Query 048509
Match_columns 168
No_of_seqs 179 out of 1421
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 17:39:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048509.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048509hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hjv_A ATP-dependent RNA helic 99.9 1.3E-24 4.6E-29 161.9 12.9 113 2-123 9-156 (163)
2 1fuk_A Eukaryotic initiation f 99.9 1.2E-24 4E-29 162.3 12.1 113 2-123 3-151 (165)
3 2rb4_A ATP-dependent RNA helic 99.9 1.4E-24 4.7E-29 163.4 11.2 113 2-123 7-161 (175)
4 1t5i_A C_terminal domain of A 99.9 1.9E-24 6.4E-29 162.8 10.8 122 2-134 5-161 (172)
5 2jgn_A DBX, DDX3, ATP-dependen 99.9 5.8E-24 2E-28 162.0 12.4 123 2-136 19-177 (185)
6 2p6n_A ATP-dependent RNA helic 99.9 8.5E-24 2.9E-28 162.0 12.8 123 2-136 29-186 (191)
7 3eaq_A Heat resistant RNA depe 99.9 1E-23 3.5E-28 163.7 13.0 113 2-123 5-152 (212)
8 3i32_A Heat resistant RNA depe 99.9 1.7E-23 5.9E-28 170.9 13.1 114 1-123 1-149 (300)
9 2db3_A ATP-dependent RNA helic 99.9 1.6E-22 5.5E-27 171.5 14.5 123 2-136 275-432 (434)
10 2yjt_D ATP-dependent RNA helic 99.8 2.2E-24 7.6E-29 161.7 0.0 112 2-122 3-150 (170)
11 2i4i_A ATP-dependent RNA helic 99.8 2.4E-20 8.3E-25 155.2 12.9 123 2-136 249-407 (417)
12 1s2m_A Putative ATP-dependent 99.8 3.9E-20 1.3E-24 153.3 13.0 113 2-123 232-379 (400)
13 2j0s_A ATP-dependent RNA helic 99.8 2.8E-20 9.6E-25 154.9 11.9 113 2-123 249-397 (410)
14 3eiq_A Eukaryotic initiation f 99.8 5.2E-20 1.8E-24 152.8 10.6 121 3-135 254-410 (414)
15 1xti_A Probable ATP-dependent 99.8 5E-19 1.7E-23 145.9 12.7 122 2-134 224-380 (391)
16 3fht_A ATP-dependent RNA helic 99.8 3.2E-19 1.1E-23 147.8 11.0 113 3-123 240-394 (412)
17 3pey_A ATP-dependent RNA helic 99.8 5.2E-19 1.8E-23 145.4 12.2 133 3-145 217-391 (395)
18 1hv8_A Putative ATP-dependent 99.8 9E-19 3.1E-23 142.6 13.1 111 3-123 214-359 (367)
19 3i5x_A ATP-dependent RNA helic 99.8 4.6E-18 1.6E-22 147.5 13.2 112 3-123 308-463 (563)
20 1oyw_A RECQ helicase, ATP-depe 99.8 3.2E-18 1.1E-22 148.7 11.1 99 5-104 213-346 (523)
21 3sqw_A ATP-dependent RNA helic 99.8 5.3E-18 1.8E-22 148.3 12.6 112 3-123 257-412 (579)
22 3fmp_B ATP-dependent RNA helic 99.7 7.7E-20 2.6E-24 156.0 0.0 99 3-102 307-447 (479)
23 1fuu_A Yeast initiation factor 99.7 1.5E-19 5E-24 149.0 0.0 112 3-123 233-380 (394)
24 3oiy_A Reverse gyrase helicase 99.7 1.1E-17 3.8E-22 139.9 10.1 90 3-98 231-362 (414)
25 2z0m_A 337AA long hypothetical 99.7 2E-17 6.8E-22 133.4 11.2 96 3-102 197-323 (337)
26 3fho_A ATP-dependent RNA helic 99.7 1.3E-17 4.3E-22 144.1 5.8 112 4-123 332-485 (508)
27 2v1x_A ATP-dependent DNA helic 99.7 3.7E-17 1.3E-21 144.1 8.6 88 15-103 253-376 (591)
28 1tf5_A Preprotein translocase 99.7 2.6E-17 8.8E-22 148.9 6.8 115 7-123 409-566 (844)
29 3jux_A Protein translocase sub 99.7 2.2E-16 7.6E-21 141.1 12.0 115 7-123 451-608 (822)
30 1gku_B Reverse gyrase, TOP-RG; 99.7 1.7E-16 5.8E-21 147.7 9.5 96 3-103 254-456 (1054)
31 2fsf_A Preprotein translocase 99.6 2.2E-16 7.6E-21 142.8 6.3 95 7-104 418-586 (853)
32 2whx_A Serine protease/ntpase/ 99.6 2.2E-16 7.7E-21 139.8 6.2 84 19-105 347-485 (618)
33 1yks_A Genome polyprotein [con 99.6 2.7E-16 9.1E-21 133.9 6.3 76 28-105 177-306 (440)
34 4ddu_A Reverse gyrase; topoiso 99.6 9.6E-16 3.3E-20 143.2 10.3 65 2-72 287-378 (1104)
35 4a2p_A RIG-I, retinoic acid in 99.6 4.8E-16 1.7E-20 133.4 7.0 89 12-103 370-510 (556)
36 3tbk_A RIG-I helicase domain; 99.6 4.4E-16 1.5E-20 133.3 5.7 90 12-104 369-510 (555)
37 1nkt_A Preprotein translocase 99.6 2.4E-15 8.1E-20 136.6 10.3 113 7-123 437-638 (922)
38 2d7d_A Uvrabc system protein B 99.6 5E-15 1.7E-19 132.0 11.0 92 12-105 427-560 (661)
39 1c4o_A DNA nucleotide excision 99.6 8.1E-15 2.8E-19 130.7 11.9 93 11-105 420-554 (664)
40 2z83_A Helicase/nucleoside tri 99.6 8.4E-16 2.9E-20 131.4 5.1 80 20-101 183-313 (459)
41 1wp9_A ATP-dependent RNA helic 99.6 4E-15 1.4E-19 124.0 8.6 90 11-102 340-476 (494)
42 2jlq_A Serine protease subunit 99.6 2.8E-15 9.5E-20 127.9 6.2 79 20-100 181-310 (451)
43 4a2q_A RIG-I, retinoic acid in 99.5 5.7E-15 1.9E-19 133.6 7.6 89 12-103 611-751 (797)
44 2ykg_A Probable ATP-dependent 99.5 2.3E-15 7.8E-20 133.4 4.9 89 12-103 378-518 (696)
45 3dmq_A RNA polymerase-associat 99.5 2.2E-14 7.5E-19 132.6 10.9 89 10-99 485-611 (968)
46 4a4z_A Antiviral helicase SKI2 99.5 5E-14 1.7E-18 130.6 12.8 92 6-98 314-489 (997)
47 3l9o_A ATP-dependent RNA helic 99.5 5.4E-14 1.8E-18 131.5 12.3 60 42-102 520-598 (1108)
48 2wv9_A Flavivirin protease NS2 99.5 8.9E-15 3.1E-19 130.7 6.2 77 27-105 409-540 (673)
49 2fwr_A DNA repair protein RAD2 99.5 1.2E-14 4E-19 123.5 4.5 92 10-102 331-455 (472)
50 2v6i_A RNA helicase; membrane, 99.5 2.5E-14 8.5E-19 121.4 6.3 81 17-99 161-289 (431)
51 4a2w_A RIG-I, retinoic acid in 99.5 6.7E-14 2.3E-18 128.9 8.6 89 12-103 611-751 (936)
52 4gl2_A Interferon-induced heli 99.5 3.3E-13 1.1E-17 119.5 11.5 86 14-103 381-520 (699)
53 2eyq_A TRCF, transcription-rep 99.5 1.7E-13 5.9E-18 128.5 9.8 87 15-102 798-923 (1151)
54 2xgj_A ATP-dependent RNA helic 99.4 4.9E-13 1.7E-17 124.1 12.5 58 43-101 423-499 (1010)
55 3o8b_A HCV NS3 protease/helica 99.4 7.8E-15 2.7E-19 130.7 0.2 76 26-105 394-518 (666)
56 1gm5_A RECG; helicase, replica 99.4 3.6E-13 1.2E-17 122.0 6.5 60 42-102 629-698 (780)
57 1z5z_A Helicase of the SNF2/RA 99.4 4.6E-13 1.6E-17 107.5 6.3 92 10-102 92-225 (271)
58 2p6r_A Afuhel308 helicase; pro 99.4 2.2E-12 7.4E-17 115.1 9.6 59 43-102 313-389 (702)
59 2xau_A PRE-mRNA-splicing facto 99.3 8.5E-13 2.9E-17 119.5 6.2 99 3-102 274-444 (773)
60 2zj8_A DNA helicase, putative 99.3 3.3E-12 1.1E-16 114.3 9.4 59 43-102 311-388 (720)
61 2va8_A SSO2462, SKI2-type heli 99.3 1.2E-11 3.9E-16 110.5 12.2 60 42-102 328-409 (715)
62 3h1t_A Type I site-specific re 99.3 4.6E-12 1.6E-16 110.7 8.1 82 19-101 429-558 (590)
63 4f92_B U5 small nuclear ribonu 99.3 7E-12 2.4E-16 121.4 9.8 60 42-102 1229-1309(1724)
64 2oca_A DAR protein, ATP-depend 99.3 1.4E-12 4.8E-17 111.7 3.9 83 15-99 332-453 (510)
65 3rc3_A ATP-dependent RNA helic 99.3 1.5E-11 5E-16 110.0 9.4 80 30-120 322-455 (677)
66 4f92_B U5 small nuclear ribonu 99.2 1E-11 3.5E-16 120.3 7.6 60 42-102 394-474 (1724)
67 1z63_A Helicase of the SNF2/RA 99.1 5.7E-11 2E-15 101.4 6.9 91 11-102 322-454 (500)
68 1z3i_X Similar to RAD54-like; 98.9 3.6E-09 1.2E-13 93.8 9.0 89 13-102 398-529 (644)
69 3mwy_W Chromo domain-containin 98.8 1.1E-08 3.7E-13 92.8 7.1 90 12-102 554-685 (800)
70 2w00_A HSDR, R.ECOR124I; ATP-b 98.6 4.5E-08 1.5E-12 91.2 6.9 58 42-100 639-708 (1038)
71 2vl7_A XPD; helicase, unknown 97.1 0.00076 2.6E-08 58.4 6.4 43 27-71 383-448 (540)
72 2ipc_A Preprotein translocase 96.2 0.012 4E-07 54.3 7.8 44 79-123 676-719 (997)
73 4a15_A XPD helicase, ATP-depen 84.8 1.8 6.3E-05 37.9 6.5 43 28-72 448-515 (620)
74 3crv_A XPD/RAD3 related DNA he 77.5 2.8 9.7E-05 35.9 5.0 43 27-70 392-456 (551)
75 3hgt_A HDA1 complex subunit 3; 54.1 51 0.0017 26.6 7.6 90 12-102 107-238 (328)
76 2y9m_B Peroxisome assembly pro 38.1 28 0.00094 24.3 3.1 46 30-78 63-111 (130)
77 3bor_A Human initiation factor 28.1 36 0.0012 25.0 2.7 22 28-49 98-119 (237)
78 3fmo_B ATP-dependent RNA helic 25.4 75 0.0026 24.5 4.1 38 12-49 141-183 (300)
79 2aif_A Ribosomal protein L7A; 22.5 1.9E+02 0.0065 19.7 6.0 70 42-121 47-130 (135)
80 3eiq_A Eukaryotic initiation f 21.8 84 0.0029 24.6 3.9 15 27-41 107-121 (414)
No 1
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.92 E-value=1.3e-24 Score=161.86 Aligned_cols=113 Identities=19% Similarity=0.352 Sum_probs=103.7
Q ss_pred ceEEEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCcc
Q 048509 2 SVNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQ 55 (168)
Q Consensus 2 ~l~~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~ 55 (168)
+|+|+|+.++.++|...|..+|......++||||+++..+ ..++++|+ +|+.+
T Consensus 9 ~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~-~g~~~ 87 (163)
T 2hjv_A 9 NIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFK-RGEYR 87 (163)
T ss_dssp CEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH-TTSCS
T ss_pred cceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH-cCCCe
Confidence 5899999999999999999999988888999999999988 78899999 99999
Q ss_pred EEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCC
Q 048509 56 VLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123 (168)
Q Consensus 56 iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (168)
||||||++++|+|+|++ .++.+|+||+||+||.|+.|.+++|+++.+ ...+..+.+.++.
T Consensus 88 vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~--------~~~~~~i~~~~~~ 156 (163)
T 2hjv_A 88 YLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFE--------KRFLADIEEYIGF 156 (163)
T ss_dssp EEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGG--------HHHHHHHHHHHTS
T ss_pred EEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHH--------HHHHHHHHHHHCC
Confidence 99999999999999998 568999999999999999999999999988 6667777776654
No 2
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.92 E-value=1.2e-24 Score=162.32 Aligned_cols=113 Identities=22% Similarity=0.397 Sum_probs=97.6
Q ss_pred ceEEEEEEcCCCC-HHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCc
Q 048509 2 SVNLSPQICESKL-KPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHM 54 (168)
Q Consensus 2 ~l~~~~~~~~~~~-K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~ 54 (168)
+|+|+|+.++.++ |...|..++......++||||+++..+ ..+++.|+ +|+.
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~g~~ 81 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFR-SGSS 81 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH-TTSC
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHH-cCCC
Confidence 5789999999887 999999999988888999999999988 78899999 9999
Q ss_pred cEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCC
Q 048509 55 QVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123 (168)
Q Consensus 55 ~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (168)
+|||||+++++|+|+|++ .++.+|+||+||+||.|+.|.+++|+++.+ ...+..+.+.+..
T Consensus 82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~--------~~~~~~~~~~~~~ 151 (165)
T 1fuk_A 82 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNED--------VGAMRELEKFYST 151 (165)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTT--------HHHHHHHHHHSSC
T ss_pred EEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchH--------HHHHHHHHHHHcc
Confidence 999999999999999998 568999999999999999999999999998 6667777776654
No 3
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=1.4e-24 Score=163.40 Aligned_cols=113 Identities=24% Similarity=0.460 Sum_probs=98.2
Q ss_pred ceEEEEEEcCCCC-HHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCc
Q 048509 2 SVNLSPQICESKL-KPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHM 54 (168)
Q Consensus 2 ~l~~~~~~~~~~~-K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~ 54 (168)
+|.|+|+.++..+ |...|..++......++||||+++..| ..+++.|+ +|+.
T Consensus 7 ~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~-~g~~ 85 (175)
T 2rb4_A 7 NIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFR-DGKE 85 (175)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHH-TTSC
T ss_pred CceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH-cCCC
Confidence 5899999999766 999999999988888999999999998 78899999 9999
Q ss_pred cEEEEccccccCCCcCCC---------------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHH
Q 048509 55 QVLVCSDAMTSGMDVERA---------------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQ 119 (168)
Q Consensus 55 ~iLvaTdv~~rGlDi~~v---------------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~ 119 (168)
+|||||+++++|+|+|++ .++.+|+||+||+||.|+.|.+++|+++.+ ...+..+.+
T Consensus 86 ~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~--------~~~~~~i~~ 157 (175)
T 2rb4_A 86 KVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDE--------LPSLMKIQD 157 (175)
T ss_dssp SEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGG--------HHHHHHHHH
T ss_pred eEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccch--------HHHHHHHHH
Confidence 999999999999999988 236899999999999999999999999988 667777777
Q ss_pred HhCC
Q 048509 120 QADH 123 (168)
Q Consensus 120 ~~~~ 123 (168)
.++.
T Consensus 158 ~~~~ 161 (175)
T 2rb4_A 158 HFNS 161 (175)
T ss_dssp HHTC
T ss_pred HhcC
Confidence 7764
No 4
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.91 E-value=1.9e-24 Score=162.75 Aligned_cols=122 Identities=22% Similarity=0.365 Sum_probs=104.4
Q ss_pred ceEEEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCcc
Q 048509 2 SVNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQ 55 (168)
Q Consensus 2 ~l~~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~ 55 (168)
+|+|+|+.++..+|...|.++++.....++||||+++..+ ..+++.|+ +|+.+
T Consensus 5 ~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~-~g~~~ 83 (172)
T 1t5i_A 5 GLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFK-DFQRR 83 (172)
T ss_dssp CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH-TTSCS
T ss_pred CeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHH-CCCCc
Confidence 5889999999999999999999988888999999999988 78999999 99999
Q ss_pred EEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCCCCC
Q 048509 56 VLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSC 126 (168)
Q Consensus 56 iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 126 (168)
||||||++++|+|+|++ .++.+|+||+||+||.|+.|.+++|+++.++ ...+..+.+....
T Consensus 84 vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~-------~~~~~~l~~~~~~--- 153 (172)
T 1t5i_A 84 ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND-------AKILNDVQDRFEV--- 153 (172)
T ss_dssp EEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHH-------HHHHHHHHHHHCC---
T ss_pred EEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhH-------HHHHHHHHHHHhc---
Confidence 99999999999999988 6689999999999999999999999987652 3455666666643
Q ss_pred CCcCCChh
Q 048509 127 PVHSIPSS 134 (168)
Q Consensus 127 ~~~~~~~~ 134 (168)
+..++|..
T Consensus 154 ~~~~~~~~ 161 (172)
T 1t5i_A 154 NISELPDE 161 (172)
T ss_dssp CEEECC--
T ss_pred chhhCChh
Confidence 33444443
No 5
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.91 E-value=5.8e-24 Score=161.99 Aligned_cols=123 Identities=24% Similarity=0.401 Sum_probs=99.8
Q ss_pred ceEEEEEEcCCCCHHHHHHHHHhcc-CCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCc
Q 048509 2 SVNLSPQICESKLKPIYLIPLLRNL-GGEKFIVFASSVANS--------------------------PKTLKAFRGKGHM 54 (168)
Q Consensus 2 ~l~~~~~~~~~~~K~~~L~~ll~~~-~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~ 54 (168)
+|+|.|+.++..+|...|.++|... ...++||||+++..| ..++++|+ +|+.
T Consensus 19 ~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~-~g~~ 97 (185)
T 2jgn_A 19 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR-SGKS 97 (185)
T ss_dssp TEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHH-HTSS
T ss_pred CceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHH-cCCC
Confidence 5899999999999999999999987 467999999999998 67899999 9999
Q ss_pred cEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCCCC
Q 048509 55 QVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDS 125 (168)
Q Consensus 55 ~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 125 (168)
+||||||++++|+|+|++ .++.+|+||+||+||.|+.|.+++|+++.+... ...+.+++....
T Consensus 98 ~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~-----~~~l~~~l~~~~--- 169 (185)
T 2jgn_A 98 PILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINI-----TKDLLDLLVEAK--- 169 (185)
T ss_dssp SEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGG-----HHHHHHHHHHTT---
T ss_pred eEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHH-----HHHHHHHHHhcc---
Confidence 999999999999999998 568999999999999999999999999888555 445555555443
Q ss_pred CCCcCCChhhH
Q 048509 126 CPVHSIPSSSI 136 (168)
Q Consensus 126 ~~~~~~~~~~~ 136 (168)
.++|+.+.
T Consensus 170 ---~~~~~~l~ 177 (185)
T 2jgn_A 170 ---QEVPSWLE 177 (185)
T ss_dssp ---CCCCHHHH
T ss_pred ---CCCCHHHH
Confidence 36676544
No 6
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.91 E-value=8.5e-24 Score=161.99 Aligned_cols=123 Identities=28% Similarity=0.467 Sum_probs=101.4
Q ss_pred ceEEEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCcc
Q 048509 2 SVNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQ 55 (168)
Q Consensus 2 ~l~~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~ 55 (168)
+|.|.|+.++..+|...|.++|.... .++||||+++..+ .++++.|+ +|+.+
T Consensus 29 ~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~-~g~~~ 106 (191)
T 2p6n_A 29 DVIQEVEYVKEEAKMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFR-EGKKD 106 (191)
T ss_dssp CSEEEEEECCGGGHHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHH-HTSCS
T ss_pred CceEEEEEcChHHHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHh-cCCCE
Confidence 57899999999999999999998754 5899999999998 78899999 99999
Q ss_pred EEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCCCCC
Q 048509 56 VLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSC 126 (168)
Q Consensus 56 iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 126 (168)
||||||++++|+|+|++ .++.+|+||+||+||+|+.|.+++|+++.++..+ ...+.++++....
T Consensus 107 vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~----~~~l~~~l~~~~~--- 179 (191)
T 2p6n_A 107 VLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESV----LMDLKALLLEAKQ--- 179 (191)
T ss_dssp EEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHH----HHHHHHHHHHTTC---
T ss_pred EEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHH----HHHHHHHHHHccC---
Confidence 99999999999999998 5689999999999999999999999998733222 4566666665554
Q ss_pred CCcCCChhhH
Q 048509 127 PVHSIPSSSI 136 (168)
Q Consensus 127 ~~~~~~~~~~ 136 (168)
++|+.+.
T Consensus 180 ---~~p~~l~ 186 (191)
T 2p6n_A 180 ---KVPPVLQ 186 (191)
T ss_dssp ---CCCHHHH
T ss_pred ---cCCHHHH
Confidence 5666543
No 7
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.91 E-value=1e-23 Score=163.67 Aligned_cols=113 Identities=25% Similarity=0.394 Sum_probs=101.1
Q ss_pred ceEEEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCcc
Q 048509 2 SVNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQ 55 (168)
Q Consensus 2 ~l~~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~ 55 (168)
.+.+.++.++..+|+..|.+++....+.++||||+|+..+ ..+++.|+ +|+.+
T Consensus 5 ~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~-~g~~~ 83 (212)
T 3eaq_A 5 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFR-QGEVR 83 (212)
T ss_dssp CBCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHH-SSSCC
T ss_pred ceeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHH-CCCCe
Confidence 4677889999999999999999988889999999999988 88999999 99999
Q ss_pred EEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCC
Q 048509 56 VLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123 (168)
Q Consensus 56 iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (168)
||||||++++|+|+|++ .+..+|+||+||+||.|+.|.+++|+++.+ ...+..+.+..+.
T Consensus 84 vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~--------~~~~~~i~~~~~~ 152 (212)
T 3eaq_A 84 VLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRE--------RRDVEALERAVGR 152 (212)
T ss_dssp EEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGG--------HHHHHHHHHHHSS
T ss_pred EEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhH--------HHHHHHHHHHhcC
Confidence 99999999999999998 668999999999999999999999999998 5666777776654
No 8
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.90 E-value=1.7e-23 Score=170.90 Aligned_cols=114 Identities=24% Similarity=0.392 Sum_probs=99.3
Q ss_pred CceEEEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCc
Q 048509 1 MSVNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHM 54 (168)
Q Consensus 1 ~~l~~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~ 54 (168)
+++.|+++.++..+|+..|.+++....+.++||||+|+..+ ..+++.|+ +|+.
T Consensus 1 v~v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~-~g~~ 79 (300)
T 3i32_A 1 VTYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFR-QGEV 79 (300)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHH-HTSC
T ss_pred CceEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhh-cCCc
Confidence 47899999999999999999999988889999999999988 88999999 9999
Q ss_pred cEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCC
Q 048509 55 QVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123 (168)
Q Consensus 55 ~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (168)
+||||||++++|+|+|+| .+..+|+||+||+||+|+.|.|++|+++.+ ...+..+.+..+.
T Consensus 80 ~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e--------~~~~~~ie~~~~~ 149 (300)
T 3i32_A 80 RVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRE--------RRDVEALERAVGR 149 (300)
T ss_dssp CEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSST--------HHHHHHHHHHHTC
T ss_pred eEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHH--------HHHHHHHHHHhCC
Confidence 999999999999999999 568999999999999999999999999998 5566666666654
No 9
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.89 E-value=1.6e-22 Score=171.49 Aligned_cols=123 Identities=24% Similarity=0.459 Sum_probs=106.5
Q ss_pred ceEEEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCcc
Q 048509 2 SVNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQ 55 (168)
Q Consensus 2 ~l~~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~ 55 (168)
.+.+.+..+...+|...|..++..... ++||||+|+..| .+++++|+ +|+.+
T Consensus 275 ~i~~~~~~~~~~~k~~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~-~g~~~ 352 (434)
T 2db3_A 275 DVKQTIYEVNKYAKRSKLIEILSEQAD-GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFK-NGSMK 352 (434)
T ss_dssp TEEEEEEECCGGGHHHHHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHH-TSSCS
T ss_pred ccceEEEEeCcHHHHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHH-cCCCc
Confidence 467888899999999999999988765 499999999999 88999999 99999
Q ss_pred EEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCCCCC
Q 048509 56 VLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSC 126 (168)
Q Consensus 56 iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 126 (168)
||||||+++||+|+|+| .++++|+||+|||||+|+.|.+++|+++.++..+ ...+.++++...+
T Consensus 353 vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~----~~~l~~~l~~~~~--- 425 (434)
T 2db3_A 353 VLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAI----AADLVKILEGSGQ--- 425 (434)
T ss_dssp EEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGG----HHHHHHHHHHTTC---
T ss_pred EEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHH----HHHHHHHHHHcCC---
Confidence 99999999999999999 5689999999999999999999999996654433 5777777777665
Q ss_pred CCcCCChhhH
Q 048509 127 PVHSIPSSSI 136 (168)
Q Consensus 127 ~~~~~~~~~~ 136 (168)
++|+.+.
T Consensus 426 ---~vp~~l~ 432 (434)
T 2db3_A 426 ---TVPDFLR 432 (434)
T ss_dssp ---CCCGGGC
T ss_pred ---CCCHHHH
Confidence 6776653
No 10
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.80 E-value=2.2e-24 Score=161.68 Aligned_cols=112 Identities=24% Similarity=0.391 Sum_probs=99.2
Q ss_pred ceEEEEEEcCC-CCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCc
Q 048509 2 SVNLSPQICES-KLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHM 54 (168)
Q Consensus 2 ~l~~~~~~~~~-~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~ 54 (168)
+|.|+|+.++. .+|...|..+++.....++||||+++..| ..+++.|+ +|+.
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~-~g~~ 81 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLT-EGRV 81 (170)
Confidence 47889999998 99999999999987778999999999988 67899999 9999
Q ss_pred cEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhC
Q 048509 55 QVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQAD 122 (168)
Q Consensus 55 ~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (168)
+|||||+++++|+|+|++ .++.+|+||+||+||.|+.|.+++|+++.+ ...+..+.+.++
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~--------~~~~~~~~~~~~ 150 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD--------HLLLGKVGRYIE 150 (170)
Confidence 999999999999999988 557899999999999999999999999888 445555555444
No 11
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.83 E-value=2.4e-20 Score=155.19 Aligned_cols=123 Identities=24% Similarity=0.422 Sum_probs=102.3
Q ss_pred ceEEEEEEcCCCCHHHHHHHHHhccC-CCcEEEEcCCcchH--------------------------HHHHHHHHhCCCc
Q 048509 2 SVNLSPQICESKLKPIYLIPLLRNLG-GEKFIVFASSVANS--------------------------PKTLKAFRGKGHM 54 (168)
Q Consensus 2 ~l~~~~~~~~~~~K~~~L~~ll~~~~-~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~ 54 (168)
.+.+.++.++..+|...|..+++... ..++||||+++..+ ..+++.|+ +|+.
T Consensus 249 ~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~-~g~~ 327 (417)
T 2i4i_A 249 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR-SGKS 327 (417)
T ss_dssp SEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH-HTSS
T ss_pred CceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHH-cCCC
Confidence 36788888999999999999999874 67899999999998 78899999 9999
Q ss_pred cEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCCCC
Q 048509 55 QVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDS 125 (168)
Q Consensus 55 ~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 125 (168)
+|||||+++++|+|+|++ .++.+|+||+||+||.|+.|.+++|+++.+... ...+.+.+.....
T Consensus 328 ~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~-----~~~l~~~~~~~~~-- 400 (417)
T 2i4i_A 328 PILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINI-----TKDLLDLLVEAKQ-- 400 (417)
T ss_dssp CEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGG-----HHHHHHHHHHTTC--
T ss_pred CEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHH-----HHHHHHHHHHhcC--
Confidence 999999999999999998 567999999999999999999999999988555 4555555554443
Q ss_pred CCCcCCChhhH
Q 048509 126 CPVHSIPSSSI 136 (168)
Q Consensus 126 ~~~~~~~~~~~ 136 (168)
++|..+.
T Consensus 401 ----~~~~~l~ 407 (417)
T 2i4i_A 401 ----EVPSWLE 407 (417)
T ss_dssp ----CCCHHHH
T ss_pred ----cCCHHHH
Confidence 5665543
No 12
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.83 E-value=3.9e-20 Score=153.34 Aligned_cols=113 Identities=27% Similarity=0.444 Sum_probs=102.8
Q ss_pred ceEEEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCcc
Q 048509 2 SVNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQ 55 (168)
Q Consensus 2 ~l~~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~ 55 (168)
++.+++..++...|...|..++......++||||+++..+ ..+++.|+ +|+.+
T Consensus 232 ~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~g~~~ 310 (400)
T 1s2m_A 232 GITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFR-QGKVR 310 (400)
T ss_dssp TEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHH-TTSSS
T ss_pred CceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHh-cCCCc
Confidence 3677888888899999999999988888999999999988 78899999 99999
Q ss_pred EEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCC
Q 048509 56 VLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123 (168)
Q Consensus 56 iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (168)
|||||+++++|+|+|++ .++.+|+||+||+||.|+.|.+++|+++.| ...+.++.+.++.
T Consensus 311 vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~--------~~~~~~i~~~~~~ 379 (400)
T 1s2m_A 311 TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWND--------RFNLYKIEQELGT 379 (400)
T ss_dssp EEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGG--------HHHHHHHHHHHTC
T ss_pred EEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccch--------HHHHHHHHHHhCC
Confidence 99999999999999998 567899999999999999999999999999 6778888887765
No 13
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.83 E-value=2.8e-20 Score=154.85 Aligned_cols=113 Identities=23% Similarity=0.370 Sum_probs=100.9
Q ss_pred ceEEEEEEcCCCC-HHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCc
Q 048509 2 SVNLSPQICESKL-KPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHM 54 (168)
Q Consensus 2 ~l~~~~~~~~~~~-K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~ 54 (168)
++.+.+..++..+ |...|..++......++||||+++..+ ..+++.|+ +|+.
T Consensus 249 ~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~-~g~~ 327 (410)
T 2j0s_A 249 GIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR-SGAS 327 (410)
T ss_dssp TEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHH-HTSS
T ss_pred CceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHH-CCCC
Confidence 3567777777655 999999999988888999999999988 78999999 9999
Q ss_pred cEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCC
Q 048509 55 QVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123 (168)
Q Consensus 55 ~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (168)
+|||||+++++|+|+|++ .+..+|+||+||+||.|+.|.+++|+++.+ ...+..+.+..+.
T Consensus 328 ~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~--------~~~~~~i~~~~~~ 397 (410)
T 2j0s_A 328 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDD--------IRILRDIEQYYST 397 (410)
T ss_dssp CEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGG--------HHHHHHHHHHTTC
T ss_pred CEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHH--------HHHHHHHHHHhCC
Confidence 999999999999999998 667999999999999999999999999999 6777787777764
No 14
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.82 E-value=5.2e-20 Score=152.83 Aligned_cols=121 Identities=20% Similarity=0.376 Sum_probs=90.5
Q ss_pred eEEEEEEcCC-CCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCcc
Q 048509 3 VNLSPQICES-KLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQ 55 (168)
Q Consensus 3 l~~~~~~~~~-~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~ 55 (168)
+.+.+..+.. +.|...|..++......++||||+++..+ ..+++.|+ +|+.+
T Consensus 254 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~-~g~~~ 332 (414)
T 3eiq_A 254 IRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFR-SGSSR 332 (414)
T ss_dssp CCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHS-CC---
T ss_pred ceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHH-cCCCc
Confidence 4566777764 45999999999998888999999999988 78899999 99999
Q ss_pred EEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCCCCC
Q 048509 56 VLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSC 126 (168)
Q Consensus 56 iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 126 (168)
|||||+++++|+|+|++ .+..+|+||+||+||.|+.|.+++|+++.+ ...+..+.+..+.
T Consensus 333 vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~--------~~~~~~~~~~~~~--- 401 (414)
T 3eiq_A 333 VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEED--------KRTLRDIETFYNT--- 401 (414)
T ss_dssp CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTH--------HHHHHHHHHHTTC---
T ss_pred EEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHH--------HHHHHHHHHHHcC---
Confidence 99999999999999998 567999999999999999999999999998 6677777776654
Q ss_pred CCcCCChhh
Q 048509 127 PVHSIPSSS 135 (168)
Q Consensus 127 ~~~~~~~~~ 135 (168)
+..++|.++
T Consensus 402 ~~~~~~~~~ 410 (414)
T 3eiq_A 402 SIEEMPLNV 410 (414)
T ss_dssp CCEECCC--
T ss_pred CccccChhh
Confidence 344455444
No 15
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.80 E-value=5e-19 Score=145.87 Aligned_cols=122 Identities=22% Similarity=0.365 Sum_probs=102.5
Q ss_pred ceEEEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCcc
Q 048509 2 SVNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQ 55 (168)
Q Consensus 2 ~l~~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~ 55 (168)
.+.+.+..+...+|...|..++......++||||+++..+ ..+++.|+ +++.+
T Consensus 224 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~~ 302 (391)
T 1xti_A 224 GLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFK-DFQRR 302 (391)
T ss_dssp TCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH-TTCCS
T ss_pred cceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHh-cCCCc
Confidence 3567888888999999999999988888999999999998 78899999 99999
Q ss_pred EEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCCCCC
Q 048509 56 VLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADHDSC 126 (168)
Q Consensus 56 iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 126 (168)
|||||+++++|+|+|++ .++.+|+||+||+||.|+.|.+++|+++.++ ...+..+.+....
T Consensus 303 vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~-------~~~~~~~~~~~~~--- 372 (391)
T 1xti_A 303 ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND-------AKILNDVQDRFEV--- 372 (391)
T ss_dssp EEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHH-------HHHHHHHHHHTTC---
T ss_pred EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccch-------HHHHHHHHHHhcC---
Confidence 99999999999999988 6689999999999999999999999997763 2345555555433
Q ss_pred CCcCCChh
Q 048509 127 PVHSIPSS 134 (168)
Q Consensus 127 ~~~~~~~~ 134 (168)
+..++|.+
T Consensus 373 ~~~~~~~~ 380 (391)
T 1xti_A 373 NISELPDE 380 (391)
T ss_dssp CCEECCSC
T ss_pred ChhhCCcc
Confidence 34445543
No 16
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.79 E-value=3.2e-19 Score=147.82 Aligned_cols=113 Identities=20% Similarity=0.396 Sum_probs=94.8
Q ss_pred eEEEEEEcC-CCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCcc
Q 048509 3 VNLSPQICE-SKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQ 55 (168)
Q Consensus 3 l~~~~~~~~-~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~ 55 (168)
+.+.+..+. ...|...|..++......++||||+++..| ..+++.|+ +|+.+
T Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~g~~~ 318 (412)
T 3fht_A 240 IKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFR-EGKEK 318 (412)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHH-TTSCS
T ss_pred ceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHH-CCCCc
Confidence 456666666 457889999999988888999999999988 88899999 99999
Q ss_pred EEEEccccccCCCcCCC--------C-------ChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHH
Q 048509 56 VLVCSDAMTSGMDVERA--------A-------YIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQ 120 (168)
Q Consensus 56 iLvaTdv~~rGlDi~~v--------~-------~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 120 (168)
|||||+++++|+|+|++ . +..+|+||+||+||.|+.|.+++|+++.++ ...+..+.+.
T Consensus 319 vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~-------~~~~~~i~~~ 391 (412)
T 3fht_A 319 VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHS-------MNILNRIQEH 391 (412)
T ss_dssp EEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHH-------HHHHHHHHHH
T ss_pred EEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhh-------HHHHHHHHHH
Confidence 99999999999999998 1 357999999999999999999999987652 2345555555
Q ss_pred hCC
Q 048509 121 ADH 123 (168)
Q Consensus 121 ~~~ 123 (168)
.+.
T Consensus 392 ~~~ 394 (412)
T 3fht_A 392 FNK 394 (412)
T ss_dssp HTC
T ss_pred HCC
Confidence 543
No 17
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.79 E-value=5.2e-19 Score=145.36 Aligned_cols=133 Identities=19% Similarity=0.341 Sum_probs=104.3
Q ss_pred eEEEEEEcC-CCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCcc
Q 048509 3 VNLSPQICE-SKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQ 55 (168)
Q Consensus 3 l~~~~~~~~-~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~ 55 (168)
+.+.+..+. ...+...|..++......++||||+++..| ..+++.|+ +|+.+
T Consensus 217 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~-~g~~~ 295 (395)
T 3pey_A 217 IKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFR-EGRSK 295 (395)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHH-TTSCC
T ss_pred ccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHH-CCCCC
Confidence 455666664 556888899998888888999999999988 88899999 99999
Q ss_pred EEEEccccccCCCcCCC---------C------ChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHH
Q 048509 56 VLVCSDAMTSGMDVERA---------A------YIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQ 120 (168)
Q Consensus 56 iLvaTdv~~rGlDi~~v---------~------~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 120 (168)
|||||+++++|+|+|++ . ++.+|+||+||+||.|+.|.+++|+.+.++ ...+..+.+.
T Consensus 296 vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~-------~~~~~~i~~~ 368 (395)
T 3pey_A 296 VLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNS-------FNILSAIQKY 368 (395)
T ss_dssp EEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHH-------HHHHHHHHHH
T ss_pred EEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHH-------HHHHHHHHHH
Confidence 99999999999999988 2 679999999999999999999999987662 2344445554
Q ss_pred hCCCCCCCcCCChhhHhhhhhhhhh
Q 048509 121 ADHDSCPVHSIPSSSIESLRPIYKS 145 (168)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (168)
.. ..+...+|....+.+.+..++
T Consensus 369 ~~--~~~~~~~~~~~~~~~~~~~~~ 391 (395)
T 3pey_A 369 FG--DIEMTRVPTDDWDEVEKIVKK 391 (395)
T ss_dssp TT--SCCCEECCSSCHHHHHHHHHH
T ss_pred hC--CceeecCChHHHHHHHHHHHH
Confidence 44 245556666555555554443
No 18
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.79 E-value=9e-19 Score=142.62 Aligned_cols=111 Identities=23% Similarity=0.420 Sum_probs=99.3
Q ss_pred eEEEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccE
Q 048509 3 VNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQV 56 (168)
Q Consensus 3 l~~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~i 56 (168)
+.+.++.++..+|...|..++.. ...++||||+++..+ ..+++.|+ +++.+|
T Consensus 214 ~~~~~~~~~~~~~~~~l~~~l~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~~v 291 (367)
T 1hv8_A 214 IEQSYVEVNENERFEALCRLLKN-KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFK-QKKIRI 291 (367)
T ss_dssp SEEEEEECCGGGHHHHHHHHHCS-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHH-TTSSSE
T ss_pred ceEEEEEeChHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHH-cCCCeE
Confidence 56778888889999999999973 456899999999988 77899999 999999
Q ss_pred EEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCC
Q 048509 57 LVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123 (168)
Q Consensus 57 LvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (168)
||||+++++|+|+|++ .++.+|+||+||+||.|+.|.+++++++.| ...+..+.+.++.
T Consensus 292 lv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~--------~~~~~~i~~~~~~ 359 (367)
T 1hv8_A 292 LIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRRE--------YKKLRYIERAMKL 359 (367)
T ss_dssp EEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTS--------HHHHHHHHHHHTC
T ss_pred EEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHH--------HHHHHHHHHHhCC
Confidence 9999999999999998 568999999999999999999999999999 6777777777765
No 19
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.76 E-value=4.6e-18 Score=147.50 Aligned_cols=112 Identities=28% Similarity=0.426 Sum_probs=88.6
Q ss_pred eEEEEEEcCCC-CHHH----HHHHHHhc-cCCCcEEEEcCCcchH-----------------------------HHHHHH
Q 048509 3 VNLSPQICESK-LKPI----YLIPLLRN-LGGEKFIVFASSVANS-----------------------------PKTLKA 47 (168)
Q Consensus 3 l~~~~~~~~~~-~K~~----~L~~ll~~-~~~~~~iIF~~t~~~~-----------------------------~~~~~~ 47 (168)
+.+.+..++.. .+.. .+...+.. ....++||||+|+..| ..+++.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~ 387 (563)
T 3i5x_A 308 IDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKR 387 (563)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHH
T ss_pred CceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHH
Confidence 44555555543 3322 22233333 3467999999999988 788999
Q ss_pred HHhCCCccEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHH
Q 048509 48 FRGKGHMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLL 118 (168)
Q Consensus 48 F~~~~~~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~ 118 (168)
|+ +|+.+|||||+++++|+|+|+| .++.+|+||+||+||+|+.|.+++|+++.| ...+..+.
T Consensus 388 f~-~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e--------~~~~~~l~ 458 (563)
T 3i5x_A 388 FK-KDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDE--------LPFVRELE 458 (563)
T ss_dssp HH-HCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGG--------HHHHHHHH
T ss_pred Hh-cCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhH--------HHHHHHHH
Confidence 99 9999999999999999999998 668999999999999999999999999998 66667776
Q ss_pred HHhCC
Q 048509 119 QQADH 123 (168)
Q Consensus 119 ~~~~~ 123 (168)
+....
T Consensus 459 ~~~~~ 463 (563)
T 3i5x_A 459 DAKNI 463 (563)
T ss_dssp HHHCC
T ss_pred HHhCC
Confidence 65543
No 20
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.75 E-value=3.2e-18 Score=148.72 Aligned_cols=99 Identities=16% Similarity=0.275 Sum_probs=89.4
Q ss_pred EEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccEEE
Q 048509 5 LSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQVLV 58 (168)
Q Consensus 5 ~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~iLv 58 (168)
..|.+.+..++...|..++......++||||+|+..| .++++.|+ +++.+|||
T Consensus 213 l~~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~-~g~~~vlV 291 (523)
T 1oyw_A 213 IRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQ-RDDLQIVV 291 (523)
T ss_dssp EEEEEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH-TTSCSEEE
T ss_pred eEEEEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHH-cCCCeEEE
Confidence 3456666788899999999888778999999999998 78999999 99999999
Q ss_pred EccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchh
Q 048509 59 CSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDK 104 (168)
Q Consensus 59 aTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~ 104 (168)
||+++++|+|+|+| .++++|+||+||+||.|.+|.+++|+++.|..
T Consensus 292 aT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~ 346 (523)
T 1oyw_A 292 ATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346 (523)
T ss_dssp ECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHH
T ss_pred EechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHH
Confidence 99999999999999 66899999999999999999999999887743
No 21
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=5.3e-18 Score=148.32 Aligned_cols=112 Identities=28% Similarity=0.415 Sum_probs=88.6
Q ss_pred eEEEEEEcCCC-CHH----HHHHHHHhc-cCCCcEEEEcCCcchH-----------------------------HHHHHH
Q 048509 3 VNLSPQICESK-LKP----IYLIPLLRN-LGGEKFIVFASSVANS-----------------------------PKTLKA 47 (168)
Q Consensus 3 l~~~~~~~~~~-~K~----~~L~~ll~~-~~~~~~iIF~~t~~~~-----------------------------~~~~~~ 47 (168)
+.+.+..++.. .+. ..+...+.. ....++||||+|+..| ..++++
T Consensus 257 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~ 336 (579)
T 3sqw_A 257 IDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKR 336 (579)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHH
T ss_pred cceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHH
Confidence 45556665543 222 223333333 3467999999999988 778999
Q ss_pred HHhCCCccEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHH
Q 048509 48 FRGKGHMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLL 118 (168)
Q Consensus 48 F~~~~~~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~ 118 (168)
|+ +|+.+||||||++++|+|+|+| .++++|+||+||+||+|+.|.|++|+++.| ...+..+.
T Consensus 337 F~-~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e--------~~~~~~l~ 407 (579)
T 3sqw_A 337 FK-KDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDE--------LPFVRELE 407 (579)
T ss_dssp HH-HCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGG--------HHHHHHHH
T ss_pred hh-cCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccH--------HHHHHHHH
Confidence 99 9999999999999999999999 668999999999999999999999999998 56666666
Q ss_pred HHhCC
Q 048509 119 QQADH 123 (168)
Q Consensus 119 ~~~~~ 123 (168)
+....
T Consensus 408 ~~~~~ 412 (579)
T 3sqw_A 408 DAKNI 412 (579)
T ss_dssp HHHCC
T ss_pred HHhCC
Confidence 65543
No 22
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.75 E-value=7.7e-20 Score=156.02 Aligned_cols=99 Identities=23% Similarity=0.418 Sum_probs=0.0
Q ss_pred eEEEEEEcC-CCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCcc
Q 048509 3 VNLSPQICE-SKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQ 55 (168)
Q Consensus 3 l~~~~~~~~-~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~ 55 (168)
+.+.++.++ ...+...|..++......++||||+++..| ..+++.|+ +|+.+
T Consensus 307 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~-~g~~~ 385 (479)
T 3fmp_B 307 IKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFR-EGKEK 385 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHH-cCCCc
Confidence 456666666 467888999998877778999999999988 68899999 99999
Q ss_pred EEEEccccccCCCcCCCC---------------ChhhHHhhhcccccCCCcceEEEEeeCCc
Q 048509 56 VLVCSDAMTSGMDVERAA---------------YIKTYIHRAGPRARAGQNGHCFTLLPKDE 102 (168)
Q Consensus 56 iLvaTdv~~rGlDi~~v~---------------~~~~yihr~GR~gR~g~~g~~~~~~~~~~ 102 (168)
|||||+++++|+|+|++. ++.+|+||+||+||+|+.|.+++|+++.+
T Consensus 386 iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 386 VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp --------------------------------------------------------------
T ss_pred EEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcc
Confidence 999999999999999991 34689999999999999999999998766
No 23
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.74 E-value=1.5e-19 Score=149.03 Aligned_cols=112 Identities=22% Similarity=0.407 Sum_probs=0.0
Q ss_pred eEEEEEEcCCC-CHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCcc
Q 048509 3 VNLSPQICESK-LKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQ 55 (168)
Q Consensus 3 l~~~~~~~~~~-~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~ 55 (168)
+.+.+..+... .+...|..++......++||||+++..+ ..+++.|+ +|+.+
T Consensus 233 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~~ 311 (394)
T 1fuu_A 233 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFR-SGSSR 311 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHH-CCCCc
Confidence 34455555544 3888888888877778999999999988 67889999 99999
Q ss_pred EEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCC
Q 048509 56 VLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123 (168)
Q Consensus 56 iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (168)
|||||+++++|+|+|++ .++.+|+||+||+||.|+.|.+++|+++.+ ...+..+.+.++.
T Consensus 312 vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~--------~~~~~~l~~~~~~ 380 (394)
T 1fuu_A 312 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNED--------VGAMRELEKFYST 380 (394)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhH--------HHHHHHHHHHhCC
Confidence 99999999999999988 456899999999999999999999999988 5556666555443
No 24
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.73 E-value=1.1e-17 Score=139.92 Aligned_cols=90 Identities=19% Similarity=0.337 Sum_probs=77.6
Q ss_pred eEEEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH----------------------HHHHHHHHhCCCccEEEE-
Q 048509 3 VNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS----------------------PKTLKAFRGKGHMQVLVC- 59 (168)
Q Consensus 3 l~~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~----------------------~~~~~~F~~~~~~~iLva- 59 (168)
+.+.++.+ ++...|..+++.. +.++||||+++..| .+ +++|+ +|+.+||||
T Consensus 231 i~~~~~~~---~~~~~l~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~r~-~~~f~-~g~~~vLvat 304 (414)
T 3oiy_A 231 ITHVRISS---RSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKN-FEDFK-VGKINILIGV 304 (414)
T ss_dssp EEEEEESS---CCHHHHHHHHHHH-CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCHHHH-HHHHH-TTSCSEEEEE
T ss_pred chheeecc---CHHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCcchH-HHHHh-CCCCeEEEEe
Confidence 45555544 5777888888874 37999999999988 34 89999 999999999
Q ss_pred ---ccccccCCCcCC-C--------C---ChhhHHhhhcccccCC----CcceEEEEe
Q 048509 60 ---SDAMTSGMDVER-A--------A---YIKTYIHRAGPRARAG----QNGHCFTLL 98 (168)
Q Consensus 60 ---Tdv~~rGlDi~~-v--------~---~~~~yihr~GR~gR~g----~~g~~~~~~ 98 (168)
||++++|+|+|+ | + ++.+|+||+||+||.| +.|.+++|+
T Consensus 305 ~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 305 QAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp CCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred cCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE
Confidence 999999999999 7 4 6899999999999988 589999999
No 25
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.73 E-value=2e-17 Score=133.37 Aligned_cols=96 Identities=26% Similarity=0.491 Sum_probs=82.3
Q ss_pred eEEEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH----------------------HHHHHHHHhCCCccEEEEc
Q 048509 3 VNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS----------------------PKTLKAFRGKGHMQVLVCS 60 (168)
Q Consensus 3 l~~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~----------------------~~~~~~F~~~~~~~iLvaT 60 (168)
+.+.++.+....+. ....+......++||||+++..+ .+++++|+ +|+.+|||||
T Consensus 197 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~r~~~~~~f~-~~~~~vlv~T 273 (337)
T 2z0m_A 197 VEHKFVHVKDDWRS--KVQALRENKDKGVIVFVRTRNRVAKLVRLFDNAIELRGDLPQSVRNRNIDAFR-EGEYDMLITT 273 (337)
T ss_dssp EEEEEEECSSSSHH--HHHHHHTCCCSSEEEECSCHHHHHHHHTTCTTEEEECTTSCHHHHHHHHHHHH-TTSCSEEEEC
T ss_pred ceEEEEEeChHHHH--HHHHHHhCCCCcEEEEEcCHHHHHHHHHHhhhhhhhcCCCCHHHHHHHHHHHH-cCCCcEEEEc
Confidence 45566666655443 33666667778999999999988 88999999 9999999999
Q ss_pred cccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCc
Q 048509 61 DAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDE 102 (168)
Q Consensus 61 dv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~ 102 (168)
+++++|+|+|++ .++.+|+||+||+||.|+.|.+++|+. .+
T Consensus 274 ~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~ 323 (337)
T 2z0m_A 274 DVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NE 323 (337)
T ss_dssp HHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SC
T ss_pred CccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-Cc
Confidence 999999999988 568999999999999999999999999 66
No 26
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.69 E-value=1.3e-17 Score=144.12 Aligned_cols=112 Identities=21% Similarity=0.350 Sum_probs=78.5
Q ss_pred EEEEEEcC-CCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccE
Q 048509 4 NLSPQICE-SKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQV 56 (168)
Q Consensus 4 ~~~~~~~~-~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~i 56 (168)
.+.+..+. ...+...+..++......++||||+++..| ..+++.|+ +|+.+|
T Consensus 332 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~-~g~~~V 410 (508)
T 3fho_A 332 KQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFR-VGTSKV 410 (508)
T ss_dssp CCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHH-SSSCCC
T ss_pred eEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHH-CCCCeE
Confidence 34455554 556888899999888888999999999988 67899999 999999
Q ss_pred EEEccccccCCCcCCC---------------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHh
Q 048509 57 LVCSDAMTSGMDVERA---------------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQA 121 (168)
Q Consensus 57 LvaTdv~~rGlDi~~v---------------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 121 (168)
||||+++++|+|+|++ .++.+|+||+||+||+|+.|.+++|+.+.++ ...+..+.+..
T Consensus 411 LVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~-------~~~~~~i~~~~ 483 (508)
T 3fho_A 411 LVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKS-------WEEMNAIQEYF 483 (508)
T ss_dssp CEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTS-------SSSHHHHHHHS
T ss_pred EEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHH-------HHHHHHHHHHH
Confidence 9999999999999998 1367999999999999999999999985542 23455555555
Q ss_pred CC
Q 048509 122 DH 123 (168)
Q Consensus 122 ~~ 123 (168)
+.
T Consensus 484 ~~ 485 (508)
T 3fho_A 484 QR 485 (508)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 27
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.69 E-value=3.7e-17 Score=144.09 Aligned_cols=88 Identities=17% Similarity=0.281 Sum_probs=78.8
Q ss_pred HHHHHHHHHhcc-CCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccEEEEccccccCC
Q 048509 15 KPIYLIPLLRNL-GGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQVLVCSDAMTSGM 67 (168)
Q Consensus 15 K~~~L~~ll~~~-~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~iLvaTdv~~rGl 67 (168)
+...|..++... ...++||||+|+..| ..++++|+ +++.+|||||+++++||
T Consensus 253 ~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~-~g~~~VlVAT~a~~~GI 331 (591)
T 2v1x_A 253 FIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWS-ANEIQVVVATVAFGMGI 331 (591)
T ss_dssp HHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH-TTSSSEEEECTTSCTTC
T ss_pred HHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHH-cCCCeEEEEechhhcCC
Confidence 456677777643 567999999999998 78999999 99999999999999999
Q ss_pred CcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCch
Q 048509 68 DVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDED 103 (168)
Q Consensus 68 Di~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~ 103 (168)
|+|+| .++++|+||+||+||.|.+|.|++|+++.|.
T Consensus 332 D~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~ 376 (591)
T 2v1x_A 332 DKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDI 376 (591)
T ss_dssp CCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHH
T ss_pred CcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHH
Confidence 99999 6789999999999999999999999988773
No 28
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.68 E-value=2.6e-17 Score=148.95 Aligned_cols=115 Identities=14% Similarity=0.100 Sum_probs=86.6
Q ss_pred EEEcCCCCHHHHHHHHHhcc--CCCcEEEEcCCcchH------------------------HHHHHHHHhCCCccEEEEc
Q 048509 7 PQICESKLKPIYLIPLLRNL--GGEKFIVFASSVANS------------------------PKTLKAFRGKGHMQVLVCS 60 (168)
Q Consensus 7 ~~~~~~~~K~~~L~~ll~~~--~~~~~iIF~~t~~~~------------------------~~~~~~F~~~~~~~iLvaT 60 (168)
++++...+|...|..++... .+.++||||+|+..+ +..+-.+. -....|||||
T Consensus 409 ~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~a-g~~g~VlIAT 487 (844)
T 1tf5_A 409 LIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEA-GQKGAVTIAT 487 (844)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTT-TSTTCEEEEE
T ss_pred EEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHc-CCCCeEEEeC
Confidence 56677788999999988753 467899999999999 22222223 2245799999
Q ss_pred cccccCCCcC--------CC---------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCC
Q 048509 61 DAMTSGMDVE--------RA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123 (168)
Q Consensus 61 dv~~rGlDi~--------~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (168)
|+|+||+||+ ++ .+.+.|+||+|||||+|.+|.+++|++++|+..- .+....+..+++.+..
T Consensus 488 dmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~l~r-~f~~~~~~~~~~~~~~ 566 (844)
T 1tf5_A 488 NMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMR-RFGAERTMAMLDRFGM 566 (844)
T ss_dssp TTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSSGGG-SSHHHHHHHHHHHHTC
T ss_pred CccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHHHHH-HHhHHHHHHHHHhcCC
Confidence 9999999999 33 6789999999999999999999999998885331 0112345666666654
No 29
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.68 E-value=2.2e-16 Score=141.14 Aligned_cols=115 Identities=17% Similarity=0.198 Sum_probs=88.1
Q ss_pred EEEcCCCCHHHHHHHHHhcc--CCCcEEEEcCCcchH------------------------HHHHHHHHhCCCccEEEEc
Q 048509 7 PQICESKLKPIYLIPLLRNL--GGEKFIVFASSVANS------------------------PKTLKAFRGKGHMQVLVCS 60 (168)
Q Consensus 7 ~~~~~~~~K~~~L~~ll~~~--~~~~~iIF~~t~~~~------------------------~~~~~~F~~~~~~~iLvaT 60 (168)
.+++...+|...|...+... .+.++||||+|+..+ +..+-.+. -....|+|||
T Consensus 451 ~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~a-g~~g~VtVAT 529 (822)
T 3jux_A 451 LVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKA-GQKGMVTIAT 529 (822)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHH-HSTTCEEEEE
T ss_pred EEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhC-CCCCeEEEEc
Confidence 45667788999999998764 467999999999999 33333333 3344799999
Q ss_pred cccccCCCcC---CC--------------CChhhHHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCC
Q 048509 61 DAMTSGMDVE---RA--------------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123 (168)
Q Consensus 61 dv~~rGlDi~---~v--------------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (168)
|+|+||+||+ +| .+...|+||+|||||+|.+|.+++|++.+|+..- .+-...+..+++.++.
T Consensus 530 dmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~r-~fg~~~~~~~m~~~~~ 608 (822)
T 3jux_A 530 NMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLR-IFGSEQIGKVMNILKI 608 (822)
T ss_dssp TTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHHH-HTTHHHHHHHHHHSSC
T ss_pred chhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHHH-hhhHHHHHHHHHHcCC
Confidence 9999999997 22 5689999999999999999999999998884431 1112456667777664
No 30
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.66 E-value=1.7e-16 Score=147.73 Aligned_cols=96 Identities=21% Similarity=0.335 Sum_probs=77.1
Q ss_pred eEEEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------HHHHHHHHhCCCccEEEE---
Q 048509 3 VNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS--------------------PKTLKAFRGKGHMQVLVC--- 59 (168)
Q Consensus 3 l~~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~--------------------~~~~~~F~~~~~~~iLva--- 59 (168)
+.+.++ +.+|...|..+++.. ..++||||+|+..| .+++++|+ +|+.+||||
T Consensus 254 i~~~~~---~~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~~~~l~~F~-~G~~~VLVaTas 328 (1054)
T 1gku_B 254 VEDVAV---NDESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNKFRIGIVTATKKGDYEKFV-EGEIDHLIGTAH 328 (1054)
T ss_dssp EEEEEE---SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSSSHHHHHHH-HTSCSEEEEECC
T ss_pred ceEEEe---chhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccHHHHHHHHH-cCCCcEEEEecC
Confidence 445554 467888888998876 46899999999998 47899999 999999999
Q ss_pred -ccccccCCCcCCC------------------------------------------------------------------
Q 048509 60 -SDAMTSGMDVERA------------------------------------------------------------------ 72 (168)
Q Consensus 60 -Tdv~~rGlDi~~v------------------------------------------------------------------ 72 (168)
||+++||||+|+|
T Consensus 329 ~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 408 (1054)
T 1gku_B 329 YYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKER 408 (1054)
T ss_dssp ------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSC
T ss_pred CCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999995
Q ss_pred ---------------CChhhHHhhhcccccCCCcc--eEEEEeeCCch
Q 048509 73 ---------------AYIKTYIHRAGPRARAGQNG--HCFTLLPKDED 103 (168)
Q Consensus 73 ---------------~~~~~yihr~GR~gR~g~~g--~~~~~~~~~~~ 103 (168)
.++.+|+||+|||||+|..| .+++|+...+.
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~ 456 (1054)
T 1gku_B 409 PQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDS 456 (1054)
T ss_dssp CSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCH
T ss_pred ccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCH
Confidence 36889999999999988876 48888888883
No 31
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.63 E-value=2.2e-16 Score=142.77 Aligned_cols=95 Identities=16% Similarity=0.124 Sum_probs=79.7
Q ss_pred EEEcCCCCHHHHHHHHHhcc--CCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccEEE
Q 048509 7 PQICESKLKPIYLIPLLRNL--GGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQVLV 58 (168)
Q Consensus 7 ~~~~~~~~K~~~L~~ll~~~--~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~iLv 58 (168)
+++++..+|..+|..++... .+.++||||+|+..+ .-+.++|+ .| .|+|
T Consensus 418 ~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr-~G--~VtI 494 (853)
T 2fsf_A 418 LVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGY-PA--AVTI 494 (853)
T ss_dssp EEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTS-TT--CEEE
T ss_pred EEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCC-CC--eEEE
Confidence 56677888999999988653 467899999999998 22335566 66 7999
Q ss_pred EccccccCCCcCC--------------------------------C--------------CChhhHHhhhcccccCCCcc
Q 048509 59 CSDAMTSGMDVER--------------------------------A--------------AYIKTYIHRAGPRARAGQNG 92 (168)
Q Consensus 59 aTdv~~rGlDi~~--------------------------------v--------------~~~~~yihr~GR~gR~g~~g 92 (168)
|||+|+||+||+. | .+...|+||+|||||+|.+|
T Consensus 495 ATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G 574 (853)
T 2fsf_A 495 ATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAG 574 (853)
T ss_dssp EESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCE
T ss_pred ecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCe
Confidence 9999999999986 2 56799999999999999999
Q ss_pred eEEEEeeCCchh
Q 048509 93 HCFTLLPKDEDK 104 (168)
Q Consensus 93 ~~~~~~~~~~~~ 104 (168)
.+++|++.+|+.
T Consensus 575 ~s~~fls~eD~l 586 (853)
T 2fsf_A 575 SSRFYLSMEDAL 586 (853)
T ss_dssp EEEEEEETTSGG
T ss_pred eEEEEecccHHH
Confidence 999999988843
No 32
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.63 E-value=2.2e-16 Score=139.79 Aligned_cols=84 Identities=13% Similarity=0.175 Sum_probs=69.9
Q ss_pred HHHHHhccCCCcEEEEcCCcchH----------------------HHHHHHHHhCCCccEEEEccccccCCCcCCC----
Q 048509 19 LIPLLRNLGGEKFIVFASSVANS----------------------PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA---- 72 (168)
Q Consensus 19 L~~ll~~~~~~~~iIF~~t~~~~----------------------~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v---- 72 (168)
+...+.+. ..++||||+|+..| .+++++|+ +|+.+||||||+++||+|+| |
T Consensus 347 ll~~l~~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~R~~~l~~F~-~g~~~VLVaTdv~~rGiDi~-v~~VI 423 (618)
T 2whx_A 347 GFDWITDY-QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTK-LTDWDFVVTTDISEMGANFR-AGRVI 423 (618)
T ss_dssp SCHHHHHC-CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTTHHHHTTHHH-HSCCSEEEECGGGGTTCCCC-CSEEE
T ss_pred HHHHHHhC-CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChHHHHHHHHhhc-CCCcEEEEECcHHHcCcccC-ceEEE
Confidence 33344433 56999999999998 67899999 99999999999999999997 4
Q ss_pred -------------------------CChhhHHhhhcccccCCC-cceEEEEee---CCchhH
Q 048509 73 -------------------------AYIKTYIHRAGPRARAGQ-NGHCFTLLP---KDEDKL 105 (168)
Q Consensus 73 -------------------------~~~~~yihr~GR~gR~g~-~g~~~~~~~---~~~~~~ 105 (168)
.+.++|+||+|||||+|. +|.+++|++ +.|...
T Consensus 424 d~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~ 485 (618)
T 2whx_A 424 DPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDH 485 (618)
T ss_dssp ECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTC
T ss_pred ECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHH
Confidence 345689999999999964 999999997 666444
No 33
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.62 E-value=2.7e-16 Score=133.93 Aligned_cols=76 Identities=11% Similarity=0.222 Sum_probs=59.2
Q ss_pred CCcEEEEcCCcchH----------------------HHHHHHHHhCCCccEEEEccccccCCCcCCCC------------
Q 048509 28 GEKFIVFASSVANS----------------------PKTLKAFRGKGHMQVLVCSDAMTSGMDVERAA------------ 73 (168)
Q Consensus 28 ~~~~iIF~~t~~~~----------------------~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v~------------ 73 (168)
..++||||+|+..| .+++++|+ +|+++||||||++++|+|+| ++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~R~~~~~~F~-~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv 254 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIK-QKKPDFILATDIAEMGANLC-VERVLDCRTAFKPV 254 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC---------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecchhHHHHHhhhc-CCCceEEEECChhheeeccC-ceEEEeCCccceee
Confidence 46999999999998 67889999 99999999999999999999 63
Q ss_pred ----------------ChhhHHhhhcccccC-CCcceEEEEe---eCCchhH
Q 048509 74 ----------------YIKTYIHRAGPRARA-GQNGHCFTLL---PKDEDKL 105 (168)
Q Consensus 74 ----------------~~~~yihr~GR~gR~-g~~g~~~~~~---~~~~~~~ 105 (168)
+.++|+||+||+||+ |.+|.|++|+ ++.+...
T Consensus 255 ~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~ 306 (440)
T 1yks_A 255 LVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHH 306 (440)
T ss_dssp EETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTB
T ss_pred ecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhh
Confidence 346999999999997 6899999996 5666444
No 34
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.62 E-value=9.6e-16 Score=143.21 Aligned_cols=65 Identities=17% Similarity=0.351 Sum_probs=55.5
Q ss_pred ceEEEEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH----------------------HHHHHHHHhCCCccEEEE
Q 048509 2 SVNLSPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS----------------------PKTLKAFRGKGHMQVLVC 59 (168)
Q Consensus 2 ~l~~~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~----------------------~~~~~~F~~~~~~~iLva 59 (168)
++.+.++.+ +|...|..+|.... .++||||+|+..| .+ +++|+ +|+.+||||
T Consensus 287 ~i~~~~~~~---~k~~~L~~ll~~~~-~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~rr~-l~~F~-~G~~~VLVa 360 (1104)
T 4ddu_A 287 NITHVRISS---RSKEKLVELLEIFR-DGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKN-FEDFK-VGKINILIG 360 (1104)
T ss_dssp CEEEEEESC---CCHHHHHHHHHHHC-SSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSHHHH-HHHHH-HTSCSEEEE
T ss_pred CceeEEEec---CHHHHHHHHHHhcC-CCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCcHHH-HHHHH-CCCCCEEEE
Confidence 356666665 57788888888744 7999999999988 34 89999 999999999
Q ss_pred ----ccccccCCCcCC-C
Q 048509 60 ----SDAMTSGMDVER-A 72 (168)
Q Consensus 60 ----Tdv~~rGlDi~~-v 72 (168)
||+++||||+|+ |
T Consensus 361 tas~TdvlarGIDip~~V 378 (1104)
T 4ddu_A 361 VQAYYGKLTRGVDLPERI 378 (1104)
T ss_dssp ETTTHHHHCCSCCCTTTC
T ss_pred ecCCCCeeEecCcCCCCC
Confidence 999999999999 6
No 35
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.62 E-value=4.8e-16 Score=133.38 Aligned_cols=89 Identities=21% Similarity=0.341 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHhc----cCCCcEEEEcCCcchH--------------------------------------HHHHHHHH
Q 048509 12 SKLKPIYLIPLLRN----LGGEKFIVFASSVANS--------------------------------------PKTLKAFR 49 (168)
Q Consensus 12 ~~~K~~~L~~ll~~----~~~~~~iIF~~t~~~~--------------------------------------~~~~~~F~ 49 (168)
...|...|.++|.. ....++||||+++..+ .+++++|+
T Consensus 370 ~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 449 (556)
T 4a2p_A 370 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 449 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC--------------------------
T ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhc
Confidence 46789999999975 3467999999998877 47788999
Q ss_pred hC-CCccEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCch
Q 048509 50 GK-GHMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDED 103 (168)
Q Consensus 50 ~~-~~~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~ 103 (168)
+ |+++||||||++++|+|+|+| .++.+|+||+|| ||. ++|.++.|+++.+.
T Consensus 450 -~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 450 -TSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp -----CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHH
T ss_pred -ccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcch
Confidence 8 999999999999999999999 678999999999 999 89999999987763
No 36
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.61 E-value=4.4e-16 Score=133.28 Aligned_cols=90 Identities=24% Similarity=0.377 Sum_probs=71.2
Q ss_pred CCCHHHHHHHHHhcc----CCCcEEEEcCCcchH--------------------------------------HHHHHHHH
Q 048509 12 SKLKPIYLIPLLRNL----GGEKFIVFASSVANS--------------------------------------PKTLKAFR 49 (168)
Q Consensus 12 ~~~K~~~L~~ll~~~----~~~~~iIF~~t~~~~--------------------------------------~~~~~~F~ 49 (168)
...|...|.++|... ...++||||+++..+ .+++++|+
T Consensus 369 ~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 448 (555)
T 3tbk_A 369 ENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFR 448 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-----------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHh
Confidence 467889999988763 468999999999888 23788999
Q ss_pred hC-CCccEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCchh
Q 048509 50 GK-GHMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDK 104 (168)
Q Consensus 50 ~~-~~~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~ 104 (168)
+ |+++||||||++++|+|+|+| .++.+|+||+|| ||. +.|.++.|+++.+..
T Consensus 449 -~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 510 (555)
T 3tbk_A 449 -ASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVI 510 (555)
T ss_dssp ----CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHH
T ss_pred -cCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHH
Confidence 8 999999999999999999999 678999999999 998 999999999887743
No 37
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.60 E-value=2.4e-15 Score=136.59 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=86.5
Q ss_pred EEEcCCCCHHHHHHHHHhcc--CCCcEEEEcCCcchH------------------------HH--HHHHHHhCCCccEEE
Q 048509 7 PQICESKLKPIYLIPLLRNL--GGEKFIVFASSVANS------------------------PK--TLKAFRGKGHMQVLV 58 (168)
Q Consensus 7 ~~~~~~~~K~~~L~~ll~~~--~~~~~iIF~~t~~~~------------------------~~--~~~~F~~~~~~~iLv 58 (168)
++++...+|...|...+... .+.++||||+|+..+ +. +.+.|+ .| .|+|
T Consensus 437 ~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr-~G--~VtI 513 (922)
T 1nkt_A 437 LIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGR-RG--GVTV 513 (922)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTS-TT--CEEE
T ss_pred EEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCC-CC--eEEE
Confidence 45667778999999988653 457899999999998 22 334555 55 7999
Q ss_pred EccccccCCCcCCC-------------------------------------------------------------CChhh
Q 048509 59 CSDAMTSGMDVERA-------------------------------------------------------------AYIKT 77 (168)
Q Consensus 59 aTdv~~rGlDi~~v-------------------------------------------------------------~~~~~ 77 (168)
|||+|+||+||+.+ .+...
T Consensus 514 ATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~ri 593 (922)
T 1nkt_A 514 ATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRI 593 (922)
T ss_dssp EETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHH
T ss_pred ecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHH
Confidence 99999999999952 45688
Q ss_pred HHhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCC
Q 048509 78 YIHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123 (168)
Q Consensus 78 yihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (168)
|+||+|||||.|.+|.+++|++.+|+..- .+-...+..+++.+..
T Consensus 594 y~qr~GRTGRqGdpG~s~fflSleD~l~r-~f~~~~~~~~~~~~~~ 638 (922)
T 1nkt_A 594 DNQLRGRSGRQGDPGESRFYLSLGDELMR-RFNGAALETLLTRLNL 638 (922)
T ss_dssp HHHHHHTSSGGGCCEEEEEEEETTSHHHH-HTTHHHHHHHHHHTTC
T ss_pred HHHHhcccccCCCCeeEEEEechhHHHHH-HhhhHHHHHHHHHhCC
Confidence 99999999999999999999998885331 1112346667777654
No 38
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.59 E-value=5e-15 Score=132.03 Aligned_cols=92 Identities=20% Similarity=0.249 Sum_probs=76.7
Q ss_pred CCCHHHHHHHHHhcc--CCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccEEEEcccc
Q 048509 12 SKLKPIYLIPLLRNL--GGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQVLVCSDAM 63 (168)
Q Consensus 12 ~~~K~~~L~~ll~~~--~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~iLvaTdv~ 63 (168)
...+...|...|... ...++||||+|+..| .+++++|+ .|+++||||||++
T Consensus 427 ~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~-~g~~~VLVaT~~l 505 (661)
T 2d7d_A 427 IEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLR-LGKYDVLVGINLL 505 (661)
T ss_dssp STTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHH-HTSCSEEEESCCC
T ss_pred ccchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHh-cCCeEEEEecchh
Confidence 345555565555433 457999999999998 67888999 9999999999999
Q ss_pred ccCCCcCCC--------------CChhhHHhhhcccccCCCcceEEEEeeCCchhH
Q 048509 64 TSGMDVERA--------------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKL 105 (168)
Q Consensus 64 ~rGlDi~~v--------------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~ 105 (168)
++|+|+|+| .+..+|+||+||+||. ..|.+++|+++.+...
T Consensus 506 ~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~ 560 (661)
T 2d7d_A 506 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSM 560 (661)
T ss_dssp STTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHH
T ss_pred hCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHH
Confidence 999999997 2568999999999998 7999999999887543
No 39
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.58 E-value=8.1e-15 Score=130.71 Aligned_cols=93 Identities=19% Similarity=0.342 Sum_probs=77.1
Q ss_pred CCCCHHHHHHHHHhcc--CCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccEEEEccc
Q 048509 11 ESKLKPIYLIPLLRNL--GGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQVLVCSDA 62 (168)
Q Consensus 11 ~~~~K~~~L~~ll~~~--~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~iLvaTdv 62 (168)
+...+...|...|... ...++||||+|+..| .+++++|+ .|+++|||||++
T Consensus 420 ~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~-~g~~~VLvaT~~ 498 (664)
T 1c4o_A 420 PTENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLR-LGHYDCLVGINL 498 (664)
T ss_dssp CSTTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHH-TTSCSEEEESCC
T ss_pred cccchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhh-cCCceEEEccCh
Confidence 3445666665555543 467999999999998 67888999 999999999999
Q ss_pred cccCCCcCCC--------------CChhhHHhhhcccccCCCcceEEEEeeCCchhH
Q 048509 63 MTSGMDVERA--------------AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKL 105 (168)
Q Consensus 63 ~~rGlDi~~v--------------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~ 105 (168)
+++|+|+|+| .+..+|+||+||+||.+ .|.+++|+++.+...
T Consensus 499 l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~ 554 (664)
T 1c4o_A 499 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAM 554 (664)
T ss_dssp CCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHH
T ss_pred hhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHH
Confidence 9999999997 25679999999999985 899999999877543
No 40
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.58 E-value=8.4e-16 Score=131.42 Aligned_cols=80 Identities=14% Similarity=0.185 Sum_probs=65.0
Q ss_pred HHHHhccCCCcEEEEcCCcchH----------------------HHHHHHHHhCCCccEEEEccccccCCCcCC------
Q 048509 20 IPLLRNLGGEKFIVFASSVANS----------------------PKTLKAFRGKGHMQVLVCSDAMTSGMDVER------ 71 (168)
Q Consensus 20 ~~ll~~~~~~~~iIF~~t~~~~----------------------~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~------ 71 (168)
..++... .+++||||+|+..| ..+++.|+ +|+.+||||||++++|+|+|+
T Consensus 183 ~~~l~~~-~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~~R~~~~~~f~-~g~~~iLVaT~v~~~GiDip~~~VI~~ 260 (459)
T 2z83_A 183 YEWITEY-AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRKSYDTEYPKCK-NGDWDFVITTDISEMGANFGASRVIDC 260 (459)
T ss_dssp CHHHHHC-CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTTCCCCCGGGSS-SCCCSEEEESSCC---CCCSCSEEEEC
T ss_pred HHHHHhc-CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHHHHHHHHhhcc-CCCceEEEECChHHhCeecCCCEEEEC
Confidence 3444443 56999999999988 45677888 999999999999999999997
Q ss_pred ---------------------C-CChhhHHhhhcccccCCC-cceEEEEeeCC
Q 048509 72 ---------------------A-AYIKTYIHRAGPRARAGQ-NGHCFTLLPKD 101 (168)
Q Consensus 72 ---------------------v-~~~~~yihr~GR~gR~g~-~g~~~~~~~~~ 101 (168)
. .+..+|+||+||+||.|. +|.+++|+.+.
T Consensus 261 G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 261 RKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 1 455889999999999997 99999999875
No 41
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.57 E-value=4e-15 Score=124.03 Aligned_cols=90 Identities=26% Similarity=0.345 Sum_probs=80.4
Q ss_pred CCCCHHHHHHHHHhc----cCCCcEEEEcCCcchH----------------------------------HHHHHHHHhCC
Q 048509 11 ESKLKPIYLIPLLRN----LGGEKFIVFASSVANS----------------------------------PKTLKAFRGKG 52 (168)
Q Consensus 11 ~~~~K~~~L~~ll~~----~~~~~~iIF~~t~~~~----------------------------------~~~~~~F~~~~ 52 (168)
....|...|.++|.. ....++||||+++..+ .+++++|+ +|
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~-~~ 418 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFA-RG 418 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHH-HT
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHh-cC
Confidence 456789999999987 4578999999998887 56789999 99
Q ss_pred CccEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCc
Q 048509 53 HMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDE 102 (168)
Q Consensus 53 ~~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~ 102 (168)
+.+|||||+++++|+|+|++ .++..|+||+||+||.|. |.++.|+++.+
T Consensus 419 ~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t 476 (494)
T 1wp9_A 419 EFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGT 476 (494)
T ss_dssp SCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTS
T ss_pred CceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCC
Confidence 99999999999999999998 346889999999999998 99999999887
No 42
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.56 E-value=2.8e-15 Score=127.86 Aligned_cols=79 Identities=11% Similarity=0.157 Sum_probs=66.7
Q ss_pred HHHHhccCCCcEEEEcCCcchH----------------------HHHHHHHHhCCCccEEEEccccccCCCcCCC-----
Q 048509 20 IPLLRNLGGEKFIVFASSVANS----------------------PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA----- 72 (168)
Q Consensus 20 ~~ll~~~~~~~~iIF~~t~~~~----------------------~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v----- 72 (168)
..++... .+++||||+|+..| .++++.|+ +|+.+||||||++++|+|+|+.
T Consensus 181 ~~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~~~~~f~-~g~~~vLVaT~v~~~GiDip~~~VI~~ 258 (451)
T 2jlq_A 181 FDWITDY-QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTK-LTDWDFVVTTDISEMGANFRAGRVIDP 258 (451)
T ss_dssp CHHHHHC-CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTHHHHGGGGG-SSCCSEEEECGGGGSSCCCCCSEEEEC
T ss_pred HHHHHhC-CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHHHHHHHhhc-cCCceEEEECCHHHhCcCCCCCEEEEC
Confidence 3444443 45899999999988 67899999 9999999999999999999952
Q ss_pred -----------------------CChhhHHhhhcccccCCC-cceEEEEeeC
Q 048509 73 -----------------------AYIKTYIHRAGPRARAGQ-NGHCFTLLPK 100 (168)
Q Consensus 73 -----------------------~~~~~yihr~GR~gR~g~-~g~~~~~~~~ 100 (168)
.+..+|+||+||+||.|. +|.+++|...
T Consensus 259 ~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 259 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred CCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 346789999999999998 8999888753
No 43
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.55 E-value=5.7e-15 Score=133.64 Aligned_cols=89 Identities=21% Similarity=0.341 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHhc----cCCCcEEEEcCCcchH--------------------------------------HHHHHHHH
Q 048509 12 SKLKPIYLIPLLRN----LGGEKFIVFASSVANS--------------------------------------PKTLKAFR 49 (168)
Q Consensus 12 ~~~K~~~L~~ll~~----~~~~~~iIF~~t~~~~--------------------------------------~~~~~~F~ 49 (168)
...|+..|..+|.. ....++||||+++..+ ..++++|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~ 690 (797)
T 4a2q_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-------------------------
T ss_pred CChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhh
Confidence 46689999999975 3468999999998887 47788999
Q ss_pred hC-CCccEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCch
Q 048509 50 GK-GHMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDED 103 (168)
Q Consensus 50 ~~-~~~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~ 103 (168)
+ |+++|||||+++++|||+|+| .++..|+||+|| ||. +.|.++.|+++.+.
T Consensus 691 -~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 691 -TSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp ----CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred -ccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 8 999999999999999999999 678999999999 999 89999999987663
No 44
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.55 E-value=2.3e-15 Score=133.41 Aligned_cols=89 Identities=22% Similarity=0.343 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHhcc----CCCcEEEEcCCcchH--------------------------------------HHHHHHHH
Q 048509 12 SKLKPIYLIPLLRNL----GGEKFIVFASSVANS--------------------------------------PKTLKAFR 49 (168)
Q Consensus 12 ~~~K~~~L~~ll~~~----~~~~~iIF~~t~~~~--------------------------------------~~~~~~F~ 49 (168)
...|...|..+|... ...++||||+++..| .+++++|+
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~ 457 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 457 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC--------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHH
Confidence 567999999999865 467999999999988 34677899
Q ss_pred hC-CCccEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCch
Q 048509 50 GK-GHMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDED 103 (168)
Q Consensus 50 ~~-~~~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~ 103 (168)
+ |+.+|||||+++++|||+|+| .++++|+||+|| ||+ +.|.++.|+++.+.
T Consensus 458 -~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~ 518 (696)
T 2ykg_A 458 -ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGV 518 (696)
T ss_dssp ----CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHH
T ss_pred -hcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCH
Confidence 8 999999999999999999999 567899999999 998 88999999887663
No 45
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.54 E-value=2.2e-14 Score=132.55 Aligned_cols=89 Identities=21% Similarity=0.279 Sum_probs=80.2
Q ss_pred cCCCCHHHHHHHHHhccCCCcEEEEcCCcchH---------------------------HHHHHHHHhCCC--ccEEEEc
Q 048509 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANS---------------------------PKTLKAFRGKGH--MQVLVCS 60 (168)
Q Consensus 10 ~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~---------------------------~~~~~~F~~~~~--~~iLvaT 60 (168)
+....|...|..++......++||||+++..+ .+++++|+ +++ ++|||||
T Consensus 485 ~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~-~g~~~~~vLvaT 563 (968)
T 3dmq_A 485 WNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFA-EEDTGAQVLLCS 563 (968)
T ss_dssp TTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHH-STTSSCEEEECS
T ss_pred cCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHh-CCCCcccEEEec
Confidence 44567999999999987788999999999988 88999999 998 9999999
Q ss_pred cccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEee
Q 048509 61 DAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLP 99 (168)
Q Consensus 61 dv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~ 99 (168)
+++++|+|+|++ .++..|+||+||+||.|+.|.++++..
T Consensus 564 ~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~ 611 (968)
T 3dmq_A 564 EIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVP 611 (968)
T ss_dssp CCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEE
T ss_pred chhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEe
Confidence 999999999999 568999999999999999997666654
No 46
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.53 E-value=5e-14 Score=130.57 Aligned_cols=92 Identities=21% Similarity=0.243 Sum_probs=78.0
Q ss_pred EEEEcCCCCHHHHHHHHHhccCCCcEEEEcCCcchH--------------------------------------------
Q 048509 6 SPQICESKLKPIYLIPLLRNLGGEKFIVFASSVANS-------------------------------------------- 41 (168)
Q Consensus 6 ~~~~~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~-------------------------------------------- 41 (168)
++..+....+...|..++......++||||+|+..|
T Consensus 314 ~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~ 393 (997)
T 4a4z_A 314 FTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILK 393 (997)
T ss_dssp ---CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHH
T ss_pred ccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHH
Confidence 344455677888999999988888999999999877
Q ss_pred ---------------------HHHHHHHHhCCCccEEEEccccccCCCcCCC--------C---------ChhhHHhhhc
Q 048509 42 ---------------------PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA--------A---------YIKTYIHRAG 83 (168)
Q Consensus 42 ---------------------~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v--------~---------~~~~yihr~G 83 (168)
..+++.|+ .|.++|||||+++++|||+|++ . ++.+|+||+|
T Consensus 394 l~~~l~~gi~~~H~gl~~~~R~~v~~~F~-~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~G 472 (997)
T 4a4z_A 394 TRSLLERGIAVHHGGLLPIVKELIEILFS-KGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAG 472 (997)
T ss_dssp HHHHHTTTEEEECTTSCHHHHHHHHHHHH-TTCCSEEEECTHHHHSCCCCCSEEEESCSEEEETTEEEECCHHHHHHHHG
T ss_pred HHHHhhcCeeeecCCCCHHHHHHHHHHHH-CCCCcEEEEchHhhCCCCCCCceEEEeccccccCccCCCCCHHHHhHHhc
Confidence 45678899 9999999999999999999998 1 7899999999
Q ss_pred ccccCC--CcceEEEEe
Q 048509 84 PRARAG--QNGHCFTLL 98 (168)
Q Consensus 84 R~gR~g--~~g~~~~~~ 98 (168)
|+||.| ..|.++.++
T Consensus 473 RAGR~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 473 RAGRRGLDSTGTVIVMA 489 (997)
T ss_dssp GGCCTTTCSSEEEEEEC
T ss_pred ccccCCCCcceEEEEec
Confidence 999998 677787777
No 47
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.52 E-value=5.4e-14 Score=131.52 Aligned_cols=60 Identities=18% Similarity=0.386 Sum_probs=50.8
Q ss_pred HHHHHHHHhCCCccEEEEccccccCCCcCCC-----------------CChhhHHhhhcccccCC--CcceEEEEeeCCc
Q 048509 42 PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA-----------------AYIKTYIHRAGPRARAG--QNGHCFTLLPKDE 102 (168)
Q Consensus 42 ~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v-----------------~~~~~yihr~GR~gR~g--~~g~~~~~~~~~~ 102 (168)
..+++.|+ +|.++|||||+++++|||+|++ -++.+|+||+||+||.| ..|.+++++.+..
T Consensus 520 ~~v~~~F~-~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~ 598 (1108)
T 3l9o_A 520 EVIEILFQ-EGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 598 (1108)
T ss_dssp HHHHHHHH-HTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCC
T ss_pred HHHHHHHh-CCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Confidence 45677899 9999999999999999999999 14567999999999999 7899999987664
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.52 E-value=8.9e-15 Score=130.68 Aligned_cols=77 Identities=21% Similarity=0.266 Sum_probs=66.7
Q ss_pred CCCcEEEEcCCcchH----------------------HHHHHHHHhCCCccEEEEccccccCCCcCCCC-----------
Q 048509 27 GGEKFIVFASSVANS----------------------PKTLKAFRGKGHMQVLVCSDAMTSGMDVERAA----------- 73 (168)
Q Consensus 27 ~~~~~iIF~~t~~~~----------------------~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v~----------- 73 (168)
...++||||+|+..| .++++.|+ +|+.+||||||++++|+|+| +.
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~eR~~v~~~F~-~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p 486 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRKSYDTEYPKCK-NGDWDFVITTDISEMGANFG-ASRVIDCRKSVKP 486 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSSSHHHHGGGGG-TCCCSEEEECGGGGTTCCCC-CSEEEECCEECCE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChHHHHHHHHHHH-CCCceEEEECchhhcceeeC-CcEEEECCCcccc
Confidence 457999999999988 67899999 99999999999999999999 62
Q ss_pred ------------------ChhhHHhhhcccccC-CCcceEEEEe---eCCchhH
Q 048509 74 ------------------YIKTYIHRAGPRARA-GQNGHCFTLL---PKDEDKL 105 (168)
Q Consensus 74 ------------------~~~~yihr~GR~gR~-g~~g~~~~~~---~~~~~~~ 105 (168)
+.++|+||+||+||+ |+.|.|++|+ ++.+...
T Consensus 487 ~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~ 540 (673)
T 2wv9_A 487 TILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTML 540 (673)
T ss_dssp EEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTB
T ss_pred eeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHH
Confidence 237899999999999 7999999996 4555433
No 49
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.49 E-value=1.2e-14 Score=123.54 Aligned_cols=92 Identities=26% Similarity=0.420 Sum_probs=79.1
Q ss_pred cCCCCHHHHHHHHHhccCCCcEEEEcCCcchH---------------------HHHHHHHHhCCCccEEEEccccccCCC
Q 048509 10 CESKLKPIYLIPLLRNLGGEKFIVFASSVANS---------------------PKTLKAFRGKGHMQVLVCSDAMTSGMD 68 (168)
Q Consensus 10 ~~~~~K~~~L~~ll~~~~~~~~iIF~~t~~~~---------------------~~~~~~F~~~~~~~iLvaTdv~~rGlD 68 (168)
+....|...|.+++......++||||++...+ .+++++|+ +|+.+|||||+++++|+|
T Consensus 331 ~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~g~~~~~~R~~~~~~F~-~g~~~vLv~T~~~~~Gld 409 (472)
T 2fwr_A 331 FNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFR-TGRFRAIVSSQVLDEGID 409 (472)
T ss_dssp HSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTTCCBCCSSSCSHHHHTHHHHHH-HSSCSBCBCSSCCCSSSC
T ss_pred hcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhCcceeeCCCCHHHHHHHHHHHh-CCCCCEEEEcCchhcCcc
Confidence 44567889999999987788999999999888 78899999 999999999999999999
Q ss_pred cCCC---------CChhhHHhhhcccccCCCc---ceEEEEeeCCc
Q 048509 69 VERA---------AYIKTYIHRAGPRARAGQN---GHCFTLLPKDE 102 (168)
Q Consensus 69 i~~v---------~~~~~yihr~GR~gR~g~~---g~~~~~~~~~~ 102 (168)
+|++ .++..|+||+||+||.|.. ..++.|+++..
T Consensus 410 lp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t 455 (472)
T 2fwr_A 410 VPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGT 455 (472)
T ss_dssp SCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred cccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCC
Confidence 9998 6679999999999999843 35555666443
No 50
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.49 E-value=2.5e-14 Score=121.40 Aligned_cols=81 Identities=10% Similarity=0.146 Sum_probs=66.0
Q ss_pred HHHHHHHhccCCCcEEEEcCCcchH----------------------HHHHHHHHhCCCccEEEEccccccCCCcCCCC-
Q 048509 17 IYLIPLLRNLGGEKFIVFASSVANS----------------------PKTLKAFRGKGHMQVLVCSDAMTSGMDVERAA- 73 (168)
Q Consensus 17 ~~L~~ll~~~~~~~~iIF~~t~~~~----------------------~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v~- 73 (168)
..+..++.+. .+++||||+++..| .+++++|+ +|+.+|||||+++++|+|+|...
T Consensus 161 ~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~r~~~~~~f~-~g~~~vLVaT~v~e~GiDip~~~V 238 (431)
T 2v6i_A 161 NSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKTFESEYPKCK-SEKWDFVITTDISEMGANFKADRV 238 (431)
T ss_dssp SSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTTTHHHHTTHHH-HSCCSEEEECGGGGTSCCCCCSEE
T ss_pred HHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCccHHHHHHhhc-CCCCeEEEECchHHcCcccCCcEE
Confidence 3344555554 46899999999988 78899999 99999999999999999999321
Q ss_pred ------------------------ChhhHHhhhcccccCCC-cceEEEEee
Q 048509 74 ------------------------YIKTYIHRAGPRARAGQ-NGHCFTLLP 99 (168)
Q Consensus 74 ------------------------~~~~yihr~GR~gR~g~-~g~~~~~~~ 99 (168)
+..+|+||+||+||.|. .|.++++..
T Consensus 239 I~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~~ 289 (431)
T 2v6i_A 239 IDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYSG 289 (431)
T ss_dssp EECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEECS
T ss_pred EecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEcC
Confidence 67899999999999985 566666653
No 51
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.47 E-value=6.7e-14 Score=128.90 Aligned_cols=89 Identities=21% Similarity=0.347 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHhcc----CCCcEEEEcCCcchH--------------------------------------HHHHHHHH
Q 048509 12 SKLKPIYLIPLLRNL----GGEKFIVFASSVANS--------------------------------------PKTLKAFR 49 (168)
Q Consensus 12 ~~~K~~~L~~ll~~~----~~~~~iIF~~t~~~~--------------------------------------~~~~~~F~ 49 (168)
...|...|..+|... ...++||||+++..+ .+++++|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr 690 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (936)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhh
Confidence 466899999999863 457999999998887 47788999
Q ss_pred hC-CCccEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCch
Q 048509 50 GK-GHMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDED 103 (168)
Q Consensus 50 ~~-~~~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~ 103 (168)
+ |+++|||||+++++|||+|+| .++.+|+||+|| ||. ..|.++.|+++.+.
T Consensus 691 -~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 691 -TSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp ----CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred -ccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 8 999999999999999999999 678999999999 998 88999999987653
No 52
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.46 E-value=3.3e-13 Score=119.54 Aligned_cols=86 Identities=14% Similarity=0.294 Sum_probs=64.4
Q ss_pred CHHHHHHHHHhcc----C-CCcEEEEcCCcchH----------------------------------------HHHHHHH
Q 048509 14 LKPIYLIPLLRNL----G-GEKFIVFASSVANS----------------------------------------PKTLKAF 48 (168)
Q Consensus 14 ~K~~~L~~ll~~~----~-~~~~iIF~~t~~~~----------------------------------------~~~~~~F 48 (168)
.|...|..+|... . ..++||||+++..+ .+++++|
T Consensus 381 ~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F 460 (699)
T 4gl2_A 381 EKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKF 460 (699)
T ss_dssp -CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHH
Confidence 4555556665542 3 67999999998877 4788999
Q ss_pred HhCCCccEEEEccccccCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEeeCCch
Q 048509 49 RGKGHMQVLVCSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLPKDED 103 (168)
Q Consensus 49 ~~~~~~~iLvaTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~ 103 (168)
+ +|+.+|||||+++++|||+|+| .++.+|+||+||+||. |.+++|+.+.+.
T Consensus 461 ~-~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~---g~~~~l~~~~~~ 520 (699)
T 4gl2_A 461 R-TGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARAD---ESTYVLVAHSGS 520 (699)
T ss_dssp C-C---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSS---SCEEEEEEESSS
T ss_pred h-cCCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCC---CceEEEEEeCCc
Confidence 9 9999999999999999999999 6789999999996554 466666655443
No 53
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.45 E-value=1.7e-13 Score=128.53 Aligned_cols=87 Identities=20% Similarity=0.376 Sum_probs=73.1
Q ss_pred HHHHHHHHHhcc-CCCcEEEEcCCcchH----------------------------HHHHHHHHhCCCccEEEEcccccc
Q 048509 15 KPIYLIPLLRNL-GGEKFIVFASSVANS----------------------------PKTLKAFRGKGHMQVLVCSDAMTS 65 (168)
Q Consensus 15 K~~~L~~ll~~~-~~~~~iIF~~t~~~~----------------------------~~~~~~F~~~~~~~iLvaTdv~~r 65 (168)
+......++... ...+++|||+++..+ ++++++|+ +|+.+|||||+++++
T Consensus 798 ~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~-~g~~~VLVaT~v~e~ 876 (1151)
T 2eyq_A 798 SMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFH-HQRFNVLVCTTIIET 876 (1151)
T ss_dssp HHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHH-TTSCCEEEESSTTGG
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHH-cCCCcEEEECCccee
Confidence 344444455443 357999999999888 78999999 999999999999999
Q ss_pred CCCcCCC----------CChhhHHhhhcccccCCCcceEEEEeeCCc
Q 048509 66 GMDVERA----------AYIKTYIHRAGPRARAGQNGHCFTLLPKDE 102 (168)
Q Consensus 66 GlDi~~v----------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~ 102 (168)
|+|+|++ .++.+|+||+||+||.|+.|.|++++.+.+
T Consensus 877 GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 877 GIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp GSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred eecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 9999988 246889999999999999999999987643
No 54
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.45 E-value=4.9e-13 Score=124.10 Aligned_cols=58 Identities=19% Similarity=0.402 Sum_probs=52.1
Q ss_pred HHHHHHHhCCCccEEEEccccccCCCcCCC----C-------------ChhhHHhhhcccccCCC--cceEEEEeeCC
Q 048509 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERA----A-------------YIKTYIHRAGPRARAGQ--NGHCFTLLPKD 101 (168)
Q Consensus 43 ~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v----~-------------~~~~yihr~GR~gR~g~--~g~~~~~~~~~ 101 (168)
.+++.|+ +|.++|||||+++++|+|+|.+ . ++.+|+||+||+||.|. .|.|++|+++.
T Consensus 423 ~ve~~F~-~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 423 VIEILFQ-EGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp HHHHHHH-TTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred HHHHHHh-cCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 3567899 9999999999999999999998 2 56999999999999996 69999999866
No 55
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.45 E-value=7.8e-15 Score=130.68 Aligned_cols=76 Identities=18% Similarity=0.292 Sum_probs=61.4
Q ss_pred cCCCcEEEEcCCcchHHHHHHH-------------------HHhCCCccEEEEccccccCCCcCCCC-------------
Q 048509 26 LGGEKFIVFASSVANSPKTLKA-------------------FRGKGHMQVLVCSDAMTSGMDVERAA------------- 73 (168)
Q Consensus 26 ~~~~~~iIF~~t~~~~~~~~~~-------------------F~~~~~~~iLvaTdv~~rGlDi~~v~------------- 73 (168)
....++||||+|+..|+...+. |+ ++..+||||||+++||||+| |+
T Consensus 394 ~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~er~-~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~Vi 471 (666)
T 3o8b_A 394 IRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSVIP-TIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTV 471 (666)
T ss_dssp SSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGGSC-SSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEE
T ss_pred ccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHHHH-hCCCcEEEECChHHccCCCC-CcEEEecCccccccc
Confidence 3567999999999999333333 44 56679999999999999987 63
Q ss_pred -----------------ChhhHHhhhcccccCCCcceEEEEeeCCchhH
Q 048509 74 -----------------YIKTYIHRAGPRARAGQNGHCFTLLPKDEDKL 105 (168)
Q Consensus 74 -----------------~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~ 105 (168)
+.++|+||+||+|| |++|. ++|+++.+...
T Consensus 472 NyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 472 DFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp ECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred ccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 34789999999999 99999 99998877543
No 56
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.38 E-value=3.6e-13 Score=122.00 Aligned_cols=60 Identities=25% Similarity=0.455 Sum_probs=54.8
Q ss_pred HHHHHHHHhCCCccEEEEccccccCCCcCCC----------CChhhHHhhhcccccCCCcceEEEEeeCCc
Q 048509 42 PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA----------AYIKTYIHRAGPRARAGQNGHCFTLLPKDE 102 (168)
Q Consensus 42 ~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v----------~~~~~yihr~GR~gR~g~~g~~~~~~~~~~ 102 (168)
..++++|+ +|+++|||||+++++|+|+|++ .+...|.||+||+||+|++|.|++++.+.+
T Consensus 629 ~~v~~~F~-~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~ 698 (780)
T 1gm5_A 629 DRVMLEFA-EGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVG 698 (780)
T ss_dssp HHHHHHHT-TTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCC
T ss_pred HHHHHHHH-CCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCC
Confidence 89999999 9999999999999999999998 135778899999999999999999998544
No 57
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.38 E-value=4.6e-13 Score=107.45 Aligned_cols=92 Identities=15% Similarity=0.214 Sum_probs=65.1
Q ss_pred cCCCCHHHHHHHHHhcc--CCCcEEEEcCCcchH---------------------------HHHHHHHHhCC-Ccc-EEE
Q 048509 10 CESKLKPIYLIPLLRNL--GGEKFIVFASSVANS---------------------------PKTLKAFRGKG-HMQ-VLV 58 (168)
Q Consensus 10 ~~~~~K~~~L~~ll~~~--~~~~~iIF~~t~~~~---------------------------~~~~~~F~~~~-~~~-iLv 58 (168)
.....|+..|.++|... ...++||||++...+ .+++++|+ ++ +.+ +|+
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~-~~~~~~v~L~ 170 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQ-NNPSVKFIVL 170 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHH-HCTTCCEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhc-CCCCCCEEEE
Confidence 34677999999999876 578999999998766 77899999 87 777 789
Q ss_pred EccccccCCCcCCC---------CChhhHHhhhcccccCCCcceE--EEEeeCCc
Q 048509 59 CSDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHC--FTLLPKDE 102 (168)
Q Consensus 59 aTdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~--~~~~~~~~ 102 (168)
+|+++++|+|++.+ .++..|+||+||++|.|+.+.+ +.|++...
T Consensus 171 st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~T 225 (271)
T 1z5z_A 171 SVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 225 (271)
T ss_dssp ECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTS
T ss_pred ehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCC
Confidence 99999999999998 5689999999999999977654 66777664
No 58
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.35 E-value=2.2e-12 Score=115.13 Aligned_cols=59 Identities=24% Similarity=0.531 Sum_probs=52.2
Q ss_pred HHHHHHHhCCCccEEEEccccccCCCcCCC----C------------ChhhHHhhhcccccCC--CcceEEEEeeCCc
Q 048509 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERA----A------------YIKTYIHRAGPRARAG--QNGHCFTLLPKDE 102 (168)
Q Consensus 43 ~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v----~------------~~~~yihr~GR~gR~g--~~g~~~~~~~~~~ 102 (168)
.+++.|+ +|+.+|||||+++++|+|+|++ . +..+|+||+||+||.| ..|.|+.++++.+
T Consensus 313 ~v~~~f~-~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 313 VVEDAFR-RGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp HHHHHHH-TTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred HHHHHHH-CCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCcc
Confidence 4567799 9999999999999999999987 2 3678999999999988 5899999998776
No 59
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.34 E-value=8.5e-13 Score=119.50 Aligned_cols=99 Identities=13% Similarity=0.242 Sum_probs=73.0
Q ss_pred eEEEEEEcCCCCHHHH----HHHHHhccCCCcEEEEcCCcchHHHHHHHHH-----------------------------
Q 048509 3 VNLSPQICESKLKPIY----LIPLLRNLGGEKFIVFASSVANSPKTLKAFR----------------------------- 49 (168)
Q Consensus 3 l~~~~~~~~~~~K~~~----L~~ll~~~~~~~~iIF~~t~~~~~~~~~~F~----------------------------- 49 (168)
+.++|..++..++... +..++.....+++||||+++..+..+.+.++
T Consensus 274 v~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR 353 (773)
T 2xau_A 274 VELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQ 353 (773)
T ss_dssp EEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHH
T ss_pred eEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHH
Confidence 4556655556565443 3333334457899999999999822222221
Q ss_pred ------------hCCCccEEEEccccccCCCcCCC----C-----------------------ChhhHHhhhcccccCCC
Q 048509 50 ------------GKGHMQVLVCSDAMTSGMDVERA----A-----------------------YIKTYIHRAGPRARAGQ 90 (168)
Q Consensus 50 ------------~~~~~~iLvaTdv~~rGlDi~~v----~-----------------------~~~~yihr~GR~gR~g~ 90 (168)
+.|..+|||||+++++|||+|+| . +..+|+||+||+||. .
T Consensus 354 ~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~ 432 (773)
T 2xau_A 354 QRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-R 432 (773)
T ss_dssp GGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-S
T ss_pred HHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-C
Confidence 03678999999999999999998 1 568899999999999 8
Q ss_pred cceEEEEeeCCc
Q 048509 91 NGHCFTLLPKDE 102 (168)
Q Consensus 91 ~g~~~~~~~~~~ 102 (168)
+|.|+.|+++.+
T Consensus 433 ~G~~~~l~~~~~ 444 (773)
T 2xau_A 433 PGKCFRLYTEEA 444 (773)
T ss_dssp SEEEEESSCHHH
T ss_pred CCEEEEEecHHH
Confidence 999999998665
No 60
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.33 E-value=3.3e-12 Score=114.26 Aligned_cols=59 Identities=19% Similarity=0.310 Sum_probs=52.2
Q ss_pred HHHHHHHhCCCccEEEEccccccCCCcCCC----C-------------ChhhHHhhhcccccCC--CcceEEEEeeCCc
Q 048509 43 KTLKAFRGKGHMQVLVCSDAMTSGMDVERA----A-------------YIKTYIHRAGPRARAG--QNGHCFTLLPKDE 102 (168)
Q Consensus 43 ~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v----~-------------~~~~yihr~GR~gR~g--~~g~~~~~~~~~~ 102 (168)
.+++.|+ +|.++|||||+++++|+|+|++ . +..+|+||+||+||.| ..|.|+.++++.+
T Consensus 311 ~v~~~f~-~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 311 LVEENFR-KGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp HHHHHHH-TTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSC
T ss_pred HHHHHHH-CCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCcc
Confidence 4667899 9999999999999999999987 2 2578999999999988 6899999998777
No 61
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.32 E-value=1.2e-11 Score=110.48 Aligned_cols=60 Identities=22% Similarity=0.432 Sum_probs=52.3
Q ss_pred HHHHHHHHhCCCccEEEEccccccCCCcCCC----C----------------ChhhHHhhhcccccCC--CcceEEEEee
Q 048509 42 PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA----A----------------YIKTYIHRAGPRARAG--QNGHCFTLLP 99 (168)
Q Consensus 42 ~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v----~----------------~~~~yihr~GR~gR~g--~~g~~~~~~~ 99 (168)
..+++.|+ +|..+|||||+++++|+|+|++ . +..+|.||+||+||.| ..|.|+.+++
T Consensus 328 ~~v~~~f~-~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~ 406 (715)
T 2va8_A 328 DLIEEGFR-QRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVR 406 (715)
T ss_dssp HHHHHHHH-TTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECS
T ss_pred HHHHHHHH-cCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeC
Confidence 44667799 9999999999999999999988 2 2578999999999988 5899999988
Q ss_pred CCc
Q 048509 100 KDE 102 (168)
Q Consensus 100 ~~~ 102 (168)
+.+
T Consensus 407 ~~~ 409 (715)
T 2va8_A 407 DKE 409 (715)
T ss_dssp CGG
T ss_pred Cch
Confidence 766
No 62
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.29 E-value=4.6e-12 Score=110.72 Aligned_cols=82 Identities=18% Similarity=0.301 Sum_probs=64.8
Q ss_pred HHHHHhccC-CCcEEEEcCCcchH---------------------------------HHHHHHHHhCCCcc---EEEEcc
Q 048509 19 LIPLLRNLG-GEKFIVFASSVANS---------------------------------PKTLKAFRGKGHMQ---VLVCSD 61 (168)
Q Consensus 19 L~~ll~~~~-~~~~iIF~~t~~~~---------------------------------~~~~~~F~~~~~~~---iLvaTd 61 (168)
|..++.... ..++||||+++..| .+++++|+ +++.+ ||||||
T Consensus 429 l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~-~~~~~~~~ilvtt~ 507 (590)
T 3h1t_A 429 LTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQ-ELETSTPVILTTSQ 507 (590)
T ss_dssp HHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHH-CTTCCCCCEEEESS
T ss_pred HHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHh-CCCCCCCEEEEECC
Confidence 334444433 47999999999988 46789999 98877 899999
Q ss_pred ccccCCCcCCC---------CChhhHHhhhcccccCCC--cceEEEEeeCC
Q 048509 62 AMTSGMDVERA---------AYIKTYIHRAGPRARAGQ--NGHCFTLLPKD 101 (168)
Q Consensus 62 v~~rGlDi~~v---------~~~~~yihr~GR~gR~g~--~g~~~~~~~~~ 101 (168)
++++|+|+|+| .++..|+||+||+||.+. ....+++++--
T Consensus 508 ~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 508 LLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp TTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred hhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 99999999999 678999999999999875 44445555543
No 63
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.29 E-value=7e-12 Score=121.40 Aligned_cols=60 Identities=25% Similarity=0.364 Sum_probs=54.3
Q ss_pred HHHHHHHHhCCCccEEEEccccccCCCcCCC-------------------CChhhHHhhhcccccCCC--cceEEEEeeC
Q 048509 42 PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA-------------------AYIKTYIHRAGPRARAGQ--NGHCFTLLPK 100 (168)
Q Consensus 42 ~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v-------------------~~~~~yihr~GR~gR~g~--~g~~~~~~~~ 100 (168)
..+.+.|+ +|.++|||||+.+++|+|+|.+ -++.+|+||+|||||+|. .|.|++++.+
T Consensus 1229 ~~VE~lF~-~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~ 1307 (1724)
T 4f92_B 1229 RLVEQLFS-SGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQG 1307 (1724)
T ss_dssp HHHHHHHH-HTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEG
T ss_pred HHHHHHHH-CCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecc
Confidence 66778899 9999999999999999999987 246899999999999986 8999999988
Q ss_pred Cc
Q 048509 101 DE 102 (168)
Q Consensus 101 ~~ 102 (168)
.+
T Consensus 1308 ~~ 1309 (1724)
T 4f92_B 1308 SK 1309 (1724)
T ss_dssp GG
T ss_pred hH
Confidence 87
No 64
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.28 E-value=1.4e-12 Score=111.70 Aligned_cols=83 Identities=16% Similarity=0.229 Sum_probs=66.1
Q ss_pred HHHHHHHHHhcc---CCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCccEEEEc-cccc
Q 048509 15 KPIYLIPLLRNL---GGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQVLVCS-DAMT 64 (168)
Q Consensus 15 K~~~L~~ll~~~---~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~iLvaT-dv~~ 64 (168)
+...+..++... ...++||||+ ...+ .++++.|+ +|+.+||||| ++++
T Consensus 332 ~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~-~g~~~vLv~T~~~~~ 409 (510)
T 2oca_A 332 RNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAE-NGKGIIIVASYGVFS 409 (510)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHH-HCCSCEEEEEHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHh-CCCCCEEEEEcChhh
Confidence 445566666544 3456777777 4444 78899999 9999999999 9999
Q ss_pred cCCCcCCC---------CChhhHHhhhcccccCCCcceEEEEee
Q 048509 65 SGMDVERA---------AYIKTYIHRAGPRARAGQNGHCFTLLP 99 (168)
Q Consensus 65 rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~~~~~~ 99 (168)
+|+|+|++ .++..|+||+||+||.|..|.++++++
T Consensus 410 ~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 410 TGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999998 567899999999999998875566655
No 65
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.26 E-value=1.5e-11 Score=110.02 Aligned_cols=80 Identities=19% Similarity=0.299 Sum_probs=62.9
Q ss_pred cEEEEcCCcchH--------------------------HHHHHHHHhC--CCccEEEEccccccCCCcCCC-------C-
Q 048509 30 KFIVFASSVANS--------------------------PKTLKAFRGK--GHMQVLVCSDAMTSGMDVERA-------A- 73 (168)
Q Consensus 30 ~~iIF~~t~~~~--------------------------~~~~~~F~~~--~~~~iLvaTdv~~rGlDi~~v-------~- 73 (168)
..||||+|+..+ ..+++.|+ . |..+||||||++++|||+ +| .
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~-~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFN-DPNDPCKILVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHH-CTTSSCCEEEECGGGGSSCCC-CBSEEEESCSB
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHH-ccCCCeEEEEeCcHHHCCcCc-CccEEEECCcc
Confidence 457888888777 58999999 9 889999999999999999 67 1
Q ss_pred ---------------ChhhHHhhhcccccCCCc---ceEEEEeeCCchhHHHHHHHHHHHHHHHH
Q 048509 74 ---------------YIKTYIHRAGPRARAGQN---GHCFTLLPKDEDKLLYMFQVKRFKKLLQQ 120 (168)
Q Consensus 74 ---------------~~~~yihr~GR~gR~g~~---g~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 120 (168)
+..+|+||+||+||.|.. |.++.+ .+.+ ...+.+++..
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l-~~~d--------~~~~~~~~~~ 455 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTM-NHED--------LSLLKEILKR 455 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEES-STTH--------HHHHHHHHHS
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEE-ecch--------HHHHHHHHhc
Confidence 378999999999999965 655444 4555 4455555554
No 66
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.23 E-value=1e-11 Score=120.29 Aligned_cols=60 Identities=18% Similarity=0.269 Sum_probs=54.0
Q ss_pred HHHHHHHHhCCCccEEEEccccccCCCcCCC-------------------CChhhHHhhhcccccCC--CcceEEEEeeC
Q 048509 42 PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA-------------------AYIKTYIHRAGPRARAG--QNGHCFTLLPK 100 (168)
Q Consensus 42 ~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v-------------------~~~~~yihr~GR~gR~g--~~g~~~~~~~~ 100 (168)
..+.+.|+ +|.++|||||+.++.|+|+|.+ -++.+|.||+|||||.| ..|.++.+..+
T Consensus 394 ~~vE~~F~-~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~ 472 (1724)
T 4f92_B 394 TLVEDLFA-DKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSH 472 (1724)
T ss_dssp HHHHHHHH-TTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEES
T ss_pred HHHHHHHH-CCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecc
Confidence 66778899 9999999999999999999987 14789999999999987 58999999988
Q ss_pred Cc
Q 048509 101 DE 102 (168)
Q Consensus 101 ~~ 102 (168)
.+
T Consensus 473 ~~ 474 (1724)
T 4f92_B 473 GE 474 (1724)
T ss_dssp TT
T ss_pred hh
Confidence 87
No 67
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.14 E-value=5.7e-11 Score=101.43 Aligned_cols=91 Identities=15% Similarity=0.216 Sum_probs=71.5
Q ss_pred CCCCHHHHHHHHHhcc--CCCcEEEEcCCcchH---------------------------HHHHHHHHhCC-Ccc-EEEE
Q 048509 11 ESKLKPIYLIPLLRNL--GGEKFIVFASSVANS---------------------------PKTLKAFRGKG-HMQ-VLVC 59 (168)
Q Consensus 11 ~~~~K~~~L~~ll~~~--~~~~~iIF~~t~~~~---------------------------~~~~~~F~~~~-~~~-iLva 59 (168)
....|...|.+++... ...++||||++...+ .+++++|+ ++ ... +|+|
T Consensus 322 ~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~-~~~~~~vil~s 400 (500)
T 1z63_A 322 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQ-NNPSVKFIVLS 400 (500)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHH-HCTTCCCCEEE
T ss_pred hcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhc-CCCCCCEEEEe
Confidence 3467888899998865 467999999998876 77899999 87 555 7999
Q ss_pred ccccccCCCcCCC---------CChhhHHhhhcccccCCCcceE--EEEeeCCc
Q 048509 60 SDAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNGHC--FTLLPKDE 102 (168)
Q Consensus 60 Tdv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g~~--~~~~~~~~ 102 (168)
|+++++|+|++.+ .++..|+||+||++|.|+.+.+ +.|+....
T Consensus 401 t~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~t 454 (500)
T 1z63_A 401 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 454 (500)
T ss_dssp CCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTS
T ss_pred cccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCC
Confidence 9999999999998 5679999999999999976554 66667664
No 68
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.90 E-value=3.6e-09 Score=93.82 Aligned_cols=89 Identities=17% Similarity=0.146 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHhcc---CCCcEEEEcCCcchH--------------------------HHHHHHHHhCCCcc---EEEEc
Q 048509 13 KLKPIYLIPLLRNL---GGEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQ---VLVCS 60 (168)
Q Consensus 13 ~~K~~~L~~ll~~~---~~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~---iLvaT 60 (168)
..|+..|..++... ...++||||++...+ .+++++|+ ++... +|++|
T Consensus 398 s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~-~~~~~~~v~L~st 476 (644)
T 1z3i_X 398 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFN-NPSSPEFIFMLSS 476 (644)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHH-STTCCCCEEEEEG
T ss_pred ChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhc-CCCCCcEEEEEec
Confidence 45777777777653 467999999998877 78999999 98764 89999
Q ss_pred cccccCCCcCCC---------CChhhHHhhhcccccCCCcc--eEEEEeeCCc
Q 048509 61 DAMTSGMDVERA---------AYIKTYIHRAGPRARAGQNG--HCFTLLPKDE 102 (168)
Q Consensus 61 dv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~g--~~~~~~~~~~ 102 (168)
+++++|+|++.+ .++..|.|++||++|.|+.. .++.|++...
T Consensus 477 ~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~t 529 (644)
T 1z3i_X 477 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGT 529 (644)
T ss_dssp GGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTS
T ss_pred ccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCC
Confidence 999999999998 57899999999999999654 5666777664
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.76 E-value=1.1e-08 Score=92.81 Aligned_cols=90 Identities=22% Similarity=0.289 Sum_probs=74.9
Q ss_pred CCCHHHHHHHHHhccC--CCcEEEEcCCcchH--------------------------HHHHHHHHhCCCcc---EEEEc
Q 048509 12 SKLKPIYLIPLLRNLG--GEKFIVFASSVANS--------------------------PKTLKAFRGKGHMQ---VLVCS 60 (168)
Q Consensus 12 ~~~K~~~L~~ll~~~~--~~~~iIF~~t~~~~--------------------------~~~~~~F~~~~~~~---iLvaT 60 (168)
...|+..|..+|.... ..++||||.....+ .+++++|+ .+... +|++|
T Consensus 554 ~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~-~~~~~~~v~LlSt 632 (800)
T 3mwy_W 554 SSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFN-SPDSNDFVFLLST 632 (800)
T ss_dssp TCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTS-STTCSCCCEEEEH
T ss_pred cChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhh-CCCCCceEEEEec
Confidence 3568899999998753 56999999988777 77999999 86654 99999
Q ss_pred cccccCCCcCCC---------CChhhHHhhhcccccCCCc--ceEEEEeeCCc
Q 048509 61 DAMTSGMDVERA---------AYIKTYIHRAGPRARAGQN--GHCFTLLPKDE 102 (168)
Q Consensus 61 dv~~rGlDi~~v---------~~~~~yihr~GR~gR~g~~--g~~~~~~~~~~ 102 (168)
++++.|||++.+ .++..++||+||+.|.|+. ..++-|++...
T Consensus 633 ~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~T 685 (800)
T 3mwy_W 633 RAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDT 685 (800)
T ss_dssp HHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTS
T ss_pred ccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCC
Confidence 999999999998 5679999999999999964 45566777664
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.62 E-value=4.5e-08 Score=91.16 Aligned_cols=58 Identities=10% Similarity=0.157 Sum_probs=51.1
Q ss_pred HHHHHHHHhCCCccEEEEccccccCCCcCCC--------CChhhHHhhhcccccCCCc----ceEEEEeeC
Q 048509 42 PKTLKAFRGKGHMQVLVCSDAMTSGMDVERA--------AYIKTYIHRAGPRARAGQN----GHCFTLLPK 100 (168)
Q Consensus 42 ~~~~~~F~~~~~~~iLvaTdv~~rGlDi~~v--------~~~~~yihr~GR~gR~g~~----g~~~~~~~~ 100 (168)
..++++|+ +++++|||+||++.+|+|+|.+ .....|+|++||++|.+.. |.++.|+..
T Consensus 639 ~~i~~~Fk-~g~i~ILIvvd~lltGfDiP~l~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 639 RDLAQRVK-NQDIDLLIVVGMFLTGFDAPTLNTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp HHHHHHHH-TTSSSEEEESSTTSSSCCCTTEEEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred HHHHHHHH-cCCCeEEEEcchHHhCcCcccccEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 46788999 9999999999999999999999 4468899999999998754 888888763
No 71
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.10 E-value=0.00076 Score=58.41 Aligned_cols=43 Identities=14% Similarity=0.310 Sum_probs=24.9
Q ss_pred CCCcEEEEcCCcchH---------------------HHHHHHHHhCCCccEEE--EccccccCCCcCC
Q 048509 27 GGEKFIVFASSVANS---------------------PKTLKAFRGKGHMQVLV--CSDAMTSGMDVER 71 (168)
Q Consensus 27 ~~~~~iIF~~t~~~~---------------------~~~~~~F~~~~~~~iLv--aTdv~~rGlDi~~ 71 (168)
.++.++|||+|.... .++++.|+ .+. .||+ ||+.+++|||+|+
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~~~~~~q~~~~~~~~~l~~f~-~~~-~il~~V~~~~~~EGiD~~~ 448 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSGIPVIEENKKTRHEEVLELMK-TGK-YLVMLVMRAKESEGVEFRE 448 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTTSCEEESTTTCCHHHHHHHHH-TSC-CEEEEEC------------
T ss_pred CCCCEEEEeCCHHHHHHHHHHhccCceEecCCCCcHHHHHHHHh-cCC-eEEEEEecCceecceecCC
Confidence 457899999998766 67899999 764 6776 8999999999997
No 72
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=96.23 E-value=0.012 Score=54.34 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=28.9
Q ss_pred HhhhcccccCCCcceEEEEeeCCchhHHHHHHHHHHHHHHHHhCC
Q 048509 79 IHRAGPRARAGQNGHCFTLLPKDEDKLLYMFQVKRFKKLLQQADH 123 (168)
Q Consensus 79 ihr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (168)
.|--||+||-|.+|.+-.|++-+|+-. -.+-...+..+++.++.
T Consensus 676 nQLRGRaGRQGDPGsSrF~LSLeDdLm-r~fg~~~~~~~m~~l~~ 719 (997)
T 2ipc_A 676 NQLRGRAGRQGDPGGSRFYVSFDDDLM-RLFASDRVIAMLDRMGF 719 (997)
T ss_dssp HHHHHTSSCSSCCCEEEEEEESSSHHH-HHSSCTTHHHHHHHTCC
T ss_pred HHHhcccccCCCCCCeEEEEECChHHH-HhhchHHHHHHHHHcCC
Confidence 356699999999999999998766322 00001245567777654
No 73
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=84.80 E-value=1.8 Score=37.88 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=25.7
Q ss_pred CCcEEEEcCCcchH-----------------------HHHHHHHHhCCCccEEEEcc--ccccCCCcCCC
Q 048509 28 GEKFIVFASSVANS-----------------------PKTLKAFRGKGHMQVLVCSD--AMTSGMDVERA 72 (168)
Q Consensus 28 ~~~~iIF~~t~~~~-----------------------~~~~~~F~~~~~~~iLvaTd--v~~rGlDi~~v 72 (168)
++.++||++|.... ...+++|+ ++-.||+||. .++.|||+|+=
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~~~~~~~~q~~~~~~~~~ll~~f~--~~~~vL~~v~~gsf~EGiD~~g~ 515 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVSFEHMKEYRGIDQKELYSMLKKFR--RDHGTIFAVSGGRLSEGINFPGN 515 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCCSCCEECCTTCCSHHHHHHHHHHT--TSCCEEEEETTSCC--------C
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcchhccCCCChhHHHHHHHHhc--cCCcEEEEEecCceeccccCCCC
Confidence 56799999864433 46778887 5668999975 99999999975
No 74
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=77.49 E-value=2.8 Score=35.88 Aligned_cols=43 Identities=9% Similarity=0.154 Sum_probs=34.6
Q ss_pred CCCcEEEEcCCcchH--------------------HHHHHHHHhCCCccEEEEc--cccccCCCcC
Q 048509 27 GGEKFIVFASSVANS--------------------PKTLKAFRGKGHMQVLVCS--DAMTSGMDVE 70 (168)
Q Consensus 27 ~~~~~iIF~~t~~~~--------------------~~~~~~F~~~~~~~iLvaT--dv~~rGlDi~ 70 (168)
.++.++||++|.... .+.++.|+ ...-.||+|| ..++.|||+|
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~~~~~v~~q~~~~~~~~~~~~~~-~~~~~vl~~v~gg~~~EGiD~~ 456 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSRISLPKYVESEDSSVEDLYSAIS-ANNKVLIGSVGKGKLAEGIELR 456 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCCSSEEECCSSCCHHHHHHHTT-SSSSCEEEEESSCCSCCSSCCE
T ss_pred CCCCEEEEecCHHHHHHHHHhcCCcEEEcCCCCCHHHHHHHHH-hcCCeEEEEEecceeccccccc
Confidence 456899999887655 67788886 5555899998 6999999999
No 75
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=54.07 E-value=51 Score=26.61 Aligned_cols=90 Identities=11% Similarity=-0.050 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHhccC--CCcEEEEcCCcchHHHHHHHHHh---------------------CCCccEEEEccccccCCC
Q 048509 12 SKLKPIYLIPLLRNLG--GEKFIVFASSVANSPKTLKAFRG---------------------KGHMQVLVCSDAMTSGMD 68 (168)
Q Consensus 12 ~~~K~~~L~~ll~~~~--~~~~iIF~~t~~~~~~~~~~F~~---------------------~~~~~iLvaTdv~~rGlD 68 (168)
...|+..|-++|.... +.+++||++..... .++++|-. +....+.+.|....-|++
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~L-DilE~~l~~~~~~y~RlDG~~~~~~~k~~~~~~~i~Lltsag~~gin 185 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTM-DLLEALLLGNKVHIKRYDGHSIKSAAAANDFSCTVHLFSSEGINFTK 185 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHH-HHHHHHHTTSSCEEEESSSCCC-------CCSEEEEEEESSCCCTTT
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHH-HHHHHHHhcCCCceEeCCCCchhhhhhcccCCceEEEEECCCCCCcC
Confidence 4678999999988654 56999999965544 33333331 223445555665566676
Q ss_pred cC--CC------------CCh-hhHHhhhcccccC----CCcceEEEEeeCCc
Q 048509 69 VE--RA------------AYI-KTYIHRAGPRARA----GQNGHCFTLLPKDE 102 (168)
Q Consensus 69 i~--~v------------~~~-~~yihr~GR~gR~----g~~g~~~~~~~~~~ 102 (168)
.+ +. -++ ...+|.+-|+-|. +++-.++-|++.+.
T Consensus 186 ~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 186 YPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp SCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTS
T ss_pred cccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 43 12 112 3356655554443 35667888887655
No 76
>2y9m_B Peroxisome assembly protein 22; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9o_B 2y9p_B
Probab=38.07 E-value=28 Score=24.28 Aligned_cols=46 Identities=15% Similarity=0.275 Sum_probs=27.6
Q ss_pred cEEEEcCCcchHHHHHHHHHhCCCccEEEEcccc--ccCCCcCCC-CChhhH
Q 048509 30 KFIVFASSVANSPKTLKAFRGKGHMQVLVCSDAM--TSGMDVERA-AYIKTY 78 (168)
Q Consensus 30 ~~iIF~~t~~~~~~~~~~F~~~~~~~iLvaTdv~--~rGlDi~~v-~~~~~y 78 (168)
-=||.|++-...-+.++.++ +-..|+|||-+ +-|+|+..+ .++..|
T Consensus 63 yKIi~Csn~qG~ws~vK~Lk---k~~LL~cSdDl~~~~g~~~~~vP~Dl~rf 111 (130)
T 2y9m_B 63 HKIIYCDSMDGLWSCVRRLG---KFQCILNSRDFTSSGGSDAAVVPEDIGRF 111 (130)
T ss_dssp GGEEEESCHHHHHHHHHHHC---CSEEEECGGGTC-------CCSCTTGGGT
T ss_pred ceEEEeccHHHHHHHHHhcC---CceEEEechhhccccCcCcccCchHHHHH
Confidence 34777877766677777776 56678899877 569988888 444444
No 77
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=28.08 E-value=36 Score=25.02 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=16.5
Q ss_pred CCcEEEEcCCcchHHHHHHHHH
Q 048509 28 GEKFIVFASSVANSPKTLKAFR 49 (168)
Q Consensus 28 ~~~~iIF~~t~~~~~~~~~~F~ 49 (168)
..+++|.++|+..+.+..+.|+
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~ 119 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVIL 119 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHH
T ss_pred CceEEEEECcHHHHHHHHHHHH
Confidence 4589999999998855555544
No 78
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=25.38 E-value=75 Score=24.50 Aligned_cols=38 Identities=11% Similarity=0.110 Sum_probs=23.4
Q ss_pred CCCHHHH-HHHHHhcc----CCCcEEEEcCCcchHHHHHHHHH
Q 048509 12 SKLKPIY-LIPLLRNL----GGEKFIVFASSVANSPKTLKAFR 49 (168)
Q Consensus 12 ~~~K~~~-L~~ll~~~----~~~~~iIF~~t~~~~~~~~~~F~ 49 (168)
..-|... ++-++... ...++||.++|+.-|.++.+.|+
T Consensus 141 GsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~ 183 (300)
T 3fmo_B 141 GTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIE 183 (300)
T ss_dssp TSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHH
Confidence 4556543 44555433 23479999999999955544433
No 79
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=22.50 E-value=1.9e+02 Score=19.74 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=41.8
Q ss_pred HHHHHHHHhCCCccEE-EEccccccCC-----------CcCCC--CChhhHHhhhcccccCCCcceEEEEeeCCchhHHH
Q 048509 42 PKTLKAFRGKGHMQVL-VCSDAMTSGM-----------DVERA--AYIKTYIHRAGPRARAGQNGHCFTLLPKDEDKLLY 107 (168)
Q Consensus 42 ~~~~~~F~~~~~~~iL-vaTdv~~rGl-----------Di~~v--~~~~~yihr~GR~gR~g~~g~~~~~~~~~~~~~~~ 107 (168)
.++.+..+ +|+..++ +|.|+-..++ ++|-+ .+-...-+-+|+. ..-.++.+.++.+..+
T Consensus 47 ~~v~kal~-~gkaklViiA~D~~~~~~~~~l~~lc~~~~IP~~~v~sk~eLG~a~G~~----~~v~~vaI~d~~~s~i-- 119 (135)
T 2aif_A 47 NEATKALN-RGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRSKVALGRACGVS----RPVIAAAITSKDGSSL-- 119 (135)
T ss_dssp HHHHHHHH-TTCEEEEEEETTCSCHHHHHHHHHHHHHTTCCEEEESCHHHHHHHTTCS----SCCSEEEEECCTTCTT--
T ss_pred HHHHHHHH-cCCCeEEEEecCCChHHHHhHHHHHHHhcCCcEEEECCHHHHHHHhCCC----CcEEEEEEEcCCcHHH--
Confidence 78888899 8887655 8888876654 44433 4444444444442 2233566777776555
Q ss_pred HHHHHHHHHHHHHh
Q 048509 108 MFQVKRFKKLLQQA 121 (168)
Q Consensus 108 ~~~~~~~~~i~~~~ 121 (168)
...+..+.+..
T Consensus 120 ---~~~~~~~~~~~ 130 (135)
T 2aif_A 120 ---SSQITELKDQI 130 (135)
T ss_dssp ---HHHHHHHHHTT
T ss_pred ---HHHHHHHHHHH
Confidence 45566655543
No 80
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=21.77 E-value=84 Score=24.62 Aligned_cols=15 Identities=13% Similarity=0.160 Sum_probs=12.4
Q ss_pred CCCcEEEEcCCcchH
Q 048509 27 GGEKFIVFASSVANS 41 (168)
Q Consensus 27 ~~~~~iIF~~t~~~~ 41 (168)
...+++|.|+++..+
T Consensus 107 ~~~~~lil~P~~~L~ 121 (414)
T 3eiq_A 107 KATQALVLAPTRELA 121 (414)
T ss_dssp CSCCEEEECSSHHHH
T ss_pred CceeEEEEeChHHHH
Confidence 356899999999887
Done!