~---------------- 73 (168)
-.+.+.+.|...-++.-+...... ..-++++++|+ +|+.+|||+|+++++|+|+|+|.
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~-~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdf 516 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFA-RGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDF 516 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHh-cCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCcc
Confidence 346677777766443333343322 22388999999 99999999999999999999981
Q ss_pred -----ChhhHHhhhcccccCCCcceEEEEeeCCc
Q 048509 74 -----YIKTYIHRAGPRARAGQNGHCFTLLPKDE 102 (168)
Q Consensus 74 -----~~~~yihr~GR~gR~g~~g~~~~~~~~~~ 102 (168)
..+.|+|++||+||++..|.++......+
T Consensus 517 ra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 517 RASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred chHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCC
Confidence 12678999999999999999997765444
No 88
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=98.92 E-value=4.9e-09 Score=89.27 Aligned_cols=89 Identities=15% Similarity=0.287 Sum_probs=76.8
Q ss_pred CcEEEEcCCcchH--------------------------HHHHHHHHhCCCccEEEEccccccCCCcCCC---------C
Q 048509 29 EKFIVFASSVANS--------------------------PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA---------A 73 (168)
Q Consensus 29 ~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v---------~ 73 (168)
+..||||+|++.| ..+.+++. ++++.|++||..+++|+|-|+| .
T Consensus 256 GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM-~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~q 334 (641)
T KOG0352|consen 256 GCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWM-NNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQ 334 (641)
T ss_pred cceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHh-cCCCCEEEEEeccccccCCcceeEEEecCchh
Confidence 4789999999999 77888999 9999999999999999999999 6
Q ss_pred ChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHH
Q 048509 74 YIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLL 118 (168)
Q Consensus 74 ~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~ 118 (168)
++.-|.|-.||+||.|.+.+|-+++..+|.+.+.+-...+..++-
T Consensus 335 n~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~e~aklr 379 (641)
T KOG0352|consen 335 NLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSGELAKLR 379 (641)
T ss_pred hhHHHHHhccccccCCCccceeeeecccchHHHHHHHhhHHHHHH
Confidence 679999999999999999999999999997765444444444433
No 89
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=98.91 E-value=6.1e-09 Score=95.73 Aligned_cols=112 Identities=17% Similarity=0.183 Sum_probs=80.8
Q ss_pred EEcCCCCHHHHHHHHHhcc--CCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccEEEE
Q 048509 8 QICESKLKPIYLIPLLRNL--GGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQVLVC 59 (168)
Q Consensus 8 ~~~~~~~K~~~L~~ll~~~--~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~iLva 59 (168)
++....+|..++.+-+... .+.|+||||+|...+ .-+.+.|+ .| .|+||
T Consensus 422 v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~-~G--~VtIA 498 (896)
T PRK13104 422 VYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGR-PG--AVTIA 498 (896)
T ss_pred EEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCC-CC--cEEEe
Confidence 4555677888888777543 467999999999988 66788899 88 49999
Q ss_pred ccccccCCCcCC---------------------------------C--------------CChhhHHhhhcccccCCCcc
Q 048509 60 SDAMTSGMDVER---------------------------------A--------------AYIKTYIHRAGPRARAGQNG 92 (168)
Q Consensus 60 Tdv~~rGlDi~~---------------------------------v--------------~~~~~yihr~GR~gR~g~~g 92 (168)
||+|+||+||.- | .+-.-=-|--||+||-|.+|
T Consensus 499 TNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPG 578 (896)
T PRK13104 499 TNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPG 578 (896)
T ss_pred ccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCC
Confidence 999999999872 2 11111246669999999999
Q ss_pred eEEEEeeCCchhHHHHHHHHHHHHHHHHhCC
Q 048509 93 HCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123 (168)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (168)
.+-.|++-+|+-.- .+-...+.++++.++.
T Consensus 579 ss~f~lSleD~l~~-~f~~~~~~~~~~~~~~ 608 (896)
T PRK13104 579 SSRFYLSLEDNLMR-IFASERVASMMRRLGM 608 (896)
T ss_pred ceEEEEEcCcHHHH-HhChHHHHHHHHHcCC
Confidence 99999987764431 1112445566666553
No 90
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.88 E-value=1.9e-08 Score=94.02 Aligned_cols=97 Identities=20% Similarity=0.266 Sum_probs=75.2
Q ss_pred EEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH---HHHHHHHHhCCCccEEEEccccccCCCcCCCCC-------
Q 048509 5 LSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS---PKTLKAFRGKGHMQVLVCSDAMTSGMDVERAAY------- 74 (168)
Q Consensus 5 ~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~---~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v~~------- 74 (168)
|.|++.+.-+-+..+...|+..-|.--|.+....-.. +++|.+|. +|+.+|||||.+.+-|||||++.+
T Consensus 805 QvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~-~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD 883 (1139)
T COG1197 805 QVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFY-NGEYDVLVCTTIIETGIDIPNANTIIIERAD 883 (1139)
T ss_pred EEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHH-cCCCCEEEEeeeeecCcCCCCCceEEEeccc
Confidence 4455555555555566666655555556666655555 99999999 999999999999999999999932
Q ss_pred ---hhhHHhhhcccccCCCcceEEEEeeCCc
Q 048509 75 ---IKTYIHRAGPRARAGQNGHCFTLLPKDE 102 (168)
Q Consensus 75 ---~~~yihr~GR~gR~g~~g~~~~~~~~~~ 102 (168)
..+.-|--||+||..+.++|+.++.+..
T Consensus 884 ~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 884 KFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred cccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 3666677799999999999999998655
No 91
>PRK09694 helicase Cas3; Provisional
Probab=98.84 E-value=7.1e-09 Score=95.95 Aligned_cols=73 Identities=15% Similarity=0.359 Sum_probs=56.5
Q ss_pred HHHHHHHhcc-CCCcEEEEcCCcchH---------------------------------HHHHHHH-HhCCC---ccEEE
Q 048509 17 IYLIPLLRNL-GGEKFIVFASSVANS---------------------------------PKTLKAF-RGKGH---MQVLV 58 (168)
Q Consensus 17 ~~L~~ll~~~-~~~~~iIF~~t~~~~---------------------------------~~~~~~F-~~~~~---~~iLv 58 (168)
..+..+++.. ...+++|||||++.| +++++.| + +++ ..|||
T Consensus 548 ~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk-~g~r~~~~ILV 626 (878)
T PRK09694 548 TLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGK-NGKRNQGRILV 626 (878)
T ss_pred HHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHh-cCCcCCCeEEE
Confidence 3444444432 456899999999998 3568888 5 665 47999
Q ss_pred EccccccCCCcCCC------CChhhHHhhhcccccCCC
Q 048509 59 CSDAMTSGMDVERA------AYIKTYIHRAGPRARAGQ 90 (168)
Q Consensus 59 aTdv~~rGlDi~~v------~~~~~yihr~GR~gR~g~ 90 (168)
||+|+++|+|++-- ..+++|+||+||++|.++
T Consensus 627 aTQViE~GLDId~DvlItdlaPidsLiQRaGR~~R~~~ 664 (878)
T PRK09694 627 ATQVVEQSLDLDFDWLITQLCPVDLLFQRLGRLHRHHR 664 (878)
T ss_pred ECcchhheeecCCCeEEECCCCHHHHHHHHhccCCCCC
Confidence 99999999999521 447999999999999875
No 92
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.77 E-value=2.6e-08 Score=91.61 Aligned_cols=112 Identities=17% Similarity=0.217 Sum_probs=79.4
Q ss_pred EEcCCCCHHHHHHHHHhcc--CCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccEEEE
Q 048509 8 QICESKLKPIYLIPLLRNL--GGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQVLVC 59 (168)
Q Consensus 8 ~~~~~~~K~~~L~~ll~~~--~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~iLva 59 (168)
++....+|..++.+-+... ...++||||+|...+ .-+.+.|+ .|. |+||
T Consensus 427 iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~-~G~--VtIA 503 (908)
T PRK13107 427 VYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGR-TGA--VTIA 503 (908)
T ss_pred EEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCC-CCc--EEEe
Confidence 3445567888777777643 467999999999988 66667888 887 9999
Q ss_pred ccccccCCCcCC--------------------------------C--------------CChhhHHhhhcccccCCCcce
Q 048509 60 SDAMTSGMDVER--------------------------------A--------------AYIKTYIHRAGPRARAGQNGH 93 (168)
Q Consensus 60 Tdv~~rGlDi~~--------------------------------v--------------~~~~~yihr~GR~gR~g~~g~ 93 (168)
||+|+||+||.- | .+-.-=-|--||+||-|.+|.
T Consensus 504 TnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGs 583 (908)
T PRK13107 504 TNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGS 583 (908)
T ss_pred cCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCc
Confidence 999999999872 2 111111456699999999999
Q ss_pred EEEEeeCCchhHHHHHHHHHHHHHHHHhCC
Q 048509 94 CFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123 (168)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (168)
+-.|++-+|+-.- .+-...+.++++.++.
T Consensus 584 s~f~lSlED~L~r-~f~~~~~~~~~~~~~~ 612 (908)
T PRK13107 584 SRFYLSMEDSLMR-IFASDRVSGMMKKLGM 612 (908)
T ss_pred eeEEEEeCcHHHH-HhChHHHHHHHHHcCC
Confidence 9999997774331 1112345556666543
No 93
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.71 E-value=1.5e-07 Score=78.39 Aligned_cols=80 Identities=18% Similarity=0.339 Sum_probs=64.3
Q ss_pred HHHHHHhccC--CCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccEEEEccccccCCCc
Q 048509 18 YLIPLLRNLG--GEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQVLVCSDAMTSGMDV 69 (168)
Q Consensus 18 ~L~~ll~~~~--~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~iLvaTdv~~rGlDi 69 (168)
.|..+|++.. ..+++||+++.... .+-.+.|+ +|++.+||+|.+++||+.+
T Consensus 293 kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV~~fR-~G~~~lLiTTTILERGVTf 371 (441)
T COG4098 293 KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVEAFR-DGKITLLITTTILERGVTF 371 (441)
T ss_pred HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCccHHHHHHHHH-cCceEEEEEeehhhccccc
Confidence 6777777654 47899999987766 77889999 9999999999999999999
Q ss_pred CCC-----------CChhhHHhhhcccccCC-C-cceEEEEe
Q 048509 70 ERA-----------AYIKTYIHRAGPRARAG-Q-NGHCFTLL 98 (168)
Q Consensus 70 ~~v-----------~~~~~yihr~GR~gR~g-~-~g~~~~~~ 98 (168)
|+| -+-+..+|-.||+||.- . .|..+.|-
T Consensus 372 p~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 372 PNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred ccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 999 22377899999999975 3 45544443
No 94
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.71 E-value=4.9e-08 Score=84.50 Aligned_cols=75 Identities=32% Similarity=0.483 Sum_probs=65.4
Q ss_pred CCCHHHHHHHHHhcc-CCCcEEEEcCCcchH-------------------------HHHHHHHHhCCCccEEEEcccccc
Q 048509 12 SKLKPIYLIPLLRNL-GGEKFIVFASSVANS-------------------------PKTLKAFRGKGHMQVLVCSDAMTS 65 (168)
Q Consensus 12 ~~~K~~~L~~ll~~~-~~~~~iIF~~t~~~~-------------------------~~~~~~F~~~~~~~iLvaTdv~~r 65 (168)
...+...+..++..+ ...+++|||.+...+ ..+++.|+ .|++++||++.|+..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~~il~~fr-~g~~~~lv~~~vl~E 344 (442)
T COG1061 266 SERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREAILERFR-TGGIKVLVTVKVLDE 344 (442)
T ss_pred cHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHH-cCCCCEEEEeeeccc
Confidence 345566667777665 467999999999988 88999999 989999999999999
Q ss_pred CCCcCCC---------CChhhHHhhhccccc
Q 048509 66 GMDVERA---------AYIKTYIHRAGPRAR 87 (168)
Q Consensus 66 GlDi~~v---------~~~~~yihr~GR~gR 87 (168)
|+|+|++ .+...|+||+||.-|
T Consensus 345 GvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 345 GVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred eecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 9999999 678999999999999
No 95
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.70 E-value=1.1e-07 Score=87.11 Aligned_cols=60 Identities=25% Similarity=0.460 Sum_probs=49.9
Q ss_pred HHHHHHHHhCCCccEEEEccccccCCCcCCC------------------CChhhHHhhhcccccCC--CcceEEEEeeCC
Q 048509 42 PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA------------------AYIKTYIHRAGPRARAG--QNGHCFTLLPKD 101 (168)
Q Consensus 42 ~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v------------------~~~~~yihr~GR~gR~g--~~g~~~~~~~~~ 101 (168)
.-+-+.|+ .|.++|||||+.++.|++.|.- -++.+|+|+.||+||-| ..|.++.+.+..
T Consensus 330 ~~vE~~Fr-~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~ 408 (766)
T COG1204 330 QLVEDAFR-KGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSH 408 (766)
T ss_pred HHHHHHHh-cCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCc
Confidence 55566899 9999999999999999999976 23578999999999987 667788877544
Q ss_pred c
Q 048509 102 E 102 (168)
Q Consensus 102 ~ 102 (168)
+
T Consensus 409 ~ 409 (766)
T COG1204 409 D 409 (766)
T ss_pred c
Confidence 4
No 96
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.68 E-value=6.5e-08 Score=91.76 Aligned_cols=62 Identities=24% Similarity=0.426 Sum_probs=53.8
Q ss_pred CCCcEEEEcCCcchH---------------------------------HHHHHHHHhCCCc-cEEEEccccccCCCcCCC
Q 048509 27 GGEKFIVFASSVANS---------------------------------PKTLKAFRGKGHM-QVLVCSDAMTSGMDVERA 72 (168)
Q Consensus 27 ~~~~~iIF~~t~~~~---------------------------------~~~~~~F~~~~~~-~iLvaTdv~~rGlDi~~v 72 (168)
.+.++||||.++.+| .+++++|+ ++.. .|||++|+++.|+|+|.|
T Consensus 697 ~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~~~~~li~~Fk-~~~~p~IlVsvdmL~TG~DvP~v 775 (1123)
T PRK11448 697 GEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSIDKPDQLIRRFK-NERLPNIVVTVDLLTTGIDVPSI 775 (1123)
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCccchHHHHHHHh-CCCCCeEEEEecccccCCCcccc
Confidence 457999999998887 45789999 8887 589999999999999998
Q ss_pred ---------CChhhHHhhhcccccCC
Q 048509 73 ---------AYIKTYIHRAGPRARAG 89 (168)
Q Consensus 73 ---------~~~~~yihr~GR~gR~g 89 (168)
.+...|+|++||+.|.-
T Consensus 776 ~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 776 CNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred cEEEEecCCCCHHHHHHHHhhhccCC
Confidence 66789999999999964
No 97
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.64 E-value=8.5e-08 Score=87.86 Aligned_cols=61 Identities=23% Similarity=0.461 Sum_probs=53.9
Q ss_pred HHHHH-HHHhCCCccEEEEccccccCCCcCCC-------------CChhhHHhhhcccccCC--CcceEEEEeeCCch
Q 048509 42 PKTLK-AFRGKGHMQVLVCSDAMTSGMDVERA-------------AYIKTYIHRAGPRARAG--QNGHCFTLLPKDED 103 (168)
Q Consensus 42 ~~~~~-~F~~~~~~~iLvaTdv~~rGlDi~~v-------------~~~~~yihr~GR~gR~g--~~g~~~~~~~~~~~ 103 (168)
.+.++ .|+ .|-+.|++||+.++-|++.|.. -+--+|.|++|||||+| ..|.+++++.+.|.
T Consensus 537 R~~iE~afr-~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~ 613 (1008)
T KOG0950|consen 537 REIIEAAFR-EGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEK 613 (1008)
T ss_pred HHHHHHHHH-hcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccch
Confidence 55555 899 9999999999999999999988 33488999999999997 67999999999993
No 98
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.51 E-value=3.6e-07 Score=83.02 Aligned_cols=60 Identities=20% Similarity=0.371 Sum_probs=51.8
Q ss_pred HHHHHHHHhCCCccEEEEccccccCCCcCCC---------------------CChhhHHhhhcccccCCCcceEEEEeeC
Q 048509 42 PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA---------------------AYIKTYIHRAGPRARAGQNGHCFTLLPK 100 (168)
Q Consensus 42 ~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v---------------------~~~~~yihr~GR~gR~g~~g~~~~~~~~ 100 (168)
+..+..|. .|+.+|||.|++++.|.|+|+| .....+.|=.||+||++.+|.++.=...
T Consensus 524 ~~~l~~~~-~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~ 602 (730)
T COG1198 524 EDLLDQFA-NGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYN 602 (730)
T ss_pred HHHHHHHh-CCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCC
Confidence 78899999 9999999999999999999999 2246678888999999999988776654
Q ss_pred Cc
Q 048509 101 DE 102 (168)
Q Consensus 101 ~~ 102 (168)
.+
T Consensus 603 P~ 604 (730)
T COG1198 603 PD 604 (730)
T ss_pred CC
Confidence 44
No 99
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.35 E-value=2.3e-06 Score=78.82 Aligned_cols=59 Identities=19% Similarity=0.432 Sum_probs=48.9
Q ss_pred HHHHH-HHHhCCCccEEEEccccccCCCcCCC-----------------CChhhHHhhhcccccCC--CcceEEEEeeCC
Q 048509 42 PKTLK-AFRGKGHMQVLVCSDAMTSGMDVERA-----------------AYIKTYIHRAGPRARAG--QNGHCFTLLPKD 101 (168)
Q Consensus 42 ~~~~~-~F~~~~~~~iLvaTdv~~rGlDi~~v-----------------~~~~~yihr~GR~gR~g--~~g~~~~~~~~~ 101 (168)
.++++ -|. .|-+.||+||..+|.|++.|.- -.+-.|.|++||+||-| ..|+++.+....
T Consensus 645 KE~VE~LFq-rGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 645 KEVVELLFQ-RGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred HHHHHHHHh-cCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 44554 578 9999999999999999999976 33689999999999988 678888877543
No 100
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.29 E-value=5.1e-06 Score=78.43 Aligned_cols=60 Identities=20% Similarity=0.292 Sum_probs=48.1
Q ss_pred HHHHHHHHhCCCccEEEEccccccCCCcCCC-------------------CChhhHHhhhcccccCC--CcceEEEEeeC
Q 048509 42 PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA-------------------AYIKTYIHRAGPRARAG--QNGHCFTLLPK 100 (168)
Q Consensus 42 ~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v-------------------~~~~~yihr~GR~gR~g--~~g~~~~~~~~ 100 (168)
...-+-|+ .|.++|||+|-.++.|++.|.= -++.+-+||.||+||.+ ..|..+.+-..
T Consensus 623 ~~~EdLf~-~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~ 701 (1674)
T KOG0951|consen 623 ELVEDLFA-DGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDH 701 (1674)
T ss_pred HHHHHHHh-cCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCc
Confidence 44555788 9999999999999999999965 34678899999999876 56666666555
Q ss_pred Cc
Q 048509 101 DE 102 (168)
Q Consensus 101 ~~ 102 (168)
.+
T Consensus 702 se 703 (1674)
T KOG0951|consen 702 SE 703 (1674)
T ss_pred hH
Confidence 55
No 101
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.27 E-value=9.6e-07 Score=79.66 Aligned_cols=60 Identities=18% Similarity=0.443 Sum_probs=49.4
Q ss_pred HHHHH-HHHhCCCccEEEEccccccCCCcCCC-----------------CChhhHHhhhcccccCC--CcceEEEEeeCC
Q 048509 42 PKTLK-AFRGKGHMQVLVCSDAMTSGMDVERA-----------------AYIKTYIHRAGPRARAG--QNGHCFTLLPKD 101 (168)
Q Consensus 42 ~~~~~-~F~~~~~~~iLvaTdv~~rGlDi~~v-----------------~~~~~yihr~GR~gR~g--~~g~~~~~~~~~ 101 (168)
.++++ -|. +|-+.+|.||..++.|++-|.- -+.-.|||+.||+||.| ..|.+|++++..
T Consensus 461 KE~IEILFq-EGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 461 KEVIEILFQ-EGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred HHHHHHHHh-ccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 44444 688 9999999999999999999975 22468999999999988 679999998744
Q ss_pred c
Q 048509 102 E 102 (168)
Q Consensus 102 ~ 102 (168)
-
T Consensus 540 m 540 (1041)
T KOG0948|consen 540 M 540 (1041)
T ss_pred C
Confidence 3
No 102
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=98.18 E-value=3.8e-06 Score=71.13 Aligned_cols=88 Identities=19% Similarity=0.325 Sum_probs=70.1
Q ss_pred CHHHHHHHHHhc-cCCCcEEEEcCCcchHHHHH--------------------------HHHHhCCCccEEEEccccccC
Q 048509 14 LKPIYLIPLLRN-LGGEKFIVFASSVANSPKTL--------------------------KAFRGKGHMQVLVCSDAMTSG 66 (168)
Q Consensus 14 ~K~~~L~~ll~~-~~~~~~iIF~~t~~~~~~~~--------------------------~~F~~~~~~~iLvaTdv~~rG 66 (168)
+=.+-+.++++. ..+...||||=++..|+++- +.+. .|++.|+|||-.+..|
T Consensus 302 d~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~-a~eiqvivatvafgmg 380 (695)
T KOG0353|consen 302 DCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWI-AGEIQVIVATVAFGMG 380 (695)
T ss_pred HHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCcccccccccccc-ccceEEEEEEeeeccc
Confidence 334555556653 34678999999999993333 3344 7899999999999999
Q ss_pred CCcCCC---------CChhhHHh-------------------------------------------hhcccccCCCcceE
Q 048509 67 MDVERA---------AYIKTYIH-------------------------------------------RAGPRARAGQNGHC 94 (168)
Q Consensus 67 lDi~~v---------~~~~~yih-------------------------------------------r~GR~gR~g~~g~~ 94 (168)
||-|+| .+++.|.| -.||+||.+.+..|
T Consensus 381 idkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~c 460 (695)
T KOG0353|consen 381 IDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADC 460 (695)
T ss_pred CCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccE
Confidence 999999 55788988 67999999999999
Q ss_pred EEEeeCCc
Q 048509 95 FTLLPKDE 102 (168)
Q Consensus 95 ~~~~~~~~ 102 (168)
|+++.-.|
T Consensus 461 ilyy~~~d 468 (695)
T KOG0353|consen 461 ILYYGFAD 468 (695)
T ss_pred EEEechHH
Confidence 99997666
No 103
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.18 E-value=4.8e-06 Score=76.34 Aligned_cols=62 Identities=24% Similarity=0.450 Sum_probs=49.5
Q ss_pred HHHHHHHHhCCCccEEEEccccccCCCcCC-C-----CChhhHHhhhcccccCC--CcceEEEEeeCCchh
Q 048509 42 PKTLKAFRGKGHMQVLVCSDAMTSGMDVER-A-----AYIKTYIHRAGPRARAG--QNGHCFTLLPKDEDK 104 (168)
Q Consensus 42 ~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~-v-----~~~~~yihr~GR~gR~g--~~g~~~~~~~~~~~~ 104 (168)
.++.+.|+ .+...|+|||+|.+-|+|+.- + ..+++.|||+||++|.| ..|.++.+.......
T Consensus 484 ~~l~~~~~-~~~~~IvVaTQVIEagvDidfd~mITe~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~ 553 (733)
T COG1203 484 RELKKLFK-QNEGFIVVATQVIEAGVDIDFDVLITELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGP 553 (733)
T ss_pred HHHHHHHh-ccCCeEEEEeeEEEEEeccccCeeeecCCCHHHHHHHHHHHhhcccccCCceeEeecccCCC
Confidence 44444457 889999999999999999872 2 77899999999999999 678888887654433
No 104
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.14 E-value=1.9e-05 Score=73.56 Aligned_cols=70 Identities=21% Similarity=0.448 Sum_probs=53.9
Q ss_pred HHHHHHHHhCCCccEEEEccccccCCCcCCC-------------------CChhhHHhhhcccccC--CCcceEEEEeeC
Q 048509 42 PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA-------------------AYIKTYIHRAGPRARA--GQNGHCFTLLPK 100 (168)
Q Consensus 42 ~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v-------------------~~~~~yihr~GR~gR~--g~~g~~~~~~~~ 100 (168)
.-.-+.|+ .|.++||+||..++-|+++|.- -.+-+-+|-.||+||- +..|.++.+.+.
T Consensus 412 ~l~E~~F~-~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~ 490 (1230)
T KOG0952|consen 412 QLVEKEFK-EGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTR 490 (1230)
T ss_pred HHHHHHHh-cCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecc
Confidence 44455799 9999999999999999999976 1235568999999995 578988888765
Q ss_pred CchhHHHHHHHHHHHHHHHH
Q 048509 101 DEDKLLYMFQVKRFKKLLQQ 120 (168)
Q Consensus 101 ~~~~~~~~~~~~~~~~i~~~ 120 (168)
+- +..+..++..
T Consensus 491 dk--------l~~Y~sLl~~ 502 (1230)
T KOG0952|consen 491 DK--------LDHYESLLTG 502 (1230)
T ss_pred cH--------HHHHHHHHcC
Confidence 55 5566666553
No 105
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=98.13 E-value=1.5e-05 Score=74.07 Aligned_cols=88 Identities=23% Similarity=0.359 Sum_probs=71.3
Q ss_pred CHHHHHHHHHhcc--CCCcEEEEcCCcchH----------------------------------HHHHHHHHhCCCccEE
Q 048509 14 LKPIYLIPLLRNL--GGEKFIVFASSVANS----------------------------------PKTLKAFRGKGHMQVL 57 (168)
Q Consensus 14 ~K~~~L~~ll~~~--~~~~~iIF~~t~~~~----------------------------------~~~~~~F~~~~~~~iL 57 (168)
++...+..++... ..-++|+|+.++..+ ..+...|+ +|++.++
T Consensus 290 s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~-~g~~~~~ 368 (851)
T COG1205 290 SALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFK-EGELLGV 368 (851)
T ss_pred chHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHh-cCCccEE
Confidence 4444455554433 456999999999988 77788999 9999999
Q ss_pred EEccccccCCCcCCC---------C-ChhhHHhhhcccccCCCcceEEEEeeCCc
Q 048509 58 VCSDAMTSGMDVERA---------A-YIKTYIHRAGPRARAGQNGHCFTLLPKDE 102 (168)
Q Consensus 58 vaTdv~~rGlDi~~v---------~-~~~~yihr~GR~gR~g~~g~~~~~~~~~~ 102 (168)
++|+.+.-|+|+.++ . ++.+|.||.||+||.++.+..+.+...+.
T Consensus 369 ~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~ 423 (851)
T COG1205 369 IATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDP 423 (851)
T ss_pred ecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCc
Confidence 999999999999999 3 56899999999999997777777776444
No 106
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.03 E-value=2.6e-05 Score=68.45 Aligned_cols=74 Identities=22% Similarity=0.333 Sum_probs=66.0
Q ss_pred CCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccEEEEccccccCCCcCCC--------
Q 048509 27 GGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA-------- 72 (168)
Q Consensus 27 ~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v-------- 72 (168)
...+++|-+-|++.| .+++.+.+ .|+.+|||.-+++-.|+|+|+|
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR-~G~~DvLVGINLLREGLDiPEVsLVAIlDA 523 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLR-LGEFDVLVGINLLREGLDLPEVSLVAILDA 523 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHh-cCCccEEEeehhhhccCCCcceeEEEEeec
Confidence 357999999999988 88999999 9999999999999999999999
Q ss_pred ------CChhhHHhhhcccccCCCcceEEEEeeCCc
Q 048509 73 ------AYIKTYIHRAGPRARAGQNGHCFTLLPKDE 102 (168)
Q Consensus 73 ------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~ 102 (168)
.+-.+.||-+||++| +-.|.+|++.+.-.
T Consensus 524 DKeGFLRse~SLIQtIGRAAR-N~~GkvIlYAD~iT 558 (663)
T COG0556 524 DKEGFLRSERSLIQTIGRAAR-NVNGKVILYADKIT 558 (663)
T ss_pred CccccccccchHHHHHHHHhh-ccCCeEEEEchhhh
Confidence 556889999999999 47899999986544
No 107
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.96 E-value=4.3e-05 Score=70.52 Aligned_cols=115 Identities=12% Similarity=0.197 Sum_probs=74.7
Q ss_pred EEcCCCCHHHHHHHHHhcc--CCCcEEEEcCCcchHHHHHHHHHh----------------------CC-CccEEEEccc
Q 048509 8 QICESKLKPIYLIPLLRNL--GGEKFIVFASSVANSPKTLKAFRG----------------------KG-HMQVLVCSDA 62 (168)
Q Consensus 8 ~~~~~~~K~~~L~~ll~~~--~~~~~iIF~~t~~~~~~~~~~F~~----------------------~~-~~~iLvaTdv 62 (168)
++....+|..++..-+... ...|++|.|.|...++.+-+.++. .| .-.|.|||++
T Consensus 404 iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e~EA~IIa~AG~~GaVTIATNM 483 (925)
T PRK12903 404 IFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNAREAEIIAKAGQKGAITIATNM 483 (925)
T ss_pred EEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchhhHHHHHHhCCCCCeEEEeccc
Confidence 4455667888877766543 467999999999888111111110 33 4578899999
Q ss_pred cccCCCcCCC-----------------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHH-HHHHHHHHHhCC
Q 048509 63 MTSGMDVERA-----------------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQV-KRFKKLLQQADH 123 (168)
Q Consensus 63 ~~rGlDi~~v-----------------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~ 123 (168)
|+||.||.-- .+-.-=-|-.||+||-|.+|.+-.|++-+|+-.-- +-. ..+..++..++.
T Consensus 484 AGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~L~r~-f~~~~ri~~~~~~l~~ 561 (925)
T PRK12903 484 AGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQLFRR-FSNFDKIKEAFKKLGD 561 (925)
T ss_pred ccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchHHHHH-hCCHHHHHHHHHhcCC
Confidence 9999998742 11122247789999999999999999877643310 111 345555555543
No 108
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.81 E-value=5.6e-05 Score=67.04 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=60.6
Q ss_pred CCcEEEEcCCcchH----------------------------------HHHHHHHHhCCCccEEEEccccccCCCcCCC-
Q 048509 28 GEKFIVFASSVANS----------------------------------PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA- 72 (168)
Q Consensus 28 ~~~~iIF~~t~~~~----------------------------------~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v- 72 (168)
+-++|-||.++.-| .++-.+.- .|.+.-+|||+.++-||||..+
T Consensus 525 ~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F-~G~L~giIaTNALELGIDIG~LD 603 (1034)
T KOG4150|consen 525 GLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLF-GGKLCGIIATNALELGIDIGHLD 603 (1034)
T ss_pred CCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhh-CCeeeEEEecchhhhccccccce
Confidence 45899999999998 44445555 7899999999999999999998
Q ss_pred --------CChhhHHhhhcccccCCCcceEEEEee
Q 048509 73 --------AYIKTYIHRAGPRARAGQNGHCFTLLP 99 (168)
Q Consensus 73 --------~~~~~yihr~GR~gR~g~~g~~~~~~~ 99 (168)
-++.++-|+.||+||.+++..++.+..
T Consensus 604 AVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~ 638 (1034)
T KOG4150|consen 604 AVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAF 638 (1034)
T ss_pred eEEEccCchhHHHHHHHhccccccCCCceEEEEEe
Confidence 557899999999999999988877765
No 109
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=97.73 E-value=6.7e-05 Score=68.26 Aligned_cols=96 Identities=19% Similarity=0.249 Sum_probs=66.5
Q ss_pred EEcCCCCHHHHHHHHHhcc--CCCcEEEEcCCcchHHHHHHHHHh----------------------CC-CccEEEEccc
Q 048509 8 QICESKLKPIYLIPLLRNL--GGEKFIVFASSVANSPKTLKAFRG----------------------KG-HMQVLVCSDA 62 (168)
Q Consensus 8 ~~~~~~~K~~~L~~ll~~~--~~~~~iIF~~t~~~~~~~~~~F~~----------------------~~-~~~iLvaTdv 62 (168)
++....+|..++.+-+... ...|++|.|.|....+..-+.++. .| .-.|-|||++
T Consensus 405 iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~EA~IIa~AG~~gaVTIATNM 484 (764)
T PRK12326 405 VYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEEARIIAEAGKYGAVTVSTQM 484 (764)
T ss_pred eEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhHHHHHHhcCCCCcEEEEecC
Confidence 3444566777777766543 467999999998887111111110 22 3468899999
Q ss_pred cccCCCcC----------CC--------------CChhhHHhhhcccccCCCcceEEEEeeCCch
Q 048509 63 MTSGMDVE----------RA--------------AYIKTYIHRAGPRARAGQNGHCFTLLPKDED 103 (168)
Q Consensus 63 ~~rGlDi~----------~v--------------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~ 103 (168)
|+||.||. .| .+-.-=-|-.||+||-|.+|.+-.|++-+|+
T Consensus 485 AGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 485 AGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred CCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcchh
Confidence 99999987 33 2223336777999999999999999997773
No 110
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=97.69 E-value=0.00049 Score=64.27 Aligned_cols=111 Identities=16% Similarity=0.218 Sum_probs=73.4
Q ss_pred EEcCCCCHHHHHHHHHhcc--CCCcEEEEcCCcchH-------------------------HHHHHHHHhCC-CccEEEE
Q 048509 8 QICESKLKPIYLIPLLRNL--GGEKFIVFASSVANS-------------------------PKTLKAFRGKG-HMQVLVC 59 (168)
Q Consensus 8 ~~~~~~~K~~~L~~ll~~~--~~~~~iIF~~t~~~~-------------------------~~~~~~F~~~~-~~~iLva 59 (168)
++....+|..++..-+... ...|++|-|.|.... ..++. . .| .-.|-||
T Consensus 546 iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea~iia--~-AG~~g~VTIA 622 (970)
T PRK12899 546 FYMTEREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAEIIA--G-AGKLGAVTVA 622 (970)
T ss_pred EecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHHHHHH--h-cCCCCcEEEe
Confidence 3445567777776666543 467999999998776 11111 1 23 3578899
Q ss_pred ccccccCCCcCCC-----------------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhC
Q 048509 60 SDAMTSGMDVERA-----------------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQAD 122 (168)
Q Consensus 60 Tdv~~rGlDi~~v-----------------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (168)
|++|+||.||.-= .+..---|-.||+||-|.+|.+-.|++-+|+-.- .+-...+..++..++
T Consensus 623 TNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlEDdL~~-~f~~~~i~~~~~~~~ 701 (970)
T PRK12899 623 TNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDRLMR-LFASPKLNTLIRHFR 701 (970)
T ss_pred eccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcchHHHH-HhCcHHHHHHHHHcC
Confidence 9999999998643 3334456778999999999999999997774331 111133445555443
No 111
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=97.68 E-value=9e-05 Score=70.09 Aligned_cols=90 Identities=19% Similarity=0.246 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHhccC--CCcEEEEcCCcchH--------------------------HHHHHHHHhCC---CccEEEEc
Q 048509 12 SKLKPIYLIPLLRNLG--GEKFIVFASSVANS--------------------------PKTLKAFRGKG---HMQVLVCS 60 (168)
Q Consensus 12 ~~~K~~~L~~ll~~~~--~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~---~~~iLvaT 60 (168)
...|+.+|..+|.... ..++|||+...... ..+++.|. .. ...+|++|
T Consensus 469 ~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn-~~~s~~~VfLLST 547 (1033)
T PLN03142 469 NSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFN-KPGSEKFVFLLST 547 (1033)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhc-cccCCceEEEEec
Confidence 4578888888887653 56999999865544 88999997 53 24578999
Q ss_pred cccccCCCcCCC---------CChhhHHhhhcccccCCCcce--EEEEeeCCc
Q 048509 61 DAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGH--CFTLLPKDE 102 (168)
Q Consensus 61 dv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~--~~~~~~~~~ 102 (168)
.+++.|||+... .++..+.|++||+-|.|+... ++-|++.+.
T Consensus 548 rAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gT 600 (1033)
T PLN03142 548 RAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYT 600 (1033)
T ss_pred cccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCc
Confidence 999999999887 568999999999999997644 555666543
No 112
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=97.67 E-value=0.00032 Score=65.21 Aligned_cols=113 Identities=17% Similarity=0.229 Sum_probs=73.3
Q ss_pred EEcCCCCHHHHHHHHHhcc--CCCcEEEEcCCcchH-------------HHHHHHH----------HhCC-CccEEEEcc
Q 048509 8 QICESKLKPIYLIPLLRNL--GGEKFIVFASSVANS-------------PKTLKAF----------RGKG-HMQVLVCSD 61 (168)
Q Consensus 8 ~~~~~~~K~~~L~~ll~~~--~~~~~iIF~~t~~~~-------------~~~~~~F----------~~~~-~~~iLvaTd 61 (168)
++....+|..++.+-+... ...|++|-+.|.... ..+|+.- . .| .-.|-|||+
T Consensus 427 vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~-AG~~GaVTIATN 505 (913)
T PRK13103 427 VYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQ-AGRPGALTIATN 505 (913)
T ss_pred EEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccchhHHHHHHc-CCCCCcEEEecc
Confidence 4555677888887777644 467999999998887 1111110 1 33 457889999
Q ss_pred ccccCCCcC--------------------------------CC--------------CChhhHHhhhcccccCCCcceEE
Q 048509 62 AMTSGMDVE--------------------------------RA--------------AYIKTYIHRAGPRARAGQNGHCF 95 (168)
Q Consensus 62 v~~rGlDi~--------------------------------~v--------------~~~~~yihr~GR~gR~g~~g~~~ 95 (168)
+|+||.||. .| .+-.-=-|-.||+||-|.+|.+-
T Consensus 506 MAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~ 585 (913)
T PRK13103 506 MAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSR 585 (913)
T ss_pred CCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceE
Confidence 999999994 22 11122246679999999999999
Q ss_pred EEeeCCchhHHHHHHHHHHHHHHHHhC
Q 048509 96 TLLPKDEDKLLYMFQVKRFKKLLQQAD 122 (168)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (168)
.|++-+|+-.- .+-...+..++..+.
T Consensus 586 f~lSlED~Lmr-~fg~~~~~~~~~~~~ 611 (913)
T PRK13103 586 FYLSLEDSLMR-IFASDRVKNFMKALG 611 (913)
T ss_pred EEEEcCcHHHH-hhCcHHHHHHHHHcC
Confidence 99997664331 111123444555554
No 113
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.55 E-value=0.0012 Score=62.29 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=76.2
Q ss_pred EEcCCCCHHHHHHHHHhcc--CCCcEEEEcCCcchH-------------HHHHHHHHh---------C-CCccEEEEccc
Q 048509 8 QICESKLKPIYLIPLLRNL--GGEKFIVFASSVANS-------------PKTLKAFRG---------K-GHMQVLVCSDA 62 (168)
Q Consensus 8 ~~~~~~~K~~~L~~ll~~~--~~~~~iIF~~t~~~~-------------~~~~~~F~~---------~-~~~~iLvaTdv 62 (168)
++....+|..++..-+... ...|++|-+.|.... ..+|+.-.+ . ..-.|-|||++
T Consensus 606 vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~GaVTIATNM 685 (1112)
T PRK12901 606 VYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPGTVTIATNM 685 (1112)
T ss_pred EecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCCcEEEeccC
Confidence 4445567887777777654 467999999998777 112211000 2 23468899999
Q ss_pred cccCCCcCC---C--------------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCC
Q 048509 63 MTSGMDVER---A--------------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123 (168)
Q Consensus 63 ~~rGlDi~~---v--------------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (168)
|+||.||.- | .+..---|-.||+||-|.+|.+-.|++-+|+-.- .+--..+.++++.++.
T Consensus 686 AGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdLmr-~Fgs~ri~~~m~~~g~ 762 (1112)
T PRK12901 686 AGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLMR-LFGSERIAKVMDRMGL 762 (1112)
T ss_pred cCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHHHH-hhCcHHHHHHHHHcCC
Confidence 999999872 3 3334446777999999999999999987664331 1112345566666654
No 114
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.55 E-value=0.00044 Score=64.72 Aligned_cols=57 Identities=21% Similarity=0.409 Sum_probs=42.8
Q ss_pred CHHHHHHHHHhccCCCcEEEEcCC---cchH---------------------HHHHHHHHhCCCccEEEEcc----cccc
Q 048509 14 LKPIYLIPLLRNLGGEKFIVFASS---VANS---------------------PKTLKAFRGKGHMQVLVCSD----AMTS 65 (168)
Q Consensus 14 ~K~~~L~~ll~~~~~~~~iIF~~t---~~~~---------------------~~~~~~F~~~~~~~iLvaTd----v~~r 65 (168)
+-...+..+++..+. =.||||+. ++.+ .+.++.|. .|++++||+.. ++-|
T Consensus 322 ~~~e~~~elvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~~~~~le~F~-~GeidvLVGvAsyYG~lVR 399 (1187)
T COG1110 322 ESLEKVVELVKKLGD-GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAEKEEALEDFE-EGEVDVLVGVASYYGVLVR 399 (1187)
T ss_pred ccHHHHHHHHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeeccchhhhhhhc-cCceeEEEEecccccceee
Confidence 334445555555543 47899988 4444 88999999 99999998765 7899
Q ss_pred CCCcCCC
Q 048509 66 GMDVERA 72 (168)
Q Consensus 66 GlDi~~v 72 (168)
|||.|+.
T Consensus 400 GlDLP~r 406 (1187)
T COG1110 400 GLDLPHR 406 (1187)
T ss_pred cCCchhh
Confidence 9999987
No 115
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=97.53 E-value=0.0003 Score=65.61 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=39.5
Q ss_pred CCCcEEEEcCCcchH---------------------------HHHHHHHHhCCCccEEEEccccccCCCcCCC
Q 048509 27 GGEKFIVFASSVANS---------------------------PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA 72 (168)
Q Consensus 27 ~~~~~iIF~~t~~~~---------------------------~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v 72 (168)
.+++++|||+|.... .+++++|+ .++..||+||+.+++|+|+|+.
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~~~r~~ll~~F~-~~~~~iLlgt~sf~EGVD~~g~ 744 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGINGSRAKIKKRFN-NGEKAILLGTSSFWEGVDFPGN 744 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCCccHHHHHHHHH-hCCCeEEEEcceeecccccCCC
Confidence 346899999987655 66789999 9999999999999999999988
No 116
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.43 E-value=0.00083 Score=59.41 Aligned_cols=56 Identities=27% Similarity=0.349 Sum_probs=41.8
Q ss_pred HHHHHHHHhC--CCccEEEEccccccCCCcCCC-----------------CChhhHHhhhcccccCC---CcceEEEEe
Q 048509 42 PKTLKAFRGK--GHMQVLVCSDAMTSGMDVERA-----------------AYIKTYIHRAGPRARAG---QNGHCFTLL 98 (168)
Q Consensus 42 ~~~~~~F~~~--~~~~iLvaTdv~~rGlDi~~v-----------------~~~~~yihr~GR~gR~g---~~g~~~~~~ 98 (168)
.+.-..|. . ++.+||||||.+++|+++.-- -.+.+-.|-+||+||.| ..|.+.+|-
T Consensus 397 ~aQA~~FN-d~~~e~dvlVAsDAIGMGLNL~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~ 474 (700)
T KOG0953|consen 397 LAQAALFN-DPSNECDVLVASDAIGMGLNLNIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLH 474 (700)
T ss_pred HHHHHHhC-CCCCccceEEeecccccccccceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEee
Confidence 44445677 6 899999999999999986532 22466688999999987 357776664
No 117
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=97.40 E-value=0.00039 Score=65.49 Aligned_cols=60 Identities=18% Similarity=0.337 Sum_probs=49.4
Q ss_pred HHHHHHHHhCCCccEEEEccccccCCCcCCC-----------------CChhhHHhhhcccccCC--CcceEEEEeeCCc
Q 048509 42 PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA-----------------AYIKTYIHRAGPRARAG--QNGHCFTLLPKDE 102 (168)
Q Consensus 42 ~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v-----------------~~~~~yihr~GR~gR~g--~~g~~~~~~~~~~ 102 (168)
.-+-+-|. .|-+.|++||.+++.|++.|.- -+...|+|..||+||.| ..|++++.-.+..
T Consensus 460 ~~vE~Lfq-~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~ 538 (1041)
T COG4581 460 ELVEELFQ-EGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFE 538 (1041)
T ss_pred HHHHHHHh-ccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCCC
Confidence 44445677 9999999999999999999965 34699999999999988 6788888855444
No 118
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.09 E-value=0.0013 Score=49.62 Aligned_cols=64 Identities=16% Similarity=0.230 Sum_probs=39.7
Q ss_pred EEcCCCCHHHHHHHHHhccC-CCcEEEEcCCcchHHHHHHHHHhCCCccEEEEcc--ccccCCCcCCC
Q 048509 8 QICESKLKPIYLIPLLRNLG-GEKFIVFASSVANSPKTLKAFRGKGHMQVLVCSD--AMTSGMDVERA 72 (168)
Q Consensus 8 ~~~~~~~K~~~L~~ll~~~~-~~~~iIF~~t~~~~~~~~~~F~~~~~~~iLvaTd--v~~rGlDi~~v 72 (168)
++++..+-++.+...+.... ....-||+.+.....+.++.|+ .++-.||+|+. -++.|+|+++-
T Consensus 14 v~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q~~~~~~~~l~~~~-~~~~~il~~v~~g~~~EGiD~~~~ 80 (167)
T PF13307_consen 14 VFFPSYRRLEKVYERLKERLEEKGIPVFVQGSKSRDELLEEFK-RGEGAILLAVAGGSFSEGIDFPGD 80 (167)
T ss_dssp EEESSHHHHHHHHTT-TSS-E-ETSCEEESTCCHHHHHHHHHC-CSSSEEEEEETTSCCGSSS--ECE
T ss_pred EEeCCHHHHHHHHHHHHhhcccccceeeecCcchHHHHHHHHH-hccCeEEEEEecccEEEeecCCCc
Confidence 33344444444444443322 1122455555555599999999 99999999999 99999999963
No 119
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.04 E-value=0.0012 Score=60.80 Aligned_cols=85 Identities=18% Similarity=0.312 Sum_probs=55.8
Q ss_pred CCCccEEEEccccccCCCcCCC-----------------CChh----------hHHhhhcccccCCCcceEEEEeeCCch
Q 048509 51 KGHMQVLVCSDAMTSGMDVERA-----------------AYIK----------TYIHRAGPRARAGQNGHCFTLLPKDED 103 (168)
Q Consensus 51 ~~~~~iLvaTdv~~rGlDi~~v-----------------~~~~----------~yihr~GR~gR~g~~g~~~~~~~~~~~ 103 (168)
.|.--++|||+||+-.+.||+| ..++ +--||+||+||.| +|+||=++++.=.
T Consensus 628 ~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSAVf 706 (1172)
T KOG0926|consen 628 KGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSAVF 706 (1172)
T ss_pred CCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhHHh
Confidence 6777789999999999999999 1222 2358999999975 8999999875432
Q ss_pred hH-HHHHHHH--------HHHHHHHHhCCCCCCCcCCChhhH
Q 048509 104 KL-LYMFQVK--------RFKKLLQQADHDSCPVHSIPSSSI 136 (168)
Q Consensus 104 ~~-~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~~ 136 (168)
.. +..+... .+.-.++.++.+.+..+++|....
T Consensus 707 ~~~Fe~fS~PEIlk~Pve~lvLqMKsMnI~kVvnFPFPtpPd 748 (1172)
T KOG0926|consen 707 SNDFEEFSLPEILKKPVESLVLQMKSMNIDKVVNFPFPTPPD 748 (1172)
T ss_pred hcchhhhccHHHhhCcHHHHHHHHHhcCccceecCCCCCCcc
Confidence 11 1011111 222246667777776667764433
No 120
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=96.93 E-value=0.0013 Score=61.55 Aligned_cols=55 Identities=25% Similarity=0.424 Sum_probs=47.3
Q ss_pred HHHhCCCccEEEEccccccCCCcCCC----------CChhhHHhhhcccccCC--CcceEEEEeeCCc
Q 048509 47 AFRGKGHMQVLVCSDAMTSGMDVERA----------AYIKTYIHRAGPRARAG--QNGHCFTLLPKDE 102 (168)
Q Consensus 47 ~F~~~~~~~iLvaTdv~~rGlDi~~v----------~~~~~yihr~GR~gR~g--~~g~~~~~~~~~~ 102 (168)
-|+ .|.+.||+||..++-||+-|.- -++-.|-|++||+||.| ..|.++.+--|..
T Consensus 983 LFR-~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~FmgiP~~ 1049 (1330)
T KOG0949|consen 983 LFR-QGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFMGIPRQ 1049 (1330)
T ss_pred Hhh-cCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEEeCcHH
Confidence 599 9999999999999999999976 55789999999999987 6787776655555
No 121
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.78 E-value=0.0024 Score=59.39 Aligned_cols=75 Identities=17% Similarity=0.395 Sum_probs=55.0
Q ss_pred CCCcEEEEcCCcchH---------------------------HHHHHHHHh--CCCccEEEEccccccCCCcCCC-----
Q 048509 27 GGEKFIVFASSVANS---------------------------PKTLKAFRG--KGHMQVLVCSDAMTSGMDVERA----- 72 (168)
Q Consensus 27 ~~~~~iIF~~t~~~~---------------------------~~~~~~F~~--~~~~~iLvaTdv~~rGlDi~~v----- 72 (168)
..+.++||.+-.... .+-.+-|.- .+.-.|++||++++=+|.||+|
T Consensus 258 ~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VID 337 (845)
T COG1643 258 GSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVID 337 (845)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEec
Confidence 467899999887776 222222331 3333499999999999999999
Q ss_pred ----------------------CChhhHHhhhcccccCCCcceEEEEeeCCc
Q 048509 73 ----------------------AYIKTYIHRAGPRARAGQNGHCFTLLPKDE 102 (168)
Q Consensus 73 ----------------------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~ 102 (168)
-+=.+-.||.||+||- .+|.||=+++.++
T Consensus 338 sG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~ 388 (845)
T COG1643 338 SGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEED 388 (845)
T ss_pred CCcccccccccccCceeeeEEEechhhhhhhccccccC-CCceEEEecCHHH
Confidence 0116668999999997 5999999998655
No 122
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=96.56 E-value=0.0017 Score=60.60 Aligned_cols=59 Identities=15% Similarity=0.366 Sum_probs=46.0
Q ss_pred HHHHHHHHhCCCccEEEEccccccCCCcCCC-----------------CC----------hhhHHhhhcccccCCCcceE
Q 048509 42 PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA-----------------AY----------IKTYIHRAGPRARAGQNGHC 94 (168)
Q Consensus 42 ~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v-----------------~~----------~~~yihr~GR~gR~g~~g~~ 94 (168)
+.++..-- .|.-.|++||++|+-.|-|++| .+ -.+-.||.||+||. .+|.|
T Consensus 460 ~~VF~~pp-~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~c 537 (924)
T KOG0920|consen 460 QAVFKRPP-KGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGIC 537 (924)
T ss_pred HHhcCCCC-CCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCee
Confidence 34444444 6788999999999999999999 00 14447999999996 79999
Q ss_pred EEEeeCCc
Q 048509 95 FTLLPKDE 102 (168)
Q Consensus 95 ~~~~~~~~ 102 (168)
+-+++...
T Consensus 538 y~L~~~~~ 545 (924)
T KOG0920|consen 538 YHLYTRSR 545 (924)
T ss_pred EEeechhh
Confidence 99998665
No 123
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.53 E-value=0.0052 Score=56.64 Aligned_cols=71 Identities=23% Similarity=0.296 Sum_probs=54.4
Q ss_pred HHHHHHHhc--cC--CCcEEEEcCCcchH-----------------------------HHHHHHHHhC--CCccEEEEcc
Q 048509 17 IYLIPLLRN--LG--GEKFIVFASSVANS-----------------------------PKTLKAFRGK--GHMQVLVCSD 61 (168)
Q Consensus 17 ~~L~~ll~~--~~--~~~~iIF~~t~~~~-----------------------------~~~~~~F~~~--~~~~iLvaTd 61 (168)
..|.++|.. .+ .+++||||.+..+| +..+..|. . .--+|-|+.|
T Consensus 411 r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q~~Id~f~-~ke~~P~Iaitvd 489 (875)
T COG4096 411 RELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQALIDNFI-DKEKYPRIAITVD 489 (875)
T ss_pred HHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhhHHHHHHHH-hcCCCCceEEehh
Confidence 344455554 22 47999999999999 66677777 4 3347889999
Q ss_pred ccccCCCcCCC---------CChhhHHhhhcccccC
Q 048509 62 AMTSGMDVERA---------AYIKTYIHRAGPRARA 88 (168)
Q Consensus 62 v~~rGlDi~~v---------~~~~~yihr~GR~gR~ 88 (168)
++.-|+|+|.| .+-.-|-|++||.=|.
T Consensus 490 lL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 490 LLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred hhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 99999999999 5567889999996664
No 124
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.45 E-value=0.0053 Score=55.53 Aligned_cols=56 Identities=21% Similarity=0.455 Sum_probs=43.0
Q ss_pred HHHHHHHHhCCCccEEEEccccccCCCcCCC-----------------CCh----------hhHHhhhcccccCCCcceE
Q 048509 42 PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA-----------------AYI----------KTYIHRAGPRARAGQNGHC 94 (168)
Q Consensus 42 ~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v-----------------~~~----------~~yihr~GR~gR~g~~g~~ 94 (168)
.++++--- .|.-.|++||++|+-.|.|++| ..+ .+-.||+||+||.| +|.|
T Consensus 522 akIFePtP-~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKC 599 (902)
T KOG0923|consen 522 AKIFEPTP-PGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKC 599 (902)
T ss_pred HhhcCCCC-CCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCce
Confidence 33333333 6678999999999999999999 011 45579999999975 8999
Q ss_pred EEEee
Q 048509 95 FTLLP 99 (168)
Q Consensus 95 ~~~~~ 99 (168)
+=+++
T Consensus 600 fRLYt 604 (902)
T KOG0923|consen 600 FRLYT 604 (902)
T ss_pred EEeec
Confidence 99998
No 125
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=96.41 E-value=0.035 Score=51.79 Aligned_cols=43 Identities=21% Similarity=0.374 Sum_probs=28.5
Q ss_pred hhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCC
Q 048509 80 HRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123 (168)
Q Consensus 80 hr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (168)
|-.||+||-|.+|.+-.|++=+|+-.- .+--..+..++..++.
T Consensus 610 QLrGRaGRQGDPG~s~f~lSLED~l~~-~f~~~~~~~~~~~~~~ 652 (870)
T CHL00122 610 QLRGRAGRQGDPGSSRFFLSLEDNLLR-IFGGDKIQNLMQTLNL 652 (870)
T ss_pred HHhccccCCCCCCcceEEEEeccHHHH-hhChHHHHHHHHHhCC
Confidence 556899999999999999987764431 1122345556655543
No 126
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=96.35 E-value=0.014 Score=53.32 Aligned_cols=56 Identities=20% Similarity=0.297 Sum_probs=41.9
Q ss_pred HHHHHHHhC-CCccEEEEccccccCCCcCCCCC--------hhhHHhhhcccccC-C---CcceEEEEee
Q 048509 43 KTLKAFRGK-GHMQVLVCSDAMTSGMDVERAAY--------IKTYIHRAGPRARA-G---QNGHCFTLLP 99 (168)
Q Consensus 43 ~~~~~F~~~-~~~~iLvaTdv~~rGlDi~~v~~--------~~~yihr~GR~gR~-g---~~g~~~~~~~ 99 (168)
+++++|+ . +.++|||++|++.-|.|.|.+.. --.++|.+||+-|. . ..|..+-|+.
T Consensus 581 ~~~~~Fk-~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~h~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 581 KDLERFK-KEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKYHGLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred HHHHHhc-CCCCceEEEEEcccccccCCCccceEEEeccccccHHHHHHHHhccccCCCCCCEEEEECcC
Confidence 4567787 5 68899999999999999999911 13579999999993 2 3355555544
No 127
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.99 E-value=0.011 Score=53.93 Aligned_cols=57 Identities=19% Similarity=0.405 Sum_probs=41.8
Q ss_pred HHHHHHHHhCCCccEEEEccccccCCCcCCC--------------------CCh-------hhHHhhhcccccCCCcceE
Q 048509 42 PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA--------------------AYI-------KTYIHRAGPRARAGQNGHC 94 (168)
Q Consensus 42 ~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v--------------------~~~-------~~yihr~GR~gR~g~~g~~ 94 (168)
.+++..-- .|.-.++|||++|+-.|.+|++ +.. .+--||.||+||.| +|.|
T Consensus 613 ~kiFq~a~-~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~c 690 (1042)
T KOG0924|consen 613 AKIFQKAE-GGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTC 690 (1042)
T ss_pred hhhcccCC-CCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccce
Confidence 33344344 5667899999999999999998 011 23358888888864 8999
Q ss_pred EEEeeC
Q 048509 95 FTLLPK 100 (168)
Q Consensus 95 ~~~~~~ 100 (168)
+-+++.
T Consensus 691 YRlYTe 696 (1042)
T KOG0924|consen 691 YRLYTE 696 (1042)
T ss_pred eeehhh
Confidence 999986
No 128
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.96 E-value=0.022 Score=52.09 Aligned_cols=59 Identities=7% Similarity=0.146 Sum_probs=41.1
Q ss_pred HHHHHHHHhCCCccEEEEcc----ccccCCC------------cCCCC----ChhhHHhhhcccccCCCcceEEEEeeCC
Q 048509 42 PKTLKAFRGKGHMQVLVCSD----AMTSGMD------------VERAA----YIKTYIHRAGPRARAGQNGHCFTLLPKD 101 (168)
Q Consensus 42 ~~~~~~F~~~~~~~iLvaTd----v~~rGlD------------i~~v~----~~~~yihr~GR~gR~g~~g~~~~~~~~~ 101 (168)
+.+++.|. . +.+|||+|. +++-|+. .|+.. ....+.|-+||+||++..|.++....|+
T Consensus 462 d~~l~~~~-~-~~~IlVGTqgaepm~~g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~p~ 539 (665)
T PRK14873 462 DQVVDTVD-A-GPALVVATPGAEPRVEGGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAESS 539 (665)
T ss_pred HHHHHhhc-c-CCCEEEECCCCcccccCCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCC
Confidence 66788887 6 899999999 6662222 22222 2355577789999999999998875444
Q ss_pred c
Q 048509 102 E 102 (168)
Q Consensus 102 ~ 102 (168)
.
T Consensus 540 ~ 540 (665)
T PRK14873 540 L 540 (665)
T ss_pred C
Confidence 3
No 129
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=95.66 E-value=0.017 Score=52.11 Aligned_cols=51 Identities=18% Similarity=0.415 Sum_probs=42.0
Q ss_pred CCCccEEEEccccccCCCcCCC---------------------------CChhhHHhhhcccccCCCcceEEEEeeCCc
Q 048509 51 KGHMQVLVCSDAMTSGMDVERA---------------------------AYIKTYIHRAGPRARAGQNGHCFTLLPKDE 102 (168)
Q Consensus 51 ~~~~~iLvaTdv~~rGlDi~~v---------------------------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~ 102 (168)
.|.-.|+++|++++--+.||+| -+-.+=.||.||+||. .+|.|+=+++..+
T Consensus 314 ~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt-~pGkcyRLYte~~ 391 (674)
T KOG0922|consen 314 PGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRT-GPGKCYRLYTESA 391 (674)
T ss_pred CCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCC-CCceEEEeeeHHH
Confidence 3567899999999999999999 0125567899999997 5899999998777
No 130
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=95.58 E-value=0.077 Score=48.08 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=35.7
Q ss_pred CCcEEEEcCCcchH------------------------HHHHHHHHhCCCc-cEEEEccccccCCCcCCC
Q 048509 28 GEKFIVFASSVANS------------------------PKTLKAFRGKGHM-QVLVCSDAMTSGMDVERA 72 (168)
Q Consensus 28 ~~~~iIF~~t~~~~------------------------~~~~~~F~~~~~~-~iLvaTdv~~rGlDi~~v 72 (168)
++.++||++|.... ...+++|+ .+.- .++|+|..+++|+|+|+=
T Consensus 479 ~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~~~~l~~f~-~~~~~~~lv~~gsf~EGVD~~g~ 547 (654)
T COG1199 479 PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDEREELLEKFK-ASGEGLILVGGGSFWEGVDFPGD 547 (654)
T ss_pred CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcHHHHHHHHH-HhcCCeEEEeeccccCcccCCCC
Confidence 45889998886555 56888898 6554 899999999999999875
No 131
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=95.29 E-value=0.14 Score=48.15 Aligned_cols=43 Identities=21% Similarity=0.303 Sum_probs=29.2
Q ss_pred hhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCC
Q 048509 80 HRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123 (168)
Q Consensus 80 hr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (168)
|--||+||-|.+|.+-.|++=+|+-.- .+--..+.++++.++.
T Consensus 667 QLRGRaGRQGDPGsSrFflSLEDdL~r-~Fg~dri~~~~~~l~~ 709 (939)
T PRK12902 667 QLRGRAGRQGDPGSTRFFLSLEDNLLR-IFGGDRVAGLMNAFRV 709 (939)
T ss_pred HhhcccccCCCCCcceEEEEechHHHH-HhCcHHHHHHHHHcCC
Confidence 445899999999999999986664431 1112356666676664
No 132
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=95.11 E-value=0.13 Score=37.92 Aligned_cols=41 Identities=12% Similarity=0.324 Sum_probs=33.2
Q ss_pred EEEEcCCcch--HHHHHHHHHhCCC-ccEEEEccccccCCCcCCC
Q 048509 31 FIVFASSVAN--SPKTLKAFRGKGH-MQVLVCSDAMTSGMDVERA 72 (168)
Q Consensus 31 ~iIF~~t~~~--~~~~~~~F~~~~~-~~iLvaTdv~~rGlDi~~v 72 (168)
-.||+.+... ...++++|+ ... ..||++|.-+++|+|+|+-
T Consensus 24 ~~i~~e~~~~~~~~~~l~~f~-~~~~~~iL~~~~~~~EGiD~~g~ 67 (141)
T smart00492 24 LLLLVQGEDGKETGKLLEKYV-EACENAILLATARFSEGVDFPGD 67 (141)
T ss_pred CeEEEeCCChhHHHHHHHHHH-HcCCCEEEEEccceecceecCCC
Confidence 4678877654 389999999 654 3799999889999999975
No 133
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=95.10 E-value=0.12 Score=45.90 Aligned_cols=100 Identities=23% Similarity=0.297 Sum_probs=71.9
Q ss_pred EcCCCCHHHHHHHHHhcc--CCCcEEEEcCCcchH---------------------HHHHHHHHhCCCccEEEEcccccc
Q 048509 9 ICESKLKPIYLIPLLRNL--GGEKFIVFASSVANS---------------------PKTLKAFRGKGHMQVLVCSDAMTS 65 (168)
Q Consensus 9 ~~~~~~K~~~L~~ll~~~--~~~~~iIF~~t~~~~---------------------~~~~~~F~~~~~~~iLvaTdv~~r 65 (168)
++....|+.+-.-|++-+ .++++|||....-.. -++++.|+.+..++-+.-+-|.--
T Consensus 522 yvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDt 601 (776)
T KOG1123|consen 522 YVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDT 601 (776)
T ss_pred eecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCCceEECCCchhHHHHHHHhcccCCccceEEEeeccCc
Confidence 344456666655566543 468999998765433 789999996678899999999999
Q ss_pred CCCcCCC----------CChhhHHhhhcccccCCC------cceEEEEeeCCchhHHHH
Q 048509 66 GMDVERA----------AYIKTYIHRAGPRARAGQ------NGHCFTLLPKDEDKLLYM 108 (168)
Q Consensus 66 GlDi~~v----------~~~~~yihr~GR~gR~g~------~g~~~~~~~~~~~~~~~~ 108 (168)
.+|+|+. .+-.+--||.||.-|+.+ ...-+++++.......|-
T Consensus 602 SiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YS 660 (776)
T KOG1123|consen 602 SIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYS 660 (776)
T ss_pred cccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhh
Confidence 9999988 334666899999988763 345677777666444443
No 134
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=94.81 E-value=0.11 Score=49.27 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=27.1
Q ss_pred HHHHHHHHhCCCccEEEEccccccCCCcCCC
Q 048509 42 PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA 72 (168)
Q Consensus 42 ~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v 72 (168)
.+.++.|+ .++-.||++|..+..|+|+|+-
T Consensus 794 ~~l~~~F~-~~~~~iLlG~~sFwEGVD~pg~ 823 (928)
T PRK08074 794 ARLTKQFQ-QFDKAILLGTSSFWEGIDIPGD 823 (928)
T ss_pred HHHHHHHH-hcCCeEEEecCcccCccccCCC
Confidence 56788999 8888999999999999999975
No 135
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=94.13 E-value=0.21 Score=45.99 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=33.4
Q ss_pred CCcEEEEcCCcchH-----------------------HHHHHHHHh---CCCccEEEEccccccCCCcCCC
Q 048509 28 GEKFIVFASSVANS-----------------------PKTLKAFRG---KGHMQVLVCSDAMTSGMDVERA 72 (168)
Q Consensus 28 ~~~~iIF~~t~~~~-----------------------~~~~~~F~~---~~~~~iLvaTdv~~rGlDi~~v 72 (168)
.+.++||++|.... .+.++.|+. .++-.||++|..+..|||+|+=
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd 604 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGDQPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGD 604 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCCchHHHHHHHHHHHhccCCCeEEEEeccccccccCCCC
Confidence 34578888776544 566766661 3677899999999999999864
No 136
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=93.97 E-value=0.24 Score=46.45 Aligned_cols=44 Identities=20% Similarity=0.269 Sum_probs=37.0
Q ss_pred CCCcEEEEcCCcchH-----------------------HHHHHHHHhCCCccEEEEccccccCCCcCC
Q 048509 27 GGEKFIVFASSVANS-----------------------PKTLKAFRGKGHMQVLVCSDAMTSGMDVER 71 (168)
Q Consensus 27 ~~~~~iIF~~t~~~~-----------------------~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~ 71 (168)
..++++|+++|.... .+++++|+ +++-.||++|+.+.+|+|+|.
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~~~l~Qg~~~~~~~l~~~F~-~~~~~vLlG~~sFwEGVD~p~ 712 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQVSHLAQEKNGTAYNIKKRFD-RGEQQILLGLGSFWEGVDFVQ 712 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCCcEEEeCCCccHHHHHHHHH-cCCCeEEEecchhhCCCCCCC
Confidence 356888888877665 55789999 988899999999999999973
No 137
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=93.79 E-value=0.45 Score=44.60 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=25.6
Q ss_pred cCCCCHHHHHHHHHhc-----------cCCCcEEEEcCCcchH
Q 048509 10 CESKLKPIYLIPLLRN-----------LGGEKFIVFASSVANS 41 (168)
Q Consensus 10 ~~~~~K~~~L~~ll~~-----------~~~~~~iIF~~t~~~~ 41 (168)
.++..|...|.++|++ .+++++||||+...+|
T Consensus 266 lEe~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~ 308 (814)
T TIGR00596 266 LEENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTC 308 (814)
T ss_pred cccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHH
Confidence 3578899999999864 2346899999999888
No 138
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=93.71 E-value=0.07 Score=49.62 Aligned_cols=91 Identities=15% Similarity=0.154 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHHHhcc--CCCcEEEEcCCcchH------------------------HHHHHHHHhCCCccEEEEccccc
Q 048509 11 ESKLKPIYLIPLLRNL--GGEKFIVFASSVANS------------------------PKTLKAFRGKGHMQVLVCSDAMT 64 (168)
Q Consensus 11 ~~~~K~~~L~~ll~~~--~~~~~iIF~~t~~~~------------------------~~~~~~F~~~~~~~iLvaTdv~~ 64 (168)
...+|+.+++.-+... .+.|+||-+.+.... +.-+-.+. -..-.|-|||++|+
T Consensus 410 t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~Iia~A-G~~gaVTiATNMAG 488 (822)
T COG0653 410 TEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAEIIAQA-GQPGAVTIATNMAG 488 (822)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHHHHhhc-CCCCcccccccccc
Confidence 3456676666666543 467888888887776 11122222 22335679999999
Q ss_pred cCCCcCCCCC------------------hhhH-H-hhhcccccCCCcceEEEEeeCCc
Q 048509 65 SGMDVERAAY------------------IKTY-I-HRAGPRARAGQNGHCFTLLPKDE 102 (168)
Q Consensus 65 rGlDi~~v~~------------------~~~y-i-hr~GR~gR~g~~g~~~~~~~~~~ 102 (168)
||-||.--.+ -..+ . |--||+||-|-+|.+--|++-+|
T Consensus 489 RGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 489 RGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred CCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 9999865432 1222 2 44599999999999888877655
No 139
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=93.66 E-value=0.21 Score=48.32 Aligned_cols=90 Identities=18% Similarity=0.269 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHhccC----------------CCcEEEEcCCcchH-----------------------------HHHHH
Q 048509 12 SKLKPIYLIPLLRNLG----------------GEKFIVFASSVANS-----------------------------PKTLK 46 (168)
Q Consensus 12 ~~~K~~~L~~ll~~~~----------------~~~~iIF~~t~~~~-----------------------------~~~~~ 46 (168)
...|+.+|..+|.+-+ ..+++|||.-+... .++.+
T Consensus 1308 hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~ 1387 (1549)
T KOG0392|consen 1308 HSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVE 1387 (1549)
T ss_pred hchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHH
Confidence 3468888999886431 24899999988877 89999
Q ss_pred HHHhCC-CccEE-EEccccccCCCcCCC---------CChhhHHhhhcccccCCCcc--eEEEEeeCCc
Q 048509 47 AFRGKG-HMQVL-VCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNG--HCFTLLPKDE 102 (168)
Q Consensus 47 ~F~~~~-~~~iL-vaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g--~~~~~~~~~~ 102 (168)
+|. ++ .++|| .+|.|.+-|+++.+. .++..=+|-+.|+-|-|++- .++=|++.+.
T Consensus 1388 ~FN-~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGT 1455 (1549)
T KOG0392|consen 1388 RFN-EDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGT 1455 (1549)
T ss_pred Hhc-CCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhccc
Confidence 999 87 88988 788999999999988 33444577778877877553 4566666554
No 140
>PF13871 Helicase_C_4: Helicase_C-like
Probab=93.56 E-value=0.35 Score=39.66 Aligned_cols=57 Identities=23% Similarity=0.284 Sum_probs=46.2
Q ss_pred HHHHHHHHhCCCccEEEEccccccCCCcCCC-----------------CChhhHHhhhcccccCCCc-ceEEEEee
Q 048509 42 PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA-----------------AYIKTYIHRAGPRARAGQN-GHCFTLLP 99 (168)
Q Consensus 42 ~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v-----------------~~~~~yihr~GR~gR~g~~-g~~~~~~~ 99 (168)
....+.|. +|+.+|+|.|+.++-|+-+..- .+++..+|..||+-|.|+. .-.+.++.
T Consensus 51 ~~e~~~F~-~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~ 125 (278)
T PF13871_consen 51 IAEKQAFM-DGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLV 125 (278)
T ss_pred HHHHHHHh-CCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEee
Confidence 46777999 9999999999999999988753 6689999999999999863 33344443
No 141
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=93.31 E-value=0.43 Score=35.08 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=37.2
Q ss_pred HHHHHHHhccCC--CcEEEEcCCcch--HHHHHHHHHhCCCc---cEEEEccc--cccCCCcCCC
Q 048509 17 IYLIPLLRNLGG--EKFIVFASSVAN--SPKTLKAFRGKGHM---QVLVCSDA--MTSGMDVERA 72 (168)
Q Consensus 17 ~~L~~ll~~~~~--~~~iIF~~t~~~--~~~~~~~F~~~~~~---~iLvaTdv--~~rGlDi~~v 72 (168)
+.+...++.... ...-||+.+... ..+++++|+ ...- .||+++.- ++.|+|+|+-
T Consensus 5 ~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~-~~~~~~g~iL~~v~~G~~~EGiD~~g~ 68 (142)
T smart00491 5 EQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYS-AACEARGALLLAVARGKVSEGIDFPDD 68 (142)
T ss_pred HHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHH-HhcCCCCEEEEEEeCCeeecceecCCC
Confidence 344445543321 124578877653 368999999 7544 69988887 9999999974
No 142
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=92.08 E-value=0.13 Score=49.16 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=33.1
Q ss_pred CCccEEEEccccccCCCcCCC------CChhhHHhhhcccccCCC
Q 048509 52 GHMQVLVCSDAMTSGMDVERA------AYIKTYIHRAGPRARAGQ 90 (168)
Q Consensus 52 ~~~~iLvaTdv~~rGlDi~~v------~~~~~yihr~GR~gR~g~ 90 (168)
+...|+|+|+|.+-|+|+.-- ..+.+.|||+||+-|.+.
T Consensus 837 ~~~~i~v~Tqv~E~g~D~dfd~~~~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 837 NHLFIVLATPVEEVGRDHDYDWAIADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CCCeEEEEeeeEEEEecccCCeeeeccCcHHHHHHHhhccccccc
Confidence 467899999999999987532 778999999999998774
No 143
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=90.11 E-value=0.75 Score=44.79 Aligned_cols=85 Identities=18% Similarity=0.308 Sum_probs=57.3
Q ss_pred CHHHHHHHHHhccC--CCcEEEEcCCcchH--------------------------HHHHHHHHhCCC-ccEEEEccccc
Q 048509 14 LKPIYLIPLLRNLG--GEKFIVFASSVANS--------------------------PKTLKAFRGKGH-MQVLVCSDAMT 64 (168)
Q Consensus 14 ~K~~~L~~ll~~~~--~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~-~~iLvaTdv~~ 64 (168)
-|++.|.-||+.+. +.+++||+.-.... +..+++|..... ...+++|-...
T Consensus 1260 GKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSgg 1339 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGG 1339 (1958)
T ss_pred chHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCc
Confidence 46666666666443 45899998644333 778889983233 35567888888
Q ss_pred cCCCcCCCCC---------------hhhHHhhhcccccCCCcceEEEEeeCCc
Q 048509 65 SGMDVERAAY---------------IKTYIHRAGPRARAGQNGHCFTLLPKDE 102 (168)
Q Consensus 65 rGlDi~~v~~---------------~~~yihr~GR~gR~g~~g~~~~~~~~~~ 102 (168)
-||++-+.++ +++..||||+| +.=+.|=|++...
T Consensus 1340 vGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqt----RDVHIYRLISe~T 1388 (1958)
T KOG0391|consen 1340 VGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT----RDVHIYRLISERT 1388 (1958)
T ss_pred cccccccCceEEEecCCCCchhhhHHHHHHHhhcCc----cceEEEEeeccch
Confidence 8998887722 47789999997 3446677776443
No 144
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.49 E-value=2.6 Score=38.79 Aligned_cols=30 Identities=20% Similarity=0.451 Sum_probs=24.2
Q ss_pred HHHHHHHHhC----CCccEEEEc--cccccCCCcCCC
Q 048509 42 PKTLKAFRGK----GHMQVLVCS--DAMTSGMDVERA 72 (168)
Q Consensus 42 ~~~~~~F~~~----~~~~iLvaT--dv~~rGlDi~~v 72 (168)
..++++|+ . +.-.||+|+ .-++.|||+++=
T Consensus 568 ~~~l~~f~-~~~~~~~gavL~av~gGk~sEGIDf~~~ 603 (705)
T TIGR00604 568 SDALERYK-QAVSEGRGAVLLSVAGGKVSEGIDFCDD 603 (705)
T ss_pred HHHHHHHH-HHHhcCCceEEEEecCCcccCccccCCC
Confidence 56788886 4 455799999 889999999875
No 145
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=84.96 E-value=2 Score=40.14 Aligned_cols=88 Identities=19% Similarity=0.229 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHhcc--CCCcEEEEcCCcchH---------------------------HHHHHHHHhCCCc--cEEEEc
Q 048509 12 SKLKPIYLIPLLRNL--GGEKFIVFASSVANS---------------------------PKTLKAFRGKGHM--QVLVCS 60 (168)
Q Consensus 12 ~~~K~~~L~~ll~~~--~~~~~iIF~~t~~~~---------------------------~~~~~~F~~~~~~--~iLvaT 60 (168)
..-|+.+|..+|... .+.++++|..|+... ...+++|. .++. -.|++|
T Consensus 528 ~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fn-e~~s~~VFLLTT 606 (923)
T KOG0387|consen 528 RSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFN-EDESIFVFLLTT 606 (923)
T ss_pred hcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhc-CCCceEEEEEEe
Confidence 456899999999865 367999999887655 88889999 6653 346999
Q ss_pred cccccCCCcCCC---------CChhhHHhhhcccccCCCcceE--EEEeeC
Q 048509 61 DAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHC--FTLLPK 100 (168)
Q Consensus 61 dv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~--~~~~~~ 100 (168)
-|.+-|+++... .++.+=.|-.-|+-|.|+.-.+ |=|++.
T Consensus 607 rvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~ 657 (923)
T KOG0387|consen 607 RVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTA 657 (923)
T ss_pred cccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecC
Confidence 999999999887 4567778888899998865443 334543
No 146
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=84.66 E-value=0.8 Score=40.66 Aligned_cols=47 Identities=21% Similarity=0.461 Sum_probs=36.3
Q ss_pred ccEEEEccccccCCCcCCC---------------------------CChhhHHhhhcccccCCCcceEEEEeeCC
Q 048509 54 MQVLVCSDAMTSGMDVERA---------------------------AYIKTYIHRAGPRARAGQNGHCFTLLPKD 101 (168)
Q Consensus 54 ~~iLvaTdv~~rGlDi~~v---------------------------~~~~~yihr~GR~gR~g~~g~~~~~~~~~ 101 (168)
-+|+|+|++++--+-++.| -+-.+-.||.||+||. ++|.|+.+++.+
T Consensus 314 RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 314 RKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred ceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 4799999999988888887 0014456888888885 799999999743
No 147
>COG4889 Predicted helicase [General function prediction only]
Probab=80.87 E-value=1.1 Score=42.57 Aligned_cols=52 Identities=15% Similarity=0.297 Sum_probs=40.2
Q ss_pred HHHhCCCccEEEEccccccCCCcCCC---------CChhhHHhhhcccccC---CCcceEEEEee
Q 048509 47 AFRGKGHMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARA---GQNGHCFTLLP 99 (168)
Q Consensus 47 ~F~~~~~~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~---g~~g~~~~~~~ 99 (168)
.|. ..+.+||--.-.++.|+|+|.+ .+..+.+|-+||+.|- ..-|..|+-+.
T Consensus 523 ~~~-~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIa 586 (1518)
T COG4889 523 TFE-PNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIA 586 (1518)
T ss_pred CCC-cchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEec
Confidence 344 6678888888889999999998 4568889999999983 24577666553
No 148
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=80.80 E-value=6.5 Score=36.90 Aligned_cols=87 Identities=18% Similarity=0.274 Sum_probs=63.9
Q ss_pred CCCHHHHHHHHHhccC--CCcEEEEcCCcchH--------------------------HHHHHHHHhCCCcc-EEEEccc
Q 048509 12 SKLKPIYLIPLLRNLG--GEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQ-VLVCSDA 62 (168)
Q Consensus 12 ~~~K~~~L~~ll~~~~--~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~-iLvaTdv 62 (168)
...|...|..||.+.. +.+++||-.--.-. +..+..|.....+. .|++|-.
T Consensus 759 dSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKA 838 (941)
T KOG0389|consen 759 DSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKA 838 (941)
T ss_pred hhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeecc
Confidence 4568889999998664 47999996422211 88999999334444 4689999
Q ss_pred cccCCCcCCC---------------CChhhHHhhhcccccCCCcceEEEEeeCCc
Q 048509 63 MTSGMDVERA---------------AYIKTYIHRAGPRARAGQNGHCFTLLPKDE 102 (168)
Q Consensus 63 ~~rGlDi~~v---------------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~ 102 (168)
.+-||++... ..+++=.||+|.+ ++=+++-|+++..
T Consensus 839 GG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQt----kpVtV~rLItk~T 889 (941)
T KOG0389|consen 839 GGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQT----KPVTVYRLITKST 889 (941)
T ss_pred CcceecccccceEEEeecCCCCcccchhHHHHHhhCCc----ceeEEEEEEecCc
Confidence 9999998766 2246678888775 5678899998777
No 149
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=80.39 E-value=0.73 Score=45.95 Aligned_cols=46 Identities=22% Similarity=0.583 Sum_probs=40.8
Q ss_pred HHHHHHHHhCCCccEEEEccccccCCCcCCC---------CChhhHHhhhcccccC
Q 048509 42 PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARA 88 (168)
Q Consensus 42 ~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~ 88 (168)
.+++..|. ..++++|++|.++..|+|++.+ .....|+|+.||+-++
T Consensus 344 ~~vl~~~~-~~~ln~L~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 344 AEVLRRFH-FHELNLLIATSVLEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred HHHHHHHh-hhhhhHHHHHHHHHhhcchhhhhhheeccCcchHHHHHHhhcccccc
Confidence 88999999 9999999999999999999998 4468899999986544
No 150
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=80.32 E-value=13 Score=34.21 Aligned_cols=51 Identities=18% Similarity=0.303 Sum_probs=36.9
Q ss_pred HHHHHHHhccCCCcEEEEcCCcchH------------------------HHHHHHHHhCC----CccEEEEccccccCCC
Q 048509 17 IYLIPLLRNLGGEKFIVFASSVANS------------------------PKTLKAFRGKG----HMQVLVCSDAMTSGMD 68 (168)
Q Consensus 17 ~~L~~ll~~~~~~~~iIF~~t~~~~------------------------~~~~~~F~~~~----~~~iLvaTdv~~rGlD 68 (168)
..+..++....+ .++|-+.|.... ...+++|+ .. .-.||++|+.+-.|+|
T Consensus 460 ~~~~~~~~~~~G-~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~~~~~l~~~f~-~~~~~~~~~vL~gt~sfweGvD 537 (636)
T TIGR03117 460 LSTAAILRKAQG-GTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKNRLASAEQQFL-ALYANGIQPVLIAAGGAWTGID 537 (636)
T ss_pred HHHHHHHHHcCC-CEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCccHHHHHHHHH-HhhcCCCCcEEEeCCccccccc
Confidence 455555554444 555555555544 45799999 74 7899999999999999
Q ss_pred c
Q 048509 69 V 69 (168)
Q Consensus 69 i 69 (168)
+
T Consensus 538 v 538 (636)
T TIGR03117 538 L 538 (636)
T ss_pred c
Confidence 9
No 151
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=79.02 E-value=5.3 Score=31.95 Aligned_cols=70 Identities=16% Similarity=0.254 Sum_probs=47.2
Q ss_pred cEEEEcCCcchHHHHHHHHHhCCC----ccEEEEccccccCCCcCCC---------CChhhHHhhhcccc-cCCCcceEE
Q 048509 30 KFIVFASSVANSPKTLKAFRGKGH----MQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRA-RAGQNGHCF 95 (168)
Q Consensus 30 ~~iIF~~t~~~~~~~~~~F~~~~~----~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~g-R~g~~g~~~ 95 (168)
-.|+-+||...... -.|. .+. ..|+|.=+.++||+-++++ ...+++.||.=.-| |.|=...|=
T Consensus 111 ~~v~~vNS~~~~~~--ldy~-~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~dl~R 187 (239)
T PF10593_consen 111 IEVVVVNSGSSDDS--LDYD-DGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYEDLCR 187 (239)
T ss_pred ceEEEEeCCCcccc--cccc-ccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCcccccceE
Confidence 56777776554433 4555 444 8999999999999999999 44566666632255 555566677
Q ss_pred EEeeCCc
Q 048509 96 TLLPKDE 102 (168)
Q Consensus 96 ~~~~~~~ 102 (168)
++++++-
T Consensus 188 i~~~~~l 194 (239)
T PF10593_consen 188 IYMPEEL 194 (239)
T ss_pred EecCHHH
Confidence 7765444
No 152
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=76.86 E-value=3.3 Score=38.70 Aligned_cols=90 Identities=19% Similarity=0.280 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHhcc--CCCcEEEEcCCcchH--------------------------HHHHHHHHhCC---CccEEEEc
Q 048509 12 SKLKPIYLIPLLRNL--GGEKFIVFASSVANS--------------------------PKTLKAFRGKG---HMQVLVCS 60 (168)
Q Consensus 12 ~~~K~~~L~~ll~~~--~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~---~~~iLvaT 60 (168)
..-|+.+|-+||... .+.+++||-.--... ..+++.|. .. ..-.|++|
T Consensus 469 nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn-~~~s~~FiFlLST 547 (971)
T KOG0385|consen 469 NSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFN-APPSEKFIFLLST 547 (971)
T ss_pred cCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcC-CCCcceEEEEEec
Confidence 456788888888765 356899986432222 88899998 53 34567999
Q ss_pred cccccCCCcCCC---------CChhhHHhhhcccccCCCcc--eEEEEeeCCc
Q 048509 61 DAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNG--HCFTLLPKDE 102 (168)
Q Consensus 61 dv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g--~~~~~~~~~~ 102 (168)
-+.+-||++... -+++.=+|-+.|+-|-|+.. .++-|++.+.
T Consensus 548 RAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 548 RAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENT 600 (971)
T ss_pred cccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccch
Confidence 999999998877 33555567777777777544 4555666544
No 153
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=76.05 E-value=2.2 Score=41.58 Aligned_cols=89 Identities=20% Similarity=0.319 Sum_probs=62.8
Q ss_pred CHHHHHHHHHhccC--CCcEEEEcCCcchH--------------------------HHHHHHHHh--CCCccEEEEcccc
Q 048509 14 LKPIYLIPLLRNLG--GEKFIVFASSVANS--------------------------PKTLKAFRG--KGHMQVLVCSDAM 63 (168)
Q Consensus 14 ~K~~~L~~ll~~~~--~~~~iIF~~t~~~~--------------------------~~~~~~F~~--~~~~~iLvaTdv~ 63 (168)
-|+-+|-+||..+. +.+++||-.-.... +.+|..|.. +.....|+||-+.
T Consensus 683 GKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAG 762 (1373)
T KOG0384|consen 683 GKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAG 762 (1373)
T ss_pred CcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccC
Confidence 45555566665543 46999997644333 889999984 3456789999999
Q ss_pred ccCCCcCCC---------CChhhHHhhhcccccCCCcc--eEEEEeeCCc
Q 048509 64 TSGMDVERA---------AYIKTYIHRAGPRARAGQNG--HCFTLLPKDE 102 (168)
Q Consensus 64 ~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g--~~~~~~~~~~ 102 (168)
+-||++-.. -+++.=+|-..|+-|-|++- .+|=|++.+.
T Consensus 763 GLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 763 GLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred cccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 999998877 34566677777777777544 4677777665
No 154
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=66.69 E-value=12 Score=35.31 Aligned_cols=50 Identities=10% Similarity=0.211 Sum_probs=37.1
Q ss_pred CCccEEEEccccccCCCcCCC---------------CChhhHHhhhcccccCCCcceEEEEeeCCc
Q 048509 52 GHMQVLVCSDAMTSGMDVERA---------------AYIKTYIHRAGPRARAGQNGHCFTLLPKDE 102 (168)
Q Consensus 52 ~~~~iLvaTdv~~rGlDi~~v---------------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~ 102 (168)
++.+|++=|++..-|+++.+. .+..+..|.+||+-.- .....+..+++..
T Consensus 325 ~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~~ 389 (824)
T PF02399_consen 325 KKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDASG 389 (824)
T ss_pred cceeEEEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEeccc
Confidence 468999999999999999877 5567789999997443 3445555555443
No 155
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=65.28 E-value=23 Score=32.67 Aligned_cols=88 Identities=19% Similarity=0.224 Sum_probs=59.3
Q ss_pred CHHHHHHHHH-hcc--CCC--cEEEEcCCcchH--------------------------HHHHHHHHhCC--CccEEEEc
Q 048509 14 LKPIYLIPLL-RNL--GGE--KFIVFASSVANS--------------------------PKTLKAFRGKG--HMQVLVCS 60 (168)
Q Consensus 14 ~K~~~L~~ll-~~~--~~~--~~iIF~~t~~~~--------------------------~~~~~~F~~~~--~~~iLvaT 60 (168)
.|...+.++| ... ... +++||+...... ...+++|. .+ ..-.|++|
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~-~~~~~~v~lls~ 770 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFN-ADEEEKVFLLSL 770 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhh-cCCCCceEEEEe
Confidence 6777787777 322 234 788888765555 78999999 85 44555777
Q ss_pred cccccCCCcCCC---------CChhhHHhhhcccccCCCc--ceEEEEeeCCc
Q 048509 61 DAMTSGMDVERA---------AYIKTYIHRAGPRARAGQN--GHCFTLLPKDE 102 (168)
Q Consensus 61 dv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~--g~~~~~~~~~~ 102 (168)
...+.|++.... .++....|.+.|+-|.|+. =.++-|++.+.
T Consensus 771 kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 771 KAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred cccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 899999998855 4456666666666666644 34555565444
No 156
>PRK09401 reverse gyrase; Reviewed
Probab=63.88 E-value=8.9 Score=37.67 Aligned_cols=30 Identities=27% Similarity=0.526 Sum_probs=23.7
Q ss_pred CChhhHHhhhcccccC--C--CcceEEEEeeCCc
Q 048509 73 AYIKTYIHRAGPRARA--G--QNGHCFTLLPKDE 102 (168)
Q Consensus 73 ~~~~~yihr~GR~gR~--g--~~g~~~~~~~~~~ 102 (168)
+|+.+|||-.|||.|. | ..|.+++|++...
T Consensus 517 pd~~tYiqasGRtSrl~~gg~t~glsv~l~dd~~ 550 (1176)
T PRK09401 517 PDVTTYIQASGRTSRLYAGGLTKGLSVLLVDDEK 550 (1176)
T ss_pred cCcchheecccchhcccCCCccceeEEEEecCHH
Confidence 7888999999999994 4 4777777776554
No 157
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=63.62 E-value=32 Score=34.39 Aligned_cols=57 Identities=19% Similarity=0.312 Sum_probs=36.0
Q ss_pred HHHHH-HHHhCCCccEEEEccc-----------cccCCCcCCC-------CChhhHHhhhcccccCCCcceEEEEeeCCc
Q 048509 42 PKTLK-AFRGKGHMQVLVCSDA-----------MTSGMDVERA-------AYIKTYIHRAGPRARAGQNGHCFTLLPKDE 102 (168)
Q Consensus 42 ~~~~~-~F~~~~~~~iLvaTdv-----------~~rGlDi~~v-------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~ 102 (168)
+.+.+ -|. .|.+.|+|...- ...|-.+=+. -.+....|++|++.| .|.|+.+.....
T Consensus 1420 ~~iv~~l~e-~g~i~v~v~s~~~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~ 1495 (1674)
T KOG0951|consen 1420 QEIVQQLFE-AGAIQVCVMSRDCYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPK 1495 (1674)
T ss_pred HHHHHHHHh-cCcEEEEEEEcccccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCch
Confidence 33433 566 889998876542 2223322222 224667999999877 578888887776
No 158
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=60.70 E-value=14 Score=34.69 Aligned_cols=57 Identities=21% Similarity=0.176 Sum_probs=44.2
Q ss_pred HHHHHHHHhCCCc--c-EEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCc--ceEEEEee
Q 048509 42 PKTLKAFRGKGHM--Q-VLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQN--GHCFTLLP 99 (168)
Q Consensus 42 ~~~~~~F~~~~~~--~-iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~--g~~~~~~~ 99 (168)
+++++.|. +... . .|.+|-+.+.||++-+. -++..=.|-++|+-|.|++ -++|-|++
T Consensus 635 q~~vd~FN-~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLla 705 (776)
T KOG0390|consen 635 QKLVDTFN-DPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLA 705 (776)
T ss_pred HHHHHhcc-CCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeec
Confidence 89999999 6443 3 45777888999997766 5678889999999999965 55566665
No 159
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=56.57 E-value=93 Score=28.21 Aligned_cols=72 Identities=19% Similarity=0.247 Sum_probs=45.0
Q ss_pred CHHHHHHHHHhc------cCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccE-EEEc
Q 048509 14 LKPIYLIPLLRN------LGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQV-LVCS 60 (168)
Q Consensus 14 ~K~~~L~~ll~~------~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~i-LvaT 60 (168)
.|...+.+.|-. ..+.+.+|||....-. ....+.|..+.++.| +++-
T Consensus 472 aK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsI 551 (689)
T KOG1000|consen 472 AKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSI 551 (689)
T ss_pred cccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEE
Confidence 345555555544 2457999999865543 566677873334443 3455
Q ss_pred cccccCCCcCCC---------C------ChhhHHhhhccc
Q 048509 61 DAMTSGMDVERA---------A------YIKTYIHRAGPR 85 (168)
Q Consensus 61 dv~~rGlDi~~v---------~------~~~~yihr~GR~ 85 (168)
..++.|+++... . .+++=+||+|.+
T Consensus 552 tA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQk 591 (689)
T KOG1000|consen 552 TAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQK 591 (689)
T ss_pred eecccceeeeccceEEEEEecCCCceEEechhhhhhcccc
Confidence 677899998866 1 246667777765
No 160
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=50.70 E-value=1.8e+02 Score=25.68 Aligned_cols=73 Identities=12% Similarity=0.185 Sum_probs=46.6
Q ss_pred CCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccEEEEcccc-------ccCCCcCCC-
Q 048509 27 GGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQVLVCSDAM-------TSGMDVERA- 72 (168)
Q Consensus 27 ~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~iLvaTdv~-------~rGlDi~~v- 72 (168)
....++||++|--.- .++-..|. .|+.+||+.|.=+ -||+. +|
T Consensus 299 ~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~-~G~~~iLL~TER~HFfrRy~irGi~--~vi 375 (442)
T PF06862_consen 299 KMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFF-HGRKPILLYTERFHFFRRYRIRGIR--HVI 375 (442)
T ss_pred CCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHH-cCCceEEEEEhHHhhhhhceecCCc--EEE
Confidence 346899999875433 78888999 9999999999733 34432 22
Q ss_pred -----CChhhHHhhhcccccC------CCcceEEEEeeCCc
Q 048509 73 -----AYIKTYIHRAGPRARA------GQNGHCFTLLPKDE 102 (168)
Q Consensus 73 -----~~~~~yihr~GR~gR~------g~~g~~~~~~~~~~ 102 (168)
.++.-|-.-+.-.+.. .....+.++++.-|
T Consensus 376 FY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D 416 (442)
T PF06862_consen 376 FYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYD 416 (442)
T ss_pred EECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhH
Confidence 3444443333322222 13577888888777
No 161
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=48.93 E-value=2.1e+02 Score=26.12 Aligned_cols=96 Identities=7% Similarity=0.122 Sum_probs=61.1
Q ss_pred EEEEEcCCCCHH------HHHHHHHhccC-CCcEEEEcCCcchH-HHHHHHHHhCCCccEEEEccccccCCCcCCC----
Q 048509 5 LSPQICESKLKP------IYLIPLLRNLG-GEKFIVFASSVANS-PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA---- 72 (168)
Q Consensus 5 ~~~~~~~~~~K~------~~L~~ll~~~~-~~~~iIF~~t~~~~-~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v---- 72 (168)
-.|++.++.+.+ ..+..+..... ..++|+|-+|-..- +..-+.|- .+-++|... +|.+-|-||..+
T Consensus 371 vS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L-~dpVrvVqg-~vgean~dITQ~V~V~ 448 (731)
T KOG0339|consen 371 VSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDIL-SDPVRVVQG-EVGEANEDITQTVSVC 448 (731)
T ss_pred eeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHh-cCCeeEEEe-ehhccccchhheeeec
Confidence 345566655553 22233333333 35899999986644 77778888 999998877 999999999877
Q ss_pred CChhhHHhhhcc-cccCCCcceEEEEeeCCc
Q 048509 73 AYIKTYIHRAGP-RARAGQNGHCFTLLPKDE 102 (168)
Q Consensus 73 ~~~~~yihr~GR-~gR~g~~g~~~~~~~~~~ 102 (168)
.+-+.=+|-.-| ---.-..|.++.|+++..
T Consensus 449 ~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~ 479 (731)
T KOG0339|consen 449 PSEEKKLNWLLRHLVEFSSEGKVLIFVTKKA 479 (731)
T ss_pred cCcHHHHHHHHHHhhhhccCCcEEEEEeccC
Confidence 222222222211 112346789999998766
No 162
>PRK14701 reverse gyrase; Provisional
Probab=46.27 E-value=21 Score=36.40 Aligned_cols=30 Identities=27% Similarity=0.543 Sum_probs=23.6
Q ss_pred CChhhHHhhhcccccC--C--CcceEEEEeeCCc
Q 048509 73 AYIKTYIHRAGPRARA--G--QNGHCFTLLPKDE 102 (168)
Q Consensus 73 ~~~~~yihr~GR~gR~--g--~~g~~~~~~~~~~ 102 (168)
+|+.+|||-.|||.|. | ..|.+++|++...
T Consensus 494 pd~~tyiqasgrtsrl~~gg~tkgls~~~~d~~~ 527 (1638)
T PRK14701 494 PDVRTYIQASGRTSRLFAGGITKGASVLIVDDPE 527 (1638)
T ss_pred cCcccceeccchhhhccCCCcCCceEEEEecCHH
Confidence 7888999999999993 4 5777777776544
No 163
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=44.39 E-value=43 Score=29.21 Aligned_cols=29 Identities=14% Similarity=-0.041 Sum_probs=23.0
Q ss_pred HHHHHHHHhccCCCcEEEEcCCcchHHHH
Q 048509 16 PIYLIPLLRNLGGEKFIVFASSVANSPKT 44 (168)
Q Consensus 16 ~~~L~~ll~~~~~~~~iIF~~t~~~~~~~ 44 (168)
+.+|-+||++.....++|-++|++-|.++
T Consensus 117 LPIl~~LL~~p~~~~~lVLtPtRELA~QI 145 (476)
T KOG0330|consen 117 LPILQRLLQEPKLFFALVLTPTRELAQQI 145 (476)
T ss_pred HHHHHHHHcCCCCceEEEecCcHHHHHHH
Confidence 46777888877778899999999999333
No 164
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=42.89 E-value=51 Score=29.31 Aligned_cols=40 Identities=18% Similarity=0.478 Sum_probs=28.5
Q ss_pred EEEEcCCcchH----------------------------HHHHHHHHhCCCccEEEEcc-----ccccC-CCcCCC
Q 048509 31 FIVFASSVANS----------------------------PKTLKAFRGKGHMQVLVCSD-----AMTSG-MDVERA 72 (168)
Q Consensus 31 ~iIF~~t~~~~----------------------------~~~~~~F~~~~~~~iLvaTd-----v~~rG-lDi~~v 72 (168)
++|.++|++-| ...+..++ .| .+|||||+ .+.++ +|+..+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~-~~-~~ivVaTPGRllD~i~~~~l~l~~v 175 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK-RG-VDIVVATPGRLLDLIKRGKLDLSGV 175 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh-cC-CCEEEECccHHHHHHHcCCcchhhc
Confidence 89999999988 33336666 55 88999987 44555 566666
No 165
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=42.88 E-value=15 Score=34.45 Aligned_cols=90 Identities=16% Similarity=0.248 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHhccC--CCcEEEEcCCcchH--------------------------HHHHHHHHhCCC-ccEEEEccc
Q 048509 12 SKLKPIYLIPLLRNLG--GEKFIVFASSVANS--------------------------PKTLKAFRGKGH-MQVLVCSDA 62 (168)
Q Consensus 12 ~~~K~~~L~~ll~~~~--~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~-~~iLvaTdv 62 (168)
+..|+..|-.||.... +.++++|+.-.... ...+.+|. ..+ .-.|++|-.
T Consensus 1026 dSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ-~sdiFvFLLSTRA 1104 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQ-ASDIFVFLLSTRA 1104 (1185)
T ss_pred cccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhcc-CCceEEEEEeccc
Confidence 4567778888887654 45889988644333 77888898 544 455799999
Q ss_pred cccCCCcCCCCChh---------hHHhhhcccccCCC--cceEEEEeeCCc
Q 048509 63 MTSGMDVERAAYIK---------TYIHRAGPRARAGQ--NGHCFTLLPKDE 102 (168)
Q Consensus 63 ~~rGlDi~~v~~~~---------~yihr~GR~gR~g~--~g~~~~~~~~~~ 102 (168)
.+-||++...+++. .=.|-+.|+-|.|+ .-+++-+++.+.
T Consensus 1105 GGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgT 1155 (1185)
T KOG0388|consen 1105 GGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGT 1155 (1185)
T ss_pred CcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccccc
Confidence 99999988773332 22455555555553 345666666554
No 166
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=40.84 E-value=53 Score=32.09 Aligned_cols=21 Identities=14% Similarity=0.477 Sum_probs=17.7
Q ss_pred HHHHHHHHhCCCccEEEEcccc
Q 048509 42 PKTLKAFRGKGHMQVLVCSDAM 63 (168)
Q Consensus 42 ~~~~~~F~~~~~~~iLvaTdv~ 63 (168)
++++++|. +|..+|||+|..+
T Consensus 171 ee~le~i~-~gdfdIlitTs~F 191 (1187)
T COG1110 171 EEALERIE-SGDFDILITTSQF 191 (1187)
T ss_pred HHHHHHHh-cCCccEEEEeHHH
Confidence 77888899 9999999998753
No 167
>PHA03065 Hypothetical protein; Provisional
Probab=38.67 E-value=83 Score=27.51 Aligned_cols=43 Identities=26% Similarity=0.388 Sum_probs=31.5
Q ss_pred HHHHHHhccCCCcEEEEcCCcchH----HHHHH-HHHhCCCccEEEEcc
Q 048509 18 YLIPLLRNLGGEKFIVFASSVANS----PKTLK-AFRGKGHMQVLVCSD 61 (168)
Q Consensus 18 ~L~~ll~~~~~~~~iIF~~t~~~~----~~~~~-~F~~~~~~~iLvaTd 61 (168)
.|...|.....+-.|+||.-.+.- .++-+ .++ .|.|++||+||
T Consensus 149 ~l~~~L~~~~~~v~I~yCdgvDAEfvMC~~ak~~a~~-~g~WPl~iStD 196 (438)
T PHA03065 149 LLESALARLGENVEIVYCDGVDAEFVMCARAKELAAT-TGEWPLLISTD 196 (438)
T ss_pred HHHHHHHhccCCceEEEECCcchhHHHHHHHHHHHhh-cCCCceEEecc
Confidence 344446666677899999987754 44444 456 99999999999
No 168
>PF04599 Pox_G5: Poxvirus G5 protein; InterPro: IPR007678 Protein G5 is found in a number of Poxviruses.
Probab=38.44 E-value=94 Score=27.20 Aligned_cols=46 Identities=22% Similarity=0.287 Sum_probs=34.3
Q ss_pred HHHHHHHHhccCCCcEEEEcCCcchH----HHHHHHHHhCCCccEEEEcc
Q 048509 16 PIYLIPLLRNLGGEKFIVFASSVANS----PKTLKAFRGKGHMQVLVCSD 61 (168)
Q Consensus 16 ~~~L~~ll~~~~~~~~iIF~~t~~~~----~~~~~~F~~~~~~~iLvaTd 61 (168)
...+..+|...+.+-.||||.-.+.- .++.+.....|.|++||+||
T Consensus 145 k~~l~~~L~~~~~~V~IvyCDgvDAEFvMC~~Ak~~a~~~g~WPlliStD 194 (425)
T PF04599_consen 145 KTILESSLSRLKEDVEIVYCDGVDAEFVMCARAKKLAAKNGRWPLLISTD 194 (425)
T ss_pred HHHHHHHHHhccCCceEEEECCcChhHHHHHHHHHHHHhcCCCceEEeec
Confidence 34466777777778899999988754 55555443389999999999
No 169
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=38.09 E-value=90 Score=30.06 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=40.1
Q ss_pred HHHHHHHHhCCCccEEEEccccccCCCcCCC-----------------CChhhHHhhhcccccCCC
Q 048509 42 PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA-----------------AYIKTYIHRAGPRARAGQ 90 (168)
Q Consensus 42 ~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v-----------------~~~~~yihr~GR~gR~g~ 90 (168)
.+--++|. .|+-.|-|-+..++-||-+..- .+++.-||..|||-|.++
T Consensus 847 ~~EKqrFM-~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQ 911 (1300)
T KOG1513|consen 847 LREKQRFM-DGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQ 911 (1300)
T ss_pred hHHHhhhc-cccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccc
Confidence 34446899 9999999999999999987754 456888999999999874
No 170
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=33.09 E-value=67 Score=22.46 Aligned_cols=39 Identities=8% Similarity=0.011 Sum_probs=20.6
Q ss_pred ceEEEEEEcCCC----CHHHHHHHHHhccCCCcEEEEcCCcchH
Q 048509 2 SVNLSPQICESK----LKPIYLIPLLRNLGGEKFIVFASSVANS 41 (168)
Q Consensus 2 ~l~~~~~~~~~~----~K~~~L~~ll~~~~~~~~iIF~~t~~~~ 41 (168)
||+..++-+... +....+..+|... ++++++||.|=..+
T Consensus 57 Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~-~~Pvl~hC~sG~Ra 99 (110)
T PF04273_consen 57 GLQYVHIPVDGGAITEEDVEAFADALESL-PKPVLAHCRSGTRA 99 (110)
T ss_dssp T-EEEE----TTT--HHHHHHHHHHHHTT-TTSEEEE-SCSHHH
T ss_pred CCeEEEeecCCCCCCHHHHHHHHHHHHhC-CCCEEEECCCChhH
Confidence 455455544432 3445556666654 46999999987655
No 171
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=31.80 E-value=80 Score=31.11 Aligned_cols=45 Identities=11% Similarity=0.343 Sum_probs=35.8
Q ss_pred CCCcEEEEcCCcchH------------------------------HHHHHHHHhCCCccEEEEcc-ccccCCCcCCC
Q 048509 27 GGEKFIVFASSVANS------------------------------PKTLKAFRGKGHMQVLVCSD-AMTSGMDVERA 72 (168)
Q Consensus 27 ~~~~~iIF~~t~~~~------------------------------~~~~~~F~~~~~~~iLvaTd-v~~rGlDi~~v 72 (168)
.++++.|.|+|---| ..+++..+ +|+++|+|.|- +++.++-+.++
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la-~G~vDIvIGTHrLL~kdv~FkdL 717 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLA-EGKVDIVIGTHRLLSKDVKFKDL 717 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHh-cCCccEEEechHhhCCCcEEecC
Confidence 356889999987777 88899999 99999999997 45555655555
No 172
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=31.06 E-value=67 Score=31.50 Aligned_cols=89 Identities=22% Similarity=0.211 Sum_probs=62.8
Q ss_pred cCCCCHHHHHHHHHhcc--CCCcEEEEcCCcchH----------------------------------------------
Q 048509 10 CESKLKPIYLIPLLRNL--GGEKFIVFASSVANS---------------------------------------------- 41 (168)
Q Consensus 10 ~~~~~K~~~L~~ll~~~--~~~~~iIF~~t~~~~---------------------------------------------- 41 (168)
+....|+.+|+.+|+.- -+.+++||-.+..+.
T Consensus 1122 ~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~ 1201 (1567)
T KOG1015|consen 1122 LEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQ 1201 (1567)
T ss_pred hhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHH
Confidence 34567889999999743 368999999988776
Q ss_pred --HHHHHHHHhCCC----ccEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCC--cceEEEEee
Q 048509 42 --PKTLKAFRGKGH----MQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQ--NGHCFTLLP 99 (168)
Q Consensus 42 --~~~~~~F~~~~~----~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~--~g~~~~~~~ 99 (168)
+...+.|. .-. --.||+|-..+-||++-.. .++.-=+|-+=|+-|.|+ +-++|-|+.
T Consensus 1202 ~R~k~~~~FN-dp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiA 1275 (1567)
T KOG1015|consen 1202 SRKKWAEEFN-DPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIA 1275 (1567)
T ss_pred HHHHHHHHhc-CcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhh
Confidence 66677787 432 2357999999999997655 333333666667777775 555666665
No 173
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=29.44 E-value=26 Score=27.05 Aligned_cols=60 Identities=12% Similarity=0.139 Sum_probs=31.4
Q ss_pred ceEEEEEEcCCCCHHHHHHHHHhccC--------CC-----cEEEEcCCcchHHHHHHHHHhCCCccEEEEcccc
Q 048509 2 SVNLSPQICESKLKPIYLIPLLRNLG--------GE-----KFIVFASSVANSPKTLKAFRGKGHMQVLVCSDAM 63 (168)
Q Consensus 2 ~l~~~~~~~~~~~K~~~L~~ll~~~~--------~~-----~~iIF~~t~~~~~~~~~~F~~~~~~~iLvaTdv~ 63 (168)
++.-+|++.+-++.-.+..+++.... +. ..+-.+++.+.+.+-+++ + .|+-..+|+|+.-
T Consensus 41 gv~~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~-~-~G~~P~~v~TsAr 113 (185)
T PF09936_consen 41 GVKGYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEE-E-EGKRPLLVATSAR 113 (185)
T ss_dssp T-SEEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHH-H-HSS--EEEE--SS
T ss_pred CCcCEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHH-H-hCCCCEEEEecCc
Confidence 56778888888888888888886432 11 233334444444333333 3 5889999999985
No 174
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=28.13 E-value=57 Score=24.00 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=17.4
Q ss_pred HHHHHHHHhCCCccEEEEcccc
Q 048509 42 PKTLKAFRGKGHMQVLVCSDAM 63 (168)
Q Consensus 42 ~~~~~~F~~~~~~~iLvaTdv~ 63 (168)
.++++.-. +-...|+||||+.
T Consensus 66 ~evi~~I~-~~G~PviVAtDV~ 86 (138)
T PF04312_consen 66 SEVIEWIS-EYGKPVIVATDVS 86 (138)
T ss_pred HHHHHHHH-HcCCEEEEEecCC
Confidence 77888888 7778999999884
No 175
>PF05619 DUF787: Borrelia burgdorferi protein of unknown function (DUF787); InterPro: IPR008505 This entry consists of several hypothetical proteins of unknown function from Borrelia species. They may be proteinases as the majority contain a propeptide proteinase inhibitor domain which is associated with both serine and metallopeptidases.
Probab=27.53 E-value=1.6e+02 Score=24.68 Aligned_cols=70 Identities=14% Similarity=0.244 Sum_probs=42.0
Q ss_pred CHHHHHHHHHhccCCCcEEEEcCCcchH--------HHHHHHHHhCCCccEEEEccc---------------------cc
Q 048509 14 LKPIYLIPLLRNLGGEKFIVFASSVANS--------PKTLKAFRGKGHMQVLVCSDA---------------------MT 64 (168)
Q Consensus 14 ~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------~~~~~~F~~~~~~~iLvaTdv---------------------~~ 64 (168)
++..-+.++|+.+. .+.+||++|.... ..-...|+ ....=++++|-. -+
T Consensus 103 ~~~k~ik~~lk~~~-h~fvV~int~~dn~ddgltiy~~dy~~fk-~~~~FfVfsTke~~ike~fk~~~nsek~~iI~vys 180 (362)
T PF05619_consen 103 DKIKEIKDYLKSNR-HSFVVFINTQGDNSDDGLTIYKDDYNKFK-DPSNFFVFSTKESEIKEFFKNKSNSEKKRIIVVYS 180 (362)
T ss_pred CCHHHHHHHHHhCC-CcEEEEEecCCccccccchhhhhHHHHhc-CceeEEEEEcchhhHHHHhcCCCchhhcceEEEEe
Confidence 44677888888765 4789999987665 33344454 443344444431 12
Q ss_pred cCCCcCCCCChhhHHhhhccc
Q 048509 65 SGMDVERAAYIKTYIHRAGPR 85 (168)
Q Consensus 65 rGlDi~~v~~~~~yihr~GR~ 85 (168)
-|-|--++.-+..|+|.++--
T Consensus 181 ~~~dnLHLkFvs~YLhqasif 201 (362)
T PF05619_consen 181 NNEDNLHLKFVSKYLHQASIF 201 (362)
T ss_pred CCcceeehhHHHHHHhHhhhh
Confidence 334444445678898887653
No 176
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=26.59 E-value=59 Score=29.78 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=23.1
Q ss_pred cEEEEcCCcchH-------------------------HHHHHHHHhCCCccEEEEcc
Q 048509 30 KFIVFASSVANS-------------------------PKTLKAFRGKGHMQVLVCSD 61 (168)
Q Consensus 30 ~~iIF~~t~~~~-------------------------~~~~~~F~~~~~~~iLvaTd 61 (168)
=+||..+|+.-| +--.+.-+ -..++|||||+
T Consensus 143 GalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eR-i~~mNILVCTP 198 (758)
T KOG0343|consen 143 GALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELER-ISQMNILVCTP 198 (758)
T ss_pred eeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHh-hhcCCeEEech
Confidence 588999999988 33333444 56889999997
No 177
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=25.55 E-value=2.6e+02 Score=23.23 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=36.0
Q ss_pred CHHHHHHHHHhccCCCcEEEEcCCcchHHHHHHHHHhCCCccEEEEcc
Q 048509 14 LKPIYLIPLLRNLGGEKFIVFASSVANSPKTLKAFRGKGHMQVLVCSD 61 (168)
Q Consensus 14 ~K~~~L~~ll~~~~~~~~iIF~~t~~~~~~~~~~F~~~~~~~iLvaTd 61 (168)
.-++.+.+.+++..-+-++|||+....++.+++..- .+--.|.+-|+
T Consensus 52 PVf~tV~EA~~~~~a~~svI~Vp~~~aadai~EAid-a~i~liv~ITE 98 (293)
T COG0074 52 PVFNTVEEAVKETGANASVIFVPPPFAADAILEAID-AGIKLVVIITE 98 (293)
T ss_pred cHHHHHHHHHHhhCCCEEEEecCcHHHHHHHHHHHh-CCCcEEEEEeC
Confidence 345666777777777889999999888889999888 87556666665
No 178
>PRK13529 malate dehydrogenase; Provisional
Probab=25.19 E-value=72 Score=28.99 Aligned_cols=30 Identities=17% Similarity=0.408 Sum_probs=25.6
Q ss_pred EEEEcCCcchH------------------------HHHHHHHHhCCCccEEEEcc
Q 048509 31 FIVFASSVANS------------------------PKTLKAFRGKGHMQVLVCSD 61 (168)
Q Consensus 31 ~iIF~~t~~~~------------------------~~~~~~F~~~~~~~iLvaTd 61 (168)
-|||++|...| .+++..+. ...++++|.||
T Consensus 101 PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~nwp-~~~v~viVVTD 154 (563)
T PRK13529 101 PIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAP-NRDIKLIVVTD 154 (563)
T ss_pred CeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHhcCC-cccceEEEEeC
Confidence 48999998888 67777777 78999999999
No 179
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=22.24 E-value=1.9e+02 Score=22.61 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=20.8
Q ss_pred CCcEEEEcCCcchH-----------HHHHHHHHhCCCccEEEEcc
Q 048509 28 GEKFIVFASSVANS-----------PKTLKAFRGKGHMQVLVCSD 61 (168)
Q Consensus 28 ~~~~iIF~~t~~~~-----------~~~~~~F~~~~~~~iLvaTd 61 (168)
-.+++++++|-+.. ..+-+.|+ ....+||+--|
T Consensus 69 ~~~t~vv~~t~~~~~~~r~~~~~~a~t~AEyfr-d~G~dVlli~D 112 (215)
T PF00006_consen 69 LERTVVVAATSDEPPAARYRAPYTALTIAEYFR-DQGKDVLLIID 112 (215)
T ss_dssp GGGEEEEEEETTS-HHHHHHHHHHHHHHHHHHH-HTTSEEEEEEE
T ss_pred ccccccccccchhhHHHHhhhhccchhhhHHHh-hcCCceeehhh
Confidence 35777777776644 66677888 55556665444
No 180
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=22.21 E-value=3.3e+02 Score=26.46 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=36.0
Q ss_pred CCCccEEEEccccccCCCcCCCCCh--------hhHHhhhcccccC----CCcceEEEEee
Q 048509 51 KGHMQVLVCSDAMTSGMDVERAAYI--------KTYIHRAGPRARA----GQNGHCFTLLP 99 (168)
Q Consensus 51 ~~~~~iLvaTdv~~rGlDi~~v~~~--------~~yihr~GR~gR~----g~~g~~~~~~~ 99 (168)
....++||.+|++-=|.|.|.+.++ -..+|-+.||-|. ...|..+-|+.
T Consensus 591 ~d~~kilIV~dmlLTGFDaP~L~TmYvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 591 DDPLDLLIVVDMLLTGFDAPCLNTLYVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred CCCCCEEEEEccccccCCccccceEEeccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 6789999999999999999999221 3346666676663 24577777766
Done!