BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048511
(351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 103/240 (42%), Gaps = 54/240 (22%)
Query: 25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
L GHT + S+ FS +GE L SSS DK+I+IW A G T S ++ +
Sbjct: 22 LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 72
Query: 85 SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
+A + +LV+ S + + + L GH ++V+ + P
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 120
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
Q + I+S S D+++ IW + TG+ + + SA+ H++ DG I++ Y
Sbjct: 121 QSNLIVSGSFDESVRIWDVK--TGMCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 173
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
G +W +D DN P F + +S + Y+L+ + D T +++
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKLW 222
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 121/284 (42%), Gaps = 65/284 (22%)
Query: 16 TGKFVRACELKGHTDWIRSLDFS-----LPVCTSG------------------------E 46
TG F R LKGHTD ++ + F L C++
Sbjct: 139 TGDFERT--LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS 196
Query: 47 AISIL-----LVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSS 101
++SI+ +VS+S+DK I++W++ G T + +R+ V + +G ++ + S+
Sbjct: 197 SVSIMPNGDHIVSASRDKTIKMWEVQT-GYCVKTFTGHREWVRMVRPNQDGTLIASCSND 255
Query: 102 YQVSV--------ESLLIGHEDWVYSVQWEPPS--TAPSDGVSCQQPSS------ILSAS 145
V V ++ L H V + W P S ++ S+ + S +LS S
Sbjct: 256 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 315
Query: 146 MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNV 205
DKT+ +W + +TG+ + + + + F+ G G+ IL+ +W
Sbjct: 316 RDKTIKMW--DVSTGMCLMTLVGHDNWVRGVLFHSG-----GKFILSCADDKTLRVW--- 365
Query: 206 GVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
D N + K + H V + + +++ Y+++ S DQT +V+
Sbjct: 366 --DYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 19/134 (14%)
Query: 181 GHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQP---QKVPSGHFAAVMDISWSRSSDYL 237
GH SP R I + + + + +++ ++ GH +V DIS+ S L
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 165
Query: 238 LSVSHDQTTRV--FAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGA 295
S S D T ++ F ++ + ++ G H H+++ V+I+ G+H VS +
Sbjct: 166 ASCSADMTIKLWDFQGFECIRTMHG------------HDHNVSSVSIMPN-GDH-IVSAS 211
Query: 296 DEKVARVFEAPLSF 309
+K +++E +
Sbjct: 212 RDKTIKMWEVQTGY 225
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 101/239 (42%), Gaps = 54/239 (22%)
Query: 25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
L GHT + S+ FS +GE L SSS DK+I+IW A G T S ++ +
Sbjct: 22 LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 72
Query: 85 SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
+A + +LV+ S + + + L GH ++V+ + P
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 120
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
Q + I+S S D+++ IW + TG + + SA+ H++ DG I++ Y
Sbjct: 121 QSNLIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 173
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRV 248
G +W +D DN P F + +S + Y+L+ + D T ++
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKL 221
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 65/155 (41%), Gaps = 13/155 (8%)
Query: 49 SILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES 108
S LLVS+S DK ++IW ++ G T + V + ++V+GS V +
Sbjct: 80 SNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 109 LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSS-ILSASMDKTMMIWQPEKTTGIWMNVVT 167
+ G ++ P + P V + S I+S+S D IW T + T
Sbjct: 139 VKTGK-----CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD----TASGQCLKT 189
Query: 168 VGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLW 202
+ + + + F +SP+G+ ILA LW
Sbjct: 190 LIDDDNPPVSFV--KFSPNGKYILAATLDNTLKLW 222
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 101/239 (42%), Gaps = 54/239 (22%)
Query: 25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
L GHT + S+ FS +GE L SSS DK+I+IW A G T S ++ +
Sbjct: 22 LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 72
Query: 85 SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
+A + +LV+ S + + + L GH ++V+ + P
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 120
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
Q + I+S S D+++ IW + TG + + SA+ H++ DG I++ Y
Sbjct: 121 QSNLIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 173
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRV 248
G +W +D DN P F + +S + Y+L+ + D T ++
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKL 221
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 65/155 (41%), Gaps = 13/155 (8%)
Query: 49 SILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES 108
S LLVS+S DK ++IW ++ G T + V + ++V+GS V +
Sbjct: 80 SNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 109 LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSS-ILSASMDKTMMIWQPEKTTGIWMNVVT 167
+ G ++ P + P V + S I+S+S D IW T + T
Sbjct: 139 VKTGK-----CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD----TASGQCLKT 189
Query: 168 VGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLW 202
+ + + + F +SP+G+ ILA LW
Sbjct: 190 LIDDDNPPVSFV--KFSPNGKYILAATLDNTLKLW 222
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 85/199 (42%), Gaps = 25/199 (12%)
Query: 98 GSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK 157
G+S+ + + L GH WV S+ S QP+ +LSAS DKT++ W K
Sbjct: 1 GASNEVLVLRGTLEGHNGWVTSL-----------ATSAGQPNLLLSASRDKTLISW---K 46
Query: 158 TTGIWMNV-VTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQK 216
TG V V + + DG L+ + LW D+ + +
Sbjct: 47 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW-----DVATGETYQ 101
Query: 217 VPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFA-PWKNVASLMGENSWHEVAR--PQVH 273
GH + VM + + + ++S S D+T +V+ + +A+L+G N W R P
Sbjct: 102 RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEK 161
Query: 274 GHDINCVTIIQGKGNHRFV 292
D + VTII GN + V
Sbjct: 162 ADD-DSVTIISA-GNDKMV 178
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 31/196 (15%)
Query: 14 QRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA 73
Q+ G VR+ KGH+ ++ CT A +S+S DK +R+W +A G +
Sbjct: 52 QKFGVPVRS--FKGHSHIVQD-------CTL-TADGAYALSASWDKTLRLWDVA-TGETY 100
Query: 74 NTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL-------LIGHEDWVYSVQWEPPS 126
++ +V+S+ + ++++GS + V ++ L+GH DWV V+ P
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNE 160
Query: 127 TAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD 186
A D V +I+SA DK + W + + + H++ SPD
Sbjct: 161 KADDDSV------TIISAGNDKMVKAWNLNQFQ------IEADFIGHNS-NINTLTASPD 207
Query: 187 GRSILAHGYGGAFHLW 202
G I + G G LW
Sbjct: 208 GTLIASAGKDGEIMLW 223
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 54/240 (22%)
Query: 25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
L GHT + S+ FS +GE L SSS DK+I+IW A G T S ++ +
Sbjct: 43 LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 93
Query: 85 SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
+A + +LV+ S + + + L GH ++V+ + P
Sbjct: 94 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 141
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
Q + I+S S D+++ IW + TG + + SA+ H++ DG I++ Y
Sbjct: 142 QSNLIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 194
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
G +W +D DN P F + +S + Y+L+ + D T +++
Sbjct: 195 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKLW 243
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 54/240 (22%)
Query: 25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
L GHT + S+ FS +GE L SSS DK+I+IW A G T S ++ +
Sbjct: 25 LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 75
Query: 85 SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
+A + +LV+ S + + + L GH ++V+ + P
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 123
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
Q + I+S S D+++ IW + TG + + SA+ H++ DG I++ Y
Sbjct: 124 QSNLIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 176
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
G +W +D DN P F + +S + Y+L+ + D T +++
Sbjct: 177 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKLW 225
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 85/199 (42%), Gaps = 25/199 (12%)
Query: 98 GSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK 157
G+S+ + + L GH WV S+ S QP+ +LSAS DKT++ W K
Sbjct: 1 GASNEVLVLRGTLEGHNGWVTSL-----------ATSAGQPNLLLSASRDKTLISW---K 46
Query: 158 TTGIWMNV-VTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQK 216
TG V V + + DG L+ + LW D+ + +
Sbjct: 47 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW-----DVATGETYQ 101
Query: 217 VPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFA-PWKNVASLMGENSWHEVAR--PQVH 273
GH + VM + + + ++S S D+T +V+ + +A+L+G N W R P
Sbjct: 102 RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEK 161
Query: 274 GHDINCVTIIQGKGNHRFV 292
D + VTII GN + V
Sbjct: 162 ADD-DSVTIISA-GNDKMV 178
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 31/197 (15%)
Query: 14 QRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA 73
Q+ G VR+ KGH+ ++ CT A +S+S DK +R+W +A G +
Sbjct: 52 QKFGVPVRS--FKGHSHIVQD-------CTL-TADGAYALSASWDKTLRLWDVA-TGETY 100
Query: 74 NTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL-------LIGHEDWVYSVQWEPPS 126
++ +V+S+ + ++++GS + V ++ L+GH DWV V+ P
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNE 160
Query: 127 TAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD 186
A D V +I+SA DK + W + + + H++ SPD
Sbjct: 161 KADDDSV------TIISAGNDKMVKAWNLNQFQ------IEADFIGHNS-NINTLTASPD 207
Query: 187 GRSILAHGYGGAFHLWR 203
G I + G G LW
Sbjct: 208 GTLIASAGKDGEIMLWN 224
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 54/240 (22%)
Query: 25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
L GHT + S+ FS +GE L SSS DK+I+IW A G T S ++ +
Sbjct: 18 LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 68
Query: 85 SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
+A + +LV+ S + + + L GH ++V+ + P
Sbjct: 69 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 116
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
Q + I+S S D+++ IW + TG + + SA+ H++ DG I++ Y
Sbjct: 117 QSNLIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 169
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
G +W +D DN P F + +S + Y+L+ + D T +++
Sbjct: 170 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKLW 218
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 54/240 (22%)
Query: 25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
L GHT + S+ FS +GE L SSS DK+I+IW A G T S ++ +
Sbjct: 24 LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 74
Query: 85 SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
+A + +LV+ S + + + L GH ++V+ + P
Sbjct: 75 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 122
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
Q + I+S S D+++ IW + TG + + SA+ H++ DG I++ Y
Sbjct: 123 QSNLIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 175
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
G +W +D DN P F + +S + Y+L+ + D T +++
Sbjct: 176 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKLW 224
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 54/240 (22%)
Query: 25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
L GHT + S+ FS +GE L SSS DK+I+IW A G T S ++ +
Sbjct: 19 LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 69
Query: 85 SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
+A + +LV+ S + + + L GH ++V+ + P
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 117
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
Q + I+S S D+++ IW + TG + + SA+ H++ DG I++ Y
Sbjct: 118 QSNLIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 170
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
G +W +D DN P F + +S + Y+L+ + D T +++
Sbjct: 171 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKLW 219
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 54/240 (22%)
Query: 25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
L GHT + S+ FS +GE L SSS DK+I+IW A G T S ++ +
Sbjct: 20 LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 70
Query: 85 SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
+A + +LV+ S + + + L GH ++V+ + P
Sbjct: 71 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 118
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
Q + I+S S D+++ IW + TG + + SA+ H++ DG I++ Y
Sbjct: 119 QSNLIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 171
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
G +W +D DN P F + +S + Y+L+ + D T +++
Sbjct: 172 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKLW 220
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 54/240 (22%)
Query: 25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
L GHT + S+ FS +GE L SSS DK+I+IW A G T S ++ +
Sbjct: 41 LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 91
Query: 85 SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
+A + +LV+ S + + + L GH ++V+ + P
Sbjct: 92 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 139
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
Q + I+S S D+++ IW + TG + + SA+ H++ DG I++ Y
Sbjct: 140 QSNLIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 192
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
G +W +D DN P F + +S + Y+L+ + D T +++
Sbjct: 193 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKLW 241
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 54/240 (22%)
Query: 25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
L GHT + S+ FS +GE L SSS DK+I+IW A G T S ++ +
Sbjct: 25 LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 75
Query: 85 SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
+A + +LV+ S + + + L GH ++V+ + P
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 123
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
Q + I+S S D+++ IW + TG + + SA+ H++ DG I++ Y
Sbjct: 124 QSNLIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 176
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
G +W +D DN P F + +S + Y+L+ + D T +++
Sbjct: 177 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKLW 225
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 54/240 (22%)
Query: 25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
L GHT + S+ FS +GE L SSS DK+I+IW A G T S ++ +
Sbjct: 15 LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 65
Query: 85 SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
+A + +LV+ S + + + L GH ++V+ + P
Sbjct: 66 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 113
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
Q + I+S S D+++ IW + TG + + SA+ H++ DG I++ Y
Sbjct: 114 QSNLIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 166
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
G +W +D DN P F + +S + Y+L+ + D T +++
Sbjct: 167 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKLW 215
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 54/240 (22%)
Query: 25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
L GHT + S+ FS +GE L SSS DK+I+IW A G T S ++ +
Sbjct: 19 LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 69
Query: 85 SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
+A + +LV+ S + + + L GH ++V+ + P
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 117
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
Q + I+S S D+++ IW + TG + + SA+ H++ DG I++ Y
Sbjct: 118 QSNLIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 170
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
G +W +D DN P F + +S + Y+L+ + D T +++
Sbjct: 171 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKLW 219
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 54/240 (22%)
Query: 25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
L GHT + S+ FS +GE L SSS DK+I+IW A G T S ++ +
Sbjct: 36 LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 86
Query: 85 SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
+A + +LV+ S + + + L GH ++V+ + P
Sbjct: 87 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 134
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
Q + I+S S D+++ IW + TG + + SA+ H++ DG I++ Y
Sbjct: 135 QSNLIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 187
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
G +W +D DN P F + +S + Y+L+ + D T +++
Sbjct: 188 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKLW 236
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 54/240 (22%)
Query: 25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
L GHT + S+ FS +GE L SSS DK+I+IW A G T S ++ +
Sbjct: 25 LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 75
Query: 85 SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
+A + +LV+ S + + + L GH ++V+ + P
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 123
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
Q + I+S S D+++ IW + TG + + SA+ H++ DG I++ Y
Sbjct: 124 QSNLIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 176
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
G +W +D DN P F + +S + Y+L+ + D T +++
Sbjct: 177 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKLW 225
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 36/186 (19%)
Query: 25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
L GHT + S+ FS +GE L SSS DK+I+IW A G T S ++ +
Sbjct: 22 LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 72
Query: 85 SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
+A + +LV+ S + + + L GH ++V+ + P
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 120
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
Q + I+S S D+++ IW + TG+ + + SA+ H++ DG I++ Y
Sbjct: 121 QSNLIVSGSFDESVRIWDVK--TGMCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 173
Query: 197 GAFHLW 202
G +W
Sbjct: 174 GLCRIW 179
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 65/155 (41%), Gaps = 13/155 (8%)
Query: 49 SILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES 108
S LLVS+S DK ++IW ++ G T + V + ++V+GS V +
Sbjct: 80 SNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 109 LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSS-ILSASMDKTMMIWQPEKTTGIWMNVVT 167
+ G ++ P + P V + S I+S+S D IW T + T
Sbjct: 139 VKTG-----MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD----TASGQCLKT 189
Query: 168 VGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLW 202
+ + + + F +SP+G+ ILA LW
Sbjct: 190 LIDDDNPPVSFV--KFSPNGKYILAATLDNDLKLW 222
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 215 QKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
+K SGH + D++WS S+ L+S S D+T +++
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 95
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 103/229 (44%), Gaps = 36/229 (15%)
Query: 31 WIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYI 90
+IRS+ FS G+ L + ++D++IRIW + R Q + +++ SL +
Sbjct: 125 YIRSVCFS----PDGK----FLATGAEDRLIRIWDIENRKIVMILQG-HEQDIYSLDYFP 175
Query: 91 EGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTA--PSDGVSCQQPSSILSASMDK 148
G LV+GS V + L G S++ + A P DG I + S+D+
Sbjct: 176 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG------KYIAAGSLDR 229
Query: 149 TMMIWQPEKTTGIWMNVVTVGELSHSALG----FYGGHWSPDGRSILAHGYGGAFHLWRN 204
+ +W E TG V + + S G Y ++ DG+S+++ + LW N
Sbjct: 230 AVRVWDSE--TGFL--VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW-N 284
Query: 205 VGVDIDNWQPQKVPS---------GHFAAVMDISWSRSSDYLLSVSHDQ 244
+ + +N K P+ GH V+ ++ +++ +Y+LS S D+
Sbjct: 285 LQ-NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 332
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 61/145 (42%), Gaps = 36/145 (24%)
Query: 25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
L+GH I SLD+ P SG+ LVS S D+ +RIW L G + T S
Sbjct: 161 LQGHEQDIYSLDY-FP---SGDK----LVSGSGDRTVRIWDLRT-GQCSLTLSIEDGVTT 211
Query: 85 SLASYIEGPVLVAGSSSYQVSV----ESLLI-----------GHEDWVYSVQWEPPSTAP 129
S +G + AGS V V L+ GH+D VYSV
Sbjct: 212 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV--------- 262
Query: 130 SDGVSCQQPSSILSASMDKTMMIWQ 154
V + S++S S+D+++ +W
Sbjct: 263 ---VFTRDGQSVVSGSLDRSVKLWN 284
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 183 WSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH 242
+SPDG+ + +W DI+N + + GH + + + S D L+S S
Sbjct: 131 FSPDGKFLATGAEDRLIRIW-----DIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 243 DQTTRV 248
D+T R+
Sbjct: 186 DRTVRI 191
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 102/240 (42%), Gaps = 54/240 (22%)
Query: 25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
L GHT + S+ FS +GE L +SS DK+I+IW A G T S ++ +
Sbjct: 22 LAGHTKAVSSVKFS----PNGE----WLAASSADKLIKIWG-AYDGKFEKTISGHKLGIS 72
Query: 85 SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
+A + +LV+ S + + + L GH ++V+ + P
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 120
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
Q + I+S S D+++ IW + TG + + SA+ H++ DG I++ Y
Sbjct: 121 QSNLIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 173
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
G +W +D DN P F + +S + Y+L+ + D T +++
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKLW 222
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 79/187 (42%), Gaps = 25/187 (13%)
Query: 110 LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNV-VTV 168
L GH WV S+ S QP+ +LSAS DKT++ W K TG V V
Sbjct: 13 LEGHNGWVTSL-----------ATSAGQPNLLLSASRDKTLISW---KLTGDDQKFGVPV 58
Query: 169 GELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDI 228
+ + DG L+ + LW D+ + + GH + VM +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW-----DVATGETYQRFVGHKSDVMSV 113
Query: 229 SWSRSSDYLLSVSHDQTTRVFA-PWKNVASLMGENSWHEVAR--PQVHGHDINCVTIIQG 285
+ + ++S S D+T +V+ + +A+L+G N W R P D + VTII
Sbjct: 114 DIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADD-DSVTIISA 172
Query: 286 KGNHRFV 292
GN + V
Sbjct: 173 -GNDKMV 178
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 31/196 (15%)
Query: 14 QRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA 73
Q+ G VR+ KGH+ ++ CT A +S+S DK +R+W +A G +
Sbjct: 52 QKFGVPVRS--FKGHSHIVQD-------CTL-TADGAYALSASWDKTLRLWDVA-TGETY 100
Query: 74 NTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL-------LIGHEDWVYSVQWEPPS 126
++ +V+S+ + ++++GS + V ++ L+GH DWV V+ P
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNE 160
Query: 127 TAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD 186
A D V +I+SA DK + W + + + H++ SPD
Sbjct: 161 KADDDSV------TIISAGNDKMVKAWNLNQFQ------IEADFIGHNS-NINTLTASPD 207
Query: 187 GRSILAHGYGGAFHLW 202
G I + G G LW
Sbjct: 208 GTLIASAGKDGEIMLW 223
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 79/187 (42%), Gaps = 25/187 (13%)
Query: 110 LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNV-VTV 168
L GH WV S+ S QP+ +LSAS DKT++ W K TG V V
Sbjct: 7 LEGHNGWVTSL-----------ATSAGQPNLLLSASRDKTLISW---KLTGDDQKFGVPV 52
Query: 169 GELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDI 228
+ + DG L+ + LW D+ + + GH + VM +
Sbjct: 53 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW-----DVATGETYQRFVGHKSDVMSV 107
Query: 229 SWSRSSDYLLSVSHDQTTRVFA-PWKNVASLMGENSWHEVAR--PQVHGHDINCVTIIQG 285
+ + ++S S D+T +V+ + +A+L+G N W R P D + VTII
Sbjct: 108 DIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADD-DSVTIISA 166
Query: 286 KGNHRFV 292
GN + V
Sbjct: 167 -GNDKMV 172
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 31/196 (15%)
Query: 14 QRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA 73
Q+ G VR+ KGH+ ++ CT A +S+S DK +R+W +A G +
Sbjct: 46 QKFGVPVRS--FKGHSHIVQD-------CTL-TADGAYALSASWDKTLRLWDVA-TGETY 94
Query: 74 NTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL-------LIGHEDWVYSVQWEPPS 126
++ +V+S+ + ++++GS + V ++ L+GH DWV V+ P
Sbjct: 95 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNE 154
Query: 127 TAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD 186
A D V +I+SA DK + W + + + H++ SPD
Sbjct: 155 KADDDSV------TIISAGNDKMVKAWNLNQFQ------IEADFIGHNS-NINTLTASPD 201
Query: 187 GRSILAHGYGGAFHLW 202
G I + G G LW
Sbjct: 202 GTLIASAGKDGEIMLW 217
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 79/187 (42%), Gaps = 25/187 (13%)
Query: 110 LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNV-VTV 168
L GH WV S+ S QP+ +LSAS DKT++ W K TG V V
Sbjct: 13 LEGHNGWVTSL-----------ATSAGQPNLLLSASRDKTLISW---KLTGDDQKFGVPV 58
Query: 169 GELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDI 228
+ + DG L+ + LW D+ + + GH + VM +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW-----DVATGETYQRFVGHKSDVMSV 113
Query: 229 SWSRSSDYLLSVSHDQTTRVFA-PWKNVASLMGENSWHEVAR--PQVHGHDINCVTIIQG 285
+ + ++S S D+T +V+ + +A+L+G N W R P D + VTII
Sbjct: 114 DIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADD-DSVTIISA 172
Query: 286 KGNHRFV 292
GN + V
Sbjct: 173 -GNDKMV 178
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 31/196 (15%)
Query: 14 QRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA 73
Q+ G VR+ KGH+ ++ CT A +S+S DK +R+W +A G +
Sbjct: 52 QKFGVPVRS--FKGHSHIVQD-------CTL-TADGAYALSASWDKTLRLWDVA-TGETY 100
Query: 74 NTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL-------LIGHEDWVYSVQWEPPS 126
++ +V+S+ + ++++GS + V ++ L+GH DWV V+ P
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNE 160
Query: 127 TAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD 186
A D V +I+SA DK + W + + + H++ SPD
Sbjct: 161 KADDDSV------TIISAGNDKMVKAWNLNQFQ------IEADFIGHNS-NINTLTASPD 207
Query: 187 GRSILAHGYGGAFHLW 202
G I + G G LW
Sbjct: 208 GTLIASAGKDGEIMLW 223
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 71/316 (22%), Positives = 126/316 (39%), Gaps = 60/316 (18%)
Query: 5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIW 64
D + L+ R G+ ++ L GH+ + + FS G+ I+ S+S DK +++W
Sbjct: 160 DKTVKLWN--RNGQLLQT--LTGHSSSVWGVAFS----PDGQTIA----SASDDKTVKLW 207
Query: 65 KLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES-------LLIGHEDWV 117
G T + + V +A +G + + S V + + L GH V
Sbjct: 208 NR--NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 265
Query: 118 YSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALG 177
V + P DG +I SAS DKT+ +W G + +T HS+
Sbjct: 266 NGVAFRP------DG------QTIASASDDKTVKLWNRN---GQLLQTLT----GHSS-S 305
Query: 178 FYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYL 237
+G +SPDG++I + LW G Q + +GH ++V +++S +
Sbjct: 306 VWGVAFSPDGQTIASASDDKTVKLWNRNG------QHLQTLTGHSSSVWGVAFSPDGQTI 359
Query: 238 LSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE 297
S S D+T ++ W L+ + GH + + S +D+
Sbjct: 360 ASASDDKTVKL---WNRNGQLL----------QTLTGHSSSVRGVAFSPDGQTIASASDD 406
Query: 298 KVARVFEAPLSFLKTL 313
K +++ L+TL
Sbjct: 407 KTVKLWNRNGQLLQTL 422
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/316 (21%), Positives = 123/316 (38%), Gaps = 60/316 (18%)
Query: 5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIW 64
D + L+ R G+ ++ L GH+ + + F G+ I+ S+S DK +++W
Sbjct: 242 DKTVKLWN--RNGQLLQT--LTGHSSSVNGVAFR----PDGQTIA----SASDDKTVKLW 289
Query: 65 KLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES-------LLIGHEDWV 117
G T + + V +A +G + + S V + + L GH V
Sbjct: 290 NR--NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSV 347
Query: 118 YSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALG 177
+ V + P DG +I SAS DKT+ +W G + +T S +
Sbjct: 348 WGVAFSP------DG------QTIASASDDKTVKLWNRN---GQLLQTLTGHSSSVRGVA 392
Query: 178 FYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYL 237
F SPDG++I + LW G Q + +GH ++V +++S +
Sbjct: 393 F-----SPDGQTIASASDDKTVKLWNRNG------QLLQTLTGHSSSVWGVAFSPDDQTI 441
Query: 238 LSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE 297
S S D+T ++ W L+ + GH + + S +D+
Sbjct: 442 ASASDDKTVKL---WNRNGQLL----------QTLTGHSSSVRGVAFSPDGQTIASASDD 488
Query: 298 KVARVFEAPLSFLKTL 313
K +++ L+TL
Sbjct: 489 KTVKLWNRNGQLLQTL 504
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 104/252 (41%), Gaps = 47/252 (18%)
Query: 5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIW 64
D + L+ R G+ ++ L GH+ +R + FS G+ I+ S+S DK +++W
Sbjct: 365 DKTVKLWN--RNGQLLQT--LTGHSSSVRGVAFS----PDGQTIA----SASDDKTVKLW 412
Query: 65 KLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES-------LLIGHEDWV 117
G T + + V +A + + + S V + + L GH V
Sbjct: 413 NR--NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 470
Query: 118 YSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALG 177
V + P DG +I SAS DKT+ +W G + +T S +
Sbjct: 471 RGVAFSP------DG------QTIASASDDKTVKLWNRN---GQLLQTLTGHSSSVRGVA 515
Query: 178 FYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYL 237
F SPDG++I + LW G Q + +GH ++V +++S +
Sbjct: 516 F-----SPDGQTIASASDDKTVKLWNRNG------QLLQTLTGHSSSVWGVAFSPDGQTI 564
Query: 238 LSVSHDQTTRVF 249
S S D+T +++
Sbjct: 565 ASASSDKTVKLW 576
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 103/252 (40%), Gaps = 47/252 (18%)
Query: 5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIW 64
D + L+ R G+ ++ L GH+ + + FS G+ I+ S+S DK +++W
Sbjct: 324 DKTVKLWN--RNGQHLQT--LTGHSSSVWGVAFS----PDGQTIA----SASDDKTVKLW 371
Query: 65 KLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES-------LLIGHEDWV 117
G T + + V +A +G + + S V + + L GH V
Sbjct: 372 NR--NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 429
Query: 118 YSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALG 177
+ V + P +I SAS DKT+ +W G + +T S +
Sbjct: 430 WGVAFSP------------DDQTIASASDDKTVKLWNRN---GQLLQTLTGHSSSVRGVA 474
Query: 178 FYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYL 237
F SPDG++I + LW G Q + +GH ++V +++S +
Sbjct: 475 F-----SPDGQTIASASDDKTVKLWNRNG------QLLQTLTGHSSSVRGVAFSPDGQTI 523
Query: 238 LSVSHDQTTRVF 249
S S D+T +++
Sbjct: 524 ASASDDKTVKLW 535
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 79/204 (38%), Gaps = 39/204 (19%)
Query: 110 LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVG 169
L GH V+ V + P DG +I SAS DKT+ +W G + +T
Sbjct: 53 LTGHSSSVWGVAFSP------DG------QTIASASDDKTVKLWNRN---GQLLQTLTGH 97
Query: 170 ELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDIS 229
S + F SPDG++I + LW G Q + +GH ++V ++
Sbjct: 98 SSSVRGVAF-----SPDGQTIASASDDKTVKLWNRNG------QLLQTLTGHSSSVWGVA 146
Query: 230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNH 289
+S + S S D+T ++ W L+ + GH + +
Sbjct: 147 FSPDGQTIASASDDKTVKL---WNRNGQLL----------QTLTGHSSSVWGVAFSPDGQ 193
Query: 290 RFVSGADEKVARVFEAPLSFLKTL 313
S +D+K +++ L+TL
Sbjct: 194 TIASASDDKTVKLWNRNGQLLQTL 217
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 27/174 (15%)
Query: 140 SILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAF 199
+I SAS DKT+ +W G + +T HS+ +G +SPDG++I +
Sbjct: 30 TIASASDDKTVKLWNRN---GQLLQTLT----GHSS-SVWGVAFSPDGQTIASASDDKTV 81
Query: 200 HLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM 259
LW G Q + +GH ++V +++S + S S D+T ++ W L+
Sbjct: 82 KLWNRNG------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL---WNRNGQLL 132
Query: 260 GENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTL 313
+ GH + + S +D+K +++ L+TL
Sbjct: 133 ----------QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL 176
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 57/151 (37%), Gaps = 19/151 (12%)
Query: 163 MNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHF 222
M V L + G +SPDG++I + LW G Q + +GH
Sbjct: 4 MGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG------QLLQTLTGHS 57
Query: 223 AAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTI 282
++V +++S + S S D+T ++ W L+ + GH + +
Sbjct: 58 SSVWGVAFSPDGQTIASASDDKTVKL---WNRNGQLL----------QTLTGHSSSVRGV 104
Query: 283 IQGKGNHRFVSGADEKVARVFEAPLSFLKTL 313
S +D+K +++ L+TL
Sbjct: 105 AFSPDGQTIASASDDKTVKLWNRNGQLLQTL 135
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 86/216 (39%), Gaps = 34/216 (15%)
Query: 103 QVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQ---PEKTT 159
Q+++ L GH WV + P Q P ILSAS DKT+++W+ E
Sbjct: 27 QMTLRGTLKGHNGWVTQIATTP-----------QFPDMILSASRDKTIIMWKLTRDETNY 75
Query: 160 GIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS 219
GI + S + S DG+ L+ + G LW D+ +
Sbjct: 76 GIPQRALRGHSHFVSDVVI-----SSDGQFALSGSWDGTLRLW-----DLTTGTTTRRFV 125
Query: 220 GHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINC 279
GH V+ +++S + ++S S D+T ++ W + + + H ++C
Sbjct: 126 GHTKDVLSVAFSSDNRQIVSGSRDKTIKL---WNTLGVC------KYTVQDESHSEWVSC 176
Query: 280 VTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLNH 315
V N VS +K+ +V+ LKT NH
Sbjct: 177 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT-NH 211
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 89/255 (34%), Gaps = 95/255 (37%)
Query: 11 YRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKL---- 66
++ T + LKGH W+ + + +++S+S+DK I +WKL
Sbjct: 20 FQSMMTEQMTLRGTLKGHNGWVTQI-------ATTPQFPDMILSASRDKTIIMWKLTRDE 72
Query: 67 --------ALRGSS----------------------------ANTQSTYR------KEVI 84
ALRG S T +T R K+V+
Sbjct: 73 TNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVL 132
Query: 85 SLASYIEGPVLVAGSSSYQVSVESLL---------IGHEDWVYSVQWEPPSTAPSDGVSC 135
S+A + +V+GS + + + L H +WV V++ P S+ P
Sbjct: 133 SVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNP------ 186
Query: 136 QQPSSILSASMDKTMMIWQ----PEKTTGI----WMNVVTVGELSHSALGFYGGHWSPDG 187
I+S DK + +W KT I ++N VTV SPDG
Sbjct: 187 ----IIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTV---------------SPDG 227
Query: 188 RSILAHGYGGAFHLW 202
+ G G LW
Sbjct: 228 SLCASGGKDGQAMLW 242
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 86/216 (39%), Gaps = 34/216 (15%)
Query: 103 QVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQ---PEKTT 159
Q+++ L GH WV + P Q P ILSAS DKT+++W+ E
Sbjct: 4 QMTLRGTLKGHNGWVTQIATTP-----------QFPDMILSASRDKTIIMWKLTRDETNY 52
Query: 160 GIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS 219
GI + S + S DG+ L+ + G LW D+ +
Sbjct: 53 GIPQRALRGHSHFVSDVVI-----SSDGQFALSGSWDGTLRLW-----DLTTGTTTRRFV 102
Query: 220 GHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINC 279
GH V+ +++S + ++S S D+T ++ W + + + H ++C
Sbjct: 103 GHTKDVLSVAFSSDNRQIVSGSRDKTIKL---WNTLGVC------KYTVQDESHSEWVSC 153
Query: 280 VTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLNH 315
V N VS +K+ +V+ LKT NH
Sbjct: 154 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT-NH 188
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 85/241 (35%), Gaps = 95/241 (39%)
Query: 25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKL------------ALRGSS 72
LKGH W+ + + +++S+S+DK I +WKL ALRG S
Sbjct: 11 LKGHNGWVTQI-------ATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS 63
Query: 73 ----------------------------ANTQSTYR------KEVISLASYIEGPVLVAG 98
T +T R K+V+S+A + +V+G
Sbjct: 64 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSG 123
Query: 99 SSSYQVSVESLL---------IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT 149
S + + + L H +WV V++ P S+ P I+S DK
Sbjct: 124 SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNP----------IIVSCGWDKL 173
Query: 150 MMIWQ----PEKTTGI----WMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHL 201
+ +W KT I ++N VTV SPDG + G G L
Sbjct: 174 VKVWNLANCKLKTNHIGHTGYLNTVTV---------------SPDGSLCASGGKDGQAML 218
Query: 202 W 202
W
Sbjct: 219 W 219
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 31/196 (15%)
Query: 14 QRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA 73
Q+ G VR+ KGH+ ++ CT A +S+S DK +R+W +A G +
Sbjct: 52 QKFGVPVRS--FKGHSHIVQD-------CTL-TADGAYALSASWDKTLRLWDVA-TGETY 100
Query: 74 NTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL-------LIGHEDWVYSVQWEPPS 126
++ +V S+ + +++GS + V ++ L+GH DWV V+ P
Sbjct: 101 QRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNE 160
Query: 127 TAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD 186
A D V+ I+SA DK + W + + + H++ SPD
Sbjct: 161 KADDDSVT------IISAGNDKXVKAWNLNQFQ------IEADFIGHNS-NINTLTASPD 207
Query: 187 GRSILAHGYGGAFHLW 202
G I + G G LW
Sbjct: 208 GTLIASAGKDGEIXLW 223
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 78/187 (41%), Gaps = 25/187 (13%)
Query: 110 LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNV-VTV 168
L GH WV S+ S QP+ +LSAS DKT++ W K TG V V
Sbjct: 13 LEGHNGWVTSL-----------ATSAGQPNLLLSASRDKTLISW---KLTGDDQKFGVPV 58
Query: 169 GELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDI 228
+ + DG L+ + LW D+ + + GH + V +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW-----DVATGETYQRFVGHKSDVXSV 113
Query: 229 SWSRSSDYLLSVSHDQTTRVFA-PWKNVASLMGENSWHEVAR--PQVHGHDINCVTIIQG 285
+ + ++S S D+T +V+ + +A+L+G N W R P D + VTII
Sbjct: 114 DIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADD-DSVTIISA 172
Query: 286 KGNHRFV 292
GN + V
Sbjct: 173 -GNDKXV 178
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 29/161 (18%)
Query: 53 VSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLL-- 110
+S S D +R+W LA G S + K+V+S+A ++ +V+ S + + + L
Sbjct: 446 LSGSWDGELRLWDLA-AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE 504
Query: 111 ---------IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGI 161
GH DWV V++ P + P +I+SAS DKT+ +W
Sbjct: 505 CKYTISEGGEGHRDWVSCVRFSPNTLQP----------TIVSASWDKTVKVWNLSNCKLR 554
Query: 162 WMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLW 202
G +S A+ SPDG + G G LW
Sbjct: 555 STLAGHTGYVSTVAV-------SPDGSLCASGGKDGVVLLW 588
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 72/166 (43%), Gaps = 20/166 (12%)
Query: 141 ILSASMDKTMMIWQ---PEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGG 197
I+SAS DK++++W+ +K G+ +T HS S DG+ L+ + G
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLT----GHSHF-VEDVVLSSDGQFALSGSWDG 452
Query: 198 AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVAS 257
LW D+ + GH V+ +++S + ++S S D+T +++ +
Sbjct: 453 ELRLW-----DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW-------N 500
Query: 258 LMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVF 303
+GE + + H ++CV VS + +K +V+
Sbjct: 501 TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVW 546
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 106 VESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNV 165
+ES L GH DWV V W P + S + S S D+T +IW + G W
Sbjct: 196 LESTLEGHSDWVRDVAWSP---------TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT 246
Query: 166 VTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWR 203
+ E L + WS G + G LW+
Sbjct: 247 LLKEEKFPDVL--WRASWSLSGNVLALSGGDNKVTLWK 282
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 12/84 (14%)
Query: 2 GGLDNKIHLYRGQRTGK-FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKV 60
GG DN + +++ + +V L+GH+DW+R + +S V + L S SQD+
Sbjct: 176 GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL-----LRSYLASVSQDRT 230
Query: 61 IRIWKLALRGSSANTQSTYRKEVI 84
IW + N Q ++K ++
Sbjct: 231 CIIW------TQDNEQGPWKKTLL 248
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 97/259 (37%), Gaps = 56/259 (21%)
Query: 39 LPVCTSGEAISILLVSSSQDKVIR--------IWKLALRGSSANTQSTYRKEVISLASYI 90
L C+S + I I V K+I +W++ T +++ SY
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT-------ILASCSY- 75
Query: 91 EGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTM 150
+G VL+ + + S ++ H V SVQW P P +L AS D +
Sbjct: 76 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP----------LLLVASSDGKV 125
Query: 151 MIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP-------------DGRSILAHGYGG 197
+ + K G ++ + A+G W+P + R + G
Sbjct: 126 SVVEF-KENGTTSPII----IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 180
Query: 198 AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS---SDYLLSVSHDQTTRVFA---- 250
+W+ D + + GH V D++WS + YL SVS D+T ++
Sbjct: 181 LVKIWK-YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239
Query: 251 --PWKNVASLMGENSWHEV 267
PWK +L+ E + +V
Sbjct: 240 QGPWKK--TLLKEEKFPDV 256
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 106 VESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNV 165
+ES L GH DWV V W P + S + S S D+T +IW + G W
Sbjct: 198 LESTLEGHSDWVRDVAWSP---------TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT 248
Query: 166 VTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWR 203
+ E L + WS G + G LW+
Sbjct: 249 LLKEEKFPDVL--WRASWSLSGNVLALSGGDNKVTLWK 284
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 2 GGLDNKIHLYRGQRTGK-FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKV 60
GG DN + +++ + +V L+GH+DW+R + +S V + L S SQD+
Sbjct: 178 GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL-----LRSYLASVSQDRT 232
Query: 61 IRIWKLALRGSSANTQSTYRKEVISLASY 89
IW + N Q ++K ++ +
Sbjct: 233 CIIW------TQDNEQGPWKKTLLKEEKF 255
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 97/259 (37%), Gaps = 56/259 (21%)
Query: 39 LPVCTSGEAISILLVSSSQDKVIR--------IWKLALRGSSANTQSTYRKEVISLASYI 90
L C+S + I I V K+I +W++ T +++ SY
Sbjct: 26 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT-------ILASCSY- 77
Query: 91 EGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTM 150
+G VL+ + + S ++ H V SVQW P P +L AS D +
Sbjct: 78 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP----------LLLVASSDGKV 127
Query: 151 MIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP-------------DGRSILAHGYGG 197
+ + K G ++ + A+G W+P + R + G
Sbjct: 128 SVVEF-KENGTTSPII----IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 182
Query: 198 AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS---SDYLLSVSHDQTTRVF----- 249
+W+ D + + GH V D++WS + YL SVS D+T ++
Sbjct: 183 LVKIWK-YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241
Query: 250 -APWKNVASLMGENSWHEV 267
PWK +L+ E + +V
Sbjct: 242 QGPWKK--TLLKEEKFPDV 258
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 14/80 (17%)
Query: 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFS----LPVCTSGEAISILLVSSSQ 57
GG DN I L++ + G++ +L+ H+DW+R + ++ LP T + S SQ
Sbjct: 185 GGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTST--------IASCSQ 236
Query: 58 DKVIRIWKLALRGSSANTQS 77
D + IW +S+NT S
Sbjct: 237 DGRVFIW--TCDDASSNTWS 254
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 107 ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTT 159
E L H DWV V W P P+ S+I S S D + IW + +
Sbjct: 205 EQKLEAHSDWVRDVAWAPSIGLPT--------STIASCSQDGRVFIWTCDDAS 249
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 106 VESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNV 165
+ES L GH DWV V W P + S + S S D+T +IW + G W
Sbjct: 196 LESTLEGHSDWVRDVAWSP---------TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT 246
Query: 166 VTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWR 203
+ E L + WS G + G LW+
Sbjct: 247 LLKEEKFPDVL--WRASWSLSGNVLALSGGDNKVTLWK 282
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 2 GGLDNKIHLYRGQRTGK-FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKV 60
GG DN + +++ + +V L+GH+DW+R + +S V + L S SQD+
Sbjct: 176 GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL-----LRSYLASVSQDRT 230
Query: 61 IRIWKLALRGSSANTQSTYRKEVISLASY 89
IW + N Q ++K ++ +
Sbjct: 231 CIIW------TQDNEQGPWKKTLLKEEKF 253
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 97/259 (37%), Gaps = 56/259 (21%)
Query: 39 LPVCTSGEAISILLVSSSQDKVIR--------IWKLALRGSSANTQSTYRKEVISLASYI 90
L C+S + I I V K+I +W++ T +++ SY
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT-------ILASCSY- 75
Query: 91 EGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTM 150
+G VL+ + + S ++ H V SVQW P P +L AS D +
Sbjct: 76 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP----------LLLVASSDGKV 125
Query: 151 MIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP-------------DGRSILAHGYGG 197
+ + K G ++ + A+G W+P + R + G
Sbjct: 126 SVVEF-KENGTTSPII----IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 180
Query: 198 AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS---SDYLLSVSHDQTTRVF----- 249
+W+ D + + GH V D++WS + YL SVS D+T ++
Sbjct: 181 LVKIWK-YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239
Query: 250 -APWKNVASLMGENSWHEV 267
PWK +L+ E + +V
Sbjct: 240 QGPWKK--TLLKEEKFPDV 256
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 68/182 (37%), Gaps = 49/182 (26%)
Query: 25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
L+GH+DW+ S+ + + S +L+S S+DK + IWKL Y +E
Sbjct: 17 LEGHSDWVTSIVAGFSQKENED--SPVLISGSRDKTVMIWKL------------YEEE-- 60
Query: 85 SLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSA 144
+ Y L GH +V SD Q+ +S+
Sbjct: 61 --------------QNGYFGIPHKALTGHNHFV------------SDLALSQENCFAISS 94
Query: 145 SMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRN 204
S DKT+ +W T V E+ Y +SPD R IL+ G LW
Sbjct: 95 SWDKTLRLWDLRTGTTYKRFVGHQSEV-------YSVAFSPDNRQILSAGAEREIKLWNI 147
Query: 205 VG 206
+G
Sbjct: 148 LG 149
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 103 QVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQ 154
QV +L GH DWV S+ A + ++S S DKT+MIW+
Sbjct: 10 QVVKRGILEGHSDWVTSI------VAGFSQKENEDSPVLISGSRDKTVMIWK 55
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 106 VESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNV 165
+ES L GH DWV V W P + S + S S D+T +IW + G W
Sbjct: 196 LESTLEGHSDWVRDVAWSP---------TVLLRSYMASVSQDRTCIIWTQDNEQGPWKKT 246
Query: 166 VTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWR 203
+ E L + WS G + G LW+
Sbjct: 247 LLKEEKFPDVL--WRASWSLSGNVLALSGGDNKVTLWK 282
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 2 GGLDNKIHLYRGQRTGK-FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKV 60
GG DN + +++ + +V L+GH+DW+R + +S V + + S SQD+
Sbjct: 176 GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL-----LRSYMASVSQDRT 230
Query: 61 IRIWKLALRGSSANTQSTYRKEVISLASY 89
IW + N Q ++K ++ +
Sbjct: 231 CIIW------TQDNEQGPWKKTLLKEEKF 253
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 37/98 (37%), Gaps = 11/98 (11%)
Query: 106 VESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNV 165
+ES L GH DWV V W P + S S S D+T +IW + G W
Sbjct: 196 LESTLEGHSDWVRDVAWSP---------TVLLRSYXASVSQDRTCIIWTQDNEQGPWKKT 246
Query: 166 VTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWR 203
+ E L + WS G + G LW+
Sbjct: 247 LLKEEKFPDVL--WRASWSLSGNVLALSGGDNKVTLWK 282
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 2 GGLDNKIHLYRGQRTGK-FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKV 60
GG DN + +++ + +V L+GH+DW+R + +S V S+ SQD+
Sbjct: 176 GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASV-----SQDRT 230
Query: 61 IRIWKLALRGSSANTQSTYRKEVISLASY 89
IW + N Q ++K ++ +
Sbjct: 231 CIIW------TQDNEQGPWKKTLLKEEKF 253
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 25/108 (23%)
Query: 183 WSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS-GHFAAVMDISWSRSSDYLLSVS 241
W+P G + + G +W G + D+W + V S GH V ++WS +YL S S
Sbjct: 24 WNPAGTLLASCGGDRRIRIW---GTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS 80
Query: 242 HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNH 289
D TT + WK + D CVT ++G N
Sbjct: 81 FDATTCI---WKK------------------NQDDFECVTTLEGHENE 107
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 73/197 (37%), Gaps = 31/197 (15%)
Query: 112 GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGEL 171
GH+ V V W P + + SAS D T IW+ + VT E
Sbjct: 59 GHQRTVRKVAWSPCG------------NYLASASFDATTCIWKKNQDD---FECVTTLEG 103
Query: 172 SHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDI-DNWQPQKVPSGHFAAVMDISW 230
+ + W+P G + + +W VD D ++ V + H V + W
Sbjct: 104 HENEVKSVA--WAPSGNLLATCSRDKSVWVWE---VDEEDEYECVSVLNSHTQDVKHVVW 158
Query: 231 SRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHR 290
S + L S S+D T +++ E+ W V + GH+ ++ R
Sbjct: 159 HPSQELLASASYDDTVKLYRE--------EEDDW--VCCATLEGHESTVWSLAFDPSGQR 208
Query: 291 FVSGADEKVARVFEAPL 307
S +D++ R++ L
Sbjct: 209 LASCSDDRTVRIWRQYL 225
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 107/307 (34%), Gaps = 61/307 (19%)
Query: 3 GLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIR 62
G D +I ++ + ++ +GH +R + +S L S+S D
Sbjct: 35 GGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWS--------PCGNYLASASFDATTC 86
Query: 63 IWKLALRG-SSANTQSTYRKEVISLASYIEGPVLVAGSSS-----YQVSVE------SLL 110
IWK T + EV S+A G +L S ++V E S+L
Sbjct: 87 IWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL 146
Query: 111 IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGE 170
H V V W P + SAS D T+ +++ E+ + + E
Sbjct: 147 NSHTQDVKHVVWHPSQEL------------LASASYDDTVKLYREEEDDWVCCATLEGHE 194
Query: 171 LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNV------GVDID----NWQPQKVPSG 220
+ +L F P G+ + + +WR GV +W+ SG
Sbjct: 195 STVWSLAF-----DPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG 249
Query: 221 -HFAAVMDISWSRSSDYLLSVSHDQTTRVFA------PWKNVASLMGENSWHEVARPQVH 273
H + DI+W + + L + D RVF P + SL Q H
Sbjct: 250 FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAH-------LHQAH 302
Query: 274 GHDINCV 280
D+NCV
Sbjct: 303 SQDVNCV 309
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 71/194 (36%), Gaps = 61/194 (31%)
Query: 5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIW 64
D+ + LYR + +V L+GH + SL F SG+ L S S D+ +RIW
Sbjct: 171 DDTVKLYR-EEEDDWVCCATLEGHESTVWSLAFD----PSGQR----LASCSDDRTVRIW 221
Query: 65 KLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQW-- 122
+ L G+ E V +GS + +L H +Y + W
Sbjct: 222 RQYLPGN-------------------EQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ 262
Query: 123 ------------------EPPSTAPSDGVSCQQPSSILSA------SMDKTMMIWQPEKT 158
E P++ P QQP+ L+A S D + W P K
Sbjct: 263 LTGALATACGDDAIRVFQEDPNSDP------QQPTFSLTAHLHQAHSQDVNCVAWNP-KE 315
Query: 159 TGIWMNVVTVGELS 172
G+ + GE++
Sbjct: 316 PGLLASCSDDGEVA 329
>pdb|2PFY|A Chain A, Crystal Structure Of Dctp7, A Bordetella Pertussis
Extracytoplasmic Solute Receptor Binding Pyroglutamic
Acid
pdb|2PFY|B Chain B, Crystal Structure Of Dctp7, A Bordetella Pertussis
Extracytoplasmic Solute Receptor Binding Pyroglutamic
Acid
pdb|2PFY|C Chain C, Crystal Structure Of Dctp7, A Bordetella Pertussis
Extracytoplasmic Solute Receptor Binding Pyroglutamic
Acid
pdb|2PFY|D Chain D, Crystal Structure Of Dctp7, A Bordetella Pertussis
Extracytoplasmic Solute Receptor Binding Pyroglutamic
Acid
Length = 301
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 15/109 (13%)
Query: 149 TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRN---- 204
+ ++ +PE G+ VV +GE+ SALG + D LA + + LW+
Sbjct: 43 STLLKRPEVKRGVQQGVVQIGEVLVSALGNEDPLFEIDSVPFLASSFNESEKLWKATRPL 102
Query: 205 VGVDIDN----------WQPQKVPSGH-FAAVMDISWSRSSDYLLSVSH 242
+ +D W PQ + + AA+ D+ +R Y S SH
Sbjct: 103 LAQRLDKQGIVLVYGSPWPPQGIYTKKPVAALADLKGTRFRAYSASTSH 151
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 82/237 (34%), Gaps = 72/237 (30%)
Query: 104 VSVESLLIGHEDWVYSVQW-EPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIW 162
V+ E L GH WV S+ + P TA + ++S S DKT++ W P
Sbjct: 3 VAYEGQLTGHRGWVTSLACPQTPETA----------TKVVSTSRDKTLLSWGPNPD---- 48
Query: 163 MNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHF 222
HS+ YG P + GH
Sbjct: 49 ---------RHSSECSYG--------------------------------LPDRRLEGHS 67
Query: 223 AAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTI 282
A V D++ S + ++ +S S D + R++ N + + + GH + +++
Sbjct: 68 AFVSDVALSNNGNFAVSASWDHSLRLW------------NLQNGQCQYKFLGHTKDVLSV 115
Query: 283 IQGKGNHRFVSGADEKVARVFEAPLSFLKTLNHATFQE----SSFHEDLQADVQILG 335
N + VSG + RV+ + TL+ + F L A V + G
Sbjct: 116 AFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSG 172
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 11/65 (16%)
Query: 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVI 61
GG DN + ++ TG+ V +LKGHT+++ S+ S L SS +D V
Sbjct: 172 GGWDNLVKVW-DLATGRLVT--DLKGHTNYVTSVTVS--------PDGSLCASSDKDGVA 220
Query: 62 RIWKL 66
R+W L
Sbjct: 221 RLWDL 225
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVI 61
GG DN + ++ + G+ + HTDW+ + FS + + ++VS D ++
Sbjct: 127 GGRDNALRVWNVK--GECMHTLSRGAHTDWVSCVRFSPSL------DAPVIVSGGWDNLV 178
Query: 62 RIWKLA 67
++W LA
Sbjct: 179 KVWDLA 184
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 25/131 (19%)
Query: 113 HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELS 172
H V +VQW P T S+S DKT+ +W N + ++
Sbjct: 98 HRYSVETVQWYPHDTG-----------MFTSSSFDKTLKVWD--------TNTLQTADVF 138
Query: 173 HSALGFYGGHWSP--DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISW 230
+ Y H SP ++A G G + D+ + + GH ++ +SW
Sbjct: 139 NFEETVYSHHMSPVSTKHCLVAVGTRGP----KVQLCDLKSGSCSHILQGHRQEILAVSW 194
Query: 231 SRSSDYLLSVS 241
S DY+L+ +
Sbjct: 195 SPRYDYILATA 205
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Query: 216 KVPSGHFAAVMDISW-SRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHG 274
+ PSGH A V+ +S S +++ +S S D T R+ W + ++H H
Sbjct: 199 EFPSGHTADVLSLSINSLNANMFISGSCDTTVRL---WDLRITSRAVRTYHG------HE 249
Query: 275 HDINCVTIIQGKGNHRFVSGADEKVARVFE 304
DIN V RF +G+D+ R+F+
Sbjct: 250 GDINSVKFF--PDGQRFGTGSDDGTCRLFD 277
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 31/69 (44%)
Query: 51 LLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLL 110
+ +S S D +R+W L + + T + ++ S+ + +G GS + +
Sbjct: 220 MFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR 279
Query: 111 IGHEDWVYS 119
GH+ VY+
Sbjct: 280 TGHQLQVYN 288
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 183 WSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH 242
WS DG SI+ G LW G ++ V + H A ++ + W++ +++S+
Sbjct: 116 WSHDGNSIVTGVENGELRLWNKTGALLN------VLNFHRAPIVSVKWNKDGTHIISMDV 169
Query: 243 DQTT 246
+ T
Sbjct: 170 ENVT 173
>pdb|1VRG|A Chain A, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|B Chain B, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|C Chain C, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|D Chain D, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|E Chain E, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|F Chain F, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
Length = 527
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 234 SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVS 293
+D+++ V DQT R F NV + + E+++ + G ++ Q GN F++
Sbjct: 192 TDFIVXV--DQTARXFITGPNVIKAV---TGEEISQEDLGGAXVHN----QKSGNAHFLA 242
Query: 294 GADEKVARVFEAPLSFLKTLN 314
DEK + LS+L + N
Sbjct: 243 DNDEKAXSLVRTLLSYLPSNN 263
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 28/158 (17%)
Query: 110 LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQ--PEKTTGIWMNVVT 167
L G + SV ++P +P I+S S D T+ I++ P K T
Sbjct: 143 LTGQARAMNSVDFKP-----------SRPFRIISGSDDNTVAIFEGPPFKFKS------T 185
Query: 168 VGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNV-GVDIDNWQPQKVPS-GHFAAV 225
GE H+ + ++PDG + G G L+ V G ++ + + H +V
Sbjct: 186 FGE--HTKF-VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV 242
Query: 226 MDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENS 263
++WS + S S D+T +++ NVA+L E +
Sbjct: 243 FGLTWSPDGTKIASASADKTIKIW----NVATLKVEKT 276
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Query: 44 SGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQ 103
+G+ + +L+ Q + ++ + A R S N S E + IE ++ GS
Sbjct: 505 AGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN 564
Query: 104 VSVESL---------LIGHEDWVYSVQWEPPSTAPSDG 132
+ + S+ L H+D V ++ WE PST S G
Sbjct: 565 IFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSG 602
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 269 RPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA 305
R + GH + +T +Q + N+ ++GAD+K+ RV+++
Sbjct: 114 RTTLRGHMTSVITCLQFEDNY-VITGADDKMIRVYDS 149
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 21/117 (17%)
Query: 52 LVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQV------- 104
++ S D IR++ G + + S+A + P +++GS V
Sbjct: 70 IIVGSDDFRIRVFNYN-TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 105 --SVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTT 159
++E GHE +V V + P + PS+ S +D+T+ +W ++T
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNP-----------KDPSTFASGCLDRTVKVWSLGQST 174
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAH-GYGGAF 199
+ + S DKT+ +W + + + WSP +ILA G
Sbjct: 295 LATGSADKTVALWDLRNLK------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 348
Query: 200 HLWRNVGV-------DIDNWQPQK--VPSGHFAAVMDISWSRSSDYLL-SVSHDQTTRVF 249
H+W + D ++ P+ + GH A + D SW+ + +++ SVS D +V+
Sbjct: 349 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 408
Query: 250 APWKNV 255
+NV
Sbjct: 409 QMAENV 414
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 21/117 (17%)
Query: 52 LVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQV------- 104
++ S D IR++ G + + S+A + P +++GS V
Sbjct: 70 IIVGSDDFRIRVFNYN-TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 105 --SVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTT 159
++E GHE +V V + P + PS+ S +D+T+ +W ++T
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNP-----------KDPSTFASGCLDRTVKVWSLGQST 174
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 12/48 (25%)
Query: 112 GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTT 159
GH WV+ V + P DG SS L+AS D+T+ +W+ +K
Sbjct: 880 GHLSWVHGVMFSP------DG------SSFLTASDDQTIRVWETKKVC 915
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAH-GYGGAF 199
+ + S DKT+ +W + + + WSP +ILA G
Sbjct: 293 LATGSADKTVALWDLRNLK------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 346
Query: 200 HLWRNVGV-------DIDNWQPQK--VPSGHFAAVMDISWSRSSDYLL-SVSHDQTTRVF 249
H+W + D ++ P+ + GH A + D SW+ + +++ SVS D +V+
Sbjct: 347 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406
Query: 250 APWKNV 255
+NV
Sbjct: 407 QMAENV 412
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 12/48 (25%)
Query: 112 GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTT 159
GH WV+ V + P DG SS L+AS D+T+ +W+ +K
Sbjct: 887 GHLSWVHGVMFSP------DG------SSFLTASDDQTIRVWETKKVC 922
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAH-GYGGAF 199
+ + S DKT+ +W + + + WSP +ILA G
Sbjct: 297 LATGSADKTVALWDLRNLK------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 350
Query: 200 HLWRNVGV-------DIDNWQPQK--VPSGHFAAVMDISWSRSSDYLL-SVSHDQTTRVF 249
H+W + D ++ P+ + GH A + D SW+ + +++ SVS D +V+
Sbjct: 351 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 410
Query: 250 APWKNV 255
+NV
Sbjct: 411 QMAENV 416
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 21/111 (18%)
Query: 52 LVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQV------- 104
++ S D IR++ G + + S+A + P +++GS V
Sbjct: 70 IIVGSDDFRIRVFNYNT-GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 105 --SVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW 153
++E GHE +V V + P + PS+ S +D+T+ +W
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNP-----------KDPSTFASGCLDRTVKVW 168
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 21/111 (18%)
Query: 52 LVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQV------- 104
++ S D IR++ G + + S+A + P +++GS V
Sbjct: 70 IIVGSDDFRIRVFNYNT-GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 105 --SVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW 153
++E GHE +V V + P + PS+ S +D+T+ +W
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNP-----------KDPSTFASGCLDRTVKVW 168
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAH-GYGGAF 199
+ + S DKT+ +W + + + HWSP +ILA G
Sbjct: 291 LATGSADKTVALWDLRNLK------LKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 200 HLW-------RNVGVDIDNWQPQK--VPSGHFAAVMDISWSRSSDYLL-SVSHDQTTRVF 249
++W D ++ P+ + GH A + D SW+ + +++ SVS D +++
Sbjct: 345 NVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
Query: 250 APWKNV 255
+N+
Sbjct: 405 QXAENI 410
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 168 VGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD 227
V LS + G W+PDGR + + G ++W + + W P + + H AV
Sbjct: 223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE-GGWVPLQTFTQHQGAVKA 281
Query: 228 ISWSRSSDYLLSVSHDQTTRVFAPWKNVAS 257
++W +L+ + R W NV S
Sbjct: 282 VAWCPWQSNVLATGGGTSDRHIRIW-NVCS 310
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 168 VGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD 227
V LS + G W+PDGR + + G ++W + + W P + + H AV
Sbjct: 234 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE-GGWVPLQTFTQHQGAVKA 292
Query: 228 ISWSRSSDYLLSVSHDQTTRVFAPWKNVAS 257
++W +L+ + R W NV S
Sbjct: 293 VAWCPWQSNVLATGGGTSDRHIRIW-NVCS 321
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Query: 44 SGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQ 103
+G+ +L+ Q + ++ + A R S N S E + IE ++ GS
Sbjct: 505 AGDVXGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN 564
Query: 104 VSVESL---------LIGHEDWVYSVQWEPPSTAPSDG 132
+ + S+ L H+D V ++ WE PST S G
Sbjct: 565 IFIYSVKRPXKIIKALNAHKDGVNNLLWETPSTLVSSG 602
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 168 VGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD 227
V LS + G W+PDGR + + G ++W + + W P + + H AV
Sbjct: 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE-GGWVPLQTFTQHQGAVKA 201
Query: 228 ISWSRSSDYLLSVSHDQTTRVFAPWKNVAS 257
++W +L+ + R W NV S
Sbjct: 202 VAWCPWQSNVLATGGGTSDRHIRIW-NVCS 230
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAH-GYGGAF 199
+ + S DKT+ +W + + + HWSP +ILA G
Sbjct: 291 LATGSADKTVALWDLRNLK------LKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 200 HLW-------RNVGVDIDNWQPQK--VPSGHFAAVMDISWSRSSDYLL-SVSHDQTTRVF 249
++W D ++ P+ + GH A + D SW+ + +++ SVS D +++
Sbjct: 345 NVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
Query: 250 APWKNV 255
+N+
Sbjct: 405 QMAENI 410
>pdb|1GWC|A Chain A, The Structure Of A Tau Class Glutathione S-Transferase
From Wheat, Active In Herbicide Detoxification
pdb|1GWC|B Chain B, The Structure Of A Tau Class Glutathione S-Transferase
From Wheat, Active In Herbicide Detoxification
pdb|1GWC|C Chain C, The Structure Of A Tau Class Glutathione S-Transferase
From Wheat, Active In Herbicide Detoxification
Length = 230
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 39 LPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEG 92
LP AI+ V+ DK++ W+ LRG + +S +K+ + +EG
Sbjct: 88 LPADPYERAIARFWVAYVDDKLVAPWRQWLRGKTEEEKSEGKKQAFAAVGVLEG 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,114,716
Number of Sequences: 62578
Number of extensions: 459231
Number of successful extensions: 1853
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 1439
Number of HSP's gapped (non-prelim): 321
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)