Query 048511
Match_columns 351
No_of_seqs 501 out of 1283
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 10:09:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048511.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048511hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 3.4E-45 7.4E-50 292.8 22.0 274 1-321 132-455 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 8.6E-45 1.9E-49 293.8 21.2 258 1-304 192-458 (459)
3 KOG0271 Notchless-like WD40 re 100.0 2.9E-41 6.3E-46 270.4 22.5 258 20-317 106-409 (480)
4 KOG0315 G-protein beta subunit 100.0 7E-39 1.5E-43 242.9 26.6 276 1-317 15-300 (311)
5 KOG0286 G-protein beta subunit 100.0 5E-39 1.1E-43 249.1 26.2 254 19-318 45-316 (343)
6 KOG0272 U4/U6 small nuclear ri 100.0 4.8E-40 1E-44 266.4 17.5 253 26-322 172-435 (459)
7 KOG0279 G protein beta subunit 100.0 4.9E-38 1.1E-42 242.1 26.6 269 1-306 33-313 (315)
8 KOG0295 WD40 repeat-containing 100.0 1.2E-38 2.7E-43 253.7 19.5 257 2-305 126-405 (406)
9 KOG0263 Transcription initiati 100.0 3.4E-38 7.4E-43 274.2 18.8 206 22-306 444-649 (707)
10 KOG0286 G-protein beta subunit 100.0 7E-36 1.5E-40 231.7 26.2 259 1-304 72-343 (343)
11 KOG0645 WD40 repeat protein [G 100.0 1.1E-35 2.3E-40 228.3 25.1 260 19-306 4-311 (312)
12 KOG0284 Polyadenylation factor 100.0 1.4E-37 3.1E-42 251.1 15.4 259 1-306 113-380 (464)
13 KOG0279 G protein beta subunit 100.0 3.9E-35 8.5E-40 226.1 26.2 255 19-317 5-274 (315)
14 KOG0273 Beta-transducin family 100.0 2.2E-35 4.7E-40 242.6 23.7 255 1-306 252-523 (524)
15 KOG1063 RNA polymerase II elon 100.0 1.8E-35 3.8E-40 253.5 22.7 311 1-349 164-475 (764)
16 KOG0295 WD40 repeat-containing 100.0 4.6E-35 9.9E-40 233.4 20.9 257 20-321 99-380 (406)
17 KOG0313 Microtubule binding pr 100.0 9.2E-35 2E-39 232.9 22.4 262 1-306 120-418 (423)
18 KOG0319 WD40-repeat-containing 100.0 8.9E-35 1.9E-39 250.9 22.7 283 1-319 122-549 (775)
19 KOG0281 Beta-TrCP (transducin 100.0 2.8E-35 6.2E-40 233.6 16.4 255 1-306 212-477 (499)
20 KOG0315 G-protein beta subunit 100.0 1.5E-33 3.2E-38 214.1 24.6 242 4-283 59-309 (311)
21 KOG0273 Beta-transducin family 100.0 1E-33 2.3E-38 232.7 23.7 271 1-318 196-495 (524)
22 KOG0282 mRNA splicing factor [ 100.0 1.8E-34 3.9E-39 237.9 19.1 261 1-304 232-503 (503)
23 KOG0285 Pleiotropic regulator 100.0 8.9E-34 1.9E-38 225.8 21.8 250 19-315 141-399 (460)
24 KOG0296 Angio-associated migra 100.0 2E-33 4.3E-38 224.2 23.8 261 1-306 81-398 (399)
25 KOG0319 WD40-repeat-containing 100.0 1.1E-33 2.5E-38 244.1 24.1 255 2-304 342-617 (775)
26 KOG0284 Polyadenylation factor 100.0 1.3E-34 2.8E-39 234.1 16.4 234 29-306 96-337 (464)
27 KOG0277 Peroxisomal targeting 100.0 2.3E-34 5E-39 219.1 15.6 229 1-305 78-308 (311)
28 KOG0293 WD40 repeat-containing 100.0 2.4E-33 5.1E-38 227.2 22.0 262 1-306 241-513 (519)
29 KOG0263 Transcription initiati 100.0 1.3E-33 2.8E-38 245.8 20.0 251 20-319 369-621 (707)
30 KOG0276 Vesicle coat complex C 100.0 7.1E-33 1.5E-37 235.2 23.8 254 2-302 31-295 (794)
31 KOG0285 Pleiotropic regulator 100.0 1.7E-32 3.6E-37 218.6 23.8 259 1-306 168-439 (460)
32 KOG0292 Vesicle coat complex C 100.0 1.4E-33 3.1E-38 248.0 19.4 238 2-314 27-289 (1202)
33 KOG0316 Conserved WD40 repeat- 100.0 7.7E-33 1.7E-37 208.6 20.4 235 1-319 34-271 (307)
34 KOG0318 WD40 repeat stress pro 100.0 4.4E-32 9.6E-37 226.0 26.8 267 1-306 207-560 (603)
35 KOG0265 U5 snRNP-specific prot 100.0 7.3E-33 1.6E-37 215.7 19.5 264 20-323 38-314 (338)
36 KOG0291 WD40-repeat-containing 100.0 3.2E-32 6.9E-37 235.8 24.0 239 3-322 327-567 (893)
37 cd00200 WD40 WD40 domain, foun 100.0 3.1E-31 6.7E-36 223.2 29.7 256 1-304 26-289 (289)
38 KOG0266 WD40 repeat-containing 100.0 1.6E-31 3.5E-36 237.2 28.7 253 22-317 151-421 (456)
39 KOG0266 WD40 repeat-containing 100.0 6.1E-32 1.3E-36 239.9 25.9 262 2-306 177-454 (456)
40 KOG0265 U5 snRNP-specific prot 100.0 3E-31 6.5E-36 206.7 23.9 260 1-303 64-335 (338)
41 PTZ00420 coronin; Provisional 100.0 1.7E-30 3.7E-35 230.9 29.5 240 2-314 50-301 (568)
42 KOG0291 WD40-repeat-containing 100.0 9.3E-31 2E-35 226.8 26.7 280 1-315 162-519 (893)
43 KOG0268 Sof1-like rRNA process 100.0 4.6E-32 1E-36 216.3 17.1 267 1-317 84-357 (433)
44 KOG1332 Vesicle coat complex C 100.0 2E-31 4.2E-36 202.1 19.6 241 1-306 28-286 (299)
45 KOG0316 Conserved WD40 repeat- 100.0 2.6E-31 5.6E-36 200.4 20.1 223 20-323 8-231 (307)
46 KOG0276 Vesicle coat complex C 100.0 1.3E-31 2.8E-36 227.6 20.6 240 23-306 7-257 (794)
47 KOG0277 Peroxisomal targeting 100.0 2.2E-31 4.7E-36 202.9 19.4 244 4-322 36-283 (311)
48 KOG0318 WD40 repeat stress pro 100.0 1E-30 2.3E-35 217.9 24.9 267 5-307 38-351 (603)
49 KOG0264 Nucleosome remodeling 100.0 1.3E-30 2.7E-35 213.9 20.9 254 1-310 142-408 (422)
50 PLN00181 protein SPA1-RELATED; 100.0 1.3E-29 2.7E-34 241.1 30.8 263 5-306 457-738 (793)
51 KOG0283 WD40 repeat-containing 100.0 9E-31 2E-35 229.9 20.7 264 22-323 259-550 (712)
52 KOG0643 Translation initiation 100.0 8.1E-31 1.7E-35 201.2 17.6 239 1-309 27-320 (327)
53 PTZ00421 coronin; Provisional 100.0 1.3E-29 2.9E-34 224.3 28.0 218 24-311 70-296 (493)
54 cd00200 WD40 WD40 domain, foun 100.0 2.3E-29 5E-34 211.8 27.9 248 23-315 3-259 (289)
55 KOG0282 mRNA splicing factor [ 100.0 2.5E-31 5.4E-36 219.4 14.9 235 20-322 205-479 (503)
56 KOG1407 WD40 repeat protein [F 100.0 1.2E-29 2.7E-34 194.1 22.5 258 1-305 37-310 (313)
57 KOG0278 Serine/threonine kinas 100.0 5.8E-31 1.3E-35 200.3 14.8 257 2-310 35-302 (334)
58 PLN00181 protein SPA1-RELATED; 100.0 1.7E-29 3.6E-34 240.2 28.4 238 1-305 550-792 (793)
59 KOG0274 Cdc4 and related F-box 100.0 6.2E-30 1.3E-34 226.7 23.3 228 1-316 223-452 (537)
60 KOG0281 Beta-TrCP (transducin 100.0 2.4E-31 5.2E-36 211.4 12.7 206 28-319 196-402 (499)
61 KOG0772 Uncharacterized conser 100.0 5.7E-30 1.2E-34 213.1 20.1 259 21-303 159-484 (641)
62 KOG0275 Conserved WD40 repeat- 100.0 5.8E-31 1.3E-35 207.6 12.7 260 1-304 230-507 (508)
63 KOG0305 Anaphase promoting com 100.0 1E-28 2.2E-33 211.5 26.5 253 5-307 196-462 (484)
64 KOG0306 WD40-repeat-containing 100.0 7.5E-29 1.6E-33 214.9 25.6 273 4-317 342-634 (888)
65 KOG0300 WD40 repeat-containing 100.0 1.1E-29 2.5E-34 199.7 18.3 259 1-314 165-436 (481)
66 KOG0306 WD40-repeat-containing 100.0 1.5E-28 3.2E-33 213.1 25.5 254 4-307 392-665 (888)
67 KOG0308 Conserved WD40 repeat- 100.0 4.6E-30 9.9E-35 219.1 15.2 238 1-307 42-286 (735)
68 KOG0313 Microtubule binding pr 100.0 1.4E-28 2.9E-33 197.6 21.9 251 28-317 104-389 (423)
69 KOG1407 WD40 repeat protein [F 100.0 8.3E-29 1.8E-33 189.6 18.0 219 23-313 14-269 (313)
70 KOG0292 Vesicle coat complex C 100.0 1.8E-28 3.8E-33 216.2 22.0 232 1-306 68-321 (1202)
71 KOG0645 WD40 repeat protein [G 100.0 9E-28 2E-32 184.9 22.5 198 79-304 13-223 (312)
72 KOG0275 Conserved WD40 repeat- 100.0 2.1E-29 4.5E-34 198.8 13.6 237 27-323 211-485 (508)
73 KOG1446 Histone H3 (Lys4) meth 100.0 4.3E-27 9.3E-32 185.1 25.8 255 20-316 5-273 (311)
74 KOG0289 mRNA splicing factor [ 100.0 7.4E-28 1.6E-32 196.6 22.1 259 1-305 236-505 (506)
75 KOG1408 WD40 repeat protein [F 100.0 8.3E-28 1.8E-32 207.6 23.5 278 3-307 343-714 (1080)
76 KOG0296 Angio-associated migra 100.0 5.7E-28 1.2E-32 193.2 20.7 252 21-319 56-370 (399)
77 KOG0640 mRNA cleavage stimulat 100.0 1.5E-28 3.3E-33 192.7 17.0 265 1-306 129-426 (430)
78 KOG0643 Translation initiation 100.0 1E-27 2.3E-32 184.2 21.2 220 24-317 5-232 (327)
79 KOG0640 mRNA cleavage stimulat 100.0 1.1E-28 2.5E-33 193.4 16.2 239 22-316 105-346 (430)
80 KOG0294 WD40 repeat-containing 100.0 4.6E-27 1E-31 184.7 24.2 259 1-308 6-283 (362)
81 KOG2445 Nuclear pore complex c 100.0 4.9E-27 1.1E-31 184.0 24.2 258 1-306 30-318 (361)
82 KOG0283 WD40 repeat-containing 100.0 4.4E-28 9.6E-33 213.1 20.0 209 20-306 360-576 (712)
83 KOG0274 Cdc4 and related F-box 100.0 7.9E-28 1.7E-32 213.3 21.6 223 1-313 266-490 (537)
84 KOG0310 Conserved WD40 repeat- 100.0 2.7E-27 5.9E-32 196.0 22.8 241 29-313 26-276 (487)
85 KOG0647 mRNA export protein (c 100.0 1.5E-27 3.4E-32 186.3 19.9 222 1-294 45-311 (347)
86 KOG0293 WD40 repeat-containing 100.0 1.6E-27 3.4E-32 193.6 19.9 255 20-318 215-483 (519)
87 KOG0310 Conserved WD40 repeat- 100.0 1.4E-27 3.1E-32 197.6 19.8 224 1-305 85-308 (487)
88 KOG0641 WD40 repeat protein [G 100.0 9.5E-26 2.1E-30 169.7 27.0 248 23-306 83-349 (350)
89 KOG0301 Phospholipase A2-activ 100.0 5.3E-27 1.1E-31 201.9 22.6 252 1-306 30-288 (745)
90 KOG0288 WD40 repeat protein Ti 100.0 5.3E-28 1.2E-32 196.2 14.4 257 1-304 192-459 (459)
91 KOG0269 WD40 repeat-containing 100.0 1.2E-27 2.7E-32 208.1 13.8 231 1-304 105-338 (839)
92 KOG1332 Vesicle coat complex C 100.0 2.1E-27 4.5E-32 180.3 13.1 217 25-306 7-241 (299)
93 KOG0308 Conserved WD40 repeat- 100.0 1.6E-27 3.5E-32 203.6 14.0 215 47-319 35-257 (735)
94 KOG0300 WD40 repeat-containing 100.0 5.3E-27 1.1E-31 184.8 15.8 235 8-315 128-397 (481)
95 KOG0973 Histone transcription 100.0 3.3E-26 7.2E-31 206.4 22.7 252 1-308 30-357 (942)
96 PTZ00421 coronin; Provisional 99.9 1.2E-25 2.5E-30 199.3 25.7 230 1-311 93-336 (493)
97 KOG0288 WD40 repeat protein Ti 99.9 1.7E-27 3.8E-32 193.2 12.8 252 22-317 168-429 (459)
98 KOG2096 WD40 repeat protein [G 99.9 5.4E-26 1.2E-30 179.0 20.2 265 22-317 79-372 (420)
99 KOG0641 WD40 repeat protein [G 99.9 1.1E-24 2.4E-29 164.0 25.6 256 17-314 21-311 (350)
100 KOG0264 Nucleosome remodeling 99.9 2.4E-26 5.1E-31 188.9 17.9 225 26-306 121-347 (422)
101 KOG0299 U3 snoRNP-associated p 99.9 1.2E-25 2.7E-30 184.9 21.2 250 22-307 135-411 (479)
102 KOG1446 Histone H3 (Lys4) meth 99.9 4.3E-25 9.2E-30 173.9 22.4 222 4-306 78-303 (311)
103 KOG0646 WD40 repeat protein [G 99.9 6.5E-25 1.4E-29 181.0 22.8 276 6-314 18-316 (476)
104 KOG1539 WD repeat protein [Gen 99.9 2.3E-25 5.1E-30 195.5 21.3 284 1-313 219-614 (910)
105 KOG0301 Phospholipase A2-activ 99.9 3.8E-25 8.3E-30 190.5 21.4 235 19-306 4-249 (745)
106 KOG0639 Transducin-like enhanc 99.9 1.1E-25 2.4E-30 187.3 16.5 255 4-305 438-703 (705)
107 KOG0270 WD40 repeat-containing 99.9 1.9E-25 4E-30 183.1 17.3 233 1-306 197-449 (463)
108 KOG1063 RNA polymerase II elon 99.9 3.2E-24 6.9E-29 184.9 25.3 275 1-308 211-650 (764)
109 KOG0269 WD40 repeat-containing 99.9 5E-26 1.1E-30 198.2 14.4 215 32-317 90-309 (839)
110 KOG2055 WD40 repeat protein [G 99.9 1.4E-24 3.1E-29 178.8 22.0 270 1-306 230-512 (514)
111 KOG4283 Transcription-coupled 99.9 3.1E-25 6.7E-30 173.1 16.9 226 26-306 40-276 (397)
112 KOG1036 Mitotic spindle checkp 99.9 6.9E-24 1.5E-28 166.5 24.4 250 29-316 13-273 (323)
113 KOG0289 mRNA splicing factor [ 99.9 3.9E-24 8.4E-29 175.0 23.5 236 30-307 220-463 (506)
114 KOG0267 Microtubule severing p 99.9 1.6E-26 3.5E-31 199.8 9.8 217 1-299 45-261 (825)
115 KOG0302 Ribosome Assembly prot 99.9 8.2E-25 1.8E-29 175.9 17.8 239 3-299 172-432 (440)
116 PTZ00420 coronin; Provisional 99.9 6.3E-24 1.4E-28 189.3 25.2 208 1-284 92-316 (568)
117 KOG0646 WD40 repeat protein [G 99.9 8.3E-25 1.8E-29 180.4 17.8 218 2-284 99-329 (476)
118 KOG0299 U3 snoRNP-associated p 99.9 8E-24 1.7E-28 174.3 23.5 259 1-304 159-454 (479)
119 KOG0302 Ribosome Assembly prot 99.9 6.9E-25 1.5E-29 176.4 16.8 232 24-306 146-378 (440)
120 KOG0305 Anaphase promoting com 99.9 1.5E-24 3.2E-29 186.0 19.7 217 1-254 234-463 (484)
121 KOG2106 Uncharacterized conser 99.9 2.9E-23 6.3E-28 173.0 26.1 252 1-306 262-521 (626)
122 KOG0321 WD40 repeat-containing 99.9 3.8E-24 8.3E-29 182.8 21.1 269 2-306 70-391 (720)
123 KOG0278 Serine/threonine kinas 99.9 4.1E-25 8.8E-30 168.5 12.0 217 1-255 76-300 (334)
124 KOG0268 Sof1-like rRNA process 99.9 4.9E-25 1.1E-29 176.4 12.4 236 22-306 59-302 (433)
125 KOG1036 Mitotic spindle checkp 99.9 2.6E-23 5.7E-28 163.2 21.8 248 2-296 31-294 (323)
126 KOG2048 WD40 repeat protein [G 99.9 1.1E-22 2.3E-27 175.2 27.3 265 2-306 43-319 (691)
127 KOG0267 Microtubule severing p 99.9 7.2E-26 1.6E-30 195.8 7.8 203 25-306 24-226 (825)
128 KOG2445 Nuclear pore complex c 99.9 5.4E-23 1.2E-27 161.4 22.0 223 26-307 10-257 (361)
129 KOG4283 Transcription-coupled 99.9 3.1E-23 6.7E-28 162.0 20.5 269 1-305 61-364 (397)
130 KOG0973 Histone transcription 99.9 1.2E-23 2.6E-28 190.1 17.9 240 28-315 12-322 (942)
131 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 8.7E-22 1.9E-26 167.5 28.4 262 1-314 6-288 (300)
132 KOG0647 mRNA export protein (c 99.9 1.2E-22 2.6E-27 159.1 20.6 217 28-313 26-289 (347)
133 KOG0650 WD40 repeat nucleolar 99.9 3.6E-23 7.8E-28 175.7 18.8 256 20-304 391-733 (733)
134 KOG0307 Vesicle coat complex C 99.9 2.7E-24 5.8E-29 195.2 12.7 236 1-307 85-328 (1049)
135 KOG1539 WD repeat protein [Gen 99.9 1.8E-22 3.9E-27 177.6 23.6 267 1-306 262-648 (910)
136 KOG1274 WD40 repeat protein [G 99.9 2E-22 4.4E-27 179.1 23.4 255 1-303 30-297 (933)
137 KOG0294 WD40 repeat-containing 99.9 2.1E-22 4.5E-27 158.6 19.8 218 1-255 58-284 (362)
138 KOG1274 WD40 repeat protein [G 99.9 6.9E-22 1.5E-26 175.7 24.9 237 26-307 10-263 (933)
139 KOG0639 Transducin-like enhanc 99.9 8.7E-23 1.9E-27 170.2 16.2 238 27-311 417-669 (705)
140 KOG0303 Actin-binding protein 99.9 2.9E-22 6.2E-27 162.3 18.0 229 24-321 76-311 (472)
141 KOG0270 WD40 repeat-containing 99.9 3.8E-22 8.2E-27 163.9 17.7 224 32-308 176-406 (463)
142 KOG0642 Cell-cycle nuclear pro 99.9 1.8E-22 3.9E-27 170.5 13.4 243 1-311 311-567 (577)
143 KOG4328 WD40 protein [Function 99.9 4.4E-21 9.6E-26 158.2 20.6 269 1-307 205-496 (498)
144 KOG1007 WD repeat protein TSSC 99.9 7.5E-21 1.6E-25 148.3 20.7 276 4-309 38-364 (370)
145 KOG0772 Uncharacterized conser 99.9 6.1E-22 1.3E-26 165.6 15.7 212 80-315 167-405 (641)
146 KOG1273 WD40 repeat protein [G 99.9 2.9E-21 6.3E-26 152.3 18.6 262 1-306 40-322 (405)
147 KOG1408 WD40 repeat protein [F 99.9 1.3E-21 2.7E-26 169.8 17.5 224 1-253 476-714 (1080)
148 KOG4378 Nuclear protein COP1 [ 99.9 9.9E-22 2.1E-26 163.7 16.2 207 1-284 96-303 (673)
149 KOG4328 WD40 protein [Function 99.9 1.7E-21 3.8E-26 160.6 17.1 222 20-306 177-399 (498)
150 KOG1188 WD40 repeat protein [G 99.9 7.6E-21 1.6E-25 151.5 18.9 274 2-308 46-348 (376)
151 KOG0322 G-protein beta subunit 99.9 1.3E-21 2.9E-26 150.6 13.5 251 21-305 6-322 (323)
152 KOG4378 Nuclear protein COP1 [ 99.9 1.7E-20 3.8E-25 156.3 20.3 270 2-317 8-293 (673)
153 KOG1273 WD40 repeat protein [G 99.9 8.1E-21 1.8E-25 149.8 16.5 226 32-322 26-297 (405)
154 KOG2106 Uncharacterized conser 99.9 8.8E-20 1.9E-24 152.4 22.8 242 23-305 362-625 (626)
155 KOG2048 WD40 repeat protein [G 99.9 3.5E-19 7.6E-24 153.7 26.7 241 29-308 25-277 (691)
156 KOG1034 Transcriptional repres 99.9 5.4E-21 1.2E-25 151.6 10.9 240 2-305 111-382 (385)
157 KOG1445 Tumor-specific antigen 99.9 3.2E-20 6.8E-25 159.3 16.2 247 3-316 600-856 (1012)
158 KOG2055 WD40 repeat protein [G 99.9 1.3E-19 2.8E-24 149.9 19.1 239 29-306 213-467 (514)
159 KOG2919 Guanine nucleotide-bin 99.9 2.9E-19 6.2E-24 141.6 20.2 250 31-316 51-339 (406)
160 KOG2919 Guanine nucleotide-bin 99.8 1.2E-19 2.6E-24 143.8 17.1 226 2-297 129-361 (406)
161 KOG1538 Uncharacterized conser 99.8 2E-19 4.2E-24 155.3 19.7 252 4-306 31-293 (1081)
162 KOG0307 Vesicle coat complex C 99.8 7.4E-21 1.6E-25 173.1 11.0 244 3-315 36-294 (1049)
163 KOG1034 Transcriptional repres 99.8 1.5E-19 3.2E-24 143.5 16.7 246 6-307 64-338 (385)
164 KOG0290 Conserved WD40 repeat- 99.8 2.2E-19 4.7E-24 140.3 17.0 232 2-297 117-357 (364)
165 KOG0290 Conserved WD40 repeat- 99.8 3.1E-19 6.8E-24 139.4 17.6 245 5-308 72-320 (364)
166 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 2.7E-18 5.9E-23 146.0 25.0 237 2-284 49-300 (300)
167 KOG2096 WD40 repeat protein [G 99.8 1.5E-19 3.2E-24 143.0 15.5 177 108-306 80-308 (420)
168 PRK11028 6-phosphogluconolacto 99.8 2.4E-17 5.2E-22 141.9 28.1 269 2-306 8-304 (330)
169 KOG1517 Guanine nucleotide bin 99.8 6.5E-18 1.4E-22 152.8 22.7 269 3-307 1083-1382(1387)
170 KOG1009 Chromatin assembly com 99.8 4.1E-18 8.8E-23 138.9 19.1 249 1-307 31-373 (434)
171 KOG1587 Cytoplasmic dynein int 99.8 2.2E-17 4.8E-22 146.1 24.9 268 6-308 222-518 (555)
172 KOG0649 WD40 repeat protein [G 99.8 1.8E-17 3.9E-22 126.6 19.4 262 1-346 27-309 (325)
173 KOG0321 WD40 repeat-containing 99.8 5.2E-18 1.1E-22 145.7 18.3 226 1-255 117-394 (720)
174 KOG0303 Actin-binding protein 99.8 7.9E-19 1.7E-23 142.6 11.8 167 109-306 76-249 (472)
175 KOG1007 WD repeat protein TSSC 99.8 1.1E-17 2.4E-22 130.8 17.0 221 57-306 38-289 (370)
176 KOG4227 WD40 repeat protein [G 99.8 2.4E-17 5.2E-22 134.2 17.8 250 21-306 48-322 (609)
177 KOG1009 Chromatin assembly com 99.8 9.8E-18 2.1E-22 136.7 15.6 173 29-255 13-198 (434)
178 KOG1310 WD40 repeat protein [G 99.8 4.7E-18 1E-22 143.7 14.0 247 20-322 41-321 (758)
179 KOG0771 Prolactin regulatory e 99.8 7.3E-18 1.6E-22 138.3 14.7 203 33-307 148-355 (398)
180 KOG1963 WD40 repeat protein [G 99.8 2.6E-16 5.7E-21 140.2 25.3 279 1-307 222-539 (792)
181 KOG1188 WD40 repeat protein [G 99.8 3.6E-17 7.8E-22 130.7 17.1 202 50-313 41-250 (376)
182 KOG2394 WD40 protein DMR-N9 [G 99.8 8.4E-17 1.8E-21 135.9 20.1 239 47-312 133-458 (636)
183 KOG0644 Uncharacterized conser 99.8 1.1E-18 2.3E-23 154.2 8.9 226 1-306 207-468 (1113)
184 KOG1517 Guanine nucleotide bin 99.8 2.8E-16 6E-21 142.5 23.0 263 31-317 1066-1344(1387)
185 KOG1334 WD40 repeat protein [G 99.8 2.8E-17 6E-22 137.2 15.0 274 20-317 133-436 (559)
186 KOG1445 Tumor-specific antigen 99.8 2.6E-17 5.7E-22 141.6 14.5 166 114-306 627-798 (1012)
187 COG2319 FOG: WD40 repeat [Gene 99.8 4.5E-15 9.7E-20 132.0 29.7 263 2-308 83-361 (466)
188 KOG1587 Cytoplasmic dynein int 99.7 1.1E-16 2.3E-21 141.8 18.6 226 1-254 260-518 (555)
189 KOG2110 Uncharacterized conser 99.7 1.2E-15 2.7E-20 123.3 22.7 236 30-309 6-251 (391)
190 COG2319 FOG: WD40 repeat [Gene 99.7 2.3E-15 5.1E-20 133.8 27.4 239 24-306 60-314 (466)
191 KOG0649 WD40 repeat protein [G 99.7 8.8E-17 1.9E-21 122.9 15.2 221 31-313 12-243 (325)
192 KOG1524 WD40 repeat-containing 99.7 6.9E-17 1.5E-21 136.4 16.0 204 2-304 81-284 (737)
193 KOG1963 WD40 repeat protein [G 99.7 5.5E-16 1.2E-20 138.1 21.8 275 4-319 35-336 (792)
194 KOG0644 Uncharacterized conser 99.7 4.2E-18 9.2E-23 150.5 8.3 211 22-311 183-432 (1113)
195 KOG0322 G-protein beta subunit 99.7 1E-16 2.3E-21 123.8 14.9 219 1-251 30-322 (323)
196 KOG1523 Actin-related protein 99.7 4.1E-16 8.9E-21 123.7 18.5 222 28-308 9-238 (361)
197 KOG1523 Actin-related protein 99.7 3.5E-16 7.6E-21 124.1 17.9 228 3-298 29-270 (361)
198 KOG4227 WD40 repeat protein [G 99.7 1.8E-16 3.9E-21 129.1 16.2 279 1-305 73-386 (609)
199 KOG1240 Protein kinase contain 99.7 7.1E-16 1.5E-20 141.9 21.6 265 11-311 1034-1339(1431)
200 KOG1409 Uncharacterized conser 99.7 1.6E-16 3.6E-21 127.2 14.2 215 17-255 12-273 (404)
201 KOG2110 Uncharacterized conser 99.7 2.4E-14 5.3E-19 115.9 26.1 229 7-306 69-330 (391)
202 KOG0771 Prolactin regulatory e 99.7 9.7E-17 2.1E-21 131.7 12.1 195 1-253 161-355 (398)
203 PRK01742 tolB translocation pr 99.7 1.1E-15 2.3E-20 135.8 19.8 227 4-318 182-416 (429)
204 KOG1524 WD40 repeat-containing 99.7 2E-16 4.2E-21 133.7 13.9 222 27-297 12-247 (737)
205 KOG1310 WD40 repeat protein [G 99.7 8.8E-17 1.9E-21 136.2 10.1 181 106-305 42-230 (758)
206 KOG1272 WD40-repeat-containing 99.7 5.7E-17 1.2E-21 134.5 8.7 223 32-304 132-360 (545)
207 KOG1538 Uncharacterized conser 99.7 2.5E-15 5.4E-20 130.4 17.8 237 31-315 14-261 (1081)
208 KOG0650 WD40 repeat nucleolar 99.7 4.6E-15 9.9E-20 127.0 18.3 220 1-249 417-732 (733)
209 KOG0642 Cell-cycle nuclear pro 99.7 1.4E-15 3E-20 129.3 14.1 240 19-319 284-533 (577)
210 KOG1240 Protein kinase contain 99.7 2.9E-14 6.2E-19 131.5 23.2 272 1-304 1066-1431(1431)
211 KOG3881 Uncharacterized conser 99.7 1.1E-14 2.5E-19 118.6 18.4 210 28-307 104-321 (412)
212 KOG2111 Uncharacterized conser 99.7 1.9E-13 4.1E-18 108.7 24.6 170 6-207 75-258 (346)
213 PRK11028 6-phosphogluconolacto 99.7 5E-13 1.1E-17 115.1 28.3 227 4-253 55-305 (330)
214 KOG2394 WD40 protein DMR-N9 [G 99.6 2.9E-15 6.3E-20 126.7 11.7 164 29-232 219-384 (636)
215 PF08662 eIF2A: Eukaryotic tra 99.6 5E-14 1.1E-18 110.5 17.2 139 148-313 37-186 (194)
216 KOG1354 Serine/threonine prote 99.6 7.5E-14 1.6E-18 112.2 17.5 274 1-311 42-364 (433)
217 KOG3881 Uncharacterized conser 99.6 4E-14 8.7E-19 115.5 16.2 217 2-284 121-341 (412)
218 KOG4497 Uncharacterized conser 99.6 5.1E-13 1.1E-17 106.9 21.2 254 2-299 67-425 (447)
219 KOG2111 Uncharacterized conser 99.6 2.6E-13 5.7E-18 107.9 19.4 163 113-307 93-257 (346)
220 KOG2139 WD40 repeat protein [G 99.6 1.7E-13 3.6E-18 110.9 18.3 247 30-313 99-390 (445)
221 KOG1334 WD40 repeat protein [G 99.6 2.8E-14 6E-19 119.5 13.0 274 1-305 159-465 (559)
222 PRK03629 tolB translocation pr 99.6 5.4E-13 1.2E-17 118.4 21.7 224 6-317 179-417 (429)
223 KOG0280 Uncharacterized conser 99.6 9.3E-13 2E-17 103.8 19.1 267 4-304 44-331 (339)
224 PRK04922 tolB translocation pr 99.6 8.8E-13 1.9E-17 117.5 21.9 221 6-314 184-419 (433)
225 KOG2321 WD40 repeat protein [G 99.5 6.8E-13 1.5E-17 113.5 18.2 167 108-306 169-343 (703)
226 KOG0974 WD-repeat protein WDR6 99.5 3.2E-13 7E-18 122.9 16.8 145 141-311 148-293 (967)
227 PRK05137 tolB translocation pr 99.5 2.6E-12 5.6E-17 114.7 22.4 220 6-313 182-419 (435)
228 PRK02889 tolB translocation pr 99.5 3.5E-12 7.5E-17 113.4 21.6 223 6-314 176-411 (427)
229 PF10282 Lactonase: Lactonase, 99.5 2.1E-10 4.6E-15 99.1 31.3 270 5-306 12-322 (345)
230 KOG1272 WD40-repeat-containing 99.5 5.2E-14 1.1E-18 117.2 8.1 187 81-306 130-323 (545)
231 PF08662 eIF2A: Eukaryotic tra 99.5 3.7E-12 8E-17 100.0 18.0 112 114-254 59-181 (194)
232 COG2706 3-carboxymuconate cycl 99.5 6.4E-11 1.4E-15 96.5 25.2 269 5-306 15-321 (346)
233 KOG4547 WD40 repeat-containing 99.5 2.6E-12 5.6E-17 110.4 17.4 210 47-306 3-220 (541)
234 PRK01742 tolB translocation pr 99.5 2E-12 4.4E-17 115.0 17.0 193 5-284 227-425 (429)
235 KOG2139 WD40 repeat protein [G 99.5 1.9E-10 4.1E-15 93.5 25.6 267 1-306 115-431 (445)
236 PF02239 Cytochrom_D1: Cytochr 99.5 1E-10 2.2E-15 101.1 25.2 235 4-306 14-302 (369)
237 TIGR02800 propeller_TolB tol-p 99.4 4.8E-11 1E-15 106.4 22.0 221 5-313 169-404 (417)
238 KOG0974 WD-repeat protein WDR6 99.4 1E-11 2.2E-16 113.4 16.7 157 141-318 102-258 (967)
239 KOG1064 RAVE (regulator of V-A 99.4 6.5E-12 1.4E-16 120.3 13.5 187 26-255 2205-2401(2439)
240 KOG4190 Uncharacterized conser 99.4 1.1E-12 2.4E-17 112.1 7.1 216 20-304 726-946 (1034)
241 PF10282 Lactonase: Lactonase, 99.4 4.8E-09 1E-13 90.7 29.6 227 4-252 60-322 (345)
242 KOG0280 Uncharacterized conser 99.4 1.2E-11 2.6E-16 97.7 11.9 188 4-251 141-332 (339)
243 KOG2315 Predicted translation 99.4 3.4E-10 7.3E-15 97.1 21.1 251 7-310 106-394 (566)
244 PRK04922 tolB translocation pr 99.3 1.1E-10 2.3E-15 104.2 18.6 163 112-313 201-375 (433)
245 PRK05137 tolB translocation pr 99.3 4.7E-10 1E-14 100.2 22.2 163 111-312 198-372 (435)
246 PRK03629 tolB translocation pr 99.3 2.1E-10 4.6E-15 101.9 19.7 194 5-284 222-427 (429)
247 KOG4497 Uncharacterized conser 99.3 5.4E-11 1.2E-15 95.5 13.8 188 34-304 13-238 (447)
248 KOG4190 Uncharacterized conser 99.3 3.3E-11 7.2E-16 103.2 12.8 232 1-306 752-988 (1034)
249 KOG1354 Serine/threonine prote 99.3 2.2E-10 4.7E-15 92.6 16.4 238 29-320 25-317 (433)
250 PRK00178 tolB translocation pr 99.3 1.1E-09 2.3E-14 98.1 22.7 220 7-314 180-414 (430)
251 PRK02889 tolB translocation pr 99.3 6.1E-10 1.3E-14 99.1 20.9 167 112-313 193-367 (427)
252 KOG4547 WD40 repeat-containing 99.3 1.2E-09 2.7E-14 94.3 21.2 117 111-253 99-221 (541)
253 TIGR02658 TTQ_MADH_Hv methylam 99.3 3.6E-08 7.7E-13 83.6 29.0 266 6-315 27-340 (352)
254 KOG2321 WD40 repeat protein [G 99.3 1E-10 2.2E-15 100.5 13.7 190 2-255 151-346 (703)
255 KOG1409 Uncharacterized conser 99.3 4.3E-10 9.3E-15 90.9 15.8 174 4-207 88-272 (404)
256 PRK04792 tolB translocation pr 99.2 2.8E-09 6.1E-14 95.2 21.7 221 7-315 199-434 (448)
257 COG5170 CDC55 Serine/threonine 99.2 2.2E-10 4.8E-15 91.4 12.1 269 1-304 43-365 (460)
258 KOG2041 WD40 repeat protein [G 99.2 1.5E-09 3.3E-14 95.9 17.4 244 1-284 31-318 (1189)
259 PRK01029 tolB translocation pr 99.2 9E-09 2E-13 91.3 22.7 227 6-313 165-410 (428)
260 KOG3914 WD repeat protein WDR4 99.2 4.5E-10 9.7E-15 92.6 13.1 157 130-314 72-232 (390)
261 KOG0309 Conserved WD40 repeat- 99.2 6.8E-11 1.5E-15 104.5 8.7 223 7-253 92-340 (1081)
262 KOG4532 WD40-like repeat conta 99.2 6.5E-09 1.4E-13 81.5 18.2 158 141-313 131-290 (344)
263 KOG0309 Conserved WD40 repeat- 99.2 1.4E-10 3.1E-15 102.5 10.2 251 29-311 24-344 (1081)
264 PF02239 Cytochrom_D1: Cytochr 99.2 1.9E-08 4.1E-13 87.1 22.7 188 49-307 5-203 (369)
265 TIGR02800 propeller_TolB tol-p 99.2 8.1E-09 1.8E-13 92.2 20.3 161 112-311 187-359 (417)
266 KOG4714 Nucleoporin [Nuclear s 99.1 2.6E-10 5.6E-15 88.8 8.4 150 141-311 104-259 (319)
267 PF04762 IKI3: IKI3 family; I 99.1 1.1E-07 2.4E-12 91.4 26.9 234 29-304 75-377 (928)
268 KOG2041 WD40 repeat protein [G 99.1 4.3E-09 9.4E-14 93.1 15.6 135 29-208 14-148 (1189)
269 COG2706 3-carboxymuconate cycl 99.1 1.9E-07 4.1E-12 76.6 23.9 234 58-314 15-284 (346)
270 KOG2314 Translation initiation 99.1 5.2E-08 1.1E-12 83.9 21.2 259 6-311 282-578 (698)
271 KOG2315 Predicted translation 99.1 8.4E-08 1.8E-12 82.8 22.1 214 5-255 145-393 (566)
272 KOG2695 WD40 repeat protein [G 99.1 3E-10 6.4E-15 91.9 6.9 156 142-314 228-385 (425)
273 KOG4532 WD40-like repeat conta 99.1 5.8E-08 1.3E-12 76.3 18.8 234 2-307 90-332 (344)
274 KOG1064 RAVE (regulator of V-A 99.1 2.2E-09 4.8E-14 103.7 13.2 167 112-315 2206-2376(2439)
275 PRK00178 tolB translocation pr 99.1 5E-08 1.1E-12 87.4 21.0 163 112-313 196-370 (430)
276 KOG4714 Nucleoporin [Nuclear s 99.0 4.5E-09 9.8E-14 82.0 11.9 120 177-304 181-316 (319)
277 PLN02919 haloacid dehalogenase 99.0 2.5E-07 5.4E-12 90.6 26.4 239 48-308 579-890 (1057)
278 COG5170 CDC55 Serine/threonine 99.0 8.4E-09 1.8E-13 82.6 12.8 239 29-321 26-326 (460)
279 PRK01029 tolB translocation pr 99.0 1.3E-07 2.8E-12 84.0 20.3 116 117-255 283-406 (428)
280 TIGR03300 assembly_YfgL outer 99.0 4.1E-07 8.9E-12 80.0 22.5 132 141-303 244-376 (377)
281 KOG1912 WD40 repeat protein [G 98.9 9.9E-08 2.1E-12 85.5 17.9 237 6-306 35-304 (1062)
282 COG4946 Uncharacterized protei 98.9 3.2E-07 7E-12 77.8 20.0 143 112-292 357-504 (668)
283 KOG3914 WD repeat protein WDR4 98.9 4.3E-08 9.4E-13 81.1 14.5 143 47-208 72-226 (390)
284 PF15492 Nbas_N: Neuroblastoma 98.9 8.5E-07 1.9E-11 70.7 20.8 181 116-313 45-267 (282)
285 PF00400 WD40: WD domain, G-be 98.9 6.6E-09 1.4E-13 58.5 6.5 38 20-65 2-39 (39)
286 TIGR02658 TTQ_MADH_Hv methylam 98.9 3E-06 6.5E-11 72.1 25.2 224 3-255 74-333 (352)
287 TIGR03300 assembly_YfgL outer 98.9 8.3E-07 1.8E-11 78.1 23.0 265 2-315 71-348 (377)
288 KOG0882 Cyclophilin-related pe 98.9 2.6E-08 5.6E-13 83.6 12.3 227 27-317 7-243 (558)
289 PRK04792 tolB translocation pr 98.9 3.2E-07 6.9E-12 82.2 19.4 160 113-311 216-387 (448)
290 PLN02919 haloacid dehalogenase 98.9 1.8E-06 3.9E-11 84.8 25.5 202 32-255 626-891 (1057)
291 PF00400 WD40: WD domain, G-be 98.9 4.9E-09 1.1E-13 59.0 4.4 38 213-250 2-39 (39)
292 PF04762 IKI3: IKI3 family; I 98.8 6E-06 1.3E-10 79.7 25.5 271 2-306 93-456 (928)
293 COG5354 Uncharacterized protei 98.8 7.5E-06 1.6E-10 70.3 22.6 253 5-311 107-400 (561)
294 KOG2695 WD40 repeat protein [G 98.8 3.2E-08 6.9E-13 80.4 7.8 122 114-255 252-379 (425)
295 PF08450 SGL: SMP-30/Gluconola 98.8 1.4E-05 3.1E-10 65.8 23.9 202 48-314 11-221 (246)
296 COG4946 Uncharacterized protei 98.7 2.9E-05 6.3E-10 66.4 24.8 160 130-323 330-494 (668)
297 PF13360 PQQ_2: PQQ-like domai 98.7 1.1E-05 2.3E-10 66.1 21.6 220 4-309 1-234 (238)
298 PRK04043 tolB translocation pr 98.7 2.6E-05 5.7E-10 69.0 24.9 198 31-314 189-408 (419)
299 KOG1920 IkappaB kinase complex 98.7 5.5E-06 1.2E-10 78.3 21.1 233 29-304 68-363 (1265)
300 KOG0882 Cyclophilin-related pe 98.7 2.8E-07 6E-12 77.6 11.0 234 1-255 25-308 (558)
301 PF15492 Nbas_N: Neuroblastoma 98.7 1.2E-05 2.6E-10 64.3 19.3 179 32-255 46-262 (282)
302 KOG1008 Uncharacterized conser 98.7 1.5E-08 3.3E-13 88.7 3.2 212 30-306 57-275 (783)
303 PF07433 DUF1513: Protein of u 98.6 6.7E-05 1.4E-09 61.9 23.3 234 8-298 30-278 (305)
304 COG5354 Uncharacterized protei 98.6 8.8E-06 1.9E-10 69.9 18.6 193 30-255 174-398 (561)
305 PF08450 SGL: SMP-30/Gluconola 98.6 0.00013 2.8E-09 60.1 25.4 149 114-294 85-244 (246)
306 PF11768 DUF3312: Protein of u 98.6 1.3E-05 2.9E-10 70.4 19.1 75 173-254 257-331 (545)
307 KOG2114 Vacuolar assembly/sort 98.6 2.2E-05 4.9E-10 71.7 20.7 197 2-255 41-246 (933)
308 PRK11138 outer membrane biogen 98.6 5.2E-05 1.1E-09 67.2 23.1 250 2-306 126-394 (394)
309 KOG1275 PAB-dependent poly(A) 98.6 1.6E-06 3.4E-11 79.4 13.4 176 5-251 156-341 (1118)
310 KOG2114 Vacuolar assembly/sort 98.5 1.2E-05 2.6E-10 73.4 18.4 154 141-307 80-244 (933)
311 KOG1008 Uncharacterized conser 98.5 1.1E-07 2.3E-12 83.6 5.3 242 1-305 75-334 (783)
312 KOG2066 Vacuolar assembly/sort 98.5 4.6E-06 9.9E-11 75.5 15.4 187 29-306 39-233 (846)
313 PF08596 Lgl_C: Lethal giant l 98.5 0.00012 2.6E-09 63.9 23.3 244 31-307 3-291 (395)
314 KOG2066 Vacuolar assembly/sort 98.5 2.3E-05 5.1E-10 71.1 18.4 138 47-205 81-233 (846)
315 KOG1912 WD40 repeat protein [G 98.5 1.6E-05 3.4E-10 71.9 16.4 289 2-318 85-468 (1062)
316 PF06433 Me-amine-dh_H: Methyl 98.4 0.00051 1.1E-08 57.5 23.3 275 6-317 17-332 (342)
317 KOG1275 PAB-dependent poly(A) 98.4 1.4E-05 3E-10 73.5 14.6 147 130-305 185-341 (1118)
318 KOG3621 WD40 repeat-containing 98.4 1.3E-05 2.8E-10 71.7 13.8 210 47-316 43-256 (726)
319 KOG1832 HIV-1 Vpr-binding prot 98.3 5.2E-07 1.1E-11 82.3 4.5 162 19-255 1091-1258(1516)
320 PRK11138 outer membrane biogen 98.3 0.00045 9.7E-09 61.2 23.0 226 49-313 120-361 (394)
321 KOG1645 RING-finger-containing 98.3 0.00016 3.5E-09 60.6 18.1 231 2-306 212-461 (463)
322 PF04053 Coatomer_WDAD: Coatom 98.3 0.0004 8.6E-09 61.6 21.6 250 6-308 2-264 (443)
323 KOG2314 Translation initiation 98.3 0.00021 4.6E-09 62.4 18.9 228 33-307 214-526 (698)
324 PRK04043 tolB translocation pr 98.3 0.0004 8.7E-09 61.6 21.0 157 116-313 189-364 (419)
325 PF11768 DUF3312: Protein of u 98.2 0.00012 2.6E-09 64.6 16.0 91 9-157 239-330 (545)
326 PF06977 SdiA-regulated: SdiA- 98.1 0.00022 4.9E-09 57.9 15.6 211 108-342 15-233 (248)
327 KOG1832 HIV-1 Vpr-binding prot 98.1 3.1E-06 6.7E-11 77.5 4.8 173 105-317 1092-1267(1516)
328 PF13360 PQQ_2: PQQ-like domai 98.1 0.0017 3.8E-08 53.0 19.8 185 3-255 43-233 (238)
329 KOG3621 WD40 repeat-containing 98.0 6.1E-05 1.3E-09 67.5 11.1 123 174-307 32-155 (726)
330 KOG1645 RING-finger-containing 98.0 5.2E-05 1.1E-09 63.5 9.6 122 109-255 188-318 (463)
331 PF07433 DUF1513: Protein of u 98.0 0.0035 7.6E-08 52.0 19.7 199 48-313 16-255 (305)
332 PF03178 CPSF_A: CPSF A subuni 97.9 0.011 2.4E-07 50.8 23.2 241 6-303 2-262 (321)
333 PHA02713 hypothetical protein; 97.9 0.0023 4.9E-08 59.2 19.0 143 141-306 355-533 (557)
334 KOG3617 WD40 and TPR repeat-co 97.9 0.00042 9.1E-09 63.8 13.7 102 33-157 19-132 (1416)
335 KOG1920 IkappaB kinase complex 97.9 0.0056 1.2E-07 58.9 21.2 199 81-306 69-322 (1265)
336 PF08596 Lgl_C: Lethal giant l 97.8 0.0084 1.8E-07 52.6 20.8 221 19-297 76-327 (395)
337 smart00320 WD40 WD40 repeats. 97.8 6.3E-05 1.4E-09 41.2 5.3 38 20-65 3-40 (40)
338 KOG3617 WD40 and TPR repeat-co 97.8 0.0042 9.2E-08 57.6 18.6 262 2-299 77-378 (1416)
339 PF06977 SdiA-regulated: SdiA- 97.7 0.016 3.4E-07 47.3 23.3 217 23-303 15-247 (248)
340 smart00320 WD40 WD40 repeats. 97.7 6.7E-05 1.4E-09 41.1 4.0 37 214-250 4-40 (40)
341 PF08553 VID27: VID27 cytoplas 97.7 0.0017 3.6E-08 61.2 14.8 141 141-305 496-646 (794)
342 KOG4640 Anaphase-promoting com 97.7 0.00024 5.2E-09 63.1 8.7 95 175-284 20-115 (665)
343 PRK02888 nitrous-oxide reducta 97.7 0.0081 1.8E-07 54.8 17.9 117 185-307 286-405 (635)
344 PF04841 Vps16_N: Vps16, N-ter 97.6 0.015 3.3E-07 51.6 19.6 63 183-254 186-248 (410)
345 PF03178 CPSF_A: CPSF A subuni 97.6 0.029 6.2E-07 48.3 20.0 180 6-249 62-262 (321)
346 KOG4441 Proteins containing BT 97.5 0.017 3.6E-07 53.6 19.0 215 6-255 301-549 (571)
347 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.009 2E-07 41.4 13.0 104 32-200 2-109 (111)
348 COG3386 Gluconolactonase [Carb 97.5 0.046 1E-06 46.2 20.8 110 177-297 164-277 (307)
349 KOG4649 PQQ (pyrrolo-quinoline 97.5 0.031 6.7E-07 44.8 16.9 143 49-252 23-165 (354)
350 COG3204 Uncharacterized protei 97.5 0.021 4.6E-07 46.6 16.2 180 110-315 81-272 (316)
351 cd00216 PQQ_DH Dehydrogenases 97.5 0.084 1.8E-06 48.3 24.2 108 189-314 303-433 (488)
352 KOG4640 Anaphase-promoting com 97.5 0.001 2.3E-08 59.2 9.5 94 115-232 21-115 (665)
353 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.019 4E-07 39.9 14.3 105 117-248 2-110 (111)
354 COG3386 Gluconolactonase [Carb 97.3 0.075 1.6E-06 45.0 18.9 153 150-315 87-252 (307)
355 PF08553 VID27: VID27 cytoplas 97.3 0.013 2.9E-07 55.3 15.0 103 141-252 545-647 (794)
356 PHA02713 hypothetical protein; 97.3 0.012 2.6E-07 54.6 14.5 96 148-255 432-536 (557)
357 PF00930 DPPIV_N: Dipeptidyl p 97.2 0.12 2.6E-06 45.1 23.7 256 5-305 22-312 (353)
358 PRK13616 lipoprotein LpqB; Pro 97.1 0.19 4.1E-06 46.8 20.7 75 175-252 447-525 (591)
359 KOG4441 Proteins containing BT 97.0 0.091 2E-06 48.8 17.8 223 48-306 284-546 (571)
360 PHA03098 kelch-like protein; P 97.0 0.078 1.7E-06 49.2 17.5 106 148-273 406-524 (534)
361 KOG2444 WD40 repeat protein [G 97.0 0.0036 7.9E-08 48.9 7.2 141 141-306 33-177 (238)
362 PF14870 PSII_BNR: Photosynthe 97.0 0.18 3.8E-06 42.6 27.5 158 113-303 143-301 (302)
363 KOG2395 Protein involved in va 96.9 0.027 6E-07 49.7 12.6 140 141-305 349-499 (644)
364 KOG2079 Vacuolar assembly/sort 96.9 0.005 1.1E-07 58.5 8.8 103 186-306 98-203 (1206)
365 PF05694 SBP56: 56kDa selenium 96.9 0.23 5E-06 43.4 17.9 109 142-255 216-345 (461)
366 PF15390 DUF4613: Domain of un 96.8 0.2 4.4E-06 45.2 17.2 128 113-254 55-188 (671)
367 PF04053 Coatomer_WDAD: Coatom 96.8 0.12 2.5E-06 46.3 15.9 144 113-308 31-175 (443)
368 PF12894 Apc4_WD40: Anaphase-p 96.8 0.0039 8.4E-08 36.0 4.5 34 274-309 11-44 (47)
369 PRK02888 nitrous-oxide reducta 96.7 0.15 3.3E-06 46.9 16.3 74 116-206 322-405 (635)
370 PF00780 CNH: CNH domain; Int 96.7 0.29 6.2E-06 41.0 23.5 239 2-315 13-265 (275)
371 PF05694 SBP56: 56kDa selenium 96.7 0.4 8.7E-06 42.0 19.4 183 148-350 157-390 (461)
372 PRK13616 lipoprotein LpqB; Pro 96.6 0.13 2.7E-06 48.0 15.6 154 115-306 350-525 (591)
373 COG3391 Uncharacterized conser 96.6 0.49 1.1E-05 41.8 22.0 159 116-306 117-283 (381)
374 PF12234 Rav1p_C: RAVE protein 96.5 0.23 4.9E-06 46.1 15.9 106 141-254 43-158 (631)
375 PF05096 Glu_cyclase_2: Glutam 96.5 0.38 8.2E-06 39.4 21.1 198 20-295 34-250 (264)
376 COG0823 TolB Periplasmic compo 96.5 0.51 1.1E-05 42.1 17.7 112 119-255 242-361 (425)
377 PF14870 PSII_BNR: Photosynthe 96.4 0.47 1E-05 40.1 22.9 113 173-299 142-255 (302)
378 PF12894 Apc4_WD40: Anaphase-p 96.4 0.011 2.3E-07 34.2 4.7 30 222-251 11-40 (47)
379 PHA03098 kelch-like protein; P 96.4 0.5 1.1E-05 43.9 18.3 145 141-309 346-514 (534)
380 cd00216 PQQ_DH Dehydrogenases 96.3 0.88 1.9E-05 41.7 21.4 103 141-255 304-427 (488)
381 KOG1916 Nuclear protein, conta 96.3 0.0062 1.3E-07 56.9 4.8 124 110-252 128-265 (1283)
382 PHA02790 Kelch-like protein; P 96.3 0.6 1.3E-05 42.7 17.6 140 141-307 322-471 (480)
383 PF04841 Vps16_N: Vps16, N-ter 96.3 0.77 1.7E-05 40.9 21.6 155 115-306 81-246 (410)
384 KOG2444 WD40 repeat protein [G 96.2 0.015 3.3E-07 45.6 6.0 103 141-254 73-179 (238)
385 KOG4649 PQQ (pyrrolo-quinoline 96.2 0.5 1.1E-05 38.2 19.2 64 130-206 103-166 (354)
386 KOG2395 Protein involved in va 96.2 0.29 6.2E-06 43.6 14.0 104 141-252 397-500 (644)
387 PHA02790 Kelch-like protein; P 96.1 0.47 1E-05 43.3 16.0 99 141-254 366-472 (480)
388 PF12234 Rav1p_C: RAVE protein 96.0 0.53 1.2E-05 43.8 15.7 120 178-306 32-156 (631)
389 PF06433 Me-amine-dh_H: Methyl 96.0 0.87 1.9E-05 38.8 22.5 226 5-255 66-323 (342)
390 COG3204 Uncharacterized protei 96.0 0.76 1.6E-05 38.0 17.1 162 26-207 82-265 (316)
391 COG0823 TolB Periplasmic compo 95.9 0.22 4.7E-06 44.4 12.7 154 114-306 192-358 (425)
392 COG3490 Uncharacterized protei 95.9 0.59 1.3E-05 38.4 13.7 98 141-249 83-186 (366)
393 PF02897 Peptidase_S9_N: Proly 95.9 1.2 2.6E-05 39.9 23.1 151 149-312 203-364 (414)
394 KOG2079 Vacuolar assembly/sort 95.8 0.072 1.6E-06 51.2 9.5 74 113-204 129-202 (1206)
395 KOG4499 Ca2+-binding protein R 95.8 0.72 1.6E-05 36.7 14.9 141 83-239 111-271 (310)
396 COG3391 Uncharacterized conser 95.4 1.8 3.8E-05 38.3 21.7 183 5-255 95-286 (381)
397 PF08728 CRT10: CRT10; InterP 95.3 1.3 2.9E-05 41.7 15.6 112 186-305 113-245 (717)
398 PF08728 CRT10: CRT10; InterP 95.3 0.88 1.9E-05 42.9 14.4 109 141-251 117-245 (717)
399 KOG3630 Nuclear pore complex, 95.3 0.15 3.3E-06 49.4 9.6 138 141-293 117-260 (1405)
400 PF05096 Glu_cyclase_2: Glutam 95.2 1.4 3.1E-05 36.1 16.2 98 141-241 142-249 (264)
401 PF15390 DUF4613: Domain of un 95.1 0.88 1.9E-05 41.3 13.2 122 177-309 58-189 (671)
402 PF14727 PHTB1_N: PTHB1 N-term 95.0 2.4 5.3E-05 37.6 17.0 59 187-251 145-203 (418)
403 KOG3630 Nuclear pore complex, 95.0 0.24 5.1E-06 48.2 9.8 127 176-314 101-236 (1405)
404 COG3490 Uncharacterized protei 94.8 1.2 2.5E-05 36.8 11.9 168 5-204 139-347 (366)
405 PF00780 CNH: CNH domain; Int 94.7 2.2 4.7E-05 35.7 19.9 154 47-255 5-168 (275)
406 KOG2377 Uncharacterized conser 94.6 1.5 3.2E-05 38.6 12.9 155 141-313 36-192 (657)
407 TIGR02604 Piru_Ver_Nterm putat 94.5 1.9 4E-05 38.0 14.1 152 116-297 15-204 (367)
408 PF14727 PHTB1_N: PTHB1 N-term 94.5 3.2 6.9E-05 36.9 15.1 150 140-305 39-203 (418)
409 PF10168 Nup88: Nuclear pore c 94.5 1.3 2.7E-05 42.4 13.5 36 113-157 145-180 (717)
410 PF10313 DUF2415: Uncharacteri 94.3 0.16 3.5E-06 28.5 4.4 32 115-157 1-34 (43)
411 PF10313 DUF2415: Uncharacteri 94.3 0.17 3.7E-06 28.3 4.5 31 223-253 1-34 (43)
412 PF12657 TFIIIC_delta: Transcr 94.1 2 4.4E-05 33.1 11.9 47 115-167 86-133 (173)
413 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.0 5.2 0.00011 37.1 23.7 23 233-255 471-493 (527)
414 PF14655 RAB3GAP2_N: Rab3 GTPa 93.9 4.5 9.7E-05 36.0 20.8 42 275-318 308-350 (415)
415 PF10647 Gmad1: Lipoprotein Lp 93.8 3.3 7.2E-05 34.2 14.6 153 116-297 25-186 (253)
416 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.5 6.4 0.00014 36.5 25.3 29 287-315 471-500 (527)
417 PF07569 Hira: TUP1-like enhan 93.5 0.45 9.7E-06 38.3 7.5 73 230-306 18-95 (219)
418 PF10168 Nup88: Nuclear pore c 93.5 3.2 7E-05 39.8 14.1 82 174-255 83-182 (717)
419 KOG4499 Ca2+-binding protein R 93.3 1.2 2.6E-05 35.6 9.1 96 179-284 161-263 (310)
420 KOG1900 Nuclear pore complex, 93.2 1.7 3.8E-05 43.3 12.0 154 142-307 93-273 (1311)
421 PF07569 Hira: TUP1-like enhan 93.2 0.79 1.7E-05 36.8 8.5 79 183-270 18-105 (219)
422 KOG2280 Vacuolar assembly/sort 93.1 8.1 0.00018 36.5 15.5 33 223-255 217-249 (829)
423 KOG1897 Damage-specific DNA bi 92.8 10 0.00023 37.0 23.2 222 49-306 684-942 (1096)
424 COG4590 ABC-type uncharacteriz 92.7 3 6.5E-05 36.8 11.5 165 113-306 219-386 (733)
425 PF14761 HPS3_N: Hermansky-Pud 92.6 4.3 9.3E-05 32.2 14.5 151 141-305 31-213 (215)
426 PLN02193 nitrile-specifier pro 92.6 8.1 0.00018 35.3 20.5 72 186-269 328-419 (470)
427 PRK13684 Ycf48-like protein; P 92.5 6.6 0.00014 34.0 24.7 157 114-305 172-330 (334)
428 TIGR02604 Piru_Ver_Nterm putat 92.5 7.1 0.00015 34.3 14.5 60 176-241 124-202 (367)
429 PF12768 Rax2: Cortical protei 92.2 6.1 0.00013 33.1 13.5 118 147-284 15-146 (281)
430 PF07995 GSDH: Glucose / Sorbo 92.2 2.2 4.8E-05 36.9 10.6 119 178-299 4-136 (331)
431 PF13449 Phytase-like: Esteras 92.1 7.3 0.00016 33.6 16.8 125 177-306 86-249 (326)
432 PF14761 HPS3_N: Hermansky-Pud 91.8 4.9 0.00011 31.8 10.8 112 188-308 29-165 (215)
433 PF14655 RAB3GAP2_N: Rab3 GTPa 91.7 2 4.4E-05 38.1 9.7 84 227-311 6-102 (415)
434 PLN02153 epithiospecifier prot 91.3 9.2 0.0002 33.2 21.1 12 197-208 217-228 (341)
435 PF00930 DPPIV_N: Dipeptidyl p 91.2 9.6 0.00021 33.3 17.1 89 141-241 251-346 (353)
436 TIGR03606 non_repeat_PQQ dehyd 91.0 12 0.00025 33.9 14.0 116 114-243 29-166 (454)
437 PF12768 Rax2: Cortical protei 90.8 4.3 9.3E-05 34.0 10.4 95 197-304 16-121 (281)
438 TIGR03548 mutarot_permut cycli 90.8 9.9 0.00022 32.7 19.2 62 141-208 127-197 (323)
439 PRK13684 Ycf48-like protein; P 90.7 11 0.00023 32.8 22.0 112 175-302 172-284 (334)
440 PLN02153 epithiospecifier prot 90.4 11 0.00024 32.6 15.4 151 141-309 89-287 (341)
441 TIGR03606 non_repeat_PQQ dehyd 90.3 11 0.00024 34.0 13.1 58 177-234 31-90 (454)
442 COG5167 VID27 Protein involved 90.2 8.2 0.00018 34.8 11.7 139 141-306 483-632 (776)
443 PF14781 BBS2_N: Ciliary BBSom 90.1 5.6 0.00012 28.9 12.5 116 180-308 3-127 (136)
444 PF10647 Gmad1: Lipoprotein Lp 90.1 9.7 0.00021 31.5 22.1 112 116-243 67-186 (253)
445 PF14583 Pectate_lyase22: Olig 89.9 1.9 4E-05 37.6 7.7 73 177-255 37-113 (386)
446 KOG2247 WD40 repeat-containing 89.7 0.044 9.5E-07 48.0 -2.1 134 141-304 49-186 (615)
447 KOG1900 Nuclear pore complex, 89.6 26 0.00056 35.7 17.2 140 3-157 96-273 (1311)
448 TIGR03548 mutarot_permut cycli 89.3 13 0.00029 31.9 16.3 99 186-297 123-233 (323)
449 PRK14131 N-acetylneuraminic ac 88.9 16 0.00034 32.3 18.6 15 148-164 189-203 (376)
450 PRK14131 N-acetylneuraminic ac 88.7 16 0.00034 32.3 13.0 41 245-296 190-230 (376)
451 PF03022 MRJP: Major royal jel 88.6 14 0.0003 31.3 13.1 151 149-309 35-218 (287)
452 PF10214 Rrn6: RNA polymerase 88.5 26 0.00057 34.4 16.8 122 116-254 147-278 (765)
453 PF07250 Glyoxal_oxid_N: Glyox 88.4 11 0.00024 30.8 10.7 154 150-317 48-209 (243)
454 KOG4460 Nuclear pore complex, 88.3 20 0.00042 32.7 14.0 33 116-157 167-199 (741)
455 PF02897 Peptidase_S9_N: Proly 88.2 19 0.00041 32.2 24.1 85 2-98 146-244 (414)
456 KOG1916 Nuclear protein, conta 88.0 0.34 7.3E-06 46.1 2.1 118 173-305 130-264 (1283)
457 TIGR03547 muta_rot_YjhT mutatr 88.0 17 0.00037 31.6 20.6 132 148-298 168-332 (346)
458 KOG1897 Damage-specific DNA bi 87.9 29 0.00063 34.2 26.9 106 141-254 502-615 (1096)
459 PF14583 Pectate_lyase22: Olig 87.8 18 0.00039 31.7 21.4 165 114-305 187-380 (386)
460 PF07995 GSDH: Glucose / Sorbo 87.8 15 0.00032 31.9 11.9 113 116-244 3-135 (331)
461 KOG4460 Nuclear pore complex, 87.6 9.2 0.0002 34.6 10.3 81 175-255 103-201 (741)
462 TIGR03118 PEPCTERM_chp_1 conse 87.4 16 0.00035 30.7 15.8 186 117-318 25-242 (336)
463 PF02333 Phytase: Phytase; In 87.2 20 0.00043 31.5 21.9 161 148-315 127-301 (381)
464 PLN02193 nitrile-specifier pro 86.6 25 0.00055 32.1 16.9 148 141-308 232-412 (470)
465 PF11635 Med16: Mediator compl 86.1 36 0.00078 33.3 20.5 73 175-247 259-345 (753)
466 KOG2377 Uncharacterized conser 85.9 25 0.00055 31.4 12.2 105 113-238 65-169 (657)
467 PF11715 Nup160: Nucleoporin N 85.7 3.8 8.1E-05 38.3 7.8 72 185-256 156-252 (547)
468 COG5290 IkappaB kinase complex 85.5 36 0.00078 32.8 16.7 103 180-296 251-358 (1243)
469 PLN00033 photosystem II stabil 85.2 27 0.00059 31.1 23.6 115 175-303 280-396 (398)
470 PF11715 Nup160: Nucleoporin N 84.7 6 0.00013 37.0 8.6 67 141-208 161-251 (547)
471 PF03088 Str_synth: Strictosid 84.3 5.5 0.00012 26.7 5.9 42 193-240 33-74 (89)
472 PF13449 Phytase-like: Esteras 83.9 27 0.00059 30.1 16.7 121 117-252 87-249 (326)
473 TIGR03547 muta_rot_YjhT mutatr 83.7 29 0.00062 30.2 13.3 43 244-297 168-210 (346)
474 PF12657 TFIIIC_delta: Transcr 83.4 18 0.0004 27.8 9.5 32 276-307 87-122 (173)
475 COG5167 VID27 Protein involved 82.6 38 0.00083 30.8 12.2 62 186-253 572-633 (776)
476 PF07676 PD40: WD40-like Beta 81.6 5.3 0.00011 21.6 4.4 28 222-249 8-38 (39)
477 PF07250 Glyoxal_oxid_N: Glyox 80.6 6.9 0.00015 32.0 6.4 89 199-298 48-139 (243)
478 TIGR02276 beta_rpt_yvtn 40-res 79.9 6.4 0.00014 21.5 4.5 24 232-255 1-25 (42)
479 KOG2247 WD40 repeat-containing 79.6 0.34 7.5E-06 42.7 -1.4 91 141-244 90-180 (615)
480 PF12341 DUF3639: Protein of u 78.6 4.9 0.00011 20.0 3.1 25 276-304 3-27 (27)
481 TIGR03118 PEPCTERM_chp_1 conse 78.4 41 0.00088 28.5 21.0 167 140-322 102-296 (336)
482 KOG3616 Selective LIM binding 78.0 6.8 0.00015 37.1 6.1 68 175-250 14-81 (1636)
483 PF01436 NHL: NHL repeat; Int 76.5 7.8 0.00017 19.3 4.1 25 225-249 4-28 (28)
484 COG4590 ABC-type uncharacteriz 76.0 18 0.00038 32.3 7.7 207 92-306 127-346 (733)
485 PF08801 Nucleoporin_N: Nup133 75.5 62 0.0013 29.1 14.3 31 176-206 190-220 (422)
486 COG5308 NUP170 Nuclear pore co 74.8 91 0.002 30.8 15.0 128 175-306 181-352 (1263)
487 PF14269 Arylsulfotran_2: Aryl 71.9 62 0.0013 27.6 10.9 129 177-312 145-295 (299)
488 PF10214 Rrn6: RNA polymerase 71.3 1.1E+02 0.0024 30.2 18.9 80 176-256 146-236 (765)
489 KOG3522 Predicted guanine nucl 70.9 74 0.0016 31.0 10.9 73 114-206 626-698 (925)
490 KOG2280 Vacuolar assembly/sort 70.7 1E+02 0.0023 29.7 14.9 38 275-314 217-255 (829)
491 TIGR03074 PQQ_membr_DH membran 69.9 1.2E+02 0.0025 29.9 20.2 28 49-76 194-221 (764)
492 COG3823 Glutamine cyclotransfe 69.3 57 0.0012 26.0 12.1 20 221-240 227-247 (262)
493 PF01731 Arylesterase: Arylest 68.8 20 0.00043 23.9 5.1 29 224-252 55-84 (86)
494 KOG3522 Predicted guanine nucl 66.5 27 0.00059 33.7 7.2 148 141-306 550-697 (925)
495 TIGR03074 PQQ_membr_DH membran 65.5 1.4E+02 0.0031 29.3 20.7 21 236-256 461-481 (764)
496 KOG0379 Kelch repeat-containin 65.3 1.1E+02 0.0025 28.1 11.5 131 149-297 89-234 (482)
497 KOG3616 Selective LIM binding 65.2 20 0.00044 34.1 6.1 77 222-313 14-90 (1636)
498 COG5308 NUP170 Nuclear pore co 64.3 23 0.00051 34.5 6.4 82 223-308 182-277 (1263)
499 KOG1983 Tomosyn and related SN 64.0 1.6E+02 0.0035 30.1 12.4 29 31-67 37-65 (993)
500 smart00564 PQQ beta-propeller 63.7 15 0.00032 18.7 3.2 24 50-73 7-30 (33)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-45 Score=292.84 Aligned_cols=274 Identities=22% Similarity=0.287 Sum_probs=243.8
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.|.++|+||..+ . .+.++.++|...|.|++|+ |+++.||+|+.||+|++||..++++.......+.
T Consensus 132 tGsGD~TvR~WD~~T-e--Tp~~t~KgH~~WVlcvaws--------PDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~ 200 (480)
T KOG0271|consen 132 TGSGDTTVRLWDLDT-E--TPLFTCKGHKNWVLCVAWS--------PDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHK 200 (480)
T ss_pred ecCCCceEEeeccCC-C--CcceeecCCccEEEEEEEC--------CCcchhhccccCCeEEEecCCCCCcccccccCcc
Confidence 689999999999998 5 5788999999999999999 8999999999999999999999999988888899
Q ss_pred cceeeeEeee-----cCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC
Q 048511 81 KEVISLASYI-----EGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD 147 (351)
Q Consensus 81 ~~~~~~~~~~-----~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d 147 (351)
..+.+++|.| ..+.+++++.++.+++|. .+.+|+.+|+|+.|- .++ + +.+|+.|
T Consensus 201 K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG------G~g-l------iySgS~D 267 (480)
T KOG0271|consen 201 KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG------GEG-L------IYSGSQD 267 (480)
T ss_pred cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEc------CCc-e------EEecCCC
Confidence 9999999976 567899999999998775 467999999999998 333 4 9999999
Q ss_pred CeEEEEeccCCCcceEEEEEeccccccccceEEEEEc-----------CCCC-------------------------EEE
Q 048511 148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWS-----------PDGR-------------------------SIL 191 (351)
Q Consensus 148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~-----------~~~~-------------------------~l~ 191 (351)
++|++|+... |.+.+.++ +|...|..++++ |.++ .|+
T Consensus 268 rtIkvw~a~d--G~~~r~lk-----GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlV 340 (480)
T KOG0271|consen 268 RTIKVWRALD--GKLCRELK-----GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLV 340 (480)
T ss_pred ceEEEEEccc--hhHHHhhc-----ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeE
Confidence 9999999998 88777776 888888888766 3333 499
Q ss_pred EEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccc
Q 048511 192 AHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQ 271 (351)
Q Consensus 192 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 271 (351)
+|+.|.++.+|+....+ +++..+.+|...|+.+.||||++++|+++-|+.|++||.++++ .+..++
T Consensus 341 SgsDd~tlflW~p~~~k----kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk----------~lasfR 406 (480)
T KOG0271|consen 341 SGSDDFTLFLWNPFKSK----KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGK----------FLASFR 406 (480)
T ss_pred EecCCceEEEecccccc----cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcc----------hhhhhh
Confidence 99999999999987664 6889999999999999999999999999999999999999998 888999
Q ss_pred ccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecccccc
Q 048511 272 VHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATFQES 321 (351)
Q Consensus 272 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~~~ 321 (351)
+|-..|+.++|+. |.++|++|+.|.++++|++. .+..+-|.+|...-.
T Consensus 407 GHv~~VYqvawsa--DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf 455 (480)
T KOG0271|consen 407 GHVAAVYQVAWSA--DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVF 455 (480)
T ss_pred hccceeEEEEecc--CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEE
Confidence 9999999999999 99999999999999999998 666677776665433
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.6e-45 Score=293.84 Aligned_cols=258 Identities=16% Similarity=0.244 Sum_probs=234.1
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
|||.+|.++||+... . ..+.+|.||.+.|.++.|+ |. .++..||||+.||++++|++.....+..+. ++.
T Consensus 192 T~swsG~~kvW~~~~-~--~~~~~l~gH~~~v~~~~fh----P~--~~~~~lat~s~Dgtvklw~~~~e~~l~~l~-gH~ 261 (459)
T KOG0272|consen 192 TGSWSGLVKVWSVPQ-C--NLLQTLRGHTSRVGAAVFH----PV--DSDLNLATASADGTVKLWKLSQETPLQDLE-GHL 261 (459)
T ss_pred EeecCCceeEeecCC-c--ceeEEEeccccceeeEEEc----cC--CCccceeeeccCCceeeeccCCCcchhhhh-cch
Confidence 689999999999988 5 6778999999999999999 32 246799999999999999999876665554 345
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI 152 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i 152 (351)
..+..++|+|+|++|.+++-+...++|.. ..||...|.+++|. +||.+ ++||+.|..-+|
T Consensus 262 ~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~------~DGSL------~~tGGlD~~~Rv 329 (459)
T KOG0272|consen 262 ARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQ------PDGSL------AATGGLDSLGRV 329 (459)
T ss_pred hhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEec------CCCce------eeccCccchhhe
Confidence 78889999999999999999998888764 56899999999999 89999 999999999999
Q ss_pred EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511 153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR 232 (351)
Q Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 232 (351)
||+++ +.++..+. +|..+|.+++|+|+|-.||+|+.|++++|||++.. ..++++.+|..-|+.|+|+|
T Consensus 330 WDlRt--gr~im~L~-----gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r-----~~ly~ipAH~nlVS~Vk~~p 397 (459)
T KOG0272|consen 330 WDLRT--GRCIMFLA-----GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR-----SELYTIPAHSNLVSQVKYSP 397 (459)
T ss_pred eeccc--CcEEEEec-----ccccceeeEeECCCceEEeecCCCCcEEEeeeccc-----ccceecccccchhhheEecc
Confidence 99999 88887776 89999999999999999999999999999999987 56899999999999999999
Q ss_pred -CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511 233 -SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE 304 (351)
Q Consensus 233 -~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~ 304 (351)
.|.+|+|++.|++++||..++.. ++..+.+|...|.++++++ ++++|++++.|.++++|.
T Consensus 398 ~~g~fL~TasyD~t~kiWs~~~~~----------~~ksLaGHe~kV~s~Dis~--d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 398 QEGYFLVTASYDNTVKIWSTRTWS----------PLKSLAGHEGKVISLDISP--DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCCeEEEEcccCcceeeecCCCcc----------cchhhcCCccceEEEEecc--CCceEEEeccCceeeecc
Confidence 78889999999999999975554 8999999999999999999 999999999999999996
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-41 Score=270.37 Aligned_cols=258 Identities=21% Similarity=0.342 Sum_probs=227.1
Q ss_pred EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511 20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS 99 (351)
Q Consensus 20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (351)
.+...+.||.++|.|++|+ |++..|+||+.|.++|+||+.+........ .+..-+.+++|+|||+.|++|.
T Consensus 106 rCssS~~GH~e~Vl~~~fs--------p~g~~l~tGsGD~TvR~WD~~TeTp~~t~K-gH~~WVlcvawsPDgk~iASG~ 176 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFS--------PTGSRLVTGSGDTTVRLWDLDTETPLFTCK-GHKNWVLCVAWSPDGKKIASGS 176 (480)
T ss_pred eeccccCCCCCcEEEEEec--------CCCceEEecCCCceEEeeccCCCCcceeec-CCccEEEEEEECCCcchhhccc
Confidence 4556789999999999999 889999999999999999999877665443 4567899999999999999999
Q ss_pred CceeEEEEE---------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecc
Q 048511 100 SSYQVSVES---------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGE 170 (351)
Q Consensus 100 ~~~~~~~~~---------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 170 (351)
.++.|.+|. .+.+|...|++++|.|-+.. +..++ ||+++.||.|+|||+.. +.++..+.
T Consensus 177 ~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~-p~~r~------las~skDg~vrIWd~~~--~~~~~~ls--- 244 (480)
T KOG0271|consen 177 KDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLV-PPCRR------LASSSKDGSVRIWDTKL--GTCVRTLS--- 244 (480)
T ss_pred cCCeEEEecCCCCCcccccccCcccceeEEeecccccC-CCccc------eecccCCCCEEEEEccC--ceEEEEec---
Confidence 999998886 48899999999999986643 55566 99999999999999998 77777766
Q ss_pred ccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEee-----------cCCC----
Q 048511 171 LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWS-----------RSSD---- 235 (351)
Q Consensus 171 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~s-----------p~~~---- 235 (351)
+|+.+|+|++|-.+ .+|++++.|++|++|+...+ .+...+++|...|+.++++ |.++
T Consensus 245 --gHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG-----~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~ 316 (480)
T KOG0271|consen 245 --GHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDG-----KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKS 316 (480)
T ss_pred --cCccceEEEEEcCC-ceEEecCCCceEEEEEccch-----hHHHhhcccchheeeeeccchhhhhccccccccccCCC
Confidence 99999999999544 58999999999999999887 6789999999999999877 2233
Q ss_pred ---------------------EEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEe
Q 048511 236 ---------------------YLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSG 294 (351)
Q Consensus 236 ---------------------~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~ 294 (351)
.|++|+.|.++.+|+....+ +++.+..+|..-|+.+.|+| |+++||++
T Consensus 317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k---------kpi~rmtgHq~lVn~V~fSP--d~r~IASa 385 (480)
T KOG0271|consen 317 FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK---------KPITRMTGHQALVNHVSFSP--DGRYIASA 385 (480)
T ss_pred hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc---------cchhhhhchhhheeeEEECC--CccEEEEe
Confidence 49999999999999986555 47888889999999999999 99999999
Q ss_pred cCCCeEEEEecC-chhhhceeecc
Q 048511 295 ADEKVARVFEAP-LSFLKTLNHAT 317 (351)
Q Consensus 295 ~~dg~v~vw~~~-~~~~~~~~~~~ 317 (351)
+-|..|++|+-. |+++.+|.+|-
T Consensus 386 SFDkSVkLW~g~tGk~lasfRGHv 409 (480)
T KOG0271|consen 386 SFDKSVKLWDGRTGKFLASFRGHV 409 (480)
T ss_pred ecccceeeeeCCCcchhhhhhhcc
Confidence 999999999976 99999999875
No 4
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7e-39 Score=242.93 Aligned_cols=276 Identities=15% Similarity=0.225 Sum_probs=235.1
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc-cceeeccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS-SANTQSTY 79 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~-~~~~~~~~ 79 (351)
+++.|.+||+|...+ | .+..+++...+.|+.+... ++++.||+++. ..||+||+++... .......+
T Consensus 15 sA~YDhTIRfWqa~t-G--~C~rTiqh~dsqVNrLeiT--------pdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h 82 (311)
T KOG0315|consen 15 SAGYDHTIRFWQALT-G--ICSRTIQHPDSQVNRLEIT--------PDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGH 82 (311)
T ss_pred eccCcceeeeeehhc-C--eEEEEEecCccceeeEEEc--------CCcchhhhccC-CeeEEEEccCCCCCceeEEecc
Confidence 578999999999999 8 6788998778899999999 88999999886 5799999998876 34445556
Q ss_pred ccceeeeEeeecCCeEEecCCceeEEEEEe-------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511 80 RKEVISLASYIEGPVLVAGSSSYQVSVESL-------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI 152 (351)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i 152 (351)
..++.++.|..+|+.+++|++++.+++|.. ...|..+|+++..+| +... |++|..+|.|++
T Consensus 83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhp------nQte------Lis~dqsg~irv 150 (311)
T KOG0315|consen 83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHP------NQTE------LISGDQSGNIRV 150 (311)
T ss_pred CCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecC------Ccce------EEeecCCCcEEE
Confidence 789999999999999999999999998864 445789999999995 5555 999999999999
Q ss_pred EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcc-cCcccccccccccccEEEEEee
Q 048511 153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDI-DNWQPQKVPSGHFAAVMDISWS 231 (351)
Q Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~~~~~v~~v~~s 231 (351)
||+.. ..+...+. +.....|.++...|+|..++.+...|..++|++-+... ..+.++.++++|.+.+..+.+|
T Consensus 151 WDl~~--~~c~~~li----Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lS 224 (311)
T KOG0315|consen 151 WDLGE--NSCTHELI----PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLS 224 (311)
T ss_pred EEccC--CccccccC----CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEEC
Confidence 99998 55554443 24456899999999999999999999999999965432 2457888999999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhh
Q 048511 232 RSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFL 310 (351)
Q Consensus 232 p~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~ 310 (351)
|++++|++++.|.+++||+..+. ++.-..+.+|...++.++|+. |+++|++|+.|+.+|+|+++ ++.+
T Consensus 225 Pd~k~lat~ssdktv~iwn~~~~---------~kle~~l~gh~rWvWdc~FS~--dg~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 225 PDVKYLATCSSDKTVKIWNTDDF---------FKLELVLTGHQRWVWDCAFSA--DGEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred CCCcEEEeecCCceEEEEecCCc---------eeeEEEeecCCceEEeeeecc--CccEEEecCCCCceeecccccCcee
Confidence 99999999999999999998665 124445668889999999999 99999999999999999987 7777
Q ss_pred hceeecc
Q 048511 311 KTLNHAT 317 (351)
Q Consensus 311 ~~~~~~~ 317 (351)
+...+|.
T Consensus 294 ~qy~gh~ 300 (311)
T KOG0315|consen 294 RQYQGHH 300 (311)
T ss_pred eecCCcc
Confidence 7777665
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5e-39 Score=249.08 Aligned_cols=254 Identities=22% Similarity=0.263 Sum_probs=220.4
Q ss_pred eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEec
Q 048511 19 FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAG 98 (351)
Q Consensus 19 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 98 (351)
+...++|+||.+.|.++.|+ ++.++|+++|.||.+.|||..+......+.. ...-+..++|+|.|+.+++|
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws--------~Dsr~ivSaSqDGklIvWDs~TtnK~haipl-~s~WVMtCA~sPSg~~VAcG 115 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWS--------TDSRRIVSASQDGKLIVWDSFTTNKVHAIPL-PSSWVMTCAYSPSGNFVACG 115 (343)
T ss_pred eeeEEEecccccceeeeEec--------CCcCeEEeeccCCeEEEEEcccccceeEEec-CceeEEEEEECCCCCeEEec
Confidence 34457899999999999999 8999999999999999999988766554433 24578899999999999998
Q ss_pred CCcee--------------EEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEE
Q 048511 99 SSSYQ--------------VSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMN 164 (351)
Q Consensus 99 ~~~~~--------------~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 164 (351)
+.+.. +++.+.+.+|++.+.|+.|. .| .. |++++.|.+..+||+++ ++.+.
T Consensus 116 GLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~------dD-~~------ilT~SGD~TCalWDie~--g~~~~ 180 (343)
T KOG0286|consen 116 GLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFL------DD-NH------ILTGSGDMTCALWDIET--GQQTQ 180 (343)
T ss_pred CcCceeEEEecccccccccceeeeeecCccceeEEEEEc------CC-Cc------eEecCCCceEEEEEccc--ceEEE
Confidence 75543 34556688999999999998 43 44 99999999999999999 88777
Q ss_pred EEEeccccccccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCC
Q 048511 165 VVTVGELSHSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD 243 (351)
Q Consensus 165 ~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d 243 (351)
.+. +|.+.|.+++++| +++.+++|+-|+..++||++.+ .++++|.+|+..|++|+|.|+|.-|++|++|
T Consensus 181 ~f~-----GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-----~c~qtF~ghesDINsv~ffP~G~afatGSDD 250 (343)
T KOG0286|consen 181 VFH-----GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-----QCVQTFEGHESDINSVRFFPSGDAFATGSDD 250 (343)
T ss_pred Eec-----CCcccEEEEecCCCCCCeEEecccccceeeeeccCc-----ceeEeecccccccceEEEccCCCeeeecCCC
Confidence 776 9999999999999 9999999999999999999998 6799999999999999999999999999999
Q ss_pred CcEEEEcCCCccccccCccceEEeccc--cccccceeEEEEeeeCCCcEEEEecCCCeEEEEe-cCchhhhceeeccc
Q 048511 244 QTTRVFAPWKNVASLMGENSWHEVARP--QVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE-APLSFLKTLNHATF 318 (351)
Q Consensus 244 g~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~-~~~~~~~~~~~~~~ 318 (351)
++.++||++... .+..+ .....+|++++|+. .|++|.+|..|..+.+|| +.++....|.+|.+
T Consensus 251 ~tcRlyDlRaD~----------~~a~ys~~~~~~gitSv~FS~--SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN 316 (343)
T KOG0286|consen 251 ATCRLYDLRADQ----------ELAVYSHDSIICGITSVAFSK--SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN 316 (343)
T ss_pred ceeEEEeecCCc----------EEeeeccCcccCCceeEEEcc--cccEEEeeecCCceeEeeccccceEEEeeccCC
Confidence 999999999887 33322 23345699999999 899999999999999999 56888888888764
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.8e-40 Score=266.40 Aligned_cols=253 Identities=20% Similarity=0.207 Sum_probs=225.5
Q ss_pred eecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeec--CCeEEecCCcee
Q 048511 26 KGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIE--GPVLVAGSSSYQ 103 (351)
Q Consensus 26 ~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~ 103 (351)
-|-+.+|..+.|+ .+++.|+|||.+|.+++|+......+ ....++...+.++.|+|. +..++++..++.
T Consensus 172 ~gd~rPis~~~fS--------~ds~~laT~swsG~~kvW~~~~~~~~-~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgt 242 (459)
T KOG0272|consen 172 VGDTRPISGCSFS--------RDSKHLATGSWSGLVKVWSVPQCNLL-QTLRGHTSRVGAAVFHPVDSDLNLATASADGT 242 (459)
T ss_pred ccCCCcceeeEee--------cCCCeEEEeecCCceeEeecCCccee-EEEeccccceeeEEEccCCCccceeeeccCCc
Confidence 3567899999999 89999999999999999999987444 445566788999999997 668999999999
Q ss_pred EEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc
Q 048511 104 VSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA 175 (351)
Q Consensus 104 ~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 175 (351)
+++|+. +.+|...|..++|+ |+|++ |+|++.|.+-++||+++ +..+... .+|.
T Consensus 243 vklw~~~~e~~l~~l~gH~~RVs~VafH------PsG~~------L~TasfD~tWRlWD~~t--k~ElL~Q-----EGHs 303 (459)
T KOG0272|consen 243 VKLWKLSQETPLQDLEGHLARVSRVAFH------PSGKF------LGTASFDSTWRLWDLET--KSELLLQ-----EGHS 303 (459)
T ss_pred eeeeccCCCcchhhhhcchhhheeeeec------CCCce------eeecccccchhhccccc--chhhHhh-----cccc
Confidence 988764 77899999999999 79999 99999999999999998 4433333 3899
Q ss_pred cceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511 176 LGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 176 ~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
..|.+++|+|||..+++|+.|..-+|||++++ .++..+.+|..+|.+|+|+|+|-.||||+.|++++|||++..+
T Consensus 304 ~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg-----r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~ 378 (459)
T KOG0272|consen 304 KGVFSIAFQPDGSLAATGGLDSLGRVWDLRTG-----RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS 378 (459)
T ss_pred cccceeEecCCCceeeccCccchhheeecccC-----cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccc
Confidence 99999999999999999999999999999998 5688999999999999999999999999999999999999887
Q ss_pred ccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeeccccccc
Q 048511 256 ASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATFQESS 322 (351)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~~~~ 322 (351)
.+..+.+|..-|+.+.|+| ..|.+|++++.|++++||... ...+++|.+|.+.-..
T Consensus 379 ----------~ly~ipAH~nlVS~Vk~~p-~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s 435 (459)
T KOG0272|consen 379 ----------ELYTIPAHSNLVSQVKYSP-QEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVIS 435 (459)
T ss_pred ----------cceecccccchhhheEecc-cCCeEEEEcccCcceeeecCCCcccchhhcCCccceEE
Confidence 5777789999999999998 579999999999999999976 8899999999865443
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.9e-38 Score=242.05 Aligned_cols=269 Identities=20% Similarity=0.273 Sum_probs=214.7
Q ss_pred CCCCCceEEEEEccCCC-ce-EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc
Q 048511 1 MGGLDNKIHLYRGQRTG-KF-VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST 78 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~-~~-~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~ 78 (351)
+++.|.+|.+|++..+. ++ ..++.+.||...|..+..+ +++++.++++.|+++++||+.+++.. ....+
T Consensus 33 sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s--------~dg~~alS~swD~~lrlWDl~~g~~t-~~f~G 103 (315)
T KOG0279|consen 33 SASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLS--------SDGNFALSASWDGTLRLWDLATGEST-RRFVG 103 (315)
T ss_pred EcccceEEEEEEeccCccccCceeeeeeccceEecceEEc--------cCCceEEeccccceEEEEEecCCcEE-EEEEe
Confidence 36889999999987621 11 4578899999999999999 89999999999999999999998544 34456
Q ss_pred cccceeeeEeeecCCeEEecCCceeEEEEEecc---------ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCe
Q 048511 79 YRKEVISLASYIEGPVLVAGSSSYQVSVESLLI---------GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT 149 (351)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~ 149 (351)
+...+++++++++++.+++|+++..+++|.++. .|.+.|.|+.|+|+. +..+ |++++.|++
T Consensus 104 H~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~----~~p~------Ivs~s~Dkt 173 (315)
T KOG0279|consen 104 HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE----SNPI------IVSASWDKT 173 (315)
T ss_pred cCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC----CCcE------EEEccCCce
Confidence 678999999999999999999999998887632 237889999999742 2445 999999999
Q ss_pred EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEE
Q 048511 150 MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDIS 229 (351)
Q Consensus 150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~ 229 (351)
|++||++. .+....+. +|...++.++++|||...++|+.||.+.+||++.++ .++.+. |...|.+++
T Consensus 174 vKvWnl~~--~~l~~~~~-----gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k-----~lysl~-a~~~v~sl~ 240 (315)
T KOG0279|consen 174 VKVWNLRN--CQLRTTFI-----GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK-----NLYSLE-AFDIVNSLC 240 (315)
T ss_pred EEEEccCC--cchhhccc-----cccccEEEEEECCCCCEEecCCCCceEEEEEccCCc-----eeEecc-CCCeEeeEE
Confidence 99999998 55555554 899999999999999999999999999999999873 466654 778999999
Q ss_pred eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecc-ccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVAR-PQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 230 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
|+|+.-+|+.+ .+..|+|||+........ -....+.. .+.......+++|++ +|..|.+|-.|+.|++|.+.
T Consensus 241 fspnrywL~~a-t~~sIkIwdl~~~~~v~~--l~~d~~g~s~~~~~~~clslaws~--dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 241 FSPNRYWLCAA-TATSIKIWDLESKAVVEE--LKLDGIGPSSKAGDPICLSLAWSA--DGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ecCCceeEeec-cCCceEEEeccchhhhhh--ccccccccccccCCcEEEEEEEcC--CCcEEEeeecCCcEEEEEee
Confidence 99996656554 566799999988874320 00001111 111122356778888 99999999999999999864
No 8
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-38 Score=253.69 Aligned_cols=257 Identities=20% Similarity=0.300 Sum_probs=230.0
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK 81 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~ 81 (351)
++.|++|++||..+ +++ ...++||++.|..|+|+ ..|++|++++.|-.+++||..+..........+..
T Consensus 126 as~d~tikv~D~~t-g~~--e~~LrGHt~sv~di~~~--------a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h 194 (406)
T KOG0295|consen 126 ASEDATIKVFDTET-GEL--ERSLRGHTDSVFDISFD--------ASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEH 194 (406)
T ss_pred ecCCceEEEEEccc-hhh--hhhhhccccceeEEEEe--------cCccEEEecCCccchhheeHHHHHHHHHHhcCccc
Confidence 57899999999999 854 78999999999999999 88999999999999999999886555555566677
Q ss_pred ceeeeEeeecCCeEEecCCceeEEEE--------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511 82 EVISLASYIEGPVLVAGSSSYQVSVE--------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW 153 (351)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 153 (351)
.+.++.|-|.|.++++++.+..++.| .++.+|...|..++.+ .||.+ +++++.|.+|++|
T Consensus 195 ~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~------~DGti------~As~s~dqtl~vW 262 (406)
T KOG0295|consen 195 GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVN------QDGTI------IASCSNDQTLRVW 262 (406)
T ss_pred ceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEec------CCeeE------EEecCCCceEEEE
Confidence 88899999999999999999888655 4688999999999999 99999 9999999999999
Q ss_pred eccCCCcceEEEEEeccccccccceEEEEEcCC---------------CCEEEEEeeCCeEEEEEcccCcccCccccccc
Q 048511 154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD---------------GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP 218 (351)
Q Consensus 154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~---------------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 218 (351)
-+.+ +++...++ .|+.+|.+++|.|. ++++.+++.|++|++||+.++ .++.++
T Consensus 263 ~~~t--~~~k~~lR-----~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-----~cL~tL 330 (406)
T KOG0295|consen 263 VVAT--KQCKAELR-----EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-----MCLFTL 330 (406)
T ss_pred Eecc--chhhhhhh-----ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-----eEEEEE
Confidence 9998 65555555 78889999999763 358999999999999999998 689999
Q ss_pred ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCC
Q 048511 219 SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEK 298 (351)
Q Consensus 219 ~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg 298 (351)
.+|..+|.+++|+|.|+||+++.+|+++++||+++.+ +......|.+-+++++|+. +..++++|+-|.
T Consensus 331 ~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~----------cmk~~~ah~hfvt~lDfh~--~~p~VvTGsVdq 398 (406)
T KOG0295|consen 331 VGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ----------CMKTLEAHEHFVTSLDFHK--TAPYVVTGSVDQ 398 (406)
T ss_pred ecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce----------eeeccCCCcceeEEEecCC--CCceEEeccccc
Confidence 9999999999999999999999999999999999887 5666668999999999998 788999999999
Q ss_pred eEEEEec
Q 048511 299 VARVFEA 305 (351)
Q Consensus 299 ~v~vw~~ 305 (351)
.+++|.-
T Consensus 399 t~KvwEc 405 (406)
T KOG0295|consen 399 TVKVWEC 405 (406)
T ss_pred eeeeeec
Confidence 9999963
No 9
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.4e-38 Score=274.22 Aligned_cols=206 Identities=19% Similarity=0.318 Sum_probs=189.2
Q ss_pred EEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCc
Q 048511 22 ACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSS 101 (351)
Q Consensus 22 ~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 101 (351)
..++.||.++|..+.|+ |+.++|+++|.|+++|+|.+.+..++
T Consensus 444 ~~~L~GH~GPVyg~sFs--------Pd~rfLlScSED~svRLWsl~t~s~~----------------------------- 486 (707)
T KOG0263|consen 444 SRTLYGHSGPVYGCSFS--------PDRRFLLSCSEDSSVRLWSLDTWSCL----------------------------- 486 (707)
T ss_pred eEEeecCCCceeeeeec--------ccccceeeccCCcceeeeecccceeE-----------------------------
Confidence 45688999999999999 88999999999999999999986544
Q ss_pred eeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEE
Q 048511 102 YQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGG 181 (351)
Q Consensus 102 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i 181 (351)
-.++||..+|+++.|+ |.|-+ |||+|.|++.++|.... ....+.+. +|-..|.|+
T Consensus 487 ------V~y~GH~~PVwdV~F~------P~GyY------Fatas~D~tArLWs~d~--~~PlRifa-----ghlsDV~cv 541 (707)
T KOG0263|consen 487 ------VIYKGHLAPVWDVQFA------PRGYY------FATASHDQTARLWSTDH--NKPLRIFA-----GHLSDVDCV 541 (707)
T ss_pred ------EEecCCCcceeeEEec------CCceE------EEecCCCceeeeeeccc--CCchhhhc-----ccccccceE
Confidence 2356899999999999 67888 99999999999999988 55555555 899999999
Q ss_pred EEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCc
Q 048511 182 HWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGE 261 (351)
Q Consensus 182 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 261 (351)
.|+|+..|+++|+.|.++++||..++ ..++.+.+|.++|.+++|||+|++|++|+.|+.|.+||+.++.
T Consensus 542 ~FHPNs~Y~aTGSsD~tVRlWDv~~G-----~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~------ 610 (707)
T KOG0263|consen 542 SFHPNSNYVATGSSDRTVRLWDVSTG-----NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS------ 610 (707)
T ss_pred EECCcccccccCCCCceEEEEEcCCC-----cEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc------
Confidence 99999999999999999999999998 5689999999999999999999999999999999999999987
Q ss_pred cceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 262 NSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 262 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
.+..+.+|.+.|.++.|+. +|..||+|+.|..|++||+.
T Consensus 611 ----~v~~l~~Ht~ti~SlsFS~--dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 611 ----LVKQLKGHTGTIYSLSFSR--DGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred ----chhhhhcccCceeEEEEec--CCCEEEecCCCCeEEEEEch
Confidence 7888889999999999999 99999999999999999976
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7e-36 Score=231.67 Aligned_cols=259 Identities=15% Similarity=0.239 Sum_probs=214.6
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCC--c---cccee
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALR--G---SSANT 75 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~--~---~~~~~ 75 (351)
++|.||.+.|||..+ . ..++.+.--...|..++|+ |.++++|.|+.|....||++.+. + .+...
T Consensus 72 SaSqDGklIvWDs~T-t--nK~haipl~s~WVMtCA~s--------PSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~ 140 (343)
T KOG0286|consen 72 SASQDGKLIVWDSFT-T--NKVHAIPLPSSWVMTCAYS--------PSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRE 140 (343)
T ss_pred eeccCCeEEEEEccc-c--cceeEEecCceeEEEEEEC--------CCCCeEEecCcCceeEEEecccccccccceeeee
Confidence 578999999999888 4 2345566668899999999 88999999999999999999855 2 12223
Q ss_pred ecccccceeeeEeeecCCeEEecCCceeEEE--------EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC
Q 048511 76 QSTYRKEVISLASYIEGPVLVAGSSSYQVSV--------ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD 147 (351)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d 147 (351)
...+..-+.++.|-. ...|++++.+...-+ ...+.+|.+.|.++.++| .+++. +++|+-|
T Consensus 141 l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p-----~~~nt------FvSg~cD 208 (343)
T KOG0286|consen 141 LAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSP-----SDGNT------FVSGGCD 208 (343)
T ss_pred ecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCC-----CCCCe------EEecccc
Confidence 344455556666666 555666666655544 345889999999999996 47888 9999999
Q ss_pred CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEE
Q 048511 148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD 227 (351)
Q Consensus 148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~ 227 (351)
+..++||++. +.+++.|. +|+..|.+++|.|+|.-+++|+.|++.++||++..+. -.++.-..-..+|++
T Consensus 209 ~~aklWD~R~--~~c~qtF~-----ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~---~a~ys~~~~~~gitS 278 (343)
T KOG0286|consen 209 KSAKLWDVRS--GQCVQTFE-----GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE---LAVYSHDSIICGITS 278 (343)
T ss_pred cceeeeeccC--cceeEeec-----ccccccceEEEccCCCeeeecCCCceeEEEeecCCcE---EeeeccCcccCCcee
Confidence 9999999999 88888887 9999999999999999999999999999999998642 122222233458999
Q ss_pred EEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511 228 ISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE 304 (351)
Q Consensus 228 v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~ 304 (351)
++||..|++|++|..|.++.+||.-.++ .+..+.+|...|+|+..+| ||-.+++|+-|..+|||.
T Consensus 279 v~FS~SGRlLfagy~d~~c~vWDtlk~e----------~vg~L~GHeNRvScl~~s~--DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 279 VAFSKSGRLLFAGYDDFTCNVWDTLKGE----------RVGVLAGHENRVSCLGVSP--DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEEcccccEEEeeecCCceeEeeccccc----------eEEEeeccCCeeEEEEECC--CCcEEEecchhHheeecC
Confidence 9999999999999999999999997776 6777789999999999999 999999999999999994
No 11
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-35 Score=228.27 Aligned_cols=260 Identities=23% Similarity=0.415 Sum_probs=209.4
Q ss_pred eEEEEeeeecCCceeEEEeeCCcccCCCCC-ccEEEEeeCCCcEEEEecCCCc---ccceeecccccceeeeEeeecCCe
Q 048511 19 FVRACELKGHTDWIRSLDFSLPVCTSGEAI-SILLVSSSQDKVIRIWKLALRG---SSANTQSTYRKEVISLASYIEGPV 94 (351)
Q Consensus 19 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 94 (351)
+..+..+++|.+.|..++|+ |. |..|||||.|+.||+|+...+. +...+...+...+++++|+|.|++
T Consensus 4 l~~~~~~~gh~~r~W~~awh--------p~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~ 75 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWH--------PGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRY 75 (312)
T ss_pred ceeEEeecCCCCcEEEEEec--------cCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcE
Confidence 45678899999999999999 55 7899999999999999998532 233344556788999999999999
Q ss_pred EEecCCceeE----------EEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCC-CcceE
Q 048511 95 LVAGSSSYQV----------SVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKT-TGIWM 163 (351)
Q Consensus 95 l~~~~~~~~~----------~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~ 163 (351)
|++++-+... .+...+.||...|.|++|+ .+|++ ||+++.|+.|-||.+... +-.+.
T Consensus 76 La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws------~sG~~------LATCSRDKSVWiWe~deddEfec~ 143 (312)
T KOG0645|consen 76 LASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWS------ASGNY------LATCSRDKSVWIWEIDEDDEFECI 143 (312)
T ss_pred EEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEc------CCCCE------EEEeeCCCeEEEEEecCCCcEEEE
Confidence 9998765544 5566789999999999999 89999 999999999999999852 12233
Q ss_pred EEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCC
Q 048511 164 NVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD 243 (351)
Q Consensus 164 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d 243 (351)
..+ ..|...|..+.|+|...+|+++++|.+|++|+-... ..+.+++++.+|...|.+++|+|.|..|++++.|
T Consensus 144 aVL-----~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d--ddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD 216 (312)
T KOG0645|consen 144 AVL-----QEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD--DDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDD 216 (312)
T ss_pred eee-----ccccccccEEEEcCCcceeEEeccCCeEEEEeecCC--CCeeEEEEecCccceEEEEEecCCCceEEEecCC
Confidence 333 488999999999999999999999999999988732 3378999999999999999999999999999999
Q ss_pred CcEEEEcCCCcccccc--------------------------------CccceEEec-cccccccceeEEEEeeeCCCcE
Q 048511 244 QTTRVFAPWKNVASLM--------------------------------GENSWHEVA-RPQVHGHDINCVTIIQGKGNHR 290 (351)
Q Consensus 244 g~i~vwd~~~~~~~~~--------------------------------~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~ 290 (351)
++++||.....-.... ....|+.+. ....|+..|++++|.| ....+
T Consensus 217 ~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p-~~~~~ 295 (312)
T KOG0645|consen 217 GTVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNP-KVSNR 295 (312)
T ss_pred cceEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcC-CCCCc
Confidence 9999998432110000 001122221 3346788899999999 33789
Q ss_pred EEEecCCCeEEEEecC
Q 048511 291 FVSGADEKVARVFEAP 306 (351)
Q Consensus 291 l~s~~~dg~v~vw~~~ 306 (351)
|++|++||.|++|.+.
T Consensus 296 L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 296 LASGGDDGIVNFWELE 311 (312)
T ss_pred eeecCCCceEEEEEec
Confidence 9999999999999863
No 12
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.4e-37 Score=251.08 Aligned_cols=259 Identities=17% Similarity=0.270 Sum_probs=224.4
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
||+..|.+.+|+... +.....+++|+.+|.+|.|+ .++.+++||+.+|.|++|+.+- ..+......+.
T Consensus 113 tgs~SGEFtLWNg~~---fnFEtilQaHDs~Vr~m~ws--------~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~ 180 (464)
T KOG0284|consen 113 TGSQSGEFTLWNGTS---FNFETILQAHDSPVRTMKWS--------HNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHA 180 (464)
T ss_pred eecccccEEEecCce---eeHHHHhhhhcccceeEEEc--------cCCCEEEEcCCCceEEecccch-hhhHHhhHhhh
Confidence 588899999999865 23334678999999999999 8999999999999999999864 33444444555
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI 152 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i 152 (351)
..+++++|+|+...+++++.++.+++|.. +.||.-.|.+++|+ |...+ +++||.|+.|++
T Consensus 181 eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH------P~kgL------iasgskDnlVKl 248 (464)
T KOG0284|consen 181 EAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH------PTKGL------IASGSKDNLVKL 248 (464)
T ss_pred hhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccC------Cccce------eEEccCCceeEe
Confidence 78999999999999999999999998864 67888899999999 55667 999999999999
Q ss_pred EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511 153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR 232 (351)
Q Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 232 (351)
||.++ +.++.++. .|...|..+.|+|++++|++++.|..+++||+++. +.+..+++|...|+++.|+|
T Consensus 249 WDprS--g~cl~tlh-----~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m-----kEl~~~r~Hkkdv~~~~WhP 316 (464)
T KOG0284|consen 249 WDPRS--GSCLATLH-----GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM-----KELFTYRGHKKDVTSLTWHP 316 (464)
T ss_pred ecCCC--cchhhhhh-----hccceEEEEEEcCCCCeeEEccCCceEEEEehhHh-----HHHHHhhcchhhheeecccc
Confidence 99999 88887776 89999999999999999999999999999999964 55889999999999999999
Q ss_pred -CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 233 -SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 233 -~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
...+|.+|+.||.|..|.+...+ .......+|...|++++|+| =|.+|++|+.|..+++|...
T Consensus 317 ~~~~lftsgg~Dgsvvh~~v~~~~---------p~~~i~~AHd~~iwsl~~hP--lGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 317 LNESLFTSGGSDGSVVHWVVGLEE---------PLGEIPPAHDGEIWSLAYHP--LGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccccceeeccCCCceEEEeccccc---------cccCCCcccccceeeeeccc--cceeEeecCCCcceeeeccC
Confidence 55788999999999999987433 12334568999999999999 89999999999999999843
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-35 Score=226.09 Aligned_cols=255 Identities=20% Similarity=0.278 Sum_probs=211.7
Q ss_pred eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc----cceeecccccceeeeEeeecCCe
Q 048511 19 FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS----SANTQSTYRKEVISLASYIEGPV 94 (351)
Q Consensus 19 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 94 (351)
+....++++|++.|+.++.. + .+.+.+++++.|.++.+|++..... ......++...+..++.+++|++
T Consensus 5 l~l~~tl~gh~d~Vt~la~~----~---~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~ 77 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIK----I---KNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNF 77 (315)
T ss_pred heeeeeecCCCceEEEEEee----c---CCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCce
Confidence 45667899999999999998 2 3467999999999999999976533 23344456778899999999999
Q ss_pred EEecCCceeEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEE
Q 048511 95 LVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVV 166 (351)
Q Consensus 95 l~~~~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 166 (351)
.++++.++.+++|.. +.+|...|.+++|+ +|.+. +++|+.|++|++|+... .+..++
T Consensus 78 alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s------~dn~q------ivSGSrDkTiklwnt~g---~ck~t~ 142 (315)
T KOG0279|consen 78 ALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFS------TDNRQ------IVSGSRDKTIKLWNTLG---VCKYTI 142 (315)
T ss_pred EEeccccceEEEEEecCCcEEEEEEecCCceEEEEec------CCCce------eecCCCcceeeeeeecc---cEEEEE
Confidence 999999999988754 77899999999999 78888 99999999999999984 444443
Q ss_pred EeccccccccceEEEEEcCC--CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCC
Q 048511 167 TVGELSHSALGFYGGHWSPD--GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQ 244 (351)
Q Consensus 167 ~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg 244 (351)
. . ..+...|.|++|+|+ ..+|++++.|++|++||+++- +....+.+|.+.++.+++||||.+.++|+.||
T Consensus 143 ~--~-~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-----~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg 214 (315)
T KOG0279|consen 143 H--E-DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-----QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDG 214 (315)
T ss_pred e--c-CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc-----chhhccccccccEEEEEECCCCCEEecCCCCc
Confidence 3 1 122778999999998 679999999999999999996 66888999999999999999999999999999
Q ss_pred cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511 245 TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT 317 (351)
Q Consensus 245 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~ 317 (351)
.+.+||++.++ .+..+ .|...|.+++|+| .++.++...+-.|+|||+. +.++..|+...
T Consensus 215 ~~~LwdL~~~k----------~lysl-~a~~~v~sl~fsp---nrywL~~at~~sIkIwdl~~~~~v~~l~~d~ 274 (315)
T KOG0279|consen 215 EAMLWDLNEGK----------NLYSL-EAFDIVNSLCFSP---NRYWLCAATATSIKIWDLESKAVVEELKLDG 274 (315)
T ss_pred eEEEEEccCCc----------eeEec-cCCCeEeeEEecC---CceeEeeccCCceEEEeccchhhhhhccccc
Confidence 99999999887 33333 5778899999999 4555555566679999987 77777776433
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.2e-35 Score=242.57 Aligned_cols=255 Identities=18% Similarity=0.238 Sum_probs=212.3
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.||.++||+... ..+.+|..|.++|.++.|+ ..|.+|++++.|+++.+||..++...+..... .
T Consensus 252 tG~~~G~~riw~~~G----~l~~tl~~HkgPI~slKWn--------k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~-s 318 (524)
T KOG0273|consen 252 TGSEDGEARIWNKDG----NLISTLGQHKGPIFSLKWN--------KKGTYILSGGVDGTTILWDAHTGTVKQQFEFH-S 318 (524)
T ss_pred EeecCcEEEEEecCc----hhhhhhhccCCceEEEEEc--------CCCCEEEeccCCccEEEEeccCceEEEeeeec-c
Confidence 588999999999987 4567899999999999999 89999999999999999999888765544332 2
Q ss_pred cceeeeEeeecCCeEEecCCceeEEE--------EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSV--------ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI 152 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i 152 (351)
.+...+.|..+ ..+++.+.++.+.+ ..++.+|.++|.++.|+ +.+.+ |+++|.|++++|
T Consensus 319 ~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n------~tg~L------LaS~SdD~Tlki 385 (524)
T KOG0273|consen 319 APALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN------PTGSL------LASCSDDGTLKI 385 (524)
T ss_pred CCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEEC------CCCce------EEEecCCCeeEe
Confidence 23344444443 34555555555533 45688999999999999 78889 999999999999
Q ss_pred EeccCCCcceEEEEEeccccccccceEEEEEcCCC---------CEEEEEeeCCeEEEEEcccCcccCcccccccccccc
Q 048511 153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG---------RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFA 223 (351)
Q Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~---------~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 223 (351)
|.... ......+. .|...|+.+.|+|.+ ..+++++.|++|++||+..+ .++..+..|..
T Consensus 386 Ws~~~--~~~~~~l~-----~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-----v~i~~f~kH~~ 453 (524)
T KOG0273|consen 386 WSMGQ--SNSVHDLQ-----AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-----VPIHTLMKHQE 453 (524)
T ss_pred eecCC--Ccchhhhh-----hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-----ceeEeeccCCC
Confidence 99877 55555555 899999999999964 47899999999999999998 78999999999
Q ss_pred cEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEE
Q 048511 224 AVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVF 303 (351)
Q Consensus 224 ~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw 303 (351)
+|++++|+|+|+++|+|+.||.|.+|+++.++ .+....+ ...|..++|+. +|.+|..+-.|+.+.+-
T Consensus 454 pVysvafS~~g~ylAsGs~dg~V~iws~~~~~----------l~~s~~~-~~~Ifel~Wn~--~G~kl~~~~sd~~vcvl 520 (524)
T KOG0273|consen 454 PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK----------LVKSYQG-TGGIFELCWNA--AGDKLGACASDGSVCVL 520 (524)
T ss_pred ceEEEEecCCCcEEEecCCCCeeEeccccchh----------eeEeecC-CCeEEEEEEcC--CCCEEEEEecCCCceEE
Confidence 99999999999999999999999999998887 4544443 34599999999 89999999999999998
Q ss_pred ecC
Q 048511 304 EAP 306 (351)
Q Consensus 304 ~~~ 306 (351)
|+.
T Consensus 521 dlr 523 (524)
T KOG0273|consen 521 DLR 523 (524)
T ss_pred Eec
Confidence 864
No 15
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.8e-35 Score=253.54 Aligned_cols=311 Identities=48% Similarity=0.859 Sum_probs=255.6
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
.|+.+..|.++.-.. +++..+..+.||.+.|.+++|..+. .+.-+|||+|+|..||||.+.-........
T Consensus 164 ~Ggs~~~v~~~s~~~-d~f~~v~el~GH~DWIrsl~f~~~~-----~~~~~laS~SQD~yIRiW~i~~~~~~~~~~---- 233 (764)
T KOG1063|consen 164 CGGSKFVVDLYSSSA-DSFARVAELEGHTDWIRSLAFARLG-----GDDLLLASSSQDRYIRIWRIVLGDDEDSNE---- 233 (764)
T ss_pred ecCcceEEEEeccCC-cceeEEEEeeccchhhhhhhhhccC-----CCcEEEEecCCceEEEEEEEEecCCccccc----
Confidence 477888899998876 7899999999999999999998321 234589999999999999986544222111
Q ss_pred cceeeeEeeecCCeEEec-CCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCC
Q 048511 81 KEVISLASYIEGPVLVAG-SSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTT 159 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 159 (351)
.......-++...+.+. .-...+.+...+.||.+.|+++.|+ |.+.. |++++.|.++.+|...+..
T Consensus 234 -~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~------p~~~~------LLSASaDksmiiW~pd~~t 300 (764)
T KOG1063|consen 234 -REDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWH------PEGLD------LLSASADKSMIIWKPDENT 300 (764)
T ss_pred -cccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEc------cchhh------heecccCcceEEEecCCcc
Confidence 11112222233333332 3334556667788999999999999 67777 9999999999999999888
Q ss_pred cceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEE
Q 048511 160 GIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLS 239 (351)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s 239 (351)
|.++...+++...+.....+...|+|+++.+++-+..|..++|. +.+...+.....+.+|...|.+|+|+|.|.+|++
T Consensus 301 GiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWk--t~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLs 378 (764)
T KOG1063|consen 301 GIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWK--TKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLS 378 (764)
T ss_pred ceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEe--ccCccceeeccccccccccceeeeecCCCCEEEE
Confidence 89999999999888888899999999999999999999999998 3333446677788899999999999999999999
Q ss_pred EeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhceeecccc
Q 048511 240 VSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLNHATFQ 319 (351)
Q Consensus 240 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~ 319 (351)
.+.|.+-|||-....+ ..|+++.+++.|++.++|++|-+ ....|++|.+...+|+|+.+..+++.++..++.
T Consensus 379 vs~DQTTRlFa~wg~q------~~wHEiaRPQiHGyDl~c~~~vn--~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~ 450 (764)
T KOG1063|consen 379 VSLDQTTRLFARWGRQ------QEWHEIARPQIHGYDLTCLSFVN--EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGK 450 (764)
T ss_pred eccccceeeecccccc------cceeeecccccccccceeeehcc--CCceeeecccceeeeeecCcHHHHHHHHHHhCc
Confidence 9999999999887443 46999999999999999999998 678899999999999999999999999999983
Q ss_pred ccchhhhhHHhHHhhcceeeeccCCCCCee
Q 048511 320 ESSFHEDLQADVQILGANMSALGLSQKPIY 349 (351)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (351)
..... ..+|. |+++|.||||||++|
T Consensus 451 ~~~~~----~~~p~-gA~VpaLGLSnKa~~ 475 (764)
T KOG1063|consen 451 CFKGS----DELPD-GANVPALGLSNKAFF 475 (764)
T ss_pred cccCc----hhccc-ccccccccccCCCCc
Confidence 33332 35688 999999999999999
No 16
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.6e-35 Score=233.41 Aligned_cols=257 Identities=23% Similarity=0.253 Sum_probs=227.9
Q ss_pred EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511 20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS 99 (351)
Q Consensus 20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (351)
.....+.+|..+|+.+-|+ |+-..+++++.|++|++||..+++....+ .++...+..+.|+..|++++.++
T Consensus 99 ~l~~~l~g~r~~vt~v~~h--------p~~~~v~~as~d~tikv~D~~tg~~e~~L-rGHt~sv~di~~~a~Gk~l~tcS 169 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFH--------PSEALVVSASEDATIKVFDTETGELERSL-RGHTDSVFDISFDASGKYLATCS 169 (406)
T ss_pred Cchhhhhccccceeeeeec--------cCceEEEEecCCceEEEEEccchhhhhhh-hccccceeEEEEecCccEEEecC
Confidence 3456677899999999999 78889999999999999999999884443 44555699999999999999999
Q ss_pred CceeEEEEE---------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecc
Q 048511 100 SSYQVSVES---------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGE 170 (351)
Q Consensus 100 ~~~~~~~~~---------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 170 (351)
.+..+++|. .+.+|...|.++.|. |.+.+ +++++.|.+|+.|++.+ +.++.+++
T Consensus 170 sDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~------P~gd~------ilS~srD~tik~We~~t--g~cv~t~~--- 232 (406)
T KOG0295|consen 170 SDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFL------PLGDH------ILSCSRDNTIKAWECDT--GYCVKTFP--- 232 (406)
T ss_pred CccchhheeHHHHHHHHHHhcCcccceeeEEEE------ecCCe------eeecccccceeEEeccc--ceeEEecc---
Confidence 988776664 467899999999999 67788 99999999999999999 99998887
Q ss_pred ccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC---------------CC
Q 048511 171 LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS---------------SD 235 (351)
Q Consensus 171 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~---------------~~ 235 (351)
+|...+..++.+.||.++++++.|.+|++|-+.++ ++...+..|+-+|.+++|.|. ++
T Consensus 233 --~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~-----~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~ 305 (406)
T KOG0295|consen 233 --GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK-----QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQ 305 (406)
T ss_pred --CchHhEEEEEecCCeeEEEecCCCceEEEEEeccc-----hhhhhhhccccceEEEEecccccCcchhhccCCCCCcc
Confidence 88889999999999999999999999999999987 678889999999999999873 25
Q ss_pred EEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhcee
Q 048511 236 YLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLN 314 (351)
Q Consensus 236 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~ 314 (351)
++.+++.|++|++||+.++. .+.++.+|...|..++|+| .|++|+++.+|+++++||++ +++++++.
T Consensus 306 ~l~s~SrDktIk~wdv~tg~----------cL~tL~ghdnwVr~~af~p--~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 306 VLGSGSRDKTIKIWDVSTGM----------CLFTLVGHDNWVRGVAFSP--GGKYILSCADDKTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred EEEeecccceEEEEeccCCe----------EEEEEecccceeeeeEEcC--CCeEEEEEecCCcEEEEEeccceeeeccC
Confidence 89999999999999999987 7777889999999999999 99999999999999999997 88888888
Q ss_pred ecccccc
Q 048511 315 HATFQES 321 (351)
Q Consensus 315 ~~~~~~~ 321 (351)
.|...-.
T Consensus 374 ah~hfvt 380 (406)
T KOG0295|consen 374 AHEHFVT 380 (406)
T ss_pred CCcceeE
Confidence 7664433
No 17
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=9.2e-35 Score=232.88 Aligned_cols=262 Identities=23% Similarity=0.319 Sum_probs=220.0
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccccee---ec
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANT---QS 77 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~---~~ 77 (351)
+|++||.++|||... +...++.||.++|.+++|.- ++ +....|+++|.|.++++|.++.+...... ..
T Consensus 120 tgsYDg~~riWd~~G----k~~~~~~Ght~~ik~v~~v~---~n--~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~ 190 (423)
T KOG0313|consen 120 TGSYDGTSRIWDLKG----KSIKTIVGHTGPIKSVAWVI---KN--SSSCLFVSASMDQTLRLWKWNVGENKVKALKVCR 190 (423)
T ss_pred EeecCCeeEEEecCC----ceEEEEecCCcceeeeEEEe---cC--CccceEEEecCCceEEEEEecCchhhhhHHhHhc
Confidence 689999999999987 56789999999999999871 11 33447999999999999999887654322 23
Q ss_pred ccccceeeeEeeecCCeEEecCCceeEEEEE---------------------------------eccccccceEEEEecC
Q 048511 78 TYRKEVISLASYIEGPVLVAGSSSYQVSVES---------------------------------LLIGHEDWVYSVQWEP 124 (351)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---------------------------------~~~~h~~~v~~l~~~p 124 (351)
++...+-++...++|..+++|+.+..+.+|. .+.||..+|.++.|++
T Consensus 191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d 270 (423)
T KOG0313|consen 191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD 270 (423)
T ss_pred ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence 6677888999999999999999888776654 3789999999999993
Q ss_pred CCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEc
Q 048511 125 PSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRN 204 (351)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~ 204 (351)
... +.+++.|.+|+.||+.+ +.....+. ....+.++..+|..++|++|+.|..|++||.
T Consensus 271 -------~~v------~yS~SwDHTIk~WDlet--g~~~~~~~------~~ksl~~i~~~~~~~Ll~~gssdr~irl~DP 329 (423)
T KOG0313|consen 271 -------ATV------IYSVSWDHTIKVWDLET--GGLKSTLT------TNKSLNCISYSPLSKLLASGSSDRHIRLWDP 329 (423)
T ss_pred -------CCc------eEeecccceEEEEEeec--ccceeeee------cCcceeEeecccccceeeecCCCCceeecCC
Confidence 445 99999999999999999 66666554 3457899999999999999999999999999
Q ss_pred ccCcccCcccccccccccccEEEEEeecCCC-EEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEe
Q 048511 205 VGVDIDNWQPQKVPSGHFAAVMDISWSRSSD-YLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTII 283 (351)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 283 (351)
+++.. -...+++.+|.+.|.++.|+|... +|++++.|+++++||++..+. ++..+.+|...|.++.|.
T Consensus 330 R~~~g--s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~---------plydI~~h~DKvl~vdW~ 398 (423)
T KOG0313|consen 330 RTGDG--SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA---------PLYDIAGHNDKVLSVDWN 398 (423)
T ss_pred CCCCC--ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC---------cceeeccCCceEEEEecc
Confidence 88743 145678899999999999999654 588999999999999988762 666777899999999998
Q ss_pred eeCCCcEEEEecCCCeEEEEecC
Q 048511 284 QGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 284 ~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
. +.+|++||.|..|+|+.-.
T Consensus 399 ~---~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 399 E---GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred C---CceEEeccCcceEEEeccc
Confidence 6 8899999999999999743
No 18
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.9e-35 Score=250.93 Aligned_cols=283 Identities=18% Similarity=0.252 Sum_probs=222.8
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.||.++|||+.. + .+.+.|+||.+.|.++.|. |+ .....|++|..|+++++||+++..........+.
T Consensus 122 tggaD~~v~VWdi~~-~--~~th~fkG~gGvVssl~F~----~~--~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~ 192 (775)
T KOG0319|consen 122 TGGADGRVKVWDIKN-G--YCTHSFKGHGGVVSSLLFH----PH--WNRWLLASGATDGTVRVWNLNDKRTCLHTMILHK 192 (775)
T ss_pred eccccceEEEEEeeC-C--EEEEEecCCCceEEEEEeC----Cc--cchhheeecCCCceEEEEEcccCchHHHHHHhhh
Confidence 689999999999998 6 6889999999999999999 44 5556899999999999999996655333334445
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEE-----------------------------------------------------
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVE----------------------------------------------------- 107 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~----------------------------------------------------- 107 (351)
+.++++++.+++..+++.+++..+.+|
T Consensus 193 S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~ 272 (775)
T KOG0319|consen 193 SAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKC 272 (775)
T ss_pred hheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchh
Confidence 566677776666655553332221000
Q ss_pred --------------------------------------------------------------------------------
Q 048511 108 -------------------------------------------------------------------------------- 107 (351)
Q Consensus 108 -------------------------------------------------------------------------------- 107 (351)
T Consensus 273 ~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~ 352 (775)
T KOG0319|consen 273 VYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYT 352 (775)
T ss_pred hhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEe
Confidence
Q ss_pred ------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEE
Q 048511 108 ------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGG 181 (351)
Q Consensus 108 ------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i 181 (351)
+.+.||++.|.++... .+|.+ |+||+.|+++++|.+... +.....+....+|...|.++
T Consensus 353 ~~~~~c~ii~GH~e~vlSL~~~------~~g~l------lat~sKD~svilWr~~~~---~~~~~~~a~~~gH~~svgav 417 (775)
T KOG0319|consen 353 LPTSYCQIIPGHTEAVLSLDVW------SSGDL------LATGSKDKSVILWRLNNN---CSKSLCVAQANGHTNSVGAV 417 (775)
T ss_pred cCCCceEEEeCchhheeeeeec------ccCcE------EEEecCCceEEEEEecCC---cchhhhhhhhccccccccee
Confidence 0156788888888844 46667 999999999999998542 12223334456899999999
Q ss_pred EEcCCC-CEEEEEeeCCeEEEEEcccCcccCc----ccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccc
Q 048511 182 HWSPDG-RSILAHGYGGAFHLWRNVGVDIDNW----QPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVA 256 (351)
Q Consensus 182 ~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~----~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~ 256 (351)
+++..+ .++++++.|.++++|++...+...+ ++..+...|...|++|+.+|+.+++||||.|++.+||+++...
T Consensus 418 a~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~- 496 (775)
T KOG0319|consen 418 AGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR- 496 (775)
T ss_pred eecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce-
Confidence 997655 5899999999999999976433222 2233556799999999999999999999999999999998655
Q ss_pred cccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecccc
Q 048511 257 SLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATFQ 319 (351)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~ 319 (351)
....+.+|...|+|+.|++ ..+.++++|.|++|+||.++ ..++++|.+|+..
T Consensus 497 ---------l~~vLsGH~RGvw~V~Fs~--~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~a 549 (775)
T KOG0319|consen 497 ---------LLGVLSGHTRGVWCVSFSK--NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSA 549 (775)
T ss_pred ---------EEEEeeCCccceEEEEecc--ccceeEeccCCceEEEEEeccceeeeeecCccce
Confidence 7778889999999999999 88999999999999999997 8999999988753
No 19
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.8e-35 Score=233.60 Aligned_cols=255 Identities=18% Similarity=0.254 Sum_probs=210.6
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|..|++|+|||..+ +.++..+.||++.|.|+.|. .+.+++|+.|.+|++||+++++++.... .+.
T Consensus 212 SGlrDnTikiWD~n~---~~c~~~L~GHtGSVLCLqyd----------~rviisGSSDsTvrvWDv~tge~l~tli-hHc 277 (499)
T KOG0281|consen 212 SGLRDNTIKIWDKNS---LECLKILTGHTGSVLCLQYD----------ERVIVSGSSDSTVRVWDVNTGEPLNTLI-HHC 277 (499)
T ss_pred cccccCceEEecccc---HHHHHhhhcCCCcEEeeecc----------ceEEEecCCCceEEEEeccCCchhhHHh-hhc
Confidence 588999999999877 36788999999999999998 5699999999999999999998876544 233
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEE-----------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCe
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVES-----------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT 149 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~ 149 (351)
..++.+.|+ +.++++++.+..+.+|. .+.||...|+.+.|+ .++ +++++.|.+
T Consensus 278 eaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--------~ky------IVsASgDRT 341 (499)
T KOG0281|consen 278 EAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--------DKY------IVSASGDRT 341 (499)
T ss_pred ceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--------cce------EEEecCCce
Confidence 455555553 56777777777777765 478999999999998 247 999999999
Q ss_pred EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEE
Q 048511 150 MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDIS 229 (351)
Q Consensus 150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~ 229 (351)
|++|++.+ ++++.++. +|...|-|+.+ .++++++|+.|.+|++||+..+ .+++.+++|+.-|.++.
T Consensus 342 ikvW~~st--~efvRtl~-----gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G-----~cLRvLeGHEeLvRciR 407 (499)
T KOG0281|consen 342 IKVWSTST--CEFVRTLN-----GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG-----ACLRVLEGHEELVRCIR 407 (499)
T ss_pred EEEEeccc--eeeehhhh-----cccccceehhc--cCeEEEecCCCceEEEEecccc-----HHHHHHhchHHhhhhee
Confidence 99999999 88888776 88888888876 6899999999999999999998 78999999999999999
Q ss_pred eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 230 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
|. .+.+++|+.||.|+|||+.......... .--++.....|.+.|..+.| |...|++++.|.+|.|||..
T Consensus 408 Fd--~krIVSGaYDGkikvWdl~aaldpra~~-~~~Cl~~lv~hsgRVFrLQF----D~fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 408 FD--NKRIVSGAYDGKIKVWDLQAALDPRAPA-STLCLRTLVEHSGRVFRLQF----DEFQIISSSHDDTILIWDFL 477 (499)
T ss_pred ec--CceeeeccccceEEEEecccccCCcccc-cchHHHhhhhccceeEEEee----cceEEEeccCCCeEEEEEcC
Confidence 95 5689999999999999998765321000 11134455578888999999 45789999999999999965
No 20
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.5e-33 Score=214.13 Aligned_cols=242 Identities=19% Similarity=0.269 Sum_probs=206.5
Q ss_pred CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511 4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV 83 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 83 (351)
....||+||+.+ ++..++.++.+|+..|+++.|. .+|++++|||.||+++|||++.......... ..++
T Consensus 59 ~~qhvRlyD~~S-~np~Pv~t~e~h~kNVtaVgF~--------~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~--~spV 127 (311)
T KOG0315|consen 59 GNQHVRLYDLNS-NNPNPVATFEGHTKNVTAVGFQ--------CDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH--NSPV 127 (311)
T ss_pred cCCeeEEEEccC-CCCCceeEEeccCCceEEEEEe--------ecCeEEEecCCCceEEEEeccCcccchhccC--CCCc
Confidence 456799999999 7777999999999999999999 8999999999999999999998555444433 4689
Q ss_pred eeeEeeecCCeEEecCCceeEEEEEecc---------ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEe
Q 048511 84 ISLASYIEGPVLVAGSSSYQVSVESLLI---------GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQ 154 (351)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd 154 (351)
.++..+|+...|++++..+.+.+|..-. .-...|.++... +||.+ ++.+...|..++|+
T Consensus 128 n~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~------~dgsm------l~a~nnkG~cyvW~ 195 (311)
T KOG0315|consen 128 NTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVM------PDGSM------LAAANNKGNCYVWR 195 (311)
T ss_pred ceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEc------CCCcE------EEEecCCccEEEEE
Confidence 9999999999999999999999987532 224578999999 89999 99999999999999
Q ss_pred ccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCC
Q 048511 155 PEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSS 234 (351)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~ 234 (351)
+-... ......++..+..|+..+..+.++|++++|++++.|.+++||+.++- ++....+.+|...++..+||.||
T Consensus 196 l~~~~-~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~----~kle~~l~gh~rWvWdc~FS~dg 270 (311)
T KOG0315|consen 196 LLNHQ-TASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF----FKLELVLTGHQRWVWDCAFSADG 270 (311)
T ss_pred ccCCC-ccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc----eeeEEEeecCCceEEeeeeccCc
Confidence 97621 11122233445689999999999999999999999999999999875 25677888999999999999999
Q ss_pred CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEe
Q 048511 235 DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTII 283 (351)
Q Consensus 235 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 283 (351)
+||+|++.|+.+++||+..++ .+....+|.....|++..
T Consensus 271 ~YlvTassd~~~rlW~~~~~k----------~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 271 EYLVTASSDHTARLWDLSAGK----------EVRQYQGHHKAAVCVALN 309 (311)
T ss_pred cEEEecCCCCceeecccccCc----------eeeecCCcccccEEEEee
Confidence 999999999999999999988 777788888888787764
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1e-33 Score=232.70 Aligned_cols=271 Identities=17% Similarity=0.219 Sum_probs=224.0
Q ss_pred CCCCCceEEEEEccC-CCceEEEEeee------ec----CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCC
Q 048511 1 MGGLDNKIHLYRGQR-TGKFVRACELK------GH----TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALR 69 (351)
Q Consensus 1 tg~~dg~i~vw~~~~-~~~~~~~~~~~------~h----~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~ 69 (351)
+|+.|-+.++|++.. .........|+ ++ ...|++++|+ .+|..||+|+.||.+++|+....
T Consensus 196 sg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn--------~~G~~LatG~~~G~~riw~~~G~ 267 (524)
T KOG0273|consen 196 SGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWN--------NDGTLLATGSEDGEARIWNKDGN 267 (524)
T ss_pred ccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEec--------CCCCeEEEeecCcEEEEEecCch
Confidence 467788899999874 11111111111 22 2479999999 89999999999999999998754
Q ss_pred cccceeecccccceeeeEeeecCCeEEecCCceeEEEEEecc--------ccccceEEEEecCCCCCCCCCcccCCCcee
Q 048511 70 GSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLI--------GHEDWVYSVQWEPPSTAPSDGVSCQQPSSI 141 (351)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l 141 (351)
. ......+..++.++.|+..|.+|++++.++.+.+|.... -|..+-..+.|- .+ .- |
T Consensus 268 l--~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~------~~-~~------F 332 (524)
T KOG0273|consen 268 L--ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ------SN-DE------F 332 (524)
T ss_pred h--hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe------cC-ce------E
Confidence 3 233445577999999999999999999999887776543 355555667776 23 33 8
Q ss_pred EEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccc
Q 048511 142 LSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH 221 (351)
Q Consensus 142 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~ 221 (351)
++++.|+.|+++.+.. ..++.++. +|.+.|.++.|+|.+.+|++++.|++++||..... .....+++|
T Consensus 333 ~ts~td~~i~V~kv~~--~~P~~t~~-----GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-----~~~~~l~~H 400 (524)
T KOG0273|consen 333 ATSSTDGCIHVCKVGE--DRPVKTFI-----GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-----NSVHDLQAH 400 (524)
T ss_pred eecCCCceEEEEEecC--CCcceeee-----cccCceEEEEECCCCceEEEecCCCeeEeeecCCC-----cchhhhhhh
Confidence 9999999999999988 77777777 89999999999999999999999999999998776 568899999
Q ss_pred cccEEEEEeecCC---------CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEE
Q 048511 222 FAAVMDISWSRSS---------DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFV 292 (351)
Q Consensus 222 ~~~v~~v~~sp~~---------~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 292 (351)
...|..+.|+|.| ..+++++.|++|++||+..+. ++..+..|..+|++++|+| +++++|
T Consensus 401 skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv----------~i~~f~kH~~pVysvafS~--~g~ylA 468 (524)
T KOG0273|consen 401 SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV----------PIHTLMKHQEPVYSVAFSP--NGRYLA 468 (524)
T ss_pred ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc----------eeEeeccCCCceEEEEecC--CCcEEE
Confidence 9999999999964 578999999999999998887 7888889999999999999 999999
Q ss_pred EecCCCeEEEEecC-chhhhceeeccc
Q 048511 293 SGADEKVARVFEAP-LSFLKTLNHATF 318 (351)
Q Consensus 293 s~~~dg~v~vw~~~-~~~~~~~~~~~~ 318 (351)
+|+.||.|.+|+.+ ++.++++.+-..
T Consensus 469 sGs~dg~V~iws~~~~~l~~s~~~~~~ 495 (524)
T KOG0273|consen 469 SGSLDGCVHIWSTKTGKLVKSYQGTGG 495 (524)
T ss_pred ecCCCCeeEeccccchheeEeecCCCe
Confidence 99999999999988 888887776554
No 22
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.8e-34 Score=237.92 Aligned_cols=261 Identities=15% Similarity=0.195 Sum_probs=221.7
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.|+.|+||++...+ .+++++.+|..+|..++|+ .+|..|+|+|.|+.|++||++++++.......
T Consensus 232 S~gmD~~vklW~vy~~~--~~lrtf~gH~k~Vrd~~~s--------~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~-- 299 (503)
T KOG0282|consen 232 SGGMDGLVKLWNVYDDR--RCLRTFKGHRKPVRDASFN--------NCGTSFLSASFDRFLKLWDTETGQVLSRFHLD-- 299 (503)
T ss_pred ecCCCceEEEEEEecCc--ceehhhhcchhhhhhhhcc--------ccCCeeeeeecceeeeeeccccceEEEEEecC--
Confidence 58999999999998744 7899999999999999999 88999999999999999999999988766654
Q ss_pred cceeeeEeeecC-CeEEecCCceeEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEE
Q 048511 81 KEVISLASYIEG-PVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMM 151 (351)
Q Consensus 81 ~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~ 151 (351)
..+.++.|+|++ +.+++|..++.+..|.. +..|-+.|..+.|. +++.. +++.+.|+.++
T Consensus 300 ~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~------~~g~r------FissSDdks~r 367 (503)
T KOG0282|consen 300 KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFV------DEGRR------FISSSDDKSVR 367 (503)
T ss_pred CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEc------cCCce------EeeeccCccEE
Confidence 477889999998 78889999999887764 55688999999999 78888 99999999999
Q ss_pred EEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccccc--ccEEEEE
Q 048511 152 IWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHF--AAVMDIS 229 (351)
Q Consensus 152 iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~--~~v~~v~ 229 (351)
||+.+. +..++.+.. .......++..+|+++++++-+.|+.|.+|.+...-. ....+.+.+|. +.-..+.
T Consensus 368 iWe~~~--~v~ik~i~~----~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r--~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 368 IWENRI--PVPIKNIAD----PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR--LNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred EEEcCC--Cccchhhcc----hhhccCcceecCCCCCeehhhccCceEEEEecccccc--cCHhhhhcceeccCceeeEE
Confidence 999987 544433321 2223466899999999999999999999998754321 24456777875 4456789
Q ss_pred eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511 230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE 304 (351)
Q Consensus 230 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~ 304 (351)
|||||.+|++|+.||.+.+||.++.+ .+..+++|..++..+.|+| .....+|+++.||.|++|+
T Consensus 440 fSpDG~~l~SGdsdG~v~~wdwkt~k----------l~~~lkah~~~ci~v~wHP-~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 440 FSPDGRTLCSGDSDGKVNFWDWKTTK----------LVSKLKAHDQPCIGVDWHP-VEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EcCCCCeEEeecCCccEEEeechhhh----------hhhccccCCcceEEEEecC-CCcceeEecccCceeEecC
Confidence 99999999999999999999998877 7888889999999999999 4577899999999999996
No 23
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=8.9e-34 Score=225.76 Aligned_cols=250 Identities=17% Similarity=0.208 Sum_probs=218.2
Q ss_pred eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEec
Q 048511 19 FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAG 98 (351)
Q Consensus 19 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 98 (351)
++..+.+++|.+.|.|+++. |...+|+||+.|++|+|||+.+++....+ .++-..+..+++++-..+++++
T Consensus 141 wKl~rVi~gHlgWVr~vavd--------P~n~wf~tgs~DrtikIwDlatg~Lkltl-tGhi~~vr~vavS~rHpYlFs~ 211 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVD--------PGNEWFATGSADRTIKIWDLATGQLKLTL-TGHIETVRGVAVSKRHPYLFSA 211 (460)
T ss_pred ceehhhhhhccceEEEEeeC--------CCceeEEecCCCceeEEEEcccCeEEEee-cchhheeeeeeecccCceEEEe
Confidence 46677889999999999999 77899999999999999999998765443 3445678899999999999999
Q ss_pred CCceeEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecc
Q 048511 99 SSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGE 170 (351)
Q Consensus 99 ~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 170 (351)
+.+..+++|.. +.||-..|+|++.+ |.-.. |++|+.|.++++||+++ ...+..+.
T Consensus 212 gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lh------PTldv------l~t~grDst~RvWDiRt--r~~V~~l~--- 274 (460)
T KOG0285|consen 212 GEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLH------PTLDV------LVTGGRDSTIRVWDIRT--RASVHVLS--- 274 (460)
T ss_pred cCCCeeEEEechhhhhHHHhccccceeEEEecc------cccee------EEecCCcceEEEeeecc--cceEEEec---
Confidence 99999998864 66899999999999 56667 99999999999999999 66666665
Q ss_pred ccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEc
Q 048511 171 LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFA 250 (351)
Q Consensus 171 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd 250 (351)
+|..+|.++.+.|....+++|+.|++|++||++.+ +...++..|...|++++.+|....+|+++.| .|+-|+
T Consensus 275 --GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~ag-----kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~ 346 (460)
T KOG0285|consen 275 --GHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAG-----KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWK 346 (460)
T ss_pred --CCCCcceeEEeecCCCceEEecCCceEEEeeeccC-----ceeEeeecccceeeEEecCCchhhhhccCCc-cceecc
Confidence 99999999999998889999999999999999998 4577888899999999999999999999887 689999
Q ss_pred CCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceee
Q 048511 251 PWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNH 315 (351)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~ 315 (351)
+..+. .+..+.+|..-|++++... ..++++|++.|.+.+||.+ +...+.++.
T Consensus 347 ~p~g~----------f~~nlsgh~~iintl~~ns---D~v~~~G~dng~~~fwdwksg~nyQ~~~t 399 (460)
T KOG0285|consen 347 LPEGE----------FLQNLSGHNAIINTLSVNS---DGVLVSGGDNGSIMFWDWKSGHNYQRGQT 399 (460)
T ss_pred CCccc----------hhhccccccceeeeeeecc---CceEEEcCCceEEEEEecCcCcccccccc
Confidence 98887 5666788999999999987 5689999999999999976 665555543
No 24
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2e-33 Score=224.20 Aligned_cols=261 Identities=21% Similarity=0.254 Sum_probs=217.1
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
||+.|..-.+|+..+ +. ....+.+|.+.|+++.|+ .++.+||||+.+|.|+||+..++.....+. ...
T Consensus 81 TGGgDD~AflW~~~~-ge--~~~eltgHKDSVt~~~Fs--------hdgtlLATGdmsG~v~v~~~stg~~~~~~~-~e~ 148 (399)
T KOG0296|consen 81 TGGGDDLAFLWDIST-GE--FAGELTGHKDSVTCCSFS--------HDGTLLATGDMSGKVLVFKVSTGGEQWKLD-QEV 148 (399)
T ss_pred ecCCCceEEEEEccC-Cc--ceeEecCCCCceEEEEEc--------cCceEEEecCCCccEEEEEcccCceEEEee-ccc
Confidence 689999999999999 74 567889999999999999 899999999999999999999987766554 234
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEE--------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVE--------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI 152 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i 152 (351)
..+.-+.|+|.+.+|++|..++.+-+| +.+.||..++++=.|. |+|+. ++++..||+|++
T Consensus 149 ~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~------pdGKr------~~tgy~dgti~~ 216 (399)
T KOG0296|consen 149 EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFI------PDGKR------ILTGYDDGTIIV 216 (399)
T ss_pred CceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccccc------CCCce------EEEEecCceEEE
Confidence 578889999999999999999988554 4578999999999999 78999 999999999999
Q ss_pred EeccCCCcceEEEEEecc----------------------------------------------ccccccceEEEEE---
Q 048511 153 WQPEKTTGIWMNVVTVGE----------------------------------------------LSHSALGFYGGHW--- 183 (351)
Q Consensus 153 wd~~~~~~~~~~~~~~~~----------------------------------------------~~~~~~~i~~i~~--- 183 (351)
||+.+ +.++..+.-.+ ...+...+.|+.+
T Consensus 217 Wn~kt--g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ 294 (399)
T KOG0296|consen 217 WNPKT--GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPS 294 (399)
T ss_pred EecCC--CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccc
Confidence 99998 55554443000 0012222233333
Q ss_pred cCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccc
Q 048511 184 SPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENS 263 (351)
Q Consensus 184 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 263 (351)
+..-.+.|+|+.||+|.|||+.... ++..-.|...|..+.|-+ ..+|++++.||.|+.||.+++.
T Consensus 295 ss~lpL~A~G~vdG~i~iyD~a~~~------~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~-------- 359 (399)
T KOG0296|consen 295 SSKLPLAACGSVDGTIAIYDLAAST------LRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQ-------- 359 (399)
T ss_pred ccccchhhcccccceEEEEecccch------hheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccc--------
Confidence 3344577889999999999998852 445556889999999999 6899999999999999999998
Q ss_pred eEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 264 WHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
....+.+|...|.+++++| +.++++++|.|+..+||+.+
T Consensus 360 --l~~~y~GH~~~Il~f~ls~--~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 360 --LKFTYTGHQMGILDFALSP--QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred --eEEEEecCchheeEEEEcC--CCcEEEEecCCCeEEEEecC
Confidence 7777889999999999999 99999999999999999864
No 25
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-33 Score=244.14 Aligned_cols=255 Identities=20% Similarity=0.247 Sum_probs=221.3
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccc---ceeecc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSS---ANTQST 78 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~---~~~~~~ 78 (351)
+++.+.+|+|+..+ -. ...+.||++.|.++... .+|.+|+|||.|.++++|.+++.... ......
T Consensus 342 ATNs~~lr~y~~~~-~~---c~ii~GH~e~vlSL~~~--------~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~g 409 (775)
T KOG0319|consen 342 ATNSPELRLYTLPT-SY---CQIIPGHTEAVLSLDVW--------SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANG 409 (775)
T ss_pred EeCCCceEEEecCC-Cc---eEEEeCchhheeeeeec--------ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcc
Confidence 56778899998877 32 23788999999999955 46789999999999999999554432 223344
Q ss_pred cccceeeeEeeecC-CeEEecCCceeEEEEEe-----------------ccccccceEEEEecCCCCCCCCCcccCCCce
Q 048511 79 YRKEVISLASYIEG-PVLVAGSSSYQVSVESL-----------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSS 140 (351)
Q Consensus 79 ~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~-----------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~ 140 (351)
+...+.+++++..+ .++++++.+..+++|.. ...|.+.|+|++++ |+..+
T Consensus 410 H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia------~ndkL------ 477 (775)
T KOG0319|consen 410 HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA------PNDKL------ 477 (775)
T ss_pred cccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEec------CCCce------
Confidence 56677788886655 47778888988887753 23689999999999 67888
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG 220 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 220 (351)
+||||.|++.+||+++. .....++. +|...++++.|+|..+.+++++.|++|+||.+.+. .+++++.+
T Consensus 478 iAT~SqDktaKiW~le~--~~l~~vLs-----GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f-----SClkT~eG 545 (775)
T KOG0319|consen 478 IATGSQDKTAKIWDLEQ--LRLLGVLS-----GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF-----SCLKTFEG 545 (775)
T ss_pred EEecccccceeeecccC--ceEEEEee-----CCccceEEEEeccccceeEeccCCceEEEEEeccc-----eeeeeecC
Confidence 99999999999999996 77777776 99999999999999999999999999999999995 78999999
Q ss_pred ccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeE
Q 048511 221 HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVA 300 (351)
Q Consensus 221 ~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v 300 (351)
|...|..+.|-.++..|++++.||-|++|++.+.. +...+..|...|++++.++ ...++++|+.||.|
T Consensus 546 H~~aVlra~F~~~~~qliS~~adGliKlWnikt~e----------C~~tlD~H~DrvWaL~~~~--~~~~~~tgg~Dg~i 613 (775)
T KOG0319|consen 546 HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE----------CEMTLDAHNDRVWALSVSP--LLDMFVTGGGDGRI 613 (775)
T ss_pred ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh----------hhhhhhhccceeEEEeecC--ccceeEecCCCeEE
Confidence 99999999999999999999999999999999988 7888889999999999999 88899999999999
Q ss_pred EEEe
Q 048511 301 RVFE 304 (351)
Q Consensus 301 ~vw~ 304 (351)
.+|.
T Consensus 614 ~~wk 617 (775)
T KOG0319|consen 614 IFWK 617 (775)
T ss_pred EEee
Confidence 9997
No 26
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.3e-34 Score=234.05 Aligned_cols=234 Identities=16% Similarity=0.210 Sum_probs=206.2
Q ss_pred CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEE
Q 048511 29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES 108 (351)
Q Consensus 29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 108 (351)
...|..|.|. |+|+.|++|+..|.+.+|+.... ....+...+...+.++.|++++..+++|+..+.++.|+
T Consensus 96 kc~V~~v~Wt--------PeGRRLltgs~SGEFtLWNg~~f-nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWq 166 (464)
T KOG0284|consen 96 KCPVNVVRWT--------PEGRRLLTGSQSGEFTLWNGTSF-NFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQ 166 (464)
T ss_pred ccceeeEEEc--------CCCceeEeecccccEEEecCcee-eHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecc
Confidence 3489999999 89999999999999999998543 23344556678999999999999999999999999886
Q ss_pred e-------cccc-ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEE
Q 048511 109 L-------LIGH-EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYG 180 (351)
Q Consensus 109 ~-------~~~h-~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~ 180 (351)
. +++| ...|.+++|+ ++... |++++.||+|+|||... ......+. +|.-.|.+
T Consensus 167 pnmnnVk~~~ahh~eaIRdlafS------pnDsk------F~t~SdDg~ikiWdf~~--~kee~vL~-----GHgwdVks 227 (464)
T KOG0284|consen 167 PNMNNVKIIQAHHAEAIRDLAFS------PNDSK------FLTCSDDGTIKIWDFRM--PKEERVLR-----GHGWDVKS 227 (464)
T ss_pred cchhhhHHhhHhhhhhhheeccC------CCCce------eEEecCCCeEEEEeccC--Cchhheec-----cCCCCcce
Confidence 4 3444 4899999999 55566 99999999999999987 44334444 88899999
Q ss_pred EEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccC
Q 048511 181 GHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMG 260 (351)
Q Consensus 181 i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 260 (351)
++|+|....+++++.|..|++||.+++ .++.++.+|...|..+.|+|++++|+++|.|..+++||+++.+
T Consensus 228 vdWHP~kgLiasgskDnlVKlWDprSg-----~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mk----- 297 (464)
T KOG0284|consen 228 VDWHPTKGLIASGSKDNLVKLWDPRSG-----SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMK----- 297 (464)
T ss_pred eccCCccceeEEccCCceeEeecCCCc-----chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhH-----
Confidence 999999999999999999999999998 7899999999999999999999999999999999999998665
Q ss_pred ccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 261 ENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 261 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
++..+++|...++++.|+| -...+|++|+.||.|..|.+.
T Consensus 298 -----El~~~r~Hkkdv~~~~WhP-~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 298 -----ELFTYRGHKKDVTSLTWHP-LNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred -----HHHHhhcchhhheeecccc-ccccceeeccCCCceEEEecc
Confidence 7888899999999999999 467899999999999999976
No 27
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-34 Score=219.09 Aligned_cols=229 Identities=20% Similarity=0.274 Sum_probs=195.4
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+++.||++++||.... -.++..++.|..+|.++.|+ + .+.+.++++|.|++|++|+...++.+
T Consensus 78 ~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn----~---~~r~~~ltsSWD~TiKLW~~~r~~Sv-------- 140 (311)
T KOG0277|consen 78 AASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWN----T---VRRRIFLTSSWDGTIKLWDPNRPNSV-------- 140 (311)
T ss_pred EEecCceEEEeccCCC--CcchhHHHhhhhheEEeccc----c---ccceeEEeeccCCceEeecCCCCcce--------
Confidence 4678999999996652 26888999999999999999 3 56778889999999999999876544
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG 160 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 160 (351)
.++.+|...|+..+|+| ...++ ++++|.|+++++||++.. +
T Consensus 141 ---------------------------~Tf~gh~~~Iy~a~~sp-----~~~nl------fas~Sgd~~l~lwdvr~~-g 181 (311)
T KOG0277|consen 141 ---------------------------QTFNGHNSCIYQAAFSP-----HIPNL------FASASGDGTLRLWDVRSP-G 181 (311)
T ss_pred ---------------------------EeecCCccEEEEEecCC-----CCCCe------EEEccCCceEEEEEecCC-C
Confidence 34688999999999999 66778 999999999999999975 4
Q ss_pred ceEEEEEeccccccccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCC-CEEE
Q 048511 161 IWMNVVTVGELSHSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSS-DYLL 238 (351)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~-~~l~ 238 (351)
+.+. +. .|...|.++.|+. +.+.+++|+.|+.|+.||++.-+ .++..+.+|.-.|+.|+|||.. ..|+
T Consensus 182 k~~~-i~-----ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r----~pl~eL~gh~~AVRkvk~Sph~~~lLa 251 (311)
T KOG0277|consen 182 KFMS-IE-----AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR----TPLFELNGHGLAVRKVKFSPHHASLLA 251 (311)
T ss_pred ceeE-EE-----eccceeEeecccccCCcEEEecCCCceEEEEehhhcc----ccceeecCCceEEEEEecCcchhhHhh
Confidence 4333 44 7788999999998 55688999999999999999876 7789999999999999999964 5789
Q ss_pred EEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511 239 SVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA 305 (351)
Q Consensus 239 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~ 305 (351)
+++.|-+++|||...+.. .+.+...|..-+..+.|++ .+..++|+.+-|+.++||+.
T Consensus 252 SasYDmT~riw~~~~~ds---------~~e~~~~HtEFv~g~Dws~-~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 252 SASYDMTVRIWDPERQDS---------AIETVDHHTEFVCGLDWSL-FDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hccccceEEecccccchh---------hhhhhhccceEEecccccc-ccCceeeecccccceeeecc
Confidence 999999999999986552 4555667888899999998 47889999999999999984
No 28
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-33 Score=227.17 Aligned_cols=262 Identities=18% Similarity=0.218 Sum_probs=224.0
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.|.+..+|++..+.+++...++.+|..+|..+.|+ |+.++|++|+.|..+++||+.++...........
T Consensus 241 saSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wS--------PDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~ 312 (519)
T KOG0293|consen 241 SASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWS--------PDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLG 312 (519)
T ss_pred eccCCceEEEEEEecCcceeeeeeeecccCceEEEEEC--------CCCCeEEecCchHheeeccCCcchhhhhcccCcC
Confidence 58899999999988878888899999999999999999 8899999999999999999999988777766666
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEe-------cccc-ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESL-------LIGH-EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI 152 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~h-~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i 152 (351)
..+.+++|.|||..+++|+.+..+..+.. .++- ...|.+++.. +||+. +++...|..|++
T Consensus 313 ~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait------~Dgk~------vl~v~~d~~i~l 380 (519)
T KOG0293|consen 313 FSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAIT------YDGKY------VLLVTVDKKIRL 380 (519)
T ss_pred CCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEc------CCCcE------EEEEecccceee
Confidence 78889999999999999999988866543 1221 2358999999 89999 999999999999
Q ss_pred EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccccccc--EEEEEe
Q 048511 153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAA--VMDISW 230 (351)
Q Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~--v~~v~~ 230 (351)
++.+. ......+ ....+|++++.+.+++++++.-.+..+++||++.. ..+..+.+|... +-.-||
T Consensus 381 ~~~e~--~~dr~li------se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~-----~lv~kY~Ghkq~~fiIrSCF 447 (519)
T KOG0293|consen 381 YNREA--RVDRGLI------SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN-----KLVRKYFGHKQGHFIIRSCF 447 (519)
T ss_pred echhh--hhhhccc------cccCceeEEEEcCCCcEEEEEcccCeeEEeecchh-----hHHHHhhcccccceEEEecc
Confidence 99987 3333222 34567999999999999999999999999999965 568888888753 333456
Q ss_pred ec-CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 231 SR-SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 231 sp-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
-- +..++++|++|+.|+||+..+++ ++..+.+|...|+|++|+| .+..++|++|+||+||||...
T Consensus 448 gg~~~~fiaSGSED~kvyIWhr~sgk----------ll~~LsGHs~~vNcVswNP-~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 448 GGGNDKFIASGSEDSKVYIWHRISGK----------LLAVLSGHSKTVNCVSWNP-ADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCCCcceEEecCCCceEEEEEccCCc----------eeEeecCCcceeeEEecCC-CCHHHhhccCCCCeEEEecCC
Confidence 53 45789999999999999999988 8888999999999999999 678999999999999999875
No 29
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.3e-33 Score=245.79 Aligned_cols=251 Identities=17% Similarity=0.264 Sum_probs=201.1
Q ss_pred EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEe-eecCCeEEec
Q 048511 20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLAS-YIEGPVLVAG 98 (351)
Q Consensus 20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~ 98 (351)
.+..++..-...++|..|+ +++..||.|-.|..|++|.+...+.. ...... ....+.. +.+-. .-..
T Consensus 369 ic~YT~~nt~~~v~ca~fS--------ddssmlA~Gf~dS~i~~~Sl~p~kl~-~lk~~~--~l~~~d~~sad~~-~~~~ 436 (707)
T KOG0263|consen 369 ICMYTFHNTYQGVTCAEFS--------DDSSMLACGFVDSSVRVWSLTPKKLK-KLKDAS--DLSNIDTESADVD-VDML 436 (707)
T ss_pred EEEEEEEEcCCcceeEeec--------CCcchhhccccccEEEEEecchhhhc-cccchh--hhccccccccchh-hhhc
Confidence 3445555445689999999 88999999999999999999854211 111000 0000000 00000 0000
Q ss_pred CCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccce
Q 048511 99 SSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGF 178 (351)
Q Consensus 99 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i 178 (351)
+ +..-.....+.||.++|....|+ |+.++ |+++|.|+++|+|.+.+ ..++..++ +|..+|
T Consensus 437 D-~~~~~~~~~L~GH~GPVyg~sFs------Pd~rf------LlScSED~svRLWsl~t--~s~~V~y~-----GH~~PV 496 (707)
T KOG0263|consen 437 D-DDSSGTSRTLYGHSGPVYGCSFS------PDRRF------LLSCSEDSSVRLWSLDT--WSCLVIYK-----GHLAPV 496 (707)
T ss_pred c-ccCCceeEEeecCCCceeeeeec------ccccc------eeeccCCcceeeeeccc--ceeEEEec-----CCCcce
Confidence 0 01112234588999999999999 78889 99999999999999999 66766666 999999
Q ss_pred EEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccc
Q 048511 179 YGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASL 258 (351)
Q Consensus 179 ~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~ 258 (351)
+.+.|+|.|-++|+++.|++-++|..... .+++.+.+|-+.|.++.|+|+..|+++||.|.+||+||+.++.
T Consensus 497 wdV~F~P~GyYFatas~D~tArLWs~d~~-----~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~--- 568 (707)
T KOG0263|consen 497 WDVQFAPRGYYFATASHDQTARLWSTDHN-----KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN--- 568 (707)
T ss_pred eeEEecCCceEEEecCCCceeeeeecccC-----CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc---
Confidence 99999999999999999999999999885 7899999999999999999999999999999999999999987
Q ss_pred cCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecccc
Q 048511 259 MGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATFQ 319 (351)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~ 319 (351)
.+..+.+|..+|++++|+| +|.+|++|++||.|++||+. +..+..+.+|++.
T Consensus 569 -------~VRiF~GH~~~V~al~~Sp--~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~t 621 (707)
T KOG0263|consen 569 -------SVRIFTGHKGPVTALAFSP--CGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGT 621 (707)
T ss_pred -------EEEEecCCCCceEEEEEcC--CCceEeecccCCcEEEEEcCCCcchhhhhcccCc
Confidence 6777889999999999999 99999999999999999987 7899999988643
No 30
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.1e-33 Score=235.23 Aligned_cols=254 Identities=17% Similarity=0.208 Sum_probs=223.4
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK 81 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~ 81 (351)
+-.+|.|.|||.++ . ..+..+.-..-+|.+..|. +..+++++|+.|..||||+.++.+.+.... .+..
T Consensus 31 ~LynG~V~IWnyet-q--tmVksfeV~~~PvRa~kfi--------aRknWiv~GsDD~~IrVfnynt~ekV~~Fe-AH~D 98 (794)
T KOG0276|consen 31 ALYNGDVQIWNYET-Q--TMVKSFEVSEVPVRAAKFI--------ARKNWIVTGSDDMQIRVFNYNTGEKVKTFE-AHSD 98 (794)
T ss_pred eeecCeeEEEeccc-c--eeeeeeeecccchhhheee--------eccceEEEecCCceEEEEecccceeeEEee-cccc
Confidence 45689999999998 5 5677888888899999999 889999999999999999999988776554 4567
Q ss_pred ceeeeEeeecCCeEEecCCceeEEEE---------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511 82 EVISLASYIEGPVLVAGSSSYQVSVE---------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI 152 (351)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i 152 (351)
-+++++.+|.-.++++++.+..+++| +++.||+..|.+++|+| .|.+. +|+++-|++|++
T Consensus 99 yIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnP-----kD~nt------FaS~sLDrTVKV 167 (794)
T KOG0276|consen 99 YIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNP-----KDPNT------FASASLDRTVKV 167 (794)
T ss_pred ceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecC-----CCccc------eeeeeccccEEE
Confidence 89999999999999999999888765 56899999999999999 78888 999999999999
Q ss_pred EeccCCCcceEEEEEeccccccccceEEEEEcCCC--CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEe
Q 048511 153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG--RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISW 230 (351)
Q Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~ 230 (351)
|.+.. ..+..++. +|...|.|+++-+.| .+|++|+.|.+|++||..+. +|++++.+|...|..++|
T Consensus 168 Wslgs--~~~nfTl~-----gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-----~CV~TLeGHt~Nvs~v~f 235 (794)
T KOG0276|consen 168 WSLGS--PHPNFTLE-----GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-----SCVQTLEGHTNNVSFVFF 235 (794)
T ss_pred EEcCC--CCCceeee-----ccccCcceEEeccCCCcceEEecCCCceEEEeecchH-----HHHHHhhcccccceEEEe
Confidence 99988 66667766 899999999998754 69999999999999999997 789999999999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEE
Q 048511 231 SRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARV 302 (351)
Q Consensus 231 sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~v 302 (351)
+|.-.++++|++||+++||...+.+ ....+......++|++-.+ +++.++.|.+.|.|.+
T Consensus 236 hp~lpiiisgsEDGTvriWhs~Ty~----------lE~tLn~gleRvW~I~~~k--~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 236 HPELPIIISGSEDGTVRIWNSKTYK----------LEKTLNYGLERVWCIAAHK--GDGKIAVGFDEGSVTV 295 (794)
T ss_pred cCCCcEEEEecCCccEEEecCccee----------hhhhhhcCCceEEEEeecC--CCCeEEEeccCCcEEE
Confidence 9999999999999999999986665 4445555567799999988 7788999998888765
No 31
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.7e-32 Score=218.55 Aligned_cols=259 Identities=20% Similarity=0.251 Sum_probs=220.2
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
||+.|++|+|||+.+ | +...++.||-..|..++++ +...||++++.|+.|+.||++..+.+... .++-
T Consensus 168 tgs~DrtikIwDlat-g--~LkltltGhi~~vr~vavS--------~rHpYlFs~gedk~VKCwDLe~nkvIR~Y-hGHl 235 (460)
T KOG0285|consen 168 TGSADRTIKIWDLAT-G--QLKLTLTGHIETVRGVAVS--------KRHPYLFSAGEDKQVKCWDLEYNKVIRHY-HGHL 235 (460)
T ss_pred ecCCCceeEEEEccc-C--eEEEeecchhheeeeeeec--------ccCceEEEecCCCeeEEEechhhhhHHHh-cccc
Confidence 689999999999999 8 4566999999999999999 78889999999999999999987665443 3455
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI 152 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i 152 (351)
..+.++..+|.-.+|++++++..+++|. .+.||..+|..+.+.| .|+ . +++||.|++|++
T Consensus 236 S~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~-----~dp-q------vit~S~D~tvrl 303 (460)
T KOG0285|consen 236 SGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP-----TDP-Q------VITGSHDSTVRL 303 (460)
T ss_pred ceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeec-----CCC-c------eEEecCCceEEE
Confidence 6889999999999999999999998875 4889999999999996 333 4 999999999999
Q ss_pred EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511 153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR 232 (351)
Q Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 232 (351)
||++. ++...++. .|...+.+++.+|....+++++.|. |+-|++..+ ..+..+.+|...|++++.+.
T Consensus 304 WDl~a--gkt~~tlt-----~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g-----~f~~nlsgh~~iintl~~ns 370 (460)
T KOG0285|consen 304 WDLRA--GKTMITLT-----HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEG-----EFLQNLSGHNAIINTLSVNS 370 (460)
T ss_pred eeecc--CceeEeee-----cccceeeEEecCCchhhhhccCCcc-ceeccCCcc-----chhhccccccceeeeeeecc
Confidence 99999 77777766 8889999999999999999888875 899999887 44667899999999999988
Q ss_pred CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccc-----cccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 233 SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQV-----HGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 233 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
|+ ++++|+++|.+..||.+++.. ++....... ....|.+.+|.. .+..|++|..|.+|++|.-.
T Consensus 371 D~-v~~~G~dng~~~fwdwksg~n-------yQ~~~t~vqpGSl~sEagI~as~fDk--tg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 371 DG-VLVSGGDNGSIMFWDWKSGHN-------YQRGQTIVQPGSLESEAGIFASCFDK--TGSRLITGEADKTIKMYKED 439 (460)
T ss_pred Cc-eEEEcCCceEEEEEecCcCcc-------cccccccccCCccccccceeEEeecc--cCceEEeccCCcceEEEecc
Confidence 86 788899999999999998863 223322211 224589999998 89999999999999999855
No 32
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-33 Score=247.99 Aligned_cols=238 Identities=22% Similarity=0.324 Sum_probs=207.5
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK 81 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~ 81 (351)
+--.|.|++||.+- + .++..|..|.++|..+.|+ +.+.+++|||.|-.|++|+..+.+++
T Consensus 27 slHsG~IQlWDYRM-~--tli~rFdeHdGpVRgv~FH--------~~qplFVSGGDDykIkVWnYk~rrcl--------- 86 (1202)
T KOG0292|consen 27 SLHSGVIQLWDYRM-G--TLIDRFDEHDGPVRGVDFH--------PTQPLFVSGGDDYKIKVWNYKTRRCL--------- 86 (1202)
T ss_pred eecCceeeeehhhh-h--hHHhhhhccCCccceeeec--------CCCCeEEecCCccEEEEEecccceeh---------
Confidence 34579999999998 7 6788999999999999999 88999999999999999999877554
Q ss_pred ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcc
Q 048511 82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGI 161 (351)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 161 (351)
.++.||-+.|..+.|+ +.--. ++++|.|.+|+||+.++ +.
T Consensus 87 --------------------------ftL~GHlDYVRt~~FH------heyPW------IlSASDDQTIrIWNwqs--r~ 126 (1202)
T KOG0292|consen 87 --------------------------FTLLGHLDYVRTVFFH------HEYPW------ILSASDDQTIRIWNWQS--RK 126 (1202)
T ss_pred --------------------------hhhccccceeEEeecc------CCCce------EEEccCCCeEEEEeccC--Cc
Confidence 4568999999999999 56667 99999999999999999 88
Q ss_pred eEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcc------------------------cccc
Q 048511 162 WMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQ------------------------PQKV 217 (351)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~------------------------~~~~ 217 (351)
++..+. +|...|+|..|+|....+++++-|.+|++||+..-+.+... ..+.
T Consensus 127 ~iavlt-----GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V 201 (1202)
T KOG0292|consen 127 CIAVLT-----GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV 201 (1202)
T ss_pred eEEEEe-----cCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee
Confidence 888877 99999999999999999999999999999999643222111 2245
Q ss_pred cccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC
Q 048511 218 PSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE 297 (351)
Q Consensus 218 ~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d 297 (351)
+.+|...|+-++|+|.-.+|++|+.|+.|++|.+...+ .| ++....+|...|+++-|+| ..++|++.|+|
T Consensus 202 LEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-------aW-EvDtcrgH~nnVssvlfhp--~q~lIlSnsED 271 (1202)
T KOG0292|consen 202 LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-------AW-EVDTCRGHYNNVSSVLFHP--HQDLILSNSED 271 (1202)
T ss_pred ecccccccceEEecCCcceEEecCCcceeeEEEecccc-------ce-eehhhhcccCCcceEEecC--ccceeEecCCC
Confidence 67899999999999999999999999999999997765 66 4667779999999999999 88999999999
Q ss_pred CeEEEEecC-chhhhcee
Q 048511 298 KVARVFEAP-LSFLKTLN 314 (351)
Q Consensus 298 g~v~vw~~~-~~~~~~~~ 314 (351)
+.|||||+. ...++++.
T Consensus 272 ksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 272 KSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred ccEEEEecccccceeeee
Confidence 999999987 66677764
No 33
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.7e-33 Score=208.63 Aligned_cols=235 Identities=15% Similarity=0.182 Sum_probs=198.1
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
|++.|.+|++|++.. + .++.++.+|...|..++.+ .+...|++|+.|+.|.+||+++++..
T Consensus 34 tcGsdrtvrLWNp~r-g--~liktYsghG~EVlD~~~s--------~Dnskf~s~GgDk~v~vwDV~TGkv~-------- 94 (307)
T KOG0316|consen 34 TCGSDRTVRLWNPLR-G--ALIKTYSGHGHEVLDAALS--------SDNSKFASCGGDKAVQVWDVNTGKVD-------- 94 (307)
T ss_pred EcCCCceEEeecccc-c--ceeeeecCCCceeeecccc--------ccccccccCCCCceEEEEEcccCeee--------
Confidence 578899999999998 7 6788999999999999999 78889999999999999999998644
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG 160 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 160 (351)
+.+.+|...|+.++|+ .+... +++|+.|..+++||.++...
T Consensus 95 ---------------------------Rr~rgH~aqVNtV~fN------eesSV------v~SgsfD~s~r~wDCRS~s~ 135 (307)
T KOG0316|consen 95 ---------------------------RRFRGHLAQVNTVRFN------EESSV------VASGSFDSSVRLWDCRSRSF 135 (307)
T ss_pred ---------------------------eecccccceeeEEEec------CcceE------EEeccccceeEEEEcccCCC
Confidence 5678999999999999 77788 99999999999999998766
Q ss_pred ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE
Q 048511 161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV 240 (351)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~ 240 (351)
++++.+. .....|.++.. .+..+++|+.||+++.||++.+. ...... ..+|++++|+++++..+.+
T Consensus 136 ePiQild-----ea~D~V~Si~v--~~heIvaGS~DGtvRtydiR~G~-----l~sDy~--g~pit~vs~s~d~nc~La~ 201 (307)
T KOG0316|consen 136 EPIQILD-----EAKDGVSSIDV--AEHEIVAGSVDGTVRTYDIRKGT-----LSSDYF--GHPITSVSFSKDGNCSLAS 201 (307)
T ss_pred Cccchhh-----hhcCceeEEEe--cccEEEeeccCCcEEEEEeecce-----eehhhc--CCcceeEEecCCCCEEEEe
Confidence 6666554 56677888887 45679999999999999999983 344443 4479999999999999999
Q ss_pred eCCCcEEEEcCCCccccccCccceEEeccccccccce--eEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511 241 SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDI--NCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT 317 (351)
Q Consensus 241 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~ 317 (351)
+.|+++++.|-.+++ .+..+++|...= ..++++. ....+++|++||.|++||+. ...+..+..+.
T Consensus 202 ~l~stlrLlDk~tGk----------lL~sYkGhkn~eykldc~l~q--sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~ 269 (307)
T KOG0316|consen 202 SLDSTLRLLDKETGK----------LLKSYKGHKNMEYKLDCCLNQ--SDTHVFSGSEDGKVYFWDLVDETQISKLSVVS 269 (307)
T ss_pred eccceeeecccchhH----------HHHHhcccccceeeeeeeecc--cceeEEeccCCceEEEEEeccceeeeeeccCC
Confidence 999999999998887 677777886653 3344555 67899999999999999975 77777776655
Q ss_pred cc
Q 048511 318 FQ 319 (351)
Q Consensus 318 ~~ 319 (351)
..
T Consensus 270 ~v 271 (307)
T KOG0316|consen 270 TV 271 (307)
T ss_pred ce
Confidence 44
No 34
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.4e-32 Score=226.04 Aligned_cols=267 Identities=22% Similarity=0.321 Sum_probs=206.4
Q ss_pred CCCCCceEEEEEccCCCceEEEEeee---ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeec
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELK---GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQS 77 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~---~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~ 77 (351)
+.+.||+|.+||-.+ ++ .+..+. +|.+.|.+|+|+ ||+..|+|+|.|.+++|||+.+.........
T Consensus 207 t~gsDgki~iyDGkt-ge--~vg~l~~~~aHkGsIfalsWs--------PDs~~~~T~SaDkt~KIWdVs~~slv~t~~~ 275 (603)
T KOG0318|consen 207 TAGSDGKIYIYDGKT-GE--KVGELEDSDAHKGSIFALSWS--------PDSTQFLTVSADKTIKIWDVSTNSLVSTWPM 275 (603)
T ss_pred EecCCccEEEEcCCC-cc--EEEEecCCCCccccEEEEEEC--------CCCceEEEecCCceEEEEEeeccceEEEeec
Confidence 467899999999998 73 445555 999999999999 8999999999999999999999887766655
Q ss_pred ccc--cceeeeEeeecCCeEEecCCceeEE--------EEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC
Q 048511 78 TYR--KEVISLASYIEGPVLVAGSSSYQVS--------VESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD 147 (351)
Q Consensus 78 ~~~--~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d 147 (351)
... .....+.|. +..|++-+..+.+. ....+.||...|+++..+ +++.. |.+|+.|
T Consensus 276 ~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~------~d~~~------i~SgsyD 341 (603)
T KOG0318|consen 276 GSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVS------PDGKT------IYSGSYD 341 (603)
T ss_pred CCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEc------CCCCE------EEeeccC
Confidence 443 445555555 33344433333332 456789999999999999 78899 9999999
Q ss_pred CeEEEEeccCCCcce---------EEEEEecc------------------------------------------------
Q 048511 148 KTMMIWQPEKTTGIW---------MNVVTVGE------------------------------------------------ 170 (351)
Q Consensus 148 ~~i~iwd~~~~~~~~---------~~~~~~~~------------------------------------------------ 170 (351)
|.|.-||..++.... +..+...+
T Consensus 342 G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~av 421 (603)
T KOG0318|consen 342 GHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAV 421 (603)
T ss_pred ceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEE
Confidence 999999987621110 00000000
Q ss_pred ---------cc--------ccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC
Q 048511 171 ---------LS--------HSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS 233 (351)
Q Consensus 171 ---------~~--------~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 233 (351)
+. .......+++++|+++.+++|+.|+.|++|.+..... .....+..|.++|+.++||||
T Consensus 422 v~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l---~ee~~~~~h~a~iT~vaySpd 498 (603)
T KOG0318|consen 422 VACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL---KEEAKLLEHRAAITDVAYSPD 498 (603)
T ss_pred EEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc---cceeeeecccCCceEEEECCC
Confidence 00 0112235678999999999999999999999987643 334456679999999999999
Q ss_pred CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 234 SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 234 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
+.+||++...+.+.+||+.+++. .......|...|.|++|+| +..++|+|+-|-.|.||+++
T Consensus 499 ~~yla~~Da~rkvv~yd~~s~~~---------~~~~w~FHtakI~~~aWsP--~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 499 GAYLAAGDASRKVVLYDVASREV---------KTNRWAFHTAKINCVAWSP--NNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred CcEEEEeccCCcEEEEEcccCce---------ecceeeeeeeeEEEEEeCC--CceEEEeccccceEEEEEcc
Confidence 99999999999999999988872 2333446899999999999 99999999999999999987
No 35
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7.3e-33 Score=215.69 Aligned_cols=264 Identities=18% Similarity=0.204 Sum_probs=219.3
Q ss_pred EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511 20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS 99 (351)
Q Consensus 20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (351)
.+...+.+|.+.|+.+.|+ |+|.+|||||.|..|.+|++.......-....+...+..+.+..++..+++++
T Consensus 38 ap~m~l~gh~geI~~~~F~--------P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~g 109 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFH--------PDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCG 109 (338)
T ss_pred chhhhcCCCcceEEEEEEC--------CCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEec
Confidence 3455678999999999999 88999999999999999998766655555567788999999999999999999
Q ss_pred CceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccc
Q 048511 100 SSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGEL 171 (351)
Q Consensus 100 ~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 171 (351)
.+..+..|. ..++|.+-|+++.-+ . ....+ +.+++.|+++++||++. ...++++
T Consensus 110 tDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~--r---rg~~l------v~SgsdD~t~kl~D~R~--k~~~~t~----- 171 (338)
T KOG0265|consen 110 TDKTVRGWDAETGKRIRKHKGHTSFVNSLDPS--R---RGPQL------VCSGSDDGTLKLWDIRK--KEAIKTF----- 171 (338)
T ss_pred CCceEEEEecccceeeehhccccceeeecCcc--c---cCCeE------EEecCCCceEEEEeecc--cchhhcc-----
Confidence 998886654 477889999988844 2 22334 89999999999999998 5555544
Q ss_pred cccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcC
Q 048511 172 SHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAP 251 (351)
Q Consensus 172 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~ 251 (351)
....+++++.|..++..+.+|+.|+.|++||++.+ ...+.+.+|...|+.+..+|+|.++.+-+.|.++++||+
T Consensus 172 -~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~-----d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~ 245 (338)
T KOG0265|consen 172 -ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN-----DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDV 245 (338)
T ss_pred -ccceeEEEEEecccccceeeccccCceeeeccccC-----cceEEeecccCceeeEEeccCCCccccccccceEEEEEe
Confidence 24557899999999999999999999999999887 568999999999999999999999999999999999999
Q ss_pred CCccccccCccceEEecccccccc----ceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeeccccccch
Q 048511 252 WKNVASLMGENSWHEVARPQVHGH----DINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATFQESSF 323 (351)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~~~~~ 323 (351)
+..... ...+..+++|.+ ....++|+| ++..+.+|+.|..+++||.. ..++..+.+|.+.-..-
T Consensus 246 rp~~p~------~R~v~if~g~~hnfeknlL~cswsp--~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~ 314 (338)
T KOG0265|consen 246 RPFAPS------QRCVKIFQGHIHNFEKNLLKCSWSP--NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEV 314 (338)
T ss_pred cccCCC------CceEEEeecchhhhhhhcceeeccC--CCCccccccccceEEEeecccccEEEEcCCcceeEEEe
Confidence 865422 123555555543 256778999 99999999999999999987 58888999988765554
No 36
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.2e-32 Score=235.79 Aligned_cols=239 Identities=19% Similarity=0.249 Sum_probs=202.8
Q ss_pred CCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccc
Q 048511 3 GLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKE 82 (351)
Q Consensus 3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 82 (351)
+.=|.+-||++.. . ..+...++|...+++++++ |||.++|||+.||.|+|||...+.+.
T Consensus 327 ~klgQLlVweWqs-E--sYVlKQQgH~~~i~~l~YS--------pDgq~iaTG~eDgKVKvWn~~SgfC~---------- 385 (893)
T KOG0291|consen 327 SKLGQLLVWEWQS-E--SYVLKQQGHSDRITSLAYS--------PDGQLIATGAEDGKVKVWNTQSGFCF---------- 385 (893)
T ss_pred CccceEEEEEeec-c--ceeeeccccccceeeEEEC--------CCCcEEEeccCCCcEEEEeccCceEE----------
Confidence 3347899999998 5 3456788999999999999 89999999999999999999887544
Q ss_pred eeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcce
Q 048511 83 VISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIW 162 (351)
Q Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 162 (351)
.++..|+..|+.+.|+ ..++. +++++-||+|+.||+.. ...
T Consensus 386 -------------------------vTFteHts~Vt~v~f~------~~g~~------llssSLDGtVRAwDlkR--YrN 426 (893)
T KOG0291|consen 386 -------------------------VTFTEHTSGVTAVQFT------ARGNV------LLSSSLDGTVRAWDLKR--YRN 426 (893)
T ss_pred -------------------------EEeccCCCceEEEEEE------ecCCE------EEEeecCCeEEeeeecc--cce
Confidence 4567799999999999 89999 99999999999999998 777
Q ss_pred EEEEEeccccccccceEEEEEcCCCCEEEEEeeCC-eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe
Q 048511 163 MNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGG-AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS 241 (351)
Q Consensus 163 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~ 241 (351)
.+++.. .......|++..|.|..+.+|+.|. .|.+|++.++ +.+-.+.+|+++|.+++|+|.+..|+++|
T Consensus 427 fRTft~----P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG-----qllDiLsGHEgPVs~l~f~~~~~~LaS~S 497 (893)
T KOG0291|consen 427 FRTFTS----PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG-----QLLDILSGHEGPVSGLSFSPDGSLLASGS 497 (893)
T ss_pred eeeecC----CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC-----eeeehhcCCCCcceeeEEccccCeEEecc
Confidence 777762 3344678999999999999999885 6999999999 67899999999999999999999999999
Q ss_pred CCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeeccccc
Q 048511 242 HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATFQE 320 (351)
Q Consensus 242 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~~ 320 (351)
.|++|++||+-.... .+..+ .+.+.+..++|.| +|.-|+++.-||.|.+||.. +....++.+.....
T Consensus 498 WDkTVRiW~if~s~~---------~vEtl-~i~sdvl~vsfrP--dG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~ 565 (893)
T KOG0291|consen 498 WDKTVRIWDIFSSSG---------TVETL-EIRSDVLAVSFRP--DGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLS 565 (893)
T ss_pred ccceEEEEEeeccCc---------eeeeE-eeccceeEEEEcC--CCCeEEEEEecceEEEEEhhhceeeccccchhhcc
Confidence 999999999976641 22222 4567799999999 99999999999999999987 65666666655444
Q ss_pred cc
Q 048511 321 SS 322 (351)
Q Consensus 321 ~~ 322 (351)
..
T Consensus 566 ~g 567 (893)
T KOG0291|consen 566 GG 567 (893)
T ss_pred cc
Confidence 33
No 37
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.1e-31 Score=223.20 Aligned_cols=256 Identities=27% Similarity=0.379 Sum_probs=213.3
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.||.|++|+... ++ ....+..|...+..+.|. +++++|++++.||.|++|++...+...... .+.
T Consensus 26 ~~~~~g~i~i~~~~~-~~--~~~~~~~~~~~i~~~~~~--------~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~-~~~ 93 (289)
T cd00200 26 TGSGDGTIKVWDLET-GE--LLRTLKGHTGPVRDVAAS--------ADGTYLASGSSDKTIRLWDLETGECVRTLT-GHT 93 (289)
T ss_pred EeecCcEEEEEEeeC-CC--cEEEEecCCcceeEEEEC--------CCCCEEEEEcCCCeEEEEEcCcccceEEEe-ccC
Confidence 366799999999988 53 456778899999999999 778899999999999999999765544433 334
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI 152 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i 152 (351)
..+.++.+++++.+++++..++.+.++. .+..|...+.++.|+ +++.+ +++++.|+.|++
T Consensus 94 ~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~------l~~~~~~~~i~i 161 (289)
T cd00200 94 SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS------PDGTF------VASSSQDGTIKL 161 (289)
T ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEc------CcCCE------EEEEcCCCcEEE
Confidence 5788999999988888888777765544 345688899999999 56677 888877999999
Q ss_pred EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511 153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR 232 (351)
Q Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 232 (351)
||++. +.....+. .+...+.+++|+|+++.+++++.++.|++||++.. ..+..+..|...+.+++|+|
T Consensus 162 ~d~~~--~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-----~~~~~~~~~~~~i~~~~~~~ 229 (289)
T cd00200 162 WDLRT--GKCVATLT-----GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG-----KCLGTLRGHENGVNSVAFSP 229 (289)
T ss_pred EEccc--cccceeEe-----cCccccceEEECCCcCEEEEecCCCcEEEEECCCC-----ceecchhhcCCceEEEEEcC
Confidence 99987 55555554 56678999999999999999999999999999875 45667767888999999999
Q ss_pred CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511 233 SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE 304 (351)
Q Consensus 233 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~ 304 (351)
++.++++++.|+.|++||+.... ....+..|...|.+++|++ ++.+|++++.|+.|++|+
T Consensus 230 ~~~~~~~~~~~~~i~i~~~~~~~----------~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 230 DGYLLASGSEDGTIRVWDLRTGE----------CVQTLSGHTNSVTSLAWSP--DGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCcEEEEEcCCCcEEEEEcCCce----------eEEEccccCCcEEEEEECC--CCCEEEEecCCCeEEecC
Confidence 98888888889999999998765 4444557888899999999 889999999999999996
No 38
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.6e-31 Score=237.15 Aligned_cols=253 Identities=27% Similarity=0.373 Sum_probs=212.5
Q ss_pred EEeeeec-CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCc--ccceeecccccceeeeEeeecCCeEEec
Q 048511 22 ACELKGH-TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRG--SSANTQSTYRKEVISLASYIEGPVLVAG 98 (351)
Q Consensus 22 ~~~~~~h-~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 98 (351)
...+.+| ...|.++.|+ ++|+.|++++.|+.+++|+..... ..... ..+...+..++|++++.+++.+
T Consensus 151 ~~~~~~~~~~sv~~~~fs--------~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d~~~l~s~ 221 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFS--------PDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPDGSYLLSG 221 (456)
T ss_pred eeeecccccCceEEEEEc--------CCCCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCCCcEEEEe
Confidence 3445444 7799999999 889999999999999999996665 33333 5567789999999999999999
Q ss_pred CCceeEEEEE---------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEec
Q 048511 99 SSSYQVSVES---------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVG 169 (351)
Q Consensus 99 ~~~~~~~~~~---------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 169 (351)
..+..+++|. ++.+|...|++++|+ +++++ +++|+.|++|+|||+++ +++...+.
T Consensus 222 s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~------p~g~~------i~Sgs~D~tvriWd~~~--~~~~~~l~-- 285 (456)
T KOG0266|consen 222 SDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFS------PDGNL------LVSGSDDGTVRIWDVRT--GECVRKLK-- 285 (456)
T ss_pred cCCceEEEeeccCCCeEEEEecCCCCceEEEEec------CCCCE------EEEecCCCcEEEEeccC--CeEEEeee--
Confidence 9999886654 577999999999999 67788 99999999999999999 88888887
Q ss_pred cccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccccccc--EEEEEeecCCCEEEEEeCCCcEE
Q 048511 170 ELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAA--VMDISWSRSSDYLLSVSHDQTTR 247 (351)
Q Consensus 170 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~--v~~v~~sp~~~~l~s~~~dg~i~ 247 (351)
.|...|.+++|++++++|++++.|+.|++||+.++... +...+.++... ++.++|+|++.+|++++.|+.++
T Consensus 286 ---~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~ 359 (456)
T KOG0266|consen 286 ---GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLK 359 (456)
T ss_pred ---ccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEE
Confidence 89999999999999999999999999999999997421 35566666554 99999999999999999999999
Q ss_pred EEcCCCccccccCccceEEeccccccccc---eeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511 248 VFAPWKNVASLMGENSWHEVARPQVHGHD---INCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT 317 (351)
Q Consensus 248 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~ 317 (351)
+||+.... .+....+|... +.+...++ ++.++++|+.|+.|++|++. +..++.+++|.
T Consensus 360 ~w~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~--~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~ 421 (456)
T KOG0266|consen 360 LWDLRSGK----------SVGTYTGHSNLVRCIFSPTLST--GGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS 421 (456)
T ss_pred EEEccCCc----------ceeeecccCCcceeEecccccC--CCCeEEEEeCCceEEEEeCCccchhhhhcCCC
Confidence 99998887 44444455543 33333444 89999999999999999988 88888888884
No 39
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.1e-32 Score=239.86 Aligned_cols=262 Identities=24% Similarity=0.333 Sum_probs=220.0
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK 81 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~ 81 (351)
++.|+.|++|+... .+......+.+|...|.+++|+ +++.++++++.|++|+|||+............+..
T Consensus 177 ~~~~~~i~~~~~~~-~~~~~~~~l~~h~~~v~~~~fs--------~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~ 247 (456)
T KOG0266|consen 177 ASSDGLIRIWKLEG-IKSNLLRELSGHTRGVSDVAFS--------PDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHST 247 (456)
T ss_pred ccCCCcEEEeeccc-ccchhhccccccccceeeeEEC--------CCCcEEEEecCCceEEEeeccCCCeEEEEecCCCC
Confidence 67899999999976 4323556778999999999999 88999999999999999999555444445557888
Q ss_pred ceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511 82 EVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW 153 (351)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 153 (351)
.+.+++|+++++.+++|+.+..+++|. .+.+|.+.|++++|+ +++++ |++++.|+.|+||
T Consensus 248 ~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~------~d~~~------l~s~s~d~~i~vw 315 (456)
T KOG0266|consen 248 YVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFS------PDGNL------LVSASYDGTIRVW 315 (456)
T ss_pred ceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEEC------CCCCE------EEEcCCCccEEEE
Confidence 999999999999999999999997765 478899999999999 89999 9999999999999
Q ss_pred eccCCCcc--eEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccccccc---EEEE
Q 048511 154 QPEKTTGI--WMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAA---VMDI 228 (351)
Q Consensus 154 d~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~---v~~v 228 (351)
|+.+ +. +...+.- ..... .++++.|+|++.++++++.|+.+++||+... .+...+.+|... +.+.
T Consensus 316 d~~~--~~~~~~~~~~~--~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~-----~~~~~~~~~~~~~~~~~~~ 385 (456)
T KOG0266|consen 316 DLET--GSKLCLKLLSG--AENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSG-----KSVGTYTGHSNLVRCIFSP 385 (456)
T ss_pred ECCC--CceeeeecccC--CCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCC-----cceeeecccCCcceeEecc
Confidence 9998 55 3333331 11222 6999999999999999999999999999987 457777777664 4445
Q ss_pred EeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccccc-ccceeEEEEeeeCCCcEEEEec--CCCeEEEEec
Q 048511 229 SWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVH-GHDINCVTIIQGKGNHRFVSGA--DEKVARVFEA 305 (351)
Q Consensus 229 ~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~s~~--~dg~v~vw~~ 305 (351)
..++.+.++++|+.|+.|++||+.++. .+..+.+| ...+..+++++ ...++++++ .|+.+++|..
T Consensus 386 ~~~~~~~~i~sg~~d~~v~~~~~~s~~----------~~~~l~~h~~~~~~~~~~~~--~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 386 TLSTGGKLIYSGSEDGSVYVWDSSSGG----------ILQRLEGHSKAAVSDLSSHP--TENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred cccCCCCeEEEEeCCceEEEEeCCccc----------hhhhhcCCCCCceeccccCC--CcCeeeecCcCCCceEEEecC
Confidence 567899999999999999999998866 67777888 77899999999 889999988 7999999986
Q ss_pred C
Q 048511 306 P 306 (351)
Q Consensus 306 ~ 306 (351)
+
T Consensus 454 ~ 454 (456)
T KOG0266|consen 454 D 454 (456)
T ss_pred C
Confidence 4
No 40
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3e-31 Score=206.72 Aligned_cols=260 Identities=18% Similarity=0.210 Sum_probs=213.1
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.|..|.+|++.. ..+-...+++|.++|..+.|. .++..|+++|.|.+|+.||+++++........ .
T Consensus 64 SgG~Dr~I~LWnv~g--dceN~~~lkgHsgAVM~l~~~--------~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h-~ 132 (338)
T KOG0265|consen 64 SGGSDRAIVLWNVYG--DCENFWVLKGHSGAVMELHGM--------RDGSHILSCGTDKTVRGWDAETGKRIRKHKGH-T 132 (338)
T ss_pred ecCCcceEEEEeccc--cccceeeeccccceeEeeeec--------cCCCEEEEecCCceEEEEecccceeeehhccc-c
Confidence 689999999999876 235677888999999999999 89999999999999999999999887665533 2
Q ss_pred cceeeeEeeecCC-eEEecCCceeEEEEEecc-------ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511 81 KEVISLASYIEGP-VLVAGSSSYQVSVESLLI-------GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI 152 (351)
Q Consensus 81 ~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~-------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i 152 (351)
.-+.++..+.-|. .+.++..++.++++..-+ ....+++++.|. ..+.. +.+|+-|+.|++
T Consensus 133 ~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~------d~s~q------v~sggIdn~ikv 200 (338)
T KOG0265|consen 133 SFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFK------DTSDQ------VISGGIDNDIKV 200 (338)
T ss_pred ceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEec------ccccc------eeeccccCceee
Confidence 2334444333444 555688899998887542 235578999999 77888 999999999999
Q ss_pred EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccccc----ccEEEE
Q 048511 153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHF----AAVMDI 228 (351)
Q Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~----~~v~~v 228 (351)
||++. ......+. +|...|+.+..+|+|.++.+-+.|.++++||++.--.. ..++..+.+|. ......
T Consensus 201 Wd~r~--~d~~~~ls-----Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~-~R~v~if~g~~hnfeknlL~c 272 (338)
T KOG0265|consen 201 WDLRK--NDGLYTLS-----GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS-QRCVKIFQGHIHNFEKNLLKC 272 (338)
T ss_pred ecccc--CcceEEee-----cccCceeeEEeccCCCccccccccceEEEEEecccCCC-CceEEEeecchhhhhhhccee
Confidence 99998 66666666 99999999999999999999999999999999753211 13455666653 235667
Q ss_pred EeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEE
Q 048511 229 SWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVF 303 (351)
Q Consensus 229 ~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw 303 (351)
+|+|++..+.+|+.|+.+++||..... .+..+.+|...|++++|+| ...+|.+++.|.+|++=
T Consensus 273 swsp~~~~i~ags~dr~vyvwd~~~r~----------~lyklpGh~gsvn~~~Fhp--~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 273 SWSPNGTKITAGSADRFVYVWDTTSRR----------ILYKLPGHYGSVNEVDFHP--TEPIILSCSSDKTIYLG 335 (338)
T ss_pred eccCCCCccccccccceEEEeeccccc----------EEEEcCCcceeEEEeeecC--CCcEEEEeccCceeEee
Confidence 999999999999999999999997766 6777889999999999999 89999999999999763
No 41
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=1.7e-30 Score=230.94 Aligned_cols=240 Identities=18% Similarity=0.267 Sum_probs=176.6
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCC-ccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAI-SILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
|+.++.|++|+... . ..+..+.+|.+.|.+++|+ |+ +.+||||+.|++|++||+.+.........
T Consensus 50 GG~~gvI~L~~~~r-~--~~v~~L~gH~~~V~~lafs--------P~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~--- 115 (568)
T PTZ00420 50 GGLIGAIRLENQMR-K--PPVIKLKGHTSSILDLQFN--------PCFSEILASGSEDLTIRVWEIPHNDESVKEIK--- 115 (568)
T ss_pred CCceeEEEeeecCC-C--ceEEEEcCCCCCEEEEEEc--------CCCCCEEEEEeCCCeEEEEECCCCCccccccc---
Confidence 67789999999876 4 4677899999999999999 54 78999999999999999976432110000
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG 160 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 160 (351)
.....+.+|...|.+++|+ |++.. +|++++.|++|+|||++. +
T Consensus 116 ------------------------~p~~~L~gH~~~V~sVaf~------P~g~~-----iLaSgS~DgtIrIWDl~t--g 158 (568)
T PTZ00420 116 ------------------------DPQCILKGHKKKISIIDWN------PMNYY-----IMCSSGFDSFVNIWDIEN--E 158 (568)
T ss_pred ------------------------cceEEeecCCCcEEEEEEC------CCCCe-----EEEEEeCCCeEEEEECCC--C
Confidence 1123457899999999999 45543 167999999999999998 5
Q ss_pred ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEE-----EEeecCCC
Q 048511 161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD-----ISWSRSSD 235 (351)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~-----v~~sp~~~ 235 (351)
.....+. +...|.+++|+|+|.+|++++.|+.|++||++++ ..+.++.+|.+.+.. ..|++++.
T Consensus 159 ~~~~~i~------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg-----~~i~tl~gH~g~~~s~~v~~~~fs~d~~ 227 (568)
T PTZ00420 159 KRAFQIN------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ-----EIASSFHIHDGGKNTKNIWIDGLGGDDN 227 (568)
T ss_pred cEEEEEe------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC-----cEEEEEecccCCceeEEEEeeeEcCCCC
Confidence 5444432 3457999999999999999999999999999987 456778888876433 23458889
Q ss_pred EEEEEeCCC----cEEEEcCCCccccccCccceEEeccc--cccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchh
Q 048511 236 YLLSVSHDQ----TTRVFAPWKNVASLMGENSWHEVARP--QVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSF 309 (351)
Q Consensus 236 ~l~s~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~ 309 (351)
+|++++.|+ .|+|||+++... ++... ..+...+... |.+ +++.++++|+.|+.|++|++....
T Consensus 228 ~IlTtG~d~~~~R~VkLWDlr~~~~---------pl~~~~ld~~~~~L~p~-~D~-~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 228 YILSTGFSKNNMREMKLWDLKNTTS---------ALVTMSIDNASAPLIPH-YDE-STGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred EEEEEEcCCCCccEEEEEECCCCCC---------ceEEEEecCCccceEEe-eeC-CCCCEEEEEECCCeEEEEEccCCc
Confidence 999888764 799999986441 22222 1222222222 333 368899999999999999987444
Q ss_pred hhcee
Q 048511 310 LKTLN 314 (351)
Q Consensus 310 ~~~~~ 314 (351)
+..+.
T Consensus 297 ~~~l~ 301 (568)
T PTZ00420 297 IRKVN 301 (568)
T ss_pred EEeec
Confidence 44443
No 42
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.3e-31 Score=226.80 Aligned_cols=280 Identities=19% Similarity=0.216 Sum_probs=227.2
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc--cc-----
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS--SA----- 73 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~--~~----- 73 (351)
+|+.|-++++|.++.... .....+.+|.+.|-+.-|. .+...++|.+.||.+.+|....... ..
T Consensus 162 ~gsrD~s~rl~~v~~~k~-~~~~~l~gHkd~VvacfF~--------~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~ 232 (893)
T KOG0291|consen 162 TGSRDLSARLFGVDGNKN-LFTYALNGHKDYVVACFFG--------ANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDE 232 (893)
T ss_pred eccccceEEEEEeccccc-cceEeccCCCcceEEEEec--------cCcceEEEEecCceEEEEEecCCCcccccccccc
Confidence 589999999999987333 4467889999999999999 8888999999999999998871100 00
Q ss_pred -------------------------ee-ecccccceeeeEeeecCCeEEecCCceeE--------EEEEeccccccceEE
Q 048511 74 -------------------------NT-QSTYRKEVISLASYIEGPVLVAGSSSYQV--------SVESLLIGHEDWVYS 119 (351)
Q Consensus 74 -------------------------~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~h~~~v~~ 119 (351)
.. .......+.+.+|++.-..|+++-..+.+ .+++.+.-...+|..
T Consensus 233 eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t 312 (893)
T KOG0291|consen 233 EGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILT 312 (893)
T ss_pred cccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeE
Confidence 00 00112567788899999999998877765 344556556678999
Q ss_pred EEecCCCCCCCCCcccCCCceeEEeecC-CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCe
Q 048511 120 VQWEPPSTAPSDGVSCQQPSSILSASMD-KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGA 198 (351)
Q Consensus 120 l~~~p~~~~~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~ 198 (351)
+.|+ ..|.. ||.|+.. |++.||+.+. ...+...+ +|...+.+++++|||+++++|+.||.
T Consensus 313 ~~~N------~tGDW------iA~g~~klgQLlVweWqs--EsYVlKQQ-----gH~~~i~~l~YSpDgq~iaTG~eDgK 373 (893)
T KOG0291|consen 313 VSFN------STGDW------IAFGCSKLGQLLVWEWQS--ESYVLKQQ-----GHSDRITSLAYSPDGQLIATGAEDGK 373 (893)
T ss_pred EEec------ccCCE------EEEcCCccceEEEEEeec--cceeeecc-----ccccceeeEEECCCCcEEEeccCCCc
Confidence 9999 78888 8888764 8999999998 66665555 89999999999999999999999999
Q ss_pred EEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccccc-------------------
Q 048511 199 FHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM------------------- 259 (351)
Q Consensus 199 i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~------------------- 259 (351)
|+|||...+ .|..++..|.+.|+.++|+..++.+++.+.||+|+.||+.....-.+
T Consensus 374 VKvWn~~Sg-----fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe 448 (893)
T KOG0291|consen 374 VKVWNTQSG-----FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE 448 (893)
T ss_pred EEEEeccCc-----eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCC
Confidence 999999987 78999999999999999999999999999999999999876543221
Q ss_pred ---------------CccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC--chhhhceee
Q 048511 260 ---------------GENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP--LSFLKTLNH 315 (351)
Q Consensus 260 ---------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~--~~~~~~~~~ 315 (351)
..++.+.+..+.+|.++|.+++|+| .+..|+++|.|.+||+||+= ....++++.
T Consensus 449 lV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~--~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i 519 (893)
T KOG0291|consen 449 LVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP--DGSLLASGSWDKTVRIWDIFSSSGTVETLEI 519 (893)
T ss_pred EEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc--ccCeEEeccccceEEEEEeeccCceeeeEee
Confidence 2334456667789999999999999 89999999999999999964 335555554
No 43
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.6e-32 Score=216.30 Aligned_cols=267 Identities=16% Similarity=0.279 Sum_probs=203.1
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.||.|+|||+.. . .+..++++|.+.|..|++. . ..++|+|.|.+|+.|.+... ....+.. .
T Consensus 84 SGs~DG~VkiWnlsq-R--~~~~~f~AH~G~V~Gi~v~--------~--~~~~tvgdDKtvK~wk~~~~-p~~tilg--~ 147 (433)
T KOG0268|consen 84 SGSCDGEVKIWNLSQ-R--ECIRTFKAHEGLVRGICVT--------Q--TSFFTVGDDKTVKQWKIDGP-PLHTILG--K 147 (433)
T ss_pred ccccCceEEEEehhh-h--hhhheeecccCceeeEEec--------c--cceEEecCCcceeeeeccCC-cceeeec--c
Confidence 689999999999988 4 5788999999999999998 4 68999999999999998763 2221111 2
Q ss_pred cceeeeEeeecCCeEEecCCceeE------EEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEe
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQV------SVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQ 154 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd 154 (351)
.....+.-+..+..+++++....+ ...+.+.-..+.|.++.|+| -...+ |++++.|+.|.+||
T Consensus 148 s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNp-----vETsI------Las~~sDrsIvLyD 216 (433)
T KOG0268|consen 148 SVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNP-----VETSI------LASCASDRSIVLYD 216 (433)
T ss_pred ccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCC-----Ccchh------eeeeccCCceEEEe
Confidence 233344444455666666654433 12333444456789999997 44556 99999999999999
Q ss_pred ccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCC
Q 048511 155 PEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSS 234 (351)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~ 234 (351)
++. ..++..+.+ ...-..|+|+|..-.+.+++.|..++.||++.-+ .++....+|.+.|.+|.|||.|
T Consensus 217 ~R~--~~Pl~KVi~------~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~----~p~~v~~dhvsAV~dVdfsptG 284 (433)
T KOG0268|consen 217 LRQ--ASPLKKVIL------TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS----RPLNVHKDHVSAVMDVDFSPTG 284 (433)
T ss_pred ccc--CCccceeee------eccccceecCccccceeeccccccceehhhhhhc----ccchhhcccceeEEEeccCCCc
Confidence 999 666666542 2345679999988888999999999999998875 6788899999999999999999
Q ss_pred CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhce
Q 048511 235 DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTL 313 (351)
Q Consensus 235 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~ 313 (351)
+-|++||.|.+|+||..+.+... ...-..++ ..|.|+.|+. |.+++++||+|+.||+|... ...+..+
T Consensus 285 ~EfvsgsyDksIRIf~~~~~~SR-----diYhtkRM----q~V~~Vk~S~--Dskyi~SGSdd~nvRlWka~Aseklgv~ 353 (433)
T KOG0268|consen 285 QEFVSGSYDKSIRIFPVNHGHSR-----DIYHTKRM----QHVFCVKYSM--DSKYIISGSDDGNVRLWKAKASEKLGVI 353 (433)
T ss_pred chhccccccceEEEeecCCCcch-----hhhhHhhh----heeeEEEEec--cccEEEecCCCcceeeeecchhhhcCCC
Confidence 99999999999999999877621 11111111 2389999999 99999999999999999976 4444444
Q ss_pred eecc
Q 048511 314 NHAT 317 (351)
Q Consensus 314 ~~~~ 317 (351)
....
T Consensus 354 t~rE 357 (433)
T KOG0268|consen 354 TPRE 357 (433)
T ss_pred ChhH
Confidence 4333
No 44
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-31 Score=202.07 Aligned_cols=241 Identities=18% Similarity=0.332 Sum_probs=194.8
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
|++.|++|+|+.++..+....+.+|.||.++|+.++|.+| .-|.+||+++.||.|.||.-..++..+..
T Consensus 28 TcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahP------k~G~iLAScsYDgkVIiWke~~g~w~k~~----- 96 (299)
T KOG1332|consen 28 TCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHP------KFGTILASCSYDGKVIIWKEENGRWTKAY----- 96 (299)
T ss_pred eecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeeccc------ccCcEeeEeecCceEEEEecCCCchhhhh-----
Confidence 6899999999999986665788999999999999999843 46899999999999999998877443322
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG 160 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 160 (351)
....|...|++++|.|+. .|-. |+.++.||.|.|.+.+...+
T Consensus 97 ----------------------------e~~~h~~SVNsV~waphe----ygl~------LacasSDG~vsvl~~~~~g~ 138 (299)
T KOG1332|consen 97 ----------------------------EHAAHSASVNSVAWAPHE----YGLL------LACASSDGKVSVLTYDSSGG 138 (299)
T ss_pred ----------------------------hhhhhcccceeecccccc----cceE------EEEeeCCCcEEEEEEcCCCC
Confidence 246799999999999853 4556 99999999999999987422
Q ss_pred ceEEEEEeccccccccceEEEEEcCC---C-----------CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEE
Q 048511 161 IWMNVVTVGELSHSALGFYGGHWSPD---G-----------RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVM 226 (351)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~---~-----------~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~ 226 (351)
-....+ ...|...+.+++|.|. | +.|++|+.|..|+||+....+ +....++.+|.+.|+
T Consensus 139 w~t~ki----~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~---w~~e~~l~~H~dwVR 211 (299)
T KOG1332|consen 139 WTTSKI----VFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS---WKLERTLEGHKDWVR 211 (299)
T ss_pred ccchhh----hhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc---hhhhhhhhhcchhhh
Confidence 222222 2378889999999985 4 569999999999999998863 566778999999999
Q ss_pred EEEeecCC----CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEE
Q 048511 227 DISWSRSS----DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARV 302 (351)
Q Consensus 227 ~v~~sp~~----~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~v 302 (351)
.++|.|.- .+|+++++||++.||-..... ..|+.. .+......++.++|+. .|++|+.++.|..|.+
T Consensus 212 DVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~------e~wk~t-ll~~f~~~~w~vSWS~--sGn~LaVs~GdNkvtl 282 (299)
T KOG1332|consen 212 DVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY------EPWKKT-LLEEFPDVVWRVSWSL--SGNILAVSGGDNKVTL 282 (299)
T ss_pred hhhhccccCCCceeeEEecCCCcEEEEEecCcc------Cccccc-ccccCCcceEEEEEec--cccEEEEecCCcEEEE
Confidence 99999953 579999999999999887332 234322 2222345699999999 8999999999999999
Q ss_pred EecC
Q 048511 303 FEAP 306 (351)
Q Consensus 303 w~~~ 306 (351)
|..+
T Consensus 283 wke~ 286 (299)
T KOG1332|consen 283 WKEN 286 (299)
T ss_pred EEeC
Confidence 9855
No 45
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-31 Score=200.41 Aligned_cols=223 Identities=15% Similarity=0.219 Sum_probs=197.3
Q ss_pred EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511 20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS 99 (351)
Q Consensus 20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (351)
+....+..|.++|.++.|+ .+|+|.+||+.|++|++|+...+..
T Consensus 8 kr~~~l~~~qgaV~avryN--------~dGnY~ltcGsdrtvrLWNp~rg~l---------------------------- 51 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYN--------VDGNYCLTCGSDRTVRLWNPLRGAL---------------------------- 51 (307)
T ss_pred hhceeecccccceEEEEEc--------cCCCEEEEcCCCceEEeecccccce----------------------------
Confidence 3567788999999999999 8999999999999999999987643
Q ss_pred CceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceE
Q 048511 100 SSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFY 179 (351)
Q Consensus 100 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~ 179 (351)
++++.+|...|..++.+ .|... |++|+.|+.|.+||+.+ ++..+.+. +|...|.
T Consensus 52 -------iktYsghG~EVlD~~~s------~Dnsk------f~s~GgDk~v~vwDV~T--Gkv~Rr~r-----gH~aqVN 105 (307)
T KOG0316|consen 52 -------IKTYSGHGHEVLDAALS------SDNSK------FASCGGDKAVQVWDVNT--GKVDRRFR-----GHLAQVN 105 (307)
T ss_pred -------eeeecCCCceeeecccc------ccccc------cccCCCCceEEEEEccc--Ceeeeecc-----cccceee
Confidence 36678899999999999 77788 99999999999999999 88888887 9999999
Q ss_pred EEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccccc
Q 048511 180 GGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM 259 (351)
Q Consensus 180 ~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~ 259 (351)
.+.|+.+...+++|+.|.++++||.+.... +|++.+......|.++..+ +..|++|+.||++|.||++.+.
T Consensus 106 tV~fNeesSVv~SgsfD~s~r~wDCRS~s~---ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~---- 176 (307)
T KOG0316|consen 106 TVRFNEESSVVASGSFDSSVRLWDCRSRSF---EPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGT---- 176 (307)
T ss_pred EEEecCcceEEEeccccceeEEEEcccCCC---CccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecce----
Confidence 999999999999999999999999998764 7888888888899999886 5679999999999999999887
Q ss_pred CccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeeccccccch
Q 048511 260 GENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATFQESSF 323 (351)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~~~~~ 323 (351)
..... .+++|+|++|++ +++..++++-|+++|+-|-+ |++++.+++|..++-+-
T Consensus 177 ------l~sDy--~g~pit~vs~s~--d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykl 231 (307)
T KOG0316|consen 177 ------LSSDY--FGHPITSVSFSK--DGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKL 231 (307)
T ss_pred ------eehhh--cCCcceeEEecC--CCCEEEEeeccceeeecccchhHHHHHhcccccceeee
Confidence 33333 456799999999 99999999999999999976 99999999987665543
No 46
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-31 Score=227.58 Aligned_cols=240 Identities=17% Similarity=0.260 Sum_probs=208.8
Q ss_pred EeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCce
Q 048511 23 CELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSY 102 (351)
Q Consensus 23 ~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 102 (351)
+.+..|+..|.++.|+ |...+++++-..|.|.|||.++...+..+.. ...++++..|-.--+.+++|+.++
T Consensus 7 rk~~~rSdRVKsVd~H--------PtePw~la~LynG~V~IWnyetqtmVksfeV-~~~PvRa~kfiaRknWiv~GsDD~ 77 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFH--------PTEPWILAALYNGDVQIWNYETQTMVKSFEV-SEVPVRAAKFIARKNWIVTGSDDM 77 (794)
T ss_pred hHhhccCCceeeeecC--------CCCceEEEeeecCeeEEEecccceeeeeeee-cccchhhheeeeccceEEEecCCc
Confidence 3556689999999999 7888999999999999999998776654432 345788888888899999999999
Q ss_pred eEEE--------EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccccc
Q 048511 103 QVSV--------ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHS 174 (351)
Q Consensus 103 ~~~~--------~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 174 (351)
.+++ +..+..|.+.|.|++.+| ...+ ++++|.|-+|++||.+.. -.+.+++. +|
T Consensus 78 ~IrVfnynt~ekV~~FeAH~DyIR~iavHP------t~P~------vLtsSDDm~iKlW~we~~-wa~~qtfe-----GH 139 (794)
T KOG0276|consen 78 QIRVFNYNTGEKVKTFEAHSDYIRSIAVHP------TLPY------VLTSSDDMTIKLWDWENE-WACEQTFE-----GH 139 (794)
T ss_pred eEEEEecccceeeEEeeccccceeeeeecC------CCCe------EEecCCccEEEEeeccCc-eeeeeEEc-----Cc
Confidence 9866 456889999999999995 4446 999999999999999851 23334444 89
Q ss_pred ccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCC--CEEEEEeCCCcEEEEcC
Q 048511 175 ALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSS--DYLLSVSHDQTTRVFAP 251 (351)
Q Consensus 175 ~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~--~~l~s~~~dg~i~vwd~ 251 (351)
...|++++|+| |.+.+++++-|++|++|.+... .+..++++|...|++++|-+.| .+|++|+.|.+|+|||.
T Consensus 140 ~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~-----~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDy 214 (794)
T KOG0276|consen 140 EHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP-----HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDY 214 (794)
T ss_pred ceEEEEEEecCCCccceeeeeccccEEEEEcCCC-----CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeec
Confidence 99999999999 5679999999999999999887 6789999999999999998854 79999999999999999
Q ss_pred CCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 252 WKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
++.. ++.++.+|...|.++.|+| .-.+|++||+||+||||+..
T Consensus 215 Qtk~----------CV~TLeGHt~Nvs~v~fhp--~lpiiisgsEDGTvriWhs~ 257 (794)
T KOG0276|consen 215 QTKS----------CVQTLEGHTNNVSFVFFHP--ELPIIISGSEDGTVRIWNSK 257 (794)
T ss_pred chHH----------HHHHhhcccccceEEEecC--CCcEEEEecCCccEEEecCc
Confidence 9988 7888999999999999999 88999999999999999965
No 47
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-31 Score=202.95 Aligned_cols=244 Identities=16% Similarity=0.234 Sum_probs=199.0
Q ss_pred CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511 4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV 83 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 83 (351)
..|++.|.++...+.+.....+.- .+.+..++|+ + ...+.+++++.||++++||+.....
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d~-~D~LfdV~Ws----e---~~e~~~~~a~GDGSLrl~d~~~~s~------------ 95 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYDT-EDGLFDVAWS----E---NHENQVIAASGDGSLRLFDLTMPSK------------ 95 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeeec-ccceeEeeec----C---CCcceEEEEecCceEEEeccCCCCc------------
Confidence 368999999964355555566653 6789999999 3 3467888999999999999543321
Q ss_pred eeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceE
Q 048511 84 ISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWM 163 (351)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 163 (351)
.+..++.|...|.++.|++ .+... ++++|.|++|++|+... +..+
T Consensus 96 ----------------------Pi~~~kEH~~EV~Svdwn~-----~~r~~------~ltsSWD~TiKLW~~~r--~~Sv 140 (311)
T KOG0277|consen 96 ----------------------PIHKFKEHKREVYSVDWNT-----VRRRI------FLTSSWDGTIKLWDPNR--PNSV 140 (311)
T ss_pred ----------------------chhHHHhhhhheEEecccc-----cccee------EEeeccCCceEeecCCC--Ccce
Confidence 2245788999999999997 56666 89999999999999988 6777
Q ss_pred EEEEeccccccccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec-CCCEEEEEe
Q 048511 164 NVVTVGELSHSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR-SSDYLLSVS 241 (351)
Q Consensus 164 ~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~s~~ 241 (351)
.++. +|..-|+...|+| ..+.+++++.|+.+++||++... +.. .+..|...|.++.|+. +...|+||+
T Consensus 141 ~Tf~-----gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g----k~~-~i~ah~~Eil~cdw~ky~~~vl~Tg~ 210 (311)
T KOG0277|consen 141 QTFN-----GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG----KFM-SIEAHNSEILCCDWSKYNHNVLATGG 210 (311)
T ss_pred Eeec-----CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC----cee-EEEeccceeEeecccccCCcEEEecC
Confidence 7776 8999999999999 56799999999999999998763 223 3788999999999997 567789999
Q ss_pred CCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC--chhhhceeecccc
Q 048511 242 HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP--LSFLKTLNHATFQ 319 (351)
Q Consensus 242 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~--~~~~~~~~~~~~~ 319 (351)
.|+.|++||+++.+ .++..+.+|+..|..+.|+| ....+|++++.|-++||||.. ...+++...|+..
T Consensus 211 vd~~vr~wDir~~r---------~pl~eL~gh~~AVRkvk~Sp-h~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEF 280 (311)
T KOG0277|consen 211 VDNLVRGWDIRNLR---------TPLFELNGHGLAVRKVKFSP-HHASLLASASYDMTVRIWDPERQDSAIETVDHHTEF 280 (311)
T ss_pred CCceEEEEehhhcc---------ccceeecCCceEEEEEecCc-chhhHhhhccccceEEecccccchhhhhhhhccceE
Confidence 99999999999877 26677789999999999999 457899999999999999975 5567777777754
Q ss_pred ccc
Q 048511 320 ESS 322 (351)
Q Consensus 320 ~~~ 322 (351)
..+
T Consensus 281 v~g 283 (311)
T KOG0277|consen 281 VCG 283 (311)
T ss_pred Eec
Confidence 443
No 48
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1e-30 Score=217.90 Aligned_cols=267 Identities=15% Similarity=0.206 Sum_probs=211.7
Q ss_pred CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc-cceeecccccce
Q 048511 5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS-SANTQSTYRKEV 83 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~ 83 (351)
...|.+-+++. . .....+..|...++-..|+ |.|.|+|+|...|+|||||....+. +.........++
T Consensus 38 Gksv~ir~i~~-~--~~~~iYtEH~~~vtVAkyS--------PsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I 106 (603)
T KOG0318|consen 38 GKSVIIRNIDN-P--ASVDIYTEHAHQVTVAKYS--------PSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPI 106 (603)
T ss_pred CCEEEEEECCC-c--cceeeeccccceeEEEEeC--------CCceEEeecCCcCcEEEEeccCcceeeeeeeeeccccc
Confidence 34667777776 3 4566788999999999999 8899999999999999999987443 444455557788
Q ss_pred eeeEeeecCCeEEecC-Ccee---EEEE------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511 84 ISLASYIEGPVLVAGS-SSYQ---VSVE------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW 153 (351)
Q Consensus 84 ~~~~~~~~~~~l~~~~-~~~~---~~~~------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 153 (351)
..+.|+.+++.+++.+ .... +-.+ -.+.||...|+++.|-|.. |.++++|+.|++|.+|
T Consensus 107 ~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsR-----------PfRi~T~sdDn~v~ff 175 (603)
T KOG0318|consen 107 KDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSR-----------PFRIATGSDDNTVAFF 175 (603)
T ss_pred ccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCC-----------ceEEEeccCCCeEEEe
Confidence 9999999999888743 2222 2222 2478999999999999632 2249999999999999
Q ss_pred eccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc---cccccEEEEEe
Q 048511 154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS---GHFAAVMDISW 230 (351)
Q Consensus 154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~---~~~~~v~~v~~ 230 (351)
+-.. -+...++ ..|...|.++.|+|||..+++++.||++.+||-.+++ .+..+. +|.+.|.+++|
T Consensus 176 eGPP--FKFk~s~-----r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge-----~vg~l~~~~aHkGsIfalsW 243 (603)
T KOG0318|consen 176 EGPP--FKFKSSF-----REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE-----KVGELEDSDAHKGSIFALSW 243 (603)
T ss_pred eCCC--eeeeecc-----cccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc-----EEEEecCCCCccccEEEEEE
Confidence 8554 2222222 3788899999999999999999999999999998884 355555 89999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEcCCCcccccc---------------------------------CccceEEeccccccccce
Q 048511 231 SRSSDYLLSVSHDQTTRVFAPWKNVASLM---------------------------------GENSWHEVARPQVHGHDI 277 (351)
Q Consensus 231 sp~~~~l~s~~~dg~i~vwd~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~i 277 (351)
+||+..|+|++.|.+++|||+.+.+...+ .......+....+|...|
T Consensus 244 sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~I 323 (603)
T KOG0318|consen 244 SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSI 323 (603)
T ss_pred CCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccce
Confidence 99999999999999999999988765443 001111334566899999
Q ss_pred eEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511 278 NCVTIIQGKGNHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 278 ~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 307 (351)
++++.++ ++.+|.+|+.||.|.-|+...
T Consensus 324 TaLtv~~--d~~~i~SgsyDG~I~~W~~~~ 351 (603)
T KOG0318|consen 324 TALTVSP--DGKTIYSGSYDGHINSWDSGS 351 (603)
T ss_pred eEEEEcC--CCCEEEeeccCceEEEEecCC
Confidence 9999999 899999999999999999873
No 49
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.98 E-value=1.3e-30 Score=213.88 Aligned_cols=254 Identities=17% Similarity=0.236 Sum_probs=198.5
Q ss_pred CCCCCceEEEEEccCCC-------ceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc
Q 048511 1 MGGLDNKIHLYRGQRTG-------KFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA 73 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~-------~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~ 73 (351)
+++..+.|+|||..... ++.+-..+.+|.+.=++|.|+ + .....|++++.|++|++||+.......
T Consensus 142 t~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn----~---~~~g~Lls~~~d~~i~lwdi~~~~~~~ 214 (422)
T KOG0264|consen 142 TKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWN----R---QQEGTLLSGSDDHTICLWDINAESKED 214 (422)
T ss_pred ecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccc----c---ccceeEeeccCCCcEEEEeccccccCC
Confidence 45778899999987621 233344889999988999999 3 345689999999999999998654321
Q ss_pred eeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511 74 NTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW 153 (351)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 153 (351)
. .+.....+.+|.+.|..++|+| .+..+ |++++.|+.+.||
T Consensus 215 ~----------------------------~~~p~~~~~~h~~~VeDV~~h~-----~h~~l------F~sv~dd~~L~iw 255 (422)
T KOG0264|consen 215 K----------------------------VVDPKTIFSGHEDVVEDVAWHP-----LHEDL------FGSVGDDGKLMIW 255 (422)
T ss_pred c----------------------------cccceEEeecCCcceehhhccc-----cchhh------heeecCCCeEEEE
Confidence 1 1123356789999999999998 66677 9999999999999
Q ss_pred eccCCCcceEEEEEeccccccccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511 154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR 232 (351)
Q Consensus 154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 232 (351)
|+|+.+.+...... .|...|.|++|+| ++..||+|+.|++|++||+|+-. +++.++.+|...|..|.|+|
T Consensus 256 D~R~~~~~~~~~~~-----ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~----~~lh~~e~H~dev~~V~WSP 326 (422)
T KOG0264|consen 256 DTRSNTSKPSHSVK-----AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN----KPLHTFEGHEDEVFQVEWSP 326 (422)
T ss_pred EcCCCCCCCccccc-----ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc----cCceeccCCCcceEEEEeCC
Confidence 99963233333333 8899999999999 55688999999999999999875 68899999999999999999
Q ss_pred CC-CEEEEEeCCCcEEEEcCCCcccccc----CccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511 233 SS-DYLLSVSHDQTTRVFAPWKNVASLM----GENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 233 ~~-~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 307 (351)
.. ..|++++.|+.+.|||+..-...+. .......+....+|...|..++|+| .....|++.++|+.+.||+...
T Consensus 327 h~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp-~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 327 HNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNP-NEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCC-CCCeEEEEecCCceEEEeeccc
Confidence 64 6789999999999999965432210 0112233455568888999999999 4577889999999999999875
Q ss_pred hhh
Q 048511 308 SFL 310 (351)
Q Consensus 308 ~~~ 310 (351)
.+.
T Consensus 406 ~i~ 408 (422)
T KOG0264|consen 406 NIY 408 (422)
T ss_pred ccc
Confidence 543
No 50
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.98 E-value=1.3e-29 Score=241.08 Aligned_cols=263 Identities=14% Similarity=0.156 Sum_probs=205.3
Q ss_pred CceEEEEEccCCCceEEE---EeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc----c--cee
Q 048511 5 DNKIHLYRGQRTGKFVRA---CELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS----S--ANT 75 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~---~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~----~--~~~ 75 (351)
+|.+++|+... -+.... ..+..|.+.|.+++|+ +++++||||+.|++|+||++..... . ...
T Consensus 457 ~gl~~~~~~~~-~~~~~~~~~~~~~~~~~~V~~i~fs--------~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~ 527 (793)
T PLN00181 457 EGLCKYLSFSK-LRVKADLKQGDLLNSSNLVCAIGFD--------RDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVV 527 (793)
T ss_pred hhhhhhhcccc-eEEEEeeccccccCCCCcEEEEEEC--------CCCCEEEEEeCCCEEEEEECCcccccccccccceE
Confidence 56677787765 222111 2245689999999999 8899999999999999999864211 0 011
Q ss_pred ecccccceeeeEeee-cCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeec
Q 048511 76 QSTYRKEVISLASYI-EGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM 146 (351)
Q Consensus 76 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~ 146 (351)
.......+.+++|++ .+..+++++.++.+++|. .+.+|.+.|++++|+| .++.+ |++|+.
T Consensus 528 ~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p-----~~~~~------L~Sgs~ 596 (793)
T PLN00181 528 ELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSS-----ADPTL------LASGSD 596 (793)
T ss_pred EecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcC-----CCCCE------EEEEcC
Confidence 111234567788876 477899999999888775 3568999999999996 57788 999999
Q ss_pred CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEc-CCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccE
Q 048511 147 DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWS-PDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAV 225 (351)
Q Consensus 147 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v 225 (351)
|++|++||++. +..+..+. . ...+.++.|+ +++.+|++|+.|+.|++||++... .++..+.+|...|
T Consensus 597 Dg~v~iWd~~~--~~~~~~~~-----~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~----~~~~~~~~h~~~V 664 (793)
T PLN00181 597 DGSVKLWSINQ--GVSIGTIK-----T-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK----LPLCTMIGHSKTV 664 (793)
T ss_pred CCEEEEEECCC--CcEEEEEe-----c-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC----ccceEecCCCCCE
Confidence 99999999998 66665554 2 3468999995 578999999999999999998753 3466778899999
Q ss_pred EEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511 226 MDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA 305 (351)
Q Consensus 226 ~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~ 305 (351)
..+.|. ++.+|++++.|++|++||++.... ...+..+..+.+|...+++++|++ ++.+|++|+.|+.|++|+.
T Consensus 665 ~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~----~~~~~~l~~~~gh~~~i~~v~~s~--~~~~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 665 SYVRFV-DSSTLVSSSTDNTLKLWDLSMSIS----GINETPLHSFMGHTNVKNFVGLSV--SDGYIATGSETNEVFVYHK 737 (793)
T ss_pred EEEEEe-CCCEEEEEECCCEEEEEeCCCCcc----ccCCcceEEEcCCCCCeeEEEEcC--CCCEEEEEeCCCEEEEEEC
Confidence 999997 678999999999999999975421 012235666778988899999999 8999999999999999997
Q ss_pred C
Q 048511 306 P 306 (351)
Q Consensus 306 ~ 306 (351)
.
T Consensus 738 ~ 738 (793)
T PLN00181 738 A 738 (793)
T ss_pred C
Confidence 5
No 51
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=9e-31 Score=229.93 Aligned_cols=264 Identities=16% Similarity=0.226 Sum_probs=187.7
Q ss_pred EEeee-ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccc---------ccceeeeEeee-
Q 048511 22 ACELK-GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTY---------RKEVISLASYI- 90 (351)
Q Consensus 22 ~~~~~-~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~~~~- 90 (351)
...+. +|.++|++|.|+ ++|+||||||.|+.|+||.+...+......... ...+..+....
T Consensus 259 ~Qe~~~ah~gaIw~mKFS--------~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~ 330 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFS--------HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEE 330 (712)
T ss_pred eeccccccCCcEEEEEeC--------CCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccc
Confidence 34566 899999999999 899999999999999999997633211000000 00000000000
Q ss_pred --cCCeEEe--c---------CC--ceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEec
Q 048511 91 --EGPVLVA--G---------SS--SYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQP 155 (351)
Q Consensus 91 --~~~~l~~--~---------~~--~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 155 (351)
.++.... + .. ...-+.+..+.||.+.|.+|.|+ ..++ |++++.|.+|++|++
T Consensus 331 ~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS-------Kn~f------LLSSSMDKTVRLWh~ 397 (712)
T KOG0283|consen 331 KISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS-------KNNF------LLSSSMDKTVRLWHP 397 (712)
T ss_pred cccccccccccccCCccccCCCccccccccchhhhhccchhheecccc-------cCCe------eEeccccccEEeecC
Confidence 0000000 0 00 01113456689999999999999 3456 999999999999999
Q ss_pred cCCCcceEEEEEeccccccccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCC
Q 048511 156 EKTTGIWMNVVTVGELSHSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSS 234 (351)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~ 234 (351)
.. ..++..|. |...|+|++|+| |.+|+++|+.|+.|+||++...+ +.....-...|++++|.|+|
T Consensus 398 ~~--~~CL~~F~------HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~------Vv~W~Dl~~lITAvcy~PdG 463 (712)
T KOG0283|consen 398 GR--KECLKVFS------HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK------VVDWNDLRDLITAVCYSPDG 463 (712)
T ss_pred CC--cceeeEEe------cCCeeEEEEecccCCCcEeecccccceEEeecCcCe------eEeehhhhhhheeEEeccCC
Confidence 98 88888885 889999999999 77899999999999999998853 22333334789999999999
Q ss_pred CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhce
Q 048511 235 DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTL 313 (351)
Q Consensus 235 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~ 313 (351)
++.+.|+.+|.+++|+....+... ......-..-+.....|+.+.|.|. +...+++.+.|..|||+|.. .+.+..|
T Consensus 464 k~avIGt~~G~C~fY~t~~lk~~~--~~~I~~~~~Kk~~~~rITG~Q~~p~-~~~~vLVTSnDSrIRI~d~~~~~lv~Kf 540 (712)
T KOG0283|consen 464 KGAVIGTFNGYCRFYDTEGLKLVS--DFHIRLHNKKKKQGKRITGLQFFPG-DPDEVLVTSNDSRIRIYDGRDKDLVHKF 540 (712)
T ss_pred ceEEEEEeccEEEEEEccCCeEEE--eeeEeeccCccccCceeeeeEecCC-CCCeEEEecCCCceEEEeccchhhhhhh
Confidence 999999999999999998776322 0011111111111237999999983 34468888899999999985 7788889
Q ss_pred eeccccccch
Q 048511 314 NHATFQESSF 323 (351)
Q Consensus 314 ~~~~~~~~~~ 323 (351)
+++.......
T Consensus 541 KG~~n~~SQ~ 550 (712)
T KOG0283|consen 541 KGFRNTSSQI 550 (712)
T ss_pred cccccCCcce
Confidence 9887665543
No 52
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=8.1e-31 Score=201.22 Aligned_cols=239 Identities=17% Similarity=0.224 Sum_probs=196.7
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+++.|.++.||-..+ | +.+-++.||++.|+|++.. .+.++|+||+.|.++++||+.+++.+....
T Consensus 27 scaKD~~~~vw~s~n-G--erlGty~GHtGavW~~Did--------~~s~~liTGSAD~t~kLWDv~tGk~la~~k---- 91 (327)
T KOG0643|consen 27 SCAKDSTPTVWYSLN-G--ERLGTYDGHTGAVWCCDID--------WDSKHLITGSADQTAKLWDVETGKQLATWK---- 91 (327)
T ss_pred EecCCCCceEEEecC-C--ceeeeecCCCceEEEEEec--------CCcceeeeccccceeEEEEcCCCcEEEEee----
Confidence 467899999998877 7 6788999999999999999 889999999999999999999998775444
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec-----CCeEEEEec
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM-----DKTMMIWQP 155 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~-----d~~i~iwd~ 155 (351)
-..+|..+.|+ .++++ ++.... .+.|.++|+
T Consensus 92 --------------------------------~~~~Vk~~~F~------~~gn~------~l~~tD~~mg~~~~v~~fdi 127 (327)
T KOG0643|consen 92 --------------------------------TNSPVKRVDFS------FGGNL------ILASTDKQMGYTCFVSVFDI 127 (327)
T ss_pred --------------------------------cCCeeEEEeec------cCCcE------EEEEehhhcCcceEEEEEEc
Confidence 34578899999 77776 555543 467999999
Q ss_pred cCCC-----cceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEe
Q 048511 156 EKTT-----GIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISW 230 (351)
Q Consensus 156 ~~~~-----~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~ 230 (351)
+..+ .++...+. .+...++.+-|.|-+++|++|..||.|..||.+++. +.+..-+.|...|+.+++
T Consensus 128 ~~~~~~~~s~ep~~kI~-----t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~----~~v~s~~~h~~~Ind~q~ 198 (327)
T KOG0643|consen 128 RDDSSDIDSEEPYLKIP-----TPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK----ELVDSDEEHSSKINDLQF 198 (327)
T ss_pred cCChhhhcccCceEEec-----CCccceeeeeecccCCEEEEecCCCcEEEEEcccCc----eeeechhhhccccccccc
Confidence 8532 22233333 566889999999999999999999999999999985 567777889999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEcCCCcccccc---------------------------------Ccc------------ceE
Q 048511 231 SRSSDYLLSVSHDQTTRVFAPWKNVASLM---------------------------------GEN------------SWH 265 (351)
Q Consensus 231 sp~~~~l~s~~~dg~i~vwd~~~~~~~~~---------------------------------~~~------------~~~ 265 (351)
+|+..++++++.|.+-++||+.+.....+ ..+ .-+
T Consensus 199 s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eE 278 (327)
T KOG0643|consen 199 SRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEE 278 (327)
T ss_pred cCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHH
Confidence 99999999999999999999977654332 000 012
Q ss_pred EeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchh
Q 048511 266 EVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSF 309 (351)
Q Consensus 266 ~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~ 309 (351)
++.+.++|-++|++++|+| +|...++|++||.||+.-...+.
T Consensus 279 EigrvkGHFGPINsvAfhP--dGksYsSGGEDG~VR~h~Fd~~Y 320 (327)
T KOG0643|consen 279 EIGRVKGHFGPINSVAFHP--DGKSYSSGGEDGYVRLHHFDSNY 320 (327)
T ss_pred HhccccccccCcceeEECC--CCcccccCCCCceEEEEEeccch
Confidence 4567789999999999999 99999999999999998776443
No 53
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.3e-29 Score=224.26 Aligned_cols=218 Identities=17% Similarity=0.222 Sum_probs=167.8
Q ss_pred eeeecCCceeEEEeeCCcccCCCC-CccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCce
Q 048511 24 ELKGHTDWIRSLDFSLPVCTSGEA-ISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSY 102 (351)
Q Consensus 24 ~~~~h~~~V~~l~~~~~~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 102 (351)
.+.+|.+.|++++|+ + ++++|++|+.|++|++||+.+........
T Consensus 70 ~l~GH~~~V~~v~fs--------P~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~-------------------------- 115 (493)
T PTZ00421 70 ILLGQEGPIIDVAFN--------PFDPQKLFTASEDGTIMGWGIPEEGLTQNIS-------------------------- 115 (493)
T ss_pred eEeCCCCCEEEEEEc--------CCCCCEEEEEeCCCEEEEEecCCCccccccC--------------------------
Confidence 478999999999999 6 78899999999999999997653211100
Q ss_pred eEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEE
Q 048511 103 QVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGH 182 (351)
Q Consensus 103 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 182 (351)
.....+.+|...|.+++|+| ...++ |++++.|++|+|||+++ +.....+. .|...|.+++
T Consensus 116 --~~l~~L~gH~~~V~~l~f~P-----~~~~i------LaSgs~DgtVrIWDl~t--g~~~~~l~-----~h~~~V~sla 175 (493)
T PTZ00421 116 --DPIVHLQGHTKKVGIVSFHP-----SAMNV------LASAGADMVVNVWDVER--GKAVEVIK-----CHSDQITSLE 175 (493)
T ss_pred --cceEEecCCCCcEEEEEeCc-----CCCCE------EEEEeCCCEEEEEECCC--CeEEEEEc-----CCCCceEEEE
Confidence 12245688999999999995 23467 99999999999999998 66555554 7888999999
Q ss_pred EcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccccccc-EEEEEeecCCCEEEEEe----CCCcEEEEcCCCcccc
Q 048511 183 WSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAA-VMDISWSRSSDYLLSVS----HDQTTRVFAPWKNVAS 257 (351)
Q Consensus 183 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~-v~~v~~sp~~~~l~s~~----~dg~i~vwd~~~~~~~ 257 (351)
|+|++.+|++++.|+.|++||++++ +.+..+.+|.+. +..+.|.+++..+++++ .|+.|++||+++...
T Consensus 176 ~spdG~lLatgs~Dg~IrIwD~rsg-----~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~- 249 (493)
T PTZ00421 176 WNLDGSLLCTTSKDKKLNIIDPRDG-----TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS- 249 (493)
T ss_pred EECCCCEEEEecCCCEEEEEECCCC-----cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC-
Confidence 9999999999999999999999987 456677788764 45678999887777654 479999999987641
Q ss_pred ccCccceEEecccccc-ccceeEEEEeeeCCCcEEEEec-CCCeEEEEecC-chhhh
Q 048511 258 LMGENSWHEVARPQVH-GHDINCVTIIQGKGNHRFVSGA-DEKVARVFEAP-LSFLK 311 (351)
Q Consensus 258 ~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~s~~-~dg~v~vw~~~-~~~~~ 311 (351)
.+.....+ ...+....|++ ++.+|++++ .|+.|++||+. +..+.
T Consensus 250 --------p~~~~~~d~~~~~~~~~~d~--d~~~L~lggkgDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 250 --------PYSTVDLDQSSALFIPFFDE--DTNLLYIGSKGEGNIRCFELMNERLTF 296 (493)
T ss_pred --------ceeEeccCCCCceEEEEEcC--CCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence 12211222 23355566777 888888877 59999999987 54443
No 54
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=2.3e-29 Score=211.76 Aligned_cols=248 Identities=26% Similarity=0.368 Sum_probs=205.2
Q ss_pred EeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCce
Q 048511 23 CELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSY 102 (351)
Q Consensus 23 ~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 102 (351)
.++.+|.++|++++|+ +++++|++++.||.|++|++.+....... ..+...+..+.+.++++.+++++.++
T Consensus 3 ~~~~~h~~~i~~~~~~--------~~~~~l~~~~~~g~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~ 73 (289)
T cd00200 3 RTLKGHTGGVTCVAFS--------PDGKLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAASADGTYLASGSSDK 73 (289)
T ss_pred hHhcccCCCEEEEEEc--------CCCCEEEEeecCcEEEEEEeeCCCcEEEE-ecCCcceeEEEECCCCCEEEEEcCCC
Confidence 4677999999999999 88999999999999999999877543333 23344566899999999999998888
Q ss_pred eEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccccc
Q 048511 103 QVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHS 174 (351)
Q Consensus 103 ~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 174 (351)
.+.++.. +..|...+.++.|+ +++.+ +++++.|+.|++||++. +.....+. .|
T Consensus 74 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~------~~~~~~~~~i~~~~~~~--~~~~~~~~-----~~ 134 (289)
T cd00200 74 TIRLWDLETGECVRTLTGHTSYVSSVAFS------PDGRI------LSSSSRDKTIKVWDVET--GKCLTTLR-----GH 134 (289)
T ss_pred eEEEEEcCcccceEEEeccCCcEEEEEEc------CCCCE------EEEecCCCeEEEEECCC--cEEEEEec-----cC
Confidence 8766543 45677889999999 56677 88888899999999997 55555554 67
Q ss_pred ccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCc
Q 048511 175 ALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKN 254 (351)
Q Consensus 175 ~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~ 254 (351)
...+.+++|+|++.++++++.++.|++||++.. ++...+..|...+.+++|+|+++.+++++.|+.|++||++..
T Consensus 135 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~ 209 (289)
T cd00200 135 TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG-----KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG 209 (289)
T ss_pred CCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc-----ccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC
Confidence 778999999999998888888999999999875 456677788889999999999999999999999999999876
Q ss_pred cccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceee
Q 048511 255 VASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNH 315 (351)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~ 315 (351)
. .+..+..|...+.+++|++ ++.++++++.|+.|++|++. +..+..+..
T Consensus 210 ~----------~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~ 259 (289)
T cd00200 210 K----------CLGTLRGHENGVNSVAFSP--DGYLLASGSEDGTIRVWDLRTGECVQTLSG 259 (289)
T ss_pred c----------eecchhhcCCceEEEEEcC--CCcEEEEEcCCCcEEEEEcCCceeEEEccc
Confidence 5 5555557777899999999 78888888889999999987 555555553
No 55
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=2.5e-31 Score=219.44 Aligned_cols=235 Identities=18% Similarity=0.247 Sum_probs=192.8
Q ss_pred EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511 20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS 99 (351)
Q Consensus 20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (351)
..+.++.||+..|+++.|. | ..+.+|++++.|+.|+||++....
T Consensus 205 k~~~~~~gH~kgvsai~~f----p---~~~hLlLS~gmD~~vklW~vy~~~----------------------------- 248 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWF----P---KKGHLLLSGGMDGLVKLWNVYDDR----------------------------- 248 (503)
T ss_pred hheeeccCCccccchhhhc----c---ceeeEEEecCCCceEEEEEEecCc-----------------------------
Confidence 3467899999999999999 2 378999999999999999998633
Q ss_pred CceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceE
Q 048511 100 SSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFY 179 (351)
Q Consensus 100 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~ 179 (351)
.+++++.+|..+|..++|+ .+|.. |++++.|+.|++||+++ |.++..+. ....++
T Consensus 249 -----~~lrtf~gH~k~Vrd~~~s------~~g~~------fLS~sfD~~lKlwDtET--G~~~~~f~------~~~~~~ 303 (503)
T KOG0282|consen 249 -----RCLRTFKGHRKPVRDASFN------NCGTS------FLSASFDRFLKLWDTET--GQVLSRFH------LDKVPT 303 (503)
T ss_pred -----ceehhhhcchhhhhhhhcc------ccCCe------eeeeecceeeeeecccc--ceEEEEEe------cCCCce
Confidence 2346778999999999999 89999 99999999999999999 98888876 344689
Q ss_pred EEEEcCCC-CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccc
Q 048511 180 GGHWSPDG-RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASL 258 (351)
Q Consensus 180 ~i~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~ 258 (351)
|+.|+|++ +.+++|+.|+.|+.||++++ +.++.+..|-+.|..+.|-++++++++.++|++++||+.+......
T Consensus 304 cvkf~pd~~n~fl~G~sd~ki~~wDiRs~-----kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik 378 (503)
T KOG0282|consen 304 CVKFHPDNQNIFLVGGSDKKIRQWDIRSG-----KVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIK 378 (503)
T ss_pred eeecCCCCCcEEEEecCCCcEEEEeccch-----HHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccch
Confidence 99999998 78999999999999999998 5688999999999999999999999999999999999986653221
Q ss_pred c----------------------------CccceE--------Eeccccccccc--eeEEEEeeeCCCcEEEEecCCCeE
Q 048511 259 M----------------------------GENSWH--------EVARPQVHGHD--INCVTIIQGKGNHRFVSGADEKVA 300 (351)
Q Consensus 259 ~----------------------------~~~~~~--------~~~~~~~~~~~--i~~~~~~~~~~~~~l~s~~~dg~v 300 (351)
. ....+. .-..+.+|... -..+.|+| ||.+|++|+.||.+
T Consensus 379 ~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp--DG~~l~SGdsdG~v 456 (503)
T KOG0282|consen 379 NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP--DGRTLCSGDSDGKV 456 (503)
T ss_pred hhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC--CCCeEEeecCCccE
Confidence 1 000000 11123344322 45678999 99999999999999
Q ss_pred EEEecC-chhhhceeeccccccc
Q 048511 301 RVFEAP-LSFLKTLNHATFQESS 322 (351)
Q Consensus 301 ~vw~~~-~~~~~~~~~~~~~~~~ 322 (351)
.+||.+ .+.+..++.|.+.-..
T Consensus 457 ~~wdwkt~kl~~~lkah~~~ci~ 479 (503)
T KOG0282|consen 457 NFWDWKTTKLVSKLKAHDQPCIG 479 (503)
T ss_pred EEeechhhhhhhccccCCcceEE
Confidence 999987 7888899888654433
No 56
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.2e-29 Score=194.13 Aligned_cols=258 Identities=17% Similarity=0.212 Sum_probs=211.8
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.|+++.||+++. .++..-....+|.+.|-.++|. | +..++|++++.|.+|++||++.+++...+.. .
T Consensus 37 sgs~dktv~v~n~e~-~r~~~~~~~~gh~~svdql~w~----~---~~~d~~atas~dk~ir~wd~r~~k~~~~i~~--~ 106 (313)
T KOG1407|consen 37 SGSFDKTVSVWNLER-DRFRKELVYRGHTDSVDQLCWD----P---KHPDLFATASGDKTIRIWDIRSGKCTARIET--K 106 (313)
T ss_pred ecccCCceEEEEecc-hhhhhhhcccCCCcchhhheeC----C---CCCcceEEecCCceEEEEEeccCcEEEEeec--c
Confidence 478999999999998 6666666788999999999999 3 4567999999999999999999988766554 3
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEecc-------ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESLLI-------GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW 153 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 153 (351)
....-+.|+|+|.++++++.+..+..+..-. .....+.-+.|+ .++.+ |+.....|.|.|.
T Consensus 107 ~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~------~~nd~------Fflt~GlG~v~IL 174 (313)
T KOG1407|consen 107 GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWN------NSNDL------FFLTNGLGCVEIL 174 (313)
T ss_pred CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeec------CCCCE------EEEecCCceEEEE
Confidence 4667889999999999999988876654322 123457888888 56666 6666777999999
Q ss_pred eccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC
Q 048511 154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS 233 (351)
Q Consensus 154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 233 (351)
.... -+.+..++ .|.....||.|+|+|+++|+|+.|-.+.+||++.- .+++.+..+.-+|+.+.|+.+
T Consensus 175 syps--Lkpv~si~-----AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL-----iC~R~isRldwpVRTlSFS~d 242 (313)
T KOG1407|consen 175 SYPS--LKPVQSIK-----AHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL-----ICERCISRLDWPVRTLSFSHD 242 (313)
T ss_pred eccc--cccccccc-----cCCcceEEEEECCCCceEeeccccceeeccChhHh-----hhheeeccccCceEEEEeccC
Confidence 8876 66666665 89999999999999999999999999999999885 778888889999999999999
Q ss_pred CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC---------CeEEEEe
Q 048511 234 SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE---------KVARVFE 304 (351)
Q Consensus 234 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---------g~v~vw~ 304 (351)
|++||++++|-.|-|=+++++. +.|+ . .+.++...++|+| ...+||-+.+| |.|++|-
T Consensus 243 g~~lASaSEDh~IDIA~vetGd------~~~e----I-~~~~~t~tVAWHP--k~~LLAyA~ddk~~d~~reag~vKiFG 309 (313)
T KOG1407|consen 243 GRMLASASEDHFIDIAEVETGD------RVWE----I-PCEGPTFTVAWHP--KRPLLAYACDDKDGDSNREAGTVKIFG 309 (313)
T ss_pred cceeeccCccceEEeEecccCC------eEEE----e-eccCCceeEEecC--CCceeeEEecCCCCccccccceeEEec
Confidence 9999999999999999999987 2332 2 3667789999999 78888766644 4566665
Q ss_pred c
Q 048511 305 A 305 (351)
Q Consensus 305 ~ 305 (351)
+
T Consensus 310 ~ 310 (313)
T KOG1407|consen 310 L 310 (313)
T ss_pred C
Confidence 4
No 57
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=5.8e-31 Score=200.25 Aligned_cols=257 Identities=18% Similarity=0.268 Sum_probs=213.2
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK 81 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~ 81 (351)
++.||.-.+-+-++ |.+ +-+|.||.++|++.... .+..+-|+++.|=+-++||.-++..+..+.. ..
T Consensus 35 a~kd~~pmlr~g~t-gdw--igtfeghkgavw~~~l~--------~na~~aasaaadftakvw~a~tgdelhsf~h--kh 101 (334)
T KOG0278|consen 35 ASKDGKPMLRNGDT-GDW--IGTFEGHKGAVWSATLN--------KNATRAASAAADFTAKVWDAVTGDELHSFEH--KH 101 (334)
T ss_pred eccCCCchhccCCC-CCc--EEeeeccCcceeeeecC--------chhhhhhhhcccchhhhhhhhhhhhhhhhhh--hh
Confidence 45566666666666 644 67999999999999999 7888899999999999999999887765553 34
Q ss_pred ceeeeEeeecCCeEEecCCceeEEEEE---------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511 82 EVISLASYIEGPVLVAGSSSYQVSVES---------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI 152 (351)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i 152 (351)
-+.+++|+.+.+.|++|+.+..+++.. .+.+|.+.|..+.|. ...+. +++++.|++||+
T Consensus 102 ivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc------~eD~~------iLSSadd~tVRL 169 (334)
T KOG0278|consen 102 IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWC------HEDKC------ILSSADDKTVRL 169 (334)
T ss_pred eeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEe------ccCce------EEeeccCCceEE
Confidence 678999999999999999877665432 367899999999999 66677 899999999999
Q ss_pred EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511 153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR 232 (351)
Q Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 232 (351)
||.++ +..++.+. ...+|.++.++++|++|.+ ...+.|.+||..+- .+++.++ -...|.+..++|
T Consensus 170 WD~rT--gt~v~sL~------~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf-----~~lKs~k-~P~nV~SASL~P 234 (334)
T KOG0278|consen 170 WDHRT--GTEVQSLE------FNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSF-----GLLKSYK-MPCNVESASLHP 234 (334)
T ss_pred EEecc--CcEEEEEe------cCCCCcceeeccCCCEEEE-ecCceeEEeccccc-----cceeecc-CccccccccccC
Confidence 99999 88887775 3557999999999986655 45677999999874 4565554 356789999999
Q ss_pred CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccc-cccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhh
Q 048511 233 SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARP-QVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFL 310 (351)
Q Consensus 233 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~ 310 (351)
+...+++|++|..++.||+.++. .+..+ ++|.++|.|+.|+| +|...++||+||+||+|... ++..
T Consensus 235 ~k~~fVaGged~~~~kfDy~Tge----------Ei~~~nkgh~gpVhcVrFSP--dGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 235 KKEFFVAGGEDFKVYKFDYNTGE----------EIGSYNKGHFGPVHCVRFSP--DGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CCceEEecCcceEEEEEeccCCc----------eeeecccCCCCceEEEEECC--CCceeeccCCCceEEEEEecCCCch
Confidence 99999999999999999999998 55553 78999999999999 99999999999999999975 4443
No 58
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.7e-29 Score=240.23 Aligned_cols=238 Identities=16% Similarity=0.185 Sum_probs=184.5
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.||+|++||+.+ + ..+..+.+|.+.|++++|+ | .++.+|+||+.|++|++||+.++....
T Consensus 550 s~~~Dg~v~lWd~~~-~--~~~~~~~~H~~~V~~l~~~----p---~~~~~L~Sgs~Dg~v~iWd~~~~~~~~------- 612 (793)
T PLN00181 550 SSNFEGVVQVWDVAR-S--QLVTEMKEHEKRVWSIDYS----S---ADPTLLASGSDDGSVKLWSINQGVSIG------- 612 (793)
T ss_pred EEeCCCeEEEEECCC-C--eEEEEecCCCCCEEEEEEc----C---CCCCEEEEEcCCCEEEEEECCCCcEEE-------
Confidence 467899999999988 6 4567889999999999999 2 367899999999999999998764332
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG 160 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 160 (351)
.+. +...|.++.|.+ +++.+ |++|+.|+.|++||++. .
T Consensus 613 ----------------------------~~~-~~~~v~~v~~~~-----~~g~~------latgs~dg~I~iwD~~~--~ 650 (793)
T PLN00181 613 ----------------------------TIK-TKANICCVQFPS-----ESGRS------LAFGSADHKVYYYDLRN--P 650 (793)
T ss_pred ----------------------------EEe-cCCCeEEEEEeC-----CCCCE------EEEEeCCCeEEEEECCC--C
Confidence 122 235689999975 67888 99999999999999987 3
Q ss_pred c-eEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcc-cCcccccccccccccEEEEEeecCCCEEE
Q 048511 161 I-WMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDI-DNWQPQKVPSGHFAAVMDISWSRSSDYLL 238 (351)
Q Consensus 161 ~-~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~~~~~v~~v~~sp~~~~l~ 238 (351)
. ....+. +|...|.++.|. ++.+|++++.|++|++||++.... ....++..+.+|...+..++|+|++.+|+
T Consensus 651 ~~~~~~~~-----~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~la 724 (793)
T PLN00181 651 KLPLCTMI-----GHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIA 724 (793)
T ss_pred CccceEec-----CCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEE
Confidence 2 233333 788899999997 678999999999999999975321 11245778889999999999999999999
Q ss_pred EEeCCCcEEEEcCCCcccccc-CccceEEec--cccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511 239 SVSHDQTTRVFAPWKNVASLM-GENSWHEVA--RPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA 305 (351)
Q Consensus 239 s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~ 305 (351)
+|+.|+.|++|+......... .......+. ....+...|.+++|++ ++..|++|+.||.|+||++
T Consensus 725 sgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~--~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 725 TGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG--QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC--CCCeEEEecCCCcEEEEec
Confidence 999999999999765431000 000000010 1123455699999999 8999999999999999985
No 59
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=6.2e-30 Score=226.67 Aligned_cols=228 Identities=23% Similarity=0.319 Sum_probs=199.9
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.|++|++|+..+ +. .....+.||.+.|+++++. ..+++|++|+.|.++++||..++++.
T Consensus 223 ~~s~~~tl~~~~~~~-~~-~i~~~l~GH~g~V~~l~~~--------~~~~~lvsgS~D~t~rvWd~~sg~C~-------- 284 (537)
T KOG0274|consen 223 SGSDDSTLHLWDLNN-GY-LILTRLVGHFGGVWGLAFP--------SGGDKLVSGSTDKTERVWDCSTGECT-------- 284 (537)
T ss_pred ecCCCceeEEeeccc-ce-EEEeeccCCCCCceeEEEe--------cCCCEEEEEecCCcEEeEecCCCcEE--------
Confidence 478899999999998 63 3444499999999999998 77889999999999999999988655
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG 160 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 160 (351)
..+.+|...|.++...+ .. +++|+.|.+|++|++++ +
T Consensus 285 ---------------------------~~l~gh~stv~~~~~~~--------~~------~~sgs~D~tVkVW~v~n--~ 321 (537)
T KOG0274|consen 285 ---------------------------HSLQGHTSSVRCLTIDP--------FL------LVSGSRDNTVKVWDVTN--G 321 (537)
T ss_pred ---------------------------EEecCCCceEEEEEccC--------ce------EeeccCCceEEEEeccC--c
Confidence 45678999999998773 33 88889999999999998 8
Q ss_pred ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE
Q 048511 161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV 240 (351)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~ 240 (351)
..+..+. +|..+|.++..+ +.++++|+.|++|++||+.+. ++++.+.+|...|.++.+.+. ..+++|
T Consensus 322 ~~l~l~~-----~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~-----~cl~sl~gH~~~V~sl~~~~~-~~~~Sg 388 (537)
T KOG0274|consen 322 ACLNLLR-----GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG-----KCLKSLSGHTGRVYSLIVDSE-NRLLSG 388 (537)
T ss_pred ceEEEec-----cccccEEEEEec--CCEEEEEecCceEEEEEhhhc-----eeeeeecCCcceEEEEEecCc-ceEEee
Confidence 8887776 699999999997 889999999999999999976 789999999999999988765 789999
Q ss_pred eCCCcEEEEcCCCc-cccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeec
Q 048511 241 SHDQTTRVFAPWKN-VASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHA 316 (351)
Q Consensus 241 ~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~ 316 (351)
+.|++|++||+++. + ++..+.+|..-+..+.+ .+++|++++.|+.|++||.. +++++++++.
T Consensus 389 s~D~~IkvWdl~~~~~----------c~~tl~~h~~~v~~l~~----~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~ 452 (537)
T KOG0274|consen 389 SLDTTIKVWDLRTKRK----------CIHTLQGHTSLVSSLLL----RDNFLVSSSADGTIKLWDAEEGECLRTLEGR 452 (537)
T ss_pred eeccceEeecCCchhh----------hhhhhcCCccccccccc----ccceeEeccccccEEEeecccCceeeeeccC
Confidence 99999999999888 5 77788889888877766 46899999999999999976 8888888874
No 60
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=2.4e-31 Score=211.39 Aligned_cols=206 Identities=22% Similarity=0.339 Sum_probs=179.9
Q ss_pred cCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEE
Q 048511 28 HTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVE 107 (351)
Q Consensus 28 h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 107 (351)
....|.|+.+. ...+++|..|.+|+|||.++..++
T Consensus 196 ~skgVYClQYD----------D~kiVSGlrDnTikiWD~n~~~c~----------------------------------- 230 (499)
T KOG0281|consen 196 NSKGVYCLQYD----------DEKIVSGLRDNTIKIWDKNSLECL----------------------------------- 230 (499)
T ss_pred cCCceEEEEec----------chhhhcccccCceEEeccccHHHH-----------------------------------
Confidence 35689999998 668999999999999999876544
Q ss_pred EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCC
Q 048511 108 SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG 187 (351)
Q Consensus 108 ~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 187 (351)
..+.||++.|.|+.|. .+. +++|+.|.+|++||.++ +++++++. +|...|..+.|+ +
T Consensus 231 ~~L~GHtGSVLCLqyd--------~rv------iisGSSDsTvrvWDv~t--ge~l~tli-----hHceaVLhlrf~--n 287 (499)
T KOG0281|consen 231 KILTGHTGSVLCLQYD--------ERV------IVSGSSDSTVRVWDVNT--GEPLNTLI-----HHCEAVLHLRFS--N 287 (499)
T ss_pred HhhhcCCCcEEeeecc--------ceE------EEecCCCceEEEEeccC--CchhhHHh-----hhcceeEEEEEe--C
Confidence 4568999999999987 236 99999999999999999 88887776 888899999995 4
Q ss_pred CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEe
Q 048511 188 RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEV 267 (351)
Q Consensus 188 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 267 (351)
.++++++.|.++.+||+..... ..+...+.+|...|+.+.|+ .+++++++.|.+|++|++.+.+ .+
T Consensus 288 g~mvtcSkDrsiaVWdm~sps~--it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~e----------fv 353 (499)
T KOG0281|consen 288 GYMVTCSKDRSIAVWDMASPTD--ITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCE----------FV 353 (499)
T ss_pred CEEEEecCCceeEEEeccCchH--HHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEecccee----------ee
Confidence 6899999999999999976531 25667788999999999996 5699999999999999998876 78
Q ss_pred ccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecccc
Q 048511 268 ARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATFQ 319 (351)
Q Consensus 268 ~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~ 319 (351)
..+.+|...|.|+.+ .++++++|+.|.+||+||+. |.+++.|++|...
T Consensus 354 Rtl~gHkRGIAClQY----r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeL 402 (499)
T KOG0281|consen 354 RTLNGHKRGIACLQY----RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL 402 (499)
T ss_pred hhhhcccccceehhc----cCeEEEecCCCceEEEEeccccHHHHHHhchHHh
Confidence 888999999999988 57999999999999999998 9999999999754
No 61
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=5.7e-30 Score=213.08 Aligned_cols=259 Identities=21% Similarity=0.305 Sum_probs=194.8
Q ss_pred EEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccc----ceeecccccceeeeEeeecCCeEE
Q 048511 21 RACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSS----ANTQSTYRKEVISLASYIEGPVLV 96 (351)
Q Consensus 21 ~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~ 96 (351)
....+++|+..|.++++. +.|.+|+|||.|-+|++||+...... ..+.......+.++.|++.|..++
T Consensus 159 hEi~l~hgtk~Vsal~~D--------p~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iL 230 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVD--------PSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQIL 230 (641)
T ss_pred ceEeccCCceEEEEeeec--------CCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEE
Confidence 345788999999999999 88999999999999999999865432 223333356788999999988766
Q ss_pred ecCCceeEEE--------------------EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEecc
Q 048511 97 AGSSSYQVSV--------------------ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPE 156 (351)
Q Consensus 97 ~~~~~~~~~~--------------------~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 156 (351)
+.......++ ...-+||...++|.+|+| .+.+. |++++.||+++|||+.
T Consensus 231 vvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP-----~~k~~------FlT~s~DgtlRiWdv~ 299 (641)
T KOG0772|consen 231 VVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHP-----DNKEE------FLTCSYDGTLRIWDVN 299 (641)
T ss_pred EEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeecccccc-----Ccccc------eEEecCCCcEEEEecC
Confidence 6433322222 223578999999999998 45556 9999999999999998
Q ss_pred CCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccc--cEEEEEeecCC
Q 048511 157 KTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFA--AVMDISWSRSS 234 (351)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~--~v~~v~~sp~~ 234 (351)
... .....++.....+...++++++|+|+++.||+|+.||.|.+|+......+ .....-.+|.. .|++|.||++|
T Consensus 300 ~~k-~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~--p~~~vk~AH~~g~~Itsi~FS~dg 376 (641)
T KOG0772|consen 300 NTK-SQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR--PVMKVKDAHLPGQDITSISFSYDG 376 (641)
T ss_pred Cch-hheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc--cceEeeeccCCCCceeEEEecccc
Confidence 742 33344444444456668899999999999999999999999998553321 11233346766 89999999999
Q ss_pred CEEEEEeCCCcEEEEcCCCcccccc-----------------------------------------CccceEEecccccc
Q 048511 235 DYLLSVSHDQTTRVFAPWKNVASLM-----------------------------------------GENSWHEVARPQVH 273 (351)
Q Consensus 235 ~~l~s~~~dg~i~vwd~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~ 273 (351)
++|++-+.|+++++||+++.+.... ...++..+.++...
T Consensus 377 ~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~ 456 (641)
T KOG0772|consen 377 NYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS 456 (641)
T ss_pred chhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC
Confidence 9999999999999999987654332 11223334444444
Q ss_pred ccceeEEEEeeeCCCcEEEEecCCCeEEEE
Q 048511 274 GHDINCVTIIQGKGNHRFVSGADEKVARVF 303 (351)
Q Consensus 274 ~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw 303 (351)
+..|..+.|+| .-+.|.+|+.||.++||
T Consensus 457 ~aSvv~~~Whp--kLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 457 TASVVRCLWHP--KLNQIFAGSGDGTAHVY 484 (641)
T ss_pred CceEEEEeecc--hhhheeeecCCCceEEE
Confidence 56688899999 77888889999999986
No 62
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=5.8e-31 Score=207.57 Aligned_cols=260 Identities=17% Similarity=0.226 Sum_probs=221.3
Q ss_pred CCCCCceEEEEEccCCCceEE------EEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccce
Q 048511 1 MGGLDNKIHLYRGQRTGKFVR------ACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSAN 74 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~------~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~ 74 (351)
+|+.||-|.|||..+ |++.. ...+--|.++|.|+.|+ .+...||+|+.||.|++|.+.++.++..
T Consensus 230 sgSvDGFiEVWny~~-GKlrKDLkYQAqd~fMMmd~aVlci~FS--------RDsEMlAsGsqDGkIKvWri~tG~ClRr 300 (508)
T KOG0275|consen 230 SGSVDGFIEVWNYTT-GKLRKDLKYQAQDNFMMMDDAVLCISFS--------RDSEMLASGSQDGKIKVWRIETGQCLRR 300 (508)
T ss_pred eccccceeeeehhcc-chhhhhhhhhhhcceeecccceEEEeec--------ccHHHhhccCcCCcEEEEEEecchHHHH
Confidence 589999999999988 65433 23345578899999999 8899999999999999999999999999
Q ss_pred eecccccceeeeEeeecCCeEEecCCceeEEE--------EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec
Q 048511 75 TQSTYRKEVISLASYIEGPVLVAGSSSYQVSV--------ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM 146 (351)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~ 146 (351)
....+...+.++.|+.|+..+.+++.+..+++ .+.+.||...|+...|. ++|.. +++++.
T Consensus 301 FdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft------~dG~~------iisaSs 368 (508)
T KOG0275|consen 301 FDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFT------DDGHH------IISASS 368 (508)
T ss_pred hhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEc------CCCCe------EEEecC
Confidence 99899999999999999999999988877754 45688999999999999 89999 999999
Q ss_pred CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCC-CCEEEEEeeCCeEEEEEcccCcccCccccccccc---cc
Q 048511 147 DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD-GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG---HF 222 (351)
Q Consensus 147 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~---~~ 222 (351)
||+|++|+.++ .+++.+++. .+...+|.++..-|. ...++++...+++++.++... .++.+.. ..
T Consensus 369 DgtvkvW~~Kt--teC~~Tfk~---~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ------vVrsfsSGkREg 437 (508)
T KOG0275|consen 369 DGTVKVWHGKT--TECLSTFKP---LGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ------VVRSFSSGKREG 437 (508)
T ss_pred CccEEEecCcc--hhhhhhccC---CCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce------EEeeeccCCccC
Confidence 99999999999 888888773 345667888887774 468999999999999998873 4554432 23
Q ss_pred ccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEE
Q 048511 223 AAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARV 302 (351)
Q Consensus 223 ~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~v 302 (351)
+...+.+.+|.|.++.+.++|+.++.|.+.++. .-..+..|...+..++-+| ..++||+-++||.+++
T Consensus 438 GdFi~~~lSpkGewiYcigED~vlYCF~~~sG~----------LE~tl~VhEkdvIGl~HHP--HqNllAsYsEDgllKL 505 (508)
T KOG0275|consen 438 GDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK----------LERTLPVHEKDVIGLTHHP--HQNLLASYSEDGLLKL 505 (508)
T ss_pred CceEEEEecCCCcEEEEEccCcEEEEEEeecCc----------eeeeeecccccccccccCc--ccchhhhhcccchhhh
Confidence 445667889999999999999999999998887 4445567888899999999 8899999999999999
Q ss_pred Ee
Q 048511 303 FE 304 (351)
Q Consensus 303 w~ 304 (351)
|.
T Consensus 506 Wk 507 (508)
T KOG0275|consen 506 WK 507 (508)
T ss_pred cC
Confidence 96
No 63
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1e-28 Score=211.52 Aligned_cols=253 Identities=18% Similarity=0.276 Sum_probs=212.3
Q ss_pred CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccccee
Q 048511 5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 84 (351)
...|++|+..+ ++...+..+. ...|+++.|+ ++|.+|+.|..+|.|.|||..+.+....+...+...+-
T Consensus 196 g~~vylW~~~s-~~v~~l~~~~--~~~vtSv~ws--------~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg 264 (484)
T KOG0305|consen 196 GQSVYLWSASS-GSVTELCSFG--EELVTSVKWS--------PDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVG 264 (484)
T ss_pred cceEEEEecCC-CceEEeEecC--CCceEEEEEC--------CCCCEEEEeecCCeEEEEehhhccccccccCCcCceeE
Confidence 45799999999 7655555554 8899999999 89999999999999999999988877777665677788
Q ss_pred eeEeeecCCeEEecCCceeEEEEE---------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEec
Q 048511 85 SLASYIEGPVLVAGSSSYQVSVES---------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQP 155 (351)
Q Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 155 (351)
+++|. +..+.+|..++.+.... .+.+|...|..++|+ +|+++ ||+|+.|+.+.|||.
T Consensus 265 ~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws------~d~~~------lASGgnDN~~~Iwd~ 330 (484)
T KOG0305|consen 265 SLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS------PDGNQ------LASGGNDNVVFIWDG 330 (484)
T ss_pred EEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC------CCCCe------eccCCCccceEeccC
Confidence 88888 77888888888774432 377899999999999 89999 999999999999999
Q ss_pred cCCCcceEEEEEeccccccccceEEEEEcC-CCCEEEEEe--eCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511 156 EKTTGIWMNVVTVGELSHSALGFYGGHWSP-DGRSILAHG--YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR 232 (351)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 232 (351)
.. ......+. .|...|..++|+| ....||+|+ .|+.|++||..++ ..+..+. ..+.|.+|.|++
T Consensus 331 ~~--~~p~~~~~-----~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-----~~i~~vd-tgsQVcsL~Wsk 397 (484)
T KOG0305|consen 331 LS--PEPKFTFT-----EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG-----ARIDSVD-TGSQVCSLIWSK 397 (484)
T ss_pred CC--ccccEEEe-----ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC-----cEecccc-cCCceeeEEEcC
Confidence 66 55555555 8999999999999 456788866 6899999999987 4455554 456899999999
Q ss_pred CCCEEEEE--eCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511 233 SSDYLLSV--SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 233 ~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 307 (351)
..+-|+++ -.+..|.||++.+.+ .+..+.+|...|..++++| |+..+++|+.|.++++|++-.
T Consensus 398 ~~kEi~sthG~s~n~i~lw~~ps~~----------~~~~l~gH~~RVl~la~SP--dg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 398 KYKELLSTHGYSENQITLWKYPSMK----------LVAELLGHTSRVLYLALSP--DGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CCCEEEEecCCCCCcEEEEeccccc----------eeeeecCCcceeEEEEECC--CCCEEEEecccCcEEeccccC
Confidence 88766654 347799999997765 7788889999999999999 999999999999999999653
No 64
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=7.5e-29 Score=214.94 Aligned_cols=273 Identities=18% Similarity=0.232 Sum_probs=221.9
Q ss_pred CCceEEEEEccCCCce------EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeec
Q 048511 4 LDNKIHLYRGQRTGKF------VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQS 77 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~------~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~ 77 (351)
.+++|..|.++..++. ....++.||...|.+++++ .+...++||+ .+.|++|+..+.+++..+..
T Consensus 342 ~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS--------~d~~~~~Sga-~~SikiWn~~t~kciRTi~~ 412 (888)
T KOG0306|consen 342 ANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVS--------SDSILLASGA-GESIKIWNRDTLKCIRTITC 412 (888)
T ss_pred ecCceEEEEeccCCCCCccccccceeeeccchhheeEEEee--------cCceeeeecC-CCcEEEEEccCcceeEEecc
Confidence 3566777766541111 1124677999999999999 7777777776 56899999999998887765
Q ss_pred ccccceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCe
Q 048511 78 TYRKEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT 149 (351)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~ 149 (351)
. .+.+..|.|.++++++|...+.+.+.. ...+|.+.+++++.+ ||+.. +++||.|.+
T Consensus 413 ~---y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~------pD~~g------~vT~saDkt 477 (888)
T KOG0306|consen 413 G---YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLS------PDNKG------FVTGSADKT 477 (888)
T ss_pred c---cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeec------CCCCc------eEEecCCcE
Confidence 4 778888999999999999999876654 467899999999999 78888 999999999
Q ss_pred EEEEeccCCC---cceEEEEEec--cccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccccccc
Q 048511 150 MMIWQPEKTT---GIWMNVVTVG--ELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAA 224 (351)
Q Consensus 150 i~iwd~~~~~---~~~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~ 224 (351)
|++||..... +...+.+.+. ..-.-+..|.|+.+|||+++|+++--|.++++|-+++- +....+.+|.-+
T Consensus 478 VkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl-----KFflsLYGHkLP 552 (888)
T KOG0306|consen 478 VKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL-----KFFLSLYGHKLP 552 (888)
T ss_pred EEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce-----eeeeeecccccc
Confidence 9999986411 1111111111 11134567999999999999999999999999999985 567789999999
Q ss_pred EEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511 225 VMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE 304 (351)
Q Consensus 225 v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~ 304 (351)
|.++..+||++.++|||.|++|+||-+.-+. +...+.+|...|.++.|.| ...++.++|.|+.|+-||
T Consensus 553 V~smDIS~DSklivTgSADKnVKiWGLdFGD----------CHKS~fAHdDSvm~V~F~P--~~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 553 VLSMDISPDSKLIVTGSADKNVKIWGLDFGD----------CHKSFFAHDDSVMSVQFLP--KTHLFFTCGKDGKVKQWD 620 (888)
T ss_pred eeEEeccCCcCeEEeccCCCceEEeccccch----------hhhhhhcccCceeEEEEcc--cceeEEEecCcceEEeec
Confidence 9999999999999999999999999998887 6667779999999999999 899999999999999999
Q ss_pred cC-chhhhceeecc
Q 048511 305 AP-LSFLKTLNHAT 317 (351)
Q Consensus 305 ~~-~~~~~~~~~~~ 317 (351)
-. -..++.+.+|.
T Consensus 621 g~kFe~iq~L~~H~ 634 (888)
T KOG0306|consen 621 GEKFEEIQKLDGHH 634 (888)
T ss_pred hhhhhhheeeccch
Confidence 65 56677777765
No 65
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-29 Score=199.70 Aligned_cols=259 Identities=22% Similarity=0.318 Sum_probs=204.9
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccccee--ecc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANT--QST 78 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~--~~~ 78 (351)
+++.|.+-+||.+++ + .++.++.||.+.|++|+|+ +.+.+++|++.|++-.||...-.-..... ...
T Consensus 165 tASADhTA~iWs~Es-g--~CL~~Y~GH~GSVNsikfh--------~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~ 233 (481)
T KOG0300|consen 165 TASADHTARIWSLES-G--ACLATYTGHTGSVNSIKFH--------NSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSD 233 (481)
T ss_pred ecccccceeEEeecc-c--cceeeecccccceeeEEec--------cccceEEEccCCcchHHHHHhhcCcCCCCCCCCC
Confidence 578899999999999 8 6788999999999999999 88999999999999999984211111000 000
Q ss_pred c-----------ccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC
Q 048511 79 Y-----------RKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD 147 (351)
Q Consensus 79 ~-----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d 147 (351)
+ ......-....+|..+ -.....+.+|...|.+..|. ..++. +++++.|
T Consensus 234 hSsEeE~e~sDe~~~d~d~~~~sD~~ti--------RvPl~~ltgH~~vV~a~dWL------~gg~Q------~vTaSWD 293 (481)
T KOG0300|consen 234 HSSEEEEEHSDEHNRDTDSSEKSDGHTI--------RVPLMRLTGHRAVVSACDWL------AGGQQ------MVTASWD 293 (481)
T ss_pred CCchhhhhcccccccccccccccCCcee--------eeeeeeeeccccceEehhhh------cCcce------eeeeecc
Confidence 0 0000000011111111 12345688999999999999 78888 9999999
Q ss_pred CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEE
Q 048511 148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD 227 (351)
Q Consensus 148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~ 227 (351)
.+..+||+++ ++.+..+. +|....+.++-+|..+++++++.|.+.++||++..- +.+..|++|...|++
T Consensus 294 RTAnlwDVEt--ge~v~~Lt-----GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI----~sV~VFQGHtdtVTS 362 (481)
T KOG0300|consen 294 RTANLWDVET--GEVVNILT-----GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI----QSVAVFQGHTDTVTS 362 (481)
T ss_pred ccceeeeecc--Cceecccc-----CcchhccccccCCcceEEEEeccCceeEeccchhhc----ceeeeecccccceeE
Confidence 9999999999 88877766 899999999999999999999999999999998652 668899999999999
Q ss_pred EEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511 228 ISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 228 v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 307 (351)
+.|..+. .+++|+.|.+|+|||+++... ++..+. ...+++.++++. ++..|+.--++..||+||++|
T Consensus 363 ~vF~~dd-~vVSgSDDrTvKvWdLrNMRs---------plATIR-tdS~~NRvavs~--g~~iIAiPhDNRqvRlfDlnG 429 (481)
T KOG0300|consen 363 VVFNTDD-RVVSGSDDRTVKVWDLRNMRS---------PLATIR-TDSPANRVAVSK--GHPIIAIPHDNRQVRLFDLNG 429 (481)
T ss_pred EEEecCC-ceeecCCCceEEEeeeccccC---------cceeee-cCCccceeEeec--CCceEEeccCCceEEEEecCC
Confidence 9999875 588999999999999998773 344432 346689999998 677888888999999999998
Q ss_pred hhhhcee
Q 048511 308 SFLKTLN 314 (351)
Q Consensus 308 ~~~~~~~ 314 (351)
..+..|.
T Consensus 430 ~RlaRlP 436 (481)
T KOG0300|consen 430 NRLARLP 436 (481)
T ss_pred CccccCC
Confidence 8777665
No 66
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.5e-28 Score=213.15 Aligned_cols=254 Identities=15% Similarity=0.183 Sum_probs=221.7
Q ss_pred CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511 4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV 83 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 83 (351)
..++|+||+.++ . ++++++.. +-+.+..|. |.++++++|...|.+.++|+.....+..+. .+...+
T Consensus 392 a~~SikiWn~~t-~--kciRTi~~--~y~l~~~Fv--------pgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~-AHdgaI 457 (888)
T KOG0306|consen 392 AGESIKIWNRDT-L--KCIRTITC--GYILASKFV--------PGDRYIVLGTKNGELQVFDLASASLVETIR-AHDGAI 457 (888)
T ss_pred CCCcEEEEEccC-c--ceeEEecc--ccEEEEEec--------CCCceEEEeccCCceEEEEeehhhhhhhhh-ccccce
Confidence 467999999997 5 66777763 488999999 889999999999999999999876665554 667889
Q ss_pred eeeEeeecCCeEEecCCceeEEEEEec-------------c-------ccccceEEEEecCCCCCCCCCcccCCCceeEE
Q 048511 84 ISLASYIEGPVLVAGSSSYQVSVESLL-------------I-------GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILS 143 (351)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~-------------~-------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s 143 (351)
.+++.+|++..+++++.+..+++|..- . .-.+.|.|+.++ ||+++ |+.
T Consensus 458 Wsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S------pdgk~------LaV 525 (888)
T KOG0306|consen 458 WSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVS------PDGKL------LAV 525 (888)
T ss_pred eeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEc------CCCcE------EEE
Confidence 999999999999999999988776531 1 123578999999 89999 999
Q ss_pred eecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccc
Q 048511 144 ASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFA 223 (351)
Q Consensus 144 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 223 (351)
+--|++|+||-+.+ -+..-.+ -+|..+|.|+..+||++.+++|+.|..|++|-++-+ .|.+.+.+|..
T Consensus 526 sLLdnTVkVyflDt--lKFflsL-----YGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG-----DCHKS~fAHdD 593 (888)
T KOG0306|consen 526 SLLDNTVKVYFLDT--LKFFLSL-----YGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG-----DCHKSFFAHDD 593 (888)
T ss_pred EeccCeEEEEEecc--eeeeeee-----cccccceeEEeccCCcCeEEeccCCCceEEeccccc-----hhhhhhhcccC
Confidence 99999999999988 4433333 389999999999999999999999999999999988 57899999999
Q ss_pred cEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEE
Q 048511 224 AVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVF 303 (351)
Q Consensus 224 ~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw 303 (351)
.|+++.|.|....+++++.|+.|+-||-.... .+..+.+|...|+|++..| +|.+++++|.|..||+|
T Consensus 594 Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe----------~iq~L~~H~~ev~cLav~~--~G~~vvs~shD~sIRlw 661 (888)
T KOG0306|consen 594 SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE----------EIQKLDGHHSEVWCLAVSP--NGSFVVSSSHDKSIRLW 661 (888)
T ss_pred ceeEEEEcccceeEEEecCcceEEeechhhhh----------hheeeccchheeeeeEEcC--CCCeEEeccCCceeEee
Confidence 99999999999999999999999999976655 7888889999999999999 99999999999999999
Q ss_pred ecCc
Q 048511 304 EAPL 307 (351)
Q Consensus 304 ~~~~ 307 (351)
....
T Consensus 662 E~td 665 (888)
T KOG0306|consen 662 ERTD 665 (888)
T ss_pred eccC
Confidence 9664
No 67
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.6e-30 Score=219.11 Aligned_cols=238 Identities=19% Similarity=0.281 Sum_probs=199.8
Q ss_pred CCCCCceEEEEEccCCCc---eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeec
Q 048511 1 MGGLDNKIHLYRGQRTGK---FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQS 77 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~---~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~ 77 (351)
|||.||.|++|++..... -.....++.|.+.|+.+... .+++.|+++|.|-+|++|+......
T Consensus 42 TgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~--------~~~~tlIS~SsDtTVK~W~~~~~~~------ 107 (735)
T KOG0308|consen 42 TGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILC--------GNGKTLISASSDTTVKVWNAHKDNT------ 107 (735)
T ss_pred ecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhh--------cCCCceEEecCCceEEEeecccCcc------
Confidence 689999999999876221 12467889999999999999 8899999999999999999987641
Q ss_pred ccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC
Q 048511 78 TYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK 157 (351)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 157 (351)
-+.+++..|.+.|.|+++-. ++..+ +|+|+-|+.|.+||+..
T Consensus 108 ---------------------------~c~stir~H~DYVkcla~~a-----k~~~l------vaSgGLD~~IflWDin~ 149 (735)
T KOG0308|consen 108 ---------------------------FCMSTIRTHKDYVKCLAYIA-----KNNEL------VASGGLDRKIFLWDINT 149 (735)
T ss_pred ---------------------------hhHhhhhcccchheeeeecc-----cCcee------EEecCCCccEEEEEccC
Confidence 12245677999999999932 67778 99999999999999997
Q ss_pred CCcceEE---EEEecccc-ccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC
Q 048511 158 TTGIWMN---VVTVGELS-HSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS 233 (351)
Q Consensus 158 ~~~~~~~---~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 233 (351)
.....+. ........ ++..+|++++.++.+..+++|+..+.+++||.++. +.+..+.+|...|..+..++|
T Consensus 150 ~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~-----~kimkLrGHTdNVr~ll~~dD 224 (735)
T KOG0308|consen 150 GTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC-----KKIMKLRGHTDNVRVLLVNDD 224 (735)
T ss_pred cchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccc-----cceeeeeccccceEEEEEcCC
Confidence 3212221 22222233 77889999999999999999999999999999997 457788899999999999999
Q ss_pred CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511 234 SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 234 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 307 (351)
|..+++++.||+|++||+...+ ++.++..|...|+++..+| +-..+.+|+.||.|..=|+..
T Consensus 225 Gt~~ls~sSDgtIrlWdLgqQr----------Cl~T~~vH~e~VWaL~~~~--sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 225 GTRLLSASSDGTIRLWDLGQQR----------CLATYIVHKEGVWALQSSP--SFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred CCeEeecCCCceEEeeeccccc----------eeeeEEeccCceEEEeeCC--CcceEEecCCCCcEEecccCC
Confidence 9999999999999999998877 6777889999999999998 889999999999999988764
No 68
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.4e-28 Score=197.64 Aligned_cols=251 Identities=21% Similarity=0.246 Sum_probs=196.5
Q ss_pred cCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCC---eEEecCCceeE
Q 048511 28 HTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGP---VLVAGSSSYQV 104 (351)
Q Consensus 28 h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~ 104 (351)
|.+.|.+|... ++.++||++||++++||..... .....++...+.++++...+. .+++++.+..+
T Consensus 104 hdDWVSsv~~~----------~~~IltgsYDg~~riWd~~Gk~--~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl 171 (423)
T KOG0313|consen 104 HDDWVSSVKGA----------SKWILTGSYDGTSRIWDLKGKS--IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTL 171 (423)
T ss_pred chhhhhhhccc----------CceEEEeecCCeeEEEecCCce--EEEEecCCcceeeeEEEecCCccceEEEecCCceE
Confidence 67778777765 6799999999999999987432 233445556677666655444 58899999888
Q ss_pred EEEEe------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc------------
Q 048511 105 SVESL------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG------------ 160 (351)
Q Consensus 105 ~~~~~------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------------ 160 (351)
.++.. -.||...|.++... +++.. +++|+.|.+|+||+......
T Consensus 172 ~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~------~sgtr------~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk 239 (423)
T KOG0313|consen 172 RLWKWNVGENKVKALKVCRGHKRSVDSVSVD------SSGTR------FCSGSWDTMLKIWSVETDEEDELESSSNRRRK 239 (423)
T ss_pred EEEEecCchhhhhHHhHhcccccceeEEEec------CCCCe------EEeecccceeeecccCCCccccccccchhhhh
Confidence 77653 34899999999999 78899 99999999999999432100
Q ss_pred ------ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCC
Q 048511 161 ------IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSS 234 (351)
Q Consensus 161 ------~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~ 234 (351)
+.....++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.++. ...++. ....++++.++|..
T Consensus 240 ~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~-----~~~~~~-~~ksl~~i~~~~~~ 312 (423)
T KOG0313|consen 240 KQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG-----LKSTLT-TNKSLNCISYSPLS 312 (423)
T ss_pred hhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccc-----ceeeee-cCcceeEeeccccc
Confidence 0001111223468999999999988 7789999999999999999984 455554 34578999999999
Q ss_pred CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC--chhhhc
Q 048511 235 DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP--LSFLKT 312 (351)
Q Consensus 235 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~--~~~~~~ 312 (351)
++|++|+.|..|++||.+++.... ....+.+|...|..+.|+| .+...|++|+.|+++++||++ ...+..
T Consensus 313 ~Ll~~gssdr~irl~DPR~~~gs~-------v~~s~~gH~nwVssvkwsp-~~~~~~~S~S~D~t~klWDvRS~k~plyd 384 (423)
T KOG0313|consen 313 KLLASGSSDRHIRLWDPRTGDGSV-------VSQSLIGHKNWVSSVKWSP-TNEFQLVSGSYDNTVKLWDVRSTKAPLYD 384 (423)
T ss_pred ceeeecCCCCceeecCCCCCCCce-------eEEeeecchhhhhheecCC-CCceEEEEEecCCeEEEEEeccCCCccee
Confidence 999999999999999999987432 4556779999999999999 567889999999999999987 336777
Q ss_pred eeecc
Q 048511 313 LNHAT 317 (351)
Q Consensus 313 ~~~~~ 317 (351)
+.+|.
T Consensus 385 I~~h~ 389 (423)
T KOG0313|consen 385 IAGHN 389 (423)
T ss_pred eccCC
Confidence 77663
No 69
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=8.3e-29 Score=189.61 Aligned_cols=219 Identities=19% Similarity=0.258 Sum_probs=180.1
Q ss_pred EeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCce
Q 048511 23 CELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSY 102 (351)
Q Consensus 23 ~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 102 (351)
..+++|...|.+|+|+ .+|..|++++.|+++++|++.........
T Consensus 14 r~~~~~~~~v~Sv~wn--------~~g~~lasgs~dktv~v~n~e~~r~~~~~--------------------------- 58 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWN--------CDGTKLASGSFDKTVSVWNLERDRFRKEL--------------------------- 58 (313)
T ss_pred HHhhhhhhcceEEEEc--------ccCceeeecccCCceEEEEecchhhhhhh---------------------------
Confidence 4678899999999999 89999999999999999999876433222
Q ss_pred eEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEE
Q 048511 103 QVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGH 182 (351)
Q Consensus 103 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 182 (351)
...+|.+.|-.++|.| +...+ |++++.|.+|++||++. +++...+. ....-.-+.
T Consensus 59 ------~~~gh~~svdql~w~~-----~~~d~------~atas~dk~ir~wd~r~--~k~~~~i~------~~~eni~i~ 113 (313)
T KOG1407|consen 59 ------VYRGHTDSVDQLCWDP-----KHPDL------FATASGDKTIRIWDIRS--GKCTARIE------TKGENINIT 113 (313)
T ss_pred ------cccCCCcchhhheeCC-----CCCcc------eEEecCCceEEEEEecc--CcEEEEee------ccCcceEEE
Confidence 3578999999999998 55566 99999999999999999 77776654 223345688
Q ss_pred EcCCCCEEEEEeeCCeEEEEEcccCcc------------------------------------cCcccccccccccccEE
Q 048511 183 WSPDGRSILAHGYGGAFHLWRNVGVDI------------------------------------DNWQPQKVPSGHFAAVM 226 (351)
Q Consensus 183 ~~~~~~~l~~~~~dg~i~~~d~~~~~~------------------------------------~~~~~~~~~~~~~~~v~ 226 (351)
|+|+|.++++++.|..|.+.|.++.+. ...+++..+++|.....
T Consensus 114 wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCi 193 (313)
T KOG1407|consen 114 WSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCI 193 (313)
T ss_pred EcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceE
Confidence 999999999999999999998876432 13467788889999999
Q ss_pred EEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 227 DISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 227 ~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
+|.|+|+|++||+|+.|-.+.+||+...- +...+.-+..+|..++|+. +|++||+||+|..|-|=+++
T Consensus 194 cI~f~p~GryfA~GsADAlvSLWD~~ELi----------C~R~isRldwpVRTlSFS~--dg~~lASaSEDh~IDIA~ve 261 (313)
T KOG1407|consen 194 CIEFDPDGRYFATGSADALVSLWDVDELI----------CERCISRLDWPVRTLSFSH--DGRMLASASEDHFIDIAEVE 261 (313)
T ss_pred EEEECCCCceEeeccccceeeccChhHhh----------hheeeccccCceEEEEecc--CcceeeccCccceEEeEecc
Confidence 99999999999999999999999997654 4455556778899999999 99999999999998776654
Q ss_pred -chhhhce
Q 048511 307 -LSFLKTL 313 (351)
Q Consensus 307 -~~~~~~~ 313 (351)
|..+..+
T Consensus 262 tGd~~~eI 269 (313)
T KOG1407|consen 262 TGDRVWEI 269 (313)
T ss_pred cCCeEEEe
Confidence 4444433
No 70
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.8e-28 Score=216.23 Aligned_cols=232 Identities=25% Similarity=0.352 Sum_probs=190.7
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.|-+|+||+..+ . .++.++.||-+-|..+.|+ +.-.+++|+|.|.+|+||+..+++++
T Consensus 68 SGGDDykIkVWnYk~-r--rclftL~GHlDYVRt~~FH--------heyPWIlSASDDQTIrIWNwqsr~~i-------- 128 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKT-R--RCLFTLLGHLDYVRTVFFH--------HEYPWILSASDDQTIRIWNWQSRKCI-------- 128 (1202)
T ss_pred ecCCccEEEEEeccc-c--eehhhhccccceeEEeecc--------CCCceEEEccCCCeEEEEeccCCceE--------
Confidence 589999999999988 5 6889999999999999999 77889999999999999999987554
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCC-
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTT- 159 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~- 159 (351)
..+.||...|.|.+|+ |...+ ++++|-|.+||+||+..-.
T Consensus 129 ---------------------------avltGHnHYVMcAqFh------ptEDl------IVSaSLDQTVRVWDisGLRk 169 (1202)
T KOG0292|consen 129 ---------------------------AVLTGHNHYVMCAQFH------PTEDL------IVSASLDQTVRVWDISGLRK 169 (1202)
T ss_pred ---------------------------EEEecCceEEEeeccC------Cccce------EEEecccceEEEEeecchhc
Confidence 5678999999999999 56667 9999999999999986410
Q ss_pred -----c--------c-----eE---EEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccc
Q 048511 160 -----G--------I-----WM---NVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP 218 (351)
Q Consensus 160 -----~--------~-----~~---~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 218 (351)
+ . .. ..+...-+.+|...|.-++|+|.-..+++|+.|..|++|.+...+. -.+-+.
T Consensus 170 k~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa---WEvDtc 246 (1202)
T KOG0292|consen 170 KNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA---WEVDTC 246 (1202)
T ss_pred cCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc---eeehhh
Confidence 0 0 00 0111122468999999999999999999999999999999876542 346678
Q ss_pred ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCC
Q 048511 219 SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEK 298 (351)
Q Consensus 219 ~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg 298 (351)
.+|.+.|.++-|+|...++++.++|++|+|||+..+. .+..++......++++.+| ..+++++|-+.|
T Consensus 247 rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt----------~v~tfrrendRFW~laahP--~lNLfAAgHDsG 314 (1202)
T KOG0292|consen 247 RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT----------SVQTFRRENDRFWILAAHP--ELNLFAAGHDSG 314 (1202)
T ss_pred hcccCCcceEEecCccceeEecCCCccEEEEeccccc----------ceeeeeccCCeEEEEEecC--CcceeeeecCCc
Confidence 8999999999999999999999999999999998887 4555544556789999999 778777775554
Q ss_pred eEEEEecC
Q 048511 299 VARVFEAP 306 (351)
Q Consensus 299 ~v~vw~~~ 306 (351)
+.||.++
T Consensus 315 -m~VFkle 321 (1202)
T KOG0292|consen 315 -MIVFKLE 321 (1202)
T ss_pred -eEEEEEc
Confidence 4566654
No 71
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=9e-28 Score=184.86 Aligned_cols=198 Identities=23% Similarity=0.315 Sum_probs=175.0
Q ss_pred cccceeeeEeeec-CCeEEecCCceeEEEEEec------------cccccceEEEEecCCCCCCCCCcccCCCceeEEee
Q 048511 79 YRKEVISLASYIE-GPVLVAGSSSYQVSVESLL------------IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS 145 (351)
Q Consensus 79 ~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~------------~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~ 145 (351)
+...+..++++|. |..|++++.+..++++..- .+|+..|.+++|+ |.|++ |++||
T Consensus 13 h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAws------p~g~~------La~aS 80 (312)
T KOG0645|consen 13 HKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWS------PHGRY------LASAS 80 (312)
T ss_pred CCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeec------CCCcE------EEEee
Confidence 3446778899998 8899999999888776643 3588999999999 78899 99999
Q ss_pred cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccE
Q 048511 146 MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAV 225 (351)
Q Consensus 146 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v 225 (351)
.|.++.||.-...+-+++.++. +|...|.|++|+++|++||+++.|+.|.||.+.... .+.+...++.|...|
T Consensus 81 FD~t~~Iw~k~~~efecv~~lE-----GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd--Efec~aVL~~HtqDV 153 (312)
T KOG0645|consen 81 FDATVVIWKKEDGEFECVATLE-----GHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD--EFECIAVLQEHTQDV 153 (312)
T ss_pred ccceEEEeecCCCceeEEeeee-----ccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC--cEEEEeeeccccccc
Confidence 9999999998875455555554 999999999999999999999999999999997443 368889999999999
Q ss_pred EEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511 226 MDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE 304 (351)
Q Consensus 226 ~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~ 304 (351)
..+.|+|...+|++++.|.+|++|+-.... .|..+..+.+|...|++++|++ .|..|+++++|++|+||.
T Consensus 154 K~V~WHPt~dlL~S~SYDnTIk~~~~~~dd-------dW~c~~tl~g~~~TVW~~~F~~--~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 154 KHVIWHPTEDLLFSCSYDNTIKVYRDEDDD-------DWECVQTLDGHENTVWSLAFDN--IGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred cEEEEcCCcceeEEeccCCeEEEEeecCCC-------CeeEEEEecCccceEEEEEecC--CCceEEEecCCcceEeee
Confidence 999999999999999999999999987543 7889999999999999999999 899999999999999998
No 72
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2.1e-29 Score=198.80 Aligned_cols=237 Identities=18% Similarity=0.198 Sum_probs=191.1
Q ss_pred ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEE
Q 048511 27 GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSV 106 (351)
Q Consensus 27 ~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 106 (351)
+..+.+-|..|+ |++.+|++|+.||-|.+||..+++......-. .
T Consensus 211 g~KSh~EcA~FS--------PDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQ---------------------------A 255 (508)
T KOG0275|consen 211 GQKSHVECARFS--------PDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQ---------------------------A 255 (508)
T ss_pred ccccchhheeeC--------CCCceEeeccccceeeeehhccchhhhhhhhh---------------------------h
Confidence 345567899999 89999999999999999999988754433211 1
Q ss_pred EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCC
Q 048511 107 ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD 186 (351)
Q Consensus 107 ~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 186 (351)
...+--+.++|.|+.|+ .|..+ +|+|+.||.|++|.+++ |.+++.+. ..|...|+|+.|+.|
T Consensus 256 qd~fMMmd~aVlci~FS------RDsEM------lAsGsqDGkIKvWri~t--G~ClRrFd----rAHtkGvt~l~FSrD 317 (508)
T KOG0275|consen 256 QDNFMMMDDAVLCISFS------RDSEM------LASGSQDGKIKVWRIET--GQCLRRFD----RAHTKGVTCLSFSRD 317 (508)
T ss_pred hcceeecccceEEEeec------ccHHH------hhccCcCCcEEEEEEec--chHHHHhh----hhhccCeeEEEEccC
Confidence 12344578999999999 89999 99999999999999999 88888775 378889999999999
Q ss_pred CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccccc-------
Q 048511 187 GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM------- 259 (351)
Q Consensus 187 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~------- 259 (351)
+..+++++.|.++++.-+..+ ++++.+.+|.+.|+...|.++|+.+++++.||+|++|+..+.++..+
T Consensus 318 ~SqiLS~sfD~tvRiHGlKSG-----K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d 392 (508)
T KOG0275|consen 318 NSQILSASFDQTVRIHGLKSG-----KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTD 392 (508)
T ss_pred cchhhcccccceEEEeccccc-----hhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCc
Confidence 999999999999999999998 77999999999999999999999999999999999999988776543
Q ss_pred -Cccce--------------------------EEeccc---cccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-ch
Q 048511 260 -GENSW--------------------------HEVARP---QVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LS 308 (351)
Q Consensus 260 -~~~~~--------------------------~~~~~~---~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~ 308 (351)
..... +.+..+ +-.++...+.+.+| .|.++.+.++|+.++.|... |+
T Consensus 393 ~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSp--kGewiYcigED~vlYCF~~~sG~ 470 (508)
T KOG0275|consen 393 YPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSP--KGEWIYCIGEDGVLYCFSVLSGK 470 (508)
T ss_pred ccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecC--CCcEEEEEccCcEEEEEEeecCc
Confidence 00000 011111 11233455667888 89999999999999999965 88
Q ss_pred hhhceeeccccccch
Q 048511 309 FLKTLNHATFQESSF 323 (351)
Q Consensus 309 ~~~~~~~~~~~~~~~ 323 (351)
...++.-|.....+.
T Consensus 471 LE~tl~VhEkdvIGl 485 (508)
T KOG0275|consen 471 LERTLPVHEKDVIGL 485 (508)
T ss_pred eeeeeeccccccccc
Confidence 888887776554443
No 73
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.3e-27 Score=185.14 Aligned_cols=255 Identities=17% Similarity=0.179 Sum_probs=191.7
Q ss_pred EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511 20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS 99 (351)
Q Consensus 20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (351)
++...+..-.+.|++|.|+ .+|.+|++++.|-++++||..++.....+.... ..+-.+.|......+..+.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs--------~~G~~litss~dDsl~LYd~~~g~~~~ti~skk-yG~~~~~Fth~~~~~i~sS 75 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFS--------DDGLLLITSSEDDSLRLYDSLSGKQVKTINSKK-YGVDLACFTHHSNTVIHSS 75 (311)
T ss_pred ccccccccCCCceeEEEec--------CCCCEEEEecCCCeEEEEEcCCCceeeEeeccc-ccccEEEEecCCceEEEcc
Confidence 3445566567899999999 899999999999999999999998877665442 2344445555444444444
Q ss_pred C--ceeEE--------EEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEec
Q 048511 100 S--SYQVS--------VESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVG 169 (351)
Q Consensus 100 ~--~~~~~--------~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 169 (351)
. +..++ .++.+.||.+.|++|..+| -+.. +++++.|++|++||++. ..+...+..
T Consensus 76 tk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP------~~d~------FlS~S~D~tvrLWDlR~--~~cqg~l~~- 140 (311)
T KOG1446|consen 76 TKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP------KDDT------FLSSSLDKTVRLWDLRV--KKCQGLLNL- 140 (311)
T ss_pred CCCCCceEEEEeecCceEEEcCCCCceEEEEEecC------CCCe------EEecccCCeEEeeEecC--CCCceEEec-
Confidence 3 44443 3566899999999999995 5577 99999999999999997 444444431
Q ss_pred cccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEE
Q 048511 170 ELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249 (351)
Q Consensus 170 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vw 249 (351)
..-..++|+|+|-++|++.....|++||++.-....+.....-.+-....+.|.|||||++|+.++..+.+++.
T Consensus 141 ------~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~l 214 (311)
T KOG1446|consen 141 ------SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLL 214 (311)
T ss_pred ------CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEE
Confidence 12245799999999999998889999999876543333332222446788999999999999999999999999
Q ss_pred cCCCccccccCccceEEecccccccc---ceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeec
Q 048511 250 APWKNVASLMGENSWHEVARPQVHGH---DINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHA 316 (351)
Q Consensus 250 d~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~ 316 (351)
|.-.+. ....+..+.. ---..+|+| |++++++|++||+|.+|+++ +..+..+++.
T Consensus 215 DAf~G~----------~~~tfs~~~~~~~~~~~a~ftP--ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 215 DAFDGT----------VKSTFSGYPNAGNLPLSATFTP--DSKFVLSGSDDGTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred EccCCc----------EeeeEeeccCCCCcceeEEECC--CCcEEEEecCCCcEEEEEcCCCcEeeEecCC
Confidence 998887 2333333322 125677889 99999999999999999987 7777777764
No 74
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=7.4e-28 Score=196.56 Aligned_cols=259 Identities=19% Similarity=0.242 Sum_probs=214.8
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
||+.|..+.++|... + +.+.+|+||...|+.+.|+ ++...+++++.|..|+||...... .......+.
T Consensus 236 TGG~d~~av~~d~~s-~--q~l~~~~Gh~kki~~v~~~--------~~~~~v~~aSad~~i~vws~~~~s-~~~~~~~h~ 303 (506)
T KOG0289|consen 236 TGGEDKTAVLFDKPS-N--QILATLKGHTKKITSVKFH--------KDLDTVITASADEIIRVWSVPLSS-EPTSSRPHE 303 (506)
T ss_pred ecCCCCceEEEecch-h--hhhhhccCcceEEEEEEec--------cchhheeecCCcceEEeecccccc-Ccccccccc
Confidence 689999999999988 6 5678999999999999999 889999999999999999987665 334455667
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEe-----cccc-----ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeE
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESL-----LIGH-----EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTM 150 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~h-----~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i 150 (351)
.++..+..+|.|.+++.++.++.+-+... +..+ .-.+++.+|+ |||.+ |.+|..|+.|
T Consensus 304 ~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fH------pDgLi------fgtgt~d~~v 371 (506)
T KOG0289|consen 304 EPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFH------PDGLI------FGTGTPDGVV 371 (506)
T ss_pred ccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEc------CCceE------EeccCCCceE
Confidence 78999999999999999998887644322 1112 2348999999 89999 9999999999
Q ss_pred EEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccc-cccEEEEE
Q 048511 151 MIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH-FAAVMDIS 229 (351)
Q Consensus 151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~-~~~v~~v~ 229 (351)
+|||+.+ +..+..|. +|.++|..+.|+.+|-+|++++.|+.|++||++..+ ..+++.-. ...+.+++
T Consensus 372 kiwdlks--~~~~a~Fp-----ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~-----n~kt~~l~~~~~v~s~~ 439 (506)
T KOG0289|consen 372 KIWDLKS--QTNVAKFP-----GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK-----NFKTIQLDEKKEVNSLS 439 (506)
T ss_pred EEEEcCC--ccccccCC-----CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc-----ccceeeccccccceeEE
Confidence 9999998 55555554 899999999999999999999999999999999863 34443322 23699999
Q ss_pred eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511 230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA 305 (351)
Q Consensus 230 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~ 305 (351)
|.+.|.+|+.++.|=.|++++-.+ +.|.++..+..|.+..+++.|.. ..++++++|.|..++++.+
T Consensus 440 fD~SGt~L~~~g~~l~Vy~~~k~~--------k~W~~~~~~~~~sg~st~v~Fg~--~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 440 FDQSGTYLGIAGSDLQVYICKKKT--------KSWTEIKELADHSGLSTGVRFGE--HAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EcCCCCeEEeecceeEEEEEeccc--------ccceeeehhhhcccccceeeecc--cceEEeeccchhheEEeec
Confidence 999999999998776666665433 46899999888988899999988 8899999999999998864
No 75
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=8.3e-28 Score=207.63 Aligned_cols=278 Identities=17% Similarity=0.186 Sum_probs=210.7
Q ss_pred CCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeC-Cccc--CCCCCccEEEEeeCCCcEEEEecCCCcccce----e
Q 048511 3 GLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSL-PVCT--SGEAISILLVSSSQDKVIRIWKLALRGSSAN----T 75 (351)
Q Consensus 3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~--~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~----~ 75 (351)
..|.+|+|||++...+.-....+--|...|+.+.--| ..+. .+---...+.||+.|++||+|++.....-.. +
T Consensus 343 YndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNi 422 (1080)
T KOG1408|consen 343 YNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNI 422 (1080)
T ss_pred EcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeeccc
Confidence 3688999999998665556666777999999998763 1000 0001124699999999999999975221111 0
Q ss_pred ec--------------------------------ccccceeeeEeeecCCeEEecCCceeEEEEEe--------cccccc
Q 048511 76 QS--------------------------------TYRKEVISLASYIEGPVLVAGSSSYQVSVESL--------LIGHED 115 (351)
Q Consensus 76 ~~--------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~h~~ 115 (351)
.. .....+.+++.+|+|+.|++|+..+.+++... +..|..
T Consensus 423 ls~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHes 502 (1080)
T KOG1408|consen 423 LSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHES 502 (1080)
T ss_pred chhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccc
Confidence 00 00445789999999999999999999877653 568999
Q ss_pred ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcce----------EEEEEe-----------------
Q 048511 116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIW----------MNVVTV----------------- 168 (351)
Q Consensus 116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~----------~~~~~~----------------- 168 (351)
.|.|+.|+-.. -..++ ||+++.|+.|+|||+... ... +..+++
T Consensus 503 EilcLeyS~p~---~~~kL------LASasrdRlIHV~Dv~rn-y~l~qtld~HSssITsvKFa~~gln~~MiscGADks 572 (1080)
T KOG1408|consen 503 EILCLEYSFPV---LTNKL------LASASRDRLIHVYDVKRN-YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKS 572 (1080)
T ss_pred eeEEEeecCch---hhhHh------hhhccCCceEEEEecccc-cchhhhhcccccceeEEEEeecCCceEEEeccCchh
Confidence 99999999422 12356 999999999999998741 000 000000
Q ss_pred -----------------ccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc---cccccEEEE
Q 048511 169 -----------------GELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS---GHFAAVMDI 228 (351)
Q Consensus 169 -----------------~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~---~~~~~v~~v 228 (351)
.........++.++..|..+++++++.|..|+|||+..++ ..+.++ +|++..-.+
T Consensus 573 imFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK-----q~k~FKgs~~~eG~lIKv 647 (1080)
T KOG1408|consen 573 IMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK-----QVKSFKGSRDHEGDLIKV 647 (1080)
T ss_pred hheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccc-----eeeeecccccCCCceEEE
Confidence 0001113457888999999999999999999999999884 345554 467778889
Q ss_pred EeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511 229 SWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 229 ~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 307 (351)
...|.|.||++.+.|+++.++|+-+++ .+....+|...|+.+.|.+ |-+.|++.+.||+|.||.++.
T Consensus 648 ~lDPSgiY~atScsdktl~~~Df~sgE----------cvA~m~GHsE~VTG~kF~n--DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 648 ILDPSGIYLATSCSDKTLCFVDFVSGE----------CVAQMTGHSEAVTGVKFLN--DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EECCCccEEEEeecCCceEEEEeccch----------hhhhhcCcchheeeeeecc--cchhheeecCCceEEEEECch
Confidence 999999999999999999999999988 7888889999999999999 999999999999999999883
No 76
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=5.7e-28 Score=193.17 Aligned_cols=252 Identities=15% Similarity=0.188 Sum_probs=202.9
Q ss_pred EEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCC
Q 048511 21 RACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSS 100 (351)
Q Consensus 21 ~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 100 (351)
.+.+|..|++.|.+++.+ |+.++++||+.|..-.+|++.++... .....+...+.++.|+.+|.+|++|+.
T Consensus 56 S~~tF~~H~~svFavsl~--------P~~~l~aTGGgDD~AflW~~~~ge~~-~eltgHKDSVt~~~FshdgtlLATGdm 126 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLH--------PNNNLVATGGGDDLAFLWDISTGEFA-GELTGHKDSVTCCSFSHDGTLLATGDM 126 (399)
T ss_pred ceeehhhcCCceEEEEeC--------CCCceEEecCCCceEEEEEccCCcce-eEecCCCCceEEEEEccCceEEEecCC
Confidence 457899999999999999 78889999999999999999998843 444566789999999999999999999
Q ss_pred ceeEEEEEeccccc--------cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccc
Q 048511 101 SYQVSVESLLIGHE--------DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELS 172 (351)
Q Consensus 101 ~~~~~~~~~~~~h~--------~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 172 (351)
++.+.++..-.++. ..+.-+.|+ |.+.+ |+.|+.||.+-+|.+.+ +...+.+.
T Consensus 127 sG~v~v~~~stg~~~~~~~~e~~dieWl~WH------p~a~i------llAG~~DGsvWmw~ip~--~~~~kv~~----- 187 (399)
T KOG0296|consen 127 SGKVLVFKVSTGGEQWKLDQEVEDIEWLKWH------PRAHI------LLAGSTDGSVWMWQIPS--QALCKVMS----- 187 (399)
T ss_pred CccEEEEEcccCceEEEeecccCceEEEEec------ccccE------EEeecCCCcEEEEECCC--cceeeEec-----
Confidence 99998887655543 345567888 67778 99999999999999998 55555555
Q ss_pred ccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc---------------------------------
Q 048511 173 HSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS--------------------------------- 219 (351)
Q Consensus 173 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--------------------------------- 219 (351)
+|..++++-.|.|+|+.++++..||+|++|++.++.. +..+.
T Consensus 188 Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p-----~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~ 262 (399)
T KOG0296|consen 188 GHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQP-----LHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNN 262 (399)
T ss_pred CCCCCcccccccCCCceEEEEecCceEEEEecCCCce-----eEEecccccCcCCccccccccceeEeccCCccEEEEcc
Confidence 8999999999999999999999999999999988732 11111
Q ss_pred ------------------cccccEEEEEeec---CCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccccccccee
Q 048511 220 ------------------GHFAAVMDISWSR---SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDIN 278 (351)
Q Consensus 220 ------------------~~~~~v~~v~~sp---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 278 (351)
.+...+.+|.+.| .-.+.|+|+.||+|.|||+.... ++..-.|...|+
T Consensus 263 ~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~-----------~R~~c~he~~V~ 331 (399)
T KOG0296|consen 263 GSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST-----------LRHICEHEDGVT 331 (399)
T ss_pred ccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch-----------hheeccCCCceE
Confidence 1122223333333 34677899999999999996654 233336778899
Q ss_pred EEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecccc
Q 048511 279 CVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATFQ 319 (351)
Q Consensus 279 ~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~ 319 (351)
.+.|.+ ..+|++++.||.|+.||.+ |+++.++.+|...
T Consensus 332 ~l~w~~---t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~ 370 (399)
T KOG0296|consen 332 KLKWLN---TDYLLTACANGKVRQWDARTGQLKFTYTGHQMG 370 (399)
T ss_pred EEEEcC---cchheeeccCceEEeeeccccceEEEEecCchh
Confidence 999987 6789999999999999987 9888888887643
No 77
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.5e-28 Score=192.72 Aligned_cols=265 Identities=17% Similarity=0.243 Sum_probs=209.0
Q ss_pred CCCCCceEEEEEccC---------------CCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEe
Q 048511 1 MGGLDNKIHLYRGQR---------------TGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWK 65 (351)
Q Consensus 1 tg~~dg~i~vw~~~~---------------~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd 65 (351)
||+.|.+|+|.|++. +.....+++|..|.++|+++.|+ |....|++++.|++|+++|
T Consensus 129 TGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH--------Pre~ILiS~srD~tvKlFD 200 (430)
T KOG0640|consen 129 TGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH--------PRETILISGSRDNTVKLFD 200 (430)
T ss_pred ccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec--------chhheEEeccCCCeEEEEe
Confidence 699999999999882 12224578899999999999999 8899999999999999999
Q ss_pred cCCCcccceeec-ccccceeeeEeeecCCeEEecCCceeEEEEEe-----------ccccccceEEEEecCCCCCCCCCc
Q 048511 66 LALRGSSANTQS-TYRKEVISLASYIEGPVLVAGSSSYQVSVESL-----------LIGHEDWVYSVQWEPPSTAPSDGV 133 (351)
Q Consensus 66 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----------~~~h~~~v~~l~~~p~~~~~~~~~ 133 (351)
+........... ....++.++.|+|.|.++++|.....+++... -.+|++.|+++.++ +.++
T Consensus 201 fsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys------~t~~ 274 (430)
T KOG0640|consen 201 FSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYS------STGS 274 (430)
T ss_pred cccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEec------CCcc
Confidence 986643322211 12457899999999999999987766654432 34699999999999 7899
Q ss_pred ccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcc
Q 048511 134 SCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQ 213 (351)
Q Consensus 134 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 213 (351)
+ .++++.||.|++||--+ +.++.++.. ......|.+..|..+++++++++.|..+++|.+.++ .
T Consensus 275 l------YvTaSkDG~IklwDGVS--~rCv~t~~~---AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~-----R 338 (430)
T KOG0640|consen 275 L------YVTASKDGAIKLWDGVS--NRCVRTIGN---AHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG-----R 338 (430)
T ss_pred E------EEEeccCCcEEeecccc--HHHHHHHHh---hcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC-----c
Confidence 9 99999999999999888 777777652 233457999999999999999999999999999988 4
Q ss_pred ccccccccc-----ccEEEEEeecCCCEEEEEeC-CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCC
Q 048511 214 PQKVPSGHF-----AAVMDISWSRSSDYLLSVSH-DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKG 287 (351)
Q Consensus 214 ~~~~~~~~~-----~~v~~v~~sp~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 287 (351)
++..+.+-. .--+...|+....+++.-.+ .+.+.-||.++... ......+|.+.+.++.-+| .
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr---------~~l~slgHn~a~R~i~HSP--~ 407 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR---------VALLSLGHNGAVRWIVHSP--V 407 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhh---------hhhcccCCCCCceEEEeCC--C
Confidence 455554421 11234567777778766544 47899999998762 1122348999999999999 8
Q ss_pred CcEEEEecCCCeEEEEecC
Q 048511 288 NHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 288 ~~~l~s~~~dg~v~vw~~~ 306 (351)
+.-++++++|..+|+|-..
T Consensus 408 ~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 408 EPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CCceeeecccceeeeeeec
Confidence 8999999999999999643
No 78
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1e-27 Score=184.21 Aligned_cols=220 Identities=18% Similarity=0.256 Sum_probs=187.8
Q ss_pred eeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCcee
Q 048511 24 ELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQ 103 (351)
Q Consensus 24 ~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 103 (351)
.++||..+++.|.|+ .+|++|+||+.|.+..+|-..+++.+
T Consensus 5 ~l~GHERplTqiKyN--------~eGDLlFscaKD~~~~vw~s~nGerl------------------------------- 45 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYN--------REGDLLFSCAKDSTPTVWYSLNGERL------------------------------- 45 (327)
T ss_pred ccccCccccceEEec--------CCCcEEEEecCCCCceEEEecCCcee-------------------------------
Confidence 578999999999999 89999999999999999988777554
Q ss_pred EEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEE
Q 048511 104 VSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHW 183 (351)
Q Consensus 104 ~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 183 (351)
-++.||++.|+|+... .+... +++|+.|.++++||+++ |+.+..++ ...+|..+.|
T Consensus 46 ----Gty~GHtGavW~~Did------~~s~~------liTGSAD~t~kLWDv~t--Gk~la~~k------~~~~Vk~~~F 101 (327)
T KOG0643|consen 46 ----GTYDGHTGAVWCCDID------WDSKH------LITGSADQTAKLWDVET--GKQLATWK------TNSPVKRVDF 101 (327)
T ss_pred ----eeecCCCceEEEEEec------CCcce------eeeccccceeEEEEcCC--CcEEEEee------cCCeeEEEee
Confidence 4568999999999999 78888 99999999999999999 88887775 4567999999
Q ss_pred cCCCCEEEEEee-----CCeEEEEEcccCc--ccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccc
Q 048511 184 SPDGRSILAHGY-----GGAFHLWRNVGVD--IDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVA 256 (351)
Q Consensus 184 ~~~~~~l~~~~~-----dg~i~~~d~~~~~--~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~ 256 (351)
+++|++++.+.. .+.|.++|++... .....+...+..+.+.++.+-|.|-+++|++|.+||.|.+||.+++.
T Consensus 102 ~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~- 180 (327)
T KOG0643|consen 102 SFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK- 180 (327)
T ss_pred ccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc-
Confidence 999998877654 4679999997432 11124566777788999999999999999999999999999999986
Q ss_pred cccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511 257 SLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT 317 (351)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~ 317 (351)
..+...+.|...|+.+.+++ +..++++++.|.+.++||.. -.+++++....
T Consensus 181 --------~~v~s~~~h~~~Ind~q~s~--d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~ 232 (327)
T KOG0643|consen 181 --------ELVDSDEEHSSKINDLQFSR--DRTYFITGSKDTTAKLVDVRTLEVLKTYTTER 232 (327)
T ss_pred --------eeeechhhhccccccccccC--CcceEEecccCccceeeeccceeeEEEeeecc
Confidence 25666678999999999999 99999999999999999976 66666665544
No 79
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.1e-28 Score=193.41 Aligned_cols=239 Identities=17% Similarity=0.234 Sum_probs=184.0
Q ss_pred EEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCc
Q 048511 22 ACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSS 101 (351)
Q Consensus 22 ~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 101 (351)
...+..|.+++.+.+|+ ++|.++|||+.|..|+|.|++..-...... .+..++..
T Consensus 105 t~ylt~HK~~cR~aafs--------~DG~lvATGsaD~SIKildvermlaks~~~-----------------em~~~~~q 159 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFS--------PDGSLVATGSADASIKILDVERMLAKSKPK-----------------EMISGDTQ 159 (430)
T ss_pred eEEEeecccceeeeeeC--------CCCcEEEccCCcceEEEeehhhhhhhcchh-----------------hhccCCcc
Confidence 35677899999999999 899999999999999999997321110000 01111222
Q ss_pred eeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEE
Q 048511 102 YQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGG 181 (351)
Q Consensus 102 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i 181 (351)
..-.+++++..|.++|+++.|+ |...+ |++|+.|++|++||+... ...+.++. -....+|.++
T Consensus 160 a~hPvIRTlYDH~devn~l~FH------Pre~I------LiS~srD~tvKlFDfsK~--saKrA~K~---~qd~~~vrsi 222 (430)
T KOG0640|consen 160 ARHPVIRTLYDHVDEVNDLDFH------PRETI------LISGSRDNTVKLFDFSKT--SAKRAFKV---FQDTEPVRSI 222 (430)
T ss_pred cCCceEeehhhccCcccceeec------chhhe------EEeccCCCeEEEEecccH--HHHHHHHH---hhccceeeeE
Confidence 2235678899999999999999 56678 999999999999999872 22222221 1345579999
Q ss_pred EEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCc
Q 048511 182 HWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGE 261 (351)
Q Consensus 182 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 261 (351)
.|+|.|.+|++|..-..+++||+++-+. +.....-..|.+.|++|.+++.+++.++++.||.|+|||--..+
T Consensus 223 SfHPsGefllvgTdHp~~rlYdv~T~Qc--fvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r------ 294 (430)
T KOG0640|consen 223 SFHPSGEFLLVGTDHPTLRLYDVNTYQC--FVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR------ 294 (430)
T ss_pred eecCCCceEEEecCCCceeEEeccceeE--eeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHH------
Confidence 9999999999999999999999998632 11122334689999999999999999999999999999987776
Q ss_pred cceEEeccc-cccc-cceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeec
Q 048511 262 NSWHEVARP-QVHG-HDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHA 316 (351)
Q Consensus 262 ~~~~~~~~~-~~~~-~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~ 316 (351)
++..+ .+|+ ..|.+..|.. ++++|++.+.|..|++|.+. +..++++.+.
T Consensus 295 ----Cv~t~~~AH~gsevcSa~Ftk--n~kyiLsSG~DS~vkLWEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 295 ----CVRTIGNAHGGSEVCSAVFTK--NGKYILSSGKDSTVKLWEISTGRMLKEYTGA 346 (430)
T ss_pred ----HHHHHHhhcCCceeeeEEEcc--CCeEEeecCCcceeeeeeecCCceEEEEecC
Confidence 33322 2455 4588899998 99999999999999999987 7777776655
No 80
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.6e-27 Score=184.66 Aligned_cols=259 Identities=15% Similarity=0.196 Sum_probs=202.1
Q ss_pred CCCCCceEEEEEccCCC---------ceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc
Q 048511 1 MGGLDNKIHLYRGQRTG---------KFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS 71 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~---------~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~ 71 (351)
+|++...|.-+++.... .+.++..+.+|.++|++++.+ +.++||||.|-+|+|||+.+...
T Consensus 6 vGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs----------~~~~aSGssDetI~IYDm~k~~q 75 (362)
T KOG0294|consen 6 VGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS----------GPYVASGSSDETIHIYDMRKRKQ 75 (362)
T ss_pred EeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec----------ceeEeccCCCCcEEEEeccchhh
Confidence 36666677777655311 234577889999999999998 88999999999999999998877
Q ss_pred cceeecccccceeeeEeeecCC--eEEecCCceeEEEE--------EeccccccceEEEEecCCCCCCCCCcccCCCcee
Q 048511 72 SANTQSTYRKEVISLASYIEGP--VLVAGSSSYQVSVE--------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSI 141 (351)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~--------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l 141 (351)
+..+... ...+.++.|.++-. .|+++..++.+.+| ..+++|.+.|+.++.+ |.+++ .
T Consensus 76 lg~ll~H-agsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiH------PS~KL------A 142 (362)
T KOG0294|consen 76 LGILLSH-AGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIH------PSGKL------A 142 (362)
T ss_pred hcceecc-ccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEec------CCCce------E
Confidence 6655543 67788888888765 78888888877554 4688999999999999 68888 9
Q ss_pred EEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccc
Q 048511 142 LSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH 221 (351)
Q Consensus 142 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~ 221 (351)
++.+.|+.+++||+-. +.......+. + ....+.|+|.|.+++.+..++ |-+|.+.+.. ....+. .
T Consensus 143 LsVg~D~~lr~WNLV~--Gr~a~v~~L~----~--~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~-----v~~~i~-~ 207 (362)
T KOG0294|consen 143 LSVGGDQVLRTWNLVR--GRVAFVLNLK----N--KATLVSWSPQGDHFVVSGRNK-IDIYQLDNAS-----VFREIE-N 207 (362)
T ss_pred EEEcCCceeeeehhhc--CccceeeccC----C--cceeeEEcCCCCEEEEEeccE-EEEEecccHh-----Hhhhhh-c
Confidence 9999999999999998 5444444432 1 223499999999998887765 8899988753 233332 2
Q ss_pred cccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEE
Q 048511 222 FAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVAR 301 (351)
Q Consensus 222 ~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~ 301 (351)
...+.++.|- ++..|++|..|+.|.+||..... +...+.+|...|..+.+-..+++.+|+++|.||.|+
T Consensus 208 ~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~----------~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~ 276 (362)
T KOG0294|consen 208 PKRILCATFL-DGSELLVGGDNEWISLKDTDSDT----------PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIK 276 (362)
T ss_pred cccceeeeec-CCceEEEecCCceEEEeccCCCc----------cceeeecchhheeeeEEEecCCceEEEEeccCceEE
Confidence 3456666665 45688999999999999998765 677788999999999966545789999999999999
Q ss_pred EEecCch
Q 048511 302 VFEAPLS 308 (351)
Q Consensus 302 vw~~~~~ 308 (351)
|||++.+
T Consensus 277 vWd~~~~ 283 (362)
T KOG0294|consen 277 VWDIDME 283 (362)
T ss_pred EEEcccc
Confidence 9998743
No 81
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.9e-27 Score=183.96 Aligned_cols=258 Identities=16% Similarity=0.272 Sum_probs=192.8
Q ss_pred CCCCCceEEEEEc-cCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccc
Q 048511 1 MGGLDNKIHLYRG-QRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTY 79 (351)
Q Consensus 1 tg~~dg~i~vw~~-~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~ 79 (351)
||+.|++|+|||. ...+.+.+....+.|.+.|..|.|.+| .-|+.+|+++.|++++||.-........-
T Consensus 30 tCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhP------EfGqvvA~cS~Drtv~iWEE~~~~~~~~~---- 99 (361)
T KOG2445|consen 30 TCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHP------EFGQVVATCSYDRTVSIWEEQEKSEEAHG---- 99 (361)
T ss_pred eccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCc------cccceEEEEecCCceeeeeeccccccccc----
Confidence 6899999999994 445788999999999999999999954 45889999999999999975422111000
Q ss_pred ccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCC
Q 048511 80 RKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTT 159 (351)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 159 (351)
........+......|++++|.|.. -|-. +|+++.||.+|||+...
T Consensus 100 ----------------------~~Wv~~ttl~DsrssV~DV~FaP~h----lGLk------lA~~~aDG~lRIYEA~d-- 145 (361)
T KOG2445|consen 100 ----------------------RRWVRRTTLVDSRSSVTDVKFAPKH----LGLK------LAAASADGILRIYEAPD-- 145 (361)
T ss_pred ----------------------ceeEEEEEeecCCcceeEEEecchh----cceE------EEEeccCcEEEEEecCC--
Confidence 0112334556677889999999853 4556 99999999999999876
Q ss_pred cceEEEEEe--------ccccccccceEEEEEcCC---CCEEEEEeeC-----CeEEEEEcccCcccCcccccccccccc
Q 048511 160 GIWMNVVTV--------GELSHSALGFYGGHWSPD---GRSILAHGYG-----GAFHLWRNVGVDIDNWQPQKVPSGHFA 223 (351)
Q Consensus 160 ~~~~~~~~~--------~~~~~~~~~i~~i~~~~~---~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~ 223 (351)
...+....+ .....+..+..|+.|+|. ..+|++|+.+ +.+.||....+. +.+..+.++.+|..
T Consensus 146 p~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~-rKw~kva~L~d~~d 224 (361)
T KOG2445|consen 146 PMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG-RKWLKVAELPDHTD 224 (361)
T ss_pred ccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc-ceeeeehhcCCCCC
Confidence 222221111 122345667889999974 4577877766 578899876543 22566778889999
Q ss_pred cEEEEEeecC----CCEEEEEeCCCcEEEEcCCCccc----------cccCccceEEeccccccccceeEEEEeeeCCCc
Q 048511 224 AVMDISWSRS----SDYLLSVSHDQTTRVFAPWKNVA----------SLMGENSWHEVARPQVHGHDINCVTIIQGKGNH 289 (351)
Q Consensus 224 ~v~~v~~sp~----~~~l~s~~~dg~i~vwd~~~~~~----------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 289 (351)
+|++++|.|+ -.+||+++.|| |+||.+..... ..+..-..+.+..+..|...|+.+.|+- .|.
T Consensus 225 pI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm--tGt 301 (361)
T KOG2445|consen 225 PIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM--TGT 301 (361)
T ss_pred cceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee--eee
Confidence 9999999995 35799999999 99999974221 0112234556777889999999999998 899
Q ss_pred EEEEecCCCeEEEEecC
Q 048511 290 RFVSGADEKVARVFEAP 306 (351)
Q Consensus 290 ~l~s~~~dg~v~vw~~~ 306 (351)
.|++.|+||+||+|...
T Consensus 302 iLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 302 ILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEeecCCCceeeehhhh
Confidence 99999999999999976
No 82
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.4e-28 Score=213.11 Aligned_cols=209 Identities=20% Similarity=0.304 Sum_probs=164.1
Q ss_pred EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511 20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS 99 (351)
Q Consensus 20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (351)
+++..|.||.+.|..|.|+ . ..+|+|+|.|.+||+|++....++..+
T Consensus 360 kP~~ef~GHt~DILDlSWS--------K-n~fLLSSSMDKTVRLWh~~~~~CL~~F------------------------ 406 (712)
T KOG0283|consen 360 KPFCEFKGHTADILDLSWS--------K-NNFLLSSSMDKTVRLWHPGRKECLKVF------------------------ 406 (712)
T ss_pred cchhhhhccchhheecccc--------c-CCeeEeccccccEEeecCCCcceeeEE------------------------
Confidence 3456789999999999999 4 569999999999999999987776433
Q ss_pred CceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceE
Q 048511 100 SSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFY 179 (351)
Q Consensus 100 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~ 179 (351)
.|.+.|+|++|+| .|.++ |++|+-|+.|+||++.. .+.+.-. .-...|+
T Consensus 407 ------------~HndfVTcVaFnP-----vDDry------FiSGSLD~KvRiWsI~d--~~Vv~W~------Dl~~lIT 455 (712)
T KOG0283|consen 407 ------------SHNDFVTCVAFNP-----VDDRY------FISGSLDGKVRLWSISD--KKVVDWN------DLRDLIT 455 (712)
T ss_pred ------------ecCCeeEEEEecc-----cCCCc------EeecccccceEEeecCc--CeeEeeh------hhhhhhe
Confidence 3999999999999 88899 99999999999999987 4433322 3346799
Q ss_pred EEEEcCCCCEEEEEeeCCeEEEEEcccCcccCc-----ccccccccccccEEEEEeecCCC-EEEEEeCCCcEEEEcCCC
Q 048511 180 GGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNW-----QPQKVPSGHFAAVMDISWSRSSD-YLLSVSHDQTTRVFAPWK 253 (351)
Q Consensus 180 ~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-----~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~~dg~i~vwd~~~ 253 (351)
+++|.|+|++.++|+.+|.+++|+....+...- +..+.. .|. .|+++.|.|... .+++.+.|..|||||.+.
T Consensus 456 Avcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~-~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~ 533 (712)
T KOG0283|consen 456 AVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKK-QGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD 533 (712)
T ss_pred eEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccc-cCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc
Confidence 999999999999999999999999877532100 000111 133 799999998543 466677899999999977
Q ss_pred ccccccCccceEEecccccccc--ceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 254 NVASLMGENSWHEVARPQVHGH--DINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
.. .+..++++.. .-....|+. ||.+|+++++|..|++|+.+
T Consensus 534 ~~----------lv~KfKG~~n~~SQ~~Asfs~--Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 534 KD----------LVHKFKGFRNTSSQISASFSS--DGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred hh----------hhhhhcccccCCcceeeeEcc--CCCEEEEeecCceEEEEeCC
Confidence 76 4555554432 234667888 99999999999999999974
No 83
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=7.9e-28 Score=213.32 Aligned_cols=223 Identities=20% Similarity=0.356 Sum_probs=189.8
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.|.+++|||..+ | .+...+.+|.+.|.++... ..++++|+.|.+|++|++.++..+
T Consensus 266 sgS~D~t~rvWd~~s-g--~C~~~l~gh~stv~~~~~~----------~~~~~sgs~D~tVkVW~v~n~~~l-------- 324 (537)
T KOG0274|consen 266 SGSTDKTERVWDCST-G--ECTHSLQGHTSSVRCLTID----------PFLLVSGSRDNTVKVWDVTNGACL-------- 324 (537)
T ss_pred EEecCCcEEeEecCC-C--cEEEEecCCCceEEEEEcc----------CceEeeccCCceEEEEeccCcceE--------
Confidence 588999999999888 7 6788999999999999887 568899999999999999976544
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG 160 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 160 (351)
..+.+|.++|.++... +.+ +++|+.|++|++||+.+ +
T Consensus 325 ---------------------------~l~~~h~~~V~~v~~~--------~~~------lvsgs~d~~v~VW~~~~--~ 361 (537)
T KOG0274|consen 325 ---------------------------NLLRGHTGPVNCVQLD--------EPL------LVSGSYDGTVKVWDPRT--G 361 (537)
T ss_pred ---------------------------EEeccccccEEEEEec--------CCE------EEEEecCceEEEEEhhh--c
Confidence 4556799999999977 445 99999999999999998 8
Q ss_pred ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE
Q 048511 161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV 240 (351)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~ 240 (351)
+++..+. +|...|+++.+.+. ..+++|+.|++|++||+++.. +++..+.+|...+..+.+ .+++|+++
T Consensus 362 ~cl~sl~-----gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~----~c~~tl~~h~~~v~~l~~--~~~~Lvs~ 429 (537)
T KOG0274|consen 362 KCLKSLS-----GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR----KCIHTLQGHTSLVSSLLL--RDNFLVSS 429 (537)
T ss_pred eeeeeec-----CCcceEEEEEecCc-ceEEeeeeccceEeecCCchh----hhhhhhcCCccccccccc--ccceeEec
Confidence 8888887 89999999988665 899999999999999999963 579999999988866655 56789999
Q ss_pred eCCCcEEEEcCCCccccccCccceEEeccccc-cccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhce
Q 048511 241 SHDQTTRVFAPWKNVASLMGENSWHEVARPQV-HGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTL 313 (351)
Q Consensus 241 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~ 313 (351)
+.|+.|++||..+++ .+..+.+ |...|+.+++. ...+++++.||.+++||++ +...+.+
T Consensus 430 ~aD~~Ik~WD~~~~~----------~~~~~~~~~~~~v~~l~~~----~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 430 SADGTIKLWDAEEGE----------CLRTLEGRHVGGVSALALG----KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cccccEEEeecccCc----------eeeeeccCCcccEEEeecC----cceEEEEecCCeeEEEecccCchhhhh
Confidence 999999999998887 4444444 55667777664 3689999999999999987 7777665
No 84
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.7e-27 Score=195.96 Aligned_cols=241 Identities=21% Similarity=0.291 Sum_probs=192.0
Q ss_pred CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEE
Q 048511 29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES 108 (351)
Q Consensus 29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 108 (351)
.+.|.+++|+ |.+| -++.+|+| -.+.||+..+......+ ......+.+..|..||+++++|+..+.+++..
T Consensus 26 ~~~vssl~fs-p~~P-----~d~aVt~S--~rvqly~~~~~~~~k~~-srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD 96 (487)
T KOG0310|consen 26 HNSVSSLCFS-PKHP-----YDFAVTSS--VRVQLYSSVTRSVRKTF-SRFKDVVYSVDFRSDGRLLAAGDESGHVKVFD 96 (487)
T ss_pred cCcceeEecC-CCCC-----CceEEecc--cEEEEEecchhhhhhhH-HhhccceeEEEeecCCeEEEccCCcCcEEEec
Confidence 4689999999 2222 23444444 46999998876554433 23356788999999999999999999998765
Q ss_pred --------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEE
Q 048511 109 --------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYG 180 (351)
Q Consensus 109 --------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~ 180 (351)
.+.+|+.+|..+.|+| .++.. |++|+.|+.+++||+.+ ...... +.+|+..|.|
T Consensus 97 ~k~r~iLR~~~ah~apv~~~~f~~-----~d~t~------l~s~sDd~v~k~~d~s~--a~v~~~-----l~~htDYVR~ 158 (487)
T KOG0310|consen 97 MKSRVILRQLYAHQAPVHVTKFSP-----QDNTM------LVSGSDDKVVKYWDLST--AYVQAE-----LSGHTDYVRC 158 (487)
T ss_pred cccHHHHHHHhhccCceeEEEecc-----cCCeE------EEecCCCceEEEEEcCC--cEEEEE-----ecCCcceeEe
Confidence 3668999999999998 67778 99999999999999998 443222 3489999999
Q ss_pred EEEcCCC-CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccccc
Q 048511 181 GHWSPDG-RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM 259 (351)
Q Consensus 181 i~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~ 259 (351)
.+|+|.. ..+++|+.||.|++||++... ..+.++ .|..+|..+.+-|.|..+++++. ..|+|||+.++.
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~----~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~---- 228 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLT----SRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGG---- 228 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCC----ceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCc----
Confidence 9999965 488999999999999998863 234455 48899999999999999998874 589999998665
Q ss_pred CccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhce
Q 048511 260 GENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTL 313 (351)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~ 313 (351)
+.+.....|...|+|+.+.. ++..|++|+-|+.|++||.. -+.+..+
T Consensus 229 -----qll~~~~~H~KtVTcL~l~s--~~~rLlS~sLD~~VKVfd~t~~Kvv~s~ 276 (487)
T KOG0310|consen 229 -----QLLTSMFNHNKTVTCLRLAS--DSTRLLSGSLDRHVKVFDTTNYKVVHSW 276 (487)
T ss_pred -----eehhhhhcccceEEEEEeec--CCceEeecccccceEEEEccceEEEEee
Confidence 25555556999999999998 89999999999999999955 4444444
No 85
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.5e-27 Score=186.26 Aligned_cols=222 Identities=17% Similarity=0.211 Sum_probs=167.4
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+||.||+||+|+++..|.+.. .....|.++|.+++|+ .+|..+++|+.|+.+++||+.+++...
T Consensus 45 A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Ws--------ddgskVf~g~~Dk~~k~wDL~S~Q~~~------- 108 (347)
T KOG0647|consen 45 AGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWS--------DDGSKVFSGGCDKQAKLWDLASGQVSQ------- 108 (347)
T ss_pred ecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEc--------cCCceEEeeccCCceEEEEccCCCeee-------
Confidence 478999999999998565544 5667899999999999 899999999999999999999885432
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG 160 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 160 (351)
+..|..+|.++.|-+.. .... |++||.|++|+.||.+. .
T Consensus 109 -----------------------------v~~Hd~pvkt~~wv~~~----~~~c------l~TGSWDKTlKfWD~R~--~ 147 (347)
T KOG0647|consen 109 -----------------------------VAAHDAPVKTCHWVPGM----NYQC------LVTGSWDKTLKFWDTRS--S 147 (347)
T ss_pred -----------------------------eeecccceeEEEEecCC----Ccce------eEecccccceeecccCC--C
Confidence 34477788888877321 1224 78888888888888776 3
Q ss_pred ceEEEEEecc------------------------------------ccccccceEEEEEcCCCCEEEEEeeCCeEEEEEc
Q 048511 161 IWMNVVTVGE------------------------------------LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRN 204 (351)
Q Consensus 161 ~~~~~~~~~~------------------------------------~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~ 204 (351)
..+.++.+.+ .....-.++|++..++....+.|+.+|.+.+..+
T Consensus 148 ~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~i 227 (347)
T KOG0647|consen 148 NPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYI 227 (347)
T ss_pred CeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEec
Confidence 3333222111 0112345788998888888899999999999998
Q ss_pred ccCcccCccccccccccc---------ccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccccccc
Q 048511 205 VGVDIDNWQPQKVPSGHF---------AAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGH 275 (351)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~---------~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (351)
..... +.-.+++.|. ..|++|+|+|....|+|++.||++.+||-..+. .+...+.|..
T Consensus 228 d~~~~---~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~----------kLk~s~~~~q 294 (347)
T KOG0647|consen 228 DDPNP---KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDART----------KLKTSETHPQ 294 (347)
T ss_pred CCCCc---cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhh----------hhhccCcCCC
Confidence 77422 1122333343 357889999999999999999999999987766 5666678899
Q ss_pred ceeEEEEeeeCCCcEEEEe
Q 048511 276 DINCVTIIQGKGNHRFVSG 294 (351)
Q Consensus 276 ~i~~~~~~~~~~~~~l~s~ 294 (351)
+|+|++|+. +|.++|-+
T Consensus 295 pItcc~fn~--~G~ifaYA 311 (347)
T KOG0647|consen 295 PITCCSFNR--NGSIFAYA 311 (347)
T ss_pred ccceeEecC--CCCEEEEE
Confidence 999999999 88888744
No 86
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.6e-27 Score=193.56 Aligned_cols=255 Identities=18% Similarity=0.141 Sum_probs=203.5
Q ss_pred EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc--cceeecccccceeeeEeeecCCeEEe
Q 048511 20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS--SANTQSTYRKEVISLASYIEGPVLVA 97 (351)
Q Consensus 20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~ 97 (351)
+....+..|++.|+.+.|+ ++|++|||++.|.+..+|++..... +.....++..++..+.|+||.+++++
T Consensus 215 qt~qil~~htdEVWfl~FS--------~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLla 286 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFS--------HNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLA 286 (519)
T ss_pred hhhhhHhhCCCcEEEEEEc--------CCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEe
Confidence 3456788999999999999 8999999999999999999876554 23344456778899999999999999
Q ss_pred cCCceeEEEEEecc---------ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEe
Q 048511 98 GSSSYQVSVESLLI---------GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTV 168 (351)
Q Consensus 98 ~~~~~~~~~~~~~~---------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 168 (351)
++.+..+.+|.... +|...+.+++|. ||+.. +++|+.|+++..||+... .....+
T Consensus 287 Cg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~------pDg~~------~V~Gs~dr~i~~wdlDgn---~~~~W~- 350 (519)
T KOG0293|consen 287 CGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWC------PDGFR------FVTGSPDRTIIMWDLDGN---ILGNWE- 350 (519)
T ss_pred cCchHheeeccCCcchhhhhcccCcCCCcceeEEc------cCCce------eEecCCCCcEEEecCCcc---hhhccc-
Confidence 88777777765422 345789999999 78888 999999999999999852 222222
Q ss_pred ccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEE
Q 048511 169 GELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRV 248 (351)
Q Consensus 169 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~v 248 (351)
......|.+++..+||+++++.+.|..|++|+.++.. ... +.....+|++++.|.+++++++.=.+..+++
T Consensus 351 ---gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~-----dr~-lise~~~its~~iS~d~k~~LvnL~~qei~L 421 (519)
T KOG0293|consen 351 ---GVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV-----DRG-LISEEQPITSFSISKDGKLALVNLQDQEIHL 421 (519)
T ss_pred ---ccccceeEEEEEcCCCcEEEEEecccceeeechhhhh-----hhc-cccccCceeEEEEcCCCcEEEEEcccCeeEE
Confidence 0122458999999999999999999999999998752 122 3334568999999999999999889999999
Q ss_pred EcCCCccccccCccceEEeccccccccc--eeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeeccc
Q 048511 249 FAPWKNVASLMGENSWHEVARPQVHGHD--INCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATF 318 (351)
Q Consensus 249 wd~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~ 318 (351)
||++... .+.++.+|... +..-+|-. .+..++++||+|+.|+||+.. ++.+.+|.+|..
T Consensus 422 WDl~e~~----------lv~kY~Ghkq~~fiIrSCFgg-~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~ 483 (519)
T KOG0293|consen 422 WDLEENK----------LVRKYFGHKQGHFIIRSCFGG-GNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK 483 (519)
T ss_pred eecchhh----------HHHHhhcccccceEEEeccCC-CCcceEEecCCCceEEEEEccCCceeEeecCCcc
Confidence 9998655 67777777654 44444544 356899999999999999975 999999999874
No 87
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.4e-27 Score=197.59 Aligned_cols=224 Identities=20% Similarity=0.248 Sum_probs=186.3
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+..|.|+|||..+ . ..+..+.+|+.+|..+.|+ | .++..|++|+.|+.+++||+.+...
T Consensus 85 aGD~sG~V~vfD~k~-r--~iLR~~~ah~apv~~~~f~----~---~d~t~l~s~sDd~v~k~~d~s~a~v--------- 145 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKS-R--VILRQLYAHQAPVHVTKFS----P---QDNTMLVSGSDDKVVKYWDLSTAYV--------- 145 (487)
T ss_pred ccCCcCcEEEecccc-H--HHHHHHhhccCceeEEEec----c---cCCeEEEecCCCceEEEEEcCCcEE---------
Confidence 478889999999554 3 4577899999999999999 4 5677889999999999999987642
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG 160 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 160 (351)
...+.+|++.|.|.+|+| .++.+ ++|||.||.|++||++...
T Consensus 146 --------------------------~~~l~~htDYVR~g~~~~-----~~~hi------vvtGsYDg~vrl~DtR~~~- 187 (487)
T KOG0310|consen 146 --------------------------QAELSGHTDYVRCGDISP-----ANDHI------VVTGSYDGKVRLWDTRSLT- 187 (487)
T ss_pred --------------------------EEEecCCcceeEeecccc-----CCCeE------EEecCCCceEEEEEeccCC-
Confidence 134688999999999998 66778 9999999999999999842
Q ss_pred ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE
Q 048511 161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV 240 (351)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~ 240 (351)
.++..+ .|..+|..+.+-|.|..+++++. ..+++||+-++. +.+..+..|...|+|+++..++..|+++
T Consensus 188 ~~v~el------nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~----qll~~~~~H~KtVTcL~l~s~~~rLlS~ 256 (487)
T KOG0310|consen 188 SRVVEL------NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGG----QLLTSMFNHNKTVTCLRLASDSTRLLSG 256 (487)
T ss_pred ceeEEe------cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCc----eehhhhhcccceEEEEEeecCCceEeec
Confidence 444444 57889999999999998888765 469999998764 5566666699999999999999999999
Q ss_pred eCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511 241 SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA 305 (351)
Q Consensus 241 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~ 305 (351)
+-|+.|++||+.+-+ .+.... -.++|.+++.+| +++.++.|..||.+.+=+.
T Consensus 257 sLD~~VKVfd~t~~K----------vv~s~~-~~~pvLsiavs~--dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 257 SLDRHVKVFDTTNYK----------VVHSWK-YPGPVLSIAVSP--DDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred ccccceEEEEccceE----------EEEeee-cccceeeEEecC--CCceEEEecccceeeeehh
Confidence 999999999975544 555543 346799999999 9999999999999887743
No 88
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=9.5e-26 Score=169.69 Aligned_cols=248 Identities=18% Similarity=0.187 Sum_probs=191.3
Q ss_pred EeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc----eeecccccceeeeEeeec----CCe
Q 048511 23 CELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA----NTQSTYRKEVISLASYIE----GPV 94 (351)
Q Consensus 23 ~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~----~~~ 94 (351)
..-+.|.+.|.|.+|+ +.|++|+||+.|++|++.-++...+.. .....+...+..++|-.+ +.+
T Consensus 83 kr~khhkgsiyc~~ws--------~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~i 154 (350)
T KOG0641|consen 83 KRNKHHKGSIYCTAWS--------PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAI 154 (350)
T ss_pred eeccccCccEEEEEec--------CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceE
Confidence 3446789999999999 899999999999999998876554321 112234567778887543 445
Q ss_pred EEec-CCceeEE--------EEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEE
Q 048511 95 LVAG-SSSYQVS--------VESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNV 165 (351)
Q Consensus 95 l~~~-~~~~~~~--------~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 165 (351)
|+++ ..+..+. -...+.+|++-|.++- + .++.+ +++|+.|.+|++||++- ..++.+
T Consensus 155 l~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-s------wn~~m------~~sgsqdktirfwdlrv--~~~v~~ 219 (350)
T KOG0641|consen 155 LASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-S------WNGAM------FASGSQDKTIRFWDLRV--NSCVNT 219 (350)
T ss_pred EEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-E------ecCcE------EEccCCCceEEEEeeec--cceeee
Confidence 5543 3444443 2455789999888874 2 35677 99999999999999998 666665
Q ss_pred EEeccc--cccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCC
Q 048511 166 VTVGEL--SHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD 243 (351)
Q Consensus 166 ~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d 243 (351)
+..... .-....|..++..|.|+.|++|-.|....+||++.+ .+++.+..|...|.++.|+|...|+++++.|
T Consensus 220 l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~-----r~iq~f~phsadir~vrfsp~a~yllt~syd 294 (350)
T KOG0641|consen 220 LDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG-----RMIQRFHPHSADIRCVRFSPGAHYLLTCSYD 294 (350)
T ss_pred ccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC-----ceeeeeCCCccceeEEEeCCCceEEEEeccc
Confidence 542211 112356899999999999999999999999999998 6799999999999999999999999999999
Q ss_pred CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 244 QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 244 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
..|++-|++..-..+ + ++.....|...+..+.|+| ...-+++.+.|.++.+|-++
T Consensus 295 ~~ikltdlqgdla~e-----l-~~~vv~ehkdk~i~~rwh~--~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 295 MKIKLTDLQGDLAHE-----L-PIMVVAEHKDKAIQCRWHP--QDFSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEeecccchhhc-----C-ceEEEEeccCceEEEEecC--ccceeeeccCcceEEEeccC
Confidence 999999997653211 1 2233345777788889999 77889999999999999865
No 89
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=5.3e-27 Score=201.88 Aligned_cols=252 Identities=21% Similarity=0.294 Sum_probs=207.0
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeE-EEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRS-LDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTY 79 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~ 79 (351)
+||.||++++|+-.. +++.....+.+|.+.|.+ ++|. + .++.+|++|+.|++|.+|......+...+ ..+
T Consensus 30 s~sRd~t~~vw~~~~-~~~l~~~~~~~~~g~i~~~i~y~----e---~~~~~l~~g~~D~~i~v~~~~~~~P~~~L-kgH 100 (745)
T KOG0301|consen 30 SGSRDGTVKVWAKKG-KQYLETHAFEGPKGFIANSICYA----E---SDKGRLVVGGMDTTIIVFKLSQAEPLYTL-KGH 100 (745)
T ss_pred ecCCCCceeeeeccC-cccccceecccCcceeeccceec----c---ccCcceEeecccceEEEEecCCCCchhhh-hcc
Confidence 478999999999988 777777889999998888 8887 2 34557999999999999999887665544 345
Q ss_pred ccceeeeEeeecCCeEEecCCceeEEEEE------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511 80 RKEVISLASYIEGPVLVAGSSSYQVSVES------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW 153 (351)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 153 (351)
...+.++....++. +++|+.+...++|. .+.+|+..|++++..| +. . ++||+.|.+|++|
T Consensus 101 ~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~------e~-~------~vTgsaDKtIklW 166 (745)
T KOG0301|consen 101 KSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLP------EN-T------YVTGSADKTIKLW 166 (745)
T ss_pred ccceeeeecCCcCc-eEecccccceEEecchhhhcccCCcchheeeeeecC------CC-c------EEeccCcceeeec
Confidence 56777777777777 88999998888775 4889999999999994 44 5 9999999999999
Q ss_pred eccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC
Q 048511 154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS 233 (351)
Q Consensus 154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 233 (351)
.-. ..++++. +|..-|+.+++-+++ .+++++.||.|++|++.. .++..+.+|...|++++..++
T Consensus 167 k~~----~~l~tf~-----gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g------e~l~~~~ghtn~vYsis~~~~ 230 (745)
T KOG0301|consen 167 KGG----TLLKTFS-----GHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG------EVLLEMHGHTNFVYSISMALS 230 (745)
T ss_pred cCC----chhhhhc-----cchhheeeeEEecCC-CeEeecCCceEEEEeccC------ceeeeeeccceEEEEEEecCC
Confidence 863 4455555 899999999998764 488999999999999955 468899999999999998888
Q ss_pred CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 234 SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 234 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
+..++++++|++++||+.. . ....+...+..|+++.+.+ +| -|++|+.||.||||...
T Consensus 231 ~~~Ivs~gEDrtlriW~~~--e----------~~q~I~lPttsiWsa~~L~--Ng-DIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 231 DGLIVSTGEDRTLRIWKKD--E----------CVQVITLPTTSIWSAKVLL--NG-DIVVGGSDGRVRVFTVD 288 (745)
T ss_pred CCeEEEecCCceEEEeecC--c----------eEEEEecCccceEEEEEee--CC-CEEEeccCceEEEEEec
Confidence 8899999999999999975 2 3333334455799999988 44 58899999999999865
No 90
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=5.3e-28 Score=196.21 Aligned_cols=257 Identities=16% Similarity=0.190 Sum_probs=202.1
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
||+.|..|++|++.. ++.....++.|-.++|+.+.|. +++..+++++.|+.+++|++...+....+. ++.
T Consensus 192 tgg~Dr~Ik~W~v~~-~k~~~~~tLaGs~g~it~~d~d--------~~~~~~iAas~d~~~r~Wnvd~~r~~~TLs-GHt 261 (459)
T KOG0288|consen 192 TGGSDRIIKLWNVLG-EKSELISTLAGSLGNITSIDFD--------SDNKHVIAASNDKNLRLWNVDSLRLRHTLS-GHT 261 (459)
T ss_pred hcchhhhhhhhhccc-chhhhhhhhhccCCCcceeeec--------CCCceEEeecCCCceeeeeccchhhhhhhc-ccc
Confidence 688999999999998 6677788999999999999999 789999999999999999999876655444 477
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEecccc-------ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGH-------EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW 153 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h-------~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 153 (351)
..+.++.|......++.+..+..++.|..-.+. ...+..|... ... +++|..|+.|++|
T Consensus 262 dkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--------~~~------~~SgH~DkkvRfw 327 (459)
T KOG0288|consen 262 DKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--------ISD------VISGHFDKKVRFW 327 (459)
T ss_pred cceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--------cee------eeecccccceEEE
Confidence 788888888877778888888888776542211 1123333332 122 8999999999999
Q ss_pred eccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc----ccccEEEEE
Q 048511 154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG----HFAAVMDIS 229 (351)
Q Consensus 154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~----~~~~v~~v~ 229 (351)
|.+. ......+. . .+.|+++..++++..+++++.|.++.++|+++.++ ...+.+ .....+.+.
T Consensus 328 D~Rs--~~~~~sv~-----~-gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI-----~~~~sA~g~k~asDwtrvv 394 (459)
T KOG0288|consen 328 DIRS--ADKTRSVP-----L-GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI-----RQTFSAEGFKCASDWTRVV 394 (459)
T ss_pred eccC--CceeeEee-----c-CcceeeEeeccCCeEEeeecCCCceeeeecccccE-----EEEeeccccccccccceeE
Confidence 9998 66666665 2 34799999999999999999999999999999754 222221 122378899
Q ss_pred eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511 230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE 304 (351)
Q Consensus 230 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~ 304 (351)
|||++.|+++|+.||.|+||++.+++.. .+.........|++++|+| .|..+++++.++.+.+|.
T Consensus 395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE--------~~l~~s~s~~aI~s~~W~~--sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 395 FSPDGSYVAAGSADGSVYIWSVFTGKLE--------KVLSLSTSNAAITSLSWNP--SGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ECCCCceeeeccCCCcEEEEEccCceEE--------EEeccCCCCcceEEEEEcC--CCchhhcccCCcceEecC
Confidence 9999999999999999999999998732 1222222222599999999 899999999999999994
No 91
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.2e-27 Score=208.12 Aligned_cols=231 Identities=15% Similarity=0.231 Sum_probs=184.7
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
|++..|.|.+||+....+-..+..|..|+..|+++.|+ + ....+|+|||+||+|++||++......
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh----~---tep~iliSGSQDg~vK~~DlR~~~S~~------- 170 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFH----S---TEPNILISGSQDGTVKCWDLRSKKSKS------- 170 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeec----c---CCccEEEecCCCceEEEEeeecccccc-------
Confidence 57789999999998633335566788999999999999 2 345699999999999999998765442
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG 160 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 160 (351)
++.+....|..++|+| ..+.. |+++...|.+.+||++.. .
T Consensus 171 ----------------------------t~~~nSESiRDV~fsp-----~~~~~------F~s~~dsG~lqlWDlRqp-~ 210 (839)
T KOG0269|consen 171 ----------------------------TFRSNSESIRDVKFSP-----GYGNK------FASIHDSGYLQLWDLRQP-D 210 (839)
T ss_pred ----------------------------cccccchhhhceeecc-----CCCce------EEEecCCceEEEeeccCc-h
Confidence 2345677899999998 66777 999999999999999973 2
Q ss_pred ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCE-EEE
Q 048511 161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDY-LLS 239 (351)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~-l~s 239 (351)
.+...+ ..|.++|.|+.|+|++.+||+|+.|+.|+|||+.+.+. .+..++. ...+|..|+|-|+..+ |++
T Consensus 211 r~~~k~-----~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~---~~~~tIn-Tiapv~rVkWRP~~~~hLAt 281 (839)
T KOG0269|consen 211 RCEKKL-----TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA---KPKHTIN-TIAPVGRVKWRPARSYHLAT 281 (839)
T ss_pred hHHHHh-----hcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc---cceeEEe-ecceeeeeeeccCccchhhh
Confidence 333333 38999999999999999999999999999999987654 3333333 3468999999997765 677
Q ss_pred EeC--CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511 240 VSH--DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE 304 (351)
Q Consensus 240 ~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~ 304 (351)
++. |-.|+|||++..- -+...+..|...++.++|.. .|...+.+++.||+|..-.
T Consensus 282 csmv~dtsV~VWDvrRPY---------IP~~t~~eH~~~vt~i~W~~-~d~~~l~s~sKD~tv~qh~ 338 (839)
T KOG0269|consen 282 CSMVVDTSVHVWDVRRPY---------IPYATFLEHTDSVTGIAWDS-GDRINLWSCSKDGTVLQHL 338 (839)
T ss_pred hhccccceEEEEeecccc---------ccceeeeccCccccceeccC-CCceeeEeecCccHHHHhh
Confidence 664 7899999997665 36667778999999999976 4678889999999886543
No 92
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.1e-27 Score=180.34 Aligned_cols=217 Identities=20% Similarity=0.342 Sum_probs=178.2
Q ss_pred eeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeE
Q 048511 25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQV 104 (351)
Q Consensus 25 ~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 104 (351)
-..|.+.|..+... --|++||||+.|++|+|+..+.....
T Consensus 7 dt~H~D~IHda~lD--------yygkrlATcsSD~tVkIf~v~~n~~s-------------------------------- 46 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLD--------YYGKRLATCSSDGTVKIFEVRNNGQS-------------------------------- 46 (299)
T ss_pred hhhhhhhhhHhhhh--------hhcceeeeecCCccEEEEEEcCCCCc--------------------------------
Confidence 34688889888777 67999999999999999999876542
Q ss_pred EEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEc
Q 048511 105 SVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWS 184 (351)
Q Consensus 105 ~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 184 (351)
+++..|.||.++|+.++|.-. .-|.+ ||+++.||.|.||.-+. +.+.+.. ....|...|.+++|.
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahP----k~G~i------LAScsYDgkVIiWke~~--g~w~k~~---e~~~h~~SVNsV~wa 111 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHP----KFGTI------LASCSYDGKVIIWKEEN--GRWTKAY---EHAAHSASVNSVAWA 111 (299)
T ss_pred eeeeEecCCCCCeeEEeeccc----ccCcE------eeEeecCceEEEEecCC--Cchhhhh---hhhhhcccceeeccc
Confidence 344678999999999999721 47888 99999999999999887 5544333 245788999999999
Q ss_pred CC--CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC---C-----------CEEEEEeCCCcEEE
Q 048511 185 PD--GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS---S-----------DYLLSVSHDQTTRV 248 (351)
Q Consensus 185 ~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~---~-----------~~l~s~~~dg~i~v 248 (351)
|. |-.|++++.||.|.+.+.+... .+...+....|.-.|++++|.|. | +.|++|+.|..|+|
T Consensus 112 pheygl~LacasSDG~vsvl~~~~~g--~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~Vki 189 (299)
T KOG1332|consen 112 PHEYGLLLACASSDGKVSVLTYDSSG--GWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKI 189 (299)
T ss_pred ccccceEEEEeeCCCcEEEEEEcCCC--CccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceee
Confidence 85 5689999999999999997651 23455667789999999999995 4 56999999999999
Q ss_pred EcCCCccccccCccceEEeccccccccceeEEEEeeeC--CCcEEEEecCCCeEEEEecC
Q 048511 249 FAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGK--GNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 249 wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~l~s~~~dg~v~vw~~~ 306 (351)
|+..+.. |..-..+.+|...|+.++|.|.. ...+||+++.||+|.||...
T Consensus 190 W~~~~~~--------w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 190 WKFDSDS--------WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred eecCCcc--------hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence 9998764 55556688999999999999932 24689999999999999865
No 93
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.6e-27 Score=203.64 Aligned_cols=215 Identities=15% Similarity=0.273 Sum_probs=177.1
Q ss_pred CCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCC
Q 048511 47 AISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPS 126 (351)
Q Consensus 47 ~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 126 (351)
+.+++|+|||.||.|++|++......... .....++.|.++|+.+...
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~-----------------------------~~~asme~HsDWVNDiiL~--- 82 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPST-----------------------------PYIASMEHHSDWVNDIILC--- 82 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCccc-----------------------------chhhhhhhhHhHHhhHHhh---
Confidence 67789999999999999998754322111 0124567899999999998
Q ss_pred CCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEE-cCCCCEEEEEeeCCeEEEEEcc
Q 048511 127 TAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHW-SPDGRSILAHGYGGAFHLWRNV 205 (351)
Q Consensus 127 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~-~~~~~~l~~~~~dg~i~~~d~~ 205 (351)
.+++. |+++|.|-+|++|+.....--++.++ ..|...|.|++. .++...+|+|+.|+.|.+||++
T Consensus 83 ---~~~~t------lIS~SsDtTVK~W~~~~~~~~c~sti-----r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin 148 (735)
T KOG0308|consen 83 ---GNGKT------LISASSDTTVKVWNAHKDNTFCMSTI-----RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDIN 148 (735)
T ss_pred ---cCCCc------eEEecCCceEEEeecccCcchhHhhh-----hcccchheeeeecccCceeEEecCCCccEEEEEcc
Confidence 78888 99999999999999987321344444 489999999999 7788899999999999999998
Q ss_pred cCcc-----cCcccccccc-cccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeE
Q 048511 206 GVDI-----DNWQPQKVPS-GHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINC 279 (351)
Q Consensus 206 ~~~~-----~~~~~~~~~~-~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (351)
++.. ........+. ++...|++++.++.|..|++|+..+.+++||.++.+ .+.++++|...|.+
T Consensus 149 ~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~----------kimkLrGHTdNVr~ 218 (735)
T KOG0308|consen 149 TGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK----------KIMKLRGHTDNVRV 218 (735)
T ss_pred CcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccccc----------ceeeeeccccceEE
Confidence 7632 1112233333 788899999999999999999999999999999988 77788899999999
Q ss_pred EEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecccc
Q 048511 280 VTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATFQ 319 (351)
Q Consensus 280 ~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~ 319 (351)
+..++ ||..++++|.||+|++||+. +.++.++..|...
T Consensus 219 ll~~d--DGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~ 257 (735)
T KOG0308|consen 219 LLVND--DGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG 257 (735)
T ss_pred EEEcC--CCCeEeecCCCceEEeeeccccceeeeEEeccCc
Confidence 99998 99999999999999999998 8889888877643
No 94
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.3e-27 Score=184.76 Aligned_cols=235 Identities=23% Similarity=0.335 Sum_probs=194.7
Q ss_pred EEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeE
Q 048511 8 IHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLA 87 (351)
Q Consensus 8 i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 87 (351)
|..|...+ -++..+..+.||.+.|+.++.. .....+.|++.|.+-+||.++++.++
T Consensus 128 vssFk~~t-~~~~lvre~~GHkDGiW~Vaa~--------~tqpi~gtASADhTA~iWs~Esg~CL--------------- 183 (481)
T KOG0300|consen 128 VSSFKDGT-VKFRLVRELEGHKDGIWHVAAD--------STQPICGTASADHTARIWSLESGACL--------------- 183 (481)
T ss_pred eeeecCCc-eeEeehhhhcccccceeeehhh--------cCCcceeecccccceeEEeeccccce---------------
Confidence 44454444 4567788899999999999988 66779999999999999999998765
Q ss_pred eeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEecc------CC---
Q 048511 88 SYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPE------KT--- 158 (351)
Q Consensus 88 ~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~------~~--- 158 (351)
..+.||.+.|++++|+ +.+.+ +++++.|++.+||... ..
T Consensus 184 --------------------~~Y~GH~GSVNsikfh------~s~~L------~lTaSGD~taHIW~~av~~~vP~~~a~ 231 (481)
T KOG0300|consen 184 --------------------ATYTGHTGSVNSIKFH------NSGLL------LLTASGDETAHIWKAAVNWEVPSNNAP 231 (481)
T ss_pred --------------------eeecccccceeeEEec------cccce------EEEccCCcchHHHHHhhcCcCCCCCCC
Confidence 3467899999999999 67788 9999999999999832 10
Q ss_pred ------------------------CcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccc
Q 048511 159 ------------------------TGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQP 214 (351)
Q Consensus 159 ------------------------~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 214 (351)
........++..+.+|...|.+..|-..|+.+++++.|.+-.+||++++ .+
T Consensus 232 ~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg-----e~ 306 (481)
T KOG0300|consen 232 SDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG-----EV 306 (481)
T ss_pred CCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC-----ce
Confidence 0000112334445688888999999999999999999999999999998 67
Q ss_pred ccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEe
Q 048511 215 QKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSG 294 (351)
Q Consensus 215 ~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~ 294 (351)
+..+.+|....+-++-+|..+++++.+.|.+.++||++.. +..+..+++|...|+++.|.- +..+++|
T Consensus 307 v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea---------I~sV~VFQGHtdtVTS~vF~~---dd~vVSg 374 (481)
T KOG0300|consen 307 VNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA---------IQSVAVFQGHTDTVTSVVFNT---DDRVVSG 374 (481)
T ss_pred eccccCcchhccccccCCcceEEEEeccCceeEeccchhh---------cceeeeecccccceeEEEEec---CCceeec
Confidence 9999999999999999999999999999999999999733 357788999999999999987 6789999
Q ss_pred cCCCeEEEEecC--chhhhceee
Q 048511 295 ADEKVARVFEAP--LSFLKTLNH 315 (351)
Q Consensus 295 ~~dg~v~vw~~~--~~~~~~~~~ 315 (351)
++|.+|+|||+. ...+.++..
T Consensus 375 SDDrTvKvWdLrNMRsplATIRt 397 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMRSPLATIRT 397 (481)
T ss_pred CCCceEEEeeeccccCcceeeec
Confidence 999999999986 444555443
No 95
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=3.3e-26 Score=206.43 Aligned_cols=252 Identities=19% Similarity=0.302 Sum_probs=193.7
Q ss_pred CCC--CCceEEEEEccCC---------CceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCC
Q 048511 1 MGG--LDNKIHLYRGQRT---------GKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALR 69 (351)
Q Consensus 1 tg~--~dg~i~vw~~~~~---------~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~ 69 (351)
||+ .||.++||+.+.- .....+.+...|.+.|+|+.|+ ++|.+||+||.|+.|.||.....
T Consensus 30 TgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S--------~dG~~lAsGSDD~~v~iW~~~~~ 101 (942)
T KOG0973|consen 30 TGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFS--------PDGSYLASGSDDRLVMIWERAEI 101 (942)
T ss_pred cCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEEC--------CCCCeEeeccCcceEEEeeeccc
Confidence 567 8999999986640 1134567788999999999999 89999999999999999998741
Q ss_pred cccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCe
Q 048511 70 GSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT 149 (351)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~ 149 (351)
...... ...|. ....-..+....+.+|...|..++|+ |++.+ |++++.|++
T Consensus 102 -~~~~~f------------gs~g~----~~~vE~wk~~~~l~~H~~DV~Dv~Ws------p~~~~------lvS~s~Dns 152 (942)
T KOG0973|consen 102 -GSGTVF------------GSTGG----AKNVESWKVVSILRGHDSDVLDVNWS------PDDSL------LVSVSLDNS 152 (942)
T ss_pred -CCcccc------------ccccc----ccccceeeEEEEEecCCCccceeccC------CCccE------EEEecccce
Confidence 100000 00000 00112335667789999999999999 78899 999999999
Q ss_pred EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCc---------------------
Q 048511 150 MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVD--------------------- 208 (351)
Q Consensus 150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~--------------------- 208 (351)
|.|||.++ ...+..+. +|...|..+.|+|-|++|++-+.|++|++|++..-.
T Consensus 153 Viiwn~~t--F~~~~vl~-----~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~Rl 225 (942)
T KOG0973|consen 153 VIIWNAKT--FELLKVLR-----GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRL 225 (942)
T ss_pred EEEEcccc--ceeeeeee-----cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeec
Confidence 99999999 66666666 899999999999999999999999999999954310
Q ss_pred --------------------------ccCcccccccccccccEEEEEeecC-----CC------------EEEEEeCCCc
Q 048511 209 --------------------------IDNWQPQKVPSGHFAAVMDISWSRS-----SD------------YLLSVSHDQT 245 (351)
Q Consensus 209 --------------------------~~~~~~~~~~~~~~~~v~~v~~sp~-----~~------------~l~s~~~dg~ 245 (351)
...|+.-..+-+|.+++..+.|+|. .. .+|+|+.|++
T Consensus 226 SWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrS 305 (942)
T KOG0973|consen 226 SWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRS 305 (942)
T ss_pred ccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCcc
Confidence 0123334456689999999999982 11 5789999999
Q ss_pred EEEEcCCCccccccCccceEEec-cccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCch
Q 048511 246 TRVFAPWKNVASLMGENSWHEVA-RPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLS 308 (351)
Q Consensus 246 i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 308 (351)
|.||.....+ ++. ........|..++|+| ||..|.++|.||.|.++.++.+
T Consensus 306 lSVW~T~~~R----------Pl~vi~~lf~~SI~DmsWsp--dG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 306 LSVWNTALPR----------PLFVIHNLFNKSIVDMSWSP--DGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred EEEEecCCCC----------chhhhhhhhcCceeeeeEcC--CCCeEEEEecCCeEEEEEcchH
Confidence 9999985554 221 1223456799999999 9999999999999999998733
No 96
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.2e-25 Score=199.29 Aligned_cols=230 Identities=17% Similarity=0.235 Sum_probs=167.3
Q ss_pred CCCCCceEEEEEccCCCce-----EEEEeeeecCCceeEEEeeCCcccCCCCC-ccEEEEeeCCCcEEEEecCCCcccce
Q 048511 1 MGGLDNKIHLYRGQRTGKF-----VRACELKGHTDWIRSLDFSLPVCTSGEAI-SILLVSSSQDKVIRIWKLALRGSSAN 74 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~-----~~~~~~~~h~~~V~~l~~~~~~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~ 74 (351)
+|+.|++|++||+.. +.. ..+..+.+|...|.+++|+ ++ +.+|++++.|++|+|||+.++...
T Consensus 93 SgS~DgtIkIWdi~~-~~~~~~~~~~l~~L~gH~~~V~~l~f~--------P~~~~iLaSgs~DgtVrIWDl~tg~~~-- 161 (493)
T PTZ00421 93 TASEDGTIMGWGIPE-EGLTQNISDPIVHLQGHTKKVGIVSFH--------PSAMNVLASAGADMVVNVWDVERGKAV-- 161 (493)
T ss_pred EEeCCCEEEEEecCC-CccccccCcceEEecCCCCcEEEEEeC--------cCCCCEEEEEeCCCEEEEEECCCCeEE--
Confidence 578999999999976 321 3466889999999999999 55 469999999999999999876432
Q ss_pred eecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEe
Q 048511 75 TQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQ 154 (351)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd 154 (351)
..+.+|.+.|.+++|+ +++.+ |++++.|++|++||
T Consensus 162 ---------------------------------~~l~~h~~~V~sla~s------pdG~l------Latgs~Dg~IrIwD 196 (493)
T PTZ00421 162 ---------------------------------EVIKCHSDQITSLEWN------LDGSL------LCTTSKDKKLNIID 196 (493)
T ss_pred ---------------------------------EEEcCCCCceEEEEEE------CCCCE------EEEecCCCEEEEEE
Confidence 2356799999999999 78889 99999999999999
Q ss_pred ccCCCcceEEEEEeccccccccc-eEEEEEcCCCCEEEEEe----eCCeEEEEEcccCcccCccccccccc-ccccEEEE
Q 048511 155 PEKTTGIWMNVVTVGELSHSALG-FYGGHWSPDGRSILAHG----YGGAFHLWRNVGVDIDNWQPQKVPSG-HFAAVMDI 228 (351)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~----~dg~i~~~d~~~~~~~~~~~~~~~~~-~~~~v~~v 228 (351)
+++ +..+..+. .|... +..+.|.+++..+++++ .|+.|++||++... .+...... +...+...
T Consensus 197 ~rs--g~~v~tl~-----~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~----~p~~~~~~d~~~~~~~~ 265 (493)
T PTZ00421 197 PRD--GTIVSSVE-----AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA----SPYSTVDLDQSSALFIP 265 (493)
T ss_pred CCC--CcEEEEEe-----cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC----CceeEeccCCCCceEEE
Confidence 998 66665554 45443 45678889888777665 47899999998753 23333332 23455667
Q ss_pred EeecCCCEEEEEe-CCCcEEEEcCCCccccccCccceEEeccc-cccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 229 SWSRSSDYLLSVS-HDQTTRVFAPWKNVASLMGENSWHEVARP-QVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 229 ~~sp~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
.|++++.+|++++ .|+.|++||+.++.. +... ..+..++..++|.| . +-+-...--..|+|.+.
T Consensus 266 ~~d~d~~~L~lggkgDg~Iriwdl~~~~~----------~~~~~~~s~~~~~g~~~~p--k--~~~dv~~~Ei~r~~~l~ 331 (493)
T PTZ00421 266 FFDEDTNLLYIGSKGEGNIRCFELMNERL----------TFCSSYSSVEPHKGLCMMP--K--WSLDTRKCEIARFYALT 331 (493)
T ss_pred EEcCCCCEEEEEEeCCCeEEEEEeeCCce----------EEEeeccCCCCCcceEecc--c--ccccccceeeeEEEEec
Confidence 7899999998887 499999999988762 2111 12344578888888 1 22222233345677765
Q ss_pred chhhh
Q 048511 307 LSFLK 311 (351)
Q Consensus 307 ~~~~~ 311 (351)
.+.+.
T Consensus 332 ~~~i~ 336 (493)
T PTZ00421 332 YHSLY 336 (493)
T ss_pred CCeEE
Confidence 44333
No 97
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=1.7e-27 Score=193.24 Aligned_cols=252 Identities=17% Similarity=0.181 Sum_probs=200.9
Q ss_pred EEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc-cceeecccccceeeeEeeecCCeEEecCC
Q 048511 22 ACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS-SANTQSTYRKEVISLASYIEGPVLVAGSS 100 (351)
Q Consensus 22 ~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 100 (351)
...+..|.+.|..+.|- ++...|+||+.|..|++|+....+. ......+...++..+.|.++++.+++++.
T Consensus 168 ~~~ld~h~gev~~v~~l--------~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~ 239 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFL--------RNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASN 239 (459)
T ss_pred hhhhhccccccceeEEc--------cCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecC
Confidence 34678899999999999 7788999999999999999987652 23334445667999999999999999998
Q ss_pred ceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccc
Q 048511 101 SYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELS 172 (351)
Q Consensus 101 ~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 172 (351)
+...++|. ++.||++.|+++.|. ..... +++|+.|.+|++||+.. ..+.+++.+
T Consensus 240 d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~------~~~~~------vVsgs~DRtiK~WDl~k--~~C~kt~l~---- 301 (459)
T KOG0288|consen 240 DKNLRLWNVDSLRLRHTLSGHTDKVTAAKFK------LSHSR------VVSGSADRTIKLWDLQK--AYCSKTVLP---- 301 (459)
T ss_pred CCceeeeeccchhhhhhhcccccceeeehhh------ccccc------eeeccccchhhhhhhhh--hheeccccc----
Confidence 88777665 588999999999999 55566 99999999999999998 777766542
Q ss_pred ccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCC
Q 048511 173 HSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPW 252 (351)
Q Consensus 173 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~ 252 (351)
...+..|+.+ ...++++..|+.|++||.++. .+......+. .|+++..++++..|.+++.|.++.+.|++
T Consensus 302 --~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~-----~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlR 371 (459)
T KOG0288|consen 302 --GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSA-----DKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLR 371 (459)
T ss_pred --cccccceEec--ceeeeecccccceEEEeccCC-----ceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecc
Confidence 2234455554 567899999999999999987 4566666554 89999999999999999999999999999
Q ss_pred CccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511 253 KNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT 317 (351)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~ 317 (351)
+.... .......+ -..+..+.+.|+| ++.|+++||.||.|+||++. +++.+.++...
T Consensus 372 t~eI~-----~~~sA~g~-k~asDwtrvvfSp--d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~ 429 (459)
T KOG0288|consen 372 TKEIR-----QTFSAEGF-KCASDWTRVVFSP--DGSYVAAGSADGSVYIWSVFTGKLEKVLSLST 429 (459)
T ss_pred cccEE-----EEeecccc-ccccccceeEECC--CCceeeeccCCCcEEEEEccCceEEEEeccCC
Confidence 87621 11111111 1234489999999 99999999999999999987 77776666544
No 98
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.4e-26 Score=179.03 Aligned_cols=265 Identities=18% Similarity=0.226 Sum_probs=184.3
Q ss_pred EEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc--eeec-ccccceeeeEeeecCCeEEec
Q 048511 22 ACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA--NTQS-TYRKEVISLASYIEGPVLVAG 98 (351)
Q Consensus 22 ~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~l~~~ 98 (351)
+..|++|.+.|++|+|+ .+|++|||++.|++|++|+++...... .+.. ..-...+.+.|.||.+.+++.
T Consensus 79 ~~~LKgH~~~vt~~~Fs--------SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~ 150 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFS--------SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVS 150 (420)
T ss_pred hhhhhccCCceeeeEEc--------CCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEE
Confidence 45789999999999999 899999999999999999998653211 1111 112356788899988766654
Q ss_pred CCce-eEEEEEe--------------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC
Q 048511 99 SSSY-QVSVESL--------------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK 157 (351)
Q Consensus 99 ~~~~-~~~~~~~--------------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 157 (351)
...+ .+.+... -..|.-.+..+-.. ..+.+ |++++.|..|.+|+++
T Consensus 151 ~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA------~~~k~------imsas~dt~i~lw~lk- 217 (420)
T KOG2096|consen 151 VKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA------GNAKY------IMSASLDTKICLWDLK- 217 (420)
T ss_pred EccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeec------CCceE------EEEecCCCcEEEEecC-
Confidence 3222 2221111 12244455555555 56777 9999999999999998
Q ss_pred CCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcc---cCcccCcccccccccccccEEEEEeecCC
Q 048511 158 TTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNV---GVDIDNWQPQKVPSGHFAAVMDISWSRSS 234 (351)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~---~~~~~~~~~~~~~~~~~~~v~~v~~sp~~ 234 (351)
|+.+..+. .....-+..+.+|+|+++++++.--.|++|.+- .+..+.-..+.++++|.+.|..++|+|+.
T Consensus 218 --Gq~L~~id-----tnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S 290 (420)
T KOG2096|consen 218 --GQLLQSID-----TNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS 290 (420)
T ss_pred --Cceeeeec-----cccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc
Confidence 56666554 445556778999999999999999999999973 33333334567889999999999999999
Q ss_pred CEEEEEeCCCcEEEEcCCCccccccCccceEEecc-ccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhc
Q 048511 235 DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVAR-PQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKT 312 (351)
Q Consensus 235 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~ 312 (351)
..+++.+.||+++|||+.-.-........++.... +...+.....++.+| +++.||.. ....+++|..+ ++...+
T Consensus 291 ~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP--~g~~lA~s-~gs~l~~~~se~g~~~~~ 367 (420)
T KOG2096|consen 291 TRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP--SGDSLAVS-FGSDLKVFASEDGKDYPE 367 (420)
T ss_pred ceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCC--CCcEEEee-cCCceEEEEcccCccchh
Confidence 99999999999999998644321111122222211 122233445899999 77776655 44467888865 666665
Q ss_pred eeecc
Q 048511 313 LNHAT 317 (351)
Q Consensus 313 ~~~~~ 317 (351)
++...
T Consensus 368 ~e~~h 372 (420)
T KOG2096|consen 368 LEDIH 372 (420)
T ss_pred HHHhh
Confidence 55433
No 99
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.1e-24 Score=163.99 Aligned_cols=256 Identities=16% Similarity=0.157 Sum_probs=200.9
Q ss_pred CceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCC------Ccc--------cceeecccccc
Q 048511 17 GKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLAL------RGS--------SANTQSTYRKE 82 (351)
Q Consensus 17 ~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~------~~~--------~~~~~~~~~~~ 82 (351)
..+..+..+. .+..|.+++|+ |.|.+.+.|+..++++|-.... ... +......+...
T Consensus 21 ~~f~~i~~l~-dsqairav~fh--------p~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgs 91 (350)
T KOG0641|consen 21 KHFEAINILE-DSQAIRAVAFH--------PAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGS 91 (350)
T ss_pred cceEEEEEec-chhheeeEEec--------CCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCcc
Confidence 4456666665 46789999999 8899999999999998864321 111 12223344778
Q ss_pred eeeeEeeecCCeEEecCCceeEEEEE-------------eccccccceEEEEecCCCCCCCCCcccCCCceeEEee-cCC
Q 048511 83 VISLASYIEGPVLVAGSSSYQVSVES-------------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS-MDK 148 (351)
Q Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~~-------------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~-~d~ 148 (351)
+.+.+|+|.|+++++|+.+..++... .+.-|.+.|..++|..... ..+.+ |++++ .|.
T Consensus 92 iyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~--s~~~i------l~s~gagdc 163 (350)
T KOG0641|consen 92 IYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPE--SGGAI------LASAGAGDC 163 (350)
T ss_pred EEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCC--cCceE------EEecCCCcc
Confidence 89999999999999999999887654 2455888999999985443 33444 66665 477
Q ss_pred eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc-------c
Q 048511 149 TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG-------H 221 (351)
Q Consensus 149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-------~ 221 (351)
.|++-|... ++....+. +|.+-|..+- +-++-.+++|+.|.+|++||++-. .++.++.. .
T Consensus 164 ~iy~tdc~~--g~~~~a~s-----ghtghilaly-swn~~m~~sgsqdktirfwdlrv~-----~~v~~l~~~~~~~gle 230 (350)
T KOG0641|consen 164 KIYITDCGR--GQGFHALS-----GHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVN-----SCVNTLDNDFHDGGLE 230 (350)
T ss_pred eEEEeecCC--CCcceeec-----CCcccEEEEE-EecCcEEEccCCCceEEEEeeecc-----ceeeeccCcccCCCcc
Confidence 788888887 66666655 8888887752 346788999999999999999876 34544432 2
Q ss_pred cccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEE
Q 048511 222 FAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVAR 301 (351)
Q Consensus 222 ~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~ 301 (351)
.+.|.+++..|.|++|++|-.|....+||++.++ .+.++..|...|.|+.|+| ...++++++.|..|+
T Consensus 231 ssavaav~vdpsgrll~sg~~dssc~lydirg~r----------~iq~f~phsadir~vrfsp--~a~yllt~syd~~ik 298 (350)
T KOG0641|consen 231 SSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR----------MIQRFHPHSADIRCVRFSP--GAHYLLTCSYDMKIK 298 (350)
T ss_pred cceeEEEEECCCcceeeeccCCCceEEEEeeCCc----------eeeeeCCCccceeEEEeCC--CceEEEEecccceEE
Confidence 3579999999999999999999999999999987 7888889999999999999 889999999999999
Q ss_pred EEecCchhhhcee
Q 048511 302 VFEAPLSFLKTLN 314 (351)
Q Consensus 302 vw~~~~~~~~~~~ 314 (351)
+=|+.|.+...|.
T Consensus 299 ltdlqgdla~el~ 311 (350)
T KOG0641|consen 299 LTDLQGDLAHELP 311 (350)
T ss_pred EeecccchhhcCc
Confidence 9999987766554
No 100
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=2.4e-26 Score=188.92 Aligned_cols=225 Identities=15% Similarity=0.183 Sum_probs=175.8
Q ss_pred eecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEE
Q 048511 26 KGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVS 105 (351)
Q Consensus 26 ~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 105 (351)
--|.+.|+.+.+. | .+..++||.+..+.|.|||..+.......... .+
T Consensus 121 i~h~gEVnRaRym----P---Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~-------------------------~~ 168 (422)
T KOG0264|consen 121 INHDGEVNRARYM----P---QNPNIVATKTSSGDVYVFDYTKHPSKPKASGE-------------------------CR 168 (422)
T ss_pred ccCCccchhhhhC----C---CCCcEEEecCCCCCEEEEEeccCCCccccccc-------------------------CC
Confidence 4589999999998 3 56678899999999999998765433221100 01
Q ss_pred EEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC
Q 048511 106 VESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP 185 (351)
Q Consensus 106 ~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~ 185 (351)
..-.+.+|.+.-++|.|++. ..-. |++++.|++|++||+...............+.+|...|..++|++
T Consensus 169 Pdl~L~gH~~eg~glsWn~~-----~~g~------Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~ 237 (422)
T KOG0264|consen 169 PDLRLKGHEKEGYGLSWNRQ-----QEGT------LLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHP 237 (422)
T ss_pred CceEEEeecccccccccccc-----ccee------EeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccc
Confidence 12346789888888999962 2334 999999999999999874321111111222458999999999999
Q ss_pred C-CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec-CCCEEEEEeCCCcEEEEcCCCccccccCccc
Q 048511 186 D-GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR-SSDYLLSVSHDQTTRVFAPWKNVASLMGENS 263 (351)
Q Consensus 186 ~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 263 (351)
- ...+++++.|+.+.|||+++.. .++.....+|.+.|.+++|+| ++.+||||+.|++|++||+|+..
T Consensus 238 ~h~~lF~sv~dd~~L~iwD~R~~~---~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~-------- 306 (422)
T KOG0264|consen 238 LHEDLFGSVGDDGKLMIWDTRSNT---SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN-------- 306 (422)
T ss_pred cchhhheeecCCCeEEEEEcCCCC---CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc--------
Confidence 5 4578899999999999999632 267888899999999999999 55678999999999999999887
Q ss_pred eEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 264 WHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
+++..+.+|...|.++.|+| .....||+++.|+++.|||+.
T Consensus 307 -~~lh~~e~H~dev~~V~WSP-h~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 307 -KPLHTFEGHEDEVFQVEWSP-HNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred -cCceeccCCCcceEEEEeCC-CCCceeEecccCCcEEEEecc
Confidence 36778889999999999999 457788999999999999986
No 101
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.2e-25 Score=184.91 Aligned_cols=250 Identities=17% Similarity=0.230 Sum_probs=197.9
Q ss_pred EEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc-ee---------------e-ccccccee
Q 048511 22 ACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA-NT---------------Q-STYRKEVI 84 (351)
Q Consensus 22 ~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~-~~---------------~-~~~~~~~~ 84 (351)
...+..|.-+|.+|+++ +++++.++++.|++|.-|++.++.... .. . ..+...++
T Consensus 135 ~~~~~~H~~s~~~vals--------~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil 206 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALS--------PDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEIL 206 (479)
T ss_pred ceeeccccCcceEEEee--------ccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeE
Confidence 45667899999999999 889999999999999999998776331 00 0 13456788
Q ss_pred eeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEecc
Q 048511 85 SLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPE 156 (351)
Q Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 156 (351)
+++.+++|++|++|+.+..+.+|. .+.+|.+.|.+++|- ..... +.+++.|+.|++|++.
T Consensus 207 ~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr------~gt~~------lys~s~Drsvkvw~~~ 274 (479)
T KOG0299|consen 207 TLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFR------KGTSE------LYSASADRSVKVWSID 274 (479)
T ss_pred EEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeee------cCccc------eeeeecCCceEEEehh
Confidence 999999999999999999887664 478999999999998 55556 9999999999999999
Q ss_pred CCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCE
Q 048511 157 KTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDY 236 (351)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 236 (351)
. ...+.++. +|...|..|.....++.+-+|+.|.++++|++... ....+.++.+.+-+++|-.+. .
T Consensus 275 ~--~s~vetly-----GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee------sqlifrg~~~sidcv~~In~~-H 340 (479)
T KOG0299|consen 275 Q--LSYVETLY-----GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE------SQLIFRGGEGSIDCVAFINDE-H 340 (479)
T ss_pred H--hHHHHHHh-----CCccceeeechhcccceEEeccccceeEEEecccc------ceeeeeCCCCCeeeEEEeccc-c
Confidence 8 55555554 89999999998888888888899999999999553 345667888899999998764 6
Q ss_pred EEEEeCCCcEEEEcCCCccccccCccceEEec--cccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511 237 LLSVSHDQTTRVFAPWKNVASLMGENSWHEVA--RPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 237 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 307 (351)
|++|+.||.|.+|++...+........-.... ....+...|++++..| ...++++|+.+|.||+|.+..
T Consensus 341 fvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~--~sdL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 341 FVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIP--GSDLLASGSWSGCVRLWKIED 411 (479)
T ss_pred eeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecc--cCceEEecCCCCceEEEEecC
Confidence 89999999999999987762110000000000 0011223799999999 899999999999999999873
No 102
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.3e-25 Score=173.95 Aligned_cols=222 Identities=19% Similarity=0.222 Sum_probs=175.8
Q ss_pred CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511 4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV 83 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 83 (351)
.|.+||..++.+ + +.++.+.||...|++|+.+ |-++.+++++.|++|++||++..++...+.
T Consensus 78 ~d~tIryLsl~d-N--kylRYF~GH~~~V~sL~~s--------P~~d~FlS~S~D~tvrLWDlR~~~cqg~l~------- 139 (311)
T KOG1446|consen 78 EDDTIRYLSLHD-N--KYLRYFPGHKKRVNSLSVS--------PKDDTFLSSSLDKTVRLWDLRVKKCQGLLN------- 139 (311)
T ss_pred CCCceEEEEeec-C--ceEEEcCCCCceEEEEEec--------CCCCeEEecccCCeEEeeEecCCCCceEEe-------
Confidence 378999999998 6 4678999999999999999 778999999999999999999765543222
Q ss_pred eeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceE
Q 048511 84 ISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWM 163 (351)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 163 (351)
...-..++|. |.|-+ +|++...+.|++||++..+..+.
T Consensus 140 ------------------------------~~~~pi~AfD------p~GLi------fA~~~~~~~IkLyD~Rs~dkgPF 177 (311)
T KOG1446|consen 140 ------------------------------LSGRPIAAFD------PEGLI------FALANGSELIKLYDLRSFDKGPF 177 (311)
T ss_pred ------------------------------cCCCcceeEC------CCCcE------EEEecCCCeEEEEEecccCCCCc
Confidence 1223356888 67888 89988888999999998666666
Q ss_pred EEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccccccc---EEEEEeecCCCEEEEE
Q 048511 164 NVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAA---VMDISWSRSSDYLLSV 240 (351)
Q Consensus 164 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~---v~~v~~sp~~~~l~s~ 240 (351)
.++.+.. ........+.|+|+|++|+.+...+.+++.|.-.+. .+.++..+... -.+.+|+||++++++|
T Consensus 178 ~tf~i~~--~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~-----~~~tfs~~~~~~~~~~~a~ftPds~Fvl~g 250 (311)
T KOG1446|consen 178 TTFSITD--NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT-----VKSTFSGYPNAGNLPLSATFTPDSKFVLSG 250 (311)
T ss_pred eeEccCC--CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc-----EeeeEeeccCCCCcceeEEECCCCcEEEEe
Confidence 6666433 445678999999999999999999999999998873 45555554432 2567899999999999
Q ss_pred eCCCcEEEEcCCCccccccCccceEEeccccc-cccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 241 SHDQTTRVFAPWKNVASLMGENSWHEVARPQV-HGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 241 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
+.||+|.+|+++++. .+..+++ +..++.|+.|+| .-.++++ .+..+.+|-..
T Consensus 251 s~dg~i~vw~~~tg~----------~v~~~~~~~~~~~~~~~fnP--~~~mf~s--a~s~l~fw~p~ 303 (311)
T KOG1446|consen 251 SDDGTIHVWNLETGK----------KVAVLRGPNGGPVSCVRFNP--RYAMFVS--ASSNLVFWLPD 303 (311)
T ss_pred cCCCcEEEEEcCCCc----------EeeEecCCCCCCccccccCC--ceeeeee--cCceEEEEecc
Confidence 999999999998887 5656656 678899999998 4444444 46678888654
No 103
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6.5e-25 Score=181.04 Aligned_cols=276 Identities=15% Similarity=0.167 Sum_probs=206.8
Q ss_pred ceEEEEEccCCCceEEEEeeeec-CCceeEEEeeCCcccCCCCCccEEEEeeC-CCcEEEEecCCCcccceeecccccce
Q 048511 6 NKIHLYRGQRTGKFVRACELKGH-TDWIRSLDFSLPVCTSGEAISILLVSSSQ-DKVIRIWKLALRGSSANTQSTYRKEV 83 (351)
Q Consensus 6 g~i~vw~~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~ 83 (351)
.++.+||+++ | ....++++- ...-.++... +..+++++.. -..|.+|.+....... .....++.+
T Consensus 18 ~~~~~~dl~T-G--t~~~~ykg~~~a~~~sl~~l---------~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v 84 (476)
T KOG0646|consen 18 INCIVWDLRT-G--TSLLQYKGSYLAQAASLTAL---------NNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPV 84 (476)
T ss_pred cceeEEecCC-C--ceeEEecCcccccchhhhhh---------chhheeeecccCccccccccCchhhhh-hhcccccce
Confidence 4599999999 7 445566653 2222222222 2456766643 3478999998765554 233345678
Q ss_pred eeeEeeecCCeEEecCCceeEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEec
Q 048511 84 ISLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQP 155 (351)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 155 (351)
.+++.++.|.+++.|...+.+.+|.. +.+|-..|+|+.|+ .|+.+ |+||+.||.|.+|++
T Consensus 85 ~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs------~dgs~------iiTgskDg~V~vW~l 152 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFS------DDGSH------IITGSKDGAVLVWLL 152 (476)
T ss_pred eeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEe------CCCcE------EEecCCCccEEEEEE
Confidence 89999999999999999999988875 56799999999999 89999 999999999999997
Q ss_pred cCCC--cceEEEEEeccccccccceEEEEEcCC--CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEee
Q 048511 156 EKTT--GIWMNVVTVGELSHSALGFYGGHWSPD--GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWS 231 (351)
Q Consensus 156 ~~~~--~~~~~~~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~s 231 (351)
...- ..-.....+..+..|..+|+.+...+. ..++++++.|.++++||+..+ .++.++. ....+.+++.+
T Consensus 153 ~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-----~LLlti~-fp~si~av~lD 226 (476)
T KOG0646|consen 153 TDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-----VLLLTIT-FPSSIKAVALD 226 (476)
T ss_pred EeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-----eeeEEEe-cCCcceeEEEc
Confidence 6410 000012223334589999999988765 458999999999999999987 3444443 56789999999
Q ss_pred cCCCEEEEEeCCCcEEEEcCCCcccccc------CccceEEecccccccc--ceeEEEEeeeCCCcEEEEecCCCeEEEE
Q 048511 232 RSSDYLLSVSHDQTTRVFAPWKNVASLM------GENSWHEVARPQVHGH--DINCVTIIQGKGNHRFVSGADEKVARVF 303 (351)
Q Consensus 232 p~~~~l~s~~~dg~i~vwd~~~~~~~~~------~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~s~~~dg~v~vw 303 (351)
|.++.++.|+.+|.|.+.++..-..... .......+..+.+|.. .|+|++++. |+.+|++|+.||.|.||
T Consensus 227 pae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~--DgtlLlSGd~dg~VcvW 304 (476)
T KOG0646|consen 227 PAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST--DGTLLLSGDEDGKVCVW 304 (476)
T ss_pred ccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec--CccEEEeeCCCCCEEEE
Confidence 9999999999999999998865442111 0112234556678877 899999999 99999999999999999
Q ss_pred ecC-chhhhcee
Q 048511 304 EAP-LSFLKTLN 314 (351)
Q Consensus 304 ~~~-~~~~~~~~ 314 (351)
|+. .++++++.
T Consensus 305 di~S~Q~iRtl~ 316 (476)
T KOG0646|consen 305 DIYSKQCIRTLQ 316 (476)
T ss_pred ecchHHHHHHHh
Confidence 986 78888877
No 104
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=2.3e-25 Score=195.49 Aligned_cols=284 Identities=17% Similarity=0.157 Sum_probs=217.5
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCcc-EEEEeeCCCcEEEEecCCCcccceeeccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISI-LLVSSSQDKVIRIWKLALRGSSANTQSTY 79 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~~ 79 (351)
.|..+|+|.|+|+.. + +.+.+++.-.+.|++++|. .||. .||+|+..|.+.+||++..+........+
T Consensus 219 iG~~~G~ViifNlK~-d--kil~sFk~d~g~VtslSFr--------tDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah 287 (910)
T KOG1539|consen 219 IGLENGTVIIFNLKF-D--KILMSFKQDWGRVTSLSFR--------TDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH 287 (910)
T ss_pred EeccCceEEEEEccc-C--cEEEEEEccccceeEEEec--------cCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc
Confidence 478899999999999 6 4567777445999999999 5664 67778888999999999888777777666
Q ss_pred ccceeeeEeeecCCeEEecCCceeEEE------------EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC
Q 048511 80 RKEVISLASYIEGPVLVAGSSSYQVSV------------ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD 147 (351)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~------------~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d 147 (351)
...+....|.+...++++++.+...+. .+.-.||..+..|+.|.- ..+.+ +.+++.|
T Consensus 288 ~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~-----~~g~~------ilsa~~D 356 (910)
T KOG1539|consen 288 YGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYG-----SQGHF------ILSAKQD 356 (910)
T ss_pred cCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeec-----cCcEE------EEecccC
Confidence 777888888888888888776655543 345578999999999985 56777 8888888
Q ss_pred CeEEEEeccCCC-----cc---------------------eE--------------------------------------
Q 048511 148 KTMMIWQPEKTT-----GI---------------------WM-------------------------------------- 163 (351)
Q Consensus 148 ~~i~iwd~~~~~-----~~---------------------~~-------------------------------------- 163 (351)
++.+.+++.... ++ .+
T Consensus 357 rt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~ 436 (910)
T KOG1539|consen 357 RTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGR 436 (910)
T ss_pred cchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCccccc
Confidence 888887764300 00 00
Q ss_pred EEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccc---ccccccEEEEEeecCCCEEEEE
Q 048511 164 NVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP---SGHFAAVMDISWSRSSDYLLSV 240 (351)
Q Consensus 164 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~---~~~~~~v~~v~~sp~~~~l~s~ 240 (351)
..+...........+++++.++.|++.+.|...|.|-+|++..+- ....+ ..|.++|++++...-++.++++
T Consensus 437 ~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi-----~r~sf~~~~ah~~~V~gla~D~~n~~~vsa 511 (910)
T KOG1539|consen 437 HVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGI-----HRKSFGDSPAHKGEVTGLAVDGTNRLLVSA 511 (910)
T ss_pred EEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCe-----eecccccCccccCceeEEEecCCCceEEEc
Confidence 000000011123568899999999999999999999999999873 24444 5799999999999888999999
Q ss_pred eCCCcEEEEcCCCcccccc-------------------------------CccceEEeccccccccceeEEEEeeeCCCc
Q 048511 241 SHDQTTRVFAPWKNVASLM-------------------------------GENSWHEVARPQVHGHDINCVTIIQGKGNH 289 (351)
Q Consensus 241 ~~dg~i~vwd~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 289 (351)
+.+|.+.+||......... ...+.+.+..+.+|+..|++++|+| ||+
T Consensus 512 ~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~--Dgr 589 (910)
T KOG1539|consen 512 GADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP--DGR 589 (910)
T ss_pred cCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC--CCc
Confidence 9999999999977652211 1222234556778999999999999 999
Q ss_pred EEEEecCCCeEEEEecC-chhhhce
Q 048511 290 RFVSGADEKVARVFEAP-LSFLKTL 313 (351)
Q Consensus 290 ~l~s~~~dg~v~vw~~~-~~~~~~~ 313 (351)
+|++++.|++||+||++ +.++..+
T Consensus 590 WlisasmD~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 590 WLISASMDSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred EEEEeecCCcEEEEeccCcceeeeE
Confidence 99999999999999987 6665544
No 105
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=3.8e-25 Score=190.54 Aligned_cols=235 Identities=19% Similarity=0.293 Sum_probs=187.3
Q ss_pred eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc-cccceee-eEee-ecCCeE
Q 048511 19 FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST-YRKEVIS-LASY-IEGPVL 95 (351)
Q Consensus 19 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~-~~~~-~~~~~l 95 (351)
++..+.+.+|...|..+++. ++..++++|+||++++|+-...+.+...... +..-+.. +++. .++..+
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~---------~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l 74 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVT---------DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRL 74 (745)
T ss_pred ceeEEEeccCccchheeEec---------CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcce
Confidence 46677899999999999887 3558999999999999998776665432222 1112222 3444 455668
Q ss_pred EecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEE
Q 048511 96 VAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVT 167 (351)
Q Consensus 96 ~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 167 (351)
+.|+.+..+-++. .+.+|...|.|+... .++. +++||.|.++++|.... +...
T Consensus 75 ~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~------~~~~-------~iSgSWD~TakvW~~~~----l~~~-- 135 (745)
T KOG0301|consen 75 VVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIG------EDGT-------LISGSWDSTAKVWRIGE----LVYS-- 135 (745)
T ss_pred EeecccceEEEEecCCCCchhhhhccccceeeeecC------CcCc-------eEecccccceEEecchh----hhcc--
Confidence 8888887775543 588999999999977 3433 89999999999998765 2223
Q ss_pred eccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEE
Q 048511 168 VGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTR 247 (351)
Q Consensus 168 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~ 247 (351)
..+|+..|+.++.-|.+ .+++|+.|.+|++|.-. ++++++.+|...|+.+++-+++. |++++.||.|+
T Consensus 136 ---l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~-------~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir 203 (745)
T KOG0301|consen 136 ---LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG-------TLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIR 203 (745)
T ss_pred ---cCCcchheeeeeecCCC-cEEeccCcceeeeccCC-------chhhhhccchhheeeeEEecCCC-eEeecCCceEE
Confidence 34999999999999987 89999999999999653 45899999999999999998864 78899999999
Q ss_pred EEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 248 VFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 248 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
+|++ ++. .+.++.+|..-+++++..+ +++.++++++|++++||+..
T Consensus 204 ~w~~-~ge----------~l~~~~ghtn~vYsis~~~--~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 204 LWDL-DGE----------VLLEMHGHTNFVYSISMAL--SDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEec-cCc----------eeeeeeccceEEEEEEecC--CCCeEEEecCCceEEEeecC
Confidence 9999 444 5666778999999999777 78999999999999999965
No 106
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=1.1e-25 Score=187.32 Aligned_cols=255 Identities=15% Similarity=0.225 Sum_probs=208.0
Q ss_pred CCceEEEEEccCCCceEEEEeeee--cCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeec-ccc
Q 048511 4 LDNKIHLYRGQRTGKFVRACELKG--HTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQS-TYR 80 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~~~~~~~~~--h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~-~~~ 80 (351)
..|.|+|||+...+...++..+.. ...-|.++... ++|+.|++|+.-.++.|||+........... ...
T Consensus 438 GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~--------pdgrtLivGGeastlsiWDLAapTprikaeltssa 509 (705)
T KOG0639|consen 438 GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLL--------PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSA 509 (705)
T ss_pred CCCeEEEeeccCCCCCCccccccccCcccceeeeEec--------CCCceEEeccccceeeeeeccCCCcchhhhcCCcc
Confidence 367899999987554455555543 35678999999 8999999999999999999987755332222 223
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEE--------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVE--------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI 152 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i 152 (351)
....+++.+||.++.+++..++.|.+| +.++||++.+.||.++ +||.. |.+|+-|++||-
T Consensus 510 paCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis------~dGtk------lWTGGlDntvRc 577 (705)
T KOG0639|consen 510 PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS------KDGTK------LWTGGLDNTVRC 577 (705)
T ss_pred hhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEec------CCCce------eecCCCccceee
Confidence 466788899999999999999888665 4589999999999999 89999 999999999999
Q ss_pred EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511 153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR 232 (351)
Q Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 232 (351)
||+++ +..+... .....|.++-.+|++.++++|-.++.+.|......+ .+.+..|++.|.++.|.+
T Consensus 578 WDlre--grqlqqh------dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~------kyqlhlheScVLSlKFa~ 643 (705)
T KOG0639|consen 578 WDLRE--GRQLQQH------DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE------KYQLHLHESCVLSLKFAY 643 (705)
T ss_pred hhhhh--hhhhhhh------hhhhhheecccCCCccceeeecccCcEEEEecCCcc------ceeecccccEEEEEEecc
Confidence 99998 5433322 235679999999999999999999998887766643 667778999999999999
Q ss_pred CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511 233 SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA 305 (351)
Q Consensus 233 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~ 305 (351)
.|+++++.+.|..+..|....+. .+... .....|.++.++. |+++|++|+.|....||.+
T Consensus 644 cGkwfvStGkDnlLnawrtPyGa----------siFqs-kE~SsVlsCDIS~--ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 644 CGKWFVSTGKDNLLNAWRTPYGA----------SIFQS-KESSSVLSCDISF--DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCceeeecCchhhhhhccCcccc----------ceeec-cccCcceeeeecc--CceEEEecCCCcceEEEEE
Confidence 99999999999999999998776 23222 2345699999998 9999999999999988874
No 107
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.9e-25 Score=183.14 Aligned_cols=233 Identities=17% Similarity=0.256 Sum_probs=176.6
Q ss_pred CCCCCceEEEEEccCCCceEEEEe------------------eeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEE
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACE------------------LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIR 62 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~------------------~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~ 62 (351)
.|+.|..|.|||++-.....+..+ ..+|+++|.+|.|+ . .....||+||.|.+|+
T Consensus 197 iGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n----~---~~~nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 197 IGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN----R---NFRNVLASGSADKTVK 269 (463)
T ss_pred EeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc----c---ccceeEEecCCCceEE
Confidence 377889999999874222222222 23799999999998 2 3457899999999999
Q ss_pred EEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeE
Q 048511 63 IWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSIL 142 (351)
Q Consensus 63 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~ 142 (351)
+||+.++++.. .+..|.+.|.+++|+| ....+ |+
T Consensus 270 lWD~~~g~p~~-----------------------------------s~~~~~k~Vq~l~wh~-----~~p~~------LL 303 (463)
T KOG0270|consen 270 LWDVDTGKPKS-----------------------------------SITHHGKKVQTLEWHP-----YEPSV------LL 303 (463)
T ss_pred EEEcCCCCcce-----------------------------------ehhhcCCceeEEEecC-----CCceE------EE
Confidence 99999987653 3456899999999997 55667 99
Q ss_pred EeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCC-CEEEEEeeCCeEEEEEcccCcccCcccccccccc
Q 048511 143 SASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG-RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH 221 (351)
Q Consensus 143 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~ 221 (351)
+|+.|++|.+.|+|.. ...-...+ ..+.|-.++|+|.. ..++++..||+|+-+|+|... +++.++++|
T Consensus 304 sGs~D~~V~l~D~R~~-~~s~~~wk------~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~----~~vwt~~AH 372 (463)
T KOG0270|consen 304 SGSYDGTVALKDCRDP-SNSGKEWK------FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG----KPVWTLKAH 372 (463)
T ss_pred eccccceEEeeeccCc-cccCceEE------eccceEEEEecCCCceeEEEecCCceEEeeecCCCC----CceeEEEec
Confidence 9999999999999952 11112222 34568899999965 467777889999999999875 789999999
Q ss_pred cccEEEEEeecCC-CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeE
Q 048511 222 FAAVMDISWSRSS-DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVA 300 (351)
Q Consensus 222 ~~~v~~v~~sp~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v 300 (351)
.+.|.++++++.- .+++|++.|+.|++|++...... .+......-+...|+++.| ....+++.|+..+.+
T Consensus 373 d~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~--------~v~~~~~~~~rl~c~~~~~-~~a~~la~GG~k~~~ 443 (463)
T KOG0270|consen 373 DDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK--------SVKEHSFKLGRLHCFALDP-DVAFTLAFGGEKAVL 443 (463)
T ss_pred cCCcceEEecCCCCcceeeccccceEEEEeecCCCCc--------ccccccccccceeecccCC-CcceEEEecCccceE
Confidence 9999999999854 46889999999999999765421 1111001112267888888 346788999999999
Q ss_pred EEEecC
Q 048511 301 RVFEAP 306 (351)
Q Consensus 301 ~vw~~~ 306 (351)
+|||+.
T Consensus 444 ~vwd~~ 449 (463)
T KOG0270|consen 444 RVWDIF 449 (463)
T ss_pred EEeecc
Confidence 999965
No 108
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=3.2e-24 Score=184.88 Aligned_cols=275 Identities=23% Similarity=0.326 Sum_probs=208.0
Q ss_pred CCCCCceEEEEEccCCC------------------ceEEE----------EeeeecCCceeEEEeeCCcccCCCCCccEE
Q 048511 1 MGGLDNKIHLYRGQRTG------------------KFVRA----------CELKGHTDWIRSLDFSLPVCTSGEAISILL 52 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~------------------~~~~~----------~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l 52 (351)
++|+|..||||.+...+ .+... ..+.||++.|.++.|+ |.+..|
T Consensus 211 S~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~--------p~~~~L 282 (764)
T KOG1063|consen 211 SSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWH--------PEGLDL 282 (764)
T ss_pred ecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEc--------cchhhh
Confidence 58999999999876411 01111 1235999999999999 778899
Q ss_pred EEeeCCCcEEEEecCCCccc--ceeec----ccccceeeeEeeecCCeEEecCCceeEEEEE-----------ecccccc
Q 048511 53 VSSSQDKVIRIWKLALRGSS--ANTQS----TYRKEVISLASYIEGPVLVAGSSSYQVSVES-----------LLIGHED 115 (351)
Q Consensus 53 ~t~~~dg~i~iwd~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----------~~~~h~~ 115 (351)
++++.|.++.+|...+..-+ ..... +.........|++++..+++.+..+...+|+ ...||.+
T Consensus 283 LSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~ 362 (764)
T KOG1063|consen 283 LSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVD 362 (764)
T ss_pred eecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccc
Confidence 99999999999998765322 12211 2233467888999999999988888887776 2568999
Q ss_pred ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcce---------------------------------
Q 048511 116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIW--------------------------------- 162 (351)
Q Consensus 116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--------------------------------- 162 (351)
.|.+++|. |.|.+ |++.+.|.+-|++-.-..+..+
T Consensus 363 ~V~dv~W~------psGef------lLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKV 430 (764)
T KOG1063|consen 363 GVKDVDWD------PSGEF------LLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKV 430 (764)
T ss_pred cceeeeec------CCCCE------EEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeeccccee
Confidence 99999999 67778 8888888777766443100000
Q ss_pred EEEEE---------------------------------------------------------------------------
Q 048511 163 MNVVT--------------------------------------------------------------------------- 167 (351)
Q Consensus 163 ~~~~~--------------------------------------------------------------------------- 167 (351)
++.+.
T Consensus 431 lRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq 510 (764)
T KOG1063|consen 431 LRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQ 510 (764)
T ss_pred eeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHH
Confidence 00000
Q ss_pred -------eccccccccceEEEEEcCCCCEEEEEeeC-----CeEEEEEcccCcccCcccccccccccccEEEEEeecCCC
Q 048511 168 -------VGELSHSALGFYGGHWSPDGRSILAHGYG-----GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSD 235 (351)
Q Consensus 168 -------~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 235 (351)
...+-+|...|++++.+|+++++|+++.. ..|++|+..+ |..++.+.+|.-.|+.++||||++
T Consensus 511 ~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~-----W~~~~~L~~HsLTVT~l~FSpdg~ 585 (764)
T KOG1063|consen 511 QNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN-----WLQVQELEGHSLTVTRLAFSPDGR 585 (764)
T ss_pred HhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc-----hhhhheecccceEEEEEEECCCCc
Confidence 00034788889999999999999999865 3599998876 355778999999999999999999
Q ss_pred EEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCch
Q 048511 236 YLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLS 308 (351)
Q Consensus 236 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 308 (351)
+|++.+.|+++.+|......... ......+.|..-|++++|+| ++.+|+|+|.|..|+||..+..
T Consensus 586 ~LLsvsRDRt~sl~~~~~~~~~e------~~fa~~k~HtRIIWdcsW~p--de~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 586 YLLSVSRDRTVSLYEVQEDIKDE------FRFACLKAHTRIIWDCSWSP--DEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EEEEeecCceEEeeeeecccchh------hhhccccccceEEEEcccCc--ccceeEEecCCceEEEEeccCc
Confidence 99999999999999986554211 12444678999999999999 8999999999999999998733
No 109
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5e-26 Score=198.17 Aligned_cols=215 Identities=15% Similarity=0.255 Sum_probs=168.2
Q ss_pred eeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEecc
Q 048511 32 IRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLI 111 (351)
Q Consensus 32 V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 111 (351)
+..|.|. . -..++|||++..|.|.+||+....... ....+.
T Consensus 90 ~~DVkW~----~---~~~NlIAT~s~nG~i~vWdlnk~~rnk--------------------------------~l~~f~ 130 (839)
T KOG0269|consen 90 AADVKWG----Q---LYSNLIATCSTNGVISVWDLNKSIRNK--------------------------------LLTVFN 130 (839)
T ss_pred hhhcccc----c---chhhhheeecCCCcEEEEecCccccch--------------------------------hhhHhh
Confidence 4556676 2 467899999999999999998732111 112457
Q ss_pred ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC-CCCEE
Q 048511 112 GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP-DGRSI 190 (351)
Q Consensus 112 ~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l 190 (351)
.|+..++++.|++ ...++ |++||.||+|++||++. .....++. .....|+.+.|+| .+.++
T Consensus 131 EH~Rs~~~ldfh~-----tep~i------liSGSQDg~vK~~DlR~--~~S~~t~~-----~nSESiRDV~fsp~~~~~F 192 (839)
T KOG0269|consen 131 EHERSANKLDFHS-----TEPNI------LISGSQDGTVKCWDLRS--KKSKSTFR-----SNSESIRDVKFSPGYGNKF 192 (839)
T ss_pred hhccceeeeeecc-----CCccE------EEecCCCceEEEEeeec--cccccccc-----ccchhhhceeeccCCCceE
Confidence 7999999999996 34455 99999999999999998 55555554 5677899999999 46788
Q ss_pred EEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccc
Q 048511 191 LAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARP 270 (351)
Q Consensus 191 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 270 (351)
+++...|.+.+||++... ++..++.+|.++|.++.|+|++.+||||+.|+.|+|||+...+. .....+.
T Consensus 193 ~s~~dsG~lqlWDlRqp~----r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-----~~~~tIn-- 261 (839)
T KOG0269|consen 193 ASIHDSGYLQLWDLRQPD----RCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-----KPKHTIN-- 261 (839)
T ss_pred EEecCCceEEEeeccCch----hHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-----cceeEEe--
Confidence 888899999999999875 67889999999999999999999999999999999999986652 1222222
Q ss_pred cccccceeEEEEeeeCCCcEEEEec--CCCeEEEEecCchhh--hceeecc
Q 048511 271 QVHGHDINCVTIIQGKGNHRFVSGA--DEKVARVFEAPLSFL--KTLNHAT 317 (351)
Q Consensus 271 ~~~~~~i~~~~~~~~~~~~~l~s~~--~dg~v~vw~~~~~~~--~~~~~~~ 317 (351)
...+|.++.|-| .....|++++ .|-.|+|||+...++ .++..|.
T Consensus 262 --Tiapv~rVkWRP-~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~ 309 (839)
T KOG0269|consen 262 --TIAPVGRVKWRP-ARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHT 309 (839)
T ss_pred --ecceeeeeeecc-CccchhhhhhccccceEEEEeeccccccceeeeccC
Confidence 346799999999 3356777776 788999999875443 4555554
No 110
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.4e-24 Score=178.82 Aligned_cols=270 Identities=10% Similarity=0.137 Sum_probs=207.0
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCcc-EEEEeeCCCcEEEEecCCCcccce--eec
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISI-LLVSSSQDKVIRIWKLALRGSSAN--TQS 77 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~~~--~~~ 77 (351)
+|+.||+++||.++. ..-..+..+.--.-+|.+..|. ++|. .+++++.-..+..||+.+.+.... ...
T Consensus 230 vaG~d~~lrifqvDG-k~N~~lqS~~l~~fPi~~a~f~--------p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g 300 (514)
T KOG2055|consen 230 VAGLDGTLRIFQVDG-KVNPKLQSIHLEKFPIQKAEFA--------PNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYG 300 (514)
T ss_pred EecCCCcEEEEEecC-ccChhheeeeeccCccceeeec--------CCCceEEEecccceEEEEeeccccccccccCCCC
Confidence 588999999999987 3334555665557799999999 7787 999999999999999987764322 222
Q ss_pred ccccceeeeEeeecCCeEEecCCceeEEEEEeccc-------cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeE
Q 048511 78 TYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIG-------HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTM 150 (351)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i 150 (351)
.....+..+..++++++++..+..+.|.+.....+ -.+.|..+.|+ .+++. |++++.+|.|
T Consensus 301 ~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fs------Sdsk~------l~~~~~~GeV 368 (514)
T KOG2055|consen 301 VEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFS------SDSKE------LLASGGTGEV 368 (514)
T ss_pred cccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEe------cCCcE------EEEEcCCceE
Confidence 22345667888999999999999999987654322 35678999999 78888 9999999999
Q ss_pred EEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCc-ccCcccccccccccccEEEEE
Q 048511 151 MIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVD-IDNWQPQKVPSGHFAAVMDIS 229 (351)
Q Consensus 151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~~~~~v~~v~ 229 (351)
.+||++. ..++..+.. .....-++++.++++.+||+|+..|.|.|||.++.. ....+++..+..-...|+++.
T Consensus 369 ~v~nl~~--~~~~~rf~D----~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~ 442 (514)
T KOG2055|consen 369 YVWNLRQ--NSCLHRFVD----DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQ 442 (514)
T ss_pred EEEecCC--cceEEEEee----cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeee
Confidence 9999999 677777652 112234678888999999999999999999975321 112367778777788999999
Q ss_pred eecCCCEEEEEeC--CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 230 WSRSSDYLLSVSH--DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 230 ~sp~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
|+|+.++||.+|. +..+++-.+.+... ...|-.. ...-+.++|++|+| .+.++|.|.++|.|.+|.+.
T Consensus 443 Fn~d~qiLAiaS~~~knalrLVHvPS~TV----FsNfP~~---n~~vg~vtc~aFSP--~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 443 FNHDAQILAIASRVKKNALRLVHVPSCTV----FSNFPTS---NTKVGHVTCMAFSP--NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eCcchhhhhhhhhccccceEEEeccceee----eccCCCC---CCcccceEEEEecC--CCceEEeecCCCceeeEeec
Confidence 9999999887764 67889888766541 1122222 22223499999999 89999999999999999863
No 111
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=3.1e-25 Score=173.06 Aligned_cols=226 Identities=18% Similarity=0.181 Sum_probs=172.1
Q ss_pred eecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccce--eecccccceeeeEeeecCCeEEecCCcee
Q 048511 26 KGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSAN--TQSTYRKEVISLASYIEGPVLVAGSSSYQ 103 (351)
Q Consensus 26 ~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 103 (351)
.-|.+.|+++... + ..|+++++|+.||.|.+||++....... ....+ . .
T Consensus 40 r~HgGsvNsL~id----~---tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~----~------------------c 90 (397)
T KOG4283|consen 40 RPHGGSVNSLQID----L---TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKH----K------------------C 90 (397)
T ss_pred ccCCCccceeeec----c---ccceEEeecCCCccEEEEEeccccchhhccceehe----e------------------e
Confidence 4688999999998 3 5789999999999999999986542110 00000 0 0
Q ss_pred EEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEE
Q 048511 104 VSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHW 183 (351)
Q Consensus 104 ~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 183 (351)
+.-...-.+|.-.|.++.|.| .|.-+ |.+++.|.++++||..+ .+....+. .+..|++-++
T Consensus 91 ~v~~~h~~~Hky~iss~~WyP-----~DtGm------FtssSFDhtlKVWDtnT--lQ~a~~F~------me~~VYsham 151 (397)
T KOG4283|consen 91 IVAKQHENGHKYAISSAIWYP-----IDTGM------FTSSSFDHTLKVWDTNT--LQEAVDFK------MEGKVYSHAM 151 (397)
T ss_pred eccccCCccceeeeeeeEEee-----ecCce------eecccccceEEEeeccc--ceeeEEee------cCceeehhhc
Confidence 000112356888999999998 67777 99999999999999998 55555554 3456888899
Q ss_pred cCC---CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCE-EEEEeCCCcEEEEcCCCcccccc
Q 048511 184 SPD---GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDY-LLSVSHDQTTRVFAPWKNVASLM 259 (351)
Q Consensus 184 ~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~-l~s~~~dg~i~vwd~~~~~~~~~ 259 (351)
+|- ..++|+|..+-.|++.|+..+ ..-.++.+|...|.+|.|+|...+ |++|+.||.|++||++.......
T Consensus 152 Sp~a~sHcLiA~gtr~~~VrLCDi~SG-----s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~ 226 (397)
T KOG4283|consen 152 SPMAMSHCLIAAGTRDVQVRLCDIASG-----SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFR 226 (397)
T ss_pred ChhhhcceEEEEecCCCcEEEEeccCC-----cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeE
Confidence 884 347788888899999999998 668899999999999999998777 68999999999999987632111
Q ss_pred ---Cc--cceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 260 ---GE--NSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 260 ---~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
.. +....+..-..|.+.+..++|.. ++.++++.+.|..+++|+..
T Consensus 227 ~lD~hn~k~~p~~~~n~ah~gkvngla~tS--d~~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 227 VLDQHNTKRPPILKTNTAHYGKVNGLAWTS--DARYLASCGTDDRIRVWNME 276 (397)
T ss_pred EeecccCccCccccccccccceeeeeeecc--cchhhhhccCccceEEeecc
Confidence 00 00011122346788899999999 99999999999999999975
No 112
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=6.9e-24 Score=166.46 Aligned_cols=250 Identities=15% Similarity=0.143 Sum_probs=183.8
Q ss_pred CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEE
Q 048511 29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES 108 (351)
Q Consensus 29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 108 (351)
.+.|..|.|+ +.+..|+.+++||++++||+.......... +..+++.++|.+ ...+++|+.++.++...
T Consensus 13 ~d~IS~v~f~--------~~~~~LLvssWDgslrlYdv~~~~l~~~~~--~~~plL~c~F~d-~~~~~~G~~dg~vr~~D 81 (323)
T KOG1036|consen 13 EDGISSVKFS--------PSSSDLLVSSWDGSLRLYDVPANSLKLKFK--HGAPLLDCAFAD-ESTIVTGGLDGQVRRYD 81 (323)
T ss_pred hhceeeEEEc--------CcCCcEEEEeccCcEEEEeccchhhhhhee--cCCceeeeeccC-CceEEEeccCceEEEEE
Confidence 5689999999 677788888899999999998875544443 345788888877 55677788888887665
Q ss_pred e-------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEE
Q 048511 109 L-------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGG 181 (351)
Q Consensus 109 ~-------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i 181 (351)
. +..|..+|.|+.++ +.... +++|++|++|++||.+. ......+. ....|+++
T Consensus 82 ln~~~~~~igth~~~i~ci~~~------~~~~~------vIsgsWD~~ik~wD~R~--~~~~~~~d------~~kkVy~~ 141 (323)
T KOG1036|consen 82 LNTGNEDQIGTHDEGIRCIEYS------YEVGC------VISGSWDKTIKFWDPRN--KVVVGTFD------QGKKVYCM 141 (323)
T ss_pred ecCCcceeeccCCCceEEEEee------ccCCe------EEEcccCccEEEEeccc--cccccccc------cCceEEEE
Confidence 3 56699999999999 44455 99999999999999996 33222222 23367777
Q ss_pred EEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCc
Q 048511 182 HWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGE 261 (351)
Q Consensus 182 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 261 (351)
.. .++.|++|+.+..+.+||+++..... ...-..-...+++|++-|++.-+++++-||.|.+=.+..........
T Consensus 142 ~v--~g~~LvVg~~~r~v~iyDLRn~~~~~---q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skk 216 (323)
T KOG1036|consen 142 DV--SGNRLVVGTSDRKVLIYDLRNLDEPF---QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKK 216 (323)
T ss_pred ec--cCCEEEEeecCceEEEEEcccccchh---hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhc
Confidence 76 57789999999999999999875311 11112234578999999988888999999999987766553222111
Q ss_pred cceEEecccc---ccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeec
Q 048511 262 NSWHEVARPQ---VHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHA 316 (351)
Q Consensus 262 ~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~ 316 (351)
-.+++..... ....+|++++|+| -.+.||||+.||.|.+||+. .+.+..|..+
T Consensus 217 yaFkCHr~~~~~~~~~yPVNai~Fhp--~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~ 273 (323)
T KOG1036|consen 217 YAFKCHRLSEKDTEIIYPVNAIAFHP--IHGTFATGGSDGIVNIWDLFNRKRLKQLAKY 273 (323)
T ss_pred eeEEeeecccCCceEEEEeceeEecc--ccceEEecCCCceEEEccCcchhhhhhccCC
Confidence 2233322221 1235699999999 68899999999999999976 6667777666
No 113
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=3.9e-24 Score=174.98 Aligned_cols=236 Identities=18% Similarity=0.202 Sum_probs=197.3
Q ss_pred CceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEe
Q 048511 30 DWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL 109 (351)
Q Consensus 30 ~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 109 (351)
..|+++... +....++||+.|..+.++|...++.+. ...++...+..+.++++...++.+..+..+++|..
T Consensus 220 pgi~ald~~--------~s~~~ilTGG~d~~av~~d~~s~q~l~-~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~ 290 (506)
T KOG0289|consen 220 PGITALDII--------PSSSKILTGGEDKTAVLFDKPSNQILA-TLKGHTKKITSVKFHKDLDTVITASADEIIRVWSV 290 (506)
T ss_pred CCeeEEeec--------CCCCcceecCCCCceEEEecchhhhhh-hccCcceEEEEEEeccchhheeecCCcceEEeecc
Confidence 367888887 556799999999999999998766554 44556778899999999999999999998887754
Q ss_pred --------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEE
Q 048511 110 --------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGG 181 (351)
Q Consensus 110 --------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i 181 (351)
...|..+|+.+..+ +.|.+ |++++.|++..+.|+++ +..+..... ......++++
T Consensus 291 ~~~s~~~~~~~h~~~V~~ls~h------~tgeY------llsAs~d~~w~Fsd~~~--g~~lt~vs~---~~s~v~~ts~ 353 (506)
T KOG0289|consen 291 PLSSEPTSSRPHEEPVTGLSLH------PTGEY------LLSASNDGTWAFSDISS--GSQLTVVSD---ETSDVEYTSA 353 (506)
T ss_pred ccccCccccccccccceeeeec------cCCcE------EEEecCCceEEEEEccC--CcEEEEEee---ccccceeEEe
Confidence 56799999999999 78899 99999999999999999 666655441 1234568999
Q ss_pred EEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCc
Q 048511 182 HWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGE 261 (351)
Q Consensus 182 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 261 (351)
+|+|||..+.+|..|+.|++||+... ..+..|.+|.++|..++|+.+|-+|++++.|+.|++||++..+
T Consensus 354 ~fHpDgLifgtgt~d~~vkiwdlks~-----~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~------ 422 (506)
T KOG0289|consen 354 AFHPDGLIFGTGTPDGVVKIWDLKSQ-----TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK------ 422 (506)
T ss_pred eEcCCceEEeccCCCceEEEEEcCCc-----cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc------
Confidence 99999999999999999999999887 4588999999999999999999999999999999999998876
Q ss_pred cceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511 262 NSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 262 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 307 (351)
.++.+... ....+.++.|.+ .|.+|+.++.|=.|++++-..
T Consensus 423 -n~kt~~l~--~~~~v~s~~fD~--SGt~L~~~g~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 423 -NFKTIQLD--EKKEVNSLSFDQ--SGTYLGIAGSDLQVYICKKKT 463 (506)
T ss_pred -ccceeecc--ccccceeEEEcC--CCCeEEeecceeEEEEEeccc
Confidence 22233221 223689999998 899999999998888888543
No 114
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.6e-26 Score=199.81 Aligned_cols=217 Identities=22% Similarity=0.256 Sum_probs=187.9
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.|-.+-+|.... +..+..|.+|..+|-+|.|+ ....+|++|+.+|+|++||++....+
T Consensus 45 ~Gg~~~k~~L~~i~k---p~~i~S~~~hespIeSl~f~--------~~E~LlaagsasgtiK~wDleeAk~v-------- 105 (825)
T KOG0267|consen 45 TGGEDEKVNLWAIGK---PNAITSLTGHESPIESLTFD--------TSERLLAAGSASGTIKVWDLEEAKIV-------- 105 (825)
T ss_pred cCCCceeeccccccC---CchhheeeccCCcceeeecC--------cchhhhcccccCCceeeeehhhhhhh--------
Confidence 477788888888765 34556799999999999999 88999999999999999999866433
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG 160 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 160 (351)
+++.+|...+.++.|+ |-+.+ +++|+.|+.+++||.+. .
T Consensus 106 ---------------------------rtLtgh~~~~~sv~f~------P~~~~------~a~gStdtd~~iwD~Rk--~ 144 (825)
T KOG0267|consen 106 ---------------------------RTLTGHLLNITSVDFH------PYGEF------FASGSTDTDLKIWDIRK--K 144 (825)
T ss_pred ---------------------------hhhhccccCcceeeec------cceEE------eccccccccceehhhhc--c
Confidence 4678999999999999 78888 99999999999999997 5
Q ss_pred ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE
Q 048511 161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV 240 (351)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~ 240 (351)
.+...+. +|...+..+.|+|+|++++.++.|..++|||+..+ +....|..|++.+..+.|+|..-++++|
T Consensus 145 Gc~~~~~-----s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag-----k~~~ef~~~e~~v~sle~hp~e~Lla~G 214 (825)
T KOG0267|consen 145 GCSHTYK-----SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG-----KLSKEFKSHEGKVQSLEFHPLEVLLAPG 214 (825)
T ss_pred Cceeeec-----CCcceeEEEeecCCCceeeccCCcceeeeeccccc-----ccccccccccccccccccCchhhhhccC
Confidence 6666665 68888999999999999999999999999999887 5688999999999999999998899999
Q ss_pred eCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCe
Q 048511 241 SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKV 299 (351)
Q Consensus 241 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~ 299 (351)
+.|+++++||+++.. .+.........|.+.+|++ ++..+++|..+..
T Consensus 215 s~d~tv~f~dletfe----------~I~s~~~~~~~v~~~~fn~--~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 215 SSDRTVRFWDLETFE----------VISSGKPETDGVRSLAFNP--DGKIVLSGEQISL 261 (825)
T ss_pred CCCceeeeeccceeE----------EeeccCCccCCceeeeecC--CceeeecCchhhh
Confidence 999999999997654 5665555567799999999 8988888876644
No 115
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=8.2e-25 Score=175.94 Aligned_cols=239 Identities=16% Similarity=0.222 Sum_probs=179.0
Q ss_pred CCCceEEEEEccC-------------CCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCC
Q 048511 3 GLDNKIHLYRGQR-------------TGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALR 69 (351)
Q Consensus 3 ~~dg~i~vw~~~~-------------~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~ 69 (351)
+..|.|+||++.. ..+..++.++.+|.+.=++|+|+ | .....|+||..-+.|++|...++
T Consensus 172 se~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWS----p---~~~g~LlsGDc~~~I~lw~~~~g 244 (440)
T KOG0302|consen 172 SENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWS----P---IKTGRLLSGDCVKGIHLWEPSTG 244 (440)
T ss_pred cccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecc----c---ccccccccCccccceEeeeeccC
Confidence 5679999999763 13456788999999999999999 3 22346888888889999999886
Q ss_pred cccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCe
Q 048511 70 GSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT 149 (351)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~ 149 (351)
...... ..+.+|+..|..|+|+| ....+ |++||.||+
T Consensus 245 ~W~vd~--------------------------------~Pf~gH~~SVEDLqWSp-----tE~~v------faScS~Dgs 281 (440)
T KOG0302|consen 245 SWKVDQ--------------------------------RPFTGHTKSVEDLQWSP-----TEDGV------FASCSCDGS 281 (440)
T ss_pred ceeecC--------------------------------ccccccccchhhhccCC-----ccCce------EEeeecCce
Confidence 543222 23567999999999998 45566 999999999
Q ss_pred EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEE
Q 048511 150 MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDIS 229 (351)
Q Consensus 150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~ 229 (351)
|+|||+|.......... ..|...|.-|.|+....+|++|+.||+++|||++.-+.. +++..++.|..+|++|.
T Consensus 282 IrIWDiRs~~~~~~~~~-----kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~--~pVA~fk~Hk~pItsie 354 (440)
T KOG0302|consen 282 IRIWDIRSGPKKAAVST-----KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG--QPVATFKYHKAPITSIE 354 (440)
T ss_pred EEEEEecCCCccceeEe-----eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC--CcceeEEeccCCeeEEE
Confidence 99999998422222222 378889999999999889999999999999999875543 78899999999999999
Q ss_pred eecCC-CEEEEEeCCCcEEEEcCCCcccccc----CccceEEe--cccccc--ccceeEEEEeeeCCCcEEEEecCCCe
Q 048511 230 WSRSS-DYLLSVSHDQTTRVFAPWKNVASLM----GENSWHEV--ARPQVH--GHDINCVTIIQGKGNHRFVSGADEKV 299 (351)
Q Consensus 230 ~sp~~-~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~~--~~~~~~--~~~i~~~~~~~~~~~~~l~s~~~dg~ 299 (351)
|+|.. ..|++++.|.+|.|||+........ ....+..+ ..+..| ...+..+.|++ .-..+|++.+-||.
T Consensus 355 W~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~-QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 355 WHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHR-QIPGLLVSTAIDGF 432 (440)
T ss_pred eccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheecc-CCCCeEEEecccce
Confidence 99954 5678888999999999865442110 00010000 011234 23488899998 44678888888886
No 116
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=6.3e-24 Score=189.25 Aligned_cols=208 Identities=17% Similarity=0.225 Sum_probs=153.0
Q ss_pred CCCCCceEEEEEccCCCce-----EEEEeeeecCCceeEEEeeCCcccCCCCCcc-EEEEeeCCCcEEEEecCCCcccce
Q 048511 1 MGGLDNKIHLYRGQRTGKF-----VRACELKGHTDWIRSLDFSLPVCTSGEAISI-LLVSSSQDKVIRIWKLALRGSSAN 74 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~-----~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~~~ 74 (351)
+|+.||+|+|||+...+.. .++..+.+|...|.+++|+ |++. +|++++.|++|++||+.+++....
T Consensus 92 SgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~--------P~g~~iLaSgS~DgtIrIWDl~tg~~~~~ 163 (568)
T PTZ00420 92 SGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWN--------PMNYYIMCSSGFDSFVNIWDIENEKRAFQ 163 (568)
T ss_pred EEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEEC--------CCCCeEEEEEeCCCeEEEEECCCCcEEEE
Confidence 5789999999999762211 2345788999999999999 6665 467999999999999987653311
Q ss_pred eecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEe
Q 048511 75 TQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQ 154 (351)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd 154 (351)
+. |...|.+++|+ ++|.+ |++++.|+.|+|||
T Consensus 164 -----------------------------------i~-~~~~V~Slsws------pdG~l------Lat~s~D~~IrIwD 195 (568)
T PTZ00420 164 -----------------------------------IN-MPKKLSSLKWN------IKGNL------LSGTCVGKHMHIID 195 (568)
T ss_pred -----------------------------------Ee-cCCcEEEEEEC------CCCCE------EEEEecCCEEEEEE
Confidence 12 45679999999 78999 99999999999999
Q ss_pred ccCCCcceEEEEEeccccccccce-----EEEEEcCCCCEEEEEeeCC----eEEEEEcccCcccCccccccc--ccccc
Q 048511 155 PEKTTGIWMNVVTVGELSHSALGF-----YGGHWSPDGRSILAHGYGG----AFHLWRNVGVDIDNWQPQKVP--SGHFA 223 (351)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~i-----~~i~~~~~~~~l~~~~~dg----~i~~~d~~~~~~~~~~~~~~~--~~~~~ 223 (351)
+++ +..+..+. .|...+ ....|++++.+|++++.|+ .|+|||++... .++..+ ..+.+
T Consensus 196 ~Rs--g~~i~tl~-----gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~----~pl~~~~ld~~~~ 264 (568)
T PTZ00420 196 PRK--QEIASSFH-----IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT----SALVTMSIDNASA 264 (568)
T ss_pred CCC--CcEEEEEe-----cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC----CceEEEEecCCcc
Confidence 998 76666655 555443 2334568999999988774 79999998642 334433 23334
Q ss_pred cEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEee
Q 048511 224 AVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQ 284 (351)
Q Consensus 224 ~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 284 (351)
.+......+++.++++|+.|+.|++|++..+. ...+..+. +..+..+++|.|
T Consensus 265 ~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~--------~~~l~~~~-s~~p~~g~~f~P 316 (568)
T PTZ00420 265 PLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS--------IRKVNEYK-SCSPFRSFGFLP 316 (568)
T ss_pred ceEEeeeCCCCCEEEEEECCCeEEEEEccCCc--------EEeecccc-cCCCccceEEcc
Confidence 44444445568889999999999999997654 22343332 556788899998
No 117
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=8.3e-25 Score=180.39 Aligned_cols=218 Identities=18% Similarity=0.217 Sum_probs=173.8
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK 81 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~ 81 (351)
|+..|.|++|.+.+ | ..+..+.+|...|+|+.|+ .|+.+|+|||.||.|.+|.+..-
T Consensus 99 g~i~g~lYlWelss-G--~LL~v~~aHYQ~ITcL~fs--------~dgs~iiTgskDg~V~vW~l~~l------------ 155 (476)
T KOG0646|consen 99 GTISGNLYLWELSS-G--ILLNVLSAHYQSITCLKFS--------DDGSHIITGSKDGAVLVWLLTDL------------ 155 (476)
T ss_pred ecccCcEEEEEecc-c--cHHHHHHhhccceeEEEEe--------CCCcEEEecCCCccEEEEEEEee------------
Confidence 34788999999999 8 4567789999999999999 89999999999999999998532
Q ss_pred ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcc
Q 048511 82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGI 161 (351)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 161 (351)
+.+..+........+..|+-+|+++...+-. .... |+|+|.|.++++||+.. +.
T Consensus 156 --------------v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg----~~~r------l~TaS~D~t~k~wdlS~--g~ 209 (476)
T KOG0646|consen 156 --------------VSADNDHSVKPLHIFSDHTLSITDLQIGSGG----TNAR------LYTASEDRTIKLWDLSL--GV 209 (476)
T ss_pred --------------cccccCCCccceeeeccCcceeEEEEecCCC----ccce------EEEecCCceEEEEEecc--ce
Confidence 1122233345567788999999999988422 1223 99999999999999999 77
Q ss_pred eEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcc-----------cCcccccccccccc--cEEEE
Q 048511 162 WMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDI-----------DNWQPQKVPSGHFA--AVMDI 228 (351)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~-----------~~~~~~~~~~~~~~--~v~~v 228 (351)
.+.++. ....+.+++.+|.++.+++|+.+|.|.+.++..... .....+..+.+|.+ .|+++
T Consensus 210 LLlti~------fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcL 283 (476)
T KOG0646|consen 210 LLLTIT------FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCL 283 (476)
T ss_pred eeEEEe------cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEE
Confidence 776664 456799999999999999999999999998854321 01123445678887 99999
Q ss_pred EeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEee
Q 048511 229 SWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQ 284 (351)
Q Consensus 229 ~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 284 (351)
+.+-||..|++|+.||.|+|||+.+.+ .+.++....++|+.+.+.|
T Consensus 284 ais~DgtlLlSGd~dg~VcvWdi~S~Q----------~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 284 AISTDGTLLLSGDEDGKVCVWDIYSKQ----------CIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred EEecCccEEEeeCCCCCEEEEecchHH----------HHHHHhhhccccceeEeec
Confidence 999999999999999999999998877 4555444556788888865
No 118
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=8e-24 Score=174.34 Aligned_cols=259 Identities=18% Similarity=0.143 Sum_probs=200.4
Q ss_pred CCCCCceEEEEEccCCCceE---------------EEEee-eecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEE
Q 048511 1 MGGLDNKIHLYRGQRTGKFV---------------RACEL-KGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIW 64 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~---------------~~~~~-~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iw 64 (351)
+++.||+|.-|++.+ ++-. +...- ++|...|.+++.+ +++++||||+.|..|.||
T Consensus 159 sask~g~i~kw~v~t-gk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS--------~Dgkylatgg~d~~v~Iw 229 (479)
T KOG0299|consen 159 SASKDGTILKWDVLT-GKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVS--------SDGKYLATGGRDRHVQIW 229 (479)
T ss_pred ecCCCcceeeeehhc-CcccccccccchhhhhccCCCCcccccccceeEEEEEc--------CCCcEEEecCCCceEEEe
Confidence 468899999999887 4311 00011 3789999999999 899999999999999999
Q ss_pred ecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccC
Q 048511 65 KLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQ 136 (351)
Q Consensus 65 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~ 136 (351)
+..+.+.+.. ...+...+.+++|......+++++.+..+++|. ++.+|.+.|..|... ...+.
T Consensus 230 ~~~t~ehv~~-~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL------~reR~-- 300 (479)
T KOG0299|consen 230 DCDTLEHVKV-FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDAL------SRERC-- 300 (479)
T ss_pred cCcccchhhc-ccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechh------cccce--
Confidence 9999877665 455678899999999999999999999998876 478999999999988 55665
Q ss_pred CCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccc
Q 048511 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQK 216 (351)
Q Consensus 137 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 216 (351)
+-+|+.|+++++|++.. .. ...+. ++...+-|++|-. ..++++|+.+|.|.+|++...+ ++.
T Consensus 301 ----vtVGgrDrT~rlwKi~e--es-qlifr-----g~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKk-----plf 362 (479)
T KOG0299|consen 301 ----VTVGGRDRTVRLWKIPE--ES-QLIFR-----GGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKK-----PLF 362 (479)
T ss_pred ----EEeccccceeEEEeccc--cc-eeeee-----CCCCCeeeEEEec-ccceeeccCCceEEEeeecccC-----cee
Confidence 66667999999999965 22 22233 6777899999864 4679999999999999997763 232
Q ss_pred ccc------------cccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEee
Q 048511 217 VPS------------GHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQ 284 (351)
Q Consensus 217 ~~~------------~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 284 (351)
+.. .+..+|++++..|...++++|+.+|.|++|-+..+- +.+..+..+. -.+-|+.++|++
T Consensus 363 ~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~------r~i~~l~~ls-~~GfVNsl~f~~ 435 (479)
T KOG0299|consen 363 TSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL------RAINLLYSLS-LVGFVNSLAFSN 435 (479)
T ss_pred EeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCc------cccceeeecc-cccEEEEEEEcc
Confidence 211 123489999999999999999999999999998874 2344555554 345699999998
Q ss_pred eCCCcE-EEEecCCCeEEEEe
Q 048511 285 GKGNHR-FVSGADEKVARVFE 304 (351)
Q Consensus 285 ~~~~~~-l~s~~~dg~v~vw~ 304 (351)
++.+ ++..+..-.+--|-
T Consensus 436 --sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 436 --SGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred --CCCEEEEecccccccceee
Confidence 7774 45555555555554
No 119
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=6.9e-25 Score=176.37 Aligned_cols=232 Identities=18% Similarity=0.300 Sum_probs=177.5
Q ss_pred eeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCcee
Q 048511 24 ELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQ 103 (351)
Q Consensus 24 ~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 103 (351)
....|.+.|+.+.-. +- .+..+.++=+..|.|.||++...-....... ... .+..
T Consensus 146 ~~i~h~g~~NRvr~~----~~--~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~------~~~-------------~~s~ 200 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVS----RL--GNEVLCASWSENGRVQVWDLAPHLNALSEPG------LEV-------------KDSE 200 (440)
T ss_pred cccccccccceeeec----cc--CCcceeeeecccCcEEEEEchhhhhhhcCcc------ccc-------------cccc
Confidence 445788888888877 22 3456777778999999999864322110000 000 0012
Q ss_pred EEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEE
Q 048511 104 VSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHW 183 (351)
Q Consensus 104 ~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 183 (351)
.+.+.++.+|...=+.|+|+|. ..| . |++|.--+.|++|...+ +.+..... .+.+|+..|-.++|
T Consensus 201 ~~Pl~t~~ghk~EGy~LdWSp~----~~g-~------LlsGDc~~~I~lw~~~~--g~W~vd~~--Pf~gH~~SVEDLqW 265 (440)
T KOG0302|consen 201 FRPLFTFNGHKGEGYGLDWSPI----KTG-R------LLSGDCVKGIHLWEPST--GSWKVDQR--PFTGHTKSVEDLQW 265 (440)
T ss_pred cCceEEecccCccceeeecccc----ccc-c------cccCccccceEeeeecc--CceeecCc--cccccccchhhhcc
Confidence 2344567889999999999973 233 3 88888889999999998 76654322 23469999999999
Q ss_pred cCCC-CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCcc
Q 048511 184 SPDG-RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGEN 262 (351)
Q Consensus 184 ~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 262 (351)
+|.. ..|++|+.||+|+|||++.+.. +.....++|.+.|+-|.|+....+||+|+.||+++|||++.-+..
T Consensus 266 SptE~~vfaScS~DgsIrIWDiRs~~~---~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~----- 337 (440)
T KOG0302|consen 266 SPTEDGVFASCSCDGSIRIWDIRSGPK---KAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG----- 337 (440)
T ss_pred CCccCceEEeeecCceEEEEEecCCCc---cceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC-----
Confidence 9965 5889999999999999998743 233344889999999999998889999999999999999987632
Q ss_pred ceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 263 SWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 263 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
+++..+..|..+|+++.|+| .+...|+++|.|..|.+||+.
T Consensus 338 --~pVA~fk~Hk~pItsieW~p-~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 338 --QPVATFKYHKAPITSIEWHP-HEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred --CcceeEEeccCCeeEEEecc-ccCceEEeccCCCcEEEEEee
Confidence 47888999999999999999 457788999999999999976
No 120
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.5e-24 Score=186.04 Aligned_cols=217 Identities=19% Similarity=0.317 Sum_probs=187.4
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeee-cCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKG-HTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTY 79 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~ 79 (351)
+|..+|.|.|||... . ..+..+.+ |...|-+++|. +..+.+|+.|+.|..+|++..+........+
T Consensus 234 vG~~~g~v~iwD~~~-~--k~~~~~~~~h~~rvg~laW~----------~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H 300 (484)
T KOG0305|consen 234 VGTSDGTVQIWDVKE-Q--KKTRTLRGSHASRVGSLAWN----------SSVLSSGSRDGKILNHDVRISQHVVSTLQGH 300 (484)
T ss_pred EeecCCeEEEEehhh-c--cccccccCCcCceeEEEecc----------CceEEEecCCCcEEEEEEecchhhhhhhhcc
Confidence 477899999999987 4 45667777 99999999998 6689999999999999999888776656667
Q ss_pred ccceeeeEeeecCCeEEecCCceeEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEee--cCCe
Q 048511 80 RKEVISLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS--MDKT 149 (351)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~--~d~~ 149 (351)
...+..+.|++++..+++|+.+..+.++.. +..|...|..++|+| ....+ ||+|+ .|+.
T Consensus 301 ~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP-----~q~~l------LAsGGGs~D~~ 369 (484)
T KOG0305|consen 301 RQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCP-----WQSGL------LATGGGSADRC 369 (484)
T ss_pred cceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCC-----CccCc------eEEcCCCcccE
Confidence 889999999999999999999988877653 678999999999998 55667 99875 5999
Q ss_pred EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe--eCCeEEEEEcccCcccCcccccccccccccEEE
Q 048511 150 MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG--YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD 227 (351)
Q Consensus 150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~ 227 (351)
|++||..+ +..+..+. ....|.++.|++..+.|+++. .++.|.||+..+. +.+..+.+|...|..
T Consensus 370 i~fwn~~~--g~~i~~vd------tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-----~~~~~l~gH~~RVl~ 436 (484)
T KOG0305|consen 370 IKFWNTNT--GARIDSVD------TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-----KLVAELLGHTSRVLY 436 (484)
T ss_pred EEEEEcCC--CcEecccc------cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-----ceeeeecCCcceeEE
Confidence 99999998 77766653 456899999999988776644 5678999999884 678899999999999
Q ss_pred EEeecCCCEEEEEeCCCcEEEEcCCCc
Q 048511 228 ISWSRSSDYLLSVSHDQTTRVFAPWKN 254 (351)
Q Consensus 228 v~~sp~~~~l~s~~~dg~i~vwd~~~~ 254 (351)
++++|||..+++|+.|.++++|++-..
T Consensus 437 la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 437 LALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEECCCCCEEEEecccCcEEeccccCC
Confidence 999999999999999999999998764
No 121
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=2.9e-23 Score=172.98 Aligned_cols=252 Identities=14% Similarity=0.222 Sum_probs=186.4
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
||..+|.|.||+... .+ ...+..+|.+.|.++... .+|. |+||+.|+.|..|| ..-+..+..+.+..
T Consensus 262 TgDS~G~i~Iw~~~~-~~--~~k~~~aH~ggv~~L~~l--------r~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~ 328 (626)
T KOG2106|consen 262 TGDSGGNILIWSKGT-NR--ISKQVHAHDGGVFSLCML--------RDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQ 328 (626)
T ss_pred eecCCceEEEEeCCC-ce--EEeEeeecCCceEEEEEe--------cCcc-EeecCccceEEecc-ccccccccccCchh
Confidence 688999999999977 53 333444999999999998 6675 55599999999999 33344444443332
Q ss_pred -cceeeeEeeecCCeEEecCCceeE-------EEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511 81 -KEVISLASYIEGPVLVAGSSSYQV-------SVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI 152 (351)
Q Consensus 81 -~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i 152 (351)
..++.++-...+ +.+|.....+ .......+|.+..+.++.+ ++.++ +++++.|+.+++
T Consensus 329 ~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~h------ps~~q------~~T~gqdk~v~l 394 (626)
T KOG2106|consen 329 FGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATH------PSKNQ------LLTCGQDKHVRL 394 (626)
T ss_pred cCCeeEEecCCCc--EEEeeccceEEEeeecCCceEEEEecccceeeEEcC------CChhh------eeeccCcceEEE
Confidence 233333333222 4444433322 1223467899999999999 66777 999999999999
Q ss_pred EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511 153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR 232 (351)
Q Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 232 (351)
|+-.. ..+.+. ...+..|+.|+|.| .++.|...|...+.|.++. ..+..-. ...+++.+.|+|
T Consensus 395 W~~~k--~~wt~~--------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-----~lv~~~~-d~~~ls~v~ysp 457 (626)
T KOG2106|consen 395 WNDHK--LEWTKI--------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQ-----DLVTIHT-DNEQLSVVRYSP 457 (626)
T ss_pred ccCCc--eeEEEE--------ecCceeEeeccCcc-eEEEeeccceEEEEecccc-----eeEEEEe-cCCceEEEEEcC
Confidence 99222 333322 23568899999999 9999999999999999885 2333333 378999999999
Q ss_pred CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 233 SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 233 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
+|.+||.|+.|+.|+||.+..... .+..+.. .++.+|+.+.|++ |+++|.+-+.|-.|..|...
T Consensus 458 ~G~~lAvgs~d~~iyiy~Vs~~g~------~y~r~~k--~~gs~ithLDwS~--Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 458 DGAFLAVGSHDNHIYIYRVSANGR------KYSRVGK--CSGSPITHLDWSS--DSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred CCCEEEEecCCCeEEEEEECCCCc------EEEEeee--ecCceeEEeeecC--CCceEEeccCceEEEEEccc
Confidence 999999999999999999876652 3334443 3448899999999 99999999999999999543
No 122
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=3.8e-24 Score=182.83 Aligned_cols=269 Identities=17% Similarity=0.182 Sum_probs=199.0
Q ss_pred CCCCceEEEEEccCCCceE----EEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccce-ee
Q 048511 2 GGLDNKIHLYRGQRTGKFV----RACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSAN-TQ 76 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~----~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~-~~ 76 (351)
+..||.|.++|... ..+. .+....+|..+|..+.|. +....|++++.|.++++||+........ ..
T Consensus 70 adE~G~i~l~dt~~-~~fr~ee~~lk~~~aH~nAifDl~wa--------pge~~lVsasGDsT~r~Wdvk~s~l~G~~~~ 140 (720)
T KOG0321|consen 70 ADEDGGIILFDTKS-IVFRLEERQLKKPLAHKNAIFDLKWA--------PGESLLVSASGDSTIRPWDVKTSRLVGGRLN 140 (720)
T ss_pred ecCCCceeeecchh-hhcchhhhhhcccccccceeEeeccC--------CCceeEEEccCCceeeeeeeccceeecceee
Confidence 56899999999886 4333 234567899999999999 7678999999999999999998776543 45
Q ss_pred cccccceeeeEeeecCC-eEEecCCceeEEEEEe-----------------------------------ccccccceEE-
Q 048511 77 STYRKEVISLASYIEGP-VLVAGSSSYQVSVESL-----------------------------------LIGHEDWVYS- 119 (351)
Q Consensus 77 ~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~-----------------------------------~~~h~~~v~~- 119 (351)
.++...+.+++|.+.+. ++++|++++.+.+|.. -..+...|.+
T Consensus 141 ~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ss 220 (720)
T KOG0321|consen 141 LGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSS 220 (720)
T ss_pred cccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeee
Confidence 56677888999999665 7778999999877753 1112222333
Q ss_pred --EEecCCCCCCCCCcccCCCceeEEeec-CCeEEEEeccCCCcceEEEEE---ecccccc---ccceEEEEEcCCCCEE
Q 048511 120 --VQWEPPSTAPSDGVSCQQPSSILSASM-DKTMMIWQPEKTTGIWMNVVT---VGELSHS---ALGFYGGHWSPDGRSI 190 (351)
Q Consensus 120 --l~~~p~~~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~---~~~~~~~---~~~i~~i~~~~~~~~l 190 (351)
+.+. .|... ||+++. |+.|+|||++.. ....... ......+ ...+.++..+..|.+|
T Consensus 221 vTvv~f------kDe~t------laSaga~D~~iKVWDLRk~--~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L 286 (720)
T KOG0321|consen 221 VTVVLF------KDEST------LASAGAADSTIKVWDLRKN--YTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYL 286 (720)
T ss_pred eEEEEE------eccce------eeeccCCCcceEEEeeccc--ccccccCCCcccCccCcccceeeeEEEEecCCCCeE
Confidence 3333 46667 999888 999999999972 2211111 1111122 3467888888889999
Q ss_pred EEEeeCCeEEEEEcccCcccCccccccccccccc--EEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEec
Q 048511 191 LAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAA--VMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVA 268 (351)
Q Consensus 191 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~--v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 268 (351)
++.+.|+.|++|++.+-.. .++..+.++... -..-..+|++.++++|+.|...++|.+.+.. ....
T Consensus 287 ~AsCtD~sIy~ynm~s~s~---sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e---------~~~~ 354 (720)
T KOG0321|consen 287 FASCTDNSIYFYNMRSLSI---SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE---------APPA 354 (720)
T ss_pred EEEecCCcEEEEeccccCc---CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc---------CChh
Confidence 9999999999999987653 455555554321 1223568999999999999999999997765 3556
Q ss_pred cccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 269 RPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 269 ~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
.+.+|...|++++|.|+... -++++++|..++||++.
T Consensus 355 ~l~Ght~eVt~V~w~pS~~t-~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 355 LLLGHTREVTTVRWLPSATT-PVATCSDDFRVKIWRLS 391 (720)
T ss_pred hhhCcceEEEEEeeccccCC-CceeeccCcceEEEecc
Confidence 66789999999999995544 56677999999999985
No 123
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=4.1e-25 Score=168.53 Aligned_cols=217 Identities=16% Similarity=0.187 Sum_probs=180.9
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+++.|=+-+|||.-+ | ..++.|+ |..-|.+++|+ .+.++|+||+.+..+||+|++..+........+.
T Consensus 76 saaadftakvw~a~t-g--delhsf~-hkhivk~~af~--------~ds~~lltgg~ekllrvfdln~p~App~E~~ght 143 (334)
T KOG0278|consen 76 SAAADFTAKVWDAVT-G--DELHSFE-HKHIVKAVAFS--------QDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHT 143 (334)
T ss_pred hhcccchhhhhhhhh-h--hhhhhhh-hhheeeeEEec--------ccchhhhccchHHHhhhhhccCCCCCchhhcCCC
Confidence 356777889999888 6 4556665 88899999999 8899999999999999999998877666667778
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEeccc-------cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIG-------HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW 153 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 153 (351)
..+..+.|....+.+++...++.+++|....+ -..+|+++.++ ++|++ ++-...+.|++|
T Consensus 144 g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs------~dG~i-------lTia~gssV~Fw 210 (334)
T KOG0278|consen 144 GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVS------QDGRI-------LTIAYGSSVKFW 210 (334)
T ss_pred CcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeec------cCCCE-------EEEecCceeEEe
Confidence 88999999999999998899999999876443 24568888888 78875 555567789999
Q ss_pred eccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccc-cccccccEEEEEeec
Q 048511 154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKV-PSGHFAAVMDISWSR 232 (351)
Q Consensus 154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~~~~~v~~v~~sp 232 (351)
|..+ -..++.+. ....|.+..++|+...+++|+.|..++.||..+++. +-. .++|.++|.+|.|+|
T Consensus 211 daks--f~~lKs~k------~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeE-----i~~~nkgh~gpVhcVrFSP 277 (334)
T KOG0278|consen 211 DAKS--FGLLKSYK------MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEE-----IGSYNKGHFGPVHCVRFSP 277 (334)
T ss_pred cccc--ccceeecc------CccccccccccCCCceEEecCcceEEEEEeccCCce-----eeecccCCCCceEEEEECC
Confidence 9998 55555543 344688999999999999999999999999999853 333 488999999999999
Q ss_pred CCCEEEEEeCCCcEEEEcCCCcc
Q 048511 233 SSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 233 ~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
+|...++|++||+|+||.+..++
T Consensus 278 dGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 278 DGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred CCceeeccCCCceEEEEEecCCC
Confidence 99999999999999999986655
No 124
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=4.9e-25 Score=176.37 Aligned_cols=236 Identities=14% Similarity=0.147 Sum_probs=179.0
Q ss_pred EEeeeecCCceeEEEeeCCcccCCCCCc-cEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCC
Q 048511 22 ACELKGHTDWIRSLDFSLPVCTSGEAIS-ILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSS 100 (351)
Q Consensus 22 ~~~~~~h~~~V~~l~~~~~~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 100 (351)
+..|.||.+.|.|++=+ |.. ..++||+.||.|+|||+....+...+. .+.+.+..+.+.. ..+++.+.
T Consensus 59 v~~L~gHrdGV~~lakh--------p~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~-AH~G~V~Gi~v~~--~~~~tvgd 127 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKH--------PNKLSTVASGSCDGEVKIWNLSQRECIRTFK-AHEGLVRGICVTQ--TSFFTVGD 127 (433)
T ss_pred hhhccccccccchhhcC--------cchhhhhhccccCceEEEEehhhhhhhheee-cccCceeeEEecc--cceEEecC
Confidence 56789999999999998 444 789999999999999999876665444 3344566666655 55555566
Q ss_pred ceeEEEEEecc------ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccccc
Q 048511 101 SYQVSVESLLI------GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHS 174 (351)
Q Consensus 101 ~~~~~~~~~~~------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 174 (351)
+..++.|..-. .....+..+.-+ ...+. ++|++.+ |.|||.+. ..++..+. -.
T Consensus 128 DKtvK~wk~~~~p~~tilg~s~~~gIdh~------~~~~~------FaTcGe~--i~IWD~~R--~~Pv~sms-----wG 186 (433)
T KOG0268|consen 128 DKTVKQWKIDGPPLHTILGKSVYLGIDHH------RKNSV------FATCGEQ--IDIWDEQR--DNPVSSMS-----WG 186 (433)
T ss_pred CcceeeeeccCCcceeeeccccccccccc------ccccc------ccccCce--eeeccccc--CCccceee-----cC
Confidence 66666554211 012334455544 44555 8888765 88999987 55555555 34
Q ss_pred ccceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCC
Q 048511 175 ALGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWK 253 (351)
Q Consensus 175 ~~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~ 253 (351)
...|.++.|+|... .|++++.|+.|.|||++.. .+++.+.. .-.-+.|+|+|.+--|+++++|..++.||++.
T Consensus 187 ~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~-----~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~ 260 (433)
T KOG0268|consen 187 ADSISSVKFNPVETSILASCASDRSIVLYDLRQA-----SPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRN 260 (433)
T ss_pred CCceeEEecCCCcchheeeeccCCceEEEecccC-----Cccceeee-eccccceecCccccceeeccccccceehhhhh
Confidence 55789999999765 6777779999999999997 44554432 23457799999777788999999999999988
Q ss_pred ccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 254 NVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
.. .++...++|.+.|.+++|+| .|+-|++||.|.+||||...
T Consensus 261 l~---------~p~~v~~dhvsAV~dVdfsp--tG~EfvsgsyDksIRIf~~~ 302 (433)
T KOG0268|consen 261 LS---------RPLNVHKDHVSAVMDVDFSP--TGQEFVSGSYDKSIRIFPVN 302 (433)
T ss_pred hc---------ccchhhcccceeEEEeccCC--CcchhccccccceEEEeecC
Confidence 77 37777889999999999999 89999999999999999986
No 125
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=2.6e-23 Score=163.23 Aligned_cols=248 Identities=11% Similarity=0.070 Sum_probs=190.2
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK 81 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~ 81 (351)
++.||++++|++.. .. +...-.|..++.+++|. +...+++|+.||.|+.+|++++.... ...+..
T Consensus 31 ssWDgslrlYdv~~-~~---l~~~~~~~~plL~c~F~---------d~~~~~~G~~dg~vr~~Dln~~~~~~--igth~~ 95 (323)
T KOG1036|consen 31 SSWDGSLRLYDVPA-NS---LKLKFKHGAPLLDCAFA---------DESTIVTGGLDGQVRRYDLNTGNEDQ--IGTHDE 95 (323)
T ss_pred EeccCcEEEEeccc-hh---hhhheecCCceeeeecc---------CCceEEEeccCceEEEEEecCCccee--eccCCC
Confidence 67899999999988 42 22233489999999998 36689999999999999999876543 333466
Q ss_pred ceeeeEeeecCCeEEecCCceeEEEEEecc-------ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEe
Q 048511 82 EVISLASYIEGPVLVAGSSSYQVSVESLLI-------GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQ 154 (351)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd 154 (351)
.+.++.+.+....+++|+.+..+++|..-. ...+.|.++... ++. |+.|..|..|.+||
T Consensus 96 ~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--------g~~------LvVg~~~r~v~iyD 161 (323)
T KOG1036|consen 96 GIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--------GNR------LVVGTSDRKVLIYD 161 (323)
T ss_pred ceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEecc--------CCE------EEEeecCceEEEEE
Confidence 889999999999999999999999987641 133478888866 455 99999999999999
Q ss_pred ccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccccc---------ccE
Q 048511 155 PEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHF---------AAV 225 (351)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~---------~~v 225 (351)
++... ...... ...-...+.|+++-|++.-+++++.||+|.+=.++..+.. ......++.|. .+|
T Consensus 162 LRn~~--~~~q~r---eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~-~skkyaFkCHr~~~~~~~~~yPV 235 (323)
T KOG1036|consen 162 LRNLD--EPFQRR---ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEA-QSKKYAFKCHRLSEKDTEIIYPV 235 (323)
T ss_pred ccccc--chhhhc---cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHH-hhhceeEEeeecccCCceEEEEe
Confidence 99832 221111 1234557899999999888999999999998777654110 11233444443 379
Q ss_pred EEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecC
Q 048511 226 MDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD 296 (351)
Q Consensus 226 ~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~ 296 (351)
++|+|+|-...|+||+.||.|.+||+.+.+ .+..+......|..++|+. +|..||.++.
T Consensus 236 Nai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK----------rl~q~~~~~~SI~slsfs~--dG~~LAia~s 294 (323)
T KOG1036|consen 236 NAIAFHPIHGTFATGGSDGIVNIWDLFNRK----------RLKQLAKYETSISSLSFSM--DGSLLAIASS 294 (323)
T ss_pred ceeEeccccceEEecCCCceEEEccCcchh----------hhhhccCCCCceEEEEecc--CCCeEEEEec
Confidence 999999998999999999999999999887 4444433445699999998 9999998863
No 126
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.1e-22 Score=175.18 Aligned_cols=265 Identities=19% Similarity=0.295 Sum_probs=212.6
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecC-CceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHT-DWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+-.||.|.||++.. + +.+...+.++. ..|-+++|+ + +..|++.+.+|.|.-||+.+.+....+.. ..
T Consensus 43 sRt~g~IEiwN~~~-~-w~~~~vi~g~~drsIE~L~W~--------e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~-~g 110 (691)
T KOG2048|consen 43 SRTDGNIEIWNLSN-N-WFLEPVIHGPEDRSIESLAWA--------E-GGRLFSSGLSGSITEWDLHTLKQKYNIDS-NG 110 (691)
T ss_pred eccCCcEEEEccCC-C-ceeeEEEecCCCCceeeEEEc--------c-CCeEEeecCCceEEEEecccCceeEEecC-CC
Confidence 44689999999998 4 45566777665 489999998 3 55888999999999999999877655543 35
Q ss_pred cceeeeEeeecCCeEEecCCceeEEE----------EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeE
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSV----------ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTM 150 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~----------~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i 150 (351)
..+.+++.+|.+..+++|..++.+.. ...+...++.|.+++|+ +++.. +++|+.||.|
T Consensus 111 g~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~------~~~~~------i~~Gs~Dg~I 178 (691)
T KOG2048|consen 111 GAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWN------PTGTK------IAGGSIDGVI 178 (691)
T ss_pred cceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEec------CCccE------EEecccCceE
Confidence 67889999999999999987775432 33455667899999999 78888 9999999999
Q ss_pred EEEeccCCCcceEEEEEeccccc-cccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEE
Q 048511 151 MIWQPEKTTGIWMNVVTVGELSH-SALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDIS 229 (351)
Q Consensus 151 ~iwd~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~ 229 (351)
++||........+.+.++..... ...-|+++.|-.+ ..|++|...|+|.+||...+ .+++.+..|.+.|.+++
T Consensus 179 riwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~g-----TLiqS~~~h~adVl~La 252 (691)
T KOG2048|consen 179 RIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFG-----TLIQSHSCHDADVLALA 252 (691)
T ss_pred EEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCc-----chhhhhhhhhcceeEEE
Confidence 99999983322323333333333 3445788887754 46899999999999999987 67888999999999999
Q ss_pred eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 230 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
..+++.++++++.|+.|..|...... ..|........|.+.+.+++..+ + .+++|+.|..+.+-...
T Consensus 253 v~~~~d~vfsaGvd~~ii~~~~~~~~------~~wv~~~~r~~h~hdvrs~av~~--~--~l~sgG~d~~l~i~~s~ 319 (691)
T KOG2048|consen 253 VADNEDRVFSAGVDPKIIQYSLTTNK------SEWVINSRRDLHAHDVRSMAVIE--N--ALISGGRDFTLAICSSR 319 (691)
T ss_pred EcCCCCeEEEccCCCceEEEEecCCc------cceeeeccccCCcccceeeeeec--c--eEEecceeeEEEEcccc
Confidence 99999999999999999999887765 35878888889999999999987 3 89999999998886644
No 127
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=7.2e-26 Score=195.83 Aligned_cols=203 Identities=15% Similarity=0.242 Sum_probs=181.0
Q ss_pred eeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeE
Q 048511 25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQV 104 (351)
Q Consensus 25 ~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 104 (351)
+-+|...|.++..- ..++.+++|+.|..+-+|.+.......
T Consensus 24 ~~~hsaav~~lk~~--------~s~r~~~~Gg~~~k~~L~~i~kp~~i~------------------------------- 64 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIR--------KSSRSLVTGGEDEKVNLWAIGKPNAIT------------------------------- 64 (825)
T ss_pred hhhhhhhhceeeee--------ccceeeccCCCceeeccccccCCchhh-------------------------------
Confidence 34688889998887 778999999999999999987654332
Q ss_pred EEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEc
Q 048511 105 SVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWS 184 (351)
Q Consensus 105 ~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 184 (351)
.+.+|..+|.++.|+ .+..+ |++|+.+|+|++||++. ...++++. +|...+.++.|+
T Consensus 65 ----S~~~hespIeSl~f~------~~E~L------laagsasgtiK~wDlee--Ak~vrtLt-----gh~~~~~sv~f~ 121 (825)
T KOG0267|consen 65 ----SLTGHESPIESLTFD------TSERL------LAAGSASGTIKVWDLEE--AKIVRTLT-----GHLLNITSVDFH 121 (825)
T ss_pred ----eeeccCCcceeeecC------cchhh------hcccccCCceeeeehhh--hhhhhhhh-----ccccCcceeeec
Confidence 257899999999999 67778 99999999999999998 66666655 899999999999
Q ss_pred CCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccce
Q 048511 185 PDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSW 264 (351)
Q Consensus 185 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 264 (351)
|-+.+.+.++.|..+.+||.+.. .|.+.+.+|...|..+.|+|+|++++++++|..++|||...++
T Consensus 122 P~~~~~a~gStdtd~~iwD~Rk~-----Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk--------- 187 (825)
T KOG0267|consen 122 PYGEFFASGSTDTDLKIWDIRKK-----GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK--------- 187 (825)
T ss_pred cceEEeccccccccceehhhhcc-----CceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccc---------
Confidence 99999999999999999999865 5788999999999999999999999999999999999998887
Q ss_pred EEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 265 HEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 265 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
....+..|...+..+.|+| ...++++||.|++|++||++
T Consensus 188 -~~~ef~~~e~~v~sle~hp--~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 188 -LSKEFKSHEGKVQSLEFHP--LEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred -cccccccccccccccccCc--hhhhhccCCCCceeeeeccc
Confidence 6777888999999999999 78889999999999999987
No 128
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.4e-23 Score=161.42 Aligned_cols=223 Identities=20% Similarity=0.394 Sum_probs=173.1
Q ss_pred eecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEE
Q 048511 26 KGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVS 105 (351)
Q Consensus 26 ~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 105 (351)
.+|.+-|.++.|. ..|+++|||+.|++|+|||........ .
T Consensus 10 s~h~DlihdVs~D--------~~GRRmAtCSsDq~vkI~d~~~~s~~W-------------------------------~ 50 (361)
T KOG2445|consen 10 SGHKDLIHDVSFD--------FYGRRMATCSSDQTVKIWDSTSDSGTW-------------------------------S 50 (361)
T ss_pred cCCcceeeeeeec--------ccCceeeeccCCCcEEEEeccCCCCce-------------------------------E
Confidence 4789999999999 889999999999999999986554332 2
Q ss_pred EEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCC-----CcceEEEEEeccccccccceEE
Q 048511 106 VESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKT-----TGIWMNVVTVGELSHSALGFYG 180 (351)
Q Consensus 106 ~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~i~~ 180 (351)
+-...+.|.+.|..+.|.+. .-|+. +|+++.|+++.||.-... ..+++..-. +......|+.
T Consensus 51 ~Ts~Wrah~~Si~rV~WAhP----EfGqv------vA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~tt---l~DsrssV~D 117 (361)
T KOG2445|consen 51 CTSSWRAHDGSIWRVVWAHP----EFGQV------VATCSYDRTVSIWEEQEKSEEAHGRRWVRRTT---LVDSRSSVTD 117 (361)
T ss_pred EeeeEEecCCcEEEEEecCc----cccce------EEEEecCCceeeeeecccccccccceeEEEEE---eecCCcceeE
Confidence 33456789999999999863 35778 999999999999986321 123333332 3356778999
Q ss_pred EEEcCC--CCEEEEEeeCCeEEEEEccc-CcccCcccccccc-------cccccEEEEEeecC---CCEEEEEeCC----
Q 048511 181 GHWSPD--GRSILAHGYGGAFHLWRNVG-VDIDNWQPQKVPS-------GHFAAVMDISWSRS---SDYLLSVSHD---- 243 (351)
Q Consensus 181 i~~~~~--~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~-------~~~~~v~~v~~sp~---~~~l~s~~~d---- 243 (351)
+.|.|. |-.|++++.||.+|||+.-. .....|++...++ .+.....++.|+|. ..+||.|+.+
T Consensus 118 V~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~ 197 (361)
T KOG2445|consen 118 VKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPH 197 (361)
T ss_pred EEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCcc
Confidence 999995 56899999999999999743 3344455555555 45667889999984 4678888765
Q ss_pred -CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeC--CCcEEEEecCCCeEEEEecCc
Q 048511 244 -QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGK--GNHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 244 -g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~l~s~~~dg~v~vw~~~~ 307 (351)
+.+.||...... +.|..+..+..|..+|+.++|.|.. .-.+||+++.|| |+||.+..
T Consensus 198 ~~~~~Iye~~e~~------rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 198 LNKVKIYEYNENG------RKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred ccceEEEEecCCc------ceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEee
Confidence 488999886664 4788899999999999999999932 246899999999 99999874
No 129
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=3.1e-23 Score=161.96 Aligned_cols=269 Identities=21% Similarity=0.290 Sum_probs=191.6
Q ss_pred CCCCCceEEEEEccCCCc---------eEEE---EeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCC
Q 048511 1 MGGLDNKIHLYRGQRTGK---------FVRA---CELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLAL 68 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~---------~~~~---~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~ 68 (351)
+|+.||.|.|||++.... ..++ ..-.+|.-.|..+.|- | -+...+.+++-|.++++||.++
T Consensus 61 SGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~Wy----P---~DtGmFtssSFDhtlKVWDtnT 133 (397)
T KOG4283|consen 61 SGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWY----P---IDTGMFTSSSFDHTLKVWDTNT 133 (397)
T ss_pred ecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEe----e---ecCceeecccccceEEEeeccc
Confidence 589999999999986211 1111 1124677799999999 4 4666889999999999999998
Q ss_pred CcccceeecccccceeeeEeeec---CCeEEecCCceeEEE--------EEeccccccceEEEEecCCCCCCCCCcccCC
Q 048511 69 RGSSANTQSTYRKEVISLASYIE---GPVLVAGSSSYQVSV--------ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQ 137 (351)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~--------~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~ 137 (351)
.+....+.. +..+.+-+++|- -.++++|.++-.+++ -..+.||.+.|.++.|+| ...-.
T Consensus 134 lQ~a~~F~m--e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp-----~~e~v--- 203 (397)
T KOG4283|consen 134 LQEAVDFKM--EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP-----SSEWV--- 203 (397)
T ss_pred ceeeEEeec--CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc-----CceeE---
Confidence 766544432 335556666663 346667777777654 356899999999999997 44456
Q ss_pred CceeEEeecCCeEEEEeccCCCcceEEEEEec---------cccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCc
Q 048511 138 PSSILSASMDKTMMIWQPEKTTGIWMNVVTVG---------ELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVD 208 (351)
Q Consensus 138 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~ 208 (351)
|++|+.||.|++||++...+ +...+... ....|.+.+..++|..++.++++++.|..+++|+...++
T Consensus 204 ---LatgsaDg~irlWDiRrasg-cf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 204 ---LATGSADGAIRLWDIRRASG-CFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ---EEecCCCceEEEEEeecccc-eeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 99999999999999997422 22222211 134677889999999999999999999999999998775
Q ss_pred ccC--cccccc-cccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeee
Q 048511 209 IDN--WQPQKV-PSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQG 285 (351)
Q Consensus 209 ~~~--~~~~~~-~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 285 (351)
... +-++.. -..|. .+. +. +-+...++---.++.+.++.+-.++ .+..+..|...|.|.++-|
T Consensus 280 ntl~~~g~~~~n~~~~~-~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs----------~ir~l~~h~k~i~c~~~~~- 345 (397)
T KOG4283|consen 280 NTLREFGPIIHNQTTSF-AVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGS----------FVRRLSTHLKRINCAAYRP- 345 (397)
T ss_pred ccccccccccccccccc-eEE-Ee-ecccceEEEEecCCeEEEEEccCce----------EEEeeecccceeeEEeecC-
Confidence 311 111100 00011 111 22 2233344444456889999887776 7777788888899999999
Q ss_pred CCCcEEEEecCCCeEEEEec
Q 048511 286 KGNHRFVSGADEKVARVFEA 305 (351)
Q Consensus 286 ~~~~~l~s~~~dg~v~vw~~ 305 (351)
+-+...+|..|+.|..|-.
T Consensus 346 -~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 346 -DFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred -chhhhhccccCCccccccc
Confidence 8899999999999999986
No 130
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=1.2e-23 Score=190.08 Aligned_cols=240 Identities=18% Similarity=0.256 Sum_probs=179.4
Q ss_pred cCCceeEEEeeCCcccCCCCCccEEEEee--CCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEE
Q 048511 28 HTDWIRSLDFSLPVCTSGEAISILLVSSS--QDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVS 105 (351)
Q Consensus 28 h~~~V~~l~~~~~~~~~~~~~~~~l~t~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 105 (351)
+...|.+++.+ |++..++||+ .|+.++||+...-......... . .-+
T Consensus 12 ~~~~IfSIdv~--------pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~---~--------------------l~k 60 (942)
T KOG0973|consen 12 NEKSIFSIDVH--------PDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNE---N--------------------LPK 60 (942)
T ss_pred CCeeEEEEEec--------CCceeEecCCccccccceeeccccccchhhhhhc---c--------------------cch
Confidence 34579999999 8999999999 9999999997632211000000 0 002
Q ss_pred EEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcce----------EEE-EEecccccc
Q 048511 106 VESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIW----------MNV-VTVGELSHS 174 (351)
Q Consensus 106 ~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~----------~~~-~~~~~~~~~ 174 (351)
.......|.+.|+|+.|+ +||++ ||+|+.|+.|.||+........ +.. -....+.+|
T Consensus 61 ~l~~m~~h~~sv~CVR~S------~dG~~------lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H 128 (942)
T KOG0973|consen 61 HLCTMDDHDGSVNCVRFS------PDGSY------LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH 128 (942)
T ss_pred hheeeccccCceeEEEEC------CCCCe------EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecC
Confidence 234456799999999999 89999 9999999999999988300000 000 011123489
Q ss_pred ccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCc
Q 048511 175 ALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKN 254 (351)
Q Consensus 175 ~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~ 254 (351)
...|..++|+|++.++++++.|++|.+|+..+- ..+..+.+|.+.|-.+.|.|-|+|||+-+.|++|+||++.+-
T Consensus 129 ~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-----~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw 203 (942)
T KOG0973|consen 129 DSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-----ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDW 203 (942)
T ss_pred CCccceeccCCCccEEEEecccceEEEEccccc-----eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccc
Confidence 999999999999999999999999999999885 678999999999999999999999999999999999996542
Q ss_pred ccccc------------------------------------------CccceEEeccccccccceeEEEEeee---CC--
Q 048511 255 VASLM------------------------------------------GENSWHEVARPQVHGHDINCVTIIQG---KG-- 287 (351)
Q Consensus 255 ~~~~~------------------------------------------~~~~~~~~~~~~~~~~~i~~~~~~~~---~~-- 287 (351)
..... ....|+.-..+.+|..++.++.|+|. ..
T Consensus 204 ~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ 283 (942)
T KOG0973|consen 204 GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNK 283 (942)
T ss_pred eeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccc
Confidence 11110 23456666677799999999999981 01
Q ss_pred ------C----cEEEEecCCCeEEEEecC-chhhhceee
Q 048511 288 ------N----HRFVSGADEKVARVFEAP-LSFLKTLNH 315 (351)
Q Consensus 288 ------~----~~l~s~~~dg~v~vw~~~-~~~~~~~~~ 315 (351)
. ..+|+||.|++|.||... .+.+.....
T Consensus 284 ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~ 322 (942)
T KOG0973|consen 284 NGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHN 322 (942)
T ss_pred cCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhh
Confidence 1 278899999999999964 444443333
No 131
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=8.7e-22 Score=167.49 Aligned_cols=262 Identities=13% Similarity=0.080 Sum_probs=180.9
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEE-EEeeCCCcEEEEecCCCcccceeeccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILL-VSSSQDKVIRIWKLALRGSSANTQSTY 79 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l-~t~~~dg~i~iwd~~~~~~~~~~~~~~ 79 (351)
+++.|+.|++||..+ ++ .+..+..|. .+.+++|+ ++++.+ ++++.++.|++||..+++.......
T Consensus 6 s~~~d~~v~~~d~~t-~~--~~~~~~~~~-~~~~l~~~--------~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-- 71 (300)
T TIGR03866 6 SNEKDNTISVIDTAT-LE--VTRTFPVGQ-RPRGITLS--------KDGKLLYVCASDSDTIQVIDLATGEVIGTLPS-- 71 (300)
T ss_pred EecCCCEEEEEECCC-Cc--eEEEEECCC-CCCceEEC--------CCCCEEEEEECCCCeEEEEECCCCcEEEeccC--
Confidence 467899999999988 64 455666554 46789999 778766 5677899999999988765543332
Q ss_pred ccceeeeEeeecCCeEEec-CCceeEEEEEecc-------ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCC-eE
Q 048511 80 RKEVISLASYIEGPVLVAG-SSSYQVSVESLLI-------GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDK-TM 150 (351)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~-------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~-~i 150 (351)
......+.++++++.++++ ..++.+.++..-. .+...+.+++|+ +++.+ +++++.++ .+
T Consensus 72 ~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~------~dg~~------l~~~~~~~~~~ 139 (300)
T TIGR03866 72 GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVS------PDGKI------VVNTSETTNMA 139 (300)
T ss_pred CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEEC------CCCCE------EEEEecCCCeE
Confidence 2235677899999877654 4456666554311 112346788999 78888 88887765 56
Q ss_pred EEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-eCCeEEEEEcccCcccCcccccccccc-------c
Q 048511 151 MIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNVGVDIDNWQPQKVPSGH-------F 222 (351)
Q Consensus 151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~-------~ 222 (351)
.+||.++ +....... ....+.+++|+|+++++++++ .++.|++||+++.+ .+..+..+ .
T Consensus 140 ~~~d~~~--~~~~~~~~------~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~-----~~~~~~~~~~~~~~~~ 206 (300)
T TIGR03866 140 HFIDTKT--YEIVDNVL------VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK-----VIKKITFEIPGVHPEA 206 (300)
T ss_pred EEEeCCC--CeEEEEEE------cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce-----eeeeeeeccccccccc
Confidence 7789877 55444332 122356789999999886554 68999999998763 22222211 1
Q ss_pred ccEEEEEeecCCCEEEE-EeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEe-cCCCeE
Q 048511 223 AAVMDISWSRSSDYLLS-VSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSG-ADEKVA 300 (351)
Q Consensus 223 ~~v~~v~~sp~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~-~~dg~v 300 (351)
.....++|+|++++++. .+.++.+.+||+++.+ ..... .+...+.+++|+| ++.+|+++ +.++.|
T Consensus 207 ~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~----------~~~~~-~~~~~~~~~~~~~--~g~~l~~~~~~~~~i 273 (300)
T TIGR03866 207 VQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE----------VLDYL-LVGQRVWQLAFTP--DEKYLLTTNGVSNDV 273 (300)
T ss_pred CCccceEECCCCCEEEEEcCCCCeEEEEECCCCc----------EEEEE-EeCCCcceEEECC--CCCEEEEEcCCCCeE
Confidence 12356889999998554 4556789999997765 22211 2345689999999 88888876 579999
Q ss_pred EEEecC-chhhhcee
Q 048511 301 RVFEAP-LSFLKTLN 314 (351)
Q Consensus 301 ~vw~~~-~~~~~~~~ 314 (351)
++||+. ++.+.+++
T Consensus 274 ~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 274 SVIDVAALKVIKSIK 288 (300)
T ss_pred EEEECCCCcEEEEEE
Confidence 999987 66666665
No 132
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.2e-22 Score=159.13 Aligned_cols=217 Identities=17% Similarity=0.208 Sum_probs=158.8
Q ss_pred cCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEE
Q 048511 28 HTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVE 107 (351)
Q Consensus 28 h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 107 (351)
-.+.|.+|+|+ | ....+++.+|.|++||+|+++.......
T Consensus 26 P~DsIS~l~FS----P---~~~~~~~A~SWD~tVR~wevq~~g~~~~--------------------------------- 65 (347)
T KOG0647|consen 26 PEDSISALAFS----P---QADNLLAAGSWDGTVRIWEVQNSGQLVP--------------------------------- 65 (347)
T ss_pred cccchheeEec----c---ccCceEEecccCCceEEEEEecCCcccc---------------------------------
Confidence 46789999999 2 2566777999999999999987422211
Q ss_pred EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCC
Q 048511 108 SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG 187 (351)
Q Consensus 108 ~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 187 (351)
+....|.++|.+++|+ .||.. +++|+.|+.+++||+.+ ++.. .+. .|..+|.++.|-+..
T Consensus 66 ka~~~~~~PvL~v~Ws------ddgsk------Vf~g~~Dk~~k~wDL~S--~Q~~-~v~-----~Hd~pvkt~~wv~~~ 125 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWS------DDGSK------VFSGGCDKQAKLWDLAS--GQVS-QVA-----AHDAPVKTCHWVPGM 125 (347)
T ss_pred hhhhccCCCeEEEEEc------cCCce------EEeeccCCceEEEEccC--CCee-eee-----ecccceeEEEEecCC
Confidence 1235689999999999 89999 99999999999999998 5433 333 789999999998766
Q ss_pred C--EEEEEeeCCeEEEEEcccCcccCcccccccc-------------------------------------cc----ccc
Q 048511 188 R--SILAHGYGGAFHLWRNVGVDIDNWQPQKVPS-------------------------------------GH----FAA 224 (351)
Q Consensus 188 ~--~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-------------------------------------~~----~~~ 224 (351)
. .|++|+.|++|++||.+.... +.++. .+ .-.
T Consensus 126 ~~~cl~TGSWDKTlKfWD~R~~~p-----v~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q 200 (347)
T KOG0647|consen 126 NYQCLVTGSWDKTLKFWDTRSSNP-----VATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQ 200 (347)
T ss_pred CcceeEecccccceeecccCCCCe-----eeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccce
Confidence 5 899999999999999987532 11111 11 224
Q ss_pred EEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccc---ccccceeEEEEeeeCCCcEEEEecCCCeEE
Q 048511 225 VMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQ---VHGHDINCVTIIQGKGNHRFVSGADEKVAR 301 (351)
Q Consensus 225 v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~ 301 (351)
+++|+..++....+.|+-+|.+.|..+..+.... ...+++.+.-. ..-+.|++++|+| ....|+++|.||++.
T Consensus 201 ~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~--nFtFkCHR~~~~~~~~VYaVNsi~FhP--~hgtlvTaGsDGtf~ 276 (347)
T KOG0647|consen 201 TRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKD--NFTFKCHRSTNSVNDDVYAVNSIAFHP--VHGTLVTAGSDGTFS 276 (347)
T ss_pred eeEEEEEecCCceEeeeecceEEEEecCCCCccC--ceeEEEeccCCCCCCceEEecceEeec--ccceEEEecCCceEE
Confidence 6778777777777888888888888877652110 12333333211 1124589999999 788999999999999
Q ss_pred EEecC-chhhhce
Q 048511 302 VFEAP-LSFLKTL 313 (351)
Q Consensus 302 vw~~~-~~~~~~~ 313 (351)
+||-. ...+++.
T Consensus 277 FWDkdar~kLk~s 289 (347)
T KOG0647|consen 277 FWDKDARTKLKTS 289 (347)
T ss_pred Eecchhhhhhhcc
Confidence 99976 3344443
No 133
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=3.6e-23 Score=175.75 Aligned_cols=256 Identities=20% Similarity=0.219 Sum_probs=188.8
Q ss_pred EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCC--eEEe
Q 048511 20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGP--VLVA 97 (351)
Q Consensus 20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~ 97 (351)
.+...+.||++.|.+|... +.|.+|++|+.||+|+||.+.++.++...... ..+.+++|+|.+. +|++
T Consensus 391 ~~~lvyrGHtg~Vr~iSvd--------p~G~wlasGsdDGtvriWEi~TgRcvr~~~~d--~~I~~vaw~P~~~~~vLAv 460 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVD--------PSGEWLASGSDDGTVRIWEIATGRCVRTVQFD--SEIRSVAWNPLSDLCVLAV 460 (733)
T ss_pred eeeeeEeccCCeEEEEEec--------CCcceeeecCCCCcEEEEEeecceEEEEEeec--ceeEEEEecCCCCceeEEE
Confidence 3455788999999999999 88999999999999999999999998766543 4788999988665 3443
Q ss_pred cCCceeE--------------------------------EEE------------EeccccccceEEEEecCCCCCCCCCc
Q 048511 98 GSSSYQV--------------------------------SVE------------SLLIGHEDWVYSVQWEPPSTAPSDGV 133 (351)
Q Consensus 98 ~~~~~~~--------------------------------~~~------------~~~~~h~~~v~~l~~~p~~~~~~~~~ 133 (351)
+.....+ ..| .....|...|..+.|+ ..|.
T Consensus 461 A~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWH------rkGD 534 (733)
T KOG0650|consen 461 AVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWH------RKGD 534 (733)
T ss_pred EecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeee------cCCc
Confidence 2211100 011 1223467778888888 7888
Q ss_pred ccCCCceeEEeecC---CeEEEEeccCCCcce--------EEEEEec--------------------------ccccccc
Q 048511 134 SCQQPSSILSASMD---KTMMIWQPEKTTGIW--------MNVVTVG--------------------------ELSHSAL 176 (351)
Q Consensus 134 ~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~--------~~~~~~~--------------------------~~~~~~~ 176 (351)
+ |++...+ ..|.|+++.....+. +....+. .+.....
T Consensus 535 Y------latV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~k 608 (733)
T KOG0650|consen 535 Y------LATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSK 608 (733)
T ss_pred e------EEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCe
Confidence 8 8777553 457788776511110 0000000 0113345
Q ss_pred ceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccc
Q 048511 177 GFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVA 256 (351)
Q Consensus 177 ~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~ 256 (351)
.|.+++.+|.|..|+.++.|+.+..||+.-+. ++.+++..|...+++|+|++.-.+|++|+.||++.||--.-...
T Consensus 609 wiS~msihp~GDnli~gs~d~k~~WfDldlss----kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~D 684 (733)
T KOG0650|consen 609 WISSMSIHPNGDNLILGSYDKKMCWFDLDLSS----KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYND 684 (733)
T ss_pred eeeeeeecCCCCeEEEecCCCeeEEEEcccCc----chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehh
Confidence 67889999999999999999999999997764 67889999999999999999999999999999999985322110
Q ss_pred cccCccceEEeccccccccc----eeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511 257 SLMGENSWHEVARPQVHGHD----INCVTIIQGKGNHRFVSGADEKVARVFE 304 (351)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~~~l~s~~~dg~v~vw~ 304 (351)
..+...+.++..+.+|... |..+.|+| ..-+|.+++.||+|++|.
T Consensus 685 -l~qnpliVPlK~L~gH~~~~~~gVLd~~wHP--~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 685 -LLQNPLIVPLKRLRGHEKTNDLGVLDTIWHP--RQPWLFSAGADGTIRLFT 733 (733)
T ss_pred -hhcCCceEeeeeccCceeecccceEeecccC--CCceEEecCCCceEEeeC
Confidence 0012345678888888766 88889999 889999999999999993
No 134
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.7e-24 Score=195.18 Aligned_cols=236 Identities=18% Similarity=0.218 Sum_probs=186.5
Q ss_pred CCCCCceEEEEEccC---CCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeec
Q 048511 1 MGGLDNKIHLYRGQR---TGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQS 77 (351)
Q Consensus 1 tg~~dg~i~vw~~~~---~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~ 77 (351)
.|..||.|.+||... +++...+.++..|.+.|..+.|+ + ..+++||+|+.||.|.|||+++.+......
T Consensus 85 GG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN----~---~q~nlLASGa~~geI~iWDlnn~~tP~~~~- 156 (1049)
T KOG0307|consen 85 GGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFN----P---FQGNLLASGADDGEILIWDLNKPETPFTPG- 156 (1049)
T ss_pred ccccCCceEEecchhhccCcchHHHhhhcccCCceeeeecc----c---cCCceeeccCCCCcEEEeccCCcCCCCCCC-
Confidence 378899999999765 35556678889999999999999 3 345699999999999999998754432221
Q ss_pred ccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC
Q 048511 78 TYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK 157 (351)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 157 (351)
-..-.+.|.+++|+- ....+ |++++.+|++.|||++.
T Consensus 157 --------------------------------~~~~~~eI~~lsWNr-----kvqhI------LAS~s~sg~~~iWDlr~ 193 (1049)
T KOG0307|consen 157 --------------------------------SQAPPSEIKCLSWNR-----KVSHI------LASGSPSGRAVIWDLRK 193 (1049)
T ss_pred --------------------------------CCCCcccceEeccch-----hhhHH------hhccCCCCCceeccccC
Confidence 012356799999994 44556 99999999999999998
Q ss_pred CCcceEEEEEeccccccccceEEEEEcCCCC-EEEEEeeC---CeEEEEEcccCcccCcccccccccccccEEEEEeecC
Q 048511 158 TTGIWMNVVTVGELSHSALGFYGGHWSPDGR-SILAHGYG---GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS 233 (351)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 233 (351)
.+.+..+.. . .....+..++|+|+.. .+++++.| -.|.+||+|... .+++.+.+|...|.++.|++.
T Consensus 194 --~~pii~ls~--~-~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as----sP~k~~~~H~~GilslsWc~~ 264 (1049)
T KOG0307|consen 194 --KKPIIKLSD--T-PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS----SPLKILEGHQRGILSLSWCPQ 264 (1049)
T ss_pred --CCccccccc--C-CCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC----CchhhhcccccceeeeccCCC
Confidence 443333331 1 2224577899999864 56666655 469999998775 788999999999999999996
Q ss_pred C-CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511 234 S-DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 234 ~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 307 (351)
. ++|++++.|+.|.+|+.++++ .+..+...+..+..+.|+| .+...|++++-||.|-|+.+.+
T Consensus 265 D~~lllSsgkD~~ii~wN~~tgE----------vl~~~p~~~nW~fdv~w~p-r~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 265 DPRLLLSSGKDNRIICWNPNTGE----------VLGELPAQGNWCFDVQWCP-RNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred CchhhhcccCCCCeeEecCCCce----------EeeecCCCCcceeeeeecC-CCcchhhhheeccceeeeeeec
Confidence 6 889999999999999999987 6666666777899999999 4567999999999999999764
No 135
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.91 E-value=1.8e-22 Score=177.60 Aligned_cols=267 Identities=11% Similarity=0.137 Sum_probs=201.6
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc---cceeec
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS---SANTQS 77 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~---~~~~~~ 77 (351)
+|+..|.+.+||++. .++ ......+|.+.|....|. +....++|++.|..+++|=.+++.- ......
T Consensus 262 s~~~~G~m~~wDLe~-kkl-~~v~~nah~~sv~~~~fl--------~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~ 331 (910)
T KOG1539|consen 262 SGRSNGDMAFWDLEK-KKL-INVTRNAHYGSVTGATFL--------PGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRG 331 (910)
T ss_pred eccCCceEEEEEcCC-Cee-eeeeeccccCCcccceec--------CCCceEeeccCCCceeEEEeeCCCCcchheeecc
Confidence 467789999999998 533 233445899999999999 7888999999999999997764432 233344
Q ss_pred ccccceeeeEee-ecCCeEEecCCceeE----------------------------------------------------
Q 048511 78 TYRKEVISLASY-IEGPVLVAGSSSYQV---------------------------------------------------- 104 (351)
Q Consensus 78 ~~~~~~~~~~~~-~~~~~l~~~~~~~~~---------------------------------------------------- 104 (351)
++..+..++.|. .+|..+..+..+...
T Consensus 332 GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W 411 (910)
T KOG1539|consen 332 GHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEW 411 (910)
T ss_pred CCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhh
Confidence 555666666665 455655554433321
Q ss_pred -------------EEEEe--------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC
Q 048511 105 -------------SVESL--------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK 157 (351)
Q Consensus 105 -------------~~~~~--------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 157 (351)
..|.. ++.....+++++.+ +.|++ .+.|+..|.|-+|++++
T Consensus 412 ~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs------~CGNF------~~IG~S~G~Id~fNmQS 479 (910)
T KOG1539|consen 412 DNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVS------FCGNF------VFIGYSKGTIDRFNMQS 479 (910)
T ss_pred cceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEe------ccCce------EEEeccCCeEEEEEccc
Confidence 00100 11112457788888 78898 99999999999999998
Q ss_pred CCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc---------------------------
Q 048511 158 TTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID--------------------------- 210 (351)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~--------------------------- 210 (351)
|.....+- ....|..+|+.++.+.-++.+++++.+|.+.+||+.+....
T Consensus 480 --Gi~r~sf~--~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~dd 555 (910)
T KOG1539|consen 480 --GIHRKSFG--DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDD 555 (910)
T ss_pred --Ceeecccc--cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCc
Confidence 76665552 33478999999999999999999999999999999765310
Q ss_pred ---------CcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEE
Q 048511 211 ---------NWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVT 281 (351)
Q Consensus 211 ---------~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 281 (351)
..+.++.+.+|...|++++|||||++|++++.|++|++||+.++. .+-.+ .-..+++.+.
T Consensus 556 f~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~----------lID~~-~vd~~~~sls 624 (910)
T KOG1539|consen 556 FSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT----------LIDGL-LVDSPCTSLS 624 (910)
T ss_pred eeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc----------eeeeE-ecCCcceeeE
Confidence 012345677899999999999999999999999999999998887 33333 3346689999
Q ss_pred EeeeCCCcEEEEecCC-CeEEEEecC
Q 048511 282 IIQGKGNHRFVSGADE-KVARVFEAP 306 (351)
Q Consensus 282 ~~~~~~~~~l~s~~~d-g~v~vw~~~ 306 (351)
|+| +|++||+...| .-|++|.-.
T Consensus 625 ~SP--ngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 625 FSP--NGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred ECC--CCCEEEEEEecCceEEEEEch
Confidence 999 99999999988 679999854
No 136
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2e-22 Score=179.06 Aligned_cols=255 Identities=15% Similarity=0.205 Sum_probs=190.7
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
|++.||.|++|+...+. ..-.++.-|...|.+++.. +.+|++|+.+++|.+|.+..++.-. +.....
T Consensus 30 tcgsdg~ir~~~~~sd~--e~P~ti~~~g~~v~~ia~~----------s~~f~~~s~~~tv~~y~fps~~~~~-iL~Rft 96 (933)
T KOG1274|consen 30 TCGSDGDIRKWKTNSDE--EEPETIDISGELVSSIACY----------SNHFLTGSEQNTVLRYKFPSGEEDT-ILARFT 96 (933)
T ss_pred EecCCCceEEeecCCcc--cCCchhhccCceeEEEeec----------ccceEEeeccceEEEeeCCCCCccc-eeeeee
Confidence 47889999999876621 1112333377788888776 5599999999999999998775432 222234
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI 152 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i 152 (351)
-++..++++.+|..++.|+.+..+++.. .+.+|..+|.++.|+ |++++ ||+.+-||.|++
T Consensus 97 lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~------p~~~f------LAvss~dG~v~i 164 (933)
T KOG1274|consen 97 LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD------PKGNF------LAVSSCDGKVQI 164 (933)
T ss_pred ccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEc------CCCCE------EEEEecCceEEE
Confidence 5788999999999999999999998764 578999999999999 78899 999999999999
Q ss_pred EeccCCCcceEEEEEecc--cccc-ccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc--cccccEEE
Q 048511 153 WQPEKTTGIWMNVVTVGE--LSHS-ALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS--GHFAAVMD 227 (351)
Q Consensus 153 wd~~~~~~~~~~~~~~~~--~~~~-~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--~~~~~v~~ 227 (351)
||++. +....++..-. .... ...+..++|+|++..++....|+.|.+|+..+-+ ....+. .+...+..
T Consensus 165 w~~~~--~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we-----~~f~Lr~~~~ss~~~~ 237 (933)
T KOG1274|consen 165 WDLQD--GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE-----LQFKLRDKLSSSKFSD 237 (933)
T ss_pred EEccc--chhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce-----eheeecccccccceEE
Confidence 99998 65554443211 1111 3456779999999999999999999999988753 333333 34455899
Q ss_pred EEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEE
Q 048511 228 ISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVF 303 (351)
Q Consensus 228 v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw 303 (351)
+.|+|+|+|||+++.||.|.|||..+.. . ......|.|++|.| +...+-.-...|...+|
T Consensus 238 ~~wsPnG~YiAAs~~~g~I~vWnv~t~~----------~----~~~~~~Vc~~aw~p--~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 238 LQWSPNGKYIAASTLDGQILVWNVDTHE----------R----HEFKRAVCCEAWKP--NANAITLITALGTLGVS 297 (933)
T ss_pred EEEcCCCcEEeeeccCCcEEEEecccch----------h----ccccceeEEEecCC--CCCeeEEEeeccccccC
Confidence 9999999999999999999999997633 1 12234589999988 55555444444444444
No 137
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.1e-22 Score=158.64 Aligned_cols=218 Identities=21% Similarity=0.264 Sum_probs=173.4
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+||.|-+|+|||+.. . ..+..+-.|.+.|+++.|.+| .....|++|+.||.|.+|+......+..+. .+.
T Consensus 58 SGssDetI~IYDm~k-~--~qlg~ll~HagsitaL~F~~~------~S~shLlS~sdDG~i~iw~~~~W~~~~slK-~H~ 127 (362)
T KOG0294|consen 58 SGSSDETIHIYDMRK-R--KQLGILLSHAGSITALKFYPP------LSKSHLLSGSDDGHIIIWRVGSWELLKSLK-AHK 127 (362)
T ss_pred ccCCCCcEEEEeccc-h--hhhcceeccccceEEEEecCC------cchhheeeecCCCcEEEEEcCCeEEeeeec-ccc
Confidence 589999999999988 4 456778889999999999932 233489999999999999998875554443 445
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEeccccccce-------EEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWV-------YSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW 153 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v-------~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 153 (351)
..+..++.+|.+++-++-+.+..++.|....|....| +.+.|+ +.|.+ |+.++.++ |-||
T Consensus 128 ~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~------~~Gd~------F~v~~~~~-i~i~ 194 (362)
T KOG0294|consen 128 GQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWS------PQGDH------FVVSGRNK-IDIY 194 (362)
T ss_pred cccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEc------CCCCE------EEEEeccE-EEEE
Confidence 5699999999999999999999999988877655443 458899 67777 88877764 8899
Q ss_pred eccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEe--e
Q 048511 154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISW--S 231 (351)
Q Consensus 154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~--s 231 (351)
.+.. -.....+. ....+.++.|- ++..|++|+.|+.|.+||.... .+...+.+|...|.++.+ .
T Consensus 195 q~d~--A~v~~~i~------~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-----~~~~~~~AH~~RVK~i~~~~~ 260 (362)
T KOG0294|consen 195 QLDN--ASVFREIE------NPKRILCATFL-DGSELLVGGDNEWISLKDTDSD-----TPLTEFLAHENRVKDIASYTN 260 (362)
T ss_pred eccc--HhHhhhhh------ccccceeeeec-CCceEEEecCCceEEEeccCCC-----ccceeeecchhheeeeEEEec
Confidence 9887 33322222 22346666663 5678999999999999999875 678899999999999984 4
Q ss_pred cCCCEEEEEeCCCcEEEEcCCCcc
Q 048511 232 RSSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 232 p~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
|++.+|+|++.||.|+|||++...
T Consensus 261 ~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 261 PEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred CCceEEEEeccCceEEEEEccccc
Confidence 678899999999999999997664
No 138
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=6.9e-22 Score=175.70 Aligned_cols=237 Identities=12% Similarity=0.136 Sum_probs=184.4
Q ss_pred eecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCc-ccceeecccccceeeeEeeecCCeEEecCCceeE
Q 048511 26 KGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRG-SSANTQSTYRKEVISLASYIEGPVLVAGSSSYQV 104 (351)
Q Consensus 26 ~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 104 (351)
.+|...-+.|+|. ++|++|+|++.||.|++|+..... ....+.. .......+...+..|+++..+..+
T Consensus 10 yaht~G~t~i~~d--------~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~---~g~~v~~ia~~s~~f~~~s~~~tv 78 (933)
T KOG1274|consen 10 YAHTGGLTLICYD--------PDGEFICTCGSDGDIRKWKTNSDEEEPETIDI---SGELVSSIACYSNHFLTGSEQNTV 78 (933)
T ss_pred hhccCceEEEEEc--------CCCCEEEEecCCCceEEeecCCcccCCchhhc---cCceeEEEeecccceEEeeccceE
Confidence 4789999999999 889999999999999999987663 2222221 233344445556688888888777
Q ss_pred EEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccccccc
Q 048511 105 SVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSAL 176 (351)
Q Consensus 105 ~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 176 (351)
..... +...+-++.+++|+ .+|++ +|.||.|-.|++-++.. ......+. +|..
T Consensus 79 ~~y~fps~~~~~iL~Rftlp~r~~~v~------g~g~~------iaagsdD~~vK~~~~~D--~s~~~~lr-----gh~a 139 (933)
T KOG1274|consen 79 LRYKFPSGEEDTILARFTLPIRDLAVS------GSGKM------IAAGSDDTAVKLLNLDD--SSQEKVLR-----GHDA 139 (933)
T ss_pred EEeeCCCCCccceeeeeeccceEEEEe------cCCcE------EEeecCceeEEEEeccc--cchheeec-----ccCC
Confidence 65543 33345578999999 89999 99999999999999988 55555555 8999
Q ss_pred ceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc-------c-cccEEEEEeecCCCEEEEEeCCCcEEE
Q 048511 177 GFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG-------H-FAAVMDISWSRSSDYLLSVSHDQTTRV 248 (351)
Q Consensus 177 ~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-------~-~~~v~~v~~sp~~~~l~s~~~dg~i~v 248 (351)
+|.++.|+|.+++||+.+.||.|++||+.++. +..++.+ - ...+..++|+|++..|+..+.|+.|.+
T Consensus 140 pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~-----~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkv 214 (933)
T KOG1274|consen 140 PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGI-----LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKV 214 (933)
T ss_pred ceeeeeEcCCCCEEEEEecCceEEEEEcccch-----hhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEE
Confidence 99999999999999999999999999998863 2333322 1 345677999999888888889999999
Q ss_pred EcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511 249 FAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 249 wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 307 (351)
|+...-... + .+ +...+...+.+++|+| +|.|||+++-||.|.|||.+.
T Consensus 215 y~r~~we~~------f-~L-r~~~~ss~~~~~~wsP--nG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 215 YSRKGWELQ------F-KL-RDKLSSSKFSDLQWSP--NGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EccCCceeh------e-ee-cccccccceEEEEEcC--CCcEEeeeccCCcEEEEeccc
Confidence 998766521 1 11 2233444599999999 899999999999999999873
No 139
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=8.7e-23 Score=170.19 Aligned_cols=238 Identities=13% Similarity=0.214 Sum_probs=190.8
Q ss_pred ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc---cceeecc-cccceeeeEeeecCCeEEecCCce
Q 048511 27 GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS---SANTQST-YRKEVISLASYIEGPVLVAGSSSY 102 (351)
Q Consensus 27 ~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~ 102 (351)
.|..-|.++.++ ...++++||+. |.|+|||+..... +..+... ...-++++...++|+.|++|+...
T Consensus 417 ~HGEvVcAvtIS--------~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeas 487 (705)
T KOG0639|consen 417 AHGEVVCAVTIS--------NPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEAS 487 (705)
T ss_pred ccCcEEEEEEec--------CCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccc
Confidence 578888889999 67889999995 7799999975432 1111111 244677889999999999999988
Q ss_pred eEEEEEecc----------ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccc
Q 048511 103 QVSVESLLI----------GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELS 172 (351)
Q Consensus 103 ~~~~~~~~~----------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 172 (351)
.+.+|.... .-.-..+.++.+ +|.++ .+++..||.|.|||+.. ...+..++
T Consensus 488 tlsiWDLAapTprikaeltssapaCyALa~s------pDakv------cFsccsdGnI~vwDLhn--q~~Vrqfq----- 548 (705)
T KOG0639|consen 488 TLSIWDLAAPTPRIKAELTSSAPACYALAIS------PDAKV------CFSCCSDGNIAVWDLHN--QTLVRQFQ----- 548 (705)
T ss_pred eeeeeeccCCCcchhhhcCCcchhhhhhhcC------Cccce------eeeeccCCcEEEEEccc--ceeeeccc-----
Confidence 888887422 122345678888 78888 99999999999999998 66666666
Q ss_pred ccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCC
Q 048511 173 HSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPW 252 (351)
Q Consensus 173 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~ 252 (351)
+|...+.||.++++|..|.+|+-|.+|+.||+++++ + +.+. ...+.|.++.++|++.+|+.|-+++.+.|....
T Consensus 549 GhtDGascIdis~dGtklWTGGlDntvRcWDlregr----q-lqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 549 GHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGR----Q-LQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred CCCCCceeEEecCCCceeecCCCccceeehhhhhhh----h-hhhh-hhhhhheecccCCCccceeeecccCcEEEEecC
Confidence 999999999999999999999999999999999974 1 2221 245689999999999999999999999888775
Q ss_pred CccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhh
Q 048511 253 KNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLK 311 (351)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~ 311 (351)
... ...+..|..-|.++.|.+ -|+++++.+.|..+..|..+ |..+.
T Consensus 623 kp~-----------kyqlhlheScVLSlKFa~--cGkwfvStGkDnlLnawrtPyGasiF 669 (705)
T KOG0639|consen 623 KPE-----------KYQLHLHESCVLSLKFAY--CGKWFVSTGKDNLLNAWRTPYGASIF 669 (705)
T ss_pred Ccc-----------ceeecccccEEEEEEecc--cCceeeecCchhhhhhccCcccccee
Confidence 543 233446788899999999 89999999999999999987 55443
No 140
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.90 E-value=2.9e-22 Score=162.34 Aligned_cols=229 Identities=17% Similarity=0.213 Sum_probs=171.2
Q ss_pred eeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCcee
Q 048511 24 ELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQ 103 (351)
Q Consensus 24 ~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 103 (351)
.+.||+++|..++|+ | .+...|||||.|.+|.||++..+.......
T Consensus 76 ~v~GHt~~vLDi~w~----P---fnD~vIASgSeD~~v~vW~IPe~~l~~~lt--------------------------- 121 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWC----P---FNDCVIASGSEDTKVMVWQIPENGLTRDLT--------------------------- 121 (472)
T ss_pred CccCccccccccccC----c---cCCceeecCCCCceEEEEECCCcccccCcc---------------------------
Confidence 457999999999999 4 567899999999999999998766544333
Q ss_pred EEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEE
Q 048511 104 VSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHW 183 (351)
Q Consensus 104 ~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 183 (351)
.....+.+|...|--++|+| ...+. |++++.|.+|.+||+.+ ++.+.++ .|...|+++.|
T Consensus 122 -epvv~L~gH~rrVg~V~wHP-----tA~NV------Llsag~Dn~v~iWnv~t--geali~l------~hpd~i~S~sf 181 (472)
T KOG0303|consen 122 -EPVVELYGHQRRVGLVQWHP-----TAPNV------LLSAGSDNTVSIWNVGT--GEALITL------DHPDMVYSMSF 181 (472)
T ss_pred -cceEEEeecceeEEEEeecc-----cchhh------HhhccCCceEEEEeccC--Cceeeec------CCCCeEEEEEe
Confidence 22356789999999999998 55667 99999999999999999 6655543 38899999999
Q ss_pred cCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccc-cEEEEEeecCCCEEEEEe---CCCcEEEEcCCCcccccc
Q 048511 184 SPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFA-AVMDISWSRSSDYLLSVS---HDQTTRVFAPWKNVASLM 259 (351)
Q Consensus 184 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~-~v~~v~~sp~~~~l~s~~---~dg~i~vwd~~~~~~~~~ 259 (351)
+.+|.+|++.+.|..|+|||.+++ +.+..-.+|.+ .-..+.|-.++.++.||- .++.+.+||..+.+...
T Consensus 182 n~dGs~l~TtckDKkvRv~dpr~~-----~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~- 255 (472)
T KOG0303|consen 182 NRDGSLLCTTCKDKKVRVIDPRRG-----TVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPI- 255 (472)
T ss_pred ccCCceeeeecccceeEEEcCCCC-----cEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcc-
Confidence 999999999999999999999998 44666667765 344566888888555542 47899999988766211
Q ss_pred CccceEEeccccccccceeEEEEeeeCCCcEE-EEecCCCeEEEEecC--chhhhceeecccccc
Q 048511 260 GENSWHEVARPQVHGHDINCVTIIQGKGNHRF-VSGADEKVARVFEAP--LSFLKTLNHATFQES 321 (351)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~dg~v~vw~~~--~~~~~~~~~~~~~~~ 321 (351)
....+ ..+..|.---|.+ |..++ ++|-.|+.||.|.+. ..++..|+.+...+.
T Consensus 256 ------~~~el-DtSnGvl~PFyD~--dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ep 311 (472)
T KOG0303|consen 256 ------ALQEL-DTSNGVLLPFYDP--DTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEP 311 (472)
T ss_pred ------eeEEe-ccCCceEEeeecC--CCCEEEEEecCCcceEEEEecCCCceeEEecccccCCc
Confidence 11122 1222344444555 55554 567799999999987 334666766654333
No 141
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3.8e-22 Score=163.88 Aligned_cols=224 Identities=17% Similarity=0.250 Sum_probs=164.2
Q ss_pred eeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeE-----EE
Q 048511 32 IRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQV-----SV 106 (351)
Q Consensus 32 V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~ 106 (351)
-.|++|.--..+ .+..|+++|.|..|..|.|||+.-...+.-. +..|...... +.
T Consensus 176 PLC~ewld~~~~-~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~-------------------~~LGs~~sk~~~k~~k~ 235 (463)
T KOG0270|consen 176 PLCIEWLDHGSK-SGGAGNYVAIGTMDPEIEIWDLDIVDAVLPC-------------------VTLGSKASKKKKKKGKR 235 (463)
T ss_pred chhhhhhhcCCC-CCCCcceEEEeccCceeEEeccccccccccc-------------------eeechhhhhhhhhhccc
Confidence 356776511111 2255789999999999999998743322100 0011100000 00
Q ss_pred EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCC
Q 048511 107 ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD 186 (351)
Q Consensus 107 ~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 186 (351)
-....+|++.|..+.|+- ...+. ||+||.|.+|++||+.+ +++...+. .|...|.++.|+|.
T Consensus 236 ~~~~~gHTdavl~Ls~n~-----~~~nV------LaSgsaD~TV~lWD~~~--g~p~~s~~-----~~~k~Vq~l~wh~~ 297 (463)
T KOG0270|consen 236 SNSASGHTDAVLALSWNR-----NFRNV------LASGSADKTVKLWDVDT--GKPKSSIT-----HHGKKVQTLEWHPY 297 (463)
T ss_pred ccccccchHHHHHHHhcc-----cccee------EEecCCCceEEEEEcCC--CCcceehh-----hcCCceeEEEecCC
Confidence 112357999999999983 22345 99999999999999999 88877776 78899999999995
Q ss_pred -CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCC-CEEEEEeCCCcEEEEcCCCccccccCccce
Q 048511 187 -GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSS-DYLLSVSHDQTTRVFAPWKNVASLMGENSW 264 (351)
Q Consensus 187 -~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 264 (351)
..+|++|+.|+++.++|++... ..-..+ ...+.|-.++|.|.. ..++++..||+|+-+|+|+..
T Consensus 298 ~p~~LLsGs~D~~V~l~D~R~~~----~s~~~w-k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~--------- 363 (463)
T KOG0270|consen 298 EPSVLLSGSYDGTVALKDCRDPS----NSGKEW-KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG--------- 363 (463)
T ss_pred CceEEEeccccceEEeeeccCcc----ccCceE-EeccceEEEEecCCCceeEEEecCCceEEeeecCCCC---------
Confidence 5689999999999999998532 112222 245779999999965 457778899999999999875
Q ss_pred EEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCch
Q 048511 265 HEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLS 308 (351)
Q Consensus 265 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 308 (351)
+++...++|..+|.++++++ ....++++++.|+.|++|++...
T Consensus 364 ~~vwt~~AHd~~ISgl~~n~-~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 364 KPVWTLKAHDDEISGLSVNI-QTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred CceeEEEeccCCcceEEecC-CCCcceeeccccceEEEEeecCC
Confidence 26667789999999999987 45789999999999999998743
No 142
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.8e-22 Score=170.51 Aligned_cols=243 Identities=15% Similarity=0.156 Sum_probs=173.0
Q ss_pred CCCCCceEEEEEccC-----CCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccccee
Q 048511 1 MGGLDNKIHLYRGQR-----TGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANT 75 (351)
Q Consensus 1 tg~~dg~i~vw~~~~-----~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~ 75 (351)
+|+.||+|.+|+++. .+.++++.+|.+|.++|.|+++. .++..+++|+.||+|+.|++......-..
T Consensus 311 t~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~--------~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds 382 (577)
T KOG0642|consen 311 TASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP--------SNGEHCYSGGIDGTIRCWNLPPNQDPDDS 382 (577)
T ss_pred EeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEec--------CCceEEEeeccCceeeeeccCCCCCcccc
Confidence 578999999999932 24568899999999999999999 89999999999999999988632211110
Q ss_pred ecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEec
Q 048511 76 QSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQP 155 (351)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 155 (351)
..+ ..+...+.||++.|+.++++ ..... |++++.||++++|+.
T Consensus 383 ~dp-------------------------~vl~~~l~Ghtdavw~l~~s------~~~~~------Llscs~DgTvr~w~~ 425 (577)
T KOG0642|consen 383 YDP-------------------------SVLSGTLLGHTDAVWLLALS------STKDR------LLSCSSDGTVRLWEP 425 (577)
T ss_pred cCc-------------------------chhccceeccccceeeeeec------ccccc------eeeecCCceEEeecc
Confidence 000 01234578999999999999 56666 999999999999998
Q ss_pred cCCCcceEEEEEeccccccccceEEEEEcCCC-CEEEEEeeCCeEEEEEcccCcccCcccccccc-------cccccEEE
Q 048511 156 EKTTGIWMNVVTVGELSHSALGFYGGHWSPDG-RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS-------GHFAAVMD 227 (351)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-------~~~~~v~~ 227 (351)
.. ... .++.. ......-.++.+-... .++++...-+.--++++..... +..+. .....+..
T Consensus 426 ~~--~~~-~~f~~---~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~-----~~~~~s~~~~~~~~~~~in~ 494 (577)
T KOG0642|consen 426 TE--ESP-CTFGE---PKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD-----LLIFESSASPGPRRYPQINK 494 (577)
T ss_pred CC--cCc-cccCC---ccccCCcceEeeccchhHhhhhhcccccccchhhhhhhh-----eeeccccCCCcccccCccce
Confidence 87 332 22221 1222233455553332 2233333333333444433311 11111 11235777
Q ss_pred EEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-
Q 048511 228 ISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP- 306 (351)
Q Consensus 228 v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~- 306 (351)
+.++|...+.+++..|+.|+++|..++. .+.....|...++++++.| ++-+|++++.|+.+++|.+.
T Consensus 495 vVs~~~~~~~~~~hed~~Ir~~dn~~~~----------~l~s~~a~~~svtslai~~--ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 495 VVSHPTADITFTAHEDRSIRFFDNKTGK----------ILHSMVAHKDSVTSLAIDP--NGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred EEecCCCCeeEecccCCceecccccccc----------cchheeeccceecceeecC--CCceEEeecCCceeehhhccc
Confidence 8899999999999999999999998887 7777778988999999999 99999999999999999986
Q ss_pred chhhh
Q 048511 307 LSFLK 311 (351)
Q Consensus 307 ~~~~~ 311 (351)
..+..
T Consensus 563 k~~~~ 567 (577)
T KOG0642|consen 563 KTCVL 567 (577)
T ss_pred hheee
Confidence 44433
No 143
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=4.4e-21 Score=158.23 Aligned_cols=269 Identities=17% Similarity=0.127 Sum_probs=188.5
Q ss_pred CCCCCceEEEEEccCC-CceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeec-c
Q 048511 1 MGGLDNKIHLYRGQRT-GKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQS-T 78 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~-~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~-~ 78 (351)
+|+.-|+|-+||+.++ .....+..+..|.++|.+|.|+ | .+...+++.|.||+|++-|++.......... .
T Consensus 205 ~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~----P---~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~ 277 (498)
T KOG4328|consen 205 VGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFS----P---ANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDT 277 (498)
T ss_pred EccCCCcEEEEecCCCCCccCceEEeccCCccccceEec----C---CChhheeeeccCceeeeeeecchhhHHHhhcCc
Confidence 4788899999999531 2234566778899999999999 4 4667899999999999999987643322221 1
Q ss_pred cccceeeeEeeecCCeEEecCCceeEEEEEe---------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCe
Q 048511 79 YRKEVISLASYIEGPVLVAGSSSYQVSVESL---------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT 149 (351)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~ 149 (351)
.......+.++.+...++.++.-+...++.. +.-|...|.+++++| ....+ |+|++.|++
T Consensus 278 d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP-----~~p~~------laT~s~D~T 346 (498)
T KOG4328|consen 278 DNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNP-----VCPWF------LATASLDQT 346 (498)
T ss_pred cceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCC-----CCchh------eeecccCcc
Confidence 2234456667777777777666665544432 455888999999998 55567 999999999
Q ss_pred EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcc---cCcccCccccccccccc----
Q 048511 150 MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNV---GVDIDNWQPQKVPSGHF---- 222 (351)
Q Consensus 150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~---~~~~~~~~~~~~~~~~~---- 222 (351)
++|||++...++.. .+-....|...|.++.|+|.+-.|++.+.|..|+|||.. .. ..+..++. |.
T Consensus 347 ~kIWD~R~l~~K~s---p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~----~~p~~~I~-Hn~~t~ 418 (498)
T KOG4328|consen 347 AKIWDLRQLRGKAS---PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK----DEPLGTIP-HNNRTG 418 (498)
T ss_pred eeeeehhhhcCCCC---cceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc----CCccceee-ccCccc
Confidence 99999997433321 011123688899999999988889999999999999984 21 12232222 22
Q ss_pred cc--EEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccccccc-ceeE-EEEeeeCCCc-EEEEecCC
Q 048511 223 AA--VMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGH-DINC-VTIIQGKGNH-RFVSGADE 297 (351)
Q Consensus 223 ~~--v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~-~~~~~~~~~~-~l~s~~~d 297 (351)
.+ .....|.|+..++++|..-..|-|+|-..++ .+..+..... .|.+ ..|+| -+. +++.++..
T Consensus 419 RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q----------~v~el~~P~~~tI~~vn~~HP--~~~~~~aG~~s~ 486 (498)
T KOG4328|consen 419 RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ----------MVCELHDPESSTIPSVNEFHP--MRDTLAAGGNSS 486 (498)
T ss_pred ccccchhheeCCCccEEEEeccCcceeEEcCCCCE----------EeeeccCccccccccceeecc--cccceeccCCcc
Confidence 12 3346899999999999998999999987776 3333222221 3444 46888 455 55566688
Q ss_pred CeEEEEecCc
Q 048511 298 KVARVFEAPL 307 (351)
Q Consensus 298 g~v~vw~~~~ 307 (351)
|.|+||.-++
T Consensus 487 Gki~vft~k~ 496 (498)
T KOG4328|consen 487 GKIYVFTNKK 496 (498)
T ss_pred ceEEEEecCC
Confidence 9999997654
No 144
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.89 E-value=7.5e-21 Score=148.29 Aligned_cols=276 Identities=15% Similarity=0.159 Sum_probs=196.6
Q ss_pred CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCC-------CcEEEEecCCCccc----
Q 048511 4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQD-------KVIRIWKLALRGSS---- 72 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d-------g~i~iwd~~~~~~~---- 72 (351)
.|+.|.+.+++..+.......|..|.+.|+.++-+ | .+.+.|+|+-.+ -.+.||.+......
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~----P---~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~ 110 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASS----P---FDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSS 110 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcC----C---CCCceEEEEEeccCCCcceeeEEEEecccccCccccc
Confidence 36777777776633333445677889999999999 3 466778877542 23789998754322
Q ss_pred -----ceeecccccceeeeEeeecCCeEEecCCceeEEEEEe--------------ccccccceEEEEecCCCCCCCCCc
Q 048511 73 -----ANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL--------------LIGHEDWVYSVQWEPPSTAPSDGV 133 (351)
Q Consensus 73 -----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------------~~~h~~~v~~l~~~p~~~~~~~~~ 133 (351)
..+....-..+.++.|.|++..+++-.. ..+.++.. -.+|....++-+|+|. .+++
T Consensus 111 tlE~v~~Ldteavg~i~cvew~Pns~klasm~d-n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspH----Hdgn 185 (370)
T KOG1007|consen 111 TLECVASLDTEAVGKINCVEWEPNSDKLASMDD-NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPH----HDGN 185 (370)
T ss_pred hhhHhhcCCHHHhCceeeEEEcCCCCeeEEecc-CceEEEEcccCcchheeecccccccccceecccccCCC----Cccc
Confidence 2222222446789999999888877552 23322221 1235566788899986 4677
Q ss_pred ccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcccCc
Q 048511 134 SCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDIDNW 212 (351)
Q Consensus 134 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~ 212 (351)
. +++. .|+++..||+++ ......+. ..|...+..+.|+|+.+ +|++++.||.|++||.+..+
T Consensus 186 q------v~tt-~d~tl~~~D~RT--~~~~~sI~----dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk---- 248 (370)
T KOG1007|consen 186 Q------VATT-SDSTLQFWDLRT--MKKNNSIE----DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK---- 248 (370)
T ss_pred e------EEEe-CCCcEEEEEccc--hhhhcchh----hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC----
Confidence 7 6665 688999999998 44333333 36777899999999876 67888899999999998875
Q ss_pred ccccccccccccEEEEEeecCC-CEEEEEeCCCcEEEEcCCCcccccc-----------------Ccc--ceEEeccccc
Q 048511 213 QPQKVPSGHFAAVMDISWSRSS-DYLLSVSHDQTTRVFAPWKNVASLM-----------------GEN--SWHEVARPQV 272 (351)
Q Consensus 213 ~~~~~~~~~~~~v~~v~~sp~~-~~l~s~~~dg~i~vwd~~~~~~~~~-----------------~~~--~~~~~~~~~~ 272 (351)
.+++.+.+|..+|++|.|+|.. +++++++.|..|.+|....-...+. ..+ .-..+.++..
T Consensus 249 ~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde 328 (370)
T KOG1007|consen 249 FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE 328 (370)
T ss_pred ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccc
Confidence 7899999999999999999965 5678999999999997654331110 000 0113445667
Q ss_pred cccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchh
Q 048511 273 HGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSF 309 (351)
Q Consensus 273 ~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~ 309 (351)
|...|++++|+. .|.-+||+-+.||++.|=.++...
T Consensus 329 hEDSVY~~aWSs-adPWiFASLSYDGRviIs~V~r~~ 364 (370)
T KOG1007|consen 329 HEDSVYALAWSS-ADPWIFASLSYDGRVIISSVPRFL 364 (370)
T ss_pred cccceEEEeecc-CCCeeEEEeccCceEEeecCChhh
Confidence 888999999997 578889999999999998877443
No 145
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.89 E-value=6.1e-22 Score=165.60 Aligned_cols=212 Identities=17% Similarity=0.242 Sum_probs=159.4
Q ss_pred ccceeeeEeeecCCeEEecCCceeEEEEEe-------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeec
Q 048511 80 RKEVISLASYIEGPVLVAGSSSYQVSVESL-------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM 146 (351)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~ 146 (351)
...+.++++.|.|..+++|+.++.+.+|.. .......|.+++|+ +.+.. |++.+.
T Consensus 167 tk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys------~Tg~~------iLvvsg 234 (641)
T KOG0772|consen 167 TKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYS------VTGDQ------ILVVSG 234 (641)
T ss_pred ceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeec------CCCCe------EEEEec
Confidence 445678899999999999999999988763 12234579999999 67777 888888
Q ss_pred CCeEEEEeccCCCcceEEEEE-------eccccccccceEEEEEcCCC-CEEEEEeeCCeEEEEEcccCcccCcccccc-
Q 048511 147 DKTMMIWQPEKTTGIWMNVVT-------VGELSHSALGFYGGHWSPDG-RSILAHGYGGAFHLWRNVGVDIDNWQPQKV- 217 (351)
Q Consensus 147 d~~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~- 217 (351)
...++|+|... .++....+ +....+|...++|.+|+|.. ..+++++.||++++||++..+.. .+.++.
T Consensus 235 ~aqakl~DRdG--~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q-~qVik~k 311 (641)
T KOG0772|consen 235 SAQAKLLDRDG--FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ-LQVIKTK 311 (641)
T ss_pred CcceeEEccCC--ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh-eeEEeec
Confidence 88999999775 33333222 22346888999999999976 48899999999999999765321 111111
Q ss_pred -cccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccccccc--ceeEEEEeeeCCCcEEEEe
Q 048511 218 -PSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGH--DINCVTIIQGKGNHRFVSG 294 (351)
Q Consensus 218 -~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~s~ 294 (351)
..+..-.++.++|+|++++||+|+.||+|.+|+....... . .+..-.+|.. .|+|++|++ +|++|++-
T Consensus 312 ~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~-----p--~~~vk~AH~~g~~Itsi~FS~--dg~~LlSR 382 (641)
T KOG0772|consen 312 PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR-----P--VMKVKDAHLPGQDITSISFSY--DGNYLLSR 382 (641)
T ss_pred cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc-----c--ceEeeeccCCCCceeEEEecc--ccchhhhc
Confidence 1233447889999999999999999999999998655421 1 2222345655 799999999 99999999
Q ss_pred cCCCeEEEEecC--chhhhceee
Q 048511 295 ADEKVARVFEAP--LSFLKTLNH 315 (351)
Q Consensus 295 ~~dg~v~vw~~~--~~~~~~~~~ 315 (351)
+.|+.+++||+. .+.+.+..+
T Consensus 383 g~D~tLKvWDLrq~kkpL~~~tg 405 (641)
T KOG0772|consen 383 GFDDTLKVWDLRQFKKPLNVRTG 405 (641)
T ss_pred cCCCceeeeeccccccchhhhcC
Confidence 999999999987 455554443
No 146
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.9e-21 Score=152.34 Aligned_cols=262 Identities=13% Similarity=0.094 Sum_probs=184.2
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.||.|.|||+.+ - ..-..+.+|..+|++++|+ ++|+.|+|+|.|..|++||+..+..+..+.. .
T Consensus 40 vGc~nG~vvI~D~~T-~--~iar~lsaH~~pi~sl~WS--------~dgr~LltsS~D~si~lwDl~~gs~l~rirf--~ 106 (405)
T KOG1273|consen 40 VGCANGRVVIYDFDT-F--RIARMLSAHVRPITSLCWS--------RDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF--D 106 (405)
T ss_pred eeccCCcEEEEEccc-c--chhhhhhccccceeEEEec--------CCCCEeeeecCCceeEEEeccCCCceeEEEc--c
Confidence 488999999999998 3 3556789999999999999 8999999999999999999999987765553 4
Q ss_pred cceeeeEeeecCCeEEec--CCceeEEE------EEeccccc-----cceEEEEecCCCCCCCCCcccCCCceeEEeecC
Q 048511 81 KEVISLASYIEGPVLVAG--SSSYQVSV------ESLLIGHE-----DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD 147 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~--~~~~~~~~------~~~~~~h~-----~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d 147 (351)
.++....|+|-....+++ -....+.+ ...+.... ....+..|. +.|++ +.+|...
T Consensus 107 spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fd------r~g~y------IitGtsK 174 (405)
T KOG1273|consen 107 SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFD------RRGKY------IITGTSK 174 (405)
T ss_pred CccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccccccc------CCCCE------EEEecCc
Confidence 477777777754432222 11111100 00111000 011122344 67777 9999999
Q ss_pred CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcc----cCccccccccc--c
Q 048511 148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDI----DNWQPQKVPSG--H 221 (351)
Q Consensus 148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~----~~~~~~~~~~~--~ 221 (351)
|.+.++|..+ .+++..+++.. ...|.++.++..|+.|+.-+.|..|+.|+++.-.. ....+.+.++. .
T Consensus 175 Gkllv~~a~t--~e~vas~rits----~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVN 248 (405)
T KOG1273|consen 175 GKLLVYDAET--LECVASFRITS----VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVN 248 (405)
T ss_pred ceEEEEecch--heeeeeeeech----heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHh
Confidence 9999999999 77777776422 35789999999999999999999999999863211 01122222221 2
Q ss_pred cccEEEEEeecCCCEEEEEeC-CCcEEEEcCCCccccccCccceEEeccccccc-cceeEEEEeeeCCCcEEEEecCCCe
Q 048511 222 FAAVMDISWSRSSDYLLSVSH-DQTTRVFAPWKNVASLMGENSWHEVARPQVHG-HDINCVTIIQGKGNHRFVSGADEKV 299 (351)
Q Consensus 222 ~~~v~~v~~sp~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~s~~~dg~ 299 (351)
...-.+++|+.+|.|++.++. .-.++||....+. .+..+.+.. .....+.|+| -...+++- ..|.
T Consensus 249 k~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~Gs----------LVKILhG~kgE~l~DV~whp--~rp~i~si-~sg~ 315 (405)
T KOG1273|consen 249 KLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGS----------LVKILHGTKGEELLDVNWHP--VRPIIASI-ASGV 315 (405)
T ss_pred hhhhhheeecCCccEEEeccccceeEEEEecCCcc----------eeeeecCCchhheeeccccc--ceeeeeec-cCCc
Confidence 234567899999999887764 5679999988776 444444443 3478899999 45556665 8899
Q ss_pred EEEEecC
Q 048511 300 ARVFEAP 306 (351)
Q Consensus 300 v~vw~~~ 306 (351)
|++|...
T Consensus 316 v~iw~~~ 322 (405)
T KOG1273|consen 316 VYIWAVV 322 (405)
T ss_pred eEEEEee
Confidence 9999853
No 147
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=1.3e-21 Score=169.78 Aligned_cols=224 Identities=17% Similarity=0.203 Sum_probs=184.6
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|..-|.|+||++.. - .....+.+|...|.|+.|+. |. -..++||+++.|+.|.|+|+...-.+......+.
T Consensus 476 sGDr~GnlrVy~Lq~-l--~~~~~~eAHesEilcLeyS~---p~--~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HS 547 (1080)
T KOG1408|consen 476 SGDRGGNLRVYDLQE-L--EYTCFMEAHESEILCLEYSF---PV--LTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHS 547 (1080)
T ss_pred ccCccCceEEEEehh-h--hhhhheecccceeEEEeecC---ch--hhhHhhhhccCCceEEEEecccccchhhhhcccc
Confidence 467789999999987 3 45567889999999999993 22 3457999999999999999988877777777778
Q ss_pred cceeeeEeeecC--CeEEecCCceeEEEEE--------ecccc-----ccceEEEEecCCCCCCCCCcccCCCceeEEee
Q 048511 81 KEVISLASYIEG--PVLVAGSSSYQVSVES--------LLIGH-----EDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS 145 (351)
Q Consensus 81 ~~~~~~~~~~~~--~~l~~~~~~~~~~~~~--------~~~~h-----~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~ 145 (351)
..++++.|...| ..+++++.+..+.+.. .+..| ...++.+++. |...+ +++++
T Consensus 548 ssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vd------p~~k~------v~t~c 615 (1080)
T KOG1408|consen 548 SSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVD------PTSKL------VVTVC 615 (1080)
T ss_pred cceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeC------CCcce------EEEEe
Confidence 889999998877 5566655555442211 11222 2458899999 67778 99999
Q ss_pred cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccE
Q 048511 146 MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAV 225 (351)
Q Consensus 146 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v 225 (351)
.|+.|+|||++. ++..+.|+-. ..|.+....+...|.|.|+++.+.|+++.+||+.++ .++.++.+|...|
T Consensus 616 QDrnirif~i~s--gKq~k~FKgs--~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg-----EcvA~m~GHsE~V 686 (1080)
T KOG1408|consen 616 QDRNIRIFDIES--GKQVKSFKGS--RDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG-----ECVAQMTGHSEAV 686 (1080)
T ss_pred cccceEEEeccc--cceeeeeccc--ccCCCceEEEEECCCccEEEEeecCCceEEEEeccc-----hhhhhhcCcchhe
Confidence 999999999999 8877777632 356677888999999999999999999999999998 6799999999999
Q ss_pred EEEEeecCCCEEEEEeCCCcEEEEcCCC
Q 048511 226 MDISWSRSSDYLLSVSHDQTTRVFAPWK 253 (351)
Q Consensus 226 ~~v~~sp~~~~l~s~~~dg~i~vwd~~~ 253 (351)
+.+.|.+|.+.|++.+.||.|.||.+..
T Consensus 687 TG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 687 TGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eeeeecccchhheeecCCceEEEEECch
Confidence 9999999999999999999999999854
No 148
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=9.9e-22 Score=163.70 Aligned_cols=207 Identities=14% Similarity=0.157 Sum_probs=165.8
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+..+.|+|||++. + .+.+.+++|.+.|++|.++ ....+||+++..|.|.|..+.++.....+..
T Consensus 96 sgG~~~~Vkiwdl~~-k--l~hr~lkdh~stvt~v~YN--------~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~--- 161 (673)
T KOG4378|consen 96 SGGQSGCVKIWDLRA-K--LIHRFLKDHQSTVTYVDYN--------NTDEYIASVSDGGDIIIHGTKTKQKTTTFTI--- 161 (673)
T ss_pred ccCcCceeeehhhHH-H--HHhhhccCCcceeEEEEec--------CCcceeEEeccCCcEEEEecccCccccceec---
Confidence 488899999999997 4 4566789999999999999 8899999999999999999988765433321
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG 160 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 160 (351)
+....|.-+.|+| ....+ |.+++.+|.|.+||+.. .
T Consensus 162 -------------------------------~sgqsvRll~ys~-----skr~l------L~~asd~G~VtlwDv~g--~ 197 (673)
T KOG4378|consen 162 -------------------------------DSGQSVRLLRYSP-----SKRFL------LSIASDKGAVTLWDVQG--M 197 (673)
T ss_pred -------------------------------CCCCeEEEeeccc-----cccee------eEeeccCCeEEEEeccC--C
Confidence 1233466888996 33445 89999999999999987 3
Q ss_pred ceEEEEEeccccccccceEEEEEcCCC-CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEE
Q 048511 161 IWMNVVTVGELSHSALGFYGGHWSPDG-RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLS 239 (351)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s 239 (351)
.....+ ...|..+...|+|+|.. .+|++.+.|..|.+||.+... ....+. ...+...++|+++|.+|+.
T Consensus 198 sp~~~~----~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~-----s~~~l~-y~~Plstvaf~~~G~~L~a 267 (673)
T KOG4378|consen 198 SPIFHA----SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA-----STDRLT-YSHPLSTVAFSECGTYLCA 267 (673)
T ss_pred Ccccch----hhhccCCcCcceecCCccceEEEecccceEEEeeccccc-----ccceee-ecCCcceeeecCCceEEEe
Confidence 333222 24788899999999965 578899999999999998752 233332 4557899999999999999
Q ss_pred EeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEee
Q 048511 240 VSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQ 284 (351)
Q Consensus 240 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 284 (351)
|...|.|..||++..+. ++....+|...|++++|-+
T Consensus 268 G~s~G~~i~YD~R~~k~---------Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 268 GNSKGELIAYDMRSTKA---------PVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred ecCCceEEEEecccCCC---------CceEeeecccceeEEEeee
Confidence 99999999999998773 6667778999999999998
No 149
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=1.7e-21 Score=160.60 Aligned_cols=222 Identities=18% Similarity=0.217 Sum_probs=167.6
Q ss_pred EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511 20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS 99 (351)
Q Consensus 20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (351)
.....++-|.+.|++++|+ |. .+.+++|+|..-|.|-+||+.+.+....
T Consensus 177 ~~~~v~kv~~~Rit~l~fH----Pt--~~~~lva~GdK~G~VG~Wn~~~~~~d~d------------------------- 225 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFH----PT--ENRKLVAVGDKGGQVGLWNFGTQEKDKD------------------------- 225 (498)
T ss_pred eecceeEecccceEEEEec----cc--CcceEEEEccCCCcEEEEecCCCCCccC-------------------------
Confidence 3345566789999999999 43 3447899999999999999973322110
Q ss_pred CceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceE
Q 048511 100 SSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFY 179 (351)
Q Consensus 100 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~ 179 (351)
-...+..|..+|.++.|+| .+... +.+.|.||+|++-|++. ......+. .......+.
T Consensus 226 ------~v~~f~~hs~~Vs~l~F~P-----~n~s~------i~ssSyDGtiR~~D~~~--~i~e~v~s---~~~d~~~fs 283 (498)
T KOG4328|consen 226 ------GVYLFTPHSGPVSGLKFSP-----ANTSQ------IYSSSYDGTIRLQDFEG--NISEEVLS---LDTDNIWFS 283 (498)
T ss_pred ------ceEEeccCCccccceEecC-----CChhh------eeeeccCceeeeeeecc--hhhHHHhh---cCccceeee
Confidence 1123567999999999998 55667 99999999999999997 32222221 113445677
Q ss_pred EEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCC-EEEEEeCCCcEEEEcCCCccccc
Q 048511 180 GGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSD-YLLSVSHDQTTRVFAPWKNVASL 258 (351)
Q Consensus 180 ~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~~dg~i~vwd~~~~~~~~ 258 (351)
++.|+.+...++.+..=|...+||+++.. .....+.-|...|+.|+++|... +|+|++.|++.+|||++......
T Consensus 284 ~~d~~~e~~~vl~~~~~G~f~~iD~R~~~----s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~ 359 (498)
T KOG4328|consen 284 SLDFSAESRSVLFGDNVGNFNVIDLRTDG----SEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA 359 (498)
T ss_pred eccccCCCccEEEeecccceEEEEeecCC----ccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC
Confidence 88898888888888777899999999875 33455566888999999999654 58999999999999998765322
Q ss_pred cCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 259 MGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
. ++-....|...|.+..|+| .+..|++-+.|..|||||..
T Consensus 360 ----s--p~lst~~HrrsV~sAyFSP--s~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 360 ----S--PFLSTLPHRRSVNSAYFSP--SGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred ----C--cceecccccceeeeeEEcC--CCCceEeeccCCceEEeecc
Confidence 1 1222336888999999999 66669999999999999974
No 150
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=7.6e-21 Score=151.46 Aligned_cols=274 Identities=17% Similarity=0.213 Sum_probs=186.5
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccc--
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTY-- 79 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~-- 79 (351)
+...|+|++||..+ + ..+..+++|...++.+.|. .+ .....+.+|+.||+|++||++.......+....
T Consensus 46 ~lSngsv~lyd~~t-g--~~l~~fk~~~~~~N~vrf~----~~--ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~ 116 (376)
T KOG1188|consen 46 SLSNGSVRLYDKGT-G--QLLEEFKGPPATTNGVRFI----SC--DSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS 116 (376)
T ss_pred EecCCeEEEEeccc-h--hhhheecCCCCcccceEEe----cC--CCCCeeEEeccCCeEEEEEeecchhhhheeccCCC
Confidence 45789999999999 6 4577899999999999998 22 246789999999999999999877655444333
Q ss_pred ccceeeeEeeecCCeEEecCCce----eEEEEE----------eccccccceEEEEecCCCCCCCCCcccCCCceeEEee
Q 048511 80 RKEVISLASYIEGPVLVAGSSSY----QVSVES----------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS 145 (351)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~----------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~ 145 (351)
..+..+++....++++++|.... .+.+|. ....|.+.|+++.|+| .+.++ |++||
T Consensus 117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP-----~~pnl------LlSGS 185 (376)
T KOG1188|consen 117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP-----SDPNL------LLSGS 185 (376)
T ss_pred CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC-----CCCCe------EEeec
Confidence 23666777777888888875432 222322 2456999999999998 66677 99999
Q ss_pred cCCeEEEEeccCCCc--ceEEEEEeccccccccceEEEEEcCCC-CEEEEEeeCCeEEEEEcccCcccCccccccccc--
Q 048511 146 MDKTMMIWQPEKTTG--IWMNVVTVGELSHSALGFYGGHWSPDG-RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG-- 220 (351)
Q Consensus 146 ~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-- 220 (351)
.||.|.+||++.... .....+ .+...|.++.|...+ +.|.+-+...+..+|+++.+....+.....+..
T Consensus 186 vDGLvnlfD~~~d~EeDaL~~vi------N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d 259 (376)
T KOG1188|consen 186 VDGLVNLFDTKKDNEEDALLHVI------NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADD 259 (376)
T ss_pred ccceEEeeecCCCcchhhHHHhh------cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhh
Confidence 999999999986311 111222 355679999998776 568888999999999998764321111111110
Q ss_pred -----ccccEEEEEeec-CCCEEEEEeC-CCcEEEEcCCCccccccCccceEEeccccc-cccceeEEEEeeeCCCcEEE
Q 048511 221 -----HFAAVMDISWSR-SSDYLLSVSH-DQTTRVFAPWKNVASLMGENSWHEVARPQV-HGHDINCVTIIQGKGNHRFV 292 (351)
Q Consensus 221 -----~~~~v~~v~~sp-~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~ 292 (351)
.-..+-.. .+| +...++.++. -+...++-+..... ....+.+..+++ |..-|+++.|.. .+.++.
T Consensus 260 ~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s----~~~~~~~a~l~g~~~eiVR~i~~~~--~~~~l~ 332 (376)
T KOG1188|consen 260 LRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSS----GSLLTEPAILQGGHEEIVRDILFDV--KNDVLY 332 (376)
T ss_pred HHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeeccc----ccccCccccccCCcHHHHHHHhhhc--ccceee
Confidence 01112111 223 3445555544 45666665542110 113345566666 555588888887 789999
Q ss_pred EecCCCeEEEEecCch
Q 048511 293 SGADEKVARVFEAPLS 308 (351)
Q Consensus 293 s~~~dg~v~vw~~~~~ 308 (351)
+||+||.+.+|..+..
T Consensus 333 TGGEDG~l~~Wk~~da 348 (376)
T KOG1188|consen 333 TGGEDGLLQAWKVEDA 348 (376)
T ss_pred ccCCCceEEEEecCCc
Confidence 9999999999996533
No 151
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.88 E-value=1.3e-21 Score=150.56 Aligned_cols=251 Identities=12% Similarity=0.099 Sum_probs=172.9
Q ss_pred EEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCC
Q 048511 21 RACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSS 100 (351)
Q Consensus 21 ~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 100 (351)
+...+++|.+.|+++.|. .++ +|.+|..-|.|++|++.+..............+..+..-|+ ..+.+-++
T Consensus 6 P~fvLRp~~~~v~s~~fq--------a~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgR 75 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQ--------ANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGR 75 (323)
T ss_pred CeeEeccccchheehhhc--------cch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCC
Confidence 456778999999999998 544 59999999999999999887655544333334444443333 12222222
Q ss_pred ceeEEEEEe-------------------------------------------------------------ccccccceEE
Q 048511 101 SYQVSVESL-------------------------------------------------------------LIGHEDWVYS 119 (351)
Q Consensus 101 ~~~~~~~~~-------------------------------------------------------------~~~h~~~v~~ 119 (351)
+..+.+|.. -.+..+.+.|
T Consensus 76 d~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc 155 (323)
T KOG0322|consen 76 DPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMC 155 (323)
T ss_pred CceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceee
Confidence 222111110 0011222333
Q ss_pred EEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEE-----eccccccccceEEEEEcCCCCEEEEEe
Q 048511 120 VQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVT-----VGELSHSALGFYGGHWSPDGRSILAHG 194 (351)
Q Consensus 120 l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~i~~i~~~~~~~~l~~~~ 194 (351)
..+.- . |....+++.|.++|.+.+||+.+ +..+..++ ......|..++.++.+.+.-..=++++
T Consensus 156 ~~~~~-----~----c~s~~lllaGyEsghvv~wd~S~--~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgg 224 (323)
T KOG0322|consen 156 QDKDH-----A----CGSTFLLLAGYESGHVVIWDLST--GDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGG 224 (323)
T ss_pred eeccc-----c----ccceEEEEEeccCCeEEEEEccC--CceeeccccccccccchhhccCcceeeeechhhcCCcCCC
Confidence 33221 1 33345688899999999999998 42222111 112346788999999998777778888
Q ss_pred eCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccc
Q 048511 195 YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHG 274 (351)
Q Consensus 195 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 274 (351)
.+..+..|+++.... ..+....+.-....|..+...||++++||++.|+.||||..++.. ++..+..|.
T Consensus 225 a~dkl~~~Sl~~s~g-slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~----------pLAVLkyHs 293 (323)
T KOG0322|consen 225 ADDKLVMYSLNHSTG-SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN----------PLAVLKYHS 293 (323)
T ss_pred ccccceeeeeccccC-cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC----------chhhhhhhh
Confidence 888999999865310 012222233334568889999999999999999999999998887 888889999
Q ss_pred cceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511 275 HDINCVTIIQGKGNHRFVSGADEKVARVFEA 305 (351)
Q Consensus 275 ~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~ 305 (351)
..|++++|+| +..++|+++.|++|.+|++
T Consensus 294 agvn~vAfsp--d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 294 AGVNAVAFSP--DCELMAAASKDARISLWKL 322 (323)
T ss_pred cceeEEEeCC--CCchhhhccCCceEEeeec
Confidence 9999999999 8899999999999999985
No 152
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=1.7e-20 Score=156.35 Aligned_cols=270 Identities=17% Similarity=0.167 Sum_probs=196.0
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecC--CceeEEEeeCCcccCCCCCcc-EEEEeeCCCcEEEEecCCCcc-cceeec
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHT--DWIRSLDFSLPVCTSGEAISI-LLVSSSQDKVIRIWKLALRGS-SANTQS 77 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~--~~V~~l~~~~~~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~-~~~~~~ 77 (351)
++...++++||+.. -. ....+..|+ -.+.++.|. .... .+++.+.|..|++|.-..... +.....
T Consensus 8 aS~gd~~kl~D~s~-~~--~~~~~~~~t~~pg~~s~~w~--------~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k 76 (673)
T KOG4378|consen 8 ASTGDKTKLSDFSD-LE--TKSEYVHQTAEPGDFSFNWQ--------RRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRK 76 (673)
T ss_pred eccCCceEEeeccc-cc--CccccccCCCCCcceeeecc--------ccceEEEeecCCceeEEEecccCCCCccceeec
Confidence 45566899999876 21 112222222 248899998 3332 233446788999997654311 222222
Q ss_pred ccccceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCe
Q 048511 78 TYRKEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT 149 (351)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~ 149 (351)
.......|++......++++|+..+.+++|. .+++|.+.|+++.++ ....+ ||+++..|.
T Consensus 77 ~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN------~~Dey------iAsvs~gGd 144 (673)
T KOG4378|consen 77 LTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYN------NTDEY------IASVSDGGD 144 (673)
T ss_pred cccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEec------CCcce------eEEeccCCc
Confidence 2233455666666778999999988887764 478999999999999 77888 999999999
Q ss_pred EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEE
Q 048511 150 MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDI 228 (351)
Q Consensus 150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v 228 (351)
|.|..+.+ +....++.. .....+.-+.|+|..+ +|.+++.+|.|.+||+.... ........|..+...|
T Consensus 145 iiih~~~t--~~~tt~f~~----~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s----p~~~~~~~HsAP~~gi 214 (673)
T KOG4378|consen 145 IIIHGTKT--KQKTTTFTI----DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS----PIFHASEAHSAPCRGI 214 (673)
T ss_pred EEEEeccc--Cccccceec----CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC----cccchhhhccCCcCcc
Confidence 99999998 555555541 2234567899999877 45667888999999998764 3345566799999999
Q ss_pred EeecC-CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-
Q 048511 229 SWSRS-SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP- 306 (351)
Q Consensus 229 ~~sp~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~- 306 (351)
||+|. ..+|++.+.|+.|.+||++.... ...+ ....+.+.++|.+ +|.+|++|...|.|..||+.
T Consensus 215 cfspsne~l~vsVG~Dkki~~yD~~s~~s----------~~~l-~y~~Plstvaf~~--~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 215 CFSPSNEALLVSVGYDKKINIYDIRSQAS----------TDRL-TYSHPLSTVAFSE--CGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred eecCCccceEEEecccceEEEeecccccc----------ccee-eecCCcceeeecC--CceEEEeecCCceEEEEeccc
Confidence 99995 56688999999999999987652 2222 3456789999999 99999999999999999987
Q ss_pred -chhhhceeecc
Q 048511 307 -LSFLKTLNHAT 317 (351)
Q Consensus 307 -~~~~~~~~~~~ 317 (351)
...+.++..|.
T Consensus 282 ~k~Pv~v~sah~ 293 (673)
T KOG4378|consen 282 TKAPVAVRSAHD 293 (673)
T ss_pred CCCCceEeeecc
Confidence 45566665554
No 153
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=8.1e-21 Score=149.83 Aligned_cols=226 Identities=15% Similarity=0.157 Sum_probs=165.8
Q ss_pred eeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEecc
Q 048511 32 IRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLI 111 (351)
Q Consensus 32 V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 111 (351)
-.|+.|+ +.|.+||.|..||.|.|||+.+.... +.+.
T Consensus 26 a~~~~Fs--------~~G~~lAvGc~nG~vvI~D~~T~~ia-----------------------------------r~ls 62 (405)
T KOG1273|consen 26 AECCQFS--------RWGDYLAVGCANGRVVIYDFDTFRIA-----------------------------------RMLS 62 (405)
T ss_pred cceEEec--------cCcceeeeeccCCcEEEEEccccchh-----------------------------------hhhh
Confidence 6899999 88999999999999999999886522 3467
Q ss_pred ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccc--------------------
Q 048511 112 GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGEL-------------------- 171 (351)
Q Consensus 112 ~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-------------------- 171 (351)
+|..+|++++|+ ++|+. |+++|.|..|.+||+.. +.+++.+.+...
T Consensus 63 aH~~pi~sl~WS------~dgr~------LltsS~D~si~lwDl~~--gs~l~rirf~spv~~~q~hp~k~n~~va~~~~ 128 (405)
T KOG1273|consen 63 AHVRPITSLCWS------RDGRK------LLTSSRDWSIKLWDLLK--GSPLKRIRFDSPVWGAQWHPRKRNKCVATIME 128 (405)
T ss_pred ccccceeEEEec------CCCCE------eeeecCCceeEEEeccC--CCceeEEEccCccceeeeccccCCeEEEEEec
Confidence 899999999999 89999 99999999999999998 555555443210
Q ss_pred ----------c-----------ccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccccc-ccEEEEE
Q 048511 172 ----------S-----------HSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHF-AAVMDIS 229 (351)
Q Consensus 172 ----------~-----------~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~-~~v~~v~ 229 (351)
. .......+..|++.|+++++|...|.+.+||..+- +++..++-.. ..|..+.
T Consensus 129 ~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~-----e~vas~rits~~~IK~I~ 203 (405)
T KOG1273|consen 129 ESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL-----ECVASFRITSVQAIKQII 203 (405)
T ss_pred CCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh-----eeeeeeeechheeeeEEE
Confidence 0 00001112247778999999999999999999986 5566665544 6788999
Q ss_pred eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccc--cccceeEEEEeeeCCCcEEEEecC-CCeEEEEecC
Q 048511 230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQV--HGHDINCVTIIQGKGNHRFVSGAD-EKVARVFEAP 306 (351)
Q Consensus 230 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~l~s~~~-dg~v~vw~~~ 306 (351)
++..|+.|+.-+.|+.||.|+++.-..... .....+..+++. ....=.+++|+. +|.++++++. -..++||.-.
T Consensus 204 ~s~~g~~liiNtsDRvIR~ye~~di~~~~r-~~e~e~~~K~qDvVNk~~Wk~ccfs~--dgeYv~a~s~~aHaLYIWE~~ 280 (405)
T KOG1273|consen 204 VSRKGRFLIINTSDRVIRTYEISDIDDEGR-DGEVEPEHKLQDVVNKLQWKKCCFSG--DGEYVCAGSARAHALYIWEKS 280 (405)
T ss_pred EeccCcEEEEecCCceEEEEehhhhcccCc-cCCcChhHHHHHHHhhhhhhheeecC--CccEEEeccccceeEEEEecC
Confidence 999999999999999999999863221000 001111111111 112246788888 8999988874 4579999977
Q ss_pred -chhhhceeeccccccc
Q 048511 307 -LSFLKTLNHATFQESS 322 (351)
Q Consensus 307 -~~~~~~~~~~~~~~~~ 322 (351)
|.+++.|.+-.+...-
T Consensus 281 ~GsLVKILhG~kgE~l~ 297 (405)
T KOG1273|consen 281 IGSLVKILHGTKGEELL 297 (405)
T ss_pred CcceeeeecCCchhhee
Confidence 9999999887755544
No 154
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=8.8e-20 Score=152.43 Aligned_cols=242 Identities=14% Similarity=0.159 Sum_probs=180.9
Q ss_pred EeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCce
Q 048511 23 CELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSY 102 (351)
Q Consensus 23 ~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 102 (351)
....+|.+..+.++.+ |+.+.++|++.|+.+++|+ ..+.. .......+..++.|+|.| .+++|...+
T Consensus 362 ~~v~gh~delwgla~h--------ps~~q~~T~gqdk~v~lW~--~~k~~--wt~~~~d~~~~~~fhpsg-~va~Gt~~G 428 (626)
T KOG2106|consen 362 LTVQGHGDELWGLATH--------PSKNQLLTCGQDKHVRLWN--DHKLE--WTKIIEDPAECADFHPSG-VVAVGTATG 428 (626)
T ss_pred EEEEecccceeeEEcC--------CChhheeeccCcceEEEcc--CCcee--EEEEecCceeEeeccCcc-eEEEeeccc
Confidence 3557899999999999 8899999999999999999 22222 222334588899999999 888888777
Q ss_pred eEEEEEe-------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc
Q 048511 103 QVSVESL-------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA 175 (351)
Q Consensus 103 ~~~~~~~-------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 175 (351)
..-++.. +.....++++++|+ |+|.+ ||.|+.|+.|+||.+..........-+ .+.
T Consensus 429 ~w~V~d~e~~~lv~~~~d~~~ls~v~ys------p~G~~------lAvgs~d~~iyiy~Vs~~g~~y~r~~k-----~~g 491 (626)
T KOG2106|consen 429 RWFVLDTETQDLVTIHTDNEQLSVVRYS------PDGAF------LAVGSHDNHIYIYRVSANGRKYSRVGK-----CSG 491 (626)
T ss_pred eEEEEecccceeEEEEecCCceEEEEEc------CCCCE------EEEecCCCeEEEEEECCCCcEEEEeee-----ecC
Confidence 6644322 11226789999999 89999 999999999999999874333322222 333
Q ss_pred cceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc---------------cccccEEEEEeecCCCEEEEE
Q 048511 176 LGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS---------------GHFAAVMDISWSRSSDYLLSV 240 (351)
Q Consensus 176 ~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~---------------~~~~~v~~v~~sp~~~~l~s~ 240 (351)
.+|+.+.|++|++++.+-+.|-.|..|....-. .....+.++ .+...|..++-+.+++++++|
T Consensus 492 s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~--~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~g 569 (626)
T KOG2106|consen 492 SPITHLDWSSDSQFLVSNSGDYEILYWKPSECK--QITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASG 569 (626)
T ss_pred ceeEEeeecCCCceEEeccCceEEEEEccccCc--ccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhcc
Confidence 789999999999999999999999999443221 111111111 234455666667778899999
Q ss_pred eCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511 241 SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA 305 (351)
Q Consensus 241 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~ 305 (351)
...|.|++|...-.+.. .+...+.+|+.-|++++|.. +...+++.+.|..|..|++
T Consensus 570 dd~g~v~lf~yPc~s~r-------A~~he~~ghs~~vt~V~Fl~--~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 570 DDFGKVHLFSYPCSSPR-------APSHEYGGHSSHVTNVAFLC--KDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred ccCceEEEEccccCCCc-------ccceeeccccceeEEEEEee--CCceEEecCCCceEEEEEe
Confidence 99999999987654421 24556678999999999998 6777777779999999985
No 155
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3.5e-19 Score=153.74 Aligned_cols=241 Identities=16% Similarity=0.153 Sum_probs=182.8
Q ss_pred CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc-eeecccccceeeeEeeecCCeEEecCCceeEEEE
Q 048511 29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA-NTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVE 107 (351)
Q Consensus 29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 107 (351)
..+|.+|+|+ ...+.||.+-.||.|.+|++...-... .+..+....+-+++|+ ++..|.+.+.++.+..|
T Consensus 25 Ps~I~slA~s--------~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~Ew 95 (691)
T KOG2048|consen 25 PSEIVSLAYS--------HKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEW 95 (691)
T ss_pred ccceEEEEEe--------ccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEE
Confidence 5789999999 778889999999999999998754433 3344556677889999 55555555566666555
Q ss_pred Ee--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceE
Q 048511 108 SL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFY 179 (351)
Q Consensus 108 ~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~ 179 (351)
.. +....+.|++++.+ +.+.. ++.|+.||.+..++... +....... +...++.|.
T Consensus 96 Dl~~lk~~~~~d~~gg~IWsiai~------p~~~~------l~IgcddGvl~~~s~~p--~~I~~~r~---l~rq~sRvL 158 (691)
T KOG2048|consen 96 DLHTLKQKYNIDSNGGAIWSIAIN------PENTI------LAIGCDDGVLYDFSIGP--DKITYKRS---LMRQKSRVL 158 (691)
T ss_pred ecccCceeEEecCCCcceeEEEeC------Cccce------EEeecCCceEEEEecCC--ceEEEEee---cccccceEE
Confidence 43 34456789999999 56677 99999999777777665 44333222 234568899
Q ss_pred EEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccc--ccccc-cccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccc
Q 048511 180 GGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQP--QKVPS-GHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVA 256 (351)
Q Consensus 180 ~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~-~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~ 256 (351)
++.|+|++..+++|+.||.|++||...+....... +-.+. ....-|++|.|-.++ .|++|..-|+|.+||...+.
T Consensus 159 slsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gT- 236 (691)
T KOG2048|consen 159 SLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGT- 236 (691)
T ss_pred EEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcc-
Confidence 99999999999999999999999998764211000 01111 133458888888665 68999999999999998887
Q ss_pred cccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCch
Q 048511 257 SLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLS 308 (351)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 308 (351)
.+.....|...|.|++..+ ++.++++++.|+.|..|...++
T Consensus 237 ---------LiqS~~~h~adVl~Lav~~--~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 237 ---------LIQSHSCHDADVLALAVAD--NEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred ---------hhhhhhhhhcceeEEEEcC--CCCeEEEccCCCceEEEEecCC
Confidence 6777788999999999998 8899999999999999987643
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=5.4e-21 Score=151.56 Aligned_cols=240 Identities=17% Similarity=0.195 Sum_probs=170.5
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK 81 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~ 81 (351)
|+.-|.|+|.|+.. + +....+.+|..+|+.+.+. | .+.++++++|.|.+||+|++++..++..+
T Consensus 111 ~G~~GvIrVid~~~-~--~~~~~~~ghG~sINeik~~----p---~~~qlvls~SkD~svRlwnI~~~~Cv~Vf------ 174 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVS-G--QCSKNYRGHGGSINEIKFH----P---DRPQLVLSASKDHSVRLWNIQTDVCVAVF------ 174 (385)
T ss_pred ecceeEEEEEecch-h--hhccceeccCccchhhhcC----C---CCCcEEEEecCCceEEEEeccCCeEEEEe------
Confidence 56789999999998 6 5567899999999999999 3 35579999999999999999988765433
Q ss_pred ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc-
Q 048511 82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG- 160 (351)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~- 160 (351)
.-+.||.+.|.++.|+ .++.. |++++.|.++++|++...+-
T Consensus 175 --------------------------GG~egHrdeVLSvD~~------~~gd~------i~ScGmDhslk~W~l~~~~f~ 216 (385)
T KOG1034|consen 175 --------------------------GGVEGHRDEVLSVDFS------LDGDR------IASCGMDHSLKLWRLNVKEFK 216 (385)
T ss_pred --------------------------cccccccCcEEEEEEc------CCCCe------eeccCCcceEEEEecChhHHh
Confidence 3357899999999999 78889 99999999999999984110
Q ss_pred ---ceE----------------EEEEe-ccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc-----C----
Q 048511 161 ---IWM----------------NVVTV-GELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID-----N---- 211 (351)
Q Consensus 161 ---~~~----------------~~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-----~---- 211 (351)
+.. ..+.. .....|...|-|+.|- |.++++-+-++.|..|....-+.. .
T Consensus 217 ~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~ 294 (385)
T KOG1034|consen 217 NKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESA 294 (385)
T ss_pred hhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccc
Confidence 000 00000 0112344445555553 578899899999999987211100 0
Q ss_pred cccccccccccccEEEEE--eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCc
Q 048511 212 WQPQKVPSGHFAAVMDIS--WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNH 289 (351)
Q Consensus 212 ~~~~~~~~~~~~~v~~v~--~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 289 (351)
...+..+.-....|+-+. |.|-+++||.|...|.|++||+++.... ....+.. ...+..|...+|+. |+.
T Consensus 295 ~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~-----~~ttl~~-s~~~~tVRQ~sfS~--dgs 366 (385)
T KOG1034|consen 295 TTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP-----KCTTLTH-SKSGSTVRQTSFSR--DGS 366 (385)
T ss_pred eeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc-----cCceEEe-ccccceeeeeeecc--cCc
Confidence 011222333344555554 4566789999999999999999887621 1111111 12235599999998 999
Q ss_pred EEEEecCCCeEEEEec
Q 048511 290 RFVSGADEKVARVFEA 305 (351)
Q Consensus 290 ~l~s~~~dg~v~vw~~ 305 (351)
+|+...+|+.|--||.
T Consensus 367 ~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 367 ILVLVCDDGTVWRWDR 382 (385)
T ss_pred EEEEEeCCCcEEEEEe
Confidence 9999999999999984
No 157
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.85 E-value=3.2e-20 Score=159.28 Aligned_cols=247 Identities=18% Similarity=0.292 Sum_probs=174.7
Q ss_pred CCCceEEEEEccCCCceEE--EEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 3 GLDNKIHLYRGQRTGKFVR--ACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 3 ~~dg~i~vw~~~~~~~~~~--~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+..|.|-||++...|++.- +-.+. ....|+.+.|. | -+...||.++.||.|++|.+..+........
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~Wd----P---FD~~rLAVa~ddg~i~lWr~~a~gl~e~~~t--- 668 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWD----P---FDDERLAVATDDGQINLWRLTANGLPENEMT--- 668 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccccc-cCceeeecccC----C---CChHHeeecccCceEEEEEeccCCCCcccCC---
Confidence 4578999999988665411 11222 34579999999 4 5788999999999999999987655433322
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG 160 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 160 (351)
....+.+|...|+++.|+| -.... |++++.|-+|++||++. .
T Consensus 669 -------------------------Pe~~lt~h~eKI~slRfHP-----LAadv------La~asyd~Ti~lWDl~~--~ 710 (1012)
T KOG1445|consen 669 -------------------------PEKILTIHGEKITSLRFHP-----LAADV------LAVASYDSTIELWDLAN--A 710 (1012)
T ss_pred -------------------------cceeeecccceEEEEEecc-----hhhhH------hhhhhccceeeeeehhh--h
Confidence 2245788999999999998 55667 99999999999999998 5
Q ss_pred ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccccc-ccEEEEEeecCCCEEEE
Q 048511 161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHF-AAVMDISWSRSSDYLLS 239 (351)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~-~~v~~v~~sp~~~~l~s 239 (351)
.....+. +|...|..++|+|+|+.+++.+.||+|++|+.+.++ ++++.-.+.. ..--.|.|.-+|+++++
T Consensus 711 ~~~~~l~-----gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e----~pv~Eg~gpvgtRgARi~wacdgr~viv 781 (1012)
T KOG1445|consen 711 KLYSRLV-----GHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE----QPVYEGKGPVGTRGARILWACDGRIVIV 781 (1012)
T ss_pred hhhheec-----cCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC----CccccCCCCccCcceeEEEEecCcEEEE
Confidence 5555555 899999999999999999999999999999998875 4555443322 22345788889999887
Q ss_pred EeCC----CcEEEEcCCCccccccCccceEEeccccccccc-eeEEEEeeeCCCcEEEEecCCCeEEEEecC--chhhhc
Q 048511 240 VSHD----QTTRVFAPWKNVASLMGENSWHEVARPQVHGHD-INCVTIIQGKGNHRFVSGADEKVARVFEAP--LSFLKT 312 (351)
Q Consensus 240 ~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~--~~~~~~ 312 (351)
.+.| +.|.+||.+..... .+........+ +.--.+.+ +.+-+|++|-.|..|.+|.+- ..++-.
T Consensus 782 ~Gfdk~SeRQv~~Y~Aq~l~~~--------pl~t~~lDvaps~LvP~YD~-Ds~~lfltGKGD~~v~~yEv~~esPy~lp 852 (1012)
T KOG1445|consen 782 VGFDKSSERQVQMYDAQTLDLR--------PLYTQVLDVAPSPLVPHYDY-DSNVLFLTGKGDRFVNMYEVIYESPYLLP 852 (1012)
T ss_pred ecccccchhhhhhhhhhhccCC--------cceeeeecccCccccccccC-CCceEEEecCCCceEEEEEecCCCceeee
Confidence 7765 57888887655411 11111000000 10111222 346678899999999999964 444444
Q ss_pred eeec
Q 048511 313 LNHA 316 (351)
Q Consensus 313 ~~~~ 316 (351)
+..+
T Consensus 853 l~~f 856 (1012)
T KOG1445|consen 853 LAPF 856 (1012)
T ss_pred cccc
Confidence 4443
No 158
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.3e-19 Score=149.86 Aligned_cols=239 Identities=13% Similarity=0.099 Sum_probs=183.4
Q ss_pred CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccccee-ecccccceeeeEeeecCC-eEEecCCceeEEE
Q 048511 29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANT-QSTYRKEVISLASYIEGP-VLVAGSSSYQVSV 106 (351)
Q Consensus 29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~ 106 (351)
.+.|++|.|+ |...+|++|+.|++++||.+......... ......++.++.|.|+|. .+++++.......
T Consensus 213 ~~~I~sv~FH--------p~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ys 284 (514)
T KOG2055|consen 213 HGGITSVQFH--------PTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYS 284 (514)
T ss_pred cCCceEEEec--------CCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEE
Confidence 3589999999 88899999999999999999865433211 112255788999999999 7777776655544
Q ss_pred EEe----------ccccc-cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc
Q 048511 107 ESL----------LIGHE-DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA 175 (351)
Q Consensus 107 ~~~----------~~~h~-~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 175 (351)
+.. +.++. ..+....++ +++++ |+..+..|.|.+....+ ++++..++ ..
T Consensus 285 yDle~ak~~k~~~~~g~e~~~~e~FeVS------hd~~f------ia~~G~~G~I~lLhakT--~eli~s~K------ie 344 (514)
T KOG2055|consen 285 YDLETAKVTKLKPPYGVEEKSMERFEVS------HDSNF------IAIAGNNGHIHLLHAKT--KELITSFK------IE 344 (514)
T ss_pred eeccccccccccCCCCcccchhheeEec------CCCCe------EEEcccCceEEeehhhh--hhhhheee------ec
Confidence 432 33343 346677788 78889 99999999999999998 88887776 35
Q ss_pred cceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccc-cEEEEEeecCCCEEEEEeCCCcEEEEcCCCc
Q 048511 176 LGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFA-AVMDISWSRSSDYLLSVSHDQTTRVFAPWKN 254 (351)
Q Consensus 176 ~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~-~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~ 254 (351)
+.|..++|+.+++.|++++.+|.|.+||++.. .+++.+....+ .-+++|.++++.|||+|+..|.|.|||..+.
T Consensus 345 G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~-----~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~ 419 (514)
T KOG2055|consen 345 GVVSDFTFSSDSKELLASGGTGEVYVWNLRQN-----SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSC 419 (514)
T ss_pred cEEeeEEEecCCcEEEEEcCCceEEEEecCCc-----ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchh
Confidence 67899999999999999999999999999987 45666553221 2356788899999999999999999997654
Q ss_pred cccccCccceEEeccccccccceeEEEEeeeCCCcEEEEec--CCCeEEEEecC
Q 048511 255 VASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGA--DEKVARVFEAP 306 (351)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~--~dg~v~vw~~~ 306 (351)
.. ....+++..+..-...|++++|++ +.++||.+| .+..+|+-.++
T Consensus 420 ~~----s~~PkPik~~dNLtt~Itsl~Fn~--d~qiLAiaS~~~knalrLVHvP 467 (514)
T KOG2055|consen 420 FA----STNPKPIKTVDNLTTAITSLQFNH--DAQILAIASRVKKNALRLVHVP 467 (514)
T ss_pred hc----cCCCCchhhhhhhheeeeeeeeCc--chhhhhhhhhccccceEEEecc
Confidence 32 123345555555566799999999 999998887 56788888876
No 159
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.85 E-value=2.9e-19 Score=141.64 Aligned_cols=250 Identities=15% Similarity=0.204 Sum_probs=177.1
Q ss_pred ceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc------------eeecccccceeeeEe-------eec
Q 048511 31 WIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA------------NTQSTYRKEVISLAS-------YIE 91 (351)
Q Consensus 31 ~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~------------~~~~~~~~~~~~~~~-------~~~ 91 (351)
-...+.|+ |+|..|++-+.|..+++|++....... ...-.....+....| .|+
T Consensus 51 f~kgckWS--------PDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~ 122 (406)
T KOG2919|consen 51 FLKGCKWS--------PDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPS 122 (406)
T ss_pred hhccceeC--------CCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCc
Confidence 35678899 899999999999999999985321111 111111333344443 356
Q ss_pred CCeEEecCCceeEEEEEeccc----------ccc---ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCC
Q 048511 92 GPVLVAGSSSYQVSVESLLIG----------HED---WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKT 158 (351)
Q Consensus 92 ~~~l~~~~~~~~~~~~~~~~~----------h~~---~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 158 (351)
..++++..++..|.+|..+.| |.+ ...+++|+ +||.. |..| ..+.|+++|+...
T Consensus 123 t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs------~DGeq------lfaG-ykrcirvFdt~Rp 189 (406)
T KOG2919|consen 123 TNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFS------PDGEQ------LFAG-YKRCIRVFDTSRP 189 (406)
T ss_pred cceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEec------CCCCe------Eeec-ccceEEEeeccCC
Confidence 778888888888888876554 222 34689999 79998 7665 6678999999432
Q ss_pred CcceEEEE--EeccccccccceEEEEEcCCC-CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCC
Q 048511 159 TGIWMNVV--TVGELSHSALGFYGGHWSPDG-RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSD 235 (351)
Q Consensus 159 ~~~~~~~~--~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 235 (351)
|...... ......+..+-|.+++|+|.. +.+++++...++-||.-... .++..+-+|.+.|+.++|.++|+
T Consensus 190 -Gr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-----~pl~llggh~gGvThL~~~edGn 263 (406)
T KOG2919|consen 190 -GRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-----RPLQLLGGHGGGVTHLQWCEDGN 263 (406)
T ss_pred -CCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-----CceeeecccCCCeeeEEeccCcC
Confidence 2211111 111112345678899999955 58999999999999987775 67888889999999999999999
Q ss_pred EEEEEeC-CCcEEEEcCCCccccccCccceEEecccccccc-ceeEEEEeeeCCCcEEEEecCCCeEEEEecC--chhhh
Q 048511 236 YLLSVSH-DQTTRVFAPWKNVASLMGENSWHEVARPQVHGH-DINCVTIIQGKGNHRFVSGADEKVARVFEAP--LSFLK 311 (351)
Q Consensus 236 ~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~--~~~~~ 311 (351)
.|++|+. |-.|..||++.... ++..+..|.. .=..|-|.-.+++++|++|+.||.|++||++ ++...
T Consensus 264 ~lfsGaRk~dkIl~WDiR~~~~---------pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~s 334 (406)
T KOG2919|consen 264 KLFSGARKDDKILCWDIRYSRD---------PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVS 334 (406)
T ss_pred eecccccCCCeEEEEeehhccc---------hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccc
Confidence 9999875 77899999988762 4455555544 3345555544489999999999999999987 55344
Q ss_pred ceeec
Q 048511 312 TLNHA 316 (351)
Q Consensus 312 ~~~~~ 316 (351)
.+..+
T Consensus 335 v~~~~ 339 (406)
T KOG2919|consen 335 VTGNY 339 (406)
T ss_pred ccccc
Confidence 44333
No 160
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.85 E-value=1.2e-19 Score=143.79 Aligned_cols=226 Identities=17% Similarity=0.223 Sum_probs=169.0
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCc---eeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDW---IRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST 78 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~---V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~ 78 (351)
.+.|.-|++||..+ |++........|.+. -.+++|+ ++|..|+.| ....|+++|+............
T Consensus 129 ssr~~PIh~wdaft-G~lraSy~~ydh~de~taAhsL~Fs--------~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFT-GKLRASYRAYDHQDEYTAAHSLQFS--------PDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred ccccCceeeeeccc-cccccchhhhhhHHhhhhheeEEec--------CCCCeEeec-ccceEEEeeccCCCCCCcchhh
Confidence 46788899999999 876665555556554 4679999 889999855 5789999999544332211110
Q ss_pred cccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCC
Q 048511 79 YRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKT 158 (351)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 158 (351)
+.+.-.+..+-+.|++|+| .+... ++.++...++-||.-..
T Consensus 199 ---------------------------~~~~k~gq~giisc~a~sP-----~~~~~------~a~gsY~q~~giy~~~~- 239 (406)
T KOG2919|consen 199 ---------------------------VTKGKFGQKGIISCFAFSP-----MDSKT------LAVGSYGQRVGIYNDDG- 239 (406)
T ss_pred ---------------------------hhcccccccceeeeeeccC-----CCCcc------eeeecccceeeeEecCC-
Confidence 0011244567799999998 66667 99999999988888766
Q ss_pred CcceEEEEEeccccccccceEEEEEcCCCCEEEEEee-CCeEEEEEcccCcccCcccccccccccc-cEEE--EEeecCC
Q 048511 159 TGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY-GGAFHLWRNVGVDIDNWQPQKVPSGHFA-AVMD--ISWSRSS 234 (351)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~~-~v~~--v~~sp~~ 234 (351)
+..+..+- +|.+.|+.+.|.++|+.|++|+. |-.|..||++... .++..+..|.. .=.. ....|.+
T Consensus 240 -~~pl~llg-----gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~----~pv~~L~rhv~~TNQRI~FDld~~~ 309 (406)
T KOG2919|consen 240 -RRPLQLLG-----GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR----DPVYALERHVGDTNQRILFDLDPKG 309 (406)
T ss_pred -CCceeeec-----ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc----chhhhhhhhccCccceEEEecCCCC
Confidence 55555443 89999999999999999999985 6889999999875 66777777765 2223 3456899
Q ss_pred CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC
Q 048511 235 DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE 297 (351)
Q Consensus 235 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d 297 (351)
++|++|+.||.|++||++... ..+.....+...++.++++| --.++++++..
T Consensus 310 ~~LasG~tdG~V~vwdlk~~g---------n~~sv~~~~sd~vNgvslnP--~mpilatssGq 361 (406)
T KOG2919|consen 310 EILASGDTDGSVRVWDLKDLG---------NEVSVTGNYSDTVNGVSLNP--IMPILATSSGQ 361 (406)
T ss_pred ceeeccCCCccEEEEecCCCC---------CcccccccccccccceecCc--ccceeeeccCc
Confidence 999999999999999998744 14555567778899999999 56777777655
No 161
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=2e-19 Score=155.33 Aligned_cols=252 Identities=16% Similarity=0.193 Sum_probs=192.3
Q ss_pred CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511 4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV 83 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 83 (351)
.+..+.+||+.. | ..+.++++|.+-|+|++|+ .+|+++|+|+.|..|.+|+-.-.. ...-.+...+
T Consensus 31 Ag~rlliyD~nd-G--~llqtLKgHKDtVycVAys--------~dGkrFASG~aDK~VI~W~~klEG---~LkYSH~D~I 96 (1081)
T KOG1538|consen 31 AGSRLLVYDTSD-G--TLLQPLKGHKDTVYCVAYA--------KDGKRFASGSADKSVIIWTSKLEG---ILKYSHNDAI 96 (1081)
T ss_pred cCCEEEEEeCCC-c--ccccccccccceEEEEEEc--------cCCceeccCCCceeEEEecccccc---eeeeccCCee
Confidence 366899999998 7 5678999999999999999 999999999999999999865433 2333456688
Q ss_pred eeeEeeecCCeEEecCCceeEEEEEe----ccc--cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC
Q 048511 84 ISLASYIEGPVLVAGSSSYQVSVESL----LIG--HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK 157 (351)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~--h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 157 (351)
.+|.|+|-.+.+++++-.. .-+|.. ... ....+.+.+|. .||++ |+.|-.+|+|.|-+-..
T Consensus 97 QCMsFNP~~h~LasCsLsd-FglWS~~qK~V~K~kss~R~~~CsWt------nDGqy------lalG~~nGTIsiRNk~g 163 (1081)
T KOG1538|consen 97 QCMSFNPITHQLASCSLSD-FGLWSPEQKSVSKHKSSSRIICCSWT------NDGQY------LALGMFNGTISIRNKNG 163 (1081)
T ss_pred eEeecCchHHHhhhcchhh-ccccChhhhhHHhhhhheeEEEeeec------CCCcE------EEEeccCceEEeecCCC
Confidence 8999999998888765221 111111 111 23468889999 89999 99999999999986553
Q ss_pred CCcceEEEEEeccccccccceEEEEEcCCC-----CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511 158 TTGIWMNVVTVGELSHSALGFYGGHWSPDG-----RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR 232 (351)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-----~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 232 (351)
+.. ..+....+.+.+|++++|+|.. ..+++.....++.+|.+.... +-.-..-.-...++.+.+
T Consensus 164 ---Eek--~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~------Igk~r~L~FdP~CisYf~ 232 (1081)
T KOG1538|consen 164 ---EEK--VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ------IGKDRALNFDPCCISYFT 232 (1081)
T ss_pred ---Ccc--eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee------ecccccCCCCchhheecc
Confidence 222 2333455778899999999953 478888899999999887743 221122223456889999
Q ss_pred CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 233 SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 233 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
+|.+++.|+.|+.+.+|-...- .+.+.......|+.++..| +++.++.|..||+|..|++-
T Consensus 233 NGEy~LiGGsdk~L~~fTR~Gv-----------rLGTvg~~D~WIWtV~~~P--NsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 233 NGEYILLGGSDKQLSLFTRDGV-----------RLGTVGEQDSWIWTVQAKP--NSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred CCcEEEEccCCCceEEEeecCe-----------EEeeccccceeEEEEEEcc--CCceEEEEEccCeeehhhhH
Confidence 9999999999999999964322 3444444667899999999 99999999999999999965
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=7.4e-21 Score=173.08 Aligned_cols=244 Identities=14% Similarity=0.156 Sum_probs=176.1
Q ss_pred CCCceEEEEEccCC-Cc--eEEEEeeeecCCceeEEEeeCCcccCCCCCc----cEEEEeeCCCcEEEEecCCCccccee
Q 048511 3 GLDNKIHLYRGQRT-GK--FVRACELKGHTDWIRSLDFSLPVCTSGEAIS----ILLVSSSQDKVIRIWKLALRGSSANT 75 (351)
Q Consensus 3 ~~dg~i~vw~~~~~-~~--~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~----~~l~t~~~dg~i~iwd~~~~~~~~~~ 75 (351)
+.+.++.||.+... .. ++.+..+.. ....+.++|. +.+ .+||.|..||.|.+||......-
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s~~s-~~rF~kL~W~--------~~g~~~~GlIaGG~edG~I~ly~p~~~~~~--- 103 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGSLQS-SNRFNKLAWG--------SYGSHSHGLIAGGLEDGNIVLYDPASIIAN--- 103 (1049)
T ss_pred ccccccceeeecccCccccccccccccc-cccceeeeec--------ccCCCccceeeccccCCceEEecchhhccC---
Confidence 34666777765531 11 233344432 4578899998 333 36999999999999998753110
Q ss_pred ecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEec
Q 048511 76 QSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQP 155 (351)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 155 (351)
....++.....|++.|..+.|++ ..+++ ||+|+.||.|.|||+
T Consensus 104 --------------------------~~~~~la~~~~h~G~V~gLDfN~-----~q~nl------LASGa~~geI~iWDl 146 (1049)
T KOG0307|consen 104 --------------------------ASEEVLATKSKHTGPVLGLDFNP-----FQGNL------LASGADDGEILIWDL 146 (1049)
T ss_pred --------------------------cchHHHhhhcccCCceeeeeccc-----cCCce------eeccCCCCcEEEecc
Confidence 00123345677999999999996 55667 999999999999999
Q ss_pred cCCCcceEEEEEeccccccccceEEEEEcCCC-CEEEEEeeCCeEEEEEcccCcccCcccccccccccc--cEEEEEeec
Q 048511 156 EKTTGIWMNVVTVGELSHSALGFYGGHWSPDG-RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFA--AVMDISWSR 232 (351)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~--~v~~v~~sp 232 (351)
...+ .- +... .......|.+++|+..- ..|++++.+|++.|||++.+ +++..+..+.+ .+..++|+|
T Consensus 147 nn~~--tP--~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~-----~pii~ls~~~~~~~~S~l~WhP 216 (1049)
T KOG0307|consen 147 NKPE--TP--FTPG-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK-----KPIIKLSDTPGRMHCSVLAWHP 216 (1049)
T ss_pred CCcC--CC--CCCC-CCCCcccceEeccchhhhHHhhccCCCCCceeccccCC-----CcccccccCCCccceeeeeeCC
Confidence 8732 11 1111 11345679999998754 56788888899999999987 34555554443 477899999
Q ss_pred CC-CEEEEEeCC---CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-c
Q 048511 233 SS-DYLLSVSHD---QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-L 307 (351)
Q Consensus 233 ~~-~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~ 307 (351)
+. ..|++++.| -.|.+||+|.... ++..+++|...|.++.|++ .|..++++++.|+.|.+|+.+ +
T Consensus 217 ~~aTql~~As~dd~~PviqlWDlR~ass---------P~k~~~~H~~GilslsWc~-~D~~lllSsgkD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 217 DHATQLLVASGDDSAPVIQLWDLRFASS---------PLKILEGHQRGILSLSWCP-QDPRLLLSSGKDNRIICWNPNTG 286 (1049)
T ss_pred CCceeeeeecCCCCCceeEeecccccCC---------chhhhcccccceeeeccCC-CCchhhhcccCCCCeeEecCCCc
Confidence 76 446666654 4699999987763 6666789999999999999 466999999999999999987 7
Q ss_pred hhhhceee
Q 048511 308 SFLKTLNH 315 (351)
Q Consensus 308 ~~~~~~~~ 315 (351)
+.+..+-.
T Consensus 287 Evl~~~p~ 294 (1049)
T KOG0307|consen 287 EVLGELPA 294 (1049)
T ss_pred eEeeecCC
Confidence 77777665
No 163
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=1.5e-19 Score=143.51 Aligned_cols=246 Identities=19% Similarity=0.254 Sum_probs=175.2
Q ss_pred ceEEEEEccCCCceEEEEeee--ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511 6 NKIHLYRGQRTGKFVRACELK--GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV 83 (351)
Q Consensus 6 g~i~vw~~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 83 (351)
+.+.+|+...++....+..+. .|......++|+ -+++....+||.+|.-|.|+|.|+.+++..
T Consensus 64 ~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~----yd~~~~~p~la~~G~~GvIrVid~~~~~~~----------- 128 (385)
T KOG1034|consen 64 NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWS----YDSNTGNPFLAAGGYLGVIRVIDVVSGQCS----------- 128 (385)
T ss_pred cEEEEEEECCccceeeeeeccCCCCCcceEEEEEE----ecCCCCCeeEEeecceeEEEEEecchhhhc-----------
Confidence 467777766644333444432 477788889998 332234568999999999999999877544
Q ss_pred eeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceE
Q 048511 84 ISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWM 163 (351)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 163 (351)
..+.+|...|+.+.+.| .+.++ ++++|.|..|++|++++ ..++
T Consensus 129 ------------------------~~~~ghG~sINeik~~p-----~~~ql------vls~SkD~svRlwnI~~--~~Cv 171 (385)
T KOG1034|consen 129 ------------------------KNYRGHGGSINEIKFHP-----DRPQL------VLSASKDHSVRLWNIQT--DVCV 171 (385)
T ss_pred ------------------------cceeccCccchhhhcCC-----CCCcE------EEEecCCceEEEEeccC--CeEE
Confidence 34578999999999998 55667 99999999999999999 7666
Q ss_pred EEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccC----------------c----c--cc-ccccc
Q 048511 164 NVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDN----------------W----Q--PQ-KVPSG 220 (351)
Q Consensus 164 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~----------------~----~--~~-~~~~~ 220 (351)
.. ++...+|...|.++.|++++.++++++.|.+|.+|++...+.+. + . +. .+..-
T Consensus 172 ~V--fGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~di 249 (385)
T KOG1034|consen 172 AV--FGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDI 249 (385)
T ss_pred EE--ecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccc
Confidence 54 44567899999999999999999999999999999998432110 0 0 00 02233
Q ss_pred ccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccc----cCccceEEeccccccccceeEEEEeeeCCCcEEEEecC
Q 048511 221 HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASL----MGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD 296 (351)
Q Consensus 221 ~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~ 296 (351)
|...|-++.|- |.++++-+-++.|..|..-..+... .....-..+.++......|+-+.|.-..-+.+||.|..
T Consensus 250 HrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq 327 (385)
T KOG1034|consen 250 HRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ 327 (385)
T ss_pred ccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccC
Confidence 66666666665 5789999999999999883221110 00111123334444555677777665235789999999
Q ss_pred CCeEEEEecCc
Q 048511 297 EKVARVFEAPL 307 (351)
Q Consensus 297 dg~v~vw~~~~ 307 (351)
.|.|.+||++.
T Consensus 328 ~g~v~vwdL~~ 338 (385)
T KOG1034|consen 328 SGKVYVWDLDN 338 (385)
T ss_pred CCcEEEEECCC
Confidence 99999999873
No 164
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.84 E-value=2.2e-19 Score=140.34 Aligned_cols=232 Identities=14% Similarity=0.164 Sum_probs=166.9
Q ss_pred CCCCceEEEEEccC-CCceEEEEeee-----ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccccee
Q 048511 2 GGLDNKIHLYRGQR-TGKFVRACELK-----GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANT 75 (351)
Q Consensus 2 g~~dg~i~vw~~~~-~~~~~~~~~~~-----~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~ 75 (351)
++.+..+|+|.+.. ..+..+...+. .+.+++++..|+ . -+-+++.++|-|-+..|||++++..-
T Consensus 117 ATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWn----e---~dp~~igtSSiDTTCTiWdie~~~~~--- 186 (364)
T KOG0290|consen 117 ATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWN----E---VDPNLIGTSSIDTTCTIWDIETGVSG--- 186 (364)
T ss_pred hcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccc----c---CCcceeEeecccCeEEEEEEeecccc---
Confidence 34566899999874 13333333332 345689999998 2 56789999999999999999986210
Q ss_pred ecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEec
Q 048511 76 QSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQP 155 (351)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 155 (351)
.+...+-+|.++|..++|. ..+ ..+||+.+.||.||+||+
T Consensus 187 -----------------------------~vkTQLIAHDKEV~DIaf~------~~s-----~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 187 -----------------------------TVKTQLIAHDKEVYDIAFL------KGS-----RDVFASVGADGSVRMFDL 226 (364)
T ss_pred -----------------------------ceeeEEEecCcceeEEEec------cCc-----cceEEEecCCCcEEEEEe
Confidence 1224467799999999999 322 234999999999999999
Q ss_pred cCCCcceEEEEEeccccccccceEEEEEcCC-CCEEEEEeeC-CeEEEEEcccCcccCcccccccccccccEEEEEeecC
Q 048511 156 EKTTGIWMNVVTVGELSHSALGFYGGHWSPD-GRSILAHGYG-GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS 233 (351)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d-g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 233 (351)
+..+.. ++. .+.+....+...++|+++ -+++|+-..| ..|.+.|++... .++..+++|.+.|++++|.|.
T Consensus 227 R~leHS---TII-YE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~----tpva~L~~H~a~VNgIaWaPh 298 (364)
T KOG0290|consen 227 RSLEHS---TII-YEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC----TPVARLRNHQASVNGIAWAPH 298 (364)
T ss_pred cccccc---eEE-ecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC----cceehhhcCcccccceEecCC
Confidence 983322 221 112233557889999885 4677876665 679999999875 789999999999999999995
Q ss_pred -CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC
Q 048511 234 -SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE 297 (351)
Q Consensus 234 -~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d 297 (351)
...|++++.|..+.+||+...... ....++..+. .++.|+.+.|++. .+.+|+.+...
T Consensus 299 S~~hictaGDD~qaliWDl~q~~~~----~~~dPilay~-a~~EVNqi~Ws~~-~~Dwiai~~~k 357 (364)
T KOG0290|consen 299 SSSHICTAGDDCQALIWDLQQMPRE----NGEDPILAYT-AGGEVNQIQWSSS-QPDWIAICFGK 357 (364)
T ss_pred CCceeeecCCcceEEEEeccccccc----CCCCchhhhh-ccceeeeeeeccc-CCCEEEEEecC
Confidence 467999999999999999765420 0111222222 4567999999973 47788777554
No 165
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.84 E-value=3.1e-19 Score=139.43 Aligned_cols=245 Identities=16% Similarity=0.225 Sum_probs=170.3
Q ss_pred CceEEEEEccC-CCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511 5 DNKIHLYRGQR-TGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV 83 (351)
Q Consensus 5 dg~i~vw~~~~-~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 83 (351)
.+.|.|-.+.. .+++..... -.|.-+++.+.|.|+... ..-++|||++ ..+|+|.+.............
T Consensus 72 ~Nkvqiv~ld~~s~e~~~~a~-fd~~YP~tK~~wiPd~~g---~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L---- 141 (364)
T KOG0290|consen 72 NNKVQIVQLDEDSGELVEDAN-FDHPYPVTKLMWIPDSKG---VYPDLLATSS--DFLRLWRIGDEESRVELQSVL---- 141 (364)
T ss_pred CCeeEEEEEccCCCceeccCC-CCCCCCccceEecCCccc---cCcchhhccc--CeEEEEeccCcCCceehhhhh----
Confidence 34555554433 143333333 258889999999932210 1225787776 369999998543221111000
Q ss_pred eeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceE
Q 048511 84 ISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWM 163 (351)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 163 (351)
.......+..+++++.|+. -+.++ +.++|-|-+..|||++.+....+
T Consensus 142 ----------------------~~~kns~~~aPlTSFDWne-----~dp~~------igtSSiDTTCTiWdie~~~~~~v 188 (364)
T KOG0290|consen 142 ----------------------NNNKNSEFCAPLTSFDWNE-----VDPNL------IGTSSIDTTCTIWDIETGVSGTV 188 (364)
T ss_pred ----------------------ccCcccccCCccccccccc-----CCcce------eEeecccCeEEEEEEeeccccce
Confidence 0011234667899999995 55666 99999999999999998311113
Q ss_pred EEEEeccccccccceEEEEEcCCC-CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC-CCEEEEEe
Q 048511 164 NVVTVGELSHSALGFYGGHWSPDG-RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS-SDYLLSVS 241 (351)
Q Consensus 164 ~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~-~~~l~s~~ 241 (351)
++.. -.|...|+.++|...+ ..+++.+.||.+|+||++..+.. ..++.-.....+...++|++. -+++|+-.
T Consensus 189 kTQL----IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS--TIIYE~p~~~~pLlRLswnkqDpnymATf~ 262 (364)
T KOG0290|consen 189 KTQL----IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS--TIIYEDPSPSTPLLRLSWNKQDPNYMATFA 262 (364)
T ss_pred eeEE----EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc--eEEecCCCCCCcceeeccCcCCchHHhhhh
Confidence 3322 2789999999999865 48899999999999999886431 222332233457888999984 46777766
Q ss_pred CC-CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCch
Q 048511 242 HD-QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLS 308 (351)
Q Consensus 242 ~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 308 (351)
.| ..|.|.|++... .++.+++.|...|+.++|.| .....|.++++|..+.+||+...
T Consensus 263 ~dS~~V~iLDiR~P~---------tpva~L~~H~a~VNgIaWaP-hS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 263 MDSNKVVILDIRVPC---------TPVARLRNHQASVNGIAWAP-HSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred cCCceEEEEEecCCC---------cceehhhcCcccccceEecC-CCCceeeecCCcceEEEEecccc
Confidence 65 569999999887 37889999999999999999 56889999999999999998743
No 166
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.84 E-value=2.7e-18 Score=145.98 Aligned_cols=237 Identities=13% Similarity=0.122 Sum_probs=158.1
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEE-eeCCCcEEEEecCCCcccceeecccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVS-SSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t-~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
++.++.|++||..+ ++. ...+..+.. +..+.|+ ++++.+++ ++.|+.|++||+.+...+..... .
T Consensus 49 ~~~~~~v~~~d~~~-~~~--~~~~~~~~~-~~~~~~~--------~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~--~ 114 (300)
T TIGR03866 49 ASDSDTIQVIDLAT-GEV--IGTLPSGPD-PELFALH--------PNGKILYIANEDDNLVTVIDIETRKVLAEIPV--G 114 (300)
T ss_pred ECCCCeEEEEECCC-CcE--EEeccCCCC-ccEEEEC--------CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC--C
Confidence 45789999999988 643 344554443 5678899 77776654 56689999999987655443332 2
Q ss_pred cceeeeEeeecCCeEEecCCceeE-EEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeE-EeecCCeE
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQV-SVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSIL-SASMDKTM 150 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~-s~~~d~~i 150 (351)
.....+.++|++..++++..+... ..+.. .. ....+.++.|+ ++++. |+ ++..++.|
T Consensus 115 ~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s------~dg~~------l~~~~~~~~~v 181 (300)
T TIGR03866 115 VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFT------ADGKE------LWVSSEIGGTV 181 (300)
T ss_pred CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEEC------CCCCE------EEEEcCCCCEE
Confidence 245678999999998887654322 11111 11 12345678898 67776 64 55569999
Q ss_pred EEEeccCCCcceEEEEEeccccc--cccceEEEEEcCCCCEEEEE-eeCCeEEEEEcccCcccCcccccccccccccEEE
Q 048511 151 MIWQPEKTTGIWMNVVTVGELSH--SALGFYGGHWSPDGRSILAH-GYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD 227 (351)
Q Consensus 151 ~iwd~~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~ 227 (351)
++||+++ ++....+....... .......++|+|++++++++ +.++.+.+||+++.+ ....+ .+...+.+
T Consensus 182 ~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~-----~~~~~-~~~~~~~~ 253 (300)
T TIGR03866 182 SVIDVAT--RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE-----VLDYL-LVGQRVWQ 253 (300)
T ss_pred EEEEcCc--ceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc-----EEEEE-EeCCCcce
Confidence 9999998 65555443211111 11234568899999986554 456789999998753 23332 23457889
Q ss_pred EEeecCCCEEEEE-eCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEee
Q 048511 228 ISWSRSSDYLLSV-SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQ 284 (351)
Q Consensus 228 v~~sp~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 284 (351)
++|+|++++|+++ ..++.|++||+++++ .+..++. +...+.++++|
T Consensus 254 ~~~~~~g~~l~~~~~~~~~i~v~d~~~~~----------~~~~~~~-~~~~~~~~~~~ 300 (300)
T TIGR03866 254 LAFTPDEKYLLTTNGVSNDVSVIDVAALK----------VIKSIKV-GRLPWGVVVRP 300 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCc----------EEEEEEc-ccccceeEeCC
Confidence 9999999999876 468999999998877 4444433 34457777754
No 167
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.5e-19 Score=142.98 Aligned_cols=177 Identities=15% Similarity=0.196 Sum_probs=134.1
Q ss_pred EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc---------------------------
Q 048511 108 SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG--------------------------- 160 (351)
Q Consensus 108 ~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--------------------------- 160 (351)
..+++|.+.|++++|+ .||+. |++++.|+.|++|+++..+.
T Consensus 80 ~~LKgH~~~vt~~~Fs------SdGK~------lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~ 147 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFS------SDGKK------LATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSV 147 (420)
T ss_pred hhhhccCCceeeeEEc------CCCce------eEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceE
Confidence 4589999999999999 89999 99999999999999975111
Q ss_pred -------ceEEEEEec------------------cccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccc
Q 048511 161 -------IWMNVVTVG------------------ELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQ 215 (351)
Q Consensus 161 -------~~~~~~~~~------------------~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 215 (351)
..+..+.+. ....|...+..+-...++.+|++++.|..|.+|+++. +.+
T Consensus 148 vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG------q~L 221 (420)
T KOG2096|consen 148 VVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG------QLL 221 (420)
T ss_pred EEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCC------cee
Confidence 001111100 0112334455555556778999999999999999995 456
Q ss_pred cccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEec
Q 048511 216 KVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGA 295 (351)
Q Consensus 216 ~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~ 295 (351)
..+......-+..+.||+|+++++++---.|+||.+--.+.-. .+....+..+.+|...|..++|++ +...+++.|
T Consensus 222 ~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~--fqev~rvf~LkGH~saV~~~aFsn--~S~r~vtvS 297 (420)
T KOG2096|consen 222 QSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGT--FQEVKRVFSLKGHQSAVLAAAFSN--SSTRAVTVS 297 (420)
T ss_pred eeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcc--hhhhhhhheeccchhheeeeeeCC--CcceeEEEe
Confidence 6666555556678899999999999998889999975433100 223345567889999999999999 899999999
Q ss_pred CCCeEEEEecC
Q 048511 296 DEKVARVFEAP 306 (351)
Q Consensus 296 ~dg~v~vw~~~ 306 (351)
.||.+||||.+
T Consensus 298 kDG~wriwdtd 308 (420)
T KOG2096|consen 298 KDGKWRIWDTD 308 (420)
T ss_pred cCCcEEEeecc
Confidence 99999999975
No 168
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.82 E-value=2.4e-17 Score=141.94 Aligned_cols=269 Identities=12% Similarity=0.095 Sum_probs=172.2
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEee-CCCcEEEEecCCCccccee-eccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSS-QDKVIRIWKLALRGSSANT-QSTY 79 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~-~dg~i~iwd~~~~~~~~~~-~~~~ 79 (351)
...|+.|++|++.+.+++..+..+. +.+....++++ +++++|+.++ .++.|.+|++.....+... ....
T Consensus 8 ~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~s--------pd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~ 78 (330)
T PRK11028 8 SPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVIS--------PDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPL 78 (330)
T ss_pred cCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEEC--------CCCCEEEEEECCCCcEEEEEECCCCceEEeeeecC
Confidence 3568999999997546666666665 34667889999 8888887664 5788999999732222111 1122
Q ss_pred ccceeeeEeeecCCeEEecCC-ceeEEEEEecc-----------ccccceEEEEecCCCCCCCCCcccCCCcee-EEeec
Q 048511 80 RKEVISLASYIEGPVLVAGSS-SYQVSVESLLI-----------GHEDWVYSVQWEPPSTAPSDGVSCQQPSSI-LSASM 146 (351)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~-----------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l-~s~~~ 146 (351)
......++++++++.++++.. ++.+.++..-. .+.....+++++ +++++ + ++...
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~------p~g~~------l~v~~~~ 146 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANID------PDNRT------LWVPCLK 146 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeC------CCCCE------EEEeeCC
Confidence 335678999999998887653 44444433210 112235667788 67776 6 45556
Q ss_pred CCeEEEEeccCCCcceEE----EEEeccccccccceEEEEEcCCCCEEEEEee-CCeEEEEEcccCcccCccccccccc-
Q 048511 147 DKTMMIWQPEKTTGIWMN----VVTVGELSHSALGFYGGHWSPDGRSILAHGY-GGAFHLWRNVGVDIDNWQPQKVPSG- 220 (351)
Q Consensus 147 d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~- 220 (351)
++.|.+||+... +.... .... ........++|+|++++++++.. ++.|.+|++..... ....+..+..
T Consensus 147 ~~~v~v~d~~~~-g~l~~~~~~~~~~----~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~-~~~~~~~~~~~ 220 (330)
T PRK11028 147 EDRIRLFTLSDD-GHLVAQEPAEVTT----VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG-EIECVQTLDMM 220 (330)
T ss_pred CCEEEEEEECCC-CcccccCCCceec----CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC-CEEEEEEEecC
Confidence 799999999762 22210 1111 11234678999999999988876 89999999974210 0112222211
Q ss_pred -----ccccEEEEEeecCCCEEEEEeC-CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEe
Q 048511 221 -----HFAAVMDISWSRSSDYLLSVSH-DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSG 294 (351)
Q Consensus 221 -----~~~~v~~v~~sp~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~ 294 (351)
+......+.++|++++|+++.. ++.|.+|++..... .++.+..... +.....++++| ++++|+++
T Consensus 221 p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~------~~~~~~~~~~-~~~p~~~~~~~--dg~~l~va 291 (330)
T PRK11028 221 PADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGS------VLSFEGHQPT-ETQPRGFNIDH--SGKYLIAA 291 (330)
T ss_pred CCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC------eEEEeEEEec-cccCCceEECC--CCCEEEEE
Confidence 1223446889999999988754 78999999865431 1122222211 23456789999 88888766
Q ss_pred c-CCCeEEEEecC
Q 048511 295 A-DEKVARVFEAP 306 (351)
Q Consensus 295 ~-~dg~v~vw~~~ 306 (351)
. .++.|.+|+++
T Consensus 292 ~~~~~~v~v~~~~ 304 (330)
T PRK11028 292 GQKSHHISVYEID 304 (330)
T ss_pred EccCCcEEEEEEc
Confidence 6 48999999875
No 169
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=6.5e-18 Score=152.84 Aligned_cols=269 Identities=12% Similarity=0.115 Sum_probs=182.1
Q ss_pred CCCceEEEEEccCCCceEEEEeeeec---CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCc-cccee---
Q 048511 3 GLDNKIHLYRGQRTGKFVRACELKGH---TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRG-SSANT--- 75 (351)
Q Consensus 3 ~~dg~i~vw~~~~~~~~~~~~~~~~h---~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~-~~~~~--- 75 (351)
...-.|+|||.+. + ..+..|..+ ...|+.+.+. ++ .+..++++|+.||.||||+-.... ...++
T Consensus 1083 d~r~~i~vwd~e~-~--~~l~~F~n~~~~~t~Vs~l~li----Ne--~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTa 1153 (1387)
T KOG1517|consen 1083 DDRERIRVWDWEK-G--RLLNGFDNGAFPDTRVSDLELI----NE--QDDALLLTASSDGVIRIWKDYADKWKKPELVTA 1153 (1387)
T ss_pred CCcceEEEEeccc-C--ceeccccCCCCCCCccceeeee----cc--cchhheeeeccCceEEEecccccccCCceeEEe
Confidence 3345899999998 6 334445433 3579999998 44 677899999999999999864332 11111
Q ss_pred -------ecccccceeeeEeeecCCeEEecCCceeEEEEEec---------cccccceEEEEecCCCCCCCCCcccCCCc
Q 048511 76 -------QSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLL---------IGHEDWVYSVQWEPPSTAPSDGVSCQQPS 139 (351)
Q Consensus 76 -------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---------~~h~~~v~~l~~~p~~~~~~~~~~~~~~~ 139 (351)
.....+...-+.|......|.+++....+++|..- .+-...|+++.-+- ..|++
T Consensus 1154 w~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~-----~~gn~----- 1223 (1387)
T KOG1517|consen 1154 WSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADL-----VHGNI----- 1223 (1387)
T ss_pred eccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccc-----cCCce-----
Confidence 11112223455677777777777767777777542 12233455554331 45677
Q ss_pred eeEEeecCCeEEEEeccCCCcc-eEEEEEeccccccccc--eEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcccCcccc
Q 048511 140 SILSASMDKTMMIWQPEKTTGI-WMNVVTVGELSHSALG--FYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDIDNWQPQ 215 (351)
Q Consensus 140 ~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~--i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~ 215 (351)
++.|..||.|++||.+..... .+...+ .|... |..+.+.++|- .|++|+.+|.|++||++.... ...
T Consensus 1224 -i~AGfaDGsvRvyD~R~a~~ds~v~~~R-----~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~---e~~ 1294 (1387)
T KOG1517|consen 1224 -IAAGFADGSVRVYDRRMAPPDSLVCVYR-----EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK---ETF 1294 (1387)
T ss_pred -EEEeecCCceEEeecccCCccccceeec-----ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc---ccc
Confidence 999999999999999974332 222232 55555 99999988765 599999999999999998422 112
Q ss_pred ccccccc--c-cEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccc-cccceeEEEEeeeCCCcEE
Q 048511 216 KVPSGHF--A-AVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQV-HGHDINCVTIIQGKGNHRF 291 (351)
Q Consensus 216 ~~~~~~~--~-~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l 291 (351)
.+...|. + ..+++..+++..++|+|+. +.|+||++..... ..++.-..+.+ ....+.|++|+| -.-++
T Consensus 1295 ~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l-----~~~k~n~~F~~q~~gs~scL~FHP--~~~ll 1366 (1387)
T KOG1517|consen 1295 LTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL-----NIIKYNPGFMGQRIGSVSCLAFHP--HRLLL 1366 (1387)
T ss_pred ceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh-----cccccCcccccCcCCCcceeeecc--hhHhh
Confidence 2223332 3 5899999999999999988 9999999976652 22222122211 123479999999 67788
Q ss_pred EEecCCCeEEEEecCc
Q 048511 292 VSGADEKVARVFEAPL 307 (351)
Q Consensus 292 ~s~~~dg~v~vw~~~~ 307 (351)
|+|+.|..|.||..+.
T Consensus 1367 AaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1367 AAGSADSTVSIYSCEK 1382 (1387)
T ss_pred hhccCCceEEEeecCC
Confidence 9999999999998763
No 170
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.81 E-value=4.1e-18 Score=138.94 Aligned_cols=249 Identities=16% Similarity=0.230 Sum_probs=163.4
Q ss_pred CCCCCceEEEEEccC---CC---ceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccce
Q 048511 1 MGGLDNKIHLYRGQR---TG---KFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSAN 74 (351)
Q Consensus 1 tg~~dg~i~vw~~~~---~~---~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~ 74 (351)
||+.|..|+||.+.. .+ +...+..|..|..+|+++.|+ ++|++||||+.+|.|.+|....-... .
T Consensus 31 T~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~--------p~gelLASg~D~g~v~lWk~~~~~~~-~ 101 (434)
T KOG1009|consen 31 TAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFS--------PDGELLASGGDGGEVFLWKQGDVRIF-D 101 (434)
T ss_pred cccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEc--------CCcCeeeecCCCceEEEEEecCcCCc-c
Confidence 688999999998764 11 456677889999999999999 89999999999999999987641110 0
Q ss_pred eecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEe
Q 048511 75 TQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQ 154 (351)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd 154 (351)
.. . -.........++..+.+|.+.|+.++|+ +++++ +++++.|+.+++||
T Consensus 102 ~d----------------~--e~~~~ke~w~v~k~lr~h~~diydL~Ws------~d~~~------l~s~s~dns~~l~D 151 (434)
T KOG1009|consen 102 AD----------------T--EADLNKEKWVVKKVLRGHRDDIYDLAWS------PDSNF------LVSGSVDNSVRLWD 151 (434)
T ss_pred cc----------------c--hhhhCccceEEEEEecccccchhhhhcc------CCCce------eeeeeccceEEEEE
Confidence 00 0 0000112235567788999999999999 78889 99999999999999
Q ss_pred ccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcc-------------------------
Q 048511 155 PEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDI------------------------- 209 (351)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~------------------------- 209 (351)
+.. +.....+. .|...+..++|.|-++++++-+.|...+.+.+.....
T Consensus 152 v~~--G~l~~~~~-----dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLf 224 (434)
T KOG1009|consen 152 VHA--GQLLAILD-----DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLF 224 (434)
T ss_pred ecc--ceeEeecc-----ccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeee
Confidence 998 66555443 5555666666666666655555554333333321100
Q ss_pred ---------------------------------------------cCcccccccccccccEEEEEeec------------
Q 048511 210 ---------------------------------------------DNWQPQKVPSGHFAAVMDISWSR------------ 232 (351)
Q Consensus 210 ---------------------------------------------~~~~~~~~~~~~~~~v~~v~~sp------------ 232 (351)
....+...+.....+...+.|+|
T Consensus 225 hDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~ 304 (434)
T KOG1009|consen 225 HDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEK 304 (434)
T ss_pred ecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccc
Confidence 00012222222233334444443
Q ss_pred ------CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 233 ------SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 233 ------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
-+..++.++ ...|+|||.+... .+..+ -..|-..|+.++|++ ||..++..|.||...+-.++
T Consensus 305 ~~~~lpyrlvfaiAt-~~svyvydtq~~~-------P~~~v--~nihy~~iTDiaws~--dg~~l~vSS~DGyCS~vtfe 372 (434)
T KOG1009|consen 305 FLFVLPYRLVFAIAT-KNSVYVYDTQTLE-------PLAVV--DNIHYSAITDIAWSD--DGSVLLVSSTDGFCSLVTFE 372 (434)
T ss_pred cccccccceEEEEee-cceEEEecccccc-------ceEEE--eeeeeeeecceeecC--CCcEEEEeccCCceEEEEEc
Confidence 111233343 4477888876654 11122 235777899999999 99999999999988887765
Q ss_pred c
Q 048511 307 L 307 (351)
Q Consensus 307 ~ 307 (351)
+
T Consensus 373 ~ 373 (434)
T KOG1009|consen 373 P 373 (434)
T ss_pred c
Confidence 3
No 171
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.81 E-value=2.2e-17 Score=146.11 Aligned_cols=268 Identities=11% Similarity=0.087 Sum_probs=192.0
Q ss_pred ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccc-----ceeecccc
Q 048511 6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSS-----ANTQSTYR 80 (351)
Q Consensus 6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~-----~~~~~~~~ 80 (351)
+.+.||+++... .+...+. -...|+|+.|+ | .+..+||.|..+|.|.+||+...... ......+.
T Consensus 222 ~~~~vW~~~~p~--~Pe~~~~-~~s~v~~~~f~----p---~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~ 291 (555)
T KOG1587|consen 222 GVLLVWSLKNPN--TPELVLE-SPSEVTCLKFC----P---FDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHS 291 (555)
T ss_pred ceEEEEecCCCC--CceEEEe-cCCceeEEEec----c---CCcceEEeeccCceEEEEEccCCCCCCCcccccccccCC
Confidence 479999999843 3334444 36789999999 4 56779999999999999999877652 22334456
Q ss_pred cceeeeEeeecCC--eEEecCCceeEEEEEec--------------c------ccccceEEEEecCCCCCCCCCcccCCC
Q 048511 81 KEVISLASYIEGP--VLVAGSSSYQVSVESLL--------------I------GHEDWVYSVQWEPPSTAPSDGVSCQQP 138 (351)
Q Consensus 81 ~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~--------------~------~h~~~v~~l~~~p~~~~~~~~~~~~~~ 138 (351)
..+..+.|..+-. -+++++.|+.+..|..- . .....+++++|.| .+...
T Consensus 292 ~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~-----~~p~~---- 362 (555)
T KOG1587|consen 292 EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEP-----TDPNH---- 362 (555)
T ss_pred cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeecc-----CCCce----
Confidence 6777777766443 47777778888666430 0 1123578899997 45556
Q ss_pred ceeEEeecCCeEEEEeccCCCcceEEEEE-eccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccc
Q 048511 139 SSILSASMDKTMMIWQPEKTTGIWMNVVT-VGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKV 217 (351)
Q Consensus 139 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 217 (351)
|+.|+.+|.|.-=+....+......++ ......|.++|+++.++|=+..++..+.|.+++||...... .++..
T Consensus 363 --FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~----~Pl~~ 436 (555)
T KOG1587|consen 363 --FIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA----SPLLS 436 (555)
T ss_pred --EEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC----Ccchh
Confidence 999999999877333321111101111 11234778899999999977666555559999999887322 67888
Q ss_pred cccccccEEEEEeecCCC-EEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecC
Q 048511 218 PSGHFAAVMDISWSRSSD-YLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD 296 (351)
Q Consensus 218 ~~~~~~~v~~v~~sp~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~ 296 (351)
+..+...|++++|||-.. .|+++..||.|.+||+..... .++.+...+....+.+.|++ .+..|++|..
T Consensus 437 ~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~--------~Pv~s~~~~~~~l~~~~~s~--~g~~lavGd~ 506 (555)
T KOG1587|consen 437 LDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE--------EPVLSQKVCSPALTRVRWSP--NGKLLAVGDA 506 (555)
T ss_pred hhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc--------CCcccccccccccceeecCC--CCcEEEEecC
Confidence 888888899999999764 567888899999999977653 23444444455678888888 8999999999
Q ss_pred CCeEEEEecCch
Q 048511 297 EKVARVFEAPLS 308 (351)
Q Consensus 297 dg~v~vw~~~~~ 308 (351)
.|.+++|++...
T Consensus 507 ~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 507 NGTTHILKLSES 518 (555)
T ss_pred CCcEEEEEcCch
Confidence 999999998633
No 172
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.8e-17 Score=126.59 Aligned_cols=262 Identities=15% Similarity=0.142 Sum_probs=174.5
Q ss_pred CCCCCceEEEEEccC--------CCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccc
Q 048511 1 MGGLDNKIHLYRGQR--------TGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSS 72 (351)
Q Consensus 1 tg~~dg~i~vw~~~~--------~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~ 72 (351)
+|..+|+|.++.+.. .++ ..+...++|+++|+.++|. .++|++|+ ||.|+-|..+.....
T Consensus 27 agn~~G~iav~sl~sl~s~sa~~~gk-~~iv~eqahdgpiy~~~f~----------d~~Lls~g-dG~V~gw~W~E~~es 94 (325)
T KOG0649|consen 27 AGNLFGDIAVLSLKSLDSGSAEPPGK-LKIVPEQAHDGPIYYLAFH----------DDFLLSGG-DGLVYGWEWNEEEES 94 (325)
T ss_pred EecCCCeEEEEEehhhhccccCCCCC-cceeeccccCCCeeeeeee----------hhheeecc-CceEEEeeehhhhhh
Confidence 377899999998754 233 3455679999999999999 56888887 599999998765432
Q ss_pred ceeecccccceeeeEeeecCCeEEecCCceeEEEEEe-cccc-----ccceEEEEecCCCCCCCCCcccCCCceeEEeec
Q 048511 73 ANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL-LIGH-----EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM 146 (351)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~h-----~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~ 146 (351)
..... +|.. ..-| --.|+++-..| ..+- ++.++.
T Consensus 95 ~~~K~----------------------------lwe~~~P~~~~~~evPeINam~ldP------~enS------i~~AgG 134 (325)
T KOG0649|consen 95 LATKR----------------------------LWEVKIPMQVDAVEVPEINAMWLDP------SENS------ILFAGG 134 (325)
T ss_pred ccchh----------------------------hhhhcCccccCcccCCccceeEecc------CCCc------EEEecC
Confidence 11110 0000 0111 23578888885 3333 666679
Q ss_pred CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc----Ccccccccccc-
Q 048511 147 DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID----NWQPQKVPSGH- 221 (351)
Q Consensus 147 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~----~~~~~~~~~~~- 221 (351)
|+.++-||+++ |.....++ +|+..|.++.--.....+++|+.||++++||+++.+.- .++....+..|
T Consensus 135 D~~~y~~dlE~--G~i~r~~r-----GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~ 207 (325)
T KOG0649|consen 135 DGVIYQVDLED--GRIQREYR-----GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDW 207 (325)
T ss_pred CeEEEEEEecC--CEEEEEEc-----CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCccc
Confidence 99999999999 88888887 99999999998666667999999999999999987431 11111112222
Q ss_pred cccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEE
Q 048511 222 FAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVAR 301 (351)
Q Consensus 222 ~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~ 301 (351)
..+|.+++- +..+|++|+ ...+.+|.++..+.. .+..+.+ .+..+.|. ...+++++....|.
T Consensus 208 g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t--------~vfpipa---~v~~v~F~----~d~vl~~G~g~~v~ 269 (325)
T KOG0649|consen 208 GKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSEST--------CVFPIPA---RVHLVDFV----DDCVLIGGEGNHVQ 269 (325)
T ss_pred CceeEEEec--cCceEEecC-CCceeEEeccCCCce--------EEEeccc---ceeEeeee----cceEEEecccccee
Confidence 234655554 456787664 568999999887621 2222333 36778885 46788888999999
Q ss_pred EEecCchhhhcee--eccccccchhhhhHHhHHhhcceeeeccCCCC
Q 048511 302 VFEAPLSFLKTLN--HATFQESSFHEDLQADVQILGANMSALGLSQK 346 (351)
Q Consensus 302 vw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (351)
-|.+.|....... .+......-. ..|. .-+..-|.|||
T Consensus 270 ~~~l~Gvl~a~ip~~s~~c~s~s~~-----~~p~--k~~s~ag~s~~ 309 (325)
T KOG0649|consen 270 SYTLNGVLQANIPVESTACYSASWQ-----TSPI--KFISIAGFSNK 309 (325)
T ss_pred eeeeccEEEEeccCCccceeeeccc-----CCce--EEEEeccccee
Confidence 9998865433222 2222222221 2355 67777788886
No 173
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.80 E-value=5.2e-18 Score=145.70 Aligned_cols=226 Identities=15% Similarity=0.221 Sum_probs=160.8
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc--cc----e
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS--SA----N 74 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~--~~----~ 74 (351)
+++.|.+|++||+.. +++.-...+.||.+.|.+++|. + .+...|+||+.||.|.|||++-... .. .
T Consensus 117 sasGDsT~r~Wdvk~-s~l~G~~~~~GH~~SvkS~cf~----~---~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~ 188 (720)
T KOG0321|consen 117 SASGDSTIRPWDVKT-SRLVGGRLNLGHTGSVKSECFM----P---TNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNR 188 (720)
T ss_pred EccCCceeeeeeecc-ceeecceeecccccccchhhhc----c---CCCcceeeccCCCcEEEEEEeccchhhHHHHhhh
Confidence 367899999999999 7666666688999999999999 3 4567899999999999999864331 00 0
Q ss_pred e----ec----------------ccccceee---eEeeecCCeEEecCC-ceeEEEEEecc----------------cc-
Q 048511 75 T----QS----------------TYRKEVIS---LASYIEGPVLVAGSS-SYQVSVESLLI----------------GH- 113 (351)
Q Consensus 75 ~----~~----------------~~~~~~~~---~~~~~~~~~l~~~~~-~~~~~~~~~~~----------------~h- 113 (351)
+ .. .....+.+ ..+..|...|++++. |+.+++|..-+ -|
T Consensus 189 ~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~s 268 (720)
T KOG0321|consen 189 IYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHS 268 (720)
T ss_pred hhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcc
Confidence 0 00 00222233 566778888887665 88888886421 12
Q ss_pred --ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc--cceEEEEEcCCCCE
Q 048511 114 --EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA--LGFYGGHWSPDGRS 189 (351)
Q Consensus 114 --~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~i~~i~~~~~~~~ 189 (351)
.-.+.++... ..|.+ |.+...|+.|.+|++.......+..+. ++. ..-..-..+|++.+
T Consensus 269 krs~G~~nL~lD------ssGt~------L~AsCtD~sIy~ynm~s~s~sP~~~~s-----g~~~~sf~vks~lSpd~~~ 331 (720)
T KOG0321|consen 269 KRSVGQVNLILD------SSGTY------LFASCTDNSIYFYNMRSLSISPVAEFS-----GKLNSSFYVKSELSPDDCS 331 (720)
T ss_pred cceeeeEEEEec------CCCCe------EEEEecCCcEEEEeccccCcCchhhcc-----CcccceeeeeeecCCCCce
Confidence 2235666666 55666 666666999999999874333322222 111 11123356899999
Q ss_pred EEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCC-CEEEEEeCCCcEEEEcCCCcc
Q 048511 190 ILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSS-DYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 190 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~-~~l~s~~~dg~i~vwd~~~~~ 255 (351)
+++|+.|...++|.+.+.+ .+...+.+|.-.|++++|.|.. .-++++++|..++||++.++-
T Consensus 332 l~SgSsd~~ayiw~vs~~e----~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 332 LLSGSSDEQAYIWVVSSPE----APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred EeccCCCcceeeeeecCcc----CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 9999999999999998875 6677888999999999999854 237778999999999996654
No 174
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.79 E-value=7.9e-19 Score=142.61 Aligned_cols=167 Identities=21% Similarity=0.340 Sum_probs=132.1
Q ss_pred eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEE--EeccccccccceEEEEEcCC
Q 048511 109 LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVV--TVGELSHSALGFYGGHWSPD 186 (351)
Q Consensus 109 ~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~i~~i~~~~~ 186 (351)
.+.||+.+|..++|+| .+.+. +|+||.|.+|.||++.. +.....+ ....+.+|...|-.++|+|.
T Consensus 76 ~v~GHt~~vLDi~w~P-----fnD~v------IASgSeD~~v~vW~IPe--~~l~~~ltepvv~L~gH~rrVg~V~wHPt 142 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCP-----FNDCV------IASGSEDTKVMVWQIPE--NGLTRDLTEPVVELYGHQRRVGLVQWHPT 142 (472)
T ss_pred CccCccccccccccCc-----cCCce------eecCCCCceEEEEECCC--cccccCcccceEEEeecceeEEEEeeccc
Confidence 3578999999999999 66777 99999999999999986 2221111 12234589999999999996
Q ss_pred C-CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceE
Q 048511 187 G-RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWH 265 (351)
Q Consensus 187 ~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 265 (351)
. +.|++++.|.+|.+|++.+++ .+.++. |...|++++|+.+|.+|++.+.|+.|||||.+.+.
T Consensus 143 A~NVLlsag~Dn~v~iWnv~tge-----ali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~---------- 206 (472)
T KOG0303|consen 143 APNVLLSAGSDNTVSIWNVGTGE-----ALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT---------- 206 (472)
T ss_pred chhhHhhccCCceEEEEeccCCc-----eeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCc----------
Confidence 4 688999999999999999984 355565 99999999999999999999999999999999987
Q ss_pred Eecccccccc-ceeEEEEeeeCCCcEEEEec---CCCeEEEEecC
Q 048511 266 EVARPQVHGH-DINCVTIIQGKGNHRFVSGA---DEKVARVFEAP 306 (351)
Q Consensus 266 ~~~~~~~~~~-~i~~~~~~~~~~~~~l~s~~---~dg~v~vw~~~ 306 (351)
.+..-.+|.+ .-..+.|.. ++.++.+|- .+..+-+||..
T Consensus 207 ~v~e~~~heG~k~~Raifl~--~g~i~tTGfsr~seRq~aLwdp~ 249 (472)
T KOG0303|consen 207 VVSEGVAHEGAKPARAIFLA--SGKIFTTGFSRMSERQIALWDPN 249 (472)
T ss_pred EeeecccccCCCcceeEEec--cCceeeeccccccccceeccCcc
Confidence 3433345543 355666777 677555543 67889999964
No 175
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.79 E-value=1.1e-17 Score=130.75 Aligned_cols=221 Identities=19% Similarity=0.302 Sum_probs=155.0
Q ss_pred CCCcEEEEecCCCcc--cceeecccccceeeeEeeecCCeEEe-cCC----c---eeEEEEE-----------------e
Q 048511 57 QDKVIRIWKLALRGS--SANTQSTYRKEVISLASYIEGPVLVA-GSS----S---YQVSVES-----------------L 109 (351)
Q Consensus 57 ~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~----~---~~~~~~~-----------------~ 109 (351)
.|..|.+-++..+.. .........+.+..++.+|-.+.+++ .-. . ....+|. .
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 466777777665432 33344445667777777775554433 211 1 1111221 1
Q ss_pred cc-ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC--C
Q 048511 110 LI-GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP--D 186 (351)
Q Consensus 110 ~~-~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~--~ 186 (351)
+. .+-+.|.|+.|. |++.. +++-. |..|.+|++...... +..+.......+....++-+|+| +
T Consensus 118 Ldteavg~i~cvew~------Pns~k------lasm~-dn~i~l~~l~ess~~-vaev~ss~s~e~~~~ftsg~WspHHd 183 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWE------PNSDK------LASMD-DNNIVLWSLDESSKI-VAEVLSSESAEMRHSFTSGAWSPHHD 183 (370)
T ss_pred CCHHHhCceeeEEEc------CCCCe------eEEec-cCceEEEEcccCcch-heeecccccccccceecccccCCCCc
Confidence 22 345689999999 56666 77665 888999999983221 33333222334566788999999 5
Q ss_pred CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCC-EEEEEeCCCcEEEEcCCCccccccCccceE
Q 048511 187 GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSD-YLLSVSHDQTTRVFAPWKNVASLMGENSWH 265 (351)
Q Consensus 187 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 265 (351)
++.+++ ..|+++..||+++.. +....-.+|...|..+.|+|+.+ +|++|+.||.|+|||.+..+ .
T Consensus 184 gnqv~t-t~d~tl~~~D~RT~~----~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk---------~ 249 (370)
T KOG1007|consen 184 GNQVAT-TSDSTLQFWDLRTMK----KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK---------F 249 (370)
T ss_pred cceEEE-eCCCcEEEEEccchh----hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC---------c
Confidence 665554 568899999999864 33444457888999999999865 47899999999999999887 3
Q ss_pred EeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 266 EVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 266 ~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
++..+.+|.+.|+++.|+|. -.++|++||.|..|.+|...
T Consensus 250 pv~el~~HsHWvW~VRfn~~-hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 250 PVQELPGHSHWVWAVRFNPE-HDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred cccccCCCceEEEEEEecCc-cceEEEecCCCceeEEEecc
Confidence 77888899999999999993 47899999999999999854
No 176
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.4e-17 Score=134.16 Aligned_cols=250 Identities=18% Similarity=0.237 Sum_probs=179.4
Q ss_pred EEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCC------CcccceeecccccceeeeEeeecCCe
Q 048511 21 RACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLAL------RGSSANTQSTYRKEVISLASYIEGPV 94 (351)
Q Consensus 21 ~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (351)
+...+.+|.+.|+++.|+ .++++|++|+.|..+++|++.. .+.+.....++...+.+++|...+..
T Consensus 48 ~qKD~~~H~GCiNAlqFS--------~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~ 119 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFS--------HNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRF 119 (609)
T ss_pred hhhhhhhhccccceeeec--------cCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCee
Confidence 344577899999999999 8899999999999999999853 34455555666789999999999999
Q ss_pred EEecCCceeEEEEEe-------ccccc---cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEE
Q 048511 95 LVAGSSSYQVSVESL-------LIGHE---DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMN 164 (351)
Q Consensus 95 l~~~~~~~~~~~~~~-------~~~h~---~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 164 (351)
+.+|...+.+..... ...|. +.|+.+..+| ..+. |++.+.++.|.+||.+.... ...
T Consensus 120 ~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P------~DN~------~~~~t~~~~V~~~D~Rd~~~-~~~ 186 (609)
T KOG4227|consen 120 LYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP------TDNT------LIVVTRAKLVSFIDNRDRQN-PIS 186 (609)
T ss_pred EecCCCcceeEeeecccceeeeeecccCcccceeecccCC------CCce------EEEEecCceEEEEeccCCCC-CCc
Confidence 999998887643221 22344 4899999994 5667 99999999999999997321 223
Q ss_pred EEEeccccccccceEEEEEcCCC-CEEEEEeeCCeEEEEEcccCcccCcc--cccccccccccEEEEEeecCCCEEEEEe
Q 048511 165 VVTVGELSHSALGFYGGHWSPDG-RSILAHGYGGAFHLWRNVGVDIDNWQ--PQKVPSGHFAAVMDISWSRSSDYLLSVS 241 (351)
Q Consensus 165 ~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~~~~~~v~~v~~sp~~~~l~s~~ 241 (351)
.+.+. ......+++.|+|.. .+|++.+..+-+.+||++......++ ....+......-.++.|+|+|..|++--
T Consensus 187 ~~~~A---N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR 263 (609)
T KOG4227|consen 187 LVLPA---NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR 263 (609)
T ss_pred eeeec---CCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh
Confidence 33322 334567899999965 57778888889999999876421111 1112222223346788999999998877
Q ss_pred CCCcEEEEcCCCccccccCccceEEecccc----c--cccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 242 HDQTTRVFAPWKNVASLMGENSWHEVARPQ----V--HGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 242 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----~--~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
....-.+||+-...+ .+..+. + ....+.+++|.. ...+++|+++-.|++|.++
T Consensus 264 R~~~P~~~D~~S~R~---------~V~k~D~N~~GY~N~~T~KS~~F~~---D~~v~tGSD~~~i~~WklP 322 (609)
T KOG4227|consen 264 RGKCPLYFDFISQRC---------FVLKSDHNPNGYCNIKTIKSMTFID---DYTVATGSDHWGIHIWKLP 322 (609)
T ss_pred ccCCCEEeeeecccc---------eeEeccCCCCcceeeeeeeeeeeec---ceeeeccCcccceEEEecC
Confidence 666677888876542 111111 1 112477888875 5569999999999999986
No 177
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.78 E-value=9.8e-18 Score=136.75 Aligned_cols=173 Identities=24% Similarity=0.366 Sum_probs=141.8
Q ss_pred CCceeEEEeeCCcccCCCCCcc-EEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEE
Q 048511 29 TDWIRSLDFSLPVCTSGEAISI-LLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVE 107 (351)
Q Consensus 29 ~~~V~~l~~~~~~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 107 (351)
..+|..+.|. ++.. .|+||+.|..|++|.++....-. .+..+...
T Consensus 13 ~~pv~s~dfq--------~n~~~~laT~G~D~~iriW~v~r~~~~~--------------------------~~~~V~y~ 58 (434)
T KOG1009|consen 13 HEPVYSVDFQ--------KNSLNKLATAGGDKDIRIWKVNRSEPGG--------------------------GDMKVEYL 58 (434)
T ss_pred CCceEEEEec--------cCcccceecccCccceeeeeeeecCCCC--------------------------CceeEEEe
Confidence 3589999998 4444 99999999999999998654321 11345667
Q ss_pred EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC-------C-----CcceEEEEEeccccccc
Q 048511 108 SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK-------T-----TGIWMNVVTVGELSHSA 175 (351)
Q Consensus 108 ~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-------~-----~~~~~~~~~~~~~~~~~ 175 (351)
..+..|...|+++.|+ ++|++ ||+|+.+|.|.+|-... . ...++.... ..+|.
T Consensus 59 s~Ls~H~~aVN~vRf~------p~gel------LASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~---lr~h~ 123 (434)
T KOG1009|consen 59 SSLSRHTRAVNVVRFS------PDGEL------LASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKV---LRGHR 123 (434)
T ss_pred ecccCCcceeEEEEEc------CCcCe------eeecCCCceEEEEEecCcCCccccchhhhCccceEEEEE---ecccc
Confidence 7899999999999999 79999 99999999999998761 0 112332222 34688
Q ss_pred cceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511 176 LGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 176 ~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
..|+.++|+|++.++++++.|..+++||+..+ +....+..|...+..++|.|-.+++++-+.|...+.+++...+
T Consensus 124 ~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G-----~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~ 198 (434)
T KOG1009|consen 124 DDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG-----QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQ 198 (434)
T ss_pred cchhhhhccCCCceeeeeeccceEEEEEeccc-----eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeee
Confidence 89999999999999999999999999999998 6788999999999999999999999999999877777765443
No 178
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=4.7e-18 Score=143.73 Aligned_cols=247 Identities=17% Similarity=0.129 Sum_probs=162.7
Q ss_pred EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511 20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS 99 (351)
Q Consensus 20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (351)
.....+.||++.|+|++|+ .+|.+|++||.|-.+.|||....+.+..+.
T Consensus 41 ~lE~eL~GH~GCVN~LeWn--------~dG~lL~SGSDD~r~ivWd~~~~KllhsI~----------------------- 89 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWN--------ADGELLASGSDDTRLIVWDPFEYKLLHSIS----------------------- 89 (758)
T ss_pred chhhhhccccceecceeec--------CCCCEEeecCCcceEEeecchhcceeeeee-----------------------
Confidence 3445789999999999999 899999999999999999998665544333
Q ss_pred CceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceE---EEEEecccccccc
Q 048511 100 SSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWM---NVVTVGELSHSAL 176 (351)
Q Consensus 100 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~ 176 (351)
.||...|.+++|.|.. +.++ +++|+.|..|+++|+...++.-. ...+......|..
T Consensus 90 -----------TgHtaNIFsvKFvP~t----nnri------v~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~ 148 (758)
T KOG1310|consen 90 -----------TGHTANIFSVKFVPYT----NNRI------VLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTD 148 (758)
T ss_pred -----------cccccceeEEeeeccC----CCeE------EEeccCcceEEEEecccccccccccCccchhhhhhhhhh
Confidence 6799999999999853 4556 99999999999999985211100 0111222346778
Q ss_pred ceEEEEEcCCC-CEEEEEeeCCeEEEEEcccCcccC--cccc---cccccccccEEEEEeecCC-CEEEEEeCCCcEEEE
Q 048511 177 GFYGGHWSPDG-RSILAHGYGGAFHLWRNVGVDIDN--WQPQ---KVPSGHFAAVMDISWSRSS-DYLLSVSHDQTTRVF 249 (351)
Q Consensus 177 ~i~~i~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~--~~~~---~~~~~~~~~v~~v~~sp~~-~~l~s~~~dg~i~vw 249 (351)
.|..++-.|++ ..+.+++.||+|+-||++...... ..+. ..+...--...++..+|.. .+|++|+.|-..++|
T Consensus 149 rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLY 228 (758)
T KOG1310|consen 149 RVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLY 228 (758)
T ss_pred hhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhh
Confidence 88899999988 788999999999999998743110 0011 1111112345678889854 578999999999999
Q ss_pred cCCCccccccCccceE----------Eeccc-cccc--------c---ceeEEEEeeeCCCcEEEEecCCCeEEEEecC-
Q 048511 250 APWKNVASLMGENSWH----------EVARP-QVHG--------H---DINCVTIIQGKGNHRFVSGADEKVARVFEAP- 306 (351)
Q Consensus 250 d~~~~~~~~~~~~~~~----------~~~~~-~~~~--------~---~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~- 306 (351)
|.+....... ..+. .+..+ .+|- . .++-+.|+| +|.-|+..-..-.|++||+.
T Consensus 229 D~Rr~lks~~--s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnp--NGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 229 DRRRVLKSFR--SDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNP--NGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred hhhhhccCCC--CCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECC--CCcEEEEeeCCeEEEEEeecC
Confidence 9543221110 0000 01000 0111 1 156677888 65555444445589999986
Q ss_pred -chhhhceeeccccccc
Q 048511 307 -LSFLKTLNHATFQESS 322 (351)
Q Consensus 307 -~~~~~~~~~~~~~~~~ 322 (351)
......+.+...+..+
T Consensus 305 ~~~~~~y~~~~~~~~~~ 321 (758)
T KOG1310|consen 305 DKSPTPYFLPIEDSNKK 321 (758)
T ss_pred CCCceeecCcccccccC
Confidence 3344444444443333
No 179
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=7.3e-18 Score=138.26 Aligned_cols=203 Identities=15% Similarity=0.154 Sum_probs=151.2
Q ss_pred eEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccc
Q 048511 33 RSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIG 112 (351)
Q Consensus 33 ~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 112 (351)
.+++|+ .+|..|++++.||++|||++....... ....
T Consensus 148 k~vaf~--------~~gs~latgg~dg~lRv~~~Ps~~t~l-----------------------------------~e~~ 184 (398)
T KOG0771|consen 148 KVVAFN--------GDGSKLATGGTDGTLRVWEWPSMLTIL-----------------------------------EEIA 184 (398)
T ss_pred eEEEEc--------CCCCEeeeccccceEEEEecCcchhhh-----------------------------------hhHh
Confidence 678898 889999999999999999976544332 2345
Q ss_pred cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCC---CE
Q 048511 113 HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG---RS 189 (351)
Q Consensus 113 h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~---~~ 189 (351)
|...|.++.|+ +|+++ |++-+.| ..+||+.++ +..+..... ......+..+.|+.++ .+
T Consensus 185 ~~~eV~DL~FS------~dgk~------lasig~d-~~~VW~~~~--g~~~a~~t~---~~k~~~~~~cRF~~d~~~~~l 246 (398)
T KOG0771|consen 185 HHAEVKDLDFS------PDGKF------LASIGAD-SARVWSVNT--GAALARKTP---FSKDEMFSSCRFSVDNAQETL 246 (398)
T ss_pred hcCccccceeC------CCCcE------EEEecCC-ceEEEEecc--CchhhhcCC---cccchhhhhceecccCCCceE
Confidence 88899999999 89999 9999999 899999998 644433321 1233446667887766 22
Q ss_pred --EEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEe
Q 048511 190 --ILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEV 267 (351)
Q Consensus 190 --l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 267 (351)
++.....+.|+.||+.......+-..++...-...|++++.+++|++++.|+.||.|.|++....+. ..
T Consensus 247 ~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~---------~~ 317 (398)
T KOG0771|consen 247 RLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR---------LQ 317 (398)
T ss_pred EEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee---------eE
Confidence 2333344778888875432211112222222344799999999999999999999999999977662 33
Q ss_pred ccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511 268 ARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 268 ~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 307 (351)
...+.|..-|+.+.|+| +.+++++.+.|..++|..+..
T Consensus 318 ~vk~aH~~~VT~ltF~P--dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 318 YVKEAHLGFVTGLTFSP--DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eehhhheeeeeeEEEcC--CcCcccccccCCceeEEEEee
Confidence 44568999999999999 999999999999999998764
No 180
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.6e-16 Score=140.15 Aligned_cols=279 Identities=13% Similarity=0.147 Sum_probs=196.4
Q ss_pred CCCCCceEEEEEccC-CCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccc
Q 048511 1 MGGLDNKIHLYRGQR-TGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTY 79 (351)
Q Consensus 1 tg~~dg~i~vw~~~~-~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~ 79 (351)
+|..||.|.+|.--. .+.-.....+.-|.++|+++.|+ .+|.+|+|||..+.+.+|.+.+++ +......
T Consensus 222 a~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS--------~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRL 291 (792)
T KOG1963|consen 222 AGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFS--------SDGAYLLSGGREGVLVLWQLETGK--KQFLPRL 291 (792)
T ss_pred EeccCCcEEEEeccccccccccceEEEecccccceeEEe--------cCCceEeecccceEEEEEeecCCC--ccccccc
Confidence 467899999996433 12224456788999999999999 899999999999999999999887 3333344
Q ss_pred ccceeeeEeeecCCeEEecCCceeEEEEEe--------cc-----------ccccceEEEEecCCCCCCCCCcccCCCce
Q 048511 80 RKEVISLASYIEGPVLVAGSSSYQVSVESL--------LI-----------GHEDWVYSVQWEPPSTAPSDGVSCQQPSS 140 (351)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~-----------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~ 140 (351)
...+..+.++|++...++...|..+.++.. +. +..+-.+.+.++| ..+.
T Consensus 292 gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp------r~~~------ 359 (792)
T KOG1963|consen 292 GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP------RTNS------ 359 (792)
T ss_pred CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC------CCCc------
Confidence 668999999999999888877877765542 11 1233456677774 3344
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEecccccc------ccceEEEEEcCCCCEEEEEee--------C--CeEEEEEc
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHS------ALGFYGGHWSPDGRSILAHGY--------G--GAFHLWRN 204 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~------~~~i~~i~~~~~~~~l~~~~~--------d--g~i~~~d~ 204 (351)
++-.+..+.|.+||+.+ ...+..+.+.....+ ...++.++.+..|.++++... | -.+++|-.
T Consensus 360 ~vln~~~g~vQ~ydl~t--d~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~ 437 (792)
T KOG1963|consen 360 LVLNGHPGHVQFYDLYT--DSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQY 437 (792)
T ss_pred eeecCCCceEEEEeccc--cceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEE
Confidence 78888999999999998 444444444332222 234677788888999988642 3 35788876
Q ss_pred ccCcccCccccc-ccccccccEEEEEeecC--CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEE
Q 048511 205 VGVDIDNWQPQK-VPSGHFAAVMDISWSRS--SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVT 281 (351)
Q Consensus 205 ~~~~~~~~~~~~-~~~~~~~~v~~v~~sp~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 281 (351)
..... .|.+.. ....|...+...++.+. ...+++++.||.++||-+...+........|.+...-..|..+++.++
T Consensus 438 n~~~k-t~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~ 516 (792)
T KOG1963|consen 438 NPNSK-TFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALC 516 (792)
T ss_pred cCCcc-eeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchh
Confidence 54321 122222 23357766666666542 237899999999999998655443333457777655556888999999
Q ss_pred EeeeCCCcEEEEecCCCeEEEEecCc
Q 048511 282 IIQGKGNHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 282 ~~~~~~~~~l~s~~~dg~v~vw~~~~ 307 (351)
|+. || -+++.+.|++|.+||...
T Consensus 517 fs~--dG-slla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 517 FSQ--DG-SLLAVSFDDTITIWDYDT 539 (792)
T ss_pred hcC--CC-cEEEEecCCEEEEecCCC
Confidence 998 77 556666888999999774
No 181
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.6e-17 Score=130.71 Aligned_cols=202 Identities=16% Similarity=0.148 Sum_probs=147.4
Q ss_pred cEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCC
Q 048511 50 ILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAP 129 (351)
Q Consensus 50 ~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~ 129 (351)
..+|++-..|.|++||..+++.+. .++++...++.+.|....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~-----------------------------------~fk~~~~~~N~vrf~~~d--- 82 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLE-----------------------------------EFKGPPATTNGVRFISCD--- 82 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhh-----------------------------------eecCCCCcccceEEecCC---
Confidence 568888889999999999876553 346677778888887310
Q ss_pred CCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccccc-ccceEEEEEcCCCCEEEEEe----eCCeEEEEEc
Q 048511 130 SDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHS-ALGFYGGHWSPDGRSILAHG----YGGAFHLWRN 204 (351)
Q Consensus 130 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~----~dg~i~~~d~ 204 (351)
.... +.+|+.||+|++||+|... ....+... .+ ..+..+++....++.+++|. .+-.|.+||.
T Consensus 83 -s~h~------v~s~ssDG~Vr~wD~Rs~~--e~a~~~~~---~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDv 150 (376)
T KOG1188|consen 83 -SPHG------VISCSSDGTVRLWDIRSQA--ESARISWT---QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDV 150 (376)
T ss_pred -CCCe------eEEeccCCeEEEEEeecch--hhhheecc---CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEe
Confidence 2233 9999999999999999843 32233221 23 24677788777788888876 3568999999
Q ss_pred ccCcccCcc-cccccccccccEEEEEeecC-CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEE
Q 048511 205 VGVDIDNWQ-PQKVPSGHFAAVMDISWSRS-SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTI 282 (351)
Q Consensus 205 ~~~~~~~~~-~~~~~~~~~~~v~~v~~sp~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 282 (351)
+..+ + +..-...|...|++++|+|. .++|++||.||.|.|||+....... .+....-|...|.++.|
T Consensus 151 R~~q----q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeD-------aL~~viN~~sSI~~igw 219 (376)
T KOG1188|consen 151 RSEQ----QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEED-------ALLHVINHGSSIHLIGW 219 (376)
T ss_pred cccc----chhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchh-------hHHHhhcccceeeeeee
Confidence 9875 4 33445679999999999994 5789999999999999997664221 22222356777999999
Q ss_pred eeeCCCcEEEEecCCCeEEEEecC-chhhhce
Q 048511 283 IQGKGNHRFVSGADEKVARVFEAP-LSFLKTL 313 (351)
Q Consensus 283 ~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~ 313 (351)
.. +.-..|.+-+......+|+++ +.....+
T Consensus 220 ~~-~~ykrI~clTH~Etf~~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 220 LS-KKYKRIMCLTHMETFAIYELEDGSEETWL 250 (376)
T ss_pred ec-CCcceEEEEEccCceeEEEccCCChhhcc
Confidence 87 223468899999999999987 5544333
No 182
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.77 E-value=8.4e-17 Score=135.86 Aligned_cols=239 Identities=15% Similarity=0.159 Sum_probs=164.3
Q ss_pred CCccEEEEeeCCCcEEEEecCCCcccceeecc---cccceeeeEe-----eecCCeEEecCCceeEEEEEecc-------
Q 048511 47 AISILLVSSSQDKVIRIWKLALRGSSANTQST---YRKEVISLAS-----YIEGPVLVAGSSSYQVSVESLLI------- 111 (351)
Q Consensus 47 ~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~------- 111 (351)
..|++|+-.-. ..+.+|+.+....+...... ......+-.| .+.+.-+.++-..+.+..+....
T Consensus 133 ~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklf 211 (636)
T KOG2394|consen 133 GKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLF 211 (636)
T ss_pred CCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHHHHhh
Confidence 45666654432 35888888743322111110 1112222222 34566677777776665544311
Q ss_pred -----ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCC------------CcceEEEE--------
Q 048511 112 -----GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKT------------TGIWMNVV-------- 166 (351)
Q Consensus 112 -----~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~------------~~~~~~~~-------- 166 (351)
-....|+|+.|.| -+..+ |+.+..+|.+.+||.... ++......
T Consensus 212 ne~r~i~ktsvT~ikWvp-----g~~~~------Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~r 280 (636)
T KOG2394|consen 212 NEERLINKSSVTCIKWVP-----GSDSL------FLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTR 280 (636)
T ss_pred hhcccccccceEEEEEEe-----CCCce------EEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccC
Confidence 1236799999997 55566 889999999999987531 01100000
Q ss_pred -EeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCc
Q 048511 167 -TVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQT 245 (351)
Q Consensus 167 -~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~ 245 (351)
.+.........|..++|+|||++||+.+.||.++|||..+. .++-.++.--+...+++|||||+||++|++|--
T Consensus 281 NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~-----eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDL 355 (636)
T KOG2394|consen 281 NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ-----ELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDL 355 (636)
T ss_pred CccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH-----HHHHHHHhhccceEEEEEcCCccEEEecCCcce
Confidence 01111223457889999999999999999999999999986 445566666788999999999999999999999
Q ss_pred EEEEcCCCccccccCccceEEeccccccccceeEEEEeee---------------------------------C------
Q 048511 246 TRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQG---------------------------------K------ 286 (351)
Q Consensus 246 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------------------------~------ 286 (351)
|.||.+..++ .+.+-++|...|+.++|.|. .
T Consensus 356 VtVwSf~erR----------VVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s 425 (636)
T KOG2394|consen 356 VTVWSFEERR----------VVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLS 425 (636)
T ss_pred EEEEEeccce----------EEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCccc
Confidence 9999998887 78888899999999999830 0
Q ss_pred -------CCcEEEEecCCCeEEEEecCchhhhc
Q 048511 287 -------GNHRFVSGADEKVARVFEAPLSFLKT 312 (351)
Q Consensus 287 -------~~~~l~s~~~dg~v~vw~~~~~~~~~ 312 (351)
....|.+.+.|-.+.+||+....+..
T Consensus 426 ~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 426 SFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred ccccccceEEEeecccccceEEEEecchhhccc
Confidence 12468889999999999987554443
No 183
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.77 E-value=1.1e-18 Score=154.19 Aligned_cols=226 Identities=18% Similarity=0.246 Sum_probs=166.7
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
||+.|..++||..++ + .++....||.+.|+.++.+ .+.-+++++|.|..|++|.+..+..+
T Consensus 207 tgsdd~lvKiwS~et-~--~~lAs~rGhs~ditdlavs--------~~n~~iaaaS~D~vIrvWrl~~~~pv-------- 267 (1113)
T KOG0644|consen 207 TGSDDRLVKIWSMET-A--RCLASCRGHSGDITDLAVS--------SNNTMIAAASNDKVIRVWRLPDGAPV-------- 267 (1113)
T ss_pred ecCccceeeeeeccc-h--hhhccCCCCccccchhccc--------hhhhhhhhcccCceEEEEecCCCchH--------
Confidence 689999999999888 6 6788999999999999999 77889999999999999999987654
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCC--
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKT-- 158 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-- 158 (351)
..+.+|++.|++++|+| .++.+.||++++||.+-.
T Consensus 268 ---------------------------svLrghtgavtaiafsP----------------~~sss~dgt~~~wd~r~~~~ 304 (1113)
T KOG0644|consen 268 ---------------------------SVLRGHTGAVTAIAFSP----------------RASSSDDGTCRIWDARLEPR 304 (1113)
T ss_pred ---------------------------HHHhccccceeeeccCc----------------cccCCCCCceEecccccccc
Confidence 45689999999999997 778889999999998820
Q ss_pred ----------CcceEEEEEecc-----------ccccccceEEEEEcCCC-----------CEEEEEeeCCeEEEEEccc
Q 048511 159 ----------TGIWMNVVTVGE-----------LSHSALGFYGGHWSPDG-----------RSILAHGYGGAFHLWRNVG 206 (351)
Q Consensus 159 ----------~~~~~~~~~~~~-----------~~~~~~~i~~i~~~~~~-----------~~l~~~~~dg~i~~~d~~~ 206 (351)
++.....+.+.. .....-.+.+++|.... .+.+++-.+-.+++|++.+
T Consensus 305 ~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~ 384 (1113)
T KOG0644|consen 305 IYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT 384 (1113)
T ss_pred ccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeeccc
Confidence 011111111000 00000111222232222 2334444566788999888
Q ss_pred CcccCcccccccccccccEEEEEeecCC-CEEEEEeCCCcEEEEcCCCccccccCccceEEeccc-cccccceeEEEEee
Q 048511 207 VDIDNWQPQKVPSGHFAAVMDISWSRSS-DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARP-QVHGHDINCVTIIQ 284 (351)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~ 284 (351)
+ +..+.+.+|...+..+.++|-. ++..+++.||...|||+..+. ++... .+| ..+...+|++
T Consensus 385 g-----~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~----------pik~y~~gh-~kl~d~kFSq 448 (1113)
T KOG0644|consen 385 G-----QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI----------PIKHYFIGH-GKLVDGKFSQ 448 (1113)
T ss_pred c-----hhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCC----------cceeeeccc-ceeeccccCC
Confidence 7 6688888999999999999954 555788999999999998876 22211 244 3466778999
Q ss_pred eCCCcEEEEecCCCeEEEEecC
Q 048511 285 GKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 285 ~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
+|..++...+-|.+.|....
T Consensus 449 --dgts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 449 --DGTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred --CCceEecCCCCCceEEeccC
Confidence 89999999899999998754
No 184
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=2.8e-16 Score=142.52 Aligned_cols=263 Identities=14% Similarity=0.142 Sum_probs=178.7
Q ss_pred ceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccc--ccceeeeEe--eecCCeEEecCCceeEEE
Q 048511 31 WIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTY--RKEVISLAS--YIEGPVLVAGSSSYQVSV 106 (351)
Q Consensus 31 ~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~l~~~~~~~~~~~ 106 (351)
.-..+.|+ +-...++++...-.|++||.+.++.+..+.... ...+..+.+ -.+...+.++..++.+++
T Consensus 1066 ~pk~~~~h--------pf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRI 1137 (1387)
T KOG1517|consen 1066 PPKTLKFH--------PFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRI 1137 (1387)
T ss_pred CCceeeec--------CCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEE
Confidence 45567777 667789988877789999999888766554433 233444433 446678889999999999
Q ss_pred EEecccc-ccceEEEEecCCCCCC--CCC-----cccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccce
Q 048511 107 ESLLIGH-EDWVYSVQWEPPSTAP--SDG-----VSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGF 178 (351)
Q Consensus 107 ~~~~~~h-~~~v~~l~~~p~~~~~--~~~-----~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i 178 (351)
|+.+..- ..+=.--+|.+-.... ..+ ..+++...|++++.-..|+|||... ......+.. +....+
T Consensus 1138 wk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~--E~~~~diP~----~s~t~v 1211 (1387)
T KOG1517|consen 1138 WKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHK--EQVVADIPY----GSSTLV 1211 (1387)
T ss_pred ecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccc--ceeEeeccc----CCCccc
Confidence 8876543 1111111222110000 000 0023334477777789999999997 555555542 334456
Q ss_pred EEEEEcC-CCCEEEEEeeCCeEEEEEcccCcccCccccccccccccc--EEEEEeecCCCE-EEEEeCCCcEEEEcCCCc
Q 048511 179 YGGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAA--VMDISWSRSSDY-LLSVSHDQTTRVFAPWKN 254 (351)
Q Consensus 179 ~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~--v~~v~~sp~~~~-l~s~~~dg~i~vwd~~~~ 254 (351)
+++.-+. .|+.+++|..||.|++||.+....+ .++...+.|... |..+.+.+.|-- |++|+.||.|++||++..
T Consensus 1212 TaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d--s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1212 TALSADLVHGNIIAAGFADGSVRVYDRRMAPPD--SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred eeecccccCCceEEEeecCCceEEeecccCCcc--ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 6655433 4689999999999999999876432 356677778877 999999987644 999999999999999985
Q ss_pred cccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhceeecc
Q 048511 255 VASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLNHAT 317 (351)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~ 317 (351)
.. ..+-.+......++.++++..++ ....+|+|+. +.|+||++.|+.+..++...
T Consensus 1290 ~~-----e~~~~iv~~~~yGs~lTal~VH~--hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~ 1344 (1387)
T KOG1517|consen 1290 SK-----ETFLTIVAHWEYGSALTALTVHE--HAPIIASGSA-QLIKIYSLSGEQLNIIKYNP 1344 (1387)
T ss_pred cc-----cccceeeeccccCccceeeeecc--CCCeeeecCc-ceEEEEecChhhhcccccCc
Confidence 31 12222222222244589999999 8899999999 99999999999888887553
No 185
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.8e-17 Score=137.16 Aligned_cols=274 Identities=15% Similarity=0.168 Sum_probs=194.3
Q ss_pred EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeee--cCCeEEe
Q 048511 20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYI--EGPVLVA 97 (351)
Q Consensus 20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~ 97 (351)
.....|..|.+.|..|.|+ ..|..|+|+|.|..|.+||............++...+....|-| +...++.
T Consensus 133 ~l~~kL~~H~GcVntV~FN--------~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~ 204 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFN--------QRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVT 204 (559)
T ss_pred hhhhcccCCCCccceeeec--------ccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCcee
Confidence 4455788999999999999 89999999999999999999998888888877777777666665 4567777
Q ss_pred cCCceeEEEE-----------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEE
Q 048511 98 GSSSYQVSVE-----------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVV 166 (351)
Q Consensus 98 ~~~~~~~~~~-----------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 166 (351)
.+.++.++.- ..+..|.++|..++..|. .... |.+++.|+.+.-+|++. ......+
T Consensus 205 ~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~-----sp~~------f~S~geD~~v~~~Dlr~--~~pa~~~ 271 (559)
T KOG1334|consen 205 SSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPD-----SPKP------FLSCGEDAVVFHIDLRQ--DVPAEKF 271 (559)
T ss_pred ccccCceeeeeeccccceecceecccccCccceeeecCC-----CCCc------ccccccccceeeeeecc--CCcccee
Confidence 7777777543 235568999999999973 3345 99999999999999998 4333333
Q ss_pred Eeccccccc---cceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCccc-------CcccccccccccccEEEEEeecCCC
Q 048511 167 TVGELSHSA---LGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDID-------NWQPQKVPSGHFAAVMDISWSRSSD 235 (351)
Q Consensus 167 ~~~~~~~~~---~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~-------~~~~~~~~~~~~~~v~~v~~sp~~~ 235 (351)
... ..+. ...+.++.+|... .+++++.|..+++||.+.-... .+.+........-.|++++|+.++.
T Consensus 272 ~cr--~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s 349 (559)
T KOG1334|consen 272 VCR--EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS 349 (559)
T ss_pred eee--ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc
Confidence 211 1222 2577899999765 8899999999999998654321 1222222223345799999997665
Q ss_pred EEEEEeCCCcEEEEcCCCccccccC---ccceEEeccccccccc--eeEEEEeeeCCCcEEEEecCCCeEEEEecC-chh
Q 048511 236 YLLSVSHDQTTRVFAPWKNVASLMG---ENSWHEVARPQVHGHD--INCVTIIQGKGNHRFVSGADEKVARVFEAP-LSF 309 (351)
Q Consensus 236 ~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~ 309 (351)
-|.+.-.|-.|++|.-..+...... ...-.....+++|... |..+-|-. +...++++|++-|.|.||+-. +++
T Consensus 350 ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfG-PrsEyVvSGSDCGhIFiW~K~t~ei 428 (559)
T KOG1334|consen 350 ELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFG-PRSEYVVSGSDCGHIFIWDKKTGEI 428 (559)
T ss_pred ceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeecc-CccceEEecCccceEEEEecchhHH
Confidence 5555567888999954433321100 0001111225677543 88888754 378999999999999999977 777
Q ss_pred hhceeecc
Q 048511 310 LKTLNHAT 317 (351)
Q Consensus 310 ~~~~~~~~ 317 (351)
++.+++-.
T Consensus 429 i~~MegDr 436 (559)
T KOG1334|consen 429 IRFMEGDR 436 (559)
T ss_pred HHHhhccc
Confidence 77776543
No 186
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.75 E-value=2.6e-17 Score=141.60 Aligned_cols=166 Identities=16% Similarity=0.250 Sum_probs=127.3
Q ss_pred ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC-CCCEEEE
Q 048511 114 EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP-DGRSILA 192 (351)
Q Consensus 114 ~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~ 192 (351)
...|+.+.|.| -|... |+.++.||.|++|.+..........-.-..+..|...|+++.|+| -...|++
T Consensus 627 gt~vtDl~WdP-----FD~~r------LAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~ 695 (1012)
T KOG1445|consen 627 GTLVTDLHWDP-----FDDER------LAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAV 695 (1012)
T ss_pred CceeeecccCC-----CChHH------eeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhh
Confidence 35699999998 77778 999999999999999874222211111122347888999999999 4568899
Q ss_pred EeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccc
Q 048511 193 HGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQV 272 (351)
Q Consensus 193 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 272 (351)
++.|.+|++||+.+. +....+.+|.+.|.+++|||+|+.+++.+.||+|+||..+.+.. ++..-.+
T Consensus 696 asyd~Ti~lWDl~~~-----~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~---------pv~Eg~g 761 (1012)
T KOG1445|consen 696 ASYDSTIELWDLANA-----KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ---------PVYEGKG 761 (1012)
T ss_pred hhccceeeeeehhhh-----hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC---------ccccCCC
Confidence 999999999999997 55778999999999999999999999999999999999988762 2222111
Q ss_pred c-ccceeEEEEeeeCCCcEEEEecCCC----eEEEEecC
Q 048511 273 H-GHDINCVTIIQGKGNHRFVSGADEK----VARVFEAP 306 (351)
Q Consensus 273 ~-~~~i~~~~~~~~~~~~~l~s~~~dg----~v~vw~~~ 306 (351)
. +..--.+.|.- +++++++.+.|. .|.+||..
T Consensus 762 pvgtRgARi~wac--dgr~viv~Gfdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 762 PVGTRGARILWAC--DGRIVIVVGFDKSSERQVQMYDAQ 798 (1012)
T ss_pred CccCcceeEEEEe--cCcEEEEecccccchhhhhhhhhh
Confidence 1 12234566766 788888777654 57788754
No 187
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.75 E-value=4.5e-15 Score=132.00 Aligned_cols=263 Identities=25% Similarity=0.371 Sum_probs=188.8
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCC-ceeEEEe-eCCcccCCCCCcc-EEEEeeC-CCcEEEEecCCCcccceeec
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTD-WIRSLDF-SLPVCTSGEAISI-LLVSSSQ-DKVIRIWKLALRGSSANTQS 77 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~-~V~~l~~-~~~~~~~~~~~~~-~l~t~~~-dg~i~iwd~~~~~~~~~~~~ 77 (351)
++.|+.+.+|+... +. ..+..+.++.. .+..+.+ . +++. .++..+. |+.+.+|+............
T Consensus 83 ~~~d~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 152 (466)
T COG2319 83 GSSDGTIKLWDLDN-GE-KLIKSLEGLHDSSVSKLALSS--------PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLE 152 (466)
T ss_pred ecCCCcEEEEEcCC-Cc-eeEEEEeccCCCceeeEEEEC--------CCcceEEeccCCCCccEEEEEecCCCeEEEEEe
Confidence 34689999999988 42 24556665443 6777777 6 5565 5555444 99999999987233333344
Q ss_pred ccccceeeeEeeecCCeEEecCC-ceeEEEE--------EeccccccceEEEEecCCCCCCCCCc-ccCCCceeEEeecC
Q 048511 78 TYRKEVISLASYIEGPVLVAGSS-SYQVSVE--------SLLIGHEDWVYSVQWEPPSTAPSDGV-SCQQPSSILSASMD 147 (351)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~--------~~~~~h~~~v~~l~~~p~~~~~~~~~-~~~~~~~l~s~~~d 147 (351)
.+...+..+.+++++..++.+.. ++.+.++ ..+.+|...|.+++|+ +++. . +++++.|
T Consensus 153 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~------~~~~~~d 220 (466)
T COG2319 153 GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFS------PDGGLL------IASGSSD 220 (466)
T ss_pred cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEc------CCcceE------EEEecCC
Confidence 44556778999999998888775 7766555 3456688999999999 5665 4 6666999
Q ss_pred CeEEEEeccCCCcceEE-EEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEE
Q 048511 148 KTMMIWQPEKTTGIWMN-VVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVM 226 (351)
Q Consensus 148 ~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~ 226 (351)
+.|++||... +.... .+. .|.... ...|+|++..+++++.|+.+++|++..... ....+..|...+.
T Consensus 221 ~~i~~wd~~~--~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----~~~~~~~~~~~v~ 288 (466)
T COG2319 221 GTIRLWDLST--GKLLRSTLS-----GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS----LLRTLSGHSSSVL 288 (466)
T ss_pred CcEEEEECCC--CcEEeeecC-----CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc----EEEEEecCCccEE
Confidence 9999998875 55554 232 555554 338999998899999999999999987642 1333367788999
Q ss_pred EEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEe-cCCCeEEEEec
Q 048511 227 DISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSG-ADEKVARVFEA 305 (351)
Q Consensus 227 ~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~-~~dg~v~vw~~ 305 (351)
++.|+|++..+++++.|+.+.+||....... .... ...|...+..+.| . .++..++.+ ..|+.+++|+.
T Consensus 289 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~d~~~~~~~~ 358 (466)
T COG2319 289 SVAFSPDGKLLASGSSDGTVRLWDLETGKLL-------SSLT-LKGHEGPVSSLSF-S-PDGSLLVSGGSDDGTIRLWDL 358 (466)
T ss_pred EEEECCCCCEEEEeeCCCcEEEEEcCCCceE-------EEee-ecccCCceEEEEE-C-CCCCEEEEeecCCCcEEeeec
Confidence 9999998888888988999999988776521 1111 3366667899999 5 343455555 78899999998
Q ss_pred Cch
Q 048511 306 PLS 308 (351)
Q Consensus 306 ~~~ 308 (351)
...
T Consensus 359 ~~~ 361 (466)
T COG2319 359 RTG 361 (466)
T ss_pred CCC
Confidence 743
No 188
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.75 E-value=1.1e-16 Score=141.79 Aligned_cols=226 Identities=19% Similarity=0.202 Sum_probs=158.9
Q ss_pred CCCCCceEEEEEccCCCceE---EE-EeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccccee-
Q 048511 1 MGGLDNKIHLYRGQRTGKFV---RA-CELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANT- 75 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~---~~-~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~- 75 (351)
.|..+|.|.+||+.. +... .+ .....|..+|+.+.|. .+ +.+.-+++++.||.|..|+++.-......
T Consensus 260 gG~y~GqV~lWD~~~-~~~~~~s~ls~~~~sh~~~v~~vvW~----~~--~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~ 332 (555)
T KOG1587|consen 260 GGCYNGQVVLWDLRK-GSDTPPSGLSALEVSHSEPVTAVVWL----QN--EHNTEFFSLSSDGSICSWDTDMLSLPVEGL 332 (555)
T ss_pred eeccCceEEEEEccC-CCCCCCcccccccccCCcCeEEEEEe----cc--CCCCceEEEecCCcEeeeeccccccchhhc
Confidence 478999999999998 4321 11 2234688999999998 22 33356999999999999988754331111
Q ss_pred ----e------cccccceeeeEeeec-CCeEEecCCceeEEE----------------EEeccccccceEEEEecCCCCC
Q 048511 76 ----Q------STYRKEVISLASYIE-GPVLVAGSSSYQVSV----------------ESLLIGHEDWVYSVQWEPPSTA 128 (351)
Q Consensus 76 ----~------~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~----------------~~~~~~h~~~v~~l~~~p~~~~ 128 (351)
. .......+.+.|.+. ...+++|...|.+.. ...+..|.++|+++.++|..
T Consensus 333 ~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~-- 410 (555)
T KOG1587|consen 333 LLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFY-- 410 (555)
T ss_pred ccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCc--
Confidence 1 112345667777764 345666776666532 23456688999999999733
Q ss_pred CCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCC-EEEEEeeCCeEEEEEcccC
Q 048511 129 PSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGV 207 (351)
Q Consensus 129 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~ 207 (351)
..+ |++++ |.+|+||..... ...+ .....+...+++++|||... .++++..||.|.+||+...
T Consensus 411 ---~k~------fls~g-DW~vriWs~~~~-~~Pl-----~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 411 ---PKN------FLSVG-DWTVRIWSEDVI-ASPL-----LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ---cce------eeeec-cceeEeccccCC-CCcc-----hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 233 56665 999999987731 2222 22235566699999999764 7778888999999999766
Q ss_pred cccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCc
Q 048511 208 DIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKN 254 (351)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~ 254 (351)
.. .++.+...+....+.+.|+++|+.|++|...|++.+|++...
T Consensus 475 ~~---~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 475 DE---EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred cc---CCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 53 555555555667788899999999999999999999998543
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=1.2e-15 Score=123.30 Aligned_cols=236 Identities=13% Similarity=0.151 Sum_probs=157.1
Q ss_pred CceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEe
Q 048511 30 DWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL 109 (351)
Q Consensus 30 ~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 109 (351)
..+..+.|+ .+...|..|+.|| .++++........ ........+..+-|+..=-.++.......++++..
T Consensus 6 ~ti~~~~~N--------qd~~~lsvGs~~G-yk~~~~~~~~k~~-~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~ 75 (391)
T KOG2110|consen 6 PTINFIGFN--------QDSTLLSVGSKDG-YKIFSCSPFEKCF-SKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHF 75 (391)
T ss_pred cceeeeeec--------cceeEEEccCCCc-eeEEecCchHHhh-cccCCCeEEEEeecccceeEEEecCCCceEEEEEc
Confidence 346666688 7888899999988 5788776544311 11111223334444433222222222222233222
Q ss_pred ccc-------cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEE
Q 048511 110 LIG-------HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGH 182 (351)
Q Consensus 110 ~~~-------h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 182 (351)
.+. ...+|.++.++ . +. |+++-.+. |+|||++. -+.++++... +.+...+..+.
T Consensus 76 Kk~~~ICe~~fpt~IL~VrmN------r--~R------LvV~Lee~-IyIydI~~--MklLhTI~t~--~~n~~gl~AlS 136 (391)
T KOG2110|consen 76 KKKTTICEIFFPTSILAVRMN------R--KR------LVVCLEES-IYIYDIKD--MKLLHTIETT--PPNPKGLCALS 136 (391)
T ss_pred ccCceEEEEecCCceEEEEEc------c--ce------EEEEEccc-EEEEeccc--ceeehhhhcc--CCCccceEeec
Confidence 111 23457777766 2 22 66665554 99999998 6666666532 23445566666
Q ss_pred EcCCCCEEEEEe--eCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCc-EEEEcCCCcccccc
Q 048511 183 WSPDGRSILAHG--YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQT-TRVFAPWKNVASLM 259 (351)
Q Consensus 183 ~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~-i~vwd~~~~~~~~~ 259 (351)
+++.+.+++.-+ ..|.|.+||..+- +++..+.+|.+.+-+++|+++|.+|||+++.|+ ||||.+.+++.
T Consensus 137 ~n~~n~ylAyp~s~t~GdV~l~d~~nl-----~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k--- 208 (391)
T KOG2110|consen 137 PNNANCYLAYPGSTTSGDVVLFDTINL-----QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK--- 208 (391)
T ss_pred cCCCCceEEecCCCCCceEEEEEcccc-----eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE---
Confidence 666777887643 4599999999886 678899999999999999999999999999887 69999988872
Q ss_pred CccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchh
Q 048511 260 GENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSF 309 (351)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~ 309 (351)
+.++++-.. -..|.+++|++ ++++|++.|+.++|+||.++...
T Consensus 209 ----l~eFRRG~~-~~~IySL~Fs~--ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 209 ----LYEFRRGTY-PVSIYSLSFSP--DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred ----eeeeeCCce-eeEEEEEEECC--CCCeEEEecCCCeEEEEEecccc
Confidence 223322211 23599999999 99999999999999999987443
No 190
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.75 E-value=2.3e-15 Score=133.82 Aligned_cols=239 Identities=26% Similarity=0.331 Sum_probs=181.0
Q ss_pred eeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCc-ccceeecccccceeeeEe-eecCC-eEEec-C
Q 048511 24 ELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRG-SSANTQSTYRKEVISLAS-YIEGP-VLVAG-S 99 (351)
Q Consensus 24 ~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~-~l~~~-~ 99 (351)
.+..|...|.++.+. +.+..++.++.|+.+.+|+..... ...............+.+ .+++. .+... .
T Consensus 60 ~~~~~~~~i~~~~~~--------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (466)
T COG2319 60 LLRGHEDSITSIAFS--------PDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSS 131 (466)
T ss_pred eeeeccceEEEEEEC--------CCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCC
Confidence 456899999999999 889999999999999999998876 333333222224444444 66666 44443 3
Q ss_pred CceeEEEE---------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec-CCeEEEEeccCCCcceEEEEEec
Q 048511 100 SSYQVSVE---------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM-DKTMMIWQPEKTTGIWMNVVTVG 169 (351)
Q Consensus 100 ~~~~~~~~---------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~ 169 (351)
.++.+.++ ..+..|...|..++|+ +++.. +++++. |+.+++|++.. +.....+.
T Consensus 132 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~------~~~~~~~~~~~~~~~~~~--~~~~~~~~-- 195 (466)
T COG2319 132 LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS------PDGKL------LASGSSLDGTIKLWDLRT--GKPLSTLA-- 195 (466)
T ss_pred CCccEEEEEecCCCeEEEEEecCcccEEEEEEC------CCCCE------EEecCCCCCceEEEEcCC--CceEEeec--
Confidence 35555443 4466799999999999 67767 888885 99999999997 55555555
Q ss_pred cccccccceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcccCccccc-ccccccccEEEEEeecCCCEEEEEeCCCcEE
Q 048511 170 ELSHSALGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDIDNWQPQK-VPSGHFAAVMDISWSRSSDYLLSVSHDQTTR 247 (351)
Q Consensus 170 ~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~ 247 (351)
.|...+.+++|+|++. .+++++.|+.|++||...+ .... .+..|.... ...|+|++.++++++.|+.++
T Consensus 196 ---~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~ 266 (466)
T COG2319 196 ---GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG-----KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIR 266 (466)
T ss_pred ---cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC-----cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEE
Confidence 5888999999999998 5555589999999988754 3344 577777765 348999998899999999999
Q ss_pred EEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 248 VFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 248 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
+|+...... .+.....|...+.++.|.| ++..+++++.|+.+++|+..
T Consensus 267 ~~~~~~~~~---------~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~d~~~~~~~~~ 314 (466)
T COG2319 267 LWDLRSSSS---------LLRTLSGHSSSVLSVAFSP--DGKLLASGSSDGTVRLWDLE 314 (466)
T ss_pred EeeecCCCc---------EEEEEecCCccEEEEEECC--CCCEEEEeeCCCcEEEEEcC
Confidence 999987761 1111156778899999999 78888888888999999876
No 191
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=8.8e-17 Score=122.86 Aligned_cols=221 Identities=15% Similarity=0.101 Sum_probs=148.0
Q ss_pred ceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEec
Q 048511 31 WIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLL 110 (351)
Q Consensus 31 ~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 110 (351)
.|.+-+++ |.+++|+.|..+|.|.+..+..-..-.... .|+ ..+-..
T Consensus 12 tvf~qa~s--------p~~~~l~agn~~G~iav~sl~sl~s~sa~~--------------~gk-----------~~iv~e 58 (325)
T KOG0649|consen 12 TVFAQAIS--------PSKQYLFAGNLFGDIAVLSLKSLDSGSAEP--------------PGK-----------LKIVPE 58 (325)
T ss_pred HHHHHhhC--------CcceEEEEecCCCeEEEEEehhhhccccCC--------------CCC-----------cceeec
Confidence 45566777 779999999999999999987532211100 000 111234
Q ss_pred cccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcc------eEEEEEeccccccccceEEEEEc
Q 048511 111 IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGI------WMNVVTVGELSHSALGFYGGHWS 184 (351)
Q Consensus 111 ~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~i~~i~~~ 184 (351)
++|.++|+.++|.. .+ |++|+ ||.|+-|..+..... +....+...-...-..|..+.+.
T Consensus 59 qahdgpiy~~~f~d--------~~------Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ld 123 (325)
T KOG0649|consen 59 QAHDGPIYYLAFHD--------DF------LLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLD 123 (325)
T ss_pred cccCCCeeeeeeeh--------hh------eeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEec
Confidence 78999999999982 23 66665 599999988752210 00011100001122358899999
Q ss_pred CCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccce
Q 048511 185 PDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSW 264 (351)
Q Consensus 185 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 264 (351)
|..+.++.++.|+.++-||++++ +..+.+++|...|.++.-......+++|++||++||||+++.+... .+
T Consensus 124 P~enSi~~AgGD~~~y~~dlE~G-----~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~----~i 194 (325)
T KOG0649|consen 124 PSENSILFAGGDGVIYQVDLEDG-----RIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS----MI 194 (325)
T ss_pred cCCCcEEEecCCeEEEEEEecCC-----EEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeE----Ee
Confidence 98888888889999999999998 4578899999999999986656679999999999999999988432 11
Q ss_pred EEec---ccccc-ccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhce
Q 048511 265 HEVA---RPQVH-GHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTL 313 (351)
Q Consensus 265 ~~~~---~~~~~-~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~ 313 (351)
.... .++.| +..|-+++. +..++++|+.- .+.+|.++ ......|
T Consensus 195 e~yk~~~~lRp~~g~wigala~----~edWlvCGgGp-~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 195 EPYKNPNLLRPDWGKWIGALAV----NEDWLVCGGGP-KLSLWHLRSSESTCVF 243 (325)
T ss_pred ccccChhhcCcccCceeEEEec----cCceEEecCCC-ceeEEeccCCCceEEE
Confidence 1111 11122 234666665 45788887654 67899987 4444433
No 192
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.75 E-value=6.9e-17 Score=136.41 Aligned_cols=204 Identities=17% Similarity=0.170 Sum_probs=153.9
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK 81 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~ 81 (351)
++.||.+.|.+-.. .......+|.++|.+-.|+ ++|.-|+|+|.||.|++|.-...-.
T Consensus 81 ~s~DGkf~il~k~~----rVE~sv~AH~~A~~~gRW~--------~dGtgLlt~GEDG~iKiWSrsGMLR---------- 138 (737)
T KOG1524|consen 81 CSNDGRFVILNKSA----RVERSISAHAAAISSGRWS--------PDGAGLLTAGEDGVIKIWSRSGMLR---------- 138 (737)
T ss_pred EcCCceEEEecccc----hhhhhhhhhhhhhhhcccC--------CCCceeeeecCCceEEEEeccchHH----------
Confidence 46788888876554 3445778999999999999 8899999999999999998543211
Q ss_pred ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcc
Q 048511 82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGI 161 (351)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 161 (351)
.++.....+|+|++|.| +.+- ++-+ ..+.+.|=-+.. ..
T Consensus 139 --------------------------Stl~Q~~~~v~c~~W~p------~S~~------vl~c-~g~h~~IKpL~~--n~ 177 (737)
T KOG1524|consen 139 --------------------------STVVQNEESIRCARWAP------NSNS------IVFC-QGGHISIKPLAA--NS 177 (737)
T ss_pred --------------------------HHHhhcCceeEEEEECC------CCCc------eEEe-cCCeEEEeeccc--cc
Confidence 12333567899999995 4444 4444 334566666655 33
Q ss_pred eEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe
Q 048511 162 WMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS 241 (351)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~ 241 (351)
.+...+ .|.+-|.++.|++....+++|+.|-..++||-.. ..+.....|+.+|++++|+|+ ..++.++
T Consensus 178 k~i~Wk-----AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G------~~Lf~S~~~ey~ITSva~npd-~~~~v~S 245 (737)
T KOG1524|consen 178 KIIRWR-----AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG------ANLFTSAAEEYAITSVAFNPE-KDYLLWS 245 (737)
T ss_pred ceeEEe-----ccCcEEEEeecCccccceeecCCceeEEeecccC------cccccCChhccceeeeeeccc-cceeeee
Confidence 333333 8999999999999999999999999999999877 457777889999999999999 6666666
Q ss_pred CCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511 242 HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE 304 (351)
Q Consensus 242 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~ 304 (351)
.+ ++|+=.. ..+.|..++|++ ||..++.|...|.+.+=-
T Consensus 246 ~n-t~R~~~p---------------------~~GSifnlsWS~--DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 246 YN-TARFSSP---------------------RVGSIFNLSWSA--DGTQATCGTSTGQLIVAY 284 (737)
T ss_pred ee-eeeecCC---------------------CccceEEEEEcC--CCceeeccccCceEEEee
Confidence 43 4442221 234589999999 999999999999876643
No 193
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=5.5e-16 Score=138.13 Aligned_cols=275 Identities=17% Similarity=0.170 Sum_probs=186.7
Q ss_pred CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511 4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV 83 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 83 (351)
.+..|.||...+ + .++..+.+|..+++.+.+. |.. +.-.++.+++.||+|++||...+..+....... ++
T Consensus 35 ~~~~V~VyS~~T-g--~~i~~l~~~~a~l~s~~~~----~~~-~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~--~v 104 (792)
T KOG1963|consen 35 TGNFVKVYSTAT-G--ECITSLEDHTAPLTSVIVL----PSS-ENANYLIVCSLDGTIRVWDWSDGELLKTFDNNL--PV 104 (792)
T ss_pred eCCEEEEEecch-H--hhhhhcccccCccceeeec----CCC-ccceEEEEEecCccEEEecCCCcEEEEEEecCC--ce
Confidence 467899999998 7 5667999999999999998 320 113688899999999999999887766555433 22
Q ss_pred eeeEeee----cCCeEEecCCceeE--------------EEEEe--------ccccccceEEEEecCCCCCCCCCcccCC
Q 048511 84 ISLASYI----EGPVLVAGSSSYQV--------------SVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQ 137 (351)
Q Consensus 84 ~~~~~~~----~~~~l~~~~~~~~~--------------~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~ 137 (351)
..+.+.+ ....+..+..+..+ ....+ +..|.. -.++.++ +.+++
T Consensus 105 ~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~------~~ge~--- 174 (792)
T KOG1963|consen 105 HALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDN------NSGEF--- 174 (792)
T ss_pred eEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEc------CCceE---
Confidence 2222211 11111122111111 00111 222222 3456666 45554
Q ss_pred CceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccc
Q 048511 138 PSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKV 217 (351)
Q Consensus 138 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 217 (351)
.... .+..+.+|+..+ .. ...........|...+++.+++|++++++++..||+|.+|.--..+... .....
T Consensus 175 ---~~i~-~~~~~~~~~v~~--~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~-~t~t~ 246 (792)
T KOG1963|consen 175 ---KGIV-HMCKIHIYFVPK--HT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS-ETCTL 246 (792)
T ss_pred ---EEEE-EeeeEEEEEecc--cc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc-ccceE
Confidence 4444 455688999887 33 2222222233566678999999999999999999999999654311111 23456
Q ss_pred cccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC
Q 048511 218 PSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE 297 (351)
Q Consensus 218 ~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d 297 (351)
+.-|...|++++|+++|.+|++|+..|.+.+|.+.+++. +.+. --+.+|..+.++| |+.+.+....|
T Consensus 247 lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k--------qfLP---RLgs~I~~i~vS~--ds~~~sl~~~D 313 (792)
T KOG1963|consen 247 LHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK--------QFLP---RLGSPILHIVVSP--DSDLYSLVLED 313 (792)
T ss_pred EEecccccceeEEecCCceEeecccceEEEEEeecCCCc--------cccc---ccCCeeEEEEEcC--CCCeEEEEecC
Confidence 677999999999999999999999999999999988862 1222 2356799999999 99999999999
Q ss_pred CeEEEEecC-chhhhceeecccc
Q 048511 298 KVARVFEAP-LSFLKTLNHATFQ 319 (351)
Q Consensus 298 g~v~vw~~~-~~~~~~~~~~~~~ 319 (351)
..|.+-... -....++++....
T Consensus 314 NqI~li~~~dl~~k~tIsgi~~~ 336 (792)
T KOG1963|consen 314 NQIHLIKASDLEIKSTISGIKPP 336 (792)
T ss_pred ceEEEEeccchhhhhhccCccCC
Confidence 999999875 5566666666544
No 194
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.74 E-value=4.2e-18 Score=150.48 Aligned_cols=211 Identities=17% Similarity=0.221 Sum_probs=154.8
Q ss_pred EEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCc
Q 048511 22 ACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSS 101 (351)
Q Consensus 22 ~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 101 (351)
+..+.+|..+|+|+.|. ..|.+++||+.|..++||..++..++
T Consensus 183 ikrLlgH~naVyca~fD--------rtg~~Iitgsdd~lvKiwS~et~~~l----------------------------- 225 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFD--------RTGRYIITGSDDRLVKIWSMETARCL----------------------------- 225 (1113)
T ss_pred HHHHHhhhhheeeeeec--------cccceEeecCccceeeeeeccchhhh-----------------------------
Confidence 34567899999999999 88999999999999999998877655
Q ss_pred eeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEE
Q 048511 102 YQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGG 181 (351)
Q Consensus 102 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i 181 (351)
....||.+.|+.++.+ .+..+ +++++.|..|++|.+.. +..+..+. +|++.|+++
T Consensus 226 ------As~rGhs~ditdlavs------~~n~~------iaaaS~D~vIrvWrl~~--~~pvsvLr-----ghtgavtai 280 (1113)
T KOG0644|consen 226 ------ASCRGHSGDITDLAVS------SNNTM------IAAASNDKVIRVWRLPD--GAPVSVLR-----GHTGAVTAI 280 (1113)
T ss_pred ------ccCCCCccccchhccc------hhhhh------hhhcccCceEEEEecCC--CchHHHHh-----ccccceeee
Confidence 3467899999999999 66777 99999999999999999 77776666 999999999
Q ss_pred EEcCCCCEEEEEeeCCeEEEEEccc-CcccCcccccccccccccEEEEEeecCCCEEEEEeCC-----------------
Q 048511 182 HWSPDGRSILAHGYGGAFHLWRNVG-VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD----------------- 243 (351)
Q Consensus 182 ~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d----------------- 243 (351)
+|+|-. +.+.||++++||.+- .......+.. +. ....+.++.|...+.-++|++.|
T Consensus 281 afsP~~----sss~dgt~~~wd~r~~~~~y~prp~~-~~-~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~ 354 (1113)
T KOG0644|consen 281 AFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLK-FT-EKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNL 354 (1113)
T ss_pred ccCccc----cCCCCCceEeccccccccccCCCCCC-cc-cccceeeeeccccccccccccCCcccccchhhHhhhhccc
Confidence 999954 778899999999872 1110000000 00 11223333333333333333333
Q ss_pred --------------------CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEE
Q 048511 244 --------------------QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVF 303 (351)
Q Consensus 244 --------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw 303 (351)
-.+++|++.++. ......+|...+..+.++| .+.....+++.||...||
T Consensus 355 lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~----------l~H~l~ghsd~~yvLd~Hp-fn~ri~msag~dgst~iw 423 (1113)
T KOG0644|consen 355 LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ----------LLHNLMGHSDEVYVLDVHP-FNPRIAMSAGYDGSTIIW 423 (1113)
T ss_pred eEEEeccccccccceeeeeeeEeeeeecccch----------hhhhhcccccceeeeeecC-CCcHhhhhccCCCceEee
Confidence 345555555444 4555667888899999999 567777899999999999
Q ss_pred ecC-chhhh
Q 048511 304 EAP-LSFLK 311 (351)
Q Consensus 304 ~~~-~~~~~ 311 (351)
|+- |..++
T Consensus 424 di~eg~pik 432 (1113)
T KOG0644|consen 424 DIWEGIPIK 432 (1113)
T ss_pred ecccCCcce
Confidence 975 54444
No 195
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.74 E-value=1e-16 Score=123.81 Aligned_cols=219 Identities=17% Similarity=0.204 Sum_probs=153.4
Q ss_pred CCCCCceEEEEEccCCCceEEEEeee-ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceee---
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELK-GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQ--- 76 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~--- 76 (351)
+|..-|.|++|.+.+ .+ .+..++ .|...|+.+.-. ++ +.|.|-+.|..+.+|++..........
T Consensus 30 sg~~~G~V~~w~lqt-~r--~~~~~r~~g~~~it~lq~~--------p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~ 97 (323)
T KOG0322|consen 30 SGLSVGIVKMWVLQT-ER--DLPLIRLFGRLFITNLQSI--------PN-DSLDTQGRDPLLILWTIAYSAFISIHSIVV 97 (323)
T ss_pred cccccceEEEEEeec-Cc--cchhhhhhccceeeceeec--------CC-cchhhcCCCceEEEEEccCcceEEEeeeec
Confidence 467889999999998 42 344556 567889999988 54 688899999999999986522110000
Q ss_pred -----------ccc--------------------------------------ccceeeeEeee-cCC--eEEecCCceeE
Q 048511 77 -----------STY--------------------------------------RKEVISLASYI-EGP--VLVAGSSSYQV 104 (351)
Q Consensus 77 -----------~~~--------------------------------------~~~~~~~~~~~-~~~--~l~~~~~~~~~ 104 (351)
... ...+.+..+.. .+. ++++|-+.+.+
T Consensus 98 nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghv 177 (323)
T KOG0322|consen 98 NSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHV 177 (323)
T ss_pred cccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeE
Confidence 000 00111111111 111 34445556655
Q ss_pred EEEEe------------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEE
Q 048511 105 SVESL------------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVV 166 (351)
Q Consensus 105 ~~~~~------------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 166 (351)
..|.. ...|..+|.++.|.+ .-.. =++|+.+..+..|.+....+......
T Consensus 178 v~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas------~~~r------Gisgga~dkl~~~Sl~~s~gslq~~~ 245 (323)
T KOG0322|consen 178 VIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS------SCDR------GISGGADDKLVMYSLNHSTGSLQIRK 245 (323)
T ss_pred EEEEccCCceeeccccccccccchhhccCcceeeeech------hhcC------CcCCCccccceeeeeccccCcccccc
Confidence 44432 345888999999984 3333 56778888899999886433322211
Q ss_pred EeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcE
Q 048511 167 TVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTT 246 (351)
Q Consensus 167 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i 246 (351)
. ..-....+..+..-||++.+|+++.|++||+|..++. .++..+.-|...|++++|+|+..++|.+++|++|
T Consensus 246 e---~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl-----~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rI 317 (323)
T KOG0322|consen 246 E---ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL-----NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARI 317 (323)
T ss_pred e---EEecCCCccceEEccCCcEEeecccCCcEEEEEeccC-----CchhhhhhhhcceeEEEeCCCCchhhhccCCceE
Confidence 1 1122345778899999999999999999999999997 7899999999999999999999999999999999
Q ss_pred EEEcC
Q 048511 247 RVFAP 251 (351)
Q Consensus 247 ~vwd~ 251 (351)
.+|++
T Consensus 318 SLWkL 322 (323)
T KOG0322|consen 318 SLWKL 322 (323)
T ss_pred Eeeec
Confidence 99986
No 196
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=4.1e-16 Score=123.75 Aligned_cols=222 Identities=14% Similarity=0.237 Sum_probs=169.3
Q ss_pred cCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEE
Q 048511 28 HTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVE 107 (351)
Q Consensus 28 h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 107 (351)
-..+|+|.+|+ ++...+|.+.....|.||.....+.- ...
T Consensus 9 ~~~pitchAwn--------~drt~iAv~~~~~evhiy~~~~~~~w--------------------------------~~~ 48 (361)
T KOG1523|consen 9 LLEPITCHAWN--------SDRTQIAVSPNNHEVHIYSMLGADLW--------------------------------EPA 48 (361)
T ss_pred ccCceeeeeec--------CCCceEEeccCCceEEEEEecCCCCc--------------------------------eec
Confidence 45799999999 88999999999999999998765422 233
Q ss_pred EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCC
Q 048511 108 SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG 187 (351)
Q Consensus 108 ~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 187 (351)
+++..|...|+++.|. +..+. |++++.|..-++|....+ +.+..++.+. .++...+++.|+|.+
T Consensus 49 htls~Hd~~vtgvdWa------p~snr------Ivtcs~drnayVw~~~~~-~~WkptlvLl---RiNrAAt~V~WsP~e 112 (361)
T KOG1523|consen 49 HTLSEHDKIVTGVDWA------PKSNR------IVTCSHDRNAYVWTQPSG-GTWKPTLVLL---RINRAATCVKWSPKE 112 (361)
T ss_pred eehhhhCcceeEEeec------CCCCc------eeEccCCCCccccccCCC-CeeccceeEE---EeccceeeEeecCcC
Confidence 5678899999999999 56666 999999999999998432 6666665532 566779999999999
Q ss_pred CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccccc-Cccce--
Q 048511 188 RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM-GENSW-- 264 (351)
Q Consensus 188 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~-- 264 (351)
+.+++|+....|.||-++... ..|.....-+.+.+.|++++|+|++-+|++|+.|+..|||..--....+. ....|
T Consensus 113 nkFAVgSgar~isVcy~E~EN-dWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgs 191 (361)
T KOG1523|consen 113 NKFAVGSGARLISVCYYEQEN-DWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGS 191 (361)
T ss_pred ceEEeccCccEEEEEEEeccc-ceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCcc
Confidence 999999999999999876532 22333344456788999999999999999999999999997522111110 00111
Q ss_pred -----EEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCch
Q 048511 265 -----HEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLS 308 (351)
Q Consensus 265 -----~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 308 (351)
..+......++.+..+.|+| .|..|+-.+.|..+.+=|..+.
T Consensus 192 k~PFG~lm~E~~~~ggwvh~v~fs~--sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 192 KMPFGQLMSEASSSGGWVHGVLFSP--SGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred CCcHHHHHHhhccCCCceeeeEeCC--CCCEeeEecCCCceEEeecCCC
Confidence 12222324456799999999 8999999999999999997643
No 197
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=3.5e-16 Score=124.15 Aligned_cols=228 Identities=16% Similarity=0.175 Sum_probs=166.5
Q ss_pred CCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCC-cccceeeccccc
Q 048511 3 GLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALR-GSSANTQSTYRK 81 (351)
Q Consensus 3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~-~~~~~~~~~~~~ 81 (351)
-....|.||.....+.++..++++.|...|++|+|+ +..+.|+||+.|..-.+|....+ .....
T Consensus 29 ~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWa--------p~snrIvtcs~drnayVw~~~~~~~Wkpt------- 93 (361)
T KOG1523|consen 29 PNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWA--------PKSNRIVTCSHDRNAYVWTQPSGGTWKPT------- 93 (361)
T ss_pred cCCceEEEEEecCCCCceeceehhhhCcceeEEeec--------CCCCceeEccCCCCccccccCCCCeeccc-------
Confidence 345689999988834489999999999999999999 88999999999999999998433 22221
Q ss_pred ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcc
Q 048511 82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGI 161 (351)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 161 (351)
-.+..++..++++.|+ |..+. ||+|+....|.||-++..+.-
T Consensus 94 --------------------------lvLlRiNrAAt~V~Ws------P~enk------FAVgSgar~isVcy~E~ENdW 135 (361)
T KOG1523|consen 94 --------------------------LVLLRINRAATCVKWS------PKENK------FAVGSGARLISVCYYEQENDW 135 (361)
T ss_pred --------------------------eeEEEeccceeeEeec------CcCce------EEeccCccEEEEEEEecccce
Confidence 1245578899999999 67778 999999999999999874333
Q ss_pred eEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc-------------CcccccccccccccEEEE
Q 048511 162 WMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID-------------NWQPQKVPSGHFAAVMDI 228 (351)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-------------~~~~~~~~~~~~~~v~~v 228 (351)
++.... -..+...|.+++|+|++-.|++|+.|+..++|..--.... ..++..++....+.|..+
T Consensus 136 WVsKhi---kkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v 212 (361)
T KOG1523|consen 136 WVSKHI---KKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGV 212 (361)
T ss_pred ehhhhh---CCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeee
Confidence 332211 1245667999999999999999999999999976321110 012223343456789999
Q ss_pred EeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCC
Q 048511 229 SWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEK 298 (351)
Q Consensus 229 ~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg 298 (351)
.|+|+|..|+-.+.|..+.+-|...... .+.......-+..++.|.. ...++.++.|.
T Consensus 213 ~fs~sG~~lawv~Hds~v~~~da~~p~~---------~v~~~~~~~lP~ls~~~is---e~~vv~ag~~c 270 (361)
T KOG1523|consen 213 LFSPSGNRLAWVGHDSTVSFVDAAGPSE---------RVQSVATAQLPLLSVSWIS---ENSVVAAGYDC 270 (361)
T ss_pred EeCCCCCEeeEecCCCceEEeecCCCch---------hccchhhccCCceeeEeec---CCceeecCCCC
Confidence 9999999999999999999999876641 1222222224566777765 33455555553
No 198
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.8e-16 Score=129.10 Aligned_cols=279 Identities=14% Similarity=0.089 Sum_probs=195.4
Q ss_pred CCCCCceEEEEEccCC---CceEEEEee-eecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceee
Q 048511 1 MGGLDNKIHLYRGQRT---GKFVRACEL-KGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQ 76 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~---~~~~~~~~~-~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~ 76 (351)
+|+.|-.+++|+++.. ...+++... ..|...|.|++|. ....+|++|+.+++|...|+++.+.+....
T Consensus 73 SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~--------~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~ 144 (609)
T KOG4227|consen 73 SGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFD--------LENRFLYSGERWGTVIKHDIETKQSIYVAN 144 (609)
T ss_pred ecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEc--------cCCeeEecCCCcceeEeeecccceeeeeec
Confidence 5889999999998750 111223222 2466899999999 778899999999999999999887654443
Q ss_pred cc-cccceeeeEeeecCCeEEecCCceeEEEEEeccc--c---------ccceEEEEecCCCCCCCCCcccCCCceeEEe
Q 048511 77 ST-YRKEVISLASYIEGPVLVAGSSSYQVSVESLLIG--H---------EDWVYSVQWEPPSTAPSDGVSCQQPSSILSA 144 (351)
Q Consensus 77 ~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--h---------~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~ 144 (351)
.. ....+..+..+|..+.+++...++.+.+|..-.. | .....++.|+| ....+ |++.
T Consensus 145 ~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P-----~~P~L------i~~~ 213 (609)
T KOG4227|consen 145 ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP-----ETPAL------ILVN 213 (609)
T ss_pred ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC-----CCcee------EEec
Confidence 22 2457888999999999999998888887765322 2 23345667776 34445 9999
Q ss_pred ecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc----
Q 048511 145 SMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG---- 220 (351)
Q Consensus 145 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~---- 220 (351)
+..+-+-+||.+.......+.--...++......+++.|+|+|+.+++--....-.+||+.... .++.++..
T Consensus 214 ~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R----~~V~k~D~N~~G 289 (609)
T KOG4227|consen 214 SETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR----CFVLKSDHNPNG 289 (609)
T ss_pred cccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc----ceeEeccCCCCc
Confidence 9999999999987432222111111122223345788999999999988777778889987754 22333331
Q ss_pred --ccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccccc-------------CccceEEeccccccccceeEEEEeee
Q 048511 221 --HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM-------------GENSWHEVARPQVHGHDINCVTIIQG 285 (351)
Q Consensus 221 --~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~-------------~~~~~~~~~~~~~~~~~i~~~~~~~~ 285 (351)
....+.+++|..+- .+++|+.+-.|++|.+........ ....-..+..+++|..-++.+.|+|
T Consensus 290 Y~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~- 367 (609)
T KOG4227|consen 290 YCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ- 367 (609)
T ss_pred ceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecC-
Confidence 12346778887664 499999999999999864332211 0011123455778999999999999
Q ss_pred CCCcEEEEecCCCeEEEEec
Q 048511 286 KGNHRFVSGADEKVARVFEA 305 (351)
Q Consensus 286 ~~~~~l~s~~~dg~v~vw~~ 305 (351)
...+|++.+-...++||..
T Consensus 368 -H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 368 -HNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred -CcceEeccchhhheecccc
Confidence 7889999999999999973
No 199
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.73 E-value=7.1e-16 Score=141.86 Aligned_cols=265 Identities=13% Similarity=0.116 Sum_probs=175.4
Q ss_pred EEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccc------ceeeccccccee
Q 048511 11 YRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSS------ANTQSTYRKEVI 84 (351)
Q Consensus 11 w~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~~ 84 (351)
|+++. ..+..+..|...|..++.+ + +.+.+|+|||.||+|++|+...-... .......+..+.
T Consensus 1034 W~p~G----~lVAhL~Ehs~~v~k~a~s----~---~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~ 1102 (1431)
T KOG1240|consen 1034 WNPRG----ILVAHLHEHSSAVIKLAVS----S---EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVE 1102 (1431)
T ss_pred CCccc----eEeehhhhccccccceeec----C---CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceE
Confidence 56654 6788999999999999998 2 45589999999999999998753221 111222356677
Q ss_pred eeEeeecCCeEEecCCceeEEEEEecc---------------cc-ccceEEE-EecCCCCCCCCCcccCCCceeEEeecC
Q 048511 85 SLASYIEGPVLVAGSSSYQVSVESLLI---------------GH-EDWVYSV-QWEPPSTAPSDGVSCQQPSSILSASMD 147 (351)
Q Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~~~~~~---------------~h-~~~v~~l-~~~p~~~~~~~~~~~~~~~~l~s~~~d 147 (351)
.+.....+..++++..+|.+.+.+.-. .+ .+.+.++ +|.- .... ..++.+..-
T Consensus 1103 ~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~-----~~~S-----~~lvy~T~~ 1172 (1431)
T KOG1240|consen 1103 KVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTA-----IVQS-----HVLVYATDL 1172 (1431)
T ss_pred EEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccc-----cccc-----eeEEEEEec
Confidence 888899999999999999886654311 11 1222222 2221 1222 238888889
Q ss_pred CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc-cccccEE
Q 048511 148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS-GHFAAVM 226 (351)
Q Consensus 148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-~~~~~v~ 226 (351)
+.|..||++.....+..... ...+.|++++.+|.++++++|+..|.+.+||++-+ .++.... .+..+|+
T Consensus 1173 ~~iv~~D~r~~~~~w~lk~~-----~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~-----~~i~sw~~P~~~~i~ 1242 (1431)
T KOG1240|consen 1173 SRIVSWDTRMRHDAWRLKNQ-----LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR-----VPILSWEHPARAPIR 1242 (1431)
T ss_pred cceEEecchhhhhHHhhhcC-----ccccceeEEEecCCceEEEEecCCceEEEEEeecC-----ceeecccCcccCCcc
Confidence 99999999984333333322 34567999999999999999999999999999886 3344332 3456788
Q ss_pred EEEeecCC---CEEEEE-e-CCCcEEEEcCCCccccccCccceEE--ecc-----cc-----ccccceeEEEEeeeCCCc
Q 048511 227 DISWSRSS---DYLLSV-S-HDQTTRVFAPWKNVASLMGENSWHE--VAR-----PQ-----VHGHDINCVTIIQGKGNH 289 (351)
Q Consensus 227 ~v~~sp~~---~~l~s~-~-~dg~i~vwd~~~~~~~~~~~~~~~~--~~~-----~~-----~~~~~i~~~~~~~~~~~~ 289 (351)
.+..+|-. ...+++ + ..+.|.+|++.++.+... .|.. ... +. .+.-......+.. .+.
T Consensus 1243 ~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~v---l~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~--~~~ 1317 (1431)
T KOG1240|consen 1243 HVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTV---LWASDGAPILSYALPSNDARKPDSLAGISCGVCE--KNG 1317 (1431)
T ss_pred eEEeeccCCCCceEEEecccCCCceeeeecccCcceEE---EEcCCCCcchhhhcccccCCCCCcccceeeeccc--CCc
Confidence 88877733 344444 3 578899999998864321 1111 000 00 1111122233333 577
Q ss_pred EEEEecCCCeEEEEecCchhhh
Q 048511 290 RFVSGADEKVARVFEAPLSFLK 311 (351)
Q Consensus 290 ~l~s~~~dg~v~vw~~~~~~~~ 311 (351)
.+.+|+.|..||.||.......
T Consensus 1318 ~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1318 FLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred eeeecCCccceeeccCCCcccc
Confidence 8999999999999997643333
No 200
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.72 E-value=1.6e-16 Score=127.16 Aligned_cols=215 Identities=15% Similarity=0.165 Sum_probs=161.9
Q ss_pred CceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEec-CCCcccceeecccccceeeeEeeecCCeE
Q 048511 17 GKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKL-ALRGSSANTQSTYRKEVISLASYIEGPVL 95 (351)
Q Consensus 17 ~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 95 (351)
.++..+..++||.+.|+....- +..+-+++.+.|.++|||-- +.++....+....+....++.+.++...|
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~--------~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L 83 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILI--------PKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRL 83 (404)
T ss_pred cchhhhhhhcCchhhhhhheec--------cCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEE
Confidence 3445677889999999998888 66778999999999999954 44555556666667889999999999999
Q ss_pred EecCCceeEEE------------EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCC----
Q 048511 96 VAGSSSYQVSV------------ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTT---- 159 (351)
Q Consensus 96 ~~~~~~~~~~~------------~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---- 159 (351)
.++-..+.+.. .+....|...|..+-|+ ..... +++.+.|..+.---.+.+.
T Consensus 84 ~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~------~~~e~------V~s~~~dk~~~~hc~e~~~~lg~ 151 (404)
T KOG1409|consen 84 YVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFS------LTHEW------VLSTGKDKQFAWHCTESGNRLGG 151 (404)
T ss_pred EEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEec------CCcee------EEEeccccceEEEeeccCCcccc
Confidence 99988887743 33456788889888888 45556 7777776654322222100
Q ss_pred -----------------------cc--eEEEE-----EeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcc
Q 048511 160 -----------------------GI--WMNVV-----TVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDI 209 (351)
Q Consensus 160 -----------------------~~--~~~~~-----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 209 (351)
++ ..+.. .+....+|...+++++|.+....|++|..|..+.+||+-..+
T Consensus 152 Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~- 230 (404)
T KOG1409|consen 152 YNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK- 230 (404)
T ss_pred eEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc-
Confidence 00 00000 011234788899999999999999999999999999997654
Q ss_pred cCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511 210 DNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
.....+.+|...|..++..+--+.+++++.||.|.+|+++...
T Consensus 231 ---g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 231 ---GTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred ---ceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 3466788899999999998888899999999999999997654
No 201
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.72 E-value=2.4e-14 Score=115.91 Aligned_cols=229 Identities=11% Similarity=0.088 Sum_probs=152.3
Q ss_pred eEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeee
Q 048511 7 KIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISL 86 (351)
Q Consensus 7 ~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 86 (351)
.+++.+... +...+-..+ ..+|.+|.++ .++|+.+=.+ .|.|||+++.+.+..+...
T Consensus 69 ~Lkv~~~Kk-~~~ICe~~f---pt~IL~VrmN----------r~RLvV~Lee-~IyIydI~~MklLhTI~t~-------- 125 (391)
T KOG2110|consen 69 KLKVVHFKK-KTTICEIFF---PTSILAVRMN----------RKRLVVCLEE-SIYIYDIKDMKLLHTIETT-------- 125 (391)
T ss_pred eEEEEEccc-CceEEEEec---CCceEEEEEc----------cceEEEEEcc-cEEEEecccceeehhhhcc--------
Confidence 466666665 322222222 4578899988 4566666654 4999999988776555421
Q ss_pred EeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEee--cCCeEEEEeccCCCcceEE
Q 048511 87 ASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS--MDKTMMIWQPEKTTGIWMN 164 (351)
Q Consensus 87 ~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~ 164 (351)
..+...+..+.++ ..+.+ ++.-+ ..|.|.+||+.+ -+.+.
T Consensus 126 ------------------------~~n~~gl~AlS~n------~~n~y------lAyp~s~t~GdV~l~d~~n--l~~v~ 167 (391)
T KOG2110|consen 126 ------------------------PPNPKGLCALSPN------NANCY------LAYPGSTTSGDVVLFDTIN--LQPVN 167 (391)
T ss_pred ------------------------CCCccceEeeccC------CCCce------EEecCCCCCceEEEEEccc--ceeee
Confidence 2244455555555 34445 55432 368899999998 66666
Q ss_pred EEEeccccccccceEEEEEcCCCCEEEEEeeCCe-EEEEEcccCcccCcccccccccc--cccEEEEEeecCCCEEEEEe
Q 048511 165 VVTVGELSHSALGFYGGHWSPDGRSILAHGYGGA-FHLWRNVGVDIDNWQPQKVPSGH--FAAVMDISWSRSSDYLLSVS 241 (351)
Q Consensus 165 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~~~~l~s~~ 241 (351)
.+. .|.+.+-+++|+++|.+||+++..|+ ||||.+.++ +.++++... ...|.+++|+|++++|++.+
T Consensus 168 ~I~-----aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G-----~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS 237 (391)
T KOG2110|consen 168 TIN-----AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG-----QKLYEFRRGTYPVSIYSLSFSPDSQFLAASS 237 (391)
T ss_pred EEE-----ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc-----cEeeeeeCCceeeEEEEEEECCCCCeEEEec
Confidence 666 89999999999999999999999886 789999887 445555532 34688999999999999999
Q ss_pred CCCcEEEEcCCCccccccC-ccc-----------------------eE---Eeccccccccce-eEEEEeeeCCCcEEEE
Q 048511 242 HDQTTRVFAPWKNVASLMG-ENS-----------------------WH---EVARPQVHGHDI-NCVTIIQGKGNHRFVS 293 (351)
Q Consensus 242 ~dg~i~vwd~~~~~~~~~~-~~~-----------------------~~---~~~~~~~~~~~i-~~~~~~~~~~~~~l~s 293 (351)
..++|.||.+......... ... |. .+...+...... ..+.+.+......+..
T Consensus 238 ~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~v 317 (391)
T KOG2110|consen 238 NTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLV 317 (391)
T ss_pred CCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEE
Confidence 9999999998765422110 000 00 000001111111 2233332236788999
Q ss_pred ecCCCeEEEEecC
Q 048511 294 GADEKVARVFEAP 306 (351)
Q Consensus 294 ~~~dg~v~vw~~~ 306 (351)
++.||.+..|.++
T Consensus 318 as~dG~~y~y~l~ 330 (391)
T KOG2110|consen 318 ASYDGHLYSYRLP 330 (391)
T ss_pred EEcCCeEEEEEcC
Confidence 9999999999976
No 202
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=9.7e-17 Score=131.73 Aligned_cols=195 Identities=19% Similarity=0.233 Sum_probs=136.5
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
||+.||++|||++.. - ..+.....|.+.|.+|.|+ +++++|++-+.| ..+||+.+++..+.....
T Consensus 161 tgg~dg~lRv~~~Ps-~--~t~l~e~~~~~eV~DL~FS--------~dgk~lasig~d-~~~VW~~~~g~~~a~~t~--- 225 (398)
T KOG0771|consen 161 TGGTDGTLRVWEWPS-M--LTILEEIAHHAEVKDLDFS--------PDGKFLASIGAD-SARVWSVNTGAALARKTP--- 225 (398)
T ss_pred eccccceEEEEecCc-c--hhhhhhHhhcCccccceeC--------CCCcEEEEecCC-ceEEEEeccCchhhhcCC---
Confidence 588999999999655 2 4556778899999999999 899999999999 899999999855443321
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG 160 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 160 (351)
.........+.|+ .++.. ..-.+++....-+.|+.||+..-.+
T Consensus 226 ------------------------------~~k~~~~~~cRF~------~d~~~-~~l~laa~~~~~~~v~~~~~~~w~~ 268 (398)
T KOG0771|consen 226 ------------------------------FSKDEMFSSCRFS------VDNAQ-ETLRLAASQFPGGGVRLCDISLWSG 268 (398)
T ss_pred ------------------------------cccchhhhhceec------ccCCC-ceEEEEEecCCCCceeEEEeeeecc
Confidence 1112233445555 33310 0000133333445677776654222
Q ss_pred ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE
Q 048511 161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV 240 (351)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~ 240 (351)
. ..++..........|.+++.+++|++++.|+.||.|.|++...-+ .....-+.|...|+.+.|+|+.+++++.
T Consensus 269 ~--~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq----~~~~vk~aH~~~VT~ltF~Pdsr~~~sv 342 (398)
T KOG0771|consen 269 S--NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQ----RLQYVKEAHLGFVTGLTFSPDSRYLASV 342 (398)
T ss_pred c--cccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceee----eeEeehhhheeeeeeEEEcCCcCccccc
Confidence 1 111111111233479999999999999999999999999997753 2334456799999999999999999999
Q ss_pred eCCCcEEEEcCCC
Q 048511 241 SHDQTTRVFAPWK 253 (351)
Q Consensus 241 ~~dg~i~vwd~~~ 253 (351)
+.|..+.|..+.-
T Consensus 343 Ss~~~~~v~~l~v 355 (398)
T KOG0771|consen 343 SSDNEAAVTKLAV 355 (398)
T ss_pred ccCCceeEEEEee
Confidence 9999999987754
No 203
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1.1e-15 Score=135.83 Aligned_cols=227 Identities=15% Similarity=0.110 Sum_probs=150.3
Q ss_pred CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCC---CcEEEEecCCCcccceeecccc
Q 048511 4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQD---KVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~~~~ 80 (351)
.+..|.+||.+. .. ...+..|...+.+..|+ |+|+.|+.++.+ ..|.+||+.++....
T Consensus 182 ~~~~i~i~d~dg-~~---~~~lt~~~~~v~~p~wS--------PDG~~la~~s~~~~~~~i~i~dl~tg~~~~------- 242 (429)
T PRK01742 182 QPYEVRVADYDG-FN---QFIVNRSSQPLMSPAWS--------PDGSKLAYVSFENKKSQLVVHDLRSGARKV------- 242 (429)
T ss_pred ceEEEEEECCCC-CC---ceEeccCCCccccceEc--------CCCCEEEEEEecCCCcEEEEEeCCCCceEE-------
Confidence 467899999876 32 24566788899999999 889999988754 369999997654221
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEee-cCCeEEEEeccCCC
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS-MDKTMMIWQPEKTT 159 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~ 159 (351)
+..+.+| ...++|+ ||++. |+.++ .+|.+.||.+....
T Consensus 243 --------------------------l~~~~g~---~~~~~wS------PDG~~------La~~~~~~g~~~Iy~~d~~~ 281 (429)
T PRK01742 243 --------------------------VASFRGH---NGAPAFS------PDGSR------LAFASSKDGVLNIYVMGANG 281 (429)
T ss_pred --------------------------EecCCCc---cCceeEC------CCCCE------EEEEEecCCcEEEEEEECCC
Confidence 1112333 2357999 78887 77654 68876666443211
Q ss_pred cceEEEEEeccccccccceEEEEEcCCCCEEEEEe-eCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEE
Q 048511 160 GIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLL 238 (351)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~ 238 (351)
+.. ..+. .+...+....|+|+|+.|+..+ .++...||++..... ....+ .+.. ....|+|+|++|+
T Consensus 282 ~~~-~~lt-----~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~----~~~~l-~~~~--~~~~~SpDG~~ia 348 (429)
T PRK01742 282 GTP-SQLT-----SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG----GASLV-GGRG--YSAQISADGKTLV 348 (429)
T ss_pred CCe-Eeec-----cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC----CeEEe-cCCC--CCccCCCCCCEEE
Confidence 332 2222 3445577899999999776555 578888888754321 11222 2333 4578999999998
Q ss_pred EEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe---cCchhhhceee
Q 048511 239 SVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE---APLSFLKTLNH 315 (351)
Q Consensus 239 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~---~~~~~~~~~~~ 315 (351)
..+.++ +.+||+.++.. ..+.. .. ....++|+| ++++|+.++.++.+.+|. ..+..++.+..
T Consensus 349 ~~~~~~-i~~~Dl~~g~~--------~~lt~--~~--~~~~~~~sP--dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~ 413 (429)
T PRK01742 349 MINGDN-VVKQDLTSGST--------EVLSS--TF--LDESPSISP--NGIMIIYSSTQGLGKVLQLVSADGRFKARLPG 413 (429)
T ss_pred EEcCCC-EEEEECCCCCe--------EEecC--CC--CCCCceECC--CCCEEEEEEcCCCceEEEEEECCCCceEEccC
Confidence 887764 66699877752 11111 11 235678999 999999999888777776 45777777765
Q ss_pred ccc
Q 048511 316 ATF 318 (351)
Q Consensus 316 ~~~ 318 (351)
+.+
T Consensus 414 ~~g 416 (429)
T PRK01742 414 SDG 416 (429)
T ss_pred CCC
Confidence 543
No 204
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.71 E-value=2e-16 Score=133.71 Aligned_cols=222 Identities=15% Similarity=0.222 Sum_probs=151.8
Q ss_pred ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc--cceee-----eEeeecCCeEEecC
Q 048511 27 GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR--KEVIS-----LASYIEGPVLVAGS 99 (351)
Q Consensus 27 ~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~l~~~~ 99 (351)
.|...|.|+.|. .+...+.+++.+..++-|++.+.. ......+.. ..... ..-......+++++
T Consensus 12 r~~e~vc~v~w~--------~~eei~~~~dDh~~~~~~~~~~~s-~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s 82 (737)
T KOG1524|consen 12 RNSEKVCCVDWS--------SNEEIYFVSDDHQIFKWSDVSRDS-VEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICS 82 (737)
T ss_pred ccceeEEeeccc--------ccceEEEeccCceEEEeecccchh-hhhhhCCcccCCccccccccccCCCCCcceEEEEc
Confidence 467778899998 666666666544444444554332 221111110 01111 01111234666777
Q ss_pred CceeEEEEE-------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccc
Q 048511 100 SSYQVSVES-------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELS 172 (351)
Q Consensus 100 ~~~~~~~~~-------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 172 (351)
.++.+.++. ....|.+.+.+-.|+ +||.- |++++.||.|++|.-. |....++.
T Consensus 83 ~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~------~dGtg------Llt~GEDG~iKiWSrs---GMLRStl~----- 142 (737)
T KOG1524|consen 83 NDGRFVILNKSARVERSISAHAAAISSGRWS------PDGAG------LLTAGEDGVIKIWSRS---GMLRSTVV----- 142 (737)
T ss_pred CCceEEEecccchhhhhhhhhhhhhhhcccC------CCCce------eeeecCCceEEEEecc---chHHHHHh-----
Confidence 777665443 467899999999999 78888 9999999999999855 43333332
Q ss_pred ccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCC
Q 048511 173 HSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPW 252 (351)
Q Consensus 173 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~ 252 (351)
....+|+|++|.|+.+.++-+. .+.+.+=-+..+ ..+...++|.+-|.++.|++..+++++|++|-..+|||-.
T Consensus 143 Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n-----~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~ 216 (737)
T KOG1524|consen 143 QNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAAN-----SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ 216 (737)
T ss_pred hcCceeEEEEECCCCCceEEec-CCeEEEeecccc-----cceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc
Confidence 4566899999999887665543 344555545443 2356778999999999999999999999999999999975
Q ss_pred CccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC
Q 048511 253 KNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE 297 (351)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d 297 (351)
.. .+.....|.++|++++|.| + ..++.+|..
T Consensus 217 G~-----------~Lf~S~~~ey~ITSva~np--d-~~~~v~S~n 247 (737)
T KOG1524|consen 217 GA-----------NLFTSAAEEYAITSVAFNP--E-KDYLLWSYN 247 (737)
T ss_pred Cc-----------ccccCChhccceeeeeecc--c-cceeeeeee
Confidence 44 4556668999999999999 5 666666643
No 205
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=8.8e-17 Score=136.17 Aligned_cols=181 Identities=18% Similarity=0.278 Sum_probs=140.0
Q ss_pred EEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC
Q 048511 106 VESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP 185 (351)
Q Consensus 106 ~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~ 185 (351)
..+.+.||++-|+|+.|+ .+|.+ |++||.|-.+.|||.-. .+.+..+. .+|...|.++.|-|
T Consensus 42 lE~eL~GH~GCVN~LeWn------~dG~l------L~SGSDD~r~ivWd~~~--~KllhsI~----TgHtaNIFsvKFvP 103 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWN------ADGEL------LASGSDDTRLIVWDPFE--YKLLHSIS----TGHTANIFSVKFVP 103 (758)
T ss_pred hhhhhccccceecceeec------CCCCE------EeecCCcceEEeecchh--cceeeeee----cccccceeEEeeec
Confidence 446689999999999999 89999 99999999999999987 66666665 48999999999998
Q ss_pred --CCCEEEEEeeCCeEEEEEcccCccc-----CcccccccccccccEEEEEeecCC-CEEEEEeCCCcEEEEcCCCcccc
Q 048511 186 --DGRSILAHGYGGAFHLWRNVGVDID-----NWQPQKVPSGHFAAVMDISWSRSS-DYLLSVSHDQTTRVFAPWKNVAS 257 (351)
Q Consensus 186 --~~~~l~~~~~dg~i~~~d~~~~~~~-----~~~~~~~~~~~~~~v~~v~~sp~~-~~l~s~~~dg~i~vwd~~~~~~~ 257 (351)
+.+.+++|+.|..|++||+...+.. .......+..|...|..++-.|++ +.+.++++||+|+-+|++.....
T Consensus 104 ~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c 183 (758)
T KOG1310|consen 104 YTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC 183 (758)
T ss_pred cCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC
Confidence 4578999999999999999752211 123455667789999999999988 77899999999999999885422
Q ss_pred ccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511 258 LMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA 305 (351)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~ 305 (351)
.........+..+...--...|+.++| .+..+|+.|+.|-.+++||.
T Consensus 184 ~p~~~~~~~l~ny~~~lielk~ltisp-~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 184 NPDEDCPSILVNYNPQLIELKCLTISP-SRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred CccccccHHHHHhchhhheeeeeeecC-CCCceEEecCCCchhhhhhh
Confidence 100001111111111123478999999 56889999999999999994
No 206
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.70 E-value=5.7e-17 Score=134.55 Aligned_cols=223 Identities=12% Similarity=0.114 Sum_probs=173.4
Q ss_pred eeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeE------E
Q 048511 32 IRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQV------S 105 (351)
Q Consensus 32 V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~ 105 (351)
-..+.++ .+|+.|+.++.-|.|..+|..+.....++... ..+..+.|-.+.++++++...+.. .
T Consensus 132 PY~~~yt--------rnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~--Etv~Dv~~LHneq~~AVAQK~y~yvYD~~Gt 201 (545)
T KOG1272|consen 132 PYHLDYT--------RNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM--ETVRDVTFLHNEQFFAVAQKKYVYVYDNNGT 201 (545)
T ss_pred Ceeeeec--------CCccEEEecCCccceeeeecccceeeeeeehh--hhhhhhhhhcchHHHHhhhhceEEEecCCCc
Confidence 4567888 89999999999999999999998776655432 366677787777777776654432 2
Q ss_pred EEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC
Q 048511 106 VESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP 185 (351)
Q Consensus 106 ~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~ 185 (351)
....++.| ..|..+.|.| .--+ |++++..|.++--|+.. |+.+..+. ...+.+..++-+|
T Consensus 202 ElHClk~~-~~v~rLeFLP------yHfL------L~~~~~~G~L~Y~DVS~--GklVa~~~-----t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 202 ELHCLKRH-IRVARLEFLP------YHFL------LVAASEAGFLKYQDVST--GKLVASIR-----TGAGRTDVMKQNP 261 (545)
T ss_pred EEeehhhc-Cchhhhcccc------hhhe------eeecccCCceEEEeech--hhhhHHHH-----ccCCccchhhcCC
Confidence 33445544 4688999995 4445 99999999999999999 77776665 4556778888999
Q ss_pred CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceE
Q 048511 186 DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWH 265 (351)
Q Consensus 186 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 265 (351)
-+..+-+|...|+|.+|..... .++..+..|.++|.+|++.++|+|++|.+.|..++|||+++..
T Consensus 262 ~NaVih~GhsnGtVSlWSP~sk-----ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~---------- 326 (545)
T KOG1272|consen 262 YNAVIHLGHSNGTVSLWSPNSK-----EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY---------- 326 (545)
T ss_pred ccceEEEcCCCceEEecCCCCc-----chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc----------
Confidence 9999999999999999998886 5677888899999999999999999999999999999998776
Q ss_pred EeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511 266 EVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE 304 (351)
Q Consensus 266 ~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~ 304 (351)
.+..... ..+...++++. ..+||. +....|.||.
T Consensus 327 ql~t~~t-p~~a~~ls~Sq---kglLA~-~~G~~v~iw~ 360 (545)
T KOG1272|consen 327 QLHTYRT-PHPASNLSLSQ---KGLLAL-SYGDHVQIWK 360 (545)
T ss_pred ccceeec-CCCcccccccc---ccceee-ecCCeeeeeh
Confidence 2222222 23467888986 344444 4555889997
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.69 E-value=2.5e-15 Score=130.35 Aligned_cols=237 Identities=16% Similarity=0.268 Sum_probs=175.6
Q ss_pred ceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEe-
Q 048511 31 WIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL- 109 (351)
Q Consensus 31 ~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~- 109 (351)
.|..++|. |+|..|+.+.. ..+.+||.+.+..++... .+...+.+++|+.+|+.+++|+.+..+.+|..
T Consensus 14 ci~d~afk--------PDGsqL~lAAg-~rlliyD~ndG~llqtLK-gHKDtVycVAys~dGkrFASG~aDK~VI~W~~k 83 (1081)
T KOG1538|consen 14 CINDIAFK--------PDGTQLILAAG-SRLLVYDTSDGTLLQPLK-GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK 83 (1081)
T ss_pred chheeEEC--------CCCceEEEecC-CEEEEEeCCCcccccccc-cccceEEEEEEccCCceeccCCCceeEEEeccc
Confidence 79999999 78887777664 468999999987765443 45677889999999999999998888877754
Q ss_pred -----ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEc
Q 048511 110 -----LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWS 184 (351)
Q Consensus 110 -----~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 184 (351)
-..|.+.|.|+.|+ |-... |++++-. ..-+|.... .. +... .....+.+.+|.
T Consensus 84 lEG~LkYSH~D~IQCMsFN------P~~h~------LasCsLs-dFglWS~~q--K~-V~K~------kss~R~~~CsWt 141 (1081)
T KOG1538|consen 84 LEGILKYSHNDAIQCMSFN------PITHQ------LASCSLS-DFGLWSPEQ--KS-VSKH------KSSSRIICCSWT 141 (1081)
T ss_pred ccceeeeccCCeeeEeecC------chHHH------hhhcchh-hccccChhh--hh-HHhh------hhheeEEEeeec
Confidence 23588899999999 45556 8887654 366887765 11 1111 234468889999
Q ss_pred CCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCC-----CEEEEEeCCCcEEEEcCCCcccccc
Q 048511 185 PDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSS-----DYLLSVSHDQTTRVFAPWKNVASLM 259 (351)
Q Consensus 185 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~-----~~l~s~~~dg~i~vwd~~~~~~~~~ 259 (351)
.||++++.|-.+|+|.+-+-...+. ..+...-+..++|++++|+|.. ..+++.....++.++.+...
T Consensus 142 nDGqylalG~~nGTIsiRNk~gEek---~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~----- 213 (1081)
T KOG1538|consen 142 NDGQYLALGMFNGTISIRNKNGEEK---VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK----- 213 (1081)
T ss_pred CCCcEEEEeccCceEEeecCCCCcc---eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-----
Confidence 9999999999999999875433221 2233444577899999999963 46777778888888876432
Q ss_pred CccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhceee
Q 048511 260 GENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLNH 315 (351)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~ 315 (351)
.+.+.+.-+-...|+.+.+ +|.+++.|+.|+.+++|..+|-.+.++..
T Consensus 214 ------~Igk~r~L~FdP~CisYf~--NGEy~LiGGsdk~L~~fTR~GvrLGTvg~ 261 (1081)
T KOG1538|consen 214 ------QIGKDRALNFDPCCISYFT--NGEYILLGGSDKQLSLFTRDGVRLGTVGE 261 (1081)
T ss_pred ------eecccccCCCCchhheecc--CCcEEEEccCCCceEEEeecCeEEeeccc
Confidence 3444444455678999999 99999999999999999988766665543
No 208
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=4.6e-15 Score=127.05 Aligned_cols=220 Identities=15% Similarity=0.188 Sum_probs=147.6
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCC-----------
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALR----------- 69 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~----------- 69 (351)
+|+.||+|+||.+.+ + .++.+.. -.+.|.||+|+ |. ++-..||.+-.+ .+.|-+..-+
T Consensus 417 sGsdDGtvriWEi~T-g--Rcvr~~~-~d~~I~~vaw~----P~--~~~~vLAvA~~~-~~~ivnp~~G~~~e~~~t~el 485 (733)
T KOG0650|consen 417 SGSDDGTVRIWEIAT-G--RCVRTVQ-FDSEIRSVAWN----PL--SDLCVLAVAVGE-CVLIVNPIFGDRLEVGPTKEL 485 (733)
T ss_pred ecCCCCcEEEEEeec-c--eEEEEEe-ecceeEEEEec----CC--CCceeEEEEecC-ceEEeCccccchhhhcchhhh
Confidence 589999999999999 8 4555554 25589999999 33 333445544333 2333332111
Q ss_pred ----------------------cccc---eeecccccceeeeEeeecCCeEEecCCc---eeEEEEE-------------
Q 048511 70 ----------------------GSSA---NTQSTYRKEVISLASYIEGPVLVAGSSS---YQVSVES------------- 108 (351)
Q Consensus 70 ----------------------~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~------------- 108 (351)
.... .+...+...+..+.|+..|.+|++...+ ..+.+.+
T Consensus 486 l~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ks 565 (733)
T KOG0650|consen 486 LASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKS 565 (733)
T ss_pred hhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhc
Confidence 1000 1122235567788899999998874321 1111100
Q ss_pred ------------------------------------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511 109 ------------------------------------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI 152 (351)
Q Consensus 109 ------------------------------------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i 152 (351)
.+......|..++.+ +.|.- |+.++.|+.+..
T Consensus 566 kG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msih------p~GDn------li~gs~d~k~~W 633 (733)
T KOG0650|consen 566 KGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIH------PNGDN------LILGSYDKKMCW 633 (733)
T ss_pred CCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeec------CCCCe------EEEecCCCeeEE
Confidence 011223456666676 56666 999999999999
Q ss_pred EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcc--cC--cccCccccccccccccc----
Q 048511 153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNV--GV--DIDNWQPQKVPSGHFAA---- 224 (351)
Q Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~--~~--~~~~~~~~~~~~~~~~~---- 224 (351)
+|+.... +..+++. .|...+++++|++.-.++++|+.||++.||--. +. +.....+++.+.+|...
T Consensus 634 fDldlss-kPyk~lr-----~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~g 707 (733)
T KOG0650|consen 634 FDLDLSS-KPYKTLR-----LHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLG 707 (733)
T ss_pred EEcccCc-chhHHhh-----hhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccc
Confidence 9998632 2223333 788899999999999999999999999998532 10 11112567888898765
Q ss_pred EEEEEeecCCCEEEEEeCCCcEEEE
Q 048511 225 VMDISWSRSSDYLLSVSHDQTTRVF 249 (351)
Q Consensus 225 v~~v~~sp~~~~l~s~~~dg~i~vw 249 (351)
|..+.|+|...+|++++.||+|++|
T Consensus 708 VLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 708 VLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eEeecccCCCceEEecCCCceEEee
Confidence 8899999999999999999999998
No 209
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.4e-15 Score=129.27 Aligned_cols=240 Identities=17% Similarity=0.147 Sum_probs=159.7
Q ss_pred eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEec
Q 048511 19 FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAG 98 (351)
Q Consensus 19 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 98 (351)
+....++..|.+.|+.++|. +....|++++.||+|++|++......
T Consensus 284 w~ik~tl~s~~d~ir~l~~~--------~sep~lit~sed~~lk~WnLqk~~~s-------------------------- 329 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFH--------PSEPVLITASEDGTLKLWNLQKAKKS-------------------------- 329 (577)
T ss_pred cceeeeeecchhhhhhhhcC--------CCCCeEEEeccccchhhhhhcccCCc--------------------------
Confidence 44455888899999999999 77889999999999999999542111
Q ss_pred CCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEE----EEecccccc
Q 048511 99 SSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNV----VTVGELSHS 174 (351)
Q Consensus 99 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~ 174 (351)
....+..+-++.+|.++|.|+++. .++.. +.+|+.||+|+.|++... ...-.. .-...+.+|
T Consensus 330 -~~~~~epi~tfraH~gPVl~v~v~------~n~~~------~ysgg~Dg~I~~w~~p~n-~dp~ds~dp~vl~~~l~Gh 395 (577)
T KOG0642|consen 330 -AEKDVEPILTFRAHEGPVLCVVVP------SNGEH------CYSGGIDGTIRCWNLPPN-QDPDDSYDPSVLSGTLLGH 395 (577)
T ss_pred -cccceeeeEEEecccCceEEEEec------CCceE------EEeeccCceeeeeccCCC-CCcccccCcchhccceecc
Confidence 112234556789999999999999 78888 999999999999976531 111000 111224489
Q ss_pred ccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEE-EEEeCCCcEEEEcCCC
Q 048511 175 ALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYL-LSVSHDQTTRVFAPWK 253 (351)
Q Consensus 175 ~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l-~s~~~dg~i~vwd~~~ 253 (351)
...++.+++++....|++++.||++++|+...... +........+...++.+-.....+ ++...-+.-.++++..
T Consensus 396 tdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~----~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev 471 (577)
T KOG0642|consen 396 TDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP----CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEV 471 (577)
T ss_pred ccceeeeeecccccceeeecCCceEEeeccCCcCc----cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhh
Confidence 99999999999999999999999999999876531 111111122334556554433122 2222223333333333
Q ss_pred ccccccCccceEEecccc----ccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecccc
Q 048511 254 NVASLMGENSWHEVARPQ----VHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATFQ 319 (351)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~ 319 (351)
.. ....+.... .....+..+.++| +..+.+++.+|+.|+++|.. +..+.....+...
T Consensus 472 ~s-------~~~~~~s~~~~~~~~~~~in~vVs~~--~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~s 533 (577)
T KOG0642|consen 472 VS-------DLLIFESSASPGPRRYPQINKVVSHP--TADITFTAHEDRSIRFFDNKTGKILHSMVAHKDS 533 (577)
T ss_pred hh-------heeeccccCCCcccccCccceEEecC--CCCeeEecccCCceecccccccccchheeeccce
Confidence 32 111111110 1112377888888 78999999999999999976 8777776665533
No 210
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.67 E-value=2.9e-14 Score=131.53 Aligned_cols=272 Identities=12% Similarity=0.092 Sum_probs=173.2
Q ss_pred CCCCCceEEEEEccC----CCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccc----
Q 048511 1 MGGLDNKIHLYRGQR----TGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSS---- 72 (351)
Q Consensus 1 tg~~dg~i~vw~~~~----~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~---- 72 (351)
|||.||+|++|+... .+......++.--...+.++.+. +.++.+|.++.||.|++.+++.....
T Consensus 1066 sgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~--------~~~~~~Av~t~DG~v~~~~id~~~~~~~~~ 1137 (1431)
T KOG1240|consen 1066 SGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMC--------GNGDQFAVSTKDGSVRVLRIDHYNVSKRVA 1137 (1431)
T ss_pred EecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEec--------cCCCeEEEEcCCCeEEEEEcccccccccee
Confidence 689999999999764 13334444555456789999999 88999999999999999999763111
Q ss_pred ---ceeecccccceeeeE-eee-cC-CeEEecCCceeEEEEEec----------cccccceEEEEecCCCCCCCCCcccC
Q 048511 73 ---ANTQSTYRKEVISLA-SYI-EG-PVLVAGSSSYQVSVESLL----------IGHEDWVYSVQWEPPSTAPSDGVSCQ 136 (351)
Q Consensus 73 ---~~~~~~~~~~~~~~~-~~~-~~-~~l~~~~~~~~~~~~~~~----------~~h~~~v~~l~~~p~~~~~~~~~~~~ 136 (351)
........+.+.+|. +.. .. ..++.+...+.+..|... .-..+.|++++.+ +.++.
T Consensus 1138 ~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~id------p~~~W-- 1209 (1431)
T KOG1240|consen 1138 TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVID------PWCNW-- 1209 (1431)
T ss_pred eeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEec------CCceE--
Confidence 111111122233332 222 12 245555555555444432 2234679999999 67778
Q ss_pred CCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCC---CEEEEEe--eCCeEEEEEcccCcccC
Q 048511 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG---RSILAHG--YGGAFHLWRNVGVDIDN 211 (351)
Q Consensus 137 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~---~~l~~~~--~dg~i~~~d~~~~~~~~ 211 (351)
+++|...|.+.+||++- +..+..... .+..+|+.+..+|-. ...++++ ..+.|.+|++.++..
T Consensus 1210 ----lviGts~G~l~lWDLRF--~~~i~sw~~----P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~-- 1277 (1431)
T KOG1240|consen 1210 ----LVIGTSRGQLVLWDLRF--RVPILSWEH----PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR-- 1277 (1431)
T ss_pred ----EEEecCCceEEEEEeec--CceeecccC----cccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc--
Confidence 99999999999999998 666555542 334678888777633 4555544 468899999988732
Q ss_pred ccccccccc-------------------ccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccccc-------------
Q 048511 212 WQPQKVPSG-------------------HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM------------- 259 (351)
Q Consensus 212 ~~~~~~~~~-------------------~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~------------- 259 (351)
...+.. +.-.....++...+..+.+|+.|..|+.||........-
T Consensus 1278 ---~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~ 1354 (1431)
T KOG1240|consen 1278 ---QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNS 1354 (1431)
T ss_pred ---eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccc
Confidence 111111 111112223333456889999999999999876654400
Q ss_pred -------------------------CccceEEe--------ccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511 260 -------------------------GENSWHEV--------ARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE 304 (351)
Q Consensus 260 -------------------------~~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~ 304 (351)
........ .....|...|+++++... +..+|++++.||.|+||.
T Consensus 1355 ~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~-~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1355 ESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKS-EQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhcc-CccEEEEecCCCeeeecC
Confidence 00000000 011246677999998872 367999999999999994
No 211
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=1.1e-14 Score=118.59 Aligned_cols=210 Identities=9% Similarity=0.032 Sum_probs=153.9
Q ss_pred cCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEE
Q 048511 28 HTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVE 107 (351)
Q Consensus 28 h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 107 (351)
-+++|..++.. ...|++|-.+|.+.+|....+.......
T Consensus 104 ~~~~I~gl~~~----------dg~Litc~~sG~l~~~~~k~~d~hss~l------------------------------- 142 (412)
T KOG3881|consen 104 GTKSIKGLKLA----------DGTLITCVSSGNLQVRHDKSGDLHSSKL------------------------------- 142 (412)
T ss_pred ccccccchhhc----------CCEEEEEecCCcEEEEeccCCccccccc-------------------------------
Confidence 34556666554 4578888889999999987553210000
Q ss_pred EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC--CeEEEEeccCCCcceEEEEE--ecccc--ccccceEEE
Q 048511 108 SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD--KTMMIWQPEKTTGIWMNVVT--VGELS--HSALGFYGG 181 (351)
Q Consensus 108 ~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~--~~~~~--~~~~~i~~i 181 (351)
..+..+ ..+..+.-.| .+..+ +++|+.. ..+.|||++. ...+..-+ ....- .-.-+++.+
T Consensus 143 ~~la~g-~g~~~~r~~~-----~~p~I------va~GGke~~n~lkiwdle~--~~qiw~aKNvpnD~L~LrVPvW~tdi 208 (412)
T KOG3881|consen 143 IKLATG-PGLYDVRQTD-----TDPYI------VATGGKENINELKIWDLEQ--SKQIWSAKNVPNDRLGLRVPVWITDI 208 (412)
T ss_pred eeeecC-CceeeeccCC-----CCCce------EecCchhcccceeeeeccc--ceeeeeccCCCCccccceeeeeeccc
Confidence 011111 3455555554 33344 8889998 8899999998 33222111 00000 112346788
Q ss_pred EEcCC--CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccccc
Q 048511 182 HWSPD--GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM 259 (351)
Q Consensus 182 ~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~ 259 (351)
.|-+. ...|++++.-+.+++||.+.++ .|+.++.-.+.+|+++...|+++++++|..-+.+..||.+.+..
T Consensus 209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qR----RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl--- 281 (412)
T KOG3881|consen 209 RFLEGSPNYKFATITRYHQVRLYDTRHQR----RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL--- 281 (412)
T ss_pred eecCCCCCceEEEEecceeEEEecCcccC----cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee---
Confidence 89887 7899999999999999999875 77888888888999999999999999999999999999998872
Q ss_pred CccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511 260 GENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 307 (351)
....+.+..+.|+++..+| ...+++++|-|..|||+|+..
T Consensus 282 ------~g~~~kg~tGsirsih~hp--~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 282 ------LGCGLKGITGSIRSIHCHP--THPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred ------eccccCCccCCcceEEEcC--CCceEEeeccceeEEEeeccc
Confidence 3344677788899999999 789999999999999999874
No 212
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=1.9e-13 Score=108.75 Aligned_cols=170 Identities=17% Similarity=0.231 Sum_probs=124.9
Q ss_pred ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCC-Ccccceeeccc-ccce
Q 048511 6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLAL-RGSSANTQSTY-RKEV 83 (351)
Q Consensus 6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~-~~~~~~~~~~~-~~~~ 83 (351)
+.+.|||-.. . .++.++. -..+|.+|.+. .+.|+..- ++.|.||.+.+ .+.+..+.... +...
T Consensus 75 NkviIWDD~k-~--~~i~el~-f~~~I~~V~l~----------r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGl 139 (346)
T KOG2111|consen 75 NKVIIWDDLK-E--RCIIELS-FNSEIKAVKLR----------RDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGL 139 (346)
T ss_pred ceEEEEeccc-C--cEEEEEE-eccceeeEEEc----------CCeEEEEe-cCeEEEEEcCCChhheeeeecccCCCce
Confidence 5799999444 3 4555554 46799999998 44666554 57899999984 44444444433 2333
Q ss_pred eeeEeeecCCeEEe-cCCceeEEEEE----------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCe-EE
Q 048511 84 ISLASYIEGPVLVA-GSSSYQVSVES----------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT-MM 151 (351)
Q Consensus 84 ~~~~~~~~~~~l~~-~~~~~~~~~~~----------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~-i~ 151 (351)
.++.-..+..+|+. |...+++++.. .+.+|...|.|++.+ .+|.+ +||+|..|+ ||
T Consensus 140 C~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln------~~Gt~------vATaStkGTLIR 207 (346)
T KOG2111|consen 140 CSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALN------LQGTL------VATASTKGTLIR 207 (346)
T ss_pred EeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEc------CCccE------EEEeccCcEEEE
Confidence 33333334444444 45566665543 456899999999999 89999 999999998 88
Q ss_pred EEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccC
Q 048511 152 IWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGV 207 (351)
Q Consensus 152 iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~ 207 (351)
|||.++ +..+..++.+ .....|++++|+|+..+|++++..|+++||.++..
T Consensus 208 IFdt~~--g~~l~E~RRG---~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 208 IFDTED--GTLLQELRRG---VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEcCC--CcEeeeeecC---CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 999999 8888887743 34557999999999999999999999999999764
No 213
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.65 E-value=5e-13 Score=115.13 Aligned_cols=227 Identities=12% Similarity=0.080 Sum_probs=143.5
Q ss_pred CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC-CCcEEEEecCCCcccc-eee-cccc
Q 048511 4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ-DKVIRIWKLALRGSSA-NTQ-STYR 80 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~-~~~-~~~~ 80 (351)
.++.|.+|+++.++++....... ..+....+.|+ +++++|++++. ++.|.+|++.+..... ... ....
T Consensus 55 ~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~--------~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~ 125 (330)
T PRK11028 55 PEFRVLSYRIADDGALTFAAESP-LPGSPTHISTD--------HQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL 125 (330)
T ss_pred CCCcEEEEEECCCCceEEeeeec-CCCCceEEEEC--------CCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCC
Confidence 46889999997435554444333 33456789999 88988888764 8899999997433221 111 1112
Q ss_pred cceeeeEeeecCCeEEecC-CceeEEEEEecc-c-------------cccceEEEEecCCCCCCCCCcccCCCceeEEee
Q 048511 81 KEVISLASYIEGPVLVAGS-SSYQVSVESLLI-G-------------HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS 145 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~-~-------------h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~ 145 (351)
.....++++|+++.+++.+ .+..+.++..-. + .......+.|+ +++++ ++++.
T Consensus 126 ~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~------pdg~~------lyv~~ 193 (330)
T PRK11028 126 EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFH------PNQQY------AYCVN 193 (330)
T ss_pred CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEEC------CCCCE------EEEEe
Confidence 3456778999998886544 446666655422 1 01224678999 78888 77776
Q ss_pred c-CCeEEEEeccCCCcce--EEEEEecccc-ccccceEEEEEcCCCCEEEEEee-CCeEEEEEcccCcccCccccccccc
Q 048511 146 M-DKTMMIWQPEKTTGIW--MNVVTVGELS-HSALGFYGGHWSPDGRSILAHGY-GGAFHLWRNVGVDIDNWQPQKVPSG 220 (351)
Q Consensus 146 ~-d~~i~iwd~~~~~~~~--~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~ 220 (351)
. ++.|.+||+....+.. +..+...... ........+.++|++++++++.. ++.|.+|++...... .+.+.....
T Consensus 194 ~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~-~~~~~~~~~ 272 (330)
T PRK11028 194 ELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV-LSFEGHQPT 272 (330)
T ss_pred cCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe-EEEeEEEec
Confidence 5 8999999998422332 2222211000 11122346889999999998864 689999999654210 111222111
Q ss_pred ccccEEEEEeecCCCEEEEEeC-CCcEEEEcCCC
Q 048511 221 HFAAVMDISWSRSSDYLLSVSH-DQTTRVFAPWK 253 (351)
Q Consensus 221 ~~~~v~~v~~sp~~~~l~s~~~-dg~i~vwd~~~ 253 (351)
......+.++|+|++|+++.. +++|.+|++..
T Consensus 273 -~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 273 -ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred -cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 124567899999999987765 89999998753
No 214
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.63 E-value=2.9e-15 Score=126.70 Aligned_cols=164 Identities=14% Similarity=0.188 Sum_probs=114.1
Q ss_pred CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeE--EE
Q 048511 29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQV--SV 106 (351)
Q Consensus 29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~ 106 (351)
...|+|+.|- | .+...++.+-.+|.+.++|....... ...+....+++..+.+....... ..
T Consensus 219 ktsvT~ikWv----p---g~~~~Fl~a~~sGnlyly~~~~~~~~---------t~p~~~~~k~~~~f~i~t~ksk~~rNP 282 (636)
T KOG2394|consen 219 KSSVTCIKWV----P---GSDSLFLVAHASGNLYLYDKEIVCGA---------TAPSYQALKDGDQFAILTSKSKKTRNP 282 (636)
T ss_pred ccceEEEEEE----e---CCCceEEEEEecCceEEeeccccccC---------CCCcccccCCCCeeEEeeeeccccCCc
Confidence 3689999999 3 34456666778999999987322111 01111112233333332111111 11
Q ss_pred EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCC
Q 048511 107 ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD 186 (351)
Q Consensus 107 ~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 186 (351)
+..+.--.+.|+.++|+ +||++ ||+.+.||.+||||..+ .+.+..++ ..-+...|++|+||
T Consensus 283 v~~w~~~~g~in~f~FS------~DG~~------LA~VSqDGfLRvF~fdt--~eLlg~mk-----SYFGGLLCvcWSPD 343 (636)
T KOG2394|consen 283 VARWHIGEGSINEFAFS------PDGKY------LATVSQDGFLRIFDFDT--QELLGVMK-----SYFGGLLCVCWSPD 343 (636)
T ss_pred cceeEeccccccceeEc------CCCce------EEEEecCceEEEeeccH--HHHHHHHH-----hhccceEEEEEcCC
Confidence 11112233479999999 89999 99999999999999998 44444333 34567899999999
Q ss_pred CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511 187 GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR 232 (351)
Q Consensus 187 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 232 (351)
|++|++|+.|..|.||.+... +.+..-++|.++|..|+|.|
T Consensus 344 GKyIvtGGEDDLVtVwSf~er-----RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 344 GKYIVTGGEDDLVTVWSFEER-----RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ccEEEecCCcceEEEEEeccc-----eEEEeccccccceeeEeecc
Confidence 999999999999999999887 56888899999999999983
No 215
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.62 E-value=5e-14 Score=110.51 Aligned_cols=139 Identities=12% Similarity=0.178 Sum_probs=100.6
Q ss_pred CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEE--eeCCeEEEEEcccCcccCcccccccccccccE
Q 048511 148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAH--GYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAV 225 (351)
Q Consensus 148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~--~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v 225 (351)
+...+|.++.. ......+.+ ....+|.+++|+|+++.+++. ..+..|.+||++. ..+..+. ...+
T Consensus 37 ~~~~l~~~~~~-~~~~~~i~l----~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~------~~i~~~~--~~~~ 103 (194)
T PF08662_consen 37 GEFELFYLNEK-NIPVESIEL----KKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG------KKIFSFG--TQPR 103 (194)
T ss_pred eeEEEEEEecC-CCccceeec----cCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc------cEeEeec--CCCc
Confidence 44666666542 222333331 234569999999999987654 3567999999974 3455553 4567
Q ss_pred EEEEeecCCCEEEEEeC---CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecC------
Q 048511 226 MDISWSRSSDYLLSVSH---DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD------ 296 (351)
Q Consensus 226 ~~v~~sp~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~------ 296 (351)
..+.|+|+|++|++++. .|.|.+||+++.+ .+.... | ..++.++|+| +|++|+++..
T Consensus 104 n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~----------~i~~~~-~-~~~t~~~WsP--dGr~~~ta~t~~r~~~ 169 (194)
T PF08662_consen 104 NTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK----------KISTFE-H-SDATDVEWSP--DGRYLATATTSPRLRV 169 (194)
T ss_pred eEEEECCCCCEEEEEEccCCCcEEEEEECCCCE----------Eeeccc-c-CcEEEEEEcC--CCCEEEEEEeccceec
Confidence 88999999999998874 4679999998665 454443 2 2478999999 9999998874
Q ss_pred CCeEEEEecCchhhhce
Q 048511 297 EKVARVFEAPLSFLKTL 313 (351)
Q Consensus 297 dg~v~vw~~~~~~~~~~ 313 (351)
|..++||+..|+.+...
T Consensus 170 dng~~Iw~~~G~~l~~~ 186 (194)
T PF08662_consen 170 DNGFKIWSFQGRLLYKK 186 (194)
T ss_pred cccEEEEEecCeEeEec
Confidence 78899999998766543
No 216
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.61 E-value=7.5e-14 Score=112.18 Aligned_cols=274 Identities=18% Similarity=0.247 Sum_probs=170.2
Q ss_pred CCCCCceEEEEEccCC--CceEEEEeeeecC------------CceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEec
Q 048511 1 MGGLDNKIHLYRGQRT--GKFVRACELKGHT------------DWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKL 66 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~--~~~~~~~~~~~h~------------~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~ 66 (351)
||..+|.|.+|.-+.. +++.....++.|. ..|..+.|. +. .+...++..+.|.+|++|.+
T Consensus 42 tGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~----~~--~n~a~FLlstNdktiKlWKi 115 (433)
T KOG1354|consen 42 TGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWL----DD--GNLAEFLLSTNDKTIKLWKI 115 (433)
T ss_pred ecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceec----CC--CCccEEEEecCCcceeeeee
Confidence 6889999999975541 3444556677775 468899998 32 44557777888999999999
Q ss_pred CCCcccce-eeccc---ccceeeeEeeecCCeEEecCCcee--EEEEEe-ccccccceEEEEecCCCCCCCCCcccCCCc
Q 048511 67 ALRGSSAN-TQSTY---RKEVISLASYIEGPVLVAGSSSYQ--VSVESL-LIGHEDWVYSVQWEPPSTAPSDGVSCQQPS 139 (351)
Q Consensus 67 ~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~-~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~ 139 (351)
........ ..... ...+.++. ....+..+.. ..+.+. ..+|+--|+++.++ .|.+.
T Consensus 116 ~er~~k~~~~~~~~~~~~~~~~~lr------~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N------sD~Et----- 178 (433)
T KOG1354|consen 116 RERGSKKEGYNLPEEGPPGTITSLR------LPVEGRHDLEVEASPRRVYANAHTYHINSISVN------SDKET----- 178 (433)
T ss_pred eccccccccccccccCCCCccceee------ceeeccccceeeeeeeeeccccceeEeeeeeec------Cccce-----
Confidence 76543321 10000 00111110 1111111111 122222 24688889999999 78887
Q ss_pred eeEEeecCCeEEEEeccCCCcc-eEEEEEeccccccccceEEEEEcCC-CCEEEEEeeCCeEEEEEcccCccc-----Cc
Q 048511 140 SILSASMDKTMMIWQPEKTTGI-WMNVVTVGELSHSALGFYGGHWSPD-GRSILAHGYGGAFHLWRNVGVDID-----NW 212 (351)
Q Consensus 140 ~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~-----~~ 212 (351)
++++ .|-.|.+|+++-..+. .+..++...+..-..-|++..|+|. .+.++-++..|+|++.|++..-.. .+
T Consensus 179 -~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlf 256 (433)
T KOG1354|consen 179 -FLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLF 256 (433)
T ss_pred -Eeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence 7776 6778999999863222 2223333333334456889999995 467778888999999999853210 00
Q ss_pred c------cccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccccccc-----------
Q 048511 213 Q------PQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGH----------- 275 (351)
Q Consensus 213 ~------~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~----------- 275 (351)
. ...-+..--..|..+.|+++|+|+++-.. -+|++||+..... ++...+.|..
T Consensus 257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~---------pv~t~~vh~~lr~kLc~lYEn 326 (433)
T KOG1354|consen 257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAK---------PVETYPVHEYLRSKLCSLYEN 326 (433)
T ss_pred ccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCC---------cceEEeehHhHHHHHHHHhhc
Confidence 0 00111112346888999999999997643 6899999955442 2322233321
Q ss_pred ----ceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhh
Q 048511 276 ----DINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLK 311 (351)
Q Consensus 276 ----~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~ 311 (351)
.-..++|+. ++..+++|+....+++|++.....+
T Consensus 327 D~IfdKFec~~sg--~~~~v~TGsy~n~frvf~~~~gsk~ 364 (433)
T KOG1354|consen 327 DAIFDKFECSWSG--NDSYVMTGSYNNVFRVFNLARGSKE 364 (433)
T ss_pred cchhheeEEEEcC--CcceEecccccceEEEecCCCCcce
Confidence 135677887 7889999999999999996633333
No 217
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=4e-14 Score=115.46 Aligned_cols=217 Identities=9% Similarity=0.101 Sum_probs=150.7
Q ss_pred CCCCceEEEEEccCCCc--eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCC--CcEEEEecCCCcccceeec
Q 048511 2 GGLDNKIHLYRGQRTGK--FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQD--KVIRIWKLALRGSSANTQS 77 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~--~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d--g~i~iwd~~~~~~~~~~~~ 77 (351)
|-.+|.+++|..+. +. -..+..+..+ ..+..|.-+ + .....+|+||.. ..+++||++..+.+.....
T Consensus 121 c~~sG~l~~~~~k~-~d~hss~l~~la~g-~g~~~~r~~----~---~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKN 191 (412)
T KOG3881|consen 121 CVSSGNLQVRHDKS-GDLHSSKLIKLATG-PGLYDVRQT----D---TDPYIVATGGKENINELKIWDLEQSKQIWSAKN 191 (412)
T ss_pred EecCCcEEEEeccC-CccccccceeeecC-CceeeeccC----C---CCCceEecCchhcccceeeeecccceeeeeccC
Confidence 45688899998884 21 1223333333 345566655 2 344577779988 8899999987644332221
Q ss_pred ccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC
Q 048511 78 TYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK 157 (351)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 157 (351)
..+ ..+. + .-.-+++++.|.|.. +... ||+++.-+.+++||.+.
T Consensus 192 vpn-D~L~------------------------L-rVPvW~tdi~Fl~g~----~~~~------fat~T~~hqvR~YDt~~ 235 (412)
T KOG3881|consen 192 VPN-DRLG------------------------L-RVPVWITDIRFLEGS----PNYK------FATITRYHQVRLYDTRH 235 (412)
T ss_pred CCC-cccc------------------------c-eeeeeeccceecCCC----CCce------EEEEecceeEEEecCcc
Confidence 100 0000 0 012346788888521 1445 99999999999999996
Q ss_pred CCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEE
Q 048511 158 TTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYL 237 (351)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l 237 (351)
+ ..++..+. ..+.+++++...|.++.+++|..-+.+..||++.++ .....+.+-.+.|++|..+|.+++|
T Consensus 236 q-RRPV~~fd-----~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k----l~g~~~kg~tGsirsih~hp~~~~l 305 (412)
T KOG3881|consen 236 Q-RRPVAQFD-----FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK----LLGCGLKGITGSIRSIHCHPTHPVL 305 (412)
T ss_pred c-CcceeEec-----cccCcceeeeecCCCcEEEEecccchhheecccCce----eeccccCCccCCcceEEEcCCCceE
Confidence 3 44555555 446789999999999999999999999999999985 3455588889999999999999999
Q ss_pred EEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEee
Q 048511 238 LSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQ 284 (351)
Q Consensus 238 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 284 (351)
++++-|+.|||+|+++.+ .+... .-...++++-+.+
T Consensus 306 as~GLDRyvRIhD~ktrk----------ll~kv-YvKs~lt~il~~~ 341 (412)
T KOG3881|consen 306 ASCGLDRYVRIHDIKTRK----------LLHKV-YVKSRLTFILLRD 341 (412)
T ss_pred EeeccceeEEEeecccch----------hhhhh-hhhccccEEEecC
Confidence 999999999999998865 22221 2233467777755
No 218
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.60 E-value=5.1e-13 Score=106.91 Aligned_cols=254 Identities=14% Similarity=0.138 Sum_probs=168.6
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCc-cEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAIS-ILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
...|+.|.+|++.. -++. ..+..-.+++.++.|+ |+| ..|.+..-|-.|.+|.+.+........ ..
T Consensus 67 ~yk~~~vqvwsl~Q-pew~--ckIdeg~agls~~~WS--------PdgrhiL~tseF~lriTVWSL~t~~~~~~~~--pK 133 (447)
T KOG4497|consen 67 AYKDPKVQVWSLVQ-PEWY--CKIDEGQAGLSSISWS--------PDGRHILLTSEFDLRITVWSLNTQKGYLLPH--PK 133 (447)
T ss_pred eeccceEEEEEeec-ceeE--EEeccCCCcceeeeEC--------CCcceEeeeecceeEEEEEEeccceeEEecc--cc
Confidence 35688999999987 5443 4666667899999999 778 566677889999999998765432211 12
Q ss_pred cceeeeEeeecCCeEEecCCce------------------------------------eEEEEEe------cccc-ccce
Q 048511 81 KEVISLASYIEGPVLVAGSSSY------------------------------------QVSVESL------LIGH-EDWV 117 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~------------------------------------~~~~~~~------~~~h-~~~v 117 (351)
......+|+++|++.+...+.. .+.++.. +.-| .-.+
T Consensus 134 ~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~ 213 (447)
T KOG4497|consen 134 TNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGL 213 (447)
T ss_pred cCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccce
Confidence 2345566777777666533211 0011111 0111 2357
Q ss_pred EEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC---------------C------------------------
Q 048511 118 YSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK---------------T------------------------ 158 (351)
Q Consensus 118 ~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---------------~------------------------ 158 (351)
..++|+ |.+++ |+.|+.|+.+|+.+--+ .
T Consensus 214 k~v~ws------P~~qf------lavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p 281 (447)
T KOG4497|consen 214 KFVEWS------PCNQF------LAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTP 281 (447)
T ss_pred eEEEec------cccce------EEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCC
Confidence 788899 67788 99999999998876432 0
Q ss_pred ---------Ccc--------e--EEEEE-eccccccccceEEEEEcCCCCEEEEEeeC--CeEEEEEcccCcccCccccc
Q 048511 159 ---------TGI--------W--MNVVT-VGELSHSALGFYGGHWSPDGRSILAHGYG--GAFHLWRNVGVDIDNWQPQK 216 (351)
Q Consensus 159 ---------~~~--------~--~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--g~i~~~d~~~~~~~~~~~~~ 216 (351)
+.+ . +..++ ....+.....+--++|++|..++++-... +.+.+||++..+ +.
T Consensus 282 ~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~------l~ 355 (447)
T KOG4497|consen 282 TDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK------LH 355 (447)
T ss_pred CccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh------hh
Confidence 000 0 00000 01112223456778999999999887644 789999998853 33
Q ss_pred ccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecC
Q 048511 217 VPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD 296 (351)
Q Consensus 217 ~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~ 296 (351)
..-....+|....|.|....|+.+.....+++|...... .+..+ ..+-.|..+.|.. +|..++-.+.
T Consensus 356 avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~----------~V~vP-~~GF~i~~l~W~~--~g~~i~l~~k 422 (447)
T KOG4497|consen 356 AVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR----------VVGVP-KKGFNIQKLQWLQ--PGEFIVLCGK 422 (447)
T ss_pred hhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCce----------EEecC-CCCceeeeEEecC--CCcEEEEEcC
Confidence 333356689999999999888888878889999875543 33333 3456799999998 8889998888
Q ss_pred CCe
Q 048511 297 EKV 299 (351)
Q Consensus 297 dg~ 299 (351)
|..
T Consensus 423 Daf 425 (447)
T KOG4497|consen 423 DAF 425 (447)
T ss_pred Cce
Confidence 864
No 219
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=2.6e-13 Score=107.94 Aligned_cols=163 Identities=12% Similarity=0.193 Sum_probs=116.1
Q ss_pred cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEE
Q 048511 113 HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILA 192 (351)
Q Consensus 113 h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 192 (351)
...+|.++.+. ++ . +++. ..+.|.||..... .+.++.+.. ........+++-..+..+|+.
T Consensus 93 f~~~I~~V~l~------r~--r------iVvv-l~~~I~VytF~~n-~k~l~~~et---~~NPkGlC~~~~~~~k~~Laf 153 (346)
T KOG2111|consen 93 FNSEIKAVKLR------RD--R------IVVV-LENKIYVYTFPDN-PKLLHVIET---RSNPKGLCSLCPTSNKSLLAF 153 (346)
T ss_pred eccceeeEEEc------CC--e------EEEE-ecCeEEEEEcCCC-hhheeeeec---ccCCCceEeecCCCCceEEEc
Confidence 35679999988 33 2 4444 4678999998842 333333332 122333444443334445555
Q ss_pred Ee-eCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCc-EEEEcCCCccccccCccceEEeccc
Q 048511 193 HG-YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQT-TRVFAPWKNVASLMGENSWHEVARP 270 (351)
Q Consensus 193 ~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~ 270 (351)
-+ .-|.|.|-|+...+. .+...+.+|.+.|.+++++.+|..+||+|..|+ |||||..++.. ..++.+-
T Consensus 154 Pg~k~GqvQi~dL~~~~~---~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~-------l~E~RRG 223 (346)
T KOG2111|consen 154 PGFKTGQVQIVDLASTKP---NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTL-------LQELRRG 223 (346)
T ss_pred CCCccceEEEEEhhhcCc---CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE-------eeeeecC
Confidence 44 459999999987642 235678899999999999999999999999987 79999999872 2233332
Q ss_pred cccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511 271 QVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 271 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 307 (351)
. ....|.|++|+| +..+|+++|+-|+++||.+..
T Consensus 224 ~-d~A~iy~iaFSp--~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 224 V-DRADIYCIAFSP--NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred C-chheEEEEEeCC--CccEEEEEcCCCeEEEEEeec
Confidence 1 224599999999 999999999999999999864
No 220
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.7e-13 Score=110.92 Aligned_cols=247 Identities=21% Similarity=0.302 Sum_probs=161.3
Q ss_pred CceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecC-CeEEecCCceeE----
Q 048511 30 DWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEG-PVLVAGSSSYQV---- 104 (351)
Q Consensus 30 ~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~---- 104 (351)
..+..++|+ +.-..+|++..|-+|++|+-.. .....+......++.+++|.|.+ ..++++...+..
T Consensus 99 ~dlr~~aWh--------qH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~ 169 (445)
T KOG2139|consen 99 IDLRGVAWH--------QHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSD 169 (445)
T ss_pred cceeeEeec--------hhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEc
Confidence 357788998 5566788999999999999876 55556666667799999999965 455555443321
Q ss_pred -------EE----------EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec-CCeEEEEeccCCCcceEEEE
Q 048511 105 -------SV----------ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM-DKTMMIWQPEKTTGIWMNVV 166 (351)
Q Consensus 105 -------~~----------~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~ 166 (351)
+. +....+| .+|++++|. +||.. +++++. |..|.|||+.++.+..+.
T Consensus 170 s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn------~dgt~------l~tAS~gsssi~iWdpdtg~~~pL~-- 234 (445)
T KOG2139|consen 170 SRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWN------EDGTI------LVTASFGSSSIMIWDPDTGQKIPLI-- 234 (445)
T ss_pred CcccccccccccccccchhheeCCCC-ceeeEEEEc------CCCCE------EeecccCcceEEEEcCCCCCccccc--
Confidence 00 0112344 689999999 78888 888875 678999999984333332
Q ss_pred EeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcE
Q 048511 167 TVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTT 246 (351)
Q Consensus 167 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i 246 (351)
. ...+.+.-+.|+||+.+|+++.-|+..++|+.... +...+...+ .+.|...+|+|+|++|+..+. |.-
T Consensus 235 ~-----~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~----wt~erw~lg-sgrvqtacWspcGsfLLf~~s-gsp 303 (445)
T KOG2139|consen 235 P-----KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQS----WTKERWILG-SGRVQTACWSPCGSFLLFACS-GSP 303 (445)
T ss_pred c-----cCCCceeeEEEcCCCCEEEEecccceeeeehhccc----ceecceecc-CCceeeeeecCCCCEEEEEEc-CCc
Confidence 1 23456888999999999999999999999976543 233333333 348999999999988654432 333
Q ss_pred EEEcCCCcccccc-----CccceEEecccc---------ccccceeEEEEeeeCCCcEEEEecCCC--------eEEEEe
Q 048511 247 RVFAPWKNVASLM-----GENSWHEVARPQ---------VHGHDINCVTIIQGKGNHRFVSGADEK--------VARVFE 304 (351)
Q Consensus 247 ~vwd~~~~~~~~~-----~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~l~s~~~dg--------~v~vw~ 304 (351)
++|.+........ ..+....+..++ .-.+.+.+++|.| .|.+||+.-..+ .|.+||
T Consensus 304 ~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDp--sGeyLav~fKg~~~v~~~k~~i~~fd 381 (445)
T KOG2139|consen 304 RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDP--SGEYLAVIFKGQSFVLLCKLHISRFD 381 (445)
T ss_pred eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECC--CCCEEEEEEcCCchhhhhhhhhhhhc
Confidence 4555432221110 001111111111 1245689999999 899998765433 366677
Q ss_pred cCchhhhce
Q 048511 305 APLSFLKTL 313 (351)
Q Consensus 305 ~~~~~~~~~ 313 (351)
........+
T Consensus 382 tr~sp~vel 390 (445)
T KOG2139|consen 382 TRKSPPVEL 390 (445)
T ss_pred ccccCceEE
Confidence 654433333
No 221
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=2.8e-14 Score=119.50 Aligned_cols=274 Identities=15% Similarity=0.150 Sum_probs=191.2
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc--eeecc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA--NTQST 78 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~--~~~~~ 78 (351)
+|+.|..|.+||+.. ++ ..+.-..||...|..-.|. |. .+...+++++.||.+++=.+....... .....
T Consensus 159 SgSDD~~vv~WdW~~-~~-~~l~f~SGH~~NvfQaKFi----P~--s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~ 230 (559)
T KOG1334|consen 159 SGSDDLQVVVWDWVS-GS-PKLSFESGHCNNVFQAKFI----PF--SGDRTIVTSSRDGQVRVSEILETGYVENTKRLAP 230 (559)
T ss_pred ccCccceEEeehhhc-cC-cccccccccccchhhhhcc----CC--CCCcCceeccccCceeeeeeccccceecceeccc
Confidence 589999999999998 53 2333445899999999998 43 556789999999999998776544433 22334
Q ss_pred cccceeeeEeeecCC-eEEecCCceeEEEEE-----------ecccccc---ceEEEEecCCCCCCCCCcccCCCceeEE
Q 048511 79 YRKEVISLASYIEGP-VLVAGSSSYQVSVES-----------LLIGHED---WVYSVQWEPPSTAPSDGVSCQQPSSILS 143 (351)
Q Consensus 79 ~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~-----------~~~~h~~---~v~~l~~~p~~~~~~~~~~~~~~~~l~s 143 (351)
+...+..++.-|+.. .|.+++.+..+.-+. ....+.. ..+.++..| .+... +++
T Consensus 231 h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P-----~nt~~------faV 299 (559)
T KOG1334|consen 231 HEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP-----RNTNE------FAV 299 (559)
T ss_pred ccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC-----CCccc------ccc
Confidence 466677777777543 455555555443221 1222333 467888887 45556 999
Q ss_pred eecCCeEEEEeccCCCcc----eEEEEEecc-ccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc-------C
Q 048511 144 ASMDKTMMIWQPEKTTGI----WMNVVTVGE-LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID-------N 211 (351)
Q Consensus 144 ~~~d~~i~iwd~~~~~~~----~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-------~ 211 (351)
++.|-.+++||.+..... .+..+.... .......|++++|+.++.-|+++..|-.|++|.-..+.-. .
T Consensus 300 gG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~ 379 (559)
T KOG1334|consen 300 GGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPR 379 (559)
T ss_pred CChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcch
Confidence 999999999998863222 112222111 1133456999999988888888899999999954322110 0
Q ss_pred cccccc-cccccc--cEEEEEe-ecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCC
Q 048511 212 WQPQKV-PSGHFA--AVMDISW-SRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKG 287 (351)
Q Consensus 212 ~~~~~~-~~~~~~--~v~~v~~-sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 287 (351)
...+.. +++|.. .|.++-| -|...|+++|+.-|.|.||+-.+++ .+.-+.+...-|+|+.-+| -
T Consensus 380 ~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e----------ii~~MegDr~VVNCLEpHP--~ 447 (559)
T KOG1334|consen 380 EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE----------IIRFMEGDRHVVNCLEPHP--H 447 (559)
T ss_pred hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhH----------HHHHhhcccceEeccCCCC--C
Confidence 022233 677764 4666654 5788999999999999999988776 5555556666899999998 6
Q ss_pred CcEEEEecCCCeEEEEec
Q 048511 288 NHRFVSGADEKVARVFEA 305 (351)
Q Consensus 288 ~~~l~s~~~dg~v~vw~~ 305 (351)
--.||+.|-|.-|+||..
T Consensus 448 ~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 448 LPVLASSGIDHDVKIWTP 465 (559)
T ss_pred CchhhccCCccceeeecC
Confidence 789999999999999986
No 222
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=5.4e-13 Score=118.37 Aligned_cols=224 Identities=12% Similarity=0.037 Sum_probs=143.7
Q ss_pred ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC---CCcEEEEecCCCcccceeecccccc
Q 048511 6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ---DKVIRIWKLALRGSSANTQSTYRKE 82 (351)
Q Consensus 6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~---dg~i~iwd~~~~~~~~~~~~~~~~~ 82 (351)
..|.+||.+. ... ..+..+...+.+.+|+ |+|+.|+..+. +..|.+|++.+++....
T Consensus 179 ~~l~~~d~dg-~~~---~~lt~~~~~~~~p~wS--------PDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-------- 238 (429)
T PRK03629 179 YELRVSDYDG-YNQ---FVVHRSPQPLMSPAWS--------PDGSKLAYVTFESGRSALVIQTLANGAVRQV-------- 238 (429)
T ss_pred eeEEEEcCCC-CCC---EEeecCCCceeeeEEc--------CCCCEEEEEEecCCCcEEEEEECCCCCeEEc--------
Confidence 4688888876 322 2334466789999999 88998886542 35688899876542211
Q ss_pred eeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEe-ecCC--eEEEEeccCCC
Q 048511 83 VISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSA-SMDK--TMMIWQPEKTT 159 (351)
Q Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~-~~d~--~i~iwd~~~~~ 159 (351)
..+.++ +..+.|+ |||+. |+.. +.++ .|.+||+.+
T Consensus 239 -------------------------~~~~~~---~~~~~~S------PDG~~------La~~~~~~g~~~I~~~d~~t-- 276 (429)
T PRK03629 239 -------------------------ASFPRH---NGAPAFS------PDGSK------LAFALSKTGSLNLYVMDLAS-- 276 (429)
T ss_pred -------------------------cCCCCC---cCCeEEC------CCCCE------EEEEEcCCCCcEEEEEECCC--
Confidence 112222 3457899 78887 6654 4444 588899987
Q ss_pred cceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-Ce--EEEEEcccCcccCcccccccccccccEEEEEeecCCCE
Q 048511 160 GIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-GA--FHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDY 236 (351)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g~--i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 236 (351)
+.... +. .....+....|+|+|+.|+..+.+ +. |+++|+.++. ...+...........|+|+|++
T Consensus 277 g~~~~-lt-----~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~------~~~lt~~~~~~~~~~~SpDG~~ 344 (429)
T PRK03629 277 GQIRQ-VT-----DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA------PQRITWEGSQNQDADVSSDGKF 344 (429)
T ss_pred CCEEE-cc-----CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC------eEEeecCCCCccCEEECCCCCE
Confidence 44322 21 223456789999999988776654 44 4444555543 2223333344567899999999
Q ss_pred EEEEeCC---CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCe---EEEEecCchhh
Q 048511 237 LLSVSHD---QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKV---ARVFEAPLSFL 310 (351)
Q Consensus 237 l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~---v~vw~~~~~~~ 310 (351)
|+..+.+ ..|.+||+.++.. ..+... .......|+| ||.+|+..+.++. +.++++++...
T Consensus 345 Ia~~~~~~g~~~I~~~dl~~g~~--------~~Lt~~----~~~~~p~~Sp--DG~~i~~~s~~~~~~~l~~~~~~G~~~ 410 (429)
T PRK03629 345 MVMVSSNGGQQHIAKQDLATGGV--------QVLTDT----FLDETPSIAP--NGTMVIYSSSQGMGSVLNLVSTDGRFK 410 (429)
T ss_pred EEEEEccCCCceEEEEECCCCCe--------EEeCCC----CCCCCceECC--CCCEEEEEEcCCCceEEEEEECCCCCe
Confidence 8776543 3588899877651 222211 1234678999 9999998887763 77888888877
Q ss_pred hceeecc
Q 048511 311 KTLNHAT 317 (351)
Q Consensus 311 ~~~~~~~ 317 (351)
+.+..+.
T Consensus 411 ~~l~~~~ 417 (429)
T PRK03629 411 ARLPATD 417 (429)
T ss_pred EECccCC
Confidence 7776543
No 223
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.57 E-value=9.3e-13 Score=103.78 Aligned_cols=267 Identities=13% Similarity=0.092 Sum_probs=176.2
Q ss_pred CCceEEEEEccCCCceEEEEeee-ecCCceeEEEeeCCcccCCCCCcc-EEEEeeCCCcEEEEecCCCcccceeeccc--
Q 048511 4 LDNKIHLYRGQRTGKFVRACELK-GHTDWIRSLDFSLPVCTSGEAISI-LLVSSSQDKVIRIWKLALRGSSANTQSTY-- 79 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~~-- 79 (351)
.-|.+.+|++.. .+...+.+++ --++.+..|.|.... .++. .|+-+-.+|.|.++..........+....
T Consensus 44 R~Gkl~Lys~~d-~~~~~l~~~q~~dts~~~dm~w~~~~-----~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ 117 (339)
T KOG0280|consen 44 RSGKLHLYSLED-MKLSPLDTLQCTDTSTEFDMLWRIRE-----TDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSK 117 (339)
T ss_pred eccceEEEeecc-cccCccceeeeecccccceeeeeecc-----CCccceeeeccccceEEEEeeccceeeeeecccchh
Confidence 357889999887 4443333333 234567888887321 2344 56667788999999876544332221111
Q ss_pred ---ccceeeeEeeecCCeEEecCCceeEE----------EEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec
Q 048511 80 ---RKEVISLASYIEGPVLVAGSSSYQVS----------VESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM 146 (351)
Q Consensus 80 ---~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~ 146 (351)
.....++.|++.+..++++..++.+. ..+..+.|.-+.+..+|+. .+.++ +.+|+.
T Consensus 118 ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~-----~~pnl------vytGgD 186 (339)
T KOG0280|consen 118 KISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSD-----KEPNL------VYTGGD 186 (339)
T ss_pred hhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeeccc-----CCCce------EEecCC
Confidence 11356777888888888877666553 2336788999999999995 33355 999999
Q ss_pred CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccE
Q 048511 147 DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAV 225 (351)
Q Consensus 147 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v 225 (351)
|+.+..||++.. +.++.. +...|...|.+|.-+| .+.++++|+.|..|++||.++-. +++..-. -.+.|
T Consensus 187 D~~l~~~D~R~p-~~~i~~----n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~----kPl~~~~-v~GGV 256 (339)
T KOG0280|consen 187 DGSLSCWDIRIP-KTFIWH----NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG----KPLFKAK-VGGGV 256 (339)
T ss_pred CceEEEEEecCC-cceeee----cceeeecceEEEecCCCCCceEEEeccccceeeeehhccc----CccccCc-cccce
Confidence 999999999942 333332 2236888899998876 57799999999999999999653 4454433 34789
Q ss_pred EEEEeecCC-CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEec-CCCeEE-E
Q 048511 226 MDISWSRSS-DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGA-DEKVAR-V 302 (351)
Q Consensus 226 ~~v~~sp~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~dg~v~-v 302 (351)
+.++++|.- ..|+.++.-+-.+|-++...... .-......+.|.+-+..-.|.. ....|++++ .|..++ +
T Consensus 257 WRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e-----~~~~~~s~~~hdSl~YG~DWd~--~~~~lATCsFYDk~~~~~ 329 (339)
T KOG0280|consen 257 WRIKHHPEIFHRLLAACMHNGAKILDSSDKVLE-----FQIVLPSDKIHDSLCYGGDWDS--KDSFLATCSFYDKKIRQL 329 (339)
T ss_pred EEEEecchhhhHHHHHHHhcCceEEEecccccc-----hheeeeccccccceeecccccc--ccceeeeeeccccceeee
Confidence 999999943 23333445555677777666521 1113344556766677777755 456788876 566655 6
Q ss_pred Ee
Q 048511 303 FE 304 (351)
Q Consensus 303 w~ 304 (351)
|-
T Consensus 330 Wl 331 (339)
T KOG0280|consen 330 WL 331 (339)
T ss_pred ee
Confidence 64
No 224
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=8.8e-13 Score=117.50 Aligned_cols=221 Identities=14% Similarity=0.041 Sum_probs=140.8
Q ss_pred ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCC---CcEEEEecCCCcccceeecccccc
Q 048511 6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQD---KVIRIWKLALRGSSANTQSTYRKE 82 (351)
Q Consensus 6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~~~~~~ 82 (351)
..|.+||.+. .. ...+..|...+.+.+|+ |+++.|+..+.+ ..|.+||+.++....
T Consensus 184 ~~l~i~D~~g-~~---~~~lt~~~~~v~~p~wS--------pDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------- 242 (433)
T PRK04922 184 YALQVADSDG-YN---PQTILRSAEPILSPAWS--------PDGKKLAYVSFERGRSAIYVQDLATGQREL--------- 242 (433)
T ss_pred EEEEEECCCC-CC---ceEeecCCCccccccCC--------CCCCEEEEEecCCCCcEEEEEECCCCCEEE---------
Confidence 4688899876 32 23455577789999999 889999887643 469999997654321
Q ss_pred eeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeE-EeecCC--eEEEEeccCCC
Q 048511 83 VISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSIL-SASMDK--TMMIWQPEKTT 159 (351)
Q Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~-s~~~d~--~i~iwd~~~~~ 159 (351)
+........++.|+ +|++. |+ +.+.++ .|.+||+.+
T Consensus 243 ---------------------------l~~~~g~~~~~~~S------pDG~~------l~~~~s~~g~~~Iy~~d~~~-- 281 (433)
T PRK04922 243 ---------------------------VASFRGINGAPSFS------PDGRR------LALTLSRDGNPEIYVMDLGS-- 281 (433)
T ss_pred ---------------------------eccCCCCccCceEC------CCCCE------EEEEEeCCCCceEEEEECCC--
Confidence 11122334567899 67876 54 555555 599999987
Q ss_pred cceEEEEEeccccccccceEEEEEcCCCCEEEEEee-CCe--EEEEEcccCcccCcccccccccccccEEEEEeecCCCE
Q 048511 160 GIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY-GGA--FHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDY 236 (351)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~--i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 236 (351)
+... .+. .+.......+|+|+++.|+..+. ++. |+++|+.+++. ..+..+.......+|+|+|++
T Consensus 282 g~~~-~lt-----~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~------~~lt~~g~~~~~~~~SpDG~~ 349 (433)
T PRK04922 282 RQLT-RLT-----NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA------ERLTFQGNYNARASVSPDGKK 349 (433)
T ss_pred CCeE-ECc-----cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe------EEeecCCCCccCEEECCCCCE
Confidence 4432 222 23334467899999998887663 444 66666655431 122222233456899999999
Q ss_pred EEEEeCCC---cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC---CeEEEEecCchhh
Q 048511 237 LLSVSHDQ---TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE---KVARVFEAPLSFL 310 (351)
Q Consensus 237 l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---g~v~vw~~~~~~~ 310 (351)
|+..+.++ .|.+||+.++.. ..+. +........|+| |+++|+..+.+ +.+.++++.+...
T Consensus 350 Ia~~~~~~~~~~I~v~d~~~g~~--------~~Lt----~~~~~~~p~~sp--dG~~i~~~s~~~g~~~L~~~~~~g~~~ 415 (433)
T PRK04922 350 IAMVHGSGGQYRIAVMDLSTGSV--------RTLT----PGSLDESPSFAP--NGSMVLYATREGGRGVLAAVSTDGRVR 415 (433)
T ss_pred EEEEECCCCceeEEEEECCCCCe--------EECC----CCCCCCCceECC--CCCEEEEEEecCCceEEEEEECCCCce
Confidence 88765433 699999877651 1221 122244678999 89887766643 4677888877655
Q ss_pred hcee
Q 048511 311 KTLN 314 (351)
Q Consensus 311 ~~~~ 314 (351)
+.+.
T Consensus 416 ~~l~ 419 (433)
T PRK04922 416 QRLV 419 (433)
T ss_pred EEcc
Confidence 5554
No 225
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=6.8e-13 Score=113.49 Aligned_cols=167 Identities=10% Similarity=0.190 Sum_probs=122.4
Q ss_pred EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecc-ccccc-----cceEEE
Q 048511 108 SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGE-LSHSA-----LGFYGG 181 (351)
Q Consensus 108 ~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~-----~~i~~i 181 (351)
..+......++++..+ +...+ |++|+.+|.|-.||.+. ...+..+.... ...+. ..|+++
T Consensus 169 ~P~~~~~~~lN~v~in------~~hgL------la~Gt~~g~VEfwDpR~--ksrv~~l~~~~~v~s~pg~~~~~svTal 234 (703)
T KOG2321|consen 169 NPFETDSGELNVVSIN------EEHGL------LACGTEDGVVEFWDPRD--KSRVGTLDAASSVNSHPGGDAAPSVTAL 234 (703)
T ss_pred cccccccccceeeeec------Cccce------EEecccCceEEEecchh--hhhheeeecccccCCCccccccCcceEE
Confidence 3455556789999999 45556 89999999999999998 44444443221 11222 249999
Q ss_pred EEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC--CCEEEEEeCCCcEEEEcCCCcccccc
Q 048511 182 HWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS--SDYLLSVSHDQTTRVFAPWKNVASLM 259 (351)
Q Consensus 182 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~--~~~l~s~~~dg~i~vwd~~~~~~~~~ 259 (351)
.|+.+|-.+++|..+|.+.|||+++.+ ..+..-.+..-+|..+.|.+. +..+++. ....++|||-.+++
T Consensus 235 ~F~d~gL~~aVGts~G~v~iyDLRa~~----pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk---- 305 (703)
T KOG2321|consen 235 KFRDDGLHVAVGTSTGSVLIYDLRASK----PLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGK---- 305 (703)
T ss_pred EecCCceeEEeeccCCcEEEEEcccCC----ceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCC----
Confidence 999999999999999999999999974 222233334557889999875 4456654 45789999998887
Q ss_pred CccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 260 GENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
...... ....++.+++.| ++.+++++-+++.+..|=++
T Consensus 306 ------~~asiE-pt~~lND~C~~p--~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 306 ------PMASIE-PTSDLNDFCFVP--GSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred ------ceeecc-ccCCcCceeeec--CCceEEEecCCCcceeEEcc
Confidence 333332 334589999999 89999999999988877654
No 226
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.54 E-value=3.2e-13 Score=122.86 Aligned_cols=145 Identities=19% Similarity=0.216 Sum_probs=119.2
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG 220 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 220 (351)
+++|+.-+.|.+|+....+ ... . ..+|.+.|.++.++.+|+++++.+.|.++++|++++.+ ......-+
T Consensus 148 i~~gsv~~~iivW~~~~dn-~p~-~-----l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~----~~~~~~fg 216 (967)
T KOG0974|consen 148 IASGSVFGEIIVWKPHEDN-KPI-R-----LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSRE----VLGCTGFG 216 (967)
T ss_pred EEeccccccEEEEeccccC-Ccc-e-----ecccCCceEEEEEccCCcEEEEEecCcceeeeeccccc----ccCccccc
Confidence 9999999999999998422 222 2 34899999999999999999999999999999999975 33446678
Q ss_pred ccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccc-cceeEEEEeeeCCCcEEEEecCCCe
Q 048511 221 HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHG-HDINCVTIIQGKGNHRFVSGADEKV 299 (351)
Q Consensus 221 ~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~s~~~dg~ 299 (351)
|...|+.++|.|+ .++|++.|.+.++|+..... +..+..|. ..|+.++..+ +...+++++.|+.
T Consensus 217 HsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~-----------l~~y~~h~g~~iw~~~~~~--~~~~~vT~g~Ds~ 281 (967)
T KOG0974|consen 217 HSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ-----------LEVYDEHSGKGIWKIAVPI--GVIIKVTGGNDST 281 (967)
T ss_pred ccceeEEEEeccc--eeEEeccceEEEEEecccce-----------ehhhhhhhhcceeEEEEcC--CceEEEeeccCcc
Confidence 9999999999999 89999999999999664432 33555554 4499999998 8889999999999
Q ss_pred EEEEecCchhhh
Q 048511 300 ARVFEAPLSFLK 311 (351)
Q Consensus 300 v~vw~~~~~~~~ 311 (351)
+++|++.+....
T Consensus 282 lk~~~l~~r~~e 293 (967)
T KOG0974|consen 282 LKLWDLNGRGLE 293 (967)
T ss_pred hhhhhhhccccc
Confidence 999998754433
No 227
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=2.6e-12 Score=114.67 Aligned_cols=220 Identities=12% Similarity=0.085 Sum_probs=143.0
Q ss_pred ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC---CCcEEEEecCCCcccceeecccccc
Q 048511 6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ---DKVIRIWKLALRGSSANTQSTYRKE 82 (351)
Q Consensus 6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~---dg~i~iwd~~~~~~~~~~~~~~~~~ 82 (351)
..|.+||.+. .. ...+..|...+.+.+|+ |+|+.|+..+. +..|.+||+.++....
T Consensus 182 ~~l~~~d~dg-~~---~~~lt~~~~~v~~p~wS--------pDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------- 240 (435)
T PRK05137 182 KRLAIMDQDG-AN---VRYLTDGSSLVLTPRFS--------PNRQEITYMSYANGRPRVYLLDLETGQREL--------- 240 (435)
T ss_pred eEEEEECCCC-CC---cEEEecCCCCeEeeEEC--------CCCCEEEEEEecCCCCEEEEEECCCCcEEE---------
Confidence 4788888866 32 33455678899999999 88998887764 4679999997764321
Q ss_pred eeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeE-EeecCCe--EEEEeccCCC
Q 048511 83 VISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSIL-SASMDKT--MMIWQPEKTT 159 (351)
Q Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~-s~~~d~~--i~iwd~~~~~ 159 (351)
+..+.+.+....|+ |||+. |+ +.+.++. |.+||+..
T Consensus 241 ---------------------------l~~~~g~~~~~~~S------PDG~~------la~~~~~~g~~~Iy~~d~~~-- 279 (435)
T PRK05137 241 ---------------------------VGNFPGMTFAPRFS------PDGRK------VVMSLSQGGNTDIYTMDLRS-- 279 (435)
T ss_pred ---------------------------eecCCCcccCcEEC------CCCCE------EEEEEecCCCceEEEEECCC--
Confidence 12234456778999 78876 54 5555655 66778776
Q ss_pred cceEEEEEeccccccccceEEEEEcCCCCEEEEEee-CC--eEEEEEcccCcccCcccccccccccccEEEEEeecCCCE
Q 048511 160 GIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY-GG--AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDY 236 (351)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 236 (351)
+... .+. .+........|+|+|+.|+..+. +| .|+++|+.++. ...+..+...+....|+|+|++
T Consensus 280 ~~~~-~Lt-----~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~------~~~lt~~~~~~~~~~~SpdG~~ 347 (435)
T PRK05137 280 GTTT-RLT-----DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN------PRRISFGGGRYSTPVWSPRGDL 347 (435)
T ss_pred CceE-Ecc-----CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC------eEEeecCCCcccCeEECCCCCE
Confidence 4332 222 33344567899999998887663 33 68888877653 2233323445667889999999
Q ss_pred EEEEeCC---CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC------CeEEEEecCc
Q 048511 237 LLSVSHD---QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE------KVARVFEAPL 307 (351)
Q Consensus 237 l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d------g~v~vw~~~~ 307 (351)
|+..+.+ ..|.+||+..+.. ..+. ....+....|+| |++.|+..+.+ ..+.++++.+
T Consensus 348 ia~~~~~~~~~~i~~~d~~~~~~--------~~lt----~~~~~~~p~~sp--DG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 348 IAFTKQGGGQFSIGVMKPDGSGE--------RILT----SGFLVEGPTWAP--NGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred EEEEEcCCCceEEEEEECCCCce--------Eecc----CCCCCCCCeECC--CCCEEEEEEccCCCCCcceEEEEECCC
Confidence 8876543 3688888754431 1221 122367789999 88887765432 3577778776
Q ss_pred hhhhce
Q 048511 308 SFLKTL 313 (351)
Q Consensus 308 ~~~~~~ 313 (351)
...+.+
T Consensus 414 ~~~~~l 419 (435)
T PRK05137 414 RNEREV 419 (435)
T ss_pred CceEEc
Confidence 544444
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=3.5e-12 Score=113.35 Aligned_cols=223 Identities=16% Similarity=0.099 Sum_probs=136.8
Q ss_pred ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCC---CcEEEEecCCCcccceeecccccc
Q 048511 6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQD---KVIRIWKLALRGSSANTQSTYRKE 82 (351)
Q Consensus 6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~~~~~~ 82 (351)
..|.++|.+. . ....+..+...+.+.+|+ |+++.|+..+.+ ..|.+||+.+++...
T Consensus 176 ~~L~~~D~dG-~---~~~~l~~~~~~v~~p~wS--------PDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------- 234 (427)
T PRK02889 176 YQLQISDADG-Q---NAQSALSSPEPIISPAWS--------PDGTKLAYVSFESKKPVVYVHDLATGRRRV--------- 234 (427)
T ss_pred cEEEEECCCC-C---CceEeccCCCCcccceEc--------CCCCEEEEEEccCCCcEEEEEECCCCCEEE---------
Confidence 4566677654 2 223444677889999999 889998877643 359999998764321
Q ss_pred eeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeE-EeecCCeEEEEeccCCCcc
Q 048511 83 VISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSIL-SASMDKTMMIWQPEKTTGI 161 (351)
Q Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~ 161 (351)
+....+.+....|+ ||++. |+ +.+.++...||.+....+.
T Consensus 235 ---------------------------l~~~~g~~~~~~~S------PDG~~------la~~~~~~g~~~Iy~~d~~~~~ 275 (427)
T PRK02889 235 ---------------------------VANFKGSNSAPAWS------PDGRT------LAVALSRDGNSQIYTVNADGSG 275 (427)
T ss_pred ---------------------------eecCCCCccceEEC------CCCCE------EEEEEccCCCceEEEEECCCCC
Confidence 11122345578999 78876 65 5677888777766432132
Q ss_pred eEEEEEeccccccccceEEEEEcCCCCEEEEEee-CCeEEEEEcc--cCcccCcccccccccccccEEEEEeecCCCEEE
Q 048511 162 WMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY-GGAFHLWRNV--GVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLL 238 (351)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~~~d~~--~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~ 238 (351)
...+. .+........|+|||+.|+..+. ++...+|.+. ++. ...+...........|+|+|++|+
T Consensus 276 -~~~lt-----~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~------~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 276 -LRRLT-----QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA------AQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred -cEECC-----CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc------eEEEecCCCCcCceEECCCCCEEE
Confidence 22222 23334566789999998876554 4666666654 332 111111222344678999999998
Q ss_pred EEeCCC---cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCC---eEEEEecCchhhhc
Q 048511 239 SVSHDQ---TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEK---VARVFEAPLSFLKT 312 (351)
Q Consensus 239 s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg---~v~vw~~~~~~~~~ 312 (351)
..+.++ .|.+||+.++.. +.+.. ........|+| |++.|+..+.++ .+.+.++.+...+.
T Consensus 344 ~~s~~~g~~~I~v~d~~~g~~--------~~lt~----~~~~~~p~~sp--dg~~l~~~~~~~g~~~l~~~~~~g~~~~~ 409 (427)
T PRK02889 344 YISRVGGAFKLYVQDLATGQV--------TALTD----TTRDESPSFAP--NGRYILYATQQGGRSVLAAVSSDGRIKQR 409 (427)
T ss_pred EEEccCCcEEEEEEECCCCCe--------EEccC----CCCccCceECC--CCCEEEEEEecCCCEEEEEEECCCCceEE
Confidence 776554 699999977651 12211 12245779999 888887766443 35555565655544
Q ss_pred ee
Q 048511 313 LN 314 (351)
Q Consensus 313 ~~ 314 (351)
+.
T Consensus 410 l~ 411 (427)
T PRK02889 410 LS 411 (427)
T ss_pred ee
Confidence 43
No 229
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.51 E-value=2.1e-10 Score=99.06 Aligned_cols=270 Identities=14% Similarity=0.121 Sum_probs=167.0
Q ss_pred CceEEEEEc--cCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC----CCcEEEEecCCC-cccceeec
Q 048511 5 DNKIHLYRG--QRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ----DKVIRIWKLALR-GSSANTQS 77 (351)
Q Consensus 5 dg~i~vw~~--~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~----dg~i~iwd~~~~-~~~~~~~~ 77 (351)
.+.|++|++ ++ +++..+.... -......|+++ +++++|+++.. ++.|..|++... ..+..+..
T Consensus 12 ~~gI~~~~~d~~~-g~l~~~~~~~-~~~~Ps~l~~~--------~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 12 GGGIYVFRFDEET-GTLTLVQTVA-EGENPSWLAVS--------PDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp STEEEEEEEETTT-TEEEEEEEEE-ESSSECCEEE---------TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred CCcEEEEEEcCCC-CCceEeeeec-CCCCCceEEEE--------eCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 378999988 44 7776666544 34556778999 78889988866 578999998875 33322222
Q ss_pred c--cccceeeeEeeecCCeEEecCC-ceeEEEEEe-----------cc-----------ccccceEEEEecCCCCCCCCC
Q 048511 78 T--YRKEVISLASYIEGPVLVAGSS-SYQVSVESL-----------LI-----------GHEDWVYSVQWEPPSTAPSDG 132 (351)
Q Consensus 78 ~--~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~-----------~~-----------~h~~~v~~l~~~p~~~~~~~~ 132 (351)
. .......++.+++++.++++.. .+.+.++.. .. .......++.++ |++
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~------pdg 155 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS------PDG 155 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-------TTS
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEEC------CCC
Confidence 1 3456678889999998888542 222221111 11 112346788999 788
Q ss_pred cccCCCceeEEee-cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-eCCeEEEEEcc--cCc
Q 048511 133 VSCQQPSSILSAS-MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNV--GVD 208 (351)
Q Consensus 133 ~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~--~~~ 208 (351)
++ +++.. ....|.+|++....+.......+ .. ......+.++|+|+++++++.. .++.|.+|++. .+.
T Consensus 156 ~~------v~v~dlG~D~v~~~~~~~~~~~l~~~~~~-~~-~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~ 227 (345)
T PF10282_consen 156 RF------VYVPDLGADRVYVYDIDDDTGKLTPVDSI-KV-PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGS 227 (345)
T ss_dssp SE------EEEEETTTTEEEEEEE-TTS-TEEEEEEE-EC-STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred CE------EEEEecCCCEEEEEEEeCCCceEEEeecc-cc-ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCc
Confidence 87 66543 34579999998744333221111 11 3345678999999999887665 56899999998 332
Q ss_pred ccCccccccccc---ccccEEEEEeecCCCEEEEEe-CCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEee
Q 048511 209 IDNWQPQKVPSG---HFAAVMDISWSRSSDYLLSVS-HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQ 284 (351)
Q Consensus 209 ~~~~~~~~~~~~---~~~~v~~v~~sp~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 284 (351)
....+.+..+.. .......|.++|||++|+++. ....|.+|++..... .+..+......+...+.++++|
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g------~l~~~~~~~~~G~~Pr~~~~s~ 301 (345)
T PF10282_consen 228 LTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG------TLTLVQTVPTGGKFPRHFAFSP 301 (345)
T ss_dssp EEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT------TEEEEEEEEESSSSEEEEEE-T
T ss_pred eeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC------ceEEEEEEeCCCCCccEEEEeC
Confidence 111111222211 112578899999999987655 467899999943321 2233433333445589999999
Q ss_pred eCCCcEEEEec-CCCeEEEEecC
Q 048511 285 GKGNHRFVSGA-DEKVARVFEAP 306 (351)
Q Consensus 285 ~~~~~~l~s~~-~dg~v~vw~~~ 306 (351)
++++|+++. .++.|.+|+++
T Consensus 302 --~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 302 --DGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp --TSSEEEEEETTTTEEEEEEEE
T ss_pred --CCCEEEEEecCCCeEEEEEEe
Confidence 888887665 77899999874
No 230
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.51 E-value=5.2e-14 Score=117.22 Aligned_cols=187 Identities=9% Similarity=0.060 Sum_probs=155.6
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEeccc-------cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIG-------HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW 153 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 153 (351)
-....+.++.+|+.++.+++.+.+........ -...|.++.|. .+.++ ||++ ....+.||
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~L------Hneq~------~AVA-QK~y~yvY 196 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFL------HNEQF------FAVA-QKKYVYVY 196 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhh------cchHH------HHhh-hhceEEEe
Confidence 35678889999999999999988755443222 13468889998 66666 6665 67789999
Q ss_pred eccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC
Q 048511 154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS 233 (351)
Q Consensus 154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 233 (351)
|-. |..++.++ ....+..+.|-|..-+|++++..|.++.-|+.++ +.+..+....+.+..++-+|-
T Consensus 197 D~~---GtElHClk------~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G-----klVa~~~t~~G~~~vm~qNP~ 262 (545)
T KOG1272|consen 197 DNN---GTELHCLK------RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTG-----KLVASIRTGAGRTDVMKQNPY 262 (545)
T ss_pred cCC---CcEEeehh------hcCchhhhcccchhheeeecccCCceEEEeechh-----hhhHHHHccCCccchhhcCCc
Confidence 976 55555554 2346889999999989999999999999999998 568888878888999999998
Q ss_pred CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 234 SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 234 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
...+-+|...|+|.+|...... ++..+..|.++|.++++.+ +|+++||.+.|..++|||+.
T Consensus 263 NaVih~GhsnGtVSlWSP~ske----------PLvKiLcH~g~V~siAv~~--~G~YMaTtG~Dr~~kIWDlR 323 (545)
T KOG1272|consen 263 NAVIHLGHSNGTVSLWSPNSKE----------PLVKILCHRGPVSSIAVDR--GGRYMATTGLDRKVKIWDLR 323 (545)
T ss_pred cceEEEcCCCceEEecCCCCcc----------hHHHHHhcCCCcceEEECC--CCcEEeecccccceeEeeec
Confidence 8889999999999999998776 7777789999999999999 99999999999999999987
No 231
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.50 E-value=3.7e-12 Score=100.01 Aligned_cols=112 Identities=21% Similarity=0.417 Sum_probs=84.4
Q ss_pred ccceEEEEecCCCCCCCCCcccCCCceeEE--eecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEE
Q 048511 114 EDWVYSVQWEPPSTAPSDGVSCQQPSSILS--ASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSIL 191 (351)
Q Consensus 114 ~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 191 (351)
.++|.+++|+ |+++. |++ |..++.|.+||++ +..+..+. ...+..+.|+|+|++++
T Consensus 59 ~~~I~~~~Ws------P~g~~------favi~g~~~~~v~lyd~~---~~~i~~~~-------~~~~n~i~wsP~G~~l~ 116 (194)
T PF08662_consen 59 EGPIHDVAWS------PNGNE------FAVIYGSMPAKVTLYDVK---GKKIFSFG-------TQPRNTISWSPDGRFLV 116 (194)
T ss_pred CCceEEEEEC------cCCCE------EEEEEccCCcccEEEcCc---ccEeEeec-------CCCceEEEECCCCCEEE
Confidence 4579999999 56666 554 4467899999996 33333332 34677899999999999
Q ss_pred EEeeC---CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC------CCcEEEEcCCCc
Q 048511 192 AHGYG---GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH------DQTTRVFAPWKN 254 (351)
Q Consensus 192 ~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~------dg~i~vwd~~~~ 254 (351)
+++.+ |.|.+||.++. +.+.... |. .++.++|+|+|++|+++.. |+.++||++...
T Consensus 117 ~~g~~n~~G~l~~wd~~~~-----~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 117 LAGFGNLNGDLEFWDVRKK-----KKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEEccCCCcEEEEEECCCC-----EEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 98754 67999999975 4455544 33 4789999999999998864 788999998543
No 232
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=6.4e-11 Score=96.52 Aligned_cols=269 Identities=12% Similarity=0.115 Sum_probs=174.3
Q ss_pred CceEEEEEccC-CCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC---CCcEEEEecCCC--cccc-eeec
Q 048511 5 DNKIHLYRGQR-TGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ---DKVIRIWKLALR--GSSA-NTQS 77 (351)
Q Consensus 5 dg~i~vw~~~~-~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~---dg~i~iwd~~~~--~~~~-~~~~ 77 (351)
+.-|++|++++ .+++.. ..+-.+.+.++-|+|+ +++++|.++-. +|.|..|.++.. .... ....
T Consensus 15 s~gI~v~~ld~~~g~l~~-~~~v~~~~nptyl~~~--------~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~ 85 (346)
T COG2706 15 SQGIYVFNLDTKTGELSL-LQLVAELGNPTYLAVN--------PDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT 85 (346)
T ss_pred CCceEEEEEeCcccccch-hhhccccCCCceEEEC--------CCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc
Confidence 56799999884 244333 3344578889999999 88989998854 577888888753 3221 1112
Q ss_pred ccccceeeeEeeecCCeEEecCCc------------eeEEEEEeccccccc----------eEEEEecCCCCCCCCCccc
Q 048511 78 TYRKEVISLASYIEGPVLVAGSSS------------YQVSVESLLIGHEDW----------VYSVQWEPPSTAPSDGVSC 135 (351)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~~~~~~h~~~----------v~~l~~~p~~~~~~~~~~~ 135 (351)
....+...++.+++|++++++.-. +.+........|.+. +....+. |++++
T Consensus 86 ~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~t------P~~~~- 158 (346)
T COG2706 86 LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFT------PDGRY- 158 (346)
T ss_pred cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeC------CCCCE-
Confidence 223445888999999998886422 222111112224444 6777788 78887
Q ss_pred CCCceeEEeec-CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-eCCeEEEEEcccC--cccC
Q 048511 136 QQPSSILSASM-DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNVGV--DIDN 211 (351)
Q Consensus 136 ~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~~--~~~~ 211 (351)
|++..- --.|.+|++.. +.....-.. .. .....-+.|.|+|++++.++.+ -+++|.+|..+.. +...
T Consensus 159 -----l~v~DLG~Dri~~y~~~d--g~L~~~~~~-~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~ 229 (346)
T COG2706 159 -----LVVPDLGTDRIFLYDLDD--GKLTPADPA-EV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEE 229 (346)
T ss_pred -----EEEeecCCceEEEEEccc--Ccccccccc-cc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEE
Confidence 777643 22589999996 443322111 11 3445678999999999887665 5899999998773 3222
Q ss_pred ccccccccc---ccccEEEEEeecCCCEEEEEeC-CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCC
Q 048511 212 WQPQKVPSG---HFAAVMDISWSRSSDYLLSVSH-DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKG 287 (351)
Q Consensus 212 ~~~~~~~~~---~~~~v~~v~~sp~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 287 (351)
.+.+.++.. -.....+|..+|||++|.++.. ...|.+|.+..... .+..+.....++...+.+.|++ +
T Consensus 230 lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g------~L~~~~~~~teg~~PR~F~i~~--~ 301 (346)
T COG2706 230 LQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGG------KLELVGITPTEGQFPRDFNINP--S 301 (346)
T ss_pred eeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCC------EEEEEEEeccCCcCCccceeCC--C
Confidence 233333221 2345678999999999987643 45888888865542 2334444445666678999999 7
Q ss_pred CcEEEEecC-CCeEEEEecC
Q 048511 288 NHRFVSGAD-EKVARVFEAP 306 (351)
Q Consensus 288 ~~~l~s~~~-dg~v~vw~~~ 306 (351)
+++|+++.. +..|.+|.++
T Consensus 302 g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 302 GRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCEEEEEccCCCcEEEEEEc
Confidence 888877774 5579999876
No 233
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.49 E-value=2.6e-12 Score=110.44 Aligned_cols=210 Identities=13% Similarity=0.030 Sum_probs=152.0
Q ss_pred CCccEEEEeeCCCcEEEEecCCCcccceeeccc--ccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecC
Q 048511 47 AISILLVSSSQDKVIRIWKLALRGSSANTQSTY--RKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEP 124 (351)
Q Consensus 47 ~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p 124 (351)
+...++|....||.+|+|+...++..+++.... .+...+..|. |.+.... ....++.+-
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~-----L~~~~s~-------------~k~~~~~~~- 63 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG-----LSADYSP-------------MKWLSLEKA- 63 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE-----EEeccch-------------HHHHhHHHH-
Confidence 557899999999999999999877655443221 1222222222 1111111 011111111
Q ss_pred CCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEc
Q 048511 125 PSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRN 204 (351)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~ 204 (351)
.. .+.+..+++-|...|.|.+|++.. ++....+. ...|...|.++.++.+-.+|.+++.|..+..|+.
T Consensus 64 -----~~--~s~~t~~lvlgt~~g~v~~ys~~~--g~it~~~s---t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~ 131 (541)
T KOG4547|consen 64 -----KK--ASLDTSMLVLGTPQGSVLLYSVAG--GEITAKLS---TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILE 131 (541)
T ss_pred -----hh--ccCCceEEEeecCCccEEEEEecC--CeEEEEEe---cCCCCCcceeeecccccCceEecCCceeEEEEec
Confidence 00 012223388899999999999998 66665554 3478889999999999999999999999999999
Q ss_pred ccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEee
Q 048511 205 VGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQ 284 (351)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 284 (351)
... ..+.........+.+++.+||+.++++++ +.|++||+++.+ .+..+.+|.++|++++|..
T Consensus 132 ~~~-----~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~ke----------vv~~ftgh~s~v~t~~f~~ 194 (541)
T KOG4547|consen 132 KEK-----VIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKE----------VVITFTGHGSPVRTLSFTT 194 (541)
T ss_pred ccc-----eeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCce----------EEEEecCCCcceEEEEEEE
Confidence 886 45677777778899999999999999887 679999999887 7888899999999999987
Q ss_pred eCC-----CcEEE-EecCCCeEEEEecC
Q 048511 285 GKG-----NHRFV-SGADEKVARVFEAP 306 (351)
Q Consensus 285 ~~~-----~~~l~-s~~~dg~v~vw~~~ 306 (351)
+ |.+++ +...+..+.+|-+.
T Consensus 195 --~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 195 --LIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred --eccccccceeeeccccccceeEEEEE
Confidence 4 45554 45567788889865
No 234
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=2e-12 Score=114.97 Aligned_cols=193 Identities=17% Similarity=0.121 Sum_probs=127.9
Q ss_pred CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEee-CCCcEEEEec--CCCcccceeeccccc
Q 048511 5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSS-QDKVIRIWKL--ALRGSSANTQSTYRK 81 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~-~dg~i~iwd~--~~~~~~~~~~~~~~~ 81 (351)
+..|++||+.+ ++...+..+.+|. ..++|+ |+++.|+.++ .+|.+.||.+ .++..
T Consensus 227 ~~~i~i~dl~t-g~~~~l~~~~g~~---~~~~wS--------PDG~~La~~~~~~g~~~Iy~~d~~~~~~---------- 284 (429)
T PRK01742 227 KSQLVVHDLRS-GARKVVASFRGHN---GAPAFS--------PDGSRLAFASSKDGVLNIYVMGANGGTP---------- 284 (429)
T ss_pred CcEEEEEeCCC-CceEEEecCCCcc---CceeEC--------CCCCEEEEEEecCCcEEEEEEECCCCCe----------
Confidence 35799999988 7655555565554 468999 8898888764 6887777654 33221
Q ss_pred ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEee-cCCeEEEEeccCCCc
Q 048511 82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS-MDKTMMIWQPEKTTG 160 (351)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~ 160 (351)
..+..+...+....|+ +|++. |+.++ .++...||++....+
T Consensus 285 --------------------------~~lt~~~~~~~~~~wS------pDG~~------i~f~s~~~g~~~I~~~~~~~~ 326 (429)
T PRK01742 285 --------------------------SQLTSGAGNNTEPSWS------PDGQS------ILFTSDRSGSPQVYRMSASGG 326 (429)
T ss_pred --------------------------EeeccCCCCcCCEEEC------CCCCE------EEEEECCCCCceEEEEECCCC
Confidence 1123355567789999 78876 66544 578889998765323
Q ss_pred ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE
Q 048511 161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV 240 (351)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~ 240 (351)
.. ..+ .+.. ....|+|+|++|+..+.++ +.+||+.++.. ......+ ....+.|+|+|++|+.+
T Consensus 327 ~~-~~l------~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~-----~~lt~~~--~~~~~~~sPdG~~i~~~ 389 (429)
T PRK01742 327 GA-SLV------GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGST-----EVLSSTF--LDESPSISPNGIMIIYS 389 (429)
T ss_pred Ce-EEe------cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCe-----EEecCCC--CCCCceECCCCCEEEEE
Confidence 22 111 1111 4578999999998887765 56699987642 1111111 23467899999999999
Q ss_pred eCCCcEEEEcCCC--ccccccCccceEEeccccccccceeEEEEee
Q 048511 241 SHDQTTRVFAPWK--NVASLMGENSWHEVARPQVHGHDINCVTIIQ 284 (351)
Q Consensus 241 ~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 284 (351)
+.++.+.+|++.. +. ....+..|...+...+|+|
T Consensus 390 s~~g~~~~l~~~~~~G~----------~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 390 STQGLGKVLQLVSADGR----------FKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred EcCCCceEEEEEECCCC----------ceEEccCCCCCCCCcccCC
Confidence 9999888887643 32 3444456667788899988
No 235
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=1.9e-10 Score=93.52 Aligned_cols=267 Identities=15% Similarity=0.132 Sum_probs=166.1
Q ss_pred CCCCCceEEEEEccCCCceEEEEeee-ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc------
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELK-GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA------ 73 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~------ 73 (351)
++..|-+|++|+-.. . +...++ .-...|+||+|- | -.+..|+.|+..| |.+|.........
T Consensus 115 va~nddvVriy~kss-t---~pt~Lks~sQrnvtclawR----P---lsaselavgCr~g-IciW~~s~tln~~r~~~~~ 182 (445)
T KOG2139|consen 115 VATNDDVVRIYDKSS-T---CPTKLKSVSQRNVTCLAWR----P---LSASELAVGCRAG-ICIWSDSRTLNANRNIRMM 182 (445)
T ss_pred hhccCcEEEEeccCC-C---CCceecchhhcceeEEEec----c---CCcceeeeeecce-eEEEEcCcccccccccccc
Confidence 367889999999876 3 233333 224589999999 3 3456788888765 8999876433221
Q ss_pred ------eeecccccceeeeEeeecCCeEEecC-CceeEEEEEeccc--------cccceEEEEecCCCCCCCCCcccCCC
Q 048511 74 ------NTQSTYRKEVISLASYIEGPVLVAGS-SSYQVSVESLLIG--------HEDWVYSVQWEPPSTAPSDGVSCQQP 138 (351)
Q Consensus 74 ------~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~--------h~~~v~~l~~~p~~~~~~~~~~~~~~ 138 (351)
....+....+.+|.|.+||..++.++ .+..+.+|..-.+ .-+.+.-+.|+ ||+.+
T Consensus 183 s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwS------Pdgd~---- 252 (445)
T KOG2139|consen 183 STHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWS------PDGDV---- 252 (445)
T ss_pred cccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEc------CCCCE----
Confidence 12222246788999999999998865 4566677665333 23457789999 79999
Q ss_pred ceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc--------
Q 048511 139 SSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID-------- 210 (351)
Q Consensus 139 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-------- 210 (351)
|+.+.-|+..++|+... .-...... -..+.|...+|+|+|+.|+.+.. |.-++|.+.-....
T Consensus 253 --lfaAt~davfrlw~e~q--~wt~erw~-----lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~ 322 (445)
T KOG2139|consen 253 --LFAATCDAVFRLWQENQ--SWTKERWI-----LGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQS 322 (445)
T ss_pred --EEEecccceeeeehhcc--cceeccee-----ccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCccc
Confidence 99999999999997654 22222222 23347999999999997665443 23345554321110
Q ss_pred --Ccccccccc-----c----ccccEEEEEeecCCCEEEEEeCCC--------cEEEEcCCCccccccCccceEEecccc
Q 048511 211 --NWQPQKVPS-----G----HFAAVMDISWSRSSDYLLSVSHDQ--------TTRVFAPWKNVASLMGENSWHEVARPQ 271 (351)
Q Consensus 211 --~~~~~~~~~-----~----~~~~v~~v~~sp~~~~l~s~~~dg--------~i~vwd~~~~~~~~~~~~~~~~~~~~~ 271 (351)
...++..+. . -.+++.+++|.|.|.+|++.-..+ .|.+||.+.... ..+.......
T Consensus 323 ~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~-----vels~cg~i~ 397 (445)
T KOG2139|consen 323 IKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPP-----VELSYCGMIG 397 (445)
T ss_pred ceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCc-----eEEEeccccc
Confidence 001111111 1 135688999999999999765433 467787765541 1111112222
Q ss_pred ccccceeEEEEeee-CCCcEEEEecCCCeEEEEecC
Q 048511 272 VHGHDINCVTIIQG-KGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 272 ~~~~~i~~~~~~~~-~~~~~l~s~~~dg~v~vw~~~ 306 (351)
+. ....++|.|. .++.+|..+-..|.+.-|.+.
T Consensus 398 ge--~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 398 GE--YPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred CC--CCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 22 2455666653 346666677788888877754
No 236
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.46 E-value=1e-10 Score=101.10 Aligned_cols=235 Identities=11% Similarity=0.072 Sum_probs=143.6
Q ss_pred CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511 4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV 83 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 83 (351)
.+|+|.|.|..+ . +.+..+......-..+.|+ ++++++++++.||.|.++|+.+.+.+..+..
T Consensus 14 ~~~~v~viD~~t-~--~~~~~i~~~~~~h~~~~~s--------~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~------ 76 (369)
T PF02239_consen 14 GSGSVAVIDGAT-N--KVVARIPTGGAPHAGLKFS--------PDGRYLYVANRDGTVSVIDLATGKVVATIKV------ 76 (369)
T ss_dssp GGTEEEEEETTT----SEEEEEE-STTEEEEEE-T--------T-SSEEEEEETTSEEEEEETTSSSEEEEEE-------
T ss_pred CCCEEEEEECCC-C--eEEEEEcCCCCceeEEEec--------CCCCEEEEEcCCCeEEEEECCcccEEEEEec------
Confidence 578999999988 5 3456666544333446788 8899999999999999999998876544431
Q ss_pred eeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEe-ecCCeEEEEeccCCCcce
Q 048511 84 ISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSA-SMDKTMMIWQPEKTTGIW 162 (351)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~ 162 (351)
.....+++++ +||++ ++++ ..++.+.++|.++ .+.
T Consensus 77 ------------------------------G~~~~~i~~s------~DG~~------~~v~n~~~~~v~v~D~~t--le~ 112 (369)
T PF02239_consen 77 ------------------------------GGNPRGIAVS------PDGKY------VYVANYEPGTVSVIDAET--LEP 112 (369)
T ss_dssp ------------------------------SSEEEEEEE--------TTTE------EEEEEEETTEEEEEETTT----E
T ss_pred ------------------------------CCCcceEEEc------CCCCE------EEEEecCCCceeEecccc--ccc
Confidence 2346789999 78988 7665 4689999999998 777
Q ss_pred EEEEEeccccc--cccceEEEEEcCCCCEEEEEeeC-CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEE
Q 048511 163 MNVVTVGELSH--SALGFYGGHWSPDGRSILAHGYG-GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLS 239 (351)
Q Consensus 163 ~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d-g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s 239 (351)
+..+....... ....+..+..+|....++..-.| +.|.+.|..... .+...............|+|++++++.
T Consensus 113 v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~----~~~~~~i~~g~~~~D~~~dpdgry~~v 188 (369)
T PF02239_consen 113 VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK----NLKVTTIKVGRFPHDGGFDPDGRYFLV 188 (369)
T ss_dssp EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS----CEEEEEEE--TTEEEEEE-TTSSEEEE
T ss_pred eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc----ccceeeecccccccccccCcccceeee
Confidence 77776543322 34567788888888866666554 888888876642 222222233456778999999998766
Q ss_pred E-eCCCcEEEEcCCCcccccc---------------------------------------------CccceEEecccccc
Q 048511 240 V-SHDQTTRVFAPWKNVASLM---------------------------------------------GENSWHEVARPQVH 273 (351)
Q Consensus 240 ~-~~dg~i~vwd~~~~~~~~~---------------------------------------------~~~~~~~~~~~~~~ 273 (351)
+ ..+..|.++|.++++.... ....|+.+..+...
T Consensus 189 a~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~ 268 (369)
T PF02239_consen 189 AANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ 268 (369)
T ss_dssp EEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S
T ss_pred cccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC
Confidence 5 4466788888776643321 11223333333333
Q ss_pred ccceeEEEEeeeCCCcEEEEe----cCCCeEEEEecC
Q 048511 274 GHDINCVTIIQGKGNHRFVSG----ADEKVARVFEAP 306 (351)
Q Consensus 274 ~~~i~~~~~~~~~~~~~l~s~----~~dg~v~vw~~~ 306 (351)
+.. .-+..+| ++.++.+. .+.+.|.|+|..
T Consensus 269 G~g-lFi~thP--~s~~vwvd~~~~~~~~~v~viD~~ 302 (369)
T PF02239_consen 269 GGG-LFIKTHP--DSRYVWVDTFLNPDADTVQVIDKK 302 (369)
T ss_dssp SSS---EE--T--T-SEEEEE-TT-SSHT-EEEEECC
T ss_pred CCc-ceeecCC--CCccEEeeccCCCCCceEEEEECc
Confidence 333 4556677 77777776 456889999976
No 237
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.43 E-value=4.8e-11 Score=106.42 Aligned_cols=221 Identities=15% Similarity=0.094 Sum_probs=139.1
Q ss_pred CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCC---CcEEEEecCCCcccceeeccccc
Q 048511 5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQD---KVIRIWKLALRGSSANTQSTYRK 81 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~~~~~ 81 (351)
...|.++|... .. ...+..+...+....|+ +++++|+.++.+ ..|.+||+.++....
T Consensus 169 ~~~l~~~d~~g-~~---~~~l~~~~~~~~~p~~S--------pdg~~la~~~~~~~~~~i~v~d~~~g~~~~-------- 228 (417)
T TIGR02800 169 RYELQVADYDG-AN---PQTITRSREPILSPAWS--------PDGQKLAYVSFESGKPEIYVQDLATGQREK-------- 228 (417)
T ss_pred cceEEEEcCCC-CC---CEEeecCCCceecccCC--------CCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------
Confidence 34577788765 32 23444566678899999 889999887654 479999987654221
Q ss_pred ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeE-EeecCC--eEEEEeccCC
Q 048511 82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSIL-SASMDK--TMMIWQPEKT 158 (351)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~-s~~~d~--~i~iwd~~~~ 158 (351)
+..+...+.++.|+ +|++. |+ +.+.++ .|.+||+.+
T Consensus 229 ----------------------------~~~~~~~~~~~~~s------pDg~~------l~~~~~~~~~~~i~~~d~~~- 267 (417)
T TIGR02800 229 ----------------------------VASFPGMNGAPAFS------PDGSK------LAVSLSKDGNPDIYVMDLDG- 267 (417)
T ss_pred ----------------------------eecCCCCccceEEC------CCCCE------EEEEECCCCCccEEEEECCC-
Confidence 11233445668899 67775 54 444444 588888876
Q ss_pred CcceEEEEEeccccccccceEEEEEcCCCCEEEEEee-CC--eEEEEEcccCcccCcccccccccccccEEEEEeecCCC
Q 048511 159 TGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY-GG--AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSD 235 (351)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 235 (351)
+... .+. .+........|+|+++.|+..+. ++ .|+++|+.+++ ...+..+...+....|+|+++
T Consensus 268 -~~~~-~l~-----~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~------~~~l~~~~~~~~~~~~spdg~ 334 (417)
T TIGR02800 268 -KQLT-RLT-----NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE------VRRLTFRGGYNASPSWSPDGD 334 (417)
T ss_pred -CCEE-ECC-----CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC------EEEeecCCCCccCeEECCCCC
Confidence 4322 121 22233446789999998876654 33 57777776653 223333445667789999999
Q ss_pred EEEEEeCCC---cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCC---eEEEEecCchh
Q 048511 236 YLLSVSHDQ---TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEK---VARVFEAPLSF 309 (351)
Q Consensus 236 ~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg---~v~vw~~~~~~ 309 (351)
+|+.++.++ .|.+||+.++.. ..+.. . ......+|+| ++++|+..+.++ .+.+.+..++.
T Consensus 335 ~i~~~~~~~~~~~i~~~d~~~~~~--------~~l~~---~-~~~~~p~~sp--dg~~l~~~~~~~~~~~l~~~~~~g~~ 400 (417)
T TIGR02800 335 LIAFVHREGGGFNIAVMDLDGGGE--------RVLTD---T-GLDESPSFAP--NGRMILYATTRGGRGVLGLVSTDGRF 400 (417)
T ss_pred EEEEEEccCCceEEEEEeCCCCCe--------EEccC---C-CCCCCceECC--CCCEEEEEEeCCCcEEEEEEECCCce
Confidence 998887765 788999876541 12221 1 1234568998 888887766543 46666666655
Q ss_pred hhce
Q 048511 310 LKTL 313 (351)
Q Consensus 310 ~~~~ 313 (351)
...+
T Consensus 401 ~~~~ 404 (417)
T TIGR02800 401 RARL 404 (417)
T ss_pred eeEC
Confidence 4443
No 238
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.42 E-value=1e-11 Score=113.37 Aligned_cols=157 Identities=15% Similarity=0.159 Sum_probs=120.3
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG 220 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 220 (351)
++.+..++.+.+||... +.....++-.+ ...-....-+-++++.-++++|+.-+.|.+|+..... .+. .+.+
T Consensus 102 i~l~~~~ns~~i~d~~~--~~~~~~i~~~e-r~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn----~p~-~l~G 173 (967)
T KOG0974|consen 102 IALVTSRNSLLIRDSKN--SSVLSKIQSDE-RCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN----KPI-RLKG 173 (967)
T ss_pred EEEEEcCceEEEEeccc--CceehhcCCCc-eEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC----Ccc-eecc
Confidence 88888999999999986 44333332000 0000011223345666789999999999999997432 223 6889
Q ss_pred ccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeE
Q 048511 221 HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVA 300 (351)
Q Consensus 221 ~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v 300 (351)
|.+.|.++.|+-||+++++.|+|+++|+|++.+.+. ......+|...++.+.|.| + .+++++.|.+.
T Consensus 174 HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~---------~~~~~fgHsaRvw~~~~~~--n--~i~t~gedctc 240 (967)
T KOG0974|consen 174 HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV---------LGCTGFGHSARVWACCFLP--N--RIITVGEDCTC 240 (967)
T ss_pred cCCceEEEEEccCCcEEEEEecCcceeeeecccccc---------cCcccccccceeEEEEecc--c--eeEEeccceEE
Confidence 999999999999999999999999999999998872 2235568999999999998 4 99999999999
Q ss_pred EEEecCchhhhceeeccc
Q 048511 301 RVFEAPLSFLKTLNHATF 318 (351)
Q Consensus 301 ~vw~~~~~~~~~~~~~~~ 318 (351)
++|+.++..+..+.+|.+
T Consensus 241 rvW~~~~~~l~~y~~h~g 258 (967)
T KOG0974|consen 241 RVWGVNGTQLEVYDEHSG 258 (967)
T ss_pred EEEecccceehhhhhhhh
Confidence 999988888877776654
No 239
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.38 E-value=6.5e-12 Score=120.34 Aligned_cols=187 Identities=11% Similarity=0.098 Sum_probs=148.6
Q ss_pred eecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEE
Q 048511 26 KGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVS 105 (351)
Q Consensus 26 ~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 105 (351)
+.|-..|.++.-+ |...+.+||+.||.|++|....++.+.......+..+..+.|+.+|+.+.+++.++.+.
T Consensus 2205 k~~v~~v~r~~sH--------p~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSH--------PSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLS 2276 (2439)
T ss_pred ecccCceeeecCC--------CCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCcee
Confidence 3445567777766 67889999999999999999988887777666667888999999999999999888887
Q ss_pred EEEe-------ccccccceEEEEecCCCCCCCCCcccCCCceeEEee---cCCeEEEEeccCCCcceEEEEEeccccccc
Q 048511 106 VESL-------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS---MDKTMMIWQPEKTTGIWMNVVTVGELSHSA 175 (351)
Q Consensus 106 ~~~~-------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 175 (351)
+++. .+.|......+.|. . .. +++++ .++.+.+||.-......... ..|.
T Consensus 2277 l~q~~pk~~~s~qchnk~~~Df~Fi------~--s~------~~tag~s~d~~n~~lwDtl~~~~~s~v~------~~H~ 2336 (2439)
T KOG1064|consen 2277 LWQASPKPYTSWQCHNKALSDFRFI------G--SL------LATAGRSSDNRNVCLWDTLLPPMNSLVH------TCHD 2336 (2439)
T ss_pred ecccCCcceeccccCCccccceeee------e--hh------hhccccCCCCCcccchhcccCcccceee------eecC
Confidence 6653 56788888888887 3 44 67665 47889999976532332222 2788
Q ss_pred cceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511 176 LGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 176 ~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
..++++++.|..+.|++|+.+|.|++||++.. ++++.++. +. ...+|++++..|.++||++....
T Consensus 2337 ~gaT~l~~~P~~qllisggr~G~v~l~D~rqr-----ql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2337 GGATVLAYAPKHQLLISGGRKGEVCLFDIRQR-----QLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred CCceEEEEcCcceEEEecCCcCcEEEeehHHH-----HHHHHhhh---------hh-hhheeeccCcccceEEEEccccc
Confidence 89999999999999999999999999999886 44555543 44 56789999999999999997664
No 240
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=1.1e-12 Score=112.06 Aligned_cols=216 Identities=16% Similarity=0.269 Sum_probs=142.0
Q ss_pred EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511 20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS 99 (351)
Q Consensus 20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (351)
..+..+.||...|..++-. .+.+-+++++.|++|++|.++....-..
T Consensus 726 irL~nf~GH~~~iRai~Ai--------dNENSFiSASkDKTVKLWSik~EgD~~~------------------------- 772 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAI--------DNENSFISASKDKTVKLWSIKPEGDEIG------------------------- 772 (1034)
T ss_pred eeeecccCcHHHhHHHHhc--------ccccceeeccCCceEEEEEeccccCccc-------------------------
Confidence 4567788999999999877 6788899999999999999975432111
Q ss_pred CceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceE
Q 048511 100 SSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFY 179 (351)
Q Consensus 100 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~ 179 (351)
.-.+.-+++.|+.+|.++.|. .+-+. +++ -|+.|++||.-. +..+..+.-....+....|.
T Consensus 773 ---tsaCQfTY~aHkk~i~~igfL------~~lr~------i~S--cD~giHlWDPFi--gr~Laq~~dapk~~a~~~ik 833 (1034)
T KOG4190|consen 773 ---TSACQFTYQAHKKPIHDIGFL------ADLRS------IAS--CDGGIHLWDPFI--GRLLAQMEDAPKEGAGGNIK 833 (1034)
T ss_pred ---cceeeeEhhhccCcccceeee------eccce------eee--ccCcceeecccc--cchhHhhhcCcccCCCceeE
Confidence 112345678899999999999 66655 655 488899999876 54444332211122223344
Q ss_pred EEEEcCCCCEEEE-EeeCCeEEEEEcccCcccCcccc---cccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511 180 GGHWSPDGRSILA-HGYGGAFHLWRNVGVDIDNWQPQ---KVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 180 ~i~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~~~~~~---~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
|+. +-+...++. ++...+|+++|.+..+ |.+. ..-.+....+++++..+.|++++.+-.+|.|.+.|.++++
T Consensus 834 cl~-nv~~~iliAgcsaeSTVKl~DaRsce---~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 834 CLE-NVDRHILIAGCSAESTVKLFDARSCE---WTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred ecc-cCcchheeeeccchhhheeeeccccc---ceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc
Confidence 443 223344444 4678999999998764 2222 2223445678999999999999999999999999999997
Q ss_pred ccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEE-Ee
Q 048511 256 ASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARV-FE 304 (351)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~v-w~ 304 (351)
. ...|++.. -.+..++- | ..+.++....|..+.| |.
T Consensus 910 v----INswrpme------cdllqlaa-p--sdq~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 910 V----INSWRPME------CDLLQLAA-P--SDQALAQSALDHSLAVNWH 946 (1034)
T ss_pred e----eccCCccc------chhhhhcC-c--hhHHHHhhcccceeEeeeh
Confidence 3 22344322 22222221 2 3455555556666666 54
No 241
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.37 E-value=4.8e-09 Score=90.71 Aligned_cols=227 Identities=12% Similarity=0.096 Sum_probs=145.7
Q ss_pred CCceEEEEEccCC-CceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC-CCcEEEEecCCCcccceee-----
Q 048511 4 LDNKIHLYRGQRT-GKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ-DKVIRIWKLALRGSSANTQ----- 76 (351)
Q Consensus 4 ~dg~i~vw~~~~~-~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~----- 76 (351)
.+|.|..|++..+ +++..+............++++ +++++|+++.. +|.|.++++.....+....
T Consensus 60 ~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~--------~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~ 131 (345)
T PF10282_consen 60 DSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVD--------PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRH 131 (345)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEEC--------TTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEES
T ss_pred CCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEe--------cCCCEEEEEEccCCeEEEEEccCCcccceeeeeccc
Confidence 5788999998875 6777777666445566789999 88999998874 8999999998753332221
Q ss_pred --------cccccceeeeEeeecCCeEEecCCc-eeEEEEEe------------cc-ccccceEEEEecCCCCCCCCCcc
Q 048511 77 --------STYRKEVISLASYIEGPVLVAGSSS-YQVSVESL------------LI-GHEDWVYSVQWEPPSTAPSDGVS 134 (351)
Q Consensus 77 --------~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~------------~~-~h~~~v~~l~~~p~~~~~~~~~~ 134 (351)
........++.++|+++++++.+.. ..+..... +. .....-..+.|+ +++++
T Consensus 132 ~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~------pdg~~ 205 (345)
T PF10282_consen 132 EGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFS------PDGKY 205 (345)
T ss_dssp EEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-------TTSSE
T ss_pred CCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEc------CCcCE
Confidence 1123456688999999988874321 12222111 11 122346788999 67776
Q ss_pred cCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccc--c-cccceEEEEEcCCCCEEEEEee-CCeEEEEEccc--Cc
Q 048511 135 CQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELS--H-SALGFYGGHWSPDGRSILAHGY-GGAFHLWRNVG--VD 208 (351)
Q Consensus 135 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~-~~~~i~~i~~~~~~~~l~~~~~-dg~i~~~d~~~--~~ 208 (351)
+.++.-.++.|.++++....+.......+.... . .......|+++|++++|+++.. .+.|.+|+++. +.
T Consensus 206 -----~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~ 280 (345)
T PF10282_consen 206 -----AYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT 280 (345)
T ss_dssp -----EEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT
T ss_pred -----EEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc
Confidence 145556688999999994334433322222211 1 1125778999999999888774 58899999943 22
Q ss_pred ccCcccccccccccccEEEEEeecCCCEEEEEe-CCCcEEEEcCC
Q 048511 209 IDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS-HDQTTRVFAPW 252 (351)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-~dg~i~vwd~~ 252 (351)
. +.+..+.......+.+.++|+|++|+++. .++.|.+|++.
T Consensus 281 l---~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 281 L---TLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp E---EEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred e---EEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 1 33333333344589999999999998776 46789999874
No 242
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.36 E-value=1.2e-11 Score=97.66 Aligned_cols=188 Identities=14% Similarity=0.111 Sum_probs=129.7
Q ss_pred CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511 4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV 83 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 83 (351)
.+|.+.+-+... ..++.++.+++|.-+.+...|+ . .+.++++|||.|+.+..||++-...
T Consensus 141 s~G~~~~v~~t~-~~le~vq~wk~He~E~Wta~f~----~---~~pnlvytGgDD~~l~~~D~R~p~~------------ 200 (339)
T KOG0280|consen 141 SRGSISGVYETE-MVLEKVQTWKVHEFEAWTAKFS----D---KEPNLVYTGGDDGSLSCWDIRIPKT------------ 200 (339)
T ss_pred CCCcEEEEecce-eeeeecccccccceeeeeeecc----c---CCCceEEecCCCceEEEEEecCCcc------------
Confidence 456666444444 4556677899999999999998 2 3457999999999999999984331
Q ss_pred eeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceE
Q 048511 84 ISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWM 163 (351)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 163 (351)
.+++..+.|...|.++.-+| +.+.+ +++|+.|-.|++||.+.. ++++
T Consensus 201 ---------------------~i~~n~kvH~~GV~SI~ss~-----~~~~~------I~TGsYDe~i~~~DtRnm-~kPl 247 (339)
T KOG0280|consen 201 ---------------------FIWHNSKVHTSGVVSIYSSP-----PKPTY------IATGSYDECIRVLDTRNM-GKPL 247 (339)
T ss_pred ---------------------eeeecceeeecceEEEecCC-----CCCce------EEEeccccceeeeehhcc-cCcc
Confidence 12344566899999999998 77778 999999999999999963 3333
Q ss_pred EEEEeccccccccceEEEEEcCCC--CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe
Q 048511 164 NVVTVGELSHSALGFYGGHWSPDG--RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS 241 (351)
Q Consensus 164 ~~~~~~~~~~~~~~i~~i~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~ 241 (351)
..- ...+.|+.+.++|.- ..|+++-.+| .+|-+...+....-......+.|.+-+..-.|..-...|+|++
T Consensus 248 ~~~------~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCs 320 (339)
T KOG0280|consen 248 FKA------KVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCS 320 (339)
T ss_pred ccC------ccccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeee
Confidence 322 234789999999953 3445444444 6777776654321123445566777777777755445688876
Q ss_pred -CCCcEE-EEcC
Q 048511 242 -HDQTTR-VFAP 251 (351)
Q Consensus 242 -~dg~i~-vwd~ 251 (351)
.|+.++ +|-.
T Consensus 321 FYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 321 FYDKKIRQLWLH 332 (339)
T ss_pred ccccceeeeeee
Confidence 366644 6643
No 243
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=3.4e-10 Score=97.07 Aligned_cols=251 Identities=12% Similarity=0.113 Sum_probs=154.9
Q ss_pred eEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeee
Q 048511 7 KIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISL 86 (351)
Q Consensus 7 ~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 86 (351)
.+++|++++ + .....++.-...-++..|+ .+..+.|-- ..+.+.+|++...+...... +...+..+
T Consensus 106 n~~v~~vet-~--~~~s~~q~k~Q~~W~~qfs--------~dEsl~arl-v~nev~f~~~~~f~~~~~kl--~~~~i~~f 171 (566)
T KOG2315|consen 106 NVLVYNVET-G--VQRSQIQKKMQNGWVPQFS--------IDESLAARL-VSNEVQFYDLGSFKTIQHKL--SVSGITML 171 (566)
T ss_pred ceeeeeecc-c--eehhheehhhhcCcccccc--------cchhhhhhh-hcceEEEEecCCccceeeee--eccceeeE
Confidence 477999988 6 2333333222222688898 555443322 24569999998744332222 23456666
Q ss_pred EeeecC--CeEEe-----cCCceeEEEEEecc--ccc---------cceEEEEecCCCCCCCCCcccCCCceeEEeecC-
Q 048511 87 ASYIEG--PVLVA-----GSSSYQVSVESLLI--GHE---------DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD- 147 (351)
Q Consensus 87 ~~~~~~--~~l~~-----~~~~~~~~~~~~~~--~h~---------~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d- 147 (351)
.++|.+ ..+++ ++....++++..-. .|. ..=..+.|++ -+.- -.+|++..-|
T Consensus 172 ~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~------~gt~---LLvLastdVDk 242 (566)
T KOG2315|consen 172 SLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNK------LGTA---LLVLASTDVDK 242 (566)
T ss_pred EecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEecc------CCce---EEEEEEEeecC
Confidence 666653 34443 23334444443221 111 1122456663 2221 0112233223
Q ss_pred --------CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe--eCCeEEEEEcccCcccCcccccc
Q 048511 148 --------KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG--YGGAFHLWRNVGVDIDNWQPQKV 217 (351)
Q Consensus 148 --------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~ 217 (351)
.++++.+++. ......+ ...++|.++.|+|+++.++++. .--.+.|||++.. ++..
T Consensus 243 tn~SYYGEq~Lyll~t~g--~s~~V~L------~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~------~v~d 308 (566)
T KOG2315|consen 243 TNASYYGEQTLYLLATQG--ESVSVPL------LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK------PVFD 308 (566)
T ss_pred CCccccccceEEEEEecC--ceEEEec------CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC------EeEe
Confidence 3577777763 2222222 3578999999999998766543 5678999999883 4555
Q ss_pred cccccccEEEEEeecCCCEEEEEeC---CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEe
Q 048511 218 PSGHFAAVMDISWSRSSDYLLSVSH---DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSG 294 (351)
Q Consensus 218 ~~~~~~~v~~v~~sp~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~ 294 (351)
+ .+++=+++-|+|.|++|+.++- -|.|.|||+.+.+ .+.++.... -+-+.|+| ||++|+++
T Consensus 309 f--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K----------~i~~~~a~~--tt~~eW~P--dGe~flTA 372 (566)
T KOG2315|consen 309 F--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK----------LIAKFKAAN--TTVFEWSP--DGEYFLTA 372 (566)
T ss_pred C--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchh----------hccccccCC--ceEEEEcC--CCcEEEEE
Confidence 5 3556678999999999988775 4899999998866 666665554 45689999 99999988
Q ss_pred cC------CCeEEEEecCchhh
Q 048511 295 AD------EKVARVFEAPLSFL 310 (351)
Q Consensus 295 ~~------dg~v~vw~~~~~~~ 310 (351)
.. |..++||+..|..+
T Consensus 373 TTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 373 TTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred eccccEEecCCeEEEEecCcee
Confidence 73 67899999887654
No 244
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=1.1e-10 Score=104.22 Aligned_cols=163 Identities=14% Similarity=0.146 Sum_probs=105.6
Q ss_pred ccccceEEEEecCCCCCCCCCcccCCCceeEEeec---CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCC
Q 048511 112 GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM---DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR 188 (351)
Q Consensus 112 ~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 188 (351)
.+...+.+.+|+ ||++. |+..+. ...|.+||+.. +.... +. ..........|+|+|+
T Consensus 201 ~~~~~v~~p~wS------pDg~~------la~~s~~~~~~~l~~~dl~~--g~~~~-l~-----~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 201 RSAEPILSPAWS------PDGKK------LAYVSFERGRSAIYVQDLAT--GQREL-VA-----SFRGINGAPSFSPDGR 260 (433)
T ss_pred cCCCccccccCC------CCCCE------EEEEecCCCCcEEEEEECCC--CCEEE-ec-----cCCCCccCceECCCCC
Confidence 456678899999 78888 887764 34699999987 43322 11 1223345789999999
Q ss_pred EEEE-EeeCC--eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-CCc--EEEEcCCCccccccCcc
Q 048511 189 SILA-HGYGG--AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-DQT--TRVFAPWKNVASLMGEN 262 (351)
Q Consensus 189 ~l~~-~~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-dg~--i~vwd~~~~~~~~~~~~ 262 (351)
.|+. .+.++ .|++||+.+++ ...+..+.......+|+|||++|+..+. ++. |+++|+..+..
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~------ 328 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQ------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA------ 328 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCC------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe------
Confidence 7754 44454 69999998764 2334445445567899999998887664 444 66666655431
Q ss_pred ceEEeccccccccceeEEEEeeeCCCcEEEEecCCC---eEEEEecCchhhhce
Q 048511 263 SWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEK---VARVFEAPLSFLKTL 313 (351)
Q Consensus 263 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg---~v~vw~~~~~~~~~~ 313 (351)
+.+. .++......+|+| ++++|+..+.++ .|.+|++.+.....+
T Consensus 329 --~~lt---~~g~~~~~~~~Sp--DG~~Ia~~~~~~~~~~I~v~d~~~g~~~~L 375 (433)
T PRK04922 329 --ERLT---FQGNYNARASVSP--DGKKIAMVHGSGGQYRIAVMDLSTGSVRTL 375 (433)
T ss_pred --EEee---cCCCCccCEEECC--CCCEEEEEECCCCceeEEEEECCCCCeEEC
Confidence 1222 1223345689999 888887654332 699999874433333
No 245
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=4.7e-10 Score=100.21 Aligned_cols=163 Identities=13% Similarity=0.059 Sum_probs=109.2
Q ss_pred cccccceEEEEecCCCCCCCCCcccCCCceeEEeec---CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCC
Q 048511 111 IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM---DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG 187 (351)
Q Consensus 111 ~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 187 (351)
..|...+.+..|+ ||++. |+..+. +..|.+||+.+ +... .+. .....+...+|+|+|
T Consensus 198 t~~~~~v~~p~wS------pDG~~------lay~s~~~g~~~i~~~dl~~--g~~~-~l~-----~~~g~~~~~~~SPDG 257 (435)
T PRK05137 198 TDGSSLVLTPRFS------PNRQE------ITYMSYANGRPRVYLLDLET--GQRE-LVG-----NFPGMTFAPRFSPDG 257 (435)
T ss_pred ecCCCCeEeeEEC------CCCCE------EEEEEecCCCCEEEEEECCC--CcEE-Eee-----cCCCcccCcEECCCC
Confidence 4567789999999 78887 877764 46899999987 4432 222 234456788999999
Q ss_pred CEEE-EEeeCCe--EEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-CC--cEEEEcCCCccccccCc
Q 048511 188 RSIL-AHGYGGA--FHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-DQ--TTRVFAPWKNVASLMGE 261 (351)
Q Consensus 188 ~~l~-~~~~dg~--i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~ 261 (351)
+.|+ +.+.++. |++||+.++. ...+..+........|+|||+.|+..+. ++ .|+++|+..+..
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~----- 326 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGT------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP----- 326 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCc------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-----
Confidence 9775 4455554 7777887753 3344445556677899999998887664 33 688888765541
Q ss_pred cceEEeccccccccceeEEEEeeeCCCcEEEEecCC---CeEEEEecCchhhhc
Q 048511 262 NSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE---KVARVFEAPLSFLKT 312 (351)
Q Consensus 262 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---g~v~vw~~~~~~~~~ 312 (351)
+.+. .+...+....|+| +++.|+..+.+ ..|.+|++.+...+.
T Consensus 327 ---~~lt---~~~~~~~~~~~Sp--dG~~ia~~~~~~~~~~i~~~d~~~~~~~~ 372 (435)
T PRK05137 327 ---RRIS---FGGGRYSTPVWSP--RGDLIAFTKQGGGQFSIGVMKPDGSGERI 372 (435)
T ss_pred ---EEee---cCCCcccCeEECC--CCCEEEEEEcCCCceEEEEEECCCCceEe
Confidence 1222 1233456788999 88888776533 468888876544333
No 246
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=2.1e-10 Score=101.91 Aligned_cols=194 Identities=11% Similarity=0.026 Sum_probs=122.1
Q ss_pred CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEe-eCCC--cEEEEecCCCcccceeeccccc
Q 048511 5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSS-SQDK--VIRIWKLALRGSSANTQSTYRK 81 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~-~~dg--~i~iwd~~~~~~~~~~~~~~~~ 81 (351)
+..|++|++.+ ++...+..+.+| +....|+ |+|+.|+.. +.+| .|.+||+.++....
T Consensus 222 ~~~i~i~dl~~-G~~~~l~~~~~~---~~~~~~S--------PDG~~La~~~~~~g~~~I~~~d~~tg~~~~-------- 281 (429)
T PRK03629 222 RSALVIQTLAN-GAVRQVASFPRH---NGAPAFS--------PDGSKLAFALSKTGSLNLYVMDLASGQIRQ-------- 281 (429)
T ss_pred CcEEEEEECCC-CCeEEccCCCCC---cCCeEEC--------CCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------
Confidence 45788999887 765555555544 4468999 889887754 4455 48888887653221
Q ss_pred ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec-CCeEEEE--eccCC
Q 048511 82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM-DKTMMIW--QPEKT 158 (351)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~-d~~i~iw--d~~~~ 158 (351)
+..+...+....|+ ||++. |+..+. ++...|| |+..
T Consensus 282 ----------------------------lt~~~~~~~~~~wS------PDG~~------I~f~s~~~g~~~Iy~~d~~~- 320 (429)
T PRK03629 282 ----------------------------VTDGRSNNTEPTWF------PDSQN------LAYTSDQAGRPQVYKVNING- 320 (429)
T ss_pred ----------------------------ccCCCCCcCceEEC------CCCCE------EEEEeCCCCCceEEEEECCC-
Confidence 12223456778999 78887 766665 3444555 5544
Q ss_pred CcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC---CeEEEEEcccCcccCcccccccccccccEEEEEeecCCC
Q 048511 159 TGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG---GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSD 235 (351)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 235 (351)
+.. ..+. ..........|+|+|++|+..+.+ ..|.+||+.++.. ..+... .......|+|||+
T Consensus 321 -g~~-~~lt-----~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~------~~Lt~~-~~~~~p~~SpDG~ 386 (429)
T PRK03629 321 -GAP-QRIT-----WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV------QVLTDT-FLDETPSIAPNGT 386 (429)
T ss_pred -CCe-EEee-----cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe------EEeCCC-CCCCCceECCCCC
Confidence 332 2222 122335578999999998876643 3588899887642 122211 1234578999999
Q ss_pred EEEEEeCCCc---EEEEcCCCccccccCccceEEeccccccccceeEEEEee
Q 048511 236 YLLSVSHDQT---TRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQ 284 (351)
Q Consensus 236 ~l~s~~~dg~---i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 284 (351)
+|+.++.++. +.++++.... ...+..|...+...+|+|
T Consensus 387 ~i~~~s~~~~~~~l~~~~~~G~~-----------~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 387 MVIYSSSQGMGSVLNLVSTDGRF-----------KARLPATDGQVKFPAWSP 427 (429)
T ss_pred EEEEEEcCCCceEEEEEECCCCC-----------eEECccCCCCcCCcccCC
Confidence 9998887764 6677764332 223345666788888887
No 247
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.33 E-value=5.4e-11 Score=95.49 Aligned_cols=188 Identities=17% Similarity=0.231 Sum_probs=127.7
Q ss_pred EEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEecccc
Q 048511 34 SLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGH 113 (351)
Q Consensus 34 ~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h 113 (351)
-..|+ ++|+++|+++.- .+.|-|.++-+..+... -
T Consensus 13 ~c~fS--------p~g~yiAs~~~y-rlviRd~~tlq~~qlf~------------------------------------c 47 (447)
T KOG4497|consen 13 FCSFS--------PCGNYIASLSRY-RLVIRDSETLQLHQLFL------------------------------------C 47 (447)
T ss_pred ceeEC--------CCCCeeeeeeee-EEEEeccchhhHHHHHH------------------------------------H
Confidence 35677 889999999865 67777777654432221 1
Q ss_pred ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCE-EEE
Q 048511 114 EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRS-ILA 192 (351)
Q Consensus 114 ~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~ 192 (351)
-+.|.-+.|. .|..+ .|.....|+.|.+|++.. .++...+. ....++.+++|+|+|+. |.+
T Consensus 48 ldki~yieW~------ads~~-----ilC~~yk~~~vqvwsl~Q--pew~ckId-----eg~agls~~~WSPdgrhiL~t 109 (447)
T KOG4497|consen 48 LDKIVYIEWK------ADSCH-----ILCVAYKDPKVQVWSLVQ--PEWYCKID-----EGQAGLSSISWSPDGRHILLT 109 (447)
T ss_pred HHHhhheeee------cccee-----eeeeeeccceEEEEEeec--ceeEEEec-----cCCCcceeeeECCCcceEeee
Confidence 2456667777 44443 156667899999999998 77777776 56678999999999964 556
Q ss_pred EeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-CC---------------------------
Q 048511 193 HGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-DQ--------------------------- 244 (351)
Q Consensus 193 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-dg--------------------------- 244 (351)
...+-+|.+|.+.+.. ..-+.-....+..++|+|+|++.+.++. |.
T Consensus 110 seF~lriTVWSL~t~~------~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dltg 183 (447)
T KOG4497|consen 110 SEFDLRITVWSLNTQK------GYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTG 183 (447)
T ss_pred ecceeEEEEEEeccce------eEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccC
Confidence 6789999999998853 2333333445678889999988766653 21
Q ss_pred --------cEEEEcCCCccccccCccceEEecccccc-ccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511 245 --------TTRVFAPWKNVASLMGENSWHEVARPQVH-GHDINCVTIIQGKGNHRFVSGADEKVARVFE 304 (351)
Q Consensus 245 --------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~ 304 (351)
.+.|||.--.. .+ +..| +-.+..++|+| .+++|+.|+.|+.+||-+
T Consensus 184 ieWsPdg~~laVwd~~Ley----------kv--~aYe~~lG~k~v~wsP--~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 184 IEWSPDGNWLAVWDNVLEY----------KV--YAYERGLGLKFVEWSP--CNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred ceECCCCcEEEEecchhhh----------ee--eeeeeccceeEEEecc--ccceEEeeccchhhhhhc
Confidence 22233221000 00 1112 23588899999 899999999999999855
No 248
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=3.3e-11 Score=103.20 Aligned_cols=232 Identities=13% Similarity=0.117 Sum_probs=156.7
Q ss_pred CCCCCceEEEEEccCC----CceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceee
Q 048511 1 MGGLDNKIHLYRGQRT----GKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQ 76 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~----~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~ 76 (351)
+++.|.+|++|.++.. +.-.+..++++|+.+|..+.|. .+-++++++ ||-|.+||.--+..+....
T Consensus 752 SASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL--------~~lr~i~Sc--D~giHlWDPFigr~Laq~~ 821 (1034)
T KOG4190|consen 752 SASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFL--------ADLRSIASC--DGGIHLWDPFIGRLLAQME 821 (1034)
T ss_pred eccCCceEEEEEeccccCccccceeeeEhhhccCcccceeee--------eccceeeec--cCcceeecccccchhHhhh
Confidence 4789999999998752 2224778999999999999999 777788766 8899999988776654333
Q ss_pred cccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEecc
Q 048511 77 STYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPE 156 (351)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 156 (351)
... ..+-.+.|.|+.-. +..+ +++-++...+|+++|.+
T Consensus 822 dap------------------------------k~~a~~~ikcl~nv-------~~~i-----liAgcsaeSTVKl~DaR 859 (1034)
T KOG4190|consen 822 DAP------------------------------KEGAGGNIKCLENV-------DRHI-----LIAGCSAESTVKLFDAR 859 (1034)
T ss_pred cCc------------------------------ccCCCceeEecccC-------cchh-----eeeeccchhhheeeecc
Confidence 210 11122234444321 2223 14444789999999999
Q ss_pred CCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCE
Q 048511 157 KTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDY 236 (351)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 236 (351)
. ..+...+++.........+.+++..+.|++++++-.+|.|.+.|.++++ .+......+.....++ .|..+.
T Consensus 860 s--ce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~-----vINswrpmecdllqla-apsdq~ 931 (1034)
T KOG4190|consen 860 S--CEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK-----VINSWRPMECDLLQLA-APSDQA 931 (1034)
T ss_pred c--ccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc-----eeccCCcccchhhhhc-CchhHH
Confidence 9 8899998887777777889999999999999999999999999999984 3444443333333343 355567
Q ss_pred EEEEeCCCcEEE-EcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 237 LLSVSHDQTTRV-FAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 237 l~s~~~dg~i~v-wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
|+....|-++.| |-...+.. ....+....+. -|..+ -|.-+++......+.||.-.
T Consensus 932 L~~saldHslaVnWhaldgim----------h~q~kpppepa---hflqs-vgpSLV~a~~Gn~lgVYad~ 988 (1034)
T KOG4190|consen 932 LAQSALDHSLAVNWHALDGIM----------HLQDKPPPEPA---HFLQS-VGPSLVTAQNGNILGVYADS 988 (1034)
T ss_pred HHhhcccceeEeeehhcCCee----------eeccCCCCcch---hhhhc-cCceeEEeccCcEEEEEecc
Confidence 777777888888 87655541 11111111111 11110 25567888788888998743
No 249
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.31 E-value=2.2e-10 Score=92.60 Aligned_cols=238 Identities=11% Similarity=0.125 Sum_probs=151.0
Q ss_pred CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEE
Q 048511 29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES 108 (351)
Q Consensus 29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 108 (351)
.+-|.+|.|. ..|++||||..+|.|.++.-.....- .. ....
T Consensus 25 adiis~vef~--------~~Ge~LatGdkgGRVv~f~r~~~~~~-ey-----------------------------~~~t 66 (433)
T KOG1354|consen 25 ADIISAVEFD--------HYGERLATGDKGGRVVLFEREKLYKG-EY-----------------------------NFQT 66 (433)
T ss_pred hcceeeEEee--------cccceEeecCCCCeEEEeeccccccc-ce-----------------------------eeee
Confidence 4678999999 89999999999999999865433210 00 1111
Q ss_pred ecccc------------ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcce-------------E
Q 048511 109 LLIGH------------EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIW-------------M 163 (351)
Q Consensus 109 ~~~~h------------~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-------------~ 163 (351)
.++.| ...|..+.|.+.. +... ++....|.+|++|.++....+. +
T Consensus 67 ~fqshepEFDYLkSleieEKinkIrw~~~~----n~a~------FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~ 136 (433)
T KOG1354|consen 67 EFQSHEPEFDYLKSLEIEEKINKIRWLDDG----NLAE------FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTI 136 (433)
T ss_pred eeeccCcccchhhhhhhhhhhhhceecCCC----CccE------EEEecCCcceeeeeeeccccccccccccccCCCCcc
Confidence 22222 3468889999432 2233 7888899999999987632211 0
Q ss_pred EEEEe----------------ccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccc-----c
Q 048511 164 NVVTV----------------GELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH-----F 222 (351)
Q Consensus 164 ~~~~~----------------~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~-----~ 222 (351)
..+++ .-...|..-|.++.++.|+..++++ .|=.|.+|+++-.... ..+..++.+ .
T Consensus 137 ~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~s--FnIVDIKP~nmEeLt 213 (433)
T KOG1354|consen 137 TSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQS--FNIVDIKPANMEELT 213 (433)
T ss_pred ceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cceeeeeccccccCCc--eeEEEccccCHHHHH
Confidence 00000 0024677778999999998877765 5778999998653210 111222222 3
Q ss_pred ccEEEEEeecC-CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccc------cccccceeEEEEeeeCCCcEEEEec
Q 048511 223 AAVMDISWSRS-SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARP------QVHGHDINCVTIIQGKGNHRFVSGA 295 (351)
Q Consensus 223 ~~v~~v~~sp~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~l~s~~ 295 (351)
.-|++..|+|. ...|+-.+..|+|++-|++.........+.+.....+ ...-..|..+.|++ +|+++++-+
T Consensus 214 eVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~--sGryilsRD 291 (433)
T KOG1354|consen 214 EVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSH--SGRYILSRD 291 (433)
T ss_pred HHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEcc--CCcEEEEec
Confidence 45888999995 4567777889999999998554221111112111111 11123589999999 899998874
Q ss_pred CCCeEEEEecC--chhhhceeeccccc
Q 048511 296 DEKVARVFEAP--LSFLKTLNHATFQE 320 (351)
Q Consensus 296 ~dg~v~vw~~~--~~~~~~~~~~~~~~ 320 (351)
. -+|++||++ .+.+.+++-|+-.+
T Consensus 292 y-ltvk~wD~nme~~pv~t~~vh~~lr 317 (433)
T KOG1354|consen 292 Y-LTVKLWDLNMEAKPVETYPVHEYLR 317 (433)
T ss_pred c-ceeEEEeccccCCcceEEeehHhHH
Confidence 4 489999975 66777777766443
No 250
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=1.1e-09 Score=98.08 Aligned_cols=220 Identities=13% Similarity=0.039 Sum_probs=133.1
Q ss_pred eEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCC---CcEEEEecCCCcccceeecccccce
Q 048511 7 KIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQD---KVIRIWKLALRGSSANTQSTYRKEV 83 (351)
Q Consensus 7 ~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~ 83 (351)
.|.++|.+. ++ ...+..+...+....|+ |+|+.|+..+.+ ..|.+|++.++....
T Consensus 180 ~l~~~d~~g-~~---~~~l~~~~~~~~~p~wS--------pDG~~la~~s~~~~~~~l~~~~l~~g~~~~---------- 237 (430)
T PRK00178 180 TLQRSDYDG-AR---AVTLLQSREPILSPRWS--------PDGKRIAYVSFEQKRPRIFVQNLDTGRREQ---------- 237 (430)
T ss_pred EEEEECCCC-CC---ceEEecCCCceeeeeEC--------CCCCEEEEEEcCCCCCEEEEEECCCCCEEE----------
Confidence 466777765 32 23444567788999999 889988876644 358888887654321
Q ss_pred eeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeE-EeecCC--eEEEEeccCCCc
Q 048511 84 ISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSIL-SASMDK--TMMIWQPEKTTG 160 (351)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~-s~~~d~--~i~iwd~~~~~~ 160 (351)
+....+.+....|+ ||++. |+ +.+.++ .|.+||+.+ +
T Consensus 238 --------------------------l~~~~g~~~~~~~S------pDG~~------la~~~~~~g~~~Iy~~d~~~--~ 277 (430)
T PRK00178 238 --------------------------ITNFEGLNGAPAWS------PDGSK------LAFVLSKDGNPEIYVMDLAS--R 277 (430)
T ss_pred --------------------------ccCCCCCcCCeEEC------CCCCE------EEEEEccCCCceEEEEECCC--C
Confidence 11112234467899 68876 65 444454 588888887 4
Q ss_pred ceEEEEEeccccccccceEEEEEcCCCCEEEEEee-CC--eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEE
Q 048511 161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY-GG--AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYL 237 (351)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l 237 (351)
... .+. .+........|+|+++.++..+. ++ .|+++|+.+++. ..+...........|+|+|++|
T Consensus 278 ~~~-~lt-----~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~------~~lt~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 278 QLS-RVT-----NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA------ERVTFVGNYNARPRLSADGKTL 345 (430)
T ss_pred CeE-Ecc-----cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE------EEeecCCCCccceEECCCCCEE
Confidence 332 221 23334556789999998776553 33 577777766542 1111111223457899999998
Q ss_pred EEEeCC-C--cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC---CeEEEEecCchhhh
Q 048511 238 LSVSHD-Q--TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE---KVARVFEAPLSFLK 311 (351)
Q Consensus 238 ~s~~~d-g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---g~v~vw~~~~~~~~ 311 (351)
+..+.+ + .|.+||+.++.. +.+... . ......|+| |+++++..+.+ ..+.++++.+...+
T Consensus 346 ~~~~~~~~~~~l~~~dl~tg~~--------~~lt~~-~---~~~~p~~sp--dg~~i~~~~~~~g~~~l~~~~~~g~~~~ 411 (430)
T PRK00178 346 VMVHRQDGNFHVAAQDLQRGSV--------RILTDT-S---LDESPSVAP--NGTMLIYATRQQGRGVLMLVSINGRVRL 411 (430)
T ss_pred EEEEccCCceEEEEEECCCCCE--------EEccCC-C---CCCCceECC--CCCEEEEEEecCCceEEEEEECCCCceE
Confidence 776643 3 588889877652 122211 1 122458999 88888766543 35667777766554
Q ss_pred cee
Q 048511 312 TLN 314 (351)
Q Consensus 312 ~~~ 314 (351)
.+.
T Consensus 412 ~l~ 414 (430)
T PRK00178 412 PLP 414 (430)
T ss_pred ECc
Confidence 444
No 251
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=6.1e-10 Score=99.09 Aligned_cols=167 Identities=13% Similarity=0.115 Sum_probs=104.6
Q ss_pred ccccceEEEEecCCCCCCCCCcccCCCceeEEeecC---CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCC
Q 048511 112 GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD---KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR 188 (351)
Q Consensus 112 ~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 188 (351)
.+...+.+.+|+ ||++. |+..+.+ ..|.+||+.+ +.... +. .....+...+|+|||+
T Consensus 193 ~~~~~v~~p~wS------PDG~~------la~~s~~~~~~~I~~~dl~~--g~~~~-l~-----~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 193 SSPEPIISPAWS------PDGTK------LAYVSFESKKPVVYVHDLAT--GRRRV-VA-----NFKGSNSAPAWSPDGR 252 (427)
T ss_pred cCCCCcccceEc------CCCCE------EEEEEccCCCcEEEEEECCC--CCEEE-ee-----cCCCCccceEECCCCC
Confidence 456778899999 78887 8776643 4599999987 44322 11 1223456789999999
Q ss_pred EEE-EEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-CCcEEEEcCCCccccccCccceEE
Q 048511 189 SIL-AHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-DQTTRVFAPWKNVASLMGENSWHE 266 (351)
Q Consensus 189 ~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~ 266 (351)
.|+ +.+.++...||.++... .....+..+........|+|||+.|+..+. ++...||.+..... ....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~----~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g------~~~~ 322 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADG----SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG------AAQR 322 (427)
T ss_pred EEEEEEccCCCceEEEEECCC----CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC------ceEE
Confidence 876 45677776666654321 113344445555667889999998876554 46666666532210 1112
Q ss_pred eccccccccceeEEEEeeeCCCcEEEEecCCC---eEEEEecCchhhhce
Q 048511 267 VARPQVHGHDINCVTIIQGKGNHRFVSGADEK---VARVFEAPLSFLKTL 313 (351)
Q Consensus 267 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg---~v~vw~~~~~~~~~~ 313 (351)
+. . .+......+|+| +|++|+..+.++ .|.+||+.....+.+
T Consensus 323 lt-~--~g~~~~~~~~Sp--DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l 367 (427)
T PRK02889 323 VT-F--TGSYNTSPRISP--DGKLLAYISRVGGAFKLYVQDLATGQVTAL 367 (427)
T ss_pred Ee-c--CCCCcCceEECC--CCCEEEEEEccCCcEEEEEEECCCCCeEEc
Confidence 21 1 122234678999 899988766554 699999874333333
No 252
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.29 E-value=1.2e-09 Score=94.26 Aligned_cols=117 Identities=16% Similarity=0.119 Sum_probs=97.5
Q ss_pred cccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEE
Q 048511 111 IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSI 190 (351)
Q Consensus 111 ~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 190 (351)
..|.+.|.++.++ .+-.. |-+++.|+.+..|+... ...++... .....+.+++.+||+..+
T Consensus 99 ~~h~~~v~~~~~~------~~~~c------iyS~~ad~~v~~~~~~~--~~~~~~~~-----~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 99 DKHYGNVNEILDA------QRLGC------IYSVGADLKVVYILEKE--KVIIRIWK-----EQKPLVSSLCISPDGKIL 159 (541)
T ss_pred CCCCCcceeeecc------cccCc------eEecCCceeEEEEeccc--ceeeeeec-----cCCCccceEEEcCCCCEE
Confidence 5699999999998 67777 99999999999999998 66666655 566678899999999999
Q ss_pred EEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC-----CCEEEEE-eCCCcEEEEcCCC
Q 048511 191 LAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS-----SDYLLSV-SHDQTTRVFAPWK 253 (351)
Q Consensus 191 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~-----~~~l~s~-~~dg~i~vwd~~~ 253 (351)
++++ +.|.+||+++. +.+..+.+|.++|+++.|.-+ |.++.++ ..+..+.+|-+..
T Consensus 160 ~~as--~~ik~~~~~~k-----evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTAS--RQIKVLDIETK-----EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eecc--ceEEEEEccCc-----eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9875 57999999998 568999999999999999876 6666544 4567788887655
No 253
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.28 E-value=3.6e-08 Score=83.63 Aligned_cols=266 Identities=12% Similarity=0.047 Sum_probs=154.9
Q ss_pred ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC----------CCcEEEEecCCCccccee
Q 048511 6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ----------DKVIRIWKLALRGSSANT 75 (351)
Q Consensus 6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~----------dg~i~iwd~~~~~~~~~~ 75 (351)
++|.+.|..+ . +.+.++..-..+- .+ ++ ++++.|+.+.. +..|.+||..+.+....+
T Consensus 27 ~~v~ViD~~~-~--~v~g~i~~G~~P~-~~-~s--------pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i 93 (352)
T TIGR02658 27 TQVYTIDGEA-G--RVLGMTDGGFLPN-PV-VA--------SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADI 93 (352)
T ss_pred ceEEEEECCC-C--EEEEEEEccCCCc-ee-EC--------CCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEE
Confidence 8899999988 5 3444554322222 24 88 78888777654 789999999999888776
Q ss_pred ecccc------cceeeeEeeecCCeEEecCC--ceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEe---
Q 048511 76 QSTYR------KEVISLASYIEGPVLVAGSS--SYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSA--- 144 (351)
Q Consensus 76 ~~~~~------~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~--- 144 (351)
..+.. .....++++++|+.+++... +..+.++..-.+ .-+..+.. +++.. +...
T Consensus 94 ~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~--kvv~ei~v-------p~~~~------vy~t~e~ 158 (352)
T TIGR02658 94 ELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK--AFVRMMDV-------PDCYH------IFPTAND 158 (352)
T ss_pred ccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCC--cEEEEEeC-------CCCcE------EEEecCC
Confidence 65432 23347889999999987663 455554443221 11222221 22222 2222
Q ss_pred -----ecCCeEEEEeccCCCcceEEEEEeccccccccceE-EEEEcC-CCCEEEEEeeCCeEEEEEcccCcccCcccccc
Q 048511 145 -----SMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFY-GGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKV 217 (351)
Q Consensus 145 -----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~-~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 217 (351)
+.||......+............+.. ....++. .-.|.+ +++++++... |.|.+.|+.............
T Consensus 159 ~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~--~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~ 235 (352)
T TIGR02658 159 TFFMHCRDGSLAKVGYGTKGNPKIKPTEVFH--PEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEA 235 (352)
T ss_pred ccEEEeecCceEEEEecCCCceEEeeeeeec--CCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeee
Confidence 34554444433331111111111100 0000000 003455 8888887776 999999975543222222222
Q ss_pred cc-------cccccEEEEEeecCCCEEEEEeC----------CCcEEEEcCCCccccccCccceEEeccccccccceeEE
Q 048511 218 PS-------GHFAAVMDISWSRSSDYLLSVSH----------DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCV 280 (351)
Q Consensus 218 ~~-------~~~~~v~~v~~sp~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (351)
+. ...+.+..++++|+++.++.... .+.|.++|..+.+ .+..+. -+..+..+
T Consensus 236 ~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k----------vi~~i~-vG~~~~~i 304 (352)
T TIGR02658 236 FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK----------RLRKIE-LGHEIDSI 304 (352)
T ss_pred ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe----------EEEEEe-CCCceeeE
Confidence 11 12344455999999988877431 2579999998876 343332 24568999
Q ss_pred EEeeeCCCc-EEEEec-CCCeEEEEecC-chhhhceee
Q 048511 281 TIIQGKGNH-RFVSGA-DEKVARVFEAP-LSFLKTLNH 315 (351)
Q Consensus 281 ~~~~~~~~~-~l~s~~-~dg~v~vw~~~-~~~~~~~~~ 315 (351)
++++ |++ +|++.. .++.|.++|.. ++.++++..
T Consensus 305 avS~--Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~ 340 (352)
T TIGR02658 305 NVSQ--DAKPLLYALSTGDKTLYIFDAETGKELSSVNQ 340 (352)
T ss_pred EECC--CCCeEEEEeCCCCCcEEEEECcCCeEEeeecc
Confidence 9999 777 666555 68899999976 667766643
No 254
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=1e-10 Score=100.51 Aligned_cols=190 Identities=11% Similarity=0.182 Sum_probs=137.9
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK 81 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~ 81 (351)
|+....|+-++++. |.+ +..|.-..+.+++|..+ +-..+|++|+.||.|..||.+....+..+...
T Consensus 151 ~gsg~evYRlNLEq-Grf--L~P~~~~~~~lN~v~in--------~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~--- 216 (703)
T KOG2321|consen 151 VGSGSEVYRLNLEQ-GRF--LNPFETDSGELNVVSIN--------EEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA--- 216 (703)
T ss_pred eecCcceEEEEccc-ccc--ccccccccccceeeeec--------CccceEEecccCceEEEecchhhhhheeeecc---
Confidence 34455677888888 854 45666667899999999 67789999999999999999887665444321
Q ss_pred ceeeeEeeecCCeEEecCCceeEEEEEeccccc-----cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEecc
Q 048511 82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHE-----DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPE 156 (351)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~-----~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 156 (351)
.....|. -.|+++.|. .+|-. +++|..+|.|.|||++
T Consensus 217 --------------------------~~v~s~pg~~~~~svTal~F~------d~gL~------~aVGts~G~v~iyDLR 258 (703)
T KOG2321|consen 217 --------------------------SSVNSHPGGDAAPSVTALKFR------DDGLH------VAVGTSTGSVLIYDLR 258 (703)
T ss_pred --------------------------cccCCCccccccCcceEEEec------CCcee------EEeeccCCcEEEEEcc
Confidence 1112222 349999999 67878 9999999999999999
Q ss_pred CCCcceEEEEEeccccccccceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCC
Q 048511 157 KTTGIWMNVVTVGELSHSALGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSD 235 (351)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 235 (351)
. ...+.... .....+|..+.|.+.+. --+.......++|||-.+++ +...+. ....+..+|+-|++-
T Consensus 259 a--~~pl~~kd----h~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk-----~~asiE-pt~~lND~C~~p~sG 326 (703)
T KOG2321|consen 259 A--SKPLLVKD----HGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGK-----PMASIE-PTSDLNDFCFVPGSG 326 (703)
T ss_pred c--CCceeecc----cCCccceeeecccccCCCceEEecchHHhhhcccccCC-----ceeecc-ccCCcCceeeecCCc
Confidence 8 43332221 24567899999987532 23334455789999999884 344444 344599999999999
Q ss_pred EEEEEeCCCcEEEEcCCCcc
Q 048511 236 YLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 236 ~l~s~~~dg~i~vwd~~~~~ 255 (351)
+++++-.+..+..|=+....
T Consensus 327 m~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 327 MFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred eEEEecCCCcceeEEccccC
Confidence 99999988888777665443
No 255
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.26 E-value=4.3e-10 Score=90.92 Aligned_cols=174 Identities=14% Similarity=0.181 Sum_probs=116.1
Q ss_pred CCceEEEEEccCC-CceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccc
Q 048511 4 LDNKIHLYRGQRT-GKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKE 82 (351)
Q Consensus 4 ~dg~i~vw~~~~~-~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 82 (351)
.+|++.-+.+..+ ++....+.+..|...|..+-|+ ...+++++.+.|..+.---.+.+..+....... .
T Consensus 88 ~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~--------~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~--~ 157 (404)
T KOG1409|consen 88 DNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFS--------LTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET--P 157 (404)
T ss_pred ecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEec--------CCceeEEEeccccceEEEeeccCCcccceEeec--c
Confidence 3455555544321 2334556677899999999999 678899999999877543344444433222111 1
Q ss_pred eeeeEeeecCCeEEecCCceeE----------EEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511 83 VISLASYIEGPVLVAGSSSYQV----------SVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI 152 (351)
Q Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~----------~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i 152 (351)
...+.+.-. +...|...+.+ .++..+.+|.+.+.++.|. +...+ |.+|..|..+.+
T Consensus 158 ~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd------~~~~~------LfSg~~d~~vi~ 223 (404)
T KOG1409|consen 158 ASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD------PGQRL------LFSGASDHSVIM 223 (404)
T ss_pred CCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc------CCCcE------EEeccccCceEE
Confidence 111111111 33344444444 4456688999999999999 55667 999999999999
Q ss_pred EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccC
Q 048511 153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGV 207 (351)
Q Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~ 207 (351)
||+.-..+.... +.+|...|..+...+--+.+.+++.||.|.+|+++..
T Consensus 224 wdigg~~g~~~e------l~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 224 WDIGGRKGTAYE------LQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred EeccCCcceeee------eccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 999864333222 2367777888887777889999999999999998654
No 256
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=2.8e-09 Score=95.20 Aligned_cols=221 Identities=11% Similarity=0.020 Sum_probs=128.5
Q ss_pred eEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCC-C--cEEEEecCCCcccceeecccccce
Q 048511 7 KIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQD-K--VIRIWKLALRGSSANTQSTYRKEV 83 (351)
Q Consensus 7 ~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~ 83 (351)
.|.++|.+. .+. ..+..+...+.+..|+ |+|+.|+..+.+ + .|.+||+.+++....
T Consensus 199 ~l~i~d~dG-~~~---~~l~~~~~~~~~p~wS--------PDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--------- 257 (448)
T PRK04792 199 QLMIADYDG-YNE---QMLLRSPEPLMSPAWS--------PDGRKLAYVSFENRKAEIFVQDIYTQVREKV--------- 257 (448)
T ss_pred EEEEEeCCC-CCc---eEeecCCCcccCceEC--------CCCCEEEEEEecCCCcEEEEEECCCCCeEEe---------
Confidence 566667655 322 2334456788899999 889888876543 3 477888876543111
Q ss_pred eeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeE-EeecCCe--EEEEeccCCCc
Q 048511 84 ISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSIL-SASMDKT--MMIWQPEKTTG 160 (351)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~-s~~~d~~--i~iwd~~~~~~ 160 (351)
..+.+ ......|+ ||++. |+ +.+.++. |.++|+.+ +
T Consensus 258 ------------------------t~~~g---~~~~~~wS------PDG~~------La~~~~~~g~~~Iy~~dl~t--g 296 (448)
T PRK04792 258 ------------------------TSFPG---INGAPRFS------PDGKK------LALVLSKDGQPEIYVVDIAT--K 296 (448)
T ss_pred ------------------------cCCCC---CcCCeeEC------CCCCE------EEEEEeCCCCeEEEEEECCC--C
Confidence 11122 23357899 68876 65 4555665 77778776 4
Q ss_pred ceEEEEEeccccccccceEEEEEcCCCCEEEEEee-CC--eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEE
Q 048511 161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY-GG--AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYL 237 (351)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l 237 (351)
... .+. .+.......+|+|+++.|+..+. ++ .|+++|+.+++. ..+..........+|+|+|++|
T Consensus 297 ~~~-~lt-----~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~------~~Lt~~g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 297 ALT-RIT-----RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV------SRLTFEGEQNLGGSITPDGRSM 364 (448)
T ss_pred CeE-ECc-----cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE------EEEecCCCCCcCeeECCCCCEE
Confidence 322 222 23334567899999998876553 33 466667766532 1111122223456899999998
Q ss_pred EEEeC-CC--cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEec-CCC--eEEEEecCchhhh
Q 048511 238 LSVSH-DQ--TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGA-DEK--VARVFEAPLSFLK 311 (351)
Q Consensus 238 ~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~dg--~v~vw~~~~~~~~ 311 (351)
+..+. ++ .|.++|+.++.. ..+... .......|+| +++.|+..+ .++ .+.+++.++...+
T Consensus 365 ~~~~~~~g~~~I~~~dl~~g~~--------~~lt~~----~~d~~ps~sp--dG~~I~~~~~~~g~~~l~~~~~~G~~~~ 430 (448)
T PRK04792 365 IMVNRTNGKFNIARQDLETGAM--------QVLTST----RLDESPSVAP--NGTMVIYSTTYQGKQVLAAVSIDGRFKA 430 (448)
T ss_pred EEEEecCCceEEEEEECCCCCe--------EEccCC----CCCCCceECC--CCCEEEEEEecCCceEEEEEECCCCceE
Confidence 76654 34 455567766541 122211 1122347999 888776554 344 3677788777666
Q ss_pred ceee
Q 048511 312 TLNH 315 (351)
Q Consensus 312 ~~~~ 315 (351)
.+..
T Consensus 431 ~l~~ 434 (448)
T PRK04792 431 RLPA 434 (448)
T ss_pred ECcC
Confidence 6643
No 257
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.22 E-value=2.2e-10 Score=91.43 Aligned_cols=269 Identities=14% Similarity=0.205 Sum_probs=156.6
Q ss_pred CCCCCceEEEEEccCC--CceEEEEeeeecC------------CceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEec
Q 048511 1 MGGLDNKIHLYRGQRT--GKFVRACELKGHT------------DWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKL 66 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~--~~~~~~~~~~~h~------------~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~ 66 (351)
||...|.|.+|.-+.. .+++....+++|. ..|..+.|..+ .....++..+.|++|++|.+
T Consensus 43 tGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~------t~r~hFLlstNdktiKlWKi 116 (460)
T COG5170 43 TGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDD------TGRNHFLLSTNDKTIKLWKI 116 (460)
T ss_pred ecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecC------CCcceEEEecCCceeeeeee
Confidence 4566699999976651 1234445677775 36888999822 22345666778999999999
Q ss_pred CCCcccceeecccccceeeeEeeecCCeEEe------c--CCceeE---EEEEec-cccccceEEEEecCCCCCCCCCcc
Q 048511 67 ALRGSSANTQSTYRKEVISLASYIEGPVLVA------G--SSSYQV---SVESLL-IGHEDWVYSVQWEPPSTAPSDGVS 134 (351)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~--~~~~~~---~~~~~~-~~h~~~v~~l~~~p~~~~~~~~~~ 134 (351)
........... ....-.-+|.+..+.+ + +....+ ...+.. ..|.--++++.|+ .|.+.
T Consensus 117 yeknlk~va~n----nls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N------sD~et 186 (460)
T COG5170 117 YEKNLKVVAEN----NLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN------SDKET 186 (460)
T ss_pred ecccchhhhcc----ccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec------Cchhe
Confidence 76533211110 0000001111111110 0 011111 111112 5688889999999 67776
Q ss_pred cCCCceeEEeecCCeEEEEeccCCCcce-EEEEEeccccccccceEEEEEcCCC-CEEEEEeeCCeEEEEEcccCcccCc
Q 048511 135 CQQPSSILSASMDKTMMIWQPEKTTGIW-MNVVTVGELSHSALGFYGGHWSPDG-RSILAHGYGGAFHLWRNVGVDIDNW 212 (351)
Q Consensus 135 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~ 212 (351)
++++ .|-.|.+|++.-..+.. +..++...+..-..-|++..|+|.. ..+.-++..|.|++-|++.......
T Consensus 187 ------~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn 259 (460)
T COG5170 187 ------LLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN 259 (460)
T ss_pred ------eeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC
Confidence 6665 67789999998643321 2223322233334458899999954 5667778889999999985421100
Q ss_pred -cccc----------ccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccc-------
Q 048511 213 -QPQK----------VPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHG------- 274 (351)
Q Consensus 213 -~~~~----------~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~------- 274 (351)
+.+. -+.+-...|..+.|+++|+++++-+. -+|+|||++..+. ++.+...|.
T Consensus 260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~---------pikTi~~h~~l~~~l~ 329 (460)
T COG5170 260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN---------PIKTIPMHCDLMDELN 329 (460)
T ss_pred chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC---------CceeechHHHHHHHHH
Confidence 0000 11122346888999999999987654 5899999987763 222221111
Q ss_pred -----c---ceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511 275 -----H---DINCVTIIQGKGNHRFVSGADEKVARVFE 304 (351)
Q Consensus 275 -----~---~i~~~~~~~~~~~~~l~s~~~dg~v~vw~ 304 (351)
. .-..+.|+. |...+++|+.....-++-
T Consensus 330 d~YEnDaifdkFeisfSg--d~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 330 DVYENDAIFDKFEISFSG--DDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred hhhhccceeeeEEEEecC--Ccccccccccccceeeec
Confidence 1 123466776 777888888777777765
No 258
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=1.5e-09 Score=95.89 Aligned_cols=244 Identities=17% Similarity=0.219 Sum_probs=165.5
Q ss_pred CCCCCceEEEEEccCC---C---------ceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCC
Q 048511 1 MGGLDNKIHLYRGQRT---G---------KFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLAL 68 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~---~---------~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~ 68 (351)
+|+.||.++|..+.++ . .+..-.++.||.+.|.-+.|+ .+...|-|+..+|.|.+|-+..
T Consensus 31 cgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWN--------e~~QKLTtSDt~GlIiVWmlyk 102 (1189)
T KOG2041|consen 31 CGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWN--------ENNQKLTTSDTSGLIIVWMLYK 102 (1189)
T ss_pred eccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEec--------cccccccccCCCceEEEEeeec
Confidence 5899999999987651 1 123345789999999999999 7788899999999999999998
Q ss_pred Ccccceeeccc-ccceeeeEeeecCCeEEecCCceeEEEEE---------eccccccceEEEEecCCCCCCCCCcccCCC
Q 048511 69 RGSSANTQSTY-RKEVISLASYIEGPVLVAGSSSYQVSVES---------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQP 138 (351)
Q Consensus 69 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~ 138 (351)
+....++.... .+-+.++.|..+|..+++.-.++.+.+-. .+++. ....+.|+ +|.++
T Consensus 103 gsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~ws------~D~~~---- 170 (1189)
T KOG2041|consen 103 GSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLWS------EDLEQ---- 170 (1189)
T ss_pred ccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh--eccceeec------ccHHH----
Confidence 88765554333 45677999999999998877777653322 12221 23467899 67777
Q ss_pred ceeEEeecCCeEEEEeccCC-----CcceEEEEEeccccccccceEEEEEc--------CCCCEEEEEeeCCeEEEEEcc
Q 048511 139 SSILSASMDKTMMIWQPEKT-----TGIWMNVVTVGELSHSALGFYGGHWS--------PDGRSILAHGYGGAFHLWRNV 205 (351)
Q Consensus 139 ~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~i~~i~~~--------~~~~~l~~~~~dg~i~~~d~~ 205 (351)
++.+-..|.++++|.+.. +..+..... +........|-.+.|. |+...++++...|.+.+..-.
T Consensus 171 --~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~t-g~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~e 247 (1189)
T KOG2041|consen 171 --ALFKKANGETHLYDNQGNFERKLEKDCEVNGT-GIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSE 247 (1189)
T ss_pred --HHhhhcCCcEEEecccccHHHhhhhceEEeee-eeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhc
Confidence 888888999999998741 011111111 0011112235566663 577899999999999887655
Q ss_pred cCcccCcccccccccccccEEEEEeecCCCEEEEEeCCC---------cEEEEcCCCccccccCccceEEeccccccccc
Q 048511 206 GVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQ---------TTRVFAPWKNVASLMGENSWHEVARPQVHGHD 276 (351)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg---------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (351)
+.. .++..- ..-.+..+.|+++|..|+.++.|. .|.+|.. ..+.+..++..+..
T Consensus 248 ND~----~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-----------~G~i~gtlkvpg~~ 310 (1189)
T KOG2041|consen 248 NDP----EPVVVD--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-----------YGHIVGTLKVPGSC 310 (1189)
T ss_pred CCC----CCeEEe--cccEeecceecCCCcEEEEccCcccccCccccceEEEecc-----------chhheEEEecCCce
Confidence 432 233222 224688899999999999988653 3444432 11244555666777
Q ss_pred eeEEEEee
Q 048511 277 INCVTIIQ 284 (351)
Q Consensus 277 i~~~~~~~ 284 (351)
|+.++|-.
T Consensus 311 It~lsWEg 318 (1189)
T KOG2041|consen 311 ITGLSWEG 318 (1189)
T ss_pred eeeeEEcC
Confidence 99999976
No 259
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=9e-09 Score=91.29 Aligned_cols=227 Identities=10% Similarity=-0.011 Sum_probs=125.7
Q ss_pred ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccE--E-EEeeCCCc--EEEEecCCCcccceeecccc
Q 048511 6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISIL--L-VSSSQDKV--IRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~--l-~t~~~dg~--i~iwd~~~~~~~~~~~~~~~ 80 (351)
..|.+.|.+. ++.. .+......+..-.|+ |+|+. + ++...+|. |.+.++..++....
T Consensus 165 ~~l~~~d~dG-~~~~---~lt~~~~~~~sP~wS--------PDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l------ 226 (428)
T PRK01029 165 GELWSVDYDG-QNLR---PLTQEHSLSITPTWM--------HIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI------ 226 (428)
T ss_pred ceEEEEcCCC-CCce---EcccCCCCcccceEc--------cCCCceEEEEEEccCCCceEEEEECCCCCceEe------
Confidence 4566667665 4332 233344556677899 77764 2 34444444 55556665532211
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec-----CCeEEEEec
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM-----DKTMMIWQP 155 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~-----d~~i~iwd~ 155 (351)
..+ .+.....+|+ |||+. |+..+. +..+.+|++
T Consensus 227 ---------------------------t~~---~g~~~~p~wS------PDG~~------Laf~s~~~g~~di~~~~~~~ 264 (428)
T PRK01029 227 ---------------------------LAL---QGNQLMPTFS------PRKKL------LAFISDRYGNPDLFIQSFSL 264 (428)
T ss_pred ---------------------------ecC---CCCccceEEC------CCCCE------EEEEECCCCCcceeEEEeec
Confidence 111 2233457888 68876 665442 333455676
Q ss_pred cCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-eCCeEEEEE--cccCcccCcccccccccccccEEEEEeec
Q 048511 156 EKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWR--NVGVDIDNWQPQKVPSGHFAAVMDISWSR 232 (351)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d--~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 232 (351)
..........+. . .........+|+|||+.|+..+ .+|...+|. +.... .....+..+...+....|+|
T Consensus 265 ~~g~~g~~~~lt--~--~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g----~~~~~lt~~~~~~~~p~wSP 336 (428)
T PRK01029 265 ETGAIGKPRRLL--N--EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG----QSPRLLTKKYRNSSCPAWSP 336 (428)
T ss_pred ccCCCCcceEee--c--CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc----cceEEeccCCCCccceeECC
Confidence 642111111121 0 1112335679999999877655 456555554 43211 11233333445667889999
Q ss_pred CCCEEEEEeCC---CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEec-C--CCeEEEEecC
Q 048511 233 SSDYLLSVSHD---QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGA-D--EKVARVFEAP 306 (351)
Q Consensus 233 ~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~--dg~v~vw~~~ 306 (351)
||+.|+..+.+ ..|.+||+.+++. ..+. .....+....|+| |++.|+..+ . ...|.+|++.
T Consensus 337 DG~~Laf~~~~~g~~~I~v~dl~~g~~--------~~Lt---~~~~~~~~p~wSp--DG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 337 DGKKIAFCSVIKGVRQICVYDLATGRD--------YQLT---TSPENKESPSWAI--DSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCe--------EEcc---CCCCCccceEECC--CCCEEEEEECCCCCceEEEEECC
Confidence 99988866543 4699999987762 1221 1123466789999 888776433 2 3568888887
Q ss_pred chhhhce
Q 048511 307 LSFLKTL 313 (351)
Q Consensus 307 ~~~~~~~ 313 (351)
+...+.+
T Consensus 404 ~g~~~~L 410 (428)
T PRK01029 404 TKKTRKI 410 (428)
T ss_pred CCCEEEe
Confidence 5444433
No 260
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.20 E-value=4.5e-10 Score=92.61 Aligned_cols=157 Identities=15% Similarity=0.206 Sum_probs=110.5
Q ss_pred CCCcccCCCceeEEeecCCeEEEEeccCCCc--ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccC
Q 048511 130 SDGVSCQQPSSILSASMDKTMMIWQPEKTTG--IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGV 207 (351)
Q Consensus 130 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~ 207 (351)
+.+++ ||.+..+....++++..... +...... -...-+.+.|..+......+..-|.++-+|+...
T Consensus 72 ~~~~l------lAv~~~~K~~~~f~~~~~~~~~kl~~~~~------v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 72 DSGRL------VAVATSSKQRAVFDYRENPKGAKLLDVSC------VPKRPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred CCceE------EEEEeCCCceEEEEEecCCCcceeeeEee------cccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 67777 89888888888888876322 1122221 1122344555555666666665555555555432
Q ss_pred cccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccc-cccccceeEEEEeeeC
Q 048511 208 DIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARP-QVHGHDINCVTIIQGK 286 (351)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~ 286 (351)
.. .+...+.+|-+.++.|+|+||+++|+++..|..|+|-.+.... .+..+ -+|..-|..++..+
T Consensus 140 ~~---~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f----------~IesfclGH~eFVS~isl~~-- 204 (390)
T KOG3914|consen 140 DS---GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF----------VIESFCLGHKEFVSTISLTD-- 204 (390)
T ss_pred cc---cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc----------chhhhccccHhheeeeeecc--
Confidence 11 2345566899999999999999999999999999997775543 33332 36888899999987
Q ss_pred CCcEEEEecCCCeEEEEecC-chhhhcee
Q 048511 287 GNHRFVSGADEKVARVFEAP-LSFLKTLN 314 (351)
Q Consensus 287 ~~~~l~s~~~dg~v~vw~~~-~~~~~~~~ 314 (351)
++.|++||.|++|++||+. |+.+.++.
T Consensus 205 -~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 205 -NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred -CceeeecCCCCcEEEEecccCCcccccc
Confidence 7789999999999999986 88776554
No 261
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.19 E-value=6.8e-11 Score=104.48 Aligned_cols=223 Identities=22% Similarity=0.309 Sum_probs=146.0
Q ss_pred eEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeee
Q 048511 7 KIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISL 86 (351)
Q Consensus 7 ~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 86 (351)
.-.+|++.....-.....+.+|..+|+.+.|. + .....|+|++.|-.+..||++..................+
T Consensus 92 kaiiwnlA~ss~~aIef~lhghsraitd~n~~----~---q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqV 164 (1081)
T KOG0309|consen 92 KAIIWNLAKSSSNAIEFVLHGHSRAITDINFN----P---QHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQV 164 (1081)
T ss_pred hhhhhhhhcCCccceEEEEecCccceeccccC----C---CCCcceeeccccccceeeeccCCCcceeeeecccccCcee
Confidence 34567765423224455778999999999999 3 3456999999999999999988765443333333444555
Q ss_pred EeeecCCeEEecCCceeEEE---------EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC
Q 048511 87 ASYIEGPVLVAGSSSYQVSV---------ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK 157 (351)
Q Consensus 87 ~~~~~~~~l~~~~~~~~~~~---------~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 157 (351)
.|+.....+.+......+.+ ...+++|...|+.++|.. ..... +.+.+.|++|+.||...
T Consensus 165 kwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr-----~~~s~------~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 165 KWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNR-----FKYSE------IMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred eecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhh-----hhhhh------hcccCCCCceeeecccc
Confidence 56554333333332233333 344677888899999883 23334 89999999999999987
Q ss_pred CCcceEEEEEeccccccccceEEEEEcCCCC--EEEEEeeCCeEEEEEcccCccc-----CcccccccccccccEEEEEe
Q 048511 158 TTGIWMNVVTVGELSHSALGFYGGHWSPDGR--SILAHGYGGAFHLWRNVGVDID-----NWQPQKVPSGHFAAVMDISW 230 (351)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~--~l~~~~~dg~i~~~d~~~~~~~-----~~~~~~~~~~~~~~v~~v~~ 230 (351)
...++..++. ...+|+.-++-|-|. ++.-.-.+..+.+++.++.... ..++++++.+|...|....|
T Consensus 234 St~e~~~~vt------t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlW 307 (1081)
T KOG0309|consen 234 STTESKRTVT------TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLW 307 (1081)
T ss_pred cccccceecc------ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhh
Confidence 4333333332 345677777777443 3332223335666655443222 34789999999999887777
Q ss_pred ecCCC----------EEEEEeCCCcEEEEcCCC
Q 048511 231 SRSSD----------YLLSVSHDQTTRVFAPWK 253 (351)
Q Consensus 231 sp~~~----------~l~s~~~dg~i~vwd~~~ 253 (351)
...+. .|+|=+.|..+++|-+.+
T Consensus 308 R~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 308 RKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred hhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 54322 589999999999998754
No 262
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.18 E-value=6.5e-09 Score=81.49 Aligned_cols=158 Identities=11% Similarity=-0.078 Sum_probs=108.7
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccc-ccc
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQK-VPS 219 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~ 219 (351)
+..++.|.++++.++.. +....... .....+.+++++++++++++.+....|..|.+..... ..+. ...
T Consensus 131 ~~i~sndht~k~~~~~~--~s~~~~~h-----~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se---y~~~~~~a 200 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSG--DSNKFAVH-----NQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE---YIENIYEA 200 (344)
T ss_pred eeeccCCcceeEEEEec--Ccccceee-----ccccceeeeEEcCCCceEEEecCCCcceEEEeCCccc---eeeeeEec
Confidence 77888999999999886 32222221 1113378899999999999999999999999976542 2222 222
Q ss_pred cccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCe
Q 048511 220 GHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKV 299 (351)
Q Consensus 220 ~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~ 299 (351)
..+..-.+..|+.....+|++..||++.|||++.... .....-..-..|.+.+..+.|++..--.+|.-.-.-+.
T Consensus 201 ~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t-----pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~ 275 (344)
T KOG4532|consen 201 PTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT-----PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSR 275 (344)
T ss_pred ccCCCceeeeeccCcceEEEEecCCcEEEEEeccccc-----chhhhcccCCCCCCceEEEEecCCCcceEEEEecCcce
Confidence 2334456788999889999999999999999998762 12222222335888899999997222345555556678
Q ss_pred EEEEecC-chhhhce
Q 048511 300 ARVFEAP-LSFLKTL 313 (351)
Q Consensus 300 v~vw~~~-~~~~~~~ 313 (351)
+.|-|+. +.-.+.+
T Consensus 276 ~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 276 VHVVDTRNYVNHQVI 290 (344)
T ss_pred EEEEEcccCceeeEE
Confidence 8888876 4433333
No 263
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.18 E-value=1.4e-10 Score=102.50 Aligned_cols=251 Identities=15% Similarity=0.148 Sum_probs=163.4
Q ss_pred CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc-cccceeeeEeeec--CCeEEec-------
Q 048511 29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST-YRKEVISLASYIE--GPVLVAG------- 98 (351)
Q Consensus 29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~l~~~------- 98 (351)
.+++.++..+ |.|+-+|.++.-| +.+-|+............ ..-.+....|++. ..+.++.
T Consensus 24 ~~~~~a~si~--------p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkai 94 (1081)
T KOG0309|consen 24 DGGFNAVSIN--------PSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAI 94 (1081)
T ss_pred cCcccceeec--------cccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhh
Confidence 5678888888 7788899898877 445676654322211111 1112223333332 2222221
Q ss_pred ------CCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccc
Q 048511 99 ------SSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELS 172 (351)
Q Consensus 99 ------~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 172 (351)
..+. .+.-.+.+|...|+.+.|.| ..... +++++.|-.++.||+++.. ..+....
T Consensus 95 iwnlA~ss~~--aIef~lhghsraitd~n~~~-----q~pdV------latcsvdt~vh~wd~rSp~-~p~ys~~----- 155 (1081)
T KOG0309|consen 95 IWNLAKSSSN--AIEFVLHGHSRAITDINFNP-----QHPDV------LATCSVDTYVHAWDMRSPH-RPFYSTS----- 155 (1081)
T ss_pred hhhhhcCCcc--ceEEEEecCccceeccccCC-----CCCcc------eeeccccccceeeeccCCC-cceeeee-----
Confidence 1111 22334678999999999997 33345 9999999999999999842 1222221
Q ss_pred ccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC-CCEEEEEeCCCcEEEEcC
Q 048511 173 HSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS-SDYLLSVSHDQTTRVFAP 251 (351)
Q Consensus 173 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~-~~~l~s~~~dg~i~vwd~ 251 (351)
.-......++|+-....+.+.+....|++||++.+. .++..+++|...|+.+.|..- ...+.+++.|++|+.||.
T Consensus 156 ~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs----~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y 231 (1081)
T KOG0309|consen 156 SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS----TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDY 231 (1081)
T ss_pred cccccCceeeecccCcchhhhccCCceEEEeccCCC----cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecc
Confidence 223345678998766667777788889999999876 788899999999999998763 345788899999999998
Q ss_pred CCcccccc---------------------------------------------CccceEEeccccccccceeEEEEee--
Q 048511 252 WKNVASLM---------------------------------------------GENSWHEVARPQVHGHDINCVTIIQ-- 284 (351)
Q Consensus 252 ~~~~~~~~---------------------------------------------~~~~~~~~~~~~~~~~~i~~~~~~~-- 284 (351)
........ ......++..+.+|...|....|-.
T Consensus 232 ~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~ 311 (1081)
T KOG0309|consen 232 SKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRK 311 (1081)
T ss_pred cccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcc
Confidence 65432211 0011235566677777665555532
Q ss_pred ------eCCCcEEEEecCCCeEEEEecCchhhh
Q 048511 285 ------GKGNHRFVSGADEKVARVFEAPLSFLK 311 (351)
Q Consensus 285 ------~~~~~~l~s~~~dg~v~vw~~~~~~~~ 311 (351)
......|++-+.|..+|+|-+...+..
T Consensus 312 e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~i~~ 344 (1081)
T KOG0309|consen 312 ECDGDYDSRDFQLVTWSKDQTLRLWPIDSQIQR 344 (1081)
T ss_pred cccCCCCccceeEEEeecCCceEeeeccHHHHH
Confidence 112457999999999999988755443
No 264
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.17 E-value=1.9e-08 Score=87.11 Aligned_cols=188 Identities=14% Similarity=0.062 Sum_probs=121.8
Q ss_pred ccEE-EEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCC
Q 048511 49 SILL-VSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPST 127 (351)
Q Consensus 49 ~~~l-~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~ 127 (351)
++++ ++-..++.|.+.|..+.+.+..+. .....-..+.|+
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~-----------------------------------~~~~~h~~~~~s---- 45 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIP-----------------------------------TGGAPHAGLKFS---- 45 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE------------------------------------STTEEEEEE-T----
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEc-----------------------------------CCCCceeEEEec----
Confidence 3455 455678999999998876554332 122223346788
Q ss_pred CCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-eCCeEEEEEccc
Q 048511 128 APSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNVG 206 (351)
Q Consensus 128 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~ 206 (351)
+|+++ +.+++.||.|.++|+.+ .+.+.+++. .....+++++++|++++++. .++.+.++|.++
T Consensus 46 --~Dgr~------~yv~~rdg~vsviD~~~--~~~v~~i~~------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t 109 (369)
T PF02239_consen 46 --PDGRY------LYVANRDGTVSVIDLAT--GKVVATIKV------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAET 109 (369)
T ss_dssp --T-SSE------EEEEETTSEEEEEETTS--SSEEEEEE-------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT
T ss_pred --CCCCE------EEEEcCCCeEEEEECCc--ccEEEEEec------CCCcceEEEcCCCCEEEEEecCCCceeEecccc
Confidence 79998 88899999999999999 778877763 23467899999999998776 579999999988
Q ss_pred CcccCccccccccc-------ccccEEEEEeecCCCEEEEEeC-CCcEEEEcCCCccccccCccceEEecccccccccee
Q 048511 207 VDIDNWQPQKVPSG-------HFAAVMDISWSRSSDYLLSVSH-DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDIN 278 (351)
Q Consensus 207 ~~~~~~~~~~~~~~-------~~~~v~~v~~sp~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 278 (351)
. ++++.+.. ....+.++..+|....++..-. -+.|.+.|...... . ....+ ..+....
T Consensus 110 l-----e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~-------~-~~~~i-~~g~~~~ 175 (369)
T PF02239_consen 110 L-----EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN-------L-KVTTI-KVGRFPH 175 (369)
T ss_dssp -------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC-------E-EEEEE-E--TTEE
T ss_pred c-----cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc-------c-ceeee-ccccccc
Confidence 6 34554432 2346788888898886555544 48888888766541 1 11111 2234467
Q ss_pred EEEEeeeCCCcEEEE-ecCCCeEEEEecCc
Q 048511 279 CVTIIQGKGNHRFVS-GADEKVARVFEAPL 307 (351)
Q Consensus 279 ~~~~~~~~~~~~l~s-~~~dg~v~vw~~~~ 307 (351)
...|+| ++++++. ...+..|-++|...
T Consensus 176 D~~~dp--dgry~~va~~~sn~i~viD~~~ 203 (369)
T PF02239_consen 176 DGGFDP--DGRYFLVAANGSNKIAVIDTKT 203 (369)
T ss_dssp EEEE-T--TSSEEEEEEGGGTEEEEEETTT
T ss_pred ccccCc--ccceeeecccccceeEEEeecc
Confidence 889999 8877655 45677999999873
No 265
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.15 E-value=8.1e-09 Score=92.16 Aligned_cols=161 Identities=12% Similarity=0.065 Sum_probs=106.0
Q ss_pred ccccceEEEEecCCCCCCCCCcccCCCceeEEeecC---CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCC
Q 048511 112 GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD---KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR 188 (351)
Q Consensus 112 ~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 188 (351)
.+...+....|+ ++++. |+.+..+ ..|++||+.+ +..... . .....+.+++|+|+++
T Consensus 187 ~~~~~~~~p~~S------pdg~~------la~~~~~~~~~~i~v~d~~~--g~~~~~-~-----~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 187 RSREPILSPAWS------PDGQK------LAYVSFESGKPEIYVQDLAT--GQREKV-A-----SFPGMNGAPAFSPDGS 246 (417)
T ss_pred cCCCceecccCC------CCCCE------EEEEEcCCCCcEEEEEECCC--CCEEEe-e-----cCCCCccceEECCCCC
Confidence 355568888999 78888 8877654 4799999987 433221 1 2233456789999998
Q ss_pred EEEEE-eeCC--eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-CC--cEEEEcCCCccccccCcc
Q 048511 189 SILAH-GYGG--AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-DQ--TTRVFAPWKNVASLMGEN 262 (351)
Q Consensus 189 ~l~~~-~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~ 262 (351)
.|+.. ..++ .|++||+.++. ...+..+........|+|+++.|+..+. ++ .|+++|+..++
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~------- 313 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQ------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE------- 313 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCC------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-------
Confidence 77644 4443 58888887753 2233334444556789999998876654 33 57777876554
Q ss_pred ceEEeccccccccceeEEEEeeeCCCcEEEEecCCC---eEEEEecCchhhh
Q 048511 263 SWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEK---VARVFEAPLSFLK 311 (351)
Q Consensus 263 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg---~v~vw~~~~~~~~ 311 (351)
...+ ..+........|+| ++.+|+..+.++ .|.+||+.....+
T Consensus 314 -~~~l---~~~~~~~~~~~~sp--dg~~i~~~~~~~~~~~i~~~d~~~~~~~ 359 (417)
T TIGR02800 314 -VRRL---TFRGGYNASPSWSP--DGDLIAFVHREGGGFNIAVMDLDGGGER 359 (417)
T ss_pred -EEEe---ecCCCCccCeEECC--CCCEEEEEEccCCceEEEEEeCCCCCeE
Confidence 1122 22334567789999 888888887765 7888887754333
No 266
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.13 E-value=2.6e-10 Score=88.76 Aligned_cols=150 Identities=14% Similarity=0.142 Sum_probs=99.1
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-----eCCeEEEEEcccCcccCcccc
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-----YGGAFHLWRNVGVDIDNWQPQ 215 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-----~dg~i~~~d~~~~~~~~~~~~ 215 (351)
++++..||.+.+++.+. .......+. .....-.+.+....++.+.++. .-+..+.|+++..+ ...
T Consensus 104 V~~~~~dg~~~v~s~~~-~~~~~~~i~-----~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~----t~~ 173 (319)
T KOG4714|consen 104 VCIGYADGSLAVFSTDK-DLALMSRIP-----SIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIK----TLI 173 (319)
T ss_pred eEecCCCceEEEEechH-HHhhhhhcc-----cccccccccceeecccEEecCCcceEeeccceeeecccccc----ccc
Confidence 89999999999999875 111111111 1111112223333444444332 12345666665432 111
Q ss_pred cccccccccEEEEEeecCC-CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEe
Q 048511 216 KVPSGHFAAVMDISWSRSS-DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSG 294 (351)
Q Consensus 216 ~~~~~~~~~v~~v~~sp~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~ 294 (351)
...+ ....|.+++-+|.. +++++|+.||.+-+||.++.. .+...+..|..+|+.+-|+| .++..|.++
T Consensus 174 ~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~---------~p~S~l~ahk~~i~eV~FHp-k~p~~Lft~ 242 (319)
T KOG4714|consen 174 PSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA---------MPVSLLKAHKAEIWEVHFHP-KNPEHLFTC 242 (319)
T ss_pred cccc-ccccchhhhCCcccccEEEEecCCCeEEEEEccccc---------chHHHHHHhhhhhhheeccC-CCchheeEe
Confidence 1111 12348999999854 567788899999999999886 26677789999999999999 578999999
Q ss_pred cCCCeEEEEecCchhhh
Q 048511 295 ADEKVARVFEAPLSFLK 311 (351)
Q Consensus 295 ~~dg~v~vw~~~~~~~~ 311 (351)
++||.+--||.++.++.
T Consensus 243 sedGslw~wdas~~~l~ 259 (319)
T KOG4714|consen 243 SEDGSLWHWDASTTFLS 259 (319)
T ss_pred cCCCcEEEEcCCCceEE
Confidence 99999999998876554
No 267
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.11 E-value=1.1e-07 Score=91.42 Aligned_cols=234 Identities=13% Similarity=0.161 Sum_probs=153.8
Q ss_pred CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEE----ecCCCcccceeecccccceeeeEeeecCCeEEecCCceeE
Q 048511 29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIW----KLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQV 104 (351)
Q Consensus 29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 104 (351)
.+.|.++.|. ++...++.+..+|.|.+. +... ...+........+.+++|+||+..++.....+.+
T Consensus 75 ~~~ivs~~yl--------~d~~~l~~~~~~Gdi~~~~~~~~~~~--~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l 144 (928)
T PF04762_consen 75 NDKIVSFQYL--------ADSESLCIALASGDIILVREDPDPDE--DEIEIVGSVDSGILAASWSPDEELLALVTGEGNL 144 (928)
T ss_pred CCcEEEEEec--------cCCCcEEEEECCceEEEEEccCCCCC--ceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEE
Confidence 3578888888 777788888889999988 4333 2233333446789999999999999887655544
Q ss_pred EEEE-------------------------------eccc------------------------cccceEEEEecCCCCCC
Q 048511 105 SVES-------------------------------LLIG------------------------HEDWVYSVQWEPPSTAP 129 (351)
Q Consensus 105 ~~~~-------------------------------~~~~------------------------h~~~v~~l~~~p~~~~~ 129 (351)
.+.. .+.| +.+.-..++|-
T Consensus 145 ~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWR------ 218 (928)
T PF04762_consen 145 LLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWR------ 218 (928)
T ss_pred EEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEEC------
Confidence 2111 0110 22234567788
Q ss_pred CCCcccCCCceeEEeec---C---CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee---CCeEE
Q 048511 130 SDGVSCQQPSSILSASM---D---KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY---GGAFH 200 (351)
Q Consensus 130 ~~~~~~~~~~~l~s~~~---d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---dg~i~ 200 (351)
.||.+ ||+.+. . +.++||+-+ |....+.. .-.+--.+++|.|.|++||+.-. ...|.
T Consensus 219 GDG~y------FAVss~~~~~~~~R~iRVy~Re---G~L~stSE-----~v~gLe~~l~WrPsG~lIA~~q~~~~~~~Vv 284 (928)
T PF04762_consen 219 GDGEY------FAVSSVEPETGSRRVIRVYSRE---GELQSTSE-----PVDGLEGALSWRPSGNLIASSQRLPDRHDVV 284 (928)
T ss_pred CCCcE------EEEEEEEcCCCceeEEEEECCC---ceEEeccc-----cCCCccCCccCCCCCCEEEEEEEcCCCcEEE
Confidence 89998 988875 2 578999876 43332222 11222346899999999998775 35677
Q ss_pred EEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccc-cceeE
Q 048511 201 LWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHG-HDINC 279 (351)
Q Consensus 201 ~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~ 279 (351)
+|.-+.-+...|... +......|..+.|++++..||..-.|. |.+|-..+. .|.....+.... ..+..
T Consensus 285 FfErNGLrhgeF~l~--~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY--------HWYLKqei~~~~~~~~~~ 353 (928)
T PF04762_consen 285 FFERNGLRHGEFTLR--FDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY--------HWYLKQEIRFSSSESVNF 353 (928)
T ss_pred EEecCCcEeeeEecC--CCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC--------EEEEEEEEEccCCCCCCc
Confidence 776655443333222 223456799999999999999877665 999988665 466655544332 23556
Q ss_pred EEEeeeCCCcEEEEecCCCeEEEEe
Q 048511 280 VTIIQGKGNHRFVSGADEKVARVFE 304 (351)
Q Consensus 280 ~~~~~~~~~~~l~s~~~dg~v~vw~ 304 (351)
+.|+| .+...|.....+|.+..++
T Consensus 354 ~~Wdp-e~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 354 VKWDP-EKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred eEECC-CCCCEEEEEecCCcEEEEE
Confidence 99999 3566677776666665544
No 268
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=4.3e-09 Score=93.13 Aligned_cols=135 Identities=19% Similarity=0.298 Sum_probs=101.5
Q ss_pred CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEE
Q 048511 29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES 108 (351)
Q Consensus 29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 108 (351)
.....|++|+ ....++|.||.||.+++-.+.+...-..... |+. ...+..-+
T Consensus 14 nvkL~c~~WN--------ke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-----------------laa---~snLsmNQ 65 (1189)
T KOG2041|consen 14 NVKLHCAEWN--------KESGYIACGGADGLLKVLKLGTDTTDLNKSG-----------------LAA---ASNLSMNQ 65 (1189)
T ss_pred CceEEEEEEc--------ccCCeEEeccccceeEEEEccccCCcccccc-----------------ccc---ccccchhh
Confidence 3467899999 8889999999999999999876543211110 000 11223446
Q ss_pred eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCC
Q 048511 109 LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR 188 (351)
Q Consensus 109 ~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 188 (351)
++.||...|..+.|+ .+.+. |-+...+|.|.+|-+-. +.+...+. .....+.|.+++|+.+|.
T Consensus 66 tLeGH~~sV~vvTWN------e~~QK------LTtSDt~GlIiVWmlyk--gsW~EEMi---NnRnKSvV~SmsWn~dG~ 128 (1189)
T KOG2041|consen 66 TLEGHNASVMVVTWN------ENNQK------LTTSDTSGLIIVWMLYK--GSWCEEMI---NNRNKSVVVSMSWNLDGT 128 (1189)
T ss_pred hhccCcceEEEEEec------ccccc------ccccCCCceEEEEeeec--ccHHHHHh---hCcCccEEEEEEEcCCCc
Confidence 789999999999999 66667 89999999999999988 76655443 234566789999999999
Q ss_pred EEEEEeeCCeEEEEEcccCc
Q 048511 189 SILAHGYGGAFHLWRNVGVD 208 (351)
Q Consensus 189 ~l~~~~~dg~i~~~d~~~~~ 208 (351)
.++....||.|.+=.++.++
T Consensus 129 kIcIvYeDGavIVGsvdGNR 148 (1189)
T KOG2041|consen 129 KICIVYEDGAVIVGSVDGNR 148 (1189)
T ss_pred EEEEEEccCCEEEEeeccce
Confidence 99999889888777666543
No 269
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.10 E-value=1.9e-07 Score=76.63 Aligned_cols=234 Identities=13% Similarity=0.089 Sum_probs=143.8
Q ss_pred CCcEEEEecCCCcc-c-ceeecccccceeeeEeeecCCeEEecCCc---------------eeEEEEEeccccccceEEE
Q 048511 58 DKVIRIWKLALRGS-S-ANTQSTYRKEVISLASYIEGPVLVAGSSS---------------YQVSVESLLIGHEDWVYSV 120 (351)
Q Consensus 58 dg~i~iwd~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~~~~~~~h~~~v~~l 120 (351)
++-|.+|++.+..- + ............-++++++++.|.++... +.+.+......-..+-+-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 45699999984322 2 12222334577788999999888775433 2223332222222334678
Q ss_pred EecCCCCCCCCCcccCCCceeEEeec-CCeEEEEeccCCCcceEEEEEecccccccc----------ceEEEEEcCCCCE
Q 048511 121 QWEPPSTAPSDGVSCQQPSSILSASM-DKTMMIWQPEKTTGIWMNVVTVGELSHSAL----------GFYGGHWSPDGRS 189 (351)
Q Consensus 121 ~~~p~~~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~----------~i~~i~~~~~~~~ 189 (351)
+++ +++++ ++++.. .|.|.++-++.. |......... .|.. -+-...+.|++++
T Consensus 95 svd------~~g~~------vf~AnY~~g~v~v~p~~~d-G~l~~~v~~~---~h~g~~p~~rQ~~~h~H~a~~tP~~~~ 158 (346)
T COG2706 95 SVD------EDGRF------VFVANYHSGSVSVYPLQAD-GSLQPVVQVV---KHTGSGPHERQESPHVHSANFTPDGRY 158 (346)
T ss_pred EEC------CCCCE------EEEEEccCceEEEEEcccC-Cccccceeee---ecCCCCCCccccCCccceeeeCCCCCE
Confidence 888 78887 777654 688999999763 3332222211 1222 2778899999999
Q ss_pred EEEEeeC-CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-CCcEEEEcCCCccccccCccceEEe
Q 048511 190 ILAHGYG-GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-DQTTRVFAPWKNVASLMGENSWHEV 267 (351)
Q Consensus 190 l~~~~~d-g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~ 267 (351)
|++.... ..|.+|++..+........ .+ ......+-|.|+|++++....++ +++|.+|........ ...++.+
T Consensus 159 l~v~DLG~Dri~~y~~~dg~L~~~~~~-~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~---~~~lQ~i 233 (346)
T COG2706 159 LVVPDLGTDRIFLYDLDDGKLTPADPA-EV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK---FEELQTI 233 (346)
T ss_pred EEEeecCCceEEEEEcccCcccccccc-cc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce---EEEeeee
Confidence 9988744 6799999987654322222 22 23445688999999999877665 899999999874211 1222222
Q ss_pred ccccc---cccceeEEEEeeeCCCcEEEEec-CCCeEEEEecC--chhhhcee
Q 048511 268 ARPQV---HGHDINCVTIIQGKGNHRFVSGA-DEKVARVFEAP--LSFLKTLN 314 (351)
Q Consensus 268 ~~~~~---~~~~i~~~~~~~~~~~~~l~s~~-~dg~v~vw~~~--~~~~~~~~ 314 (351)
..+.. -......+.+++ ||++|.++. ....|-+|.+. +..+..+.
T Consensus 234 ~tlP~dF~g~~~~aaIhis~--dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~ 284 (346)
T COG2706 234 DTLPEDFTGTNWAAAIHISP--DGRFLYASNRGHDSIAVFSVDPDGGKLELVG 284 (346)
T ss_pred ccCccccCCCCceeEEEECC--CCCEEEEecCCCCeEEEEEEcCCCCEEEEEE
Confidence 22211 123356677777 899887776 34578888865 44444333
No 270
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=5.2e-08 Score=83.94 Aligned_cols=259 Identities=11% Similarity=0.072 Sum_probs=157.1
Q ss_pred ceEEEEEccCCCceEEEEeeee--cCCcee-EEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccc
Q 048511 6 NKIHLYRGQRTGKFVRACELKG--HTDWIR-SLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKE 82 (351)
Q Consensus 6 g~i~vw~~~~~~~~~~~~~~~~--h~~~V~-~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 82 (351)
..++|||+.+ |.. ...+.. -...++ -..|+ .+++++|--..| .|.|++......+ .........
T Consensus 282 ~~l~IWDI~t-G~l--krsF~~~~~~~~~WP~frWS--------~DdKy~Arm~~~-sisIyEtpsf~ll-d~Kslki~g 348 (698)
T KOG2314|consen 282 QQLIIWDIAT-GLL--KRSFPVIKSPYLKWPIFRWS--------HDDKYFARMTGN-SISIYETPSFMLL-DKKSLKISG 348 (698)
T ss_pred ceEEEEEccc-cch--hcceeccCCCccccceEEec--------cCCceeEEeccc-eEEEEecCceeee-cccccCCcc
Confidence 5799999999 744 334433 222333 35799 889999987764 6889988764322 222233457
Q ss_pred eeeeEeeecCCeEEecCCce-----eEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEe-----
Q 048511 83 VISLASYIEGPVLVAGSSSY-----QVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSA----- 144 (351)
Q Consensus 83 ~~~~~~~~~~~~l~~~~~~~-----~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~----- 144 (351)
+....|+|.+.+|+...... .+.+.. ...-|.-.=..+.|- .+|.+ |+.-
T Consensus 349 Ir~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQ------k~gdy------LcvkvdR~t 416 (698)
T KOG2314|consen 349 IRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQ------KSGDY------LCVKVDRHT 416 (698)
T ss_pred ccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEec------cCCcE------EEEEEEeec
Confidence 88889999999988754221 111111 111111111234444 45554 4432
Q ss_pred -----ecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee---CCeEEEEEcccCcccCccccc
Q 048511 145 -----SMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY---GGAFHLWRNVGVDIDNWQPQK 216 (351)
Q Consensus 145 -----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~~ 216 (351)
+.-..+-|+.++.. ...+..+ .-...|...+|.|.|..+++-+. ..++.+|-+++.. ..+.++.
T Consensus 417 K~~~~g~f~n~eIfrireK-dIpve~v------elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~-~~~~lVk 488 (698)
T KOG2314|consen 417 KSKVKGQFSNLEIFRIREK-DIPVEVV------ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI-KKPSLVK 488 (698)
T ss_pred cccccceEeeEEEEEeecc-CCCceee------ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC-Cchhhhh
Confidence 11223556666542 1222222 23446888999999987766543 3679999988532 2235566
Q ss_pred ccccccccEEEEEeecCCCEEEEEe---CCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEE
Q 048511 217 VPSGHFAAVMDISWSRSSDYLLSVS---HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVS 293 (351)
Q Consensus 217 ~~~~~~~~v~~v~~sp~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s 293 (351)
.+.. ...+.+.|+|.|++++.+. ..|.+..+|+..... +.+... .| ...+.+.|.| .|+++++
T Consensus 489 ~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~--------k~~~~~-eh-~~at~veWDP--tGRYvvT 554 (698)
T KOG2314|consen 489 ELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADL--------KDTASP-EH-FAATEVEWDP--TGRYVVT 554 (698)
T ss_pred hhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhh--------hhccCc-cc-cccccceECC--CCCEEEE
Confidence 6654 4567899999999987664 578999999865321 122221 23 2368899999 8999999
Q ss_pred ecCC------CeEEEEecCchhhh
Q 048511 294 GADE------KVARVFEAPLSFLK 311 (351)
Q Consensus 294 ~~~d------g~v~vw~~~~~~~~ 311 (351)
++.- .--++|+..|..++
T Consensus 555 ~ss~wrhk~d~GYri~tfqGrll~ 578 (698)
T KOG2314|consen 555 SSSSWRHKVDNGYRIFTFQGRLLK 578 (698)
T ss_pred eeehhhhccccceEEEEeecHHHH
Confidence 8754 44578888877664
No 271
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=8.4e-08 Score=82.75 Aligned_cols=214 Identities=16% Similarity=0.243 Sum_probs=136.5
Q ss_pred CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEE-----eeCCCcEEEEecCCCcc--cceeec
Q 048511 5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVS-----SSQDKVIRIWKLALRGS--SANTQS 77 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t-----~~~dg~i~iwd~~~~~~--~~~~~~ 77 (351)
.+.+++|+..... .... +-|...|+.+.++|. +....+|+ .|.=+.|+||....... ......
T Consensus 145 ~nev~f~~~~~f~--~~~~--kl~~~~i~~f~lSpg------p~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ks 214 (566)
T KOG2315|consen 145 SNEVQFYDLGSFK--TIQH--KLSVSGITMLSLSPG------PEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKS 214 (566)
T ss_pred cceEEEEecCCcc--ceee--eeeccceeeEEecCC------CCCceEEEEccCCCCCCcEEEEeccccccccchhhhcc
Confidence 3568888877611 2222 336788999999932 22335553 24556799999873322 222233
Q ss_pred ccccceeeeEeeecCCeEEe-cCC--c---------eeEEEEEec-------cccccceEEEEecCCCCCCCCCcccCCC
Q 048511 78 TYRKEVISLASYIEGPVLVA-GSS--S---------YQVSVESLL-------IGHEDWVYSVQWEPPSTAPSDGVSCQQP 138 (351)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~-~~~--~---------~~~~~~~~~-------~~h~~~v~~l~~~p~~~~~~~~~~~~~~ 138 (351)
.....-..+.|.+-|.-|++ ... | ..+.++..- ....++|.++.|+ ++++-
T Consensus 215 FFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~------~s~~E---- 284 (566)
T KOG2315|consen 215 FFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWS------PSGRE---- 284 (566)
T ss_pred ccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEEC------CCCCE----
Confidence 33456667778776663333 111 1 111222111 1236899999999 55544
Q ss_pred ceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC---CeEEEEEcccCcccCcccc
Q 048511 139 SSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG---GAFHLWRNVGVDIDNWQPQ 215 (351)
Q Consensus 139 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~ 215 (351)
.-++.|-.-..+.|||++ +..+..+ .+++=.++-|+|.|++++.++.+ |.+-+||..+. +++
T Consensus 285 F~VvyGfMPAkvtifnlr---~~~v~df-------~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~-----K~i 349 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLR---GKPVFDF-------PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR-----KLI 349 (566)
T ss_pred EEEEEecccceEEEEcCC---CCEeEeC-------CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch-----hhc
Confidence 014455667889999998 4444433 23455788999999999988865 89999999884 567
Q ss_pred cccccccccEEEEEeecCCCEEEEEeC------CCcEEEEcCCCcc
Q 048511 216 KVPSGHFAAVMDISWSRSSDYLLSVSH------DQTTRVFAPWKNV 255 (351)
Q Consensus 216 ~~~~~~~~~v~~v~~sp~~~~l~s~~~------dg~i~vwd~~~~~ 255 (351)
..+..... +-..|+|||++|+|++. |+.++||++....
T Consensus 350 ~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 350 AKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred cccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence 77765543 44789999999998874 7889999985543
No 272
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=3e-10 Score=91.90 Aligned_cols=156 Identities=10% Similarity=0.064 Sum_probs=113.4
Q ss_pred EEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccc
Q 048511 142 LSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH 221 (351)
Q Consensus 142 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~ 221 (351)
++.+.+-.|-+-|++++-++ .+ ...+.|.++.|...++.+..|+.+|.|..+|++........+...+. |
T Consensus 228 fs~G~sqqv~L~nvetg~~q---sf------~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h 297 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ---SF------QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-H 297 (425)
T ss_pred ecccccceeEEEEeeccccc---cc------ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-c
Confidence 44556677888888873211 11 24556888889888999999999999999999876333234444444 8
Q ss_pred cccEEEEEeec-CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeE
Q 048511 222 FAAVMDISWSR-SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVA 300 (351)
Q Consensus 222 ~~~v~~v~~sp-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v 300 (351)
.+.|+++..-. ++++|++.+.+|.|.+||.+..++ -+.+..+.+|-..-.-+-++-.+....++++++|...
T Consensus 298 ~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~-------~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 298 DSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC-------KKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYT 370 (425)
T ss_pred CcchhhhhhhccccceEeeccCcCceeEeeehhhhc-------ccceeeeecccccccccccccccccceEEEccCeeEE
Confidence 88999987766 778899999999999999987762 1246777788544333333322367788999999999
Q ss_pred EEEecC-chhhhcee
Q 048511 301 RVFEAP-LSFLKTLN 314 (351)
Q Consensus 301 ~vw~~~-~~~~~~~~ 314 (351)
|||.+. +..+.++.
T Consensus 371 RiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIP 385 (425)
T ss_pred EEEecccCceeeccC
Confidence 999998 77766654
No 273
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.07 E-value=5.8e-08 Score=76.28 Aligned_cols=234 Identities=10% Similarity=0.043 Sum_probs=144.3
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK 81 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~ 81 (351)
|+.-|...+|...+ ++ ........|...|+-+.-. | ...-.+..++.|.++++.++..+....
T Consensus 90 gG~~g~fd~~~~~t-n~-~h~~~cd~snn~v~~~~r~---c----d~~~~~~i~sndht~k~~~~~~~s~~~-------- 152 (344)
T KOG4532|consen 90 GGASGQFDLFACNT-ND-GHLYQCDVSNNDVTLVKRY---C----DLKFPLNIASNDHTGKTMVVSGDSNKF-------- 152 (344)
T ss_pred ccccceeeeecccC-cc-cceeeecccccchhhhhhh---c----ccccceeeccCCcceeEEEEecCcccc--------
Confidence 56677778887775 21 1222333344433322211 0 123346667888888888876543211
Q ss_pred ceeeeEeeecCCeEEecCCceeEEEEEecccccc--ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCC
Q 048511 82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHED--WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTT 159 (351)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~--~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 159 (351)
..|.. .+.+++++ +++++ +++.+....|-.|.+...
T Consensus 153 -----------------------------~~h~~~~~~ns~~~s------nd~~~------~~~Vgds~~Vf~y~id~~- 190 (344)
T KOG4532|consen 153 -----------------------------AVHNQNLTQNSLHYS------NDPSW------GSSVGDSRRVFRYAIDDE- 190 (344)
T ss_pred -----------------------------eeeccccceeeeEEc------CCCce------EEEecCCCcceEEEeCCc-
Confidence 11222 27788999 78898 999999999999999864
Q ss_pred cceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCC--EE
Q 048511 160 GIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSD--YL 237 (351)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~--~l 237 (351)
++.+..+... ..+..-.+..|+.....+|++..||++.|||++.........-.+-..|.+.++.+.|++.|. +|
T Consensus 191 sey~~~~~~a---~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLL 267 (344)
T KOG4532|consen 191 SEYIENIYEA---PTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLL 267 (344)
T ss_pred cceeeeeEec---ccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEE
Confidence 3333333322 233345688999999999999999999999998754322222233445889999999998664 34
Q ss_pred EEEeCCCcEEEEcCCCccccccCccceEEecc----ccccc-cceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511 238 LSVSHDQTTRVFAPWKNVASLMGENSWHEVAR----PQVHG-HDINCVTIIQGKGNHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 238 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~-~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 307 (351)
+..-.-+.+.|.|+++....+ .+.. +..|. ..|..-.|+. ++.-+.+..++ .+.-|++..
T Consensus 268 f~sEhfs~~hv~D~R~~~~~q-------~I~i~~d~~~~~~tq~ifgt~f~~--~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 268 FISEHFSRVHVVDTRNYVNHQ-------VIVIPDDVERKHNTQHIFGTNFNN--ENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred EEecCcceEEEEEcccCceee-------EEecCccccccccccccccccccC--CCcccccccch-hhheeeccc
Confidence 544456889999999987432 2211 11232 2367777776 55555555444 334555543
No 274
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.07 E-value=2.2e-09 Score=103.67 Aligned_cols=167 Identities=12% Similarity=0.146 Sum_probs=131.5
Q ss_pred ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEE
Q 048511 112 GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSIL 191 (351)
Q Consensus 112 ~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 191 (351)
.+-..|.++.-+ |...+ .++|+.||.|++|.... +..+..++. .+. ..++.+.|+.+|+.+.
T Consensus 2206 ~~v~~v~r~~sH------p~~~~------Yltgs~dgsv~~~~w~~--~~~v~~~rt---~g~-s~vtr~~f~~qGnk~~ 2267 (2439)
T KOG1064|consen 2206 HPVENVRRMTSH------PSDPY------YLTGSQDGSVRMFEWGH--GQQVVCFRT---AGN-SRVTRSRFNHQGNKFG 2267 (2439)
T ss_pred cccCceeeecCC------CCCce------EEecCCCceEEEEeccC--CCeEEEeec---cCc-chhhhhhhcccCCcee
Confidence 344567777777 44455 89999999999999988 666666552 233 7899999999999999
Q ss_pred EEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe---CCCcEEEEcCCCccccccCccceEEec
Q 048511 192 AHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS---HDQTTRVFAPWKNVASLMGENSWHEVA 268 (351)
Q Consensus 192 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~ 268 (351)
.+..||.+.+|.... ++....+.|......+.|-. ..+++++ .++.+.+||..-... .+ .+.
T Consensus 2268 i~d~dg~l~l~q~~p------k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~------~s-~v~ 2332 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQASP------KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPM------NS-LVH 2332 (2439)
T ss_pred eeccCCceeecccCC------cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcc------cc-eee
Confidence 999999999998874 56777788988888888875 4566654 478999999765431 11 233
Q ss_pred cccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceee
Q 048511 269 RPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNH 315 (351)
Q Consensus 269 ~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~ 315 (351)
..|.+.++++++.| ..++|++||.+|.|.+||+. .+.+.+++.
T Consensus 2333 --~~H~~gaT~l~~~P--~~qllisggr~G~v~l~D~rqrql~h~~~~ 2376 (2439)
T KOG1064|consen 2333 --TCHDGGATVLAYAP--KHQLLISGGRKGEVCLFDIRQRQLRHTFQA 2376 (2439)
T ss_pred --eecCCCceEEEEcC--cceEEEecCCcCcEEEeehHHHHHHHHhhh
Confidence 68999999999999 89999999999999999988 566666665
No 275
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.06 E-value=5e-08 Score=87.35 Aligned_cols=163 Identities=15% Similarity=0.128 Sum_probs=102.3
Q ss_pred ccccceEEEEecCCCCCCCCCcccCCCceeEEeecC---CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCC
Q 048511 112 GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD---KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR 188 (351)
Q Consensus 112 ~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 188 (351)
.+...+....|+ ||++. |+..+.+ ..|.+||+.+ +.... +. .....+....|+|+|+
T Consensus 196 ~~~~~~~~p~wS------pDG~~------la~~s~~~~~~~l~~~~l~~--g~~~~-l~-----~~~g~~~~~~~SpDG~ 255 (430)
T PRK00178 196 QSREPILSPRWS------PDGKR------IAYVSFEQKRPRIFVQNLDT--GRREQ-IT-----NFEGLNGAPAWSPDGS 255 (430)
T ss_pred cCCCceeeeeEC------CCCCE------EEEEEcCCCCCEEEEEECCC--CCEEE-cc-----CCCCCcCCeEECCCCC
Confidence 356678899999 78887 8776543 3688999987 43322 11 1222345689999999
Q ss_pred EEEE-EeeCC--eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-CC--cEEEEcCCCccccccCcc
Q 048511 189 SILA-HGYGG--AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-DQ--TTRVFAPWKNVASLMGEN 262 (351)
Q Consensus 189 ~l~~-~~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~ 262 (351)
.|+. ...++ .|++||+.++. ...+..+........|+|||+.|+..+. ++ .|+++|+.+++.
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~~------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~------ 323 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASRQ------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA------ 323 (430)
T ss_pred EEEEEEccCCCceEEEEECCCCC------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE------
Confidence 8874 44444 68888988764 2333344455667889999998766553 33 577777766541
Q ss_pred ceEEeccccccccceeEEEEeeeCCCcEEEEecC-CC--eEEEEecCchhhhce
Q 048511 263 SWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD-EK--VARVFEAPLSFLKTL 313 (351)
Q Consensus 263 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-dg--~v~vw~~~~~~~~~~ 313 (351)
..+. . ........+|+| ++++|+..+. ++ .|.+||+.+...+.+
T Consensus 324 --~~lt-~--~~~~~~~~~~Sp--dg~~i~~~~~~~~~~~l~~~dl~tg~~~~l 370 (430)
T PRK00178 324 --ERVT-F--VGNYNARPRLSA--DGKTLVMVHRQDGNFHVAAQDLQRGSVRIL 370 (430)
T ss_pred --EEee-c--CCCCccceEECC--CCCEEEEEEccCCceEEEEEECCCCCEEEc
Confidence 1221 1 112234568999 8888876653 33 578888874433333
No 276
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.05 E-value=4.5e-09 Score=81.98 Aligned_cols=120 Identities=17% Similarity=0.238 Sum_probs=84.0
Q ss_pred ceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec-CCCEEEEEeCCCcEEEEcCCCc
Q 048511 177 GFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR-SSDYLLSVSHDQTTRVFAPWKN 254 (351)
Q Consensus 177 ~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~s~~~dg~i~vwd~~~~ 254 (351)
.|.+++-+|..+ .+++|+.||.+-+||.+... .+...+..|+.+|+.+-|+| ++..|+++++||.+..||..+.
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~----~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~ 256 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA----MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTT 256 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEccccc----chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCc
Confidence 388899999655 66777788999999998873 67888899999999999999 5678999999999999998642
Q ss_pred ccccc----CccceE---------Eecc-ccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511 255 VASLM----GENSWH---------EVAR-PQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE 304 (351)
Q Consensus 255 ~~~~~----~~~~~~---------~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~ 304 (351)
-.... ....|- .+.. +......|+.+.. -|..|++|++-+.|++.+
T Consensus 257 ~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV----~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 257 FLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV----LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred eEEecCccccccccccCCcccceEeeeccccccceeeeeeec----cCceEEeccccceEEEec
Confidence 21100 001111 1111 1111123555444 367899999999998875
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.04 E-value=2.5e-07 Score=90.60 Aligned_cols=239 Identities=11% Similarity=0.074 Sum_probs=142.9
Q ss_pred CccEEEEeeCCCcEEEEecCCCcccceeec-c------------cccceeeeEeeecCCeEEecCC-ceeEEEEE-----
Q 048511 48 ISILLVSSSQDKVIRIWKLALRGSSANTQS-T------------YRKEVISLASYIEGPVLVAGSS-SYQVSVES----- 108 (351)
Q Consensus 48 ~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~-~------------~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~----- 108 (351)
++.++++-+..+.|++||..... ...... . .-.....+++.+++..+++++. ...++.+.
T Consensus 579 ~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~ 657 (1057)
T PLN02919 579 NNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNET 657 (1057)
T ss_pred CCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE
Confidence 45677777788899999986432 211111 0 0123567888888876666443 33333222
Q ss_pred --ecccc-----------------ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEec
Q 048511 109 --LLIGH-----------------EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVG 169 (351)
Q Consensus 109 --~~~~h-----------------~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 169 (351)
.+.+- -.....++++| .++.+ +++.+.++.|++||... +... .+.-.
T Consensus 658 V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp-----~~g~L------yVad~~~~~I~v~d~~~--g~v~-~~~G~ 723 (1057)
T PLN02919 658 VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEP-----VNEKV------YIAMAGQHQIWEYNISD--GVTR-VFSGD 723 (1057)
T ss_pred EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEec-----CCCeE------EEEECCCCeEEEEECCC--CeEE-EEecC
Confidence 11110 01235788884 25666 78888889999999876 4322 11100
Q ss_pred ----ccc------ccccceEEEEEcCCCCEEEEE-eeCCeEEEEEcccCcccCc--------cccccccc--------cc
Q 048511 170 ----ELS------HSALGFYGGHWSPDGRSILAH-GYGGAFHLWRNVGVDIDNW--------QPQKVPSG--------HF 222 (351)
Q Consensus 170 ----~~~------~~~~~i~~i~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~--------~~~~~~~~--------~~ 222 (351)
... ..-.....++++|+++.|+++ ..++.|++||+.++..... .....+-. .-
T Consensus 724 G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l 803 (1057)
T PLN02919 724 GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL 803 (1057)
T ss_pred CccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence 000 011235679999999855554 4568999999976531100 00001100 11
Q ss_pred ccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEec--------cccccccceeEEEEeeeCCCcEEEEe
Q 048511 223 AAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVA--------RPQVHGHDINCVTIIQGKGNHRFVSG 294 (351)
Q Consensus 223 ~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------~~~~~~~~i~~~~~~~~~~~~~l~s~ 294 (351)
....+++++++|.++++-..++.|++||..++... ...... ...+.......+++++ +|+++++-
T Consensus 804 ~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~-----tiaG~G~~G~~dG~~~~a~l~~P~GIavd~--dG~lyVaD 876 (1057)
T PLN02919 804 QHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT-----TLAGTGKAGFKDGKALKAQLSEPAGLALGE--NGRLFVAD 876 (1057)
T ss_pred cCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE-----EEeccCCcCCCCCcccccccCCceEEEEeC--CCCEEEEE
Confidence 13468899999998888888999999999776521 100000 0111223478899998 89999999
Q ss_pred cCCCeEEEEecCch
Q 048511 295 ADEKVARVFEAPLS 308 (351)
Q Consensus 295 ~~dg~v~vw~~~~~ 308 (351)
+.++.|++||+...
T Consensus 877 t~Nn~Irvid~~~~ 890 (1057)
T PLN02919 877 TNNSLIRYLDLNKG 890 (1057)
T ss_pred CCCCEEEEEECCCC
Confidence 99999999998743
No 278
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.02 E-value=8.4e-09 Score=82.60 Aligned_cols=239 Identities=10% Similarity=0.103 Sum_probs=148.5
Q ss_pred CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEE
Q 048511 29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES 108 (351)
Q Consensus 29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 108 (351)
.+.|+++.|. ..|.+|+||...|.|.++.-....... . +...
T Consensus 26 ad~ItaVefd--------~tg~YlatGDkgGRVvlfer~~s~~ce-y-----------------------------kf~t 67 (460)
T COG5170 26 ADKITAVEFD--------ETGLYLATGDKGGRVVLFEREKSYGCE-Y-----------------------------KFFT 67 (460)
T ss_pred cceeeEEEec--------cccceEeecCCCceEEEeecccccccc-h-----------------------------hhhh
Confidence 4679999999 889999999999999998765432110 0 1111
Q ss_pred ecccc------------ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceE-------------
Q 048511 109 LLIGH------------EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWM------------- 163 (351)
Q Consensus 109 ~~~~h------------~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~------------- 163 (351)
.+++| ...|..+.|.. ++. +..++..+.|.+|++|.+....-+.+
T Consensus 68 eFQshe~EFDYLkSleieEKin~I~w~~------~t~----r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~ 137 (460)
T COG5170 68 EFQSHELEFDYLKSLEIEEKINAIEWFD------DTG----RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPM 137 (460)
T ss_pred hhcccccchhhhhhccHHHHhhheeeec------CCC----cceEEEecCCceeeeeeeecccchhhhcccccccccccc
Confidence 22333 23578888883 322 23377778999999999876311000
Q ss_pred -------EEEEecc----------------ccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc
Q 048511 164 -------NVVTVGE----------------LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG 220 (351)
Q Consensus 164 -------~~~~~~~----------------~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 220 (351)
+.+.+.. ...|..-|.++.|+.|...++++ .|-.|.+|++.-.... ..+..++.
T Consensus 138 ~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~s--FnIVDiKP 214 (460)
T COG5170 138 GGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGS--FNIVDIKP 214 (460)
T ss_pred CCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCc--eEEEeccC
Confidence 0000000 13566678899998888777654 5778999998654210 11222333
Q ss_pred c-----cccEEEEEeecCC-CEEEEEeCCCcEEEEcCCCccccccCccceEEe------ccccccccceeEEEEeeeCCC
Q 048511 221 H-----FAAVMDISWSRSS-DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEV------ARPQVHGHDINCVTIIQGKGN 288 (351)
Q Consensus 221 ~-----~~~v~~v~~sp~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~~~~~~~ 288 (351)
| ..-|++..|+|.. ..+.-.+..|.|++-|++.........+.+... .-+......|..+.|++ +|
T Consensus 215 ~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~--ng 292 (460)
T COG5170 215 HNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSD--NG 292 (460)
T ss_pred ccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcC--CC
Confidence 3 2358888999954 455666778999999998543221101111111 01112234589999999 88
Q ss_pred cEEEEecCCCeEEEEecC--chhhhceeecccccc
Q 048511 289 HRFVSGADEKVARVFEAP--LSFLKTLNHATFQES 321 (351)
Q Consensus 289 ~~l~s~~~dg~v~vw~~~--~~~~~~~~~~~~~~~ 321 (351)
++|++-+. -+|++||++ .+.++++.-|+....
T Consensus 293 ryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~ 326 (460)
T COG5170 293 RYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMD 326 (460)
T ss_pred cEEEEecc-ceEEEEecccccCCceeechHHHHHH
Confidence 88887754 489999976 778888877764433
No 279
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=1.3e-07 Score=84.03 Aligned_cols=116 Identities=15% Similarity=0.087 Sum_probs=73.1
Q ss_pred eEEEEecCCCCCCCCCcccCCCceeEEee-cCCeEEEEeccCC-CcceEEEEEeccccccccceEEEEEcCCCCEEEEEe
Q 048511 117 VYSVQWEPPSTAPSDGVSCQQPSSILSAS-MDKTMMIWQPEKT-TGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG 194 (351)
Q Consensus 117 v~~l~~~p~~~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 194 (351)
.....|+ |||+. |+..+ .+|...+|.+... .+.....+. .....+....|+|+|+.|+..+
T Consensus 283 ~~~p~wS------PDG~~------Laf~s~~~g~~~ly~~~~~~~g~~~~~lt-----~~~~~~~~p~wSPDG~~Laf~~ 345 (428)
T PRK01029 283 QGNPSFS------PDGTR------LVFVSNKDGRPRIYIMQIDPEGQSPRLLT-----KKYRNSSCPAWSPDGKKIAFCS 345 (428)
T ss_pred cCCeEEC------CCCCE------EEEEECCCCCceEEEEECcccccceEEec-----cCCCCccceeECCCCCEEEEEE
Confidence 4567899 78887 66655 4665556654321 012122222 2334567789999999888765
Q ss_pred eC---CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC---CCcEEEEcCCCcc
Q 048511 195 YG---GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH---DQTTRVFAPWKNV 255 (351)
Q Consensus 195 ~d---g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~---dg~i~vwd~~~~~ 255 (351)
.+ ..|.+||+.+++. ..+......+....|+|||+.|+..+. ...|+++|+..++
T Consensus 346 ~~~g~~~I~v~dl~~g~~------~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 346 VIKGVRQICVYDLATGRD------YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred cCCCCcEEEEEECCCCCe------EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 43 4799999988742 222222335677899999998765433 3568888887665
No 280
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.96 E-value=4.1e-07 Score=80.03 Aligned_cols=132 Identities=11% Similarity=0.077 Sum_probs=80.9
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG 220 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 220 (351)
+..++.++.+..||.++ ++.+-.... .. ..... ..+..+++++.+|.+..+|..+++. +-....
T Consensus 244 vy~~~~~g~l~a~d~~t--G~~~W~~~~---~~----~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~-----~W~~~~ 307 (377)
T TIGR03300 244 VYAVSYQGRVAALDLRS--GRVLWKRDA---SS----YQGPA--VDDNRLYVTDADGVVVALDRRSGSE-----LWKNDE 307 (377)
T ss_pred EEEEEcCCEEEEEECCC--CcEEEeecc---CC----ccCce--EeCCEEEEECCCCeEEEEECCCCcE-----EEcccc
Confidence 77788899999999988 554433321 01 11112 2466788888999999999988742 211111
Q ss_pred c-cccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCe
Q 048511 221 H-FAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKV 299 (351)
Q Consensus 221 ~-~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~ 299 (351)
. ......... .+..|++++.+|.|+++|..+++ .+.+...+...+..--... ++.|+.++.||.
T Consensus 308 ~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~----------~~~~~~~~~~~~~~sp~~~---~~~l~v~~~dG~ 372 (377)
T TIGR03300 308 LKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGS----------FVARLKTDGSGIASPPVVV---GDGLLVQTRDGD 372 (377)
T ss_pred ccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCC----------EEEEEEcCCCccccCCEEE---CCEEEEEeCCce
Confidence 1 111111112 35688889999999999998887 3333333433332222233 345888889999
Q ss_pred EEEE
Q 048511 300 ARVF 303 (351)
Q Consensus 300 v~vw 303 (351)
|..|
T Consensus 373 l~~~ 376 (377)
T TIGR03300 373 LYAF 376 (377)
T ss_pred EEEe
Confidence 8876
No 281
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=9.9e-08 Score=85.50 Aligned_cols=237 Identities=13% Similarity=0.138 Sum_probs=155.0
Q ss_pred ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCC----CCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511 6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGE----AISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK 81 (351)
Q Consensus 6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~----~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~ 81 (351)
..|.|-|..+ ++.+..+.-|...|+.+.|.|.+.|.+- ...-+||++...|.|.+||+.......
T Consensus 35 slV~VVDs~s---~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~-------- 103 (1062)
T KOG1912|consen 35 SLVSVVDSRS---LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN-------- 103 (1062)
T ss_pred ceEEEEehhh---hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh--------
Confidence 4566666655 4667888899999999999975433200 123477888889999999998764432
Q ss_pred ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCC-cccCCCceeEEeecCCeEEEEeccCCCc
Q 048511 82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDG-VSCQQPSSILSASMDKTMMIWQPEKTTG 160 (351)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~-~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 160 (351)
.+..|.+++..++|.|.. ++. .+ |+.-....++.+|+..+ |
T Consensus 104 ---------------------------~l~~~~~~~qdl~W~~~r---d~Srd~------LlaIh~ss~lvLwntdt--G 145 (1062)
T KOG1912|consen 104 ---------------------------WLSHSNDSVQDLCWVPAR---DDSRDV------LLAIHGSSTLVLWNTDT--G 145 (1062)
T ss_pred ---------------------------hhcCCCcchhheeeeecc---Ccchhe------eEEecCCcEEEEEEccC--C
Confidence 245678899999999755 343 34 77778889999999999 5
Q ss_pred ceEEEEEeccccccccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCcccC--cccccccccccc--------------
Q 048511 161 IWMNVVTVGELSHSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDN--WQPQKVPSGHFA-------------- 223 (351)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~~~~~~~-------------- 223 (351)
+..-... .......|+.++| +.+.+..-+..|.+.+-+.-...... .+..+.-..|..
T Consensus 146 ~k~Wk~~-----ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ 220 (1062)
T KOG1912|consen 146 EKFWKYD-----YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNST 220 (1062)
T ss_pred ceeeccc-----cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccc
Confidence 5443332 3344566788888 66777777777877777653221100 000111111111
Q ss_pred -----------cEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEE
Q 048511 224 -----------AVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFV 292 (351)
Q Consensus 224 -----------~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 292 (351)
....++|+|.-+-++-....+.+.|+|++-.. ++.......+.+.-+.+.|......|.
T Consensus 221 ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~----------~l~vvpier~~akfv~vlP~~~rd~Lf 290 (1062)
T KOG1912|consen 221 TSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYEC----------CLAVVPIERGGAKFVDVLPDPRRDALF 290 (1062)
T ss_pred cCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhc----------eeEEEEeccCCcceeEeccCCCcceEE
Confidence 01224678865555555567889999997766 333333334445667788755678899
Q ss_pred EecCCCeEEEEecC
Q 048511 293 SGADEKVARVFEAP 306 (351)
Q Consensus 293 s~~~dg~v~vw~~~ 306 (351)
+.-.||.+.+|-.+
T Consensus 291 clH~nG~ltirvrk 304 (1062)
T KOG1912|consen 291 CLHSNGRLTIRVRK 304 (1062)
T ss_pred EEecCCeEEEEEee
Confidence 99999999999754
No 282
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.95 E-value=3.2e-07 Score=77.85 Aligned_cols=143 Identities=11% Similarity=0.142 Sum_probs=105.5
Q ss_pred ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCC-eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEE
Q 048511 112 GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDK-TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSI 190 (351)
Q Consensus 112 ~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 190 (351)
+|...|.-..+. .+++- ++.|..|| .+-|+|.+. ++.. .+. ..-+.|.++..+++|+++
T Consensus 357 ~~~~~VrY~r~~------~~~e~------~vigt~dgD~l~iyd~~~--~e~k-r~e-----~~lg~I~av~vs~dGK~~ 416 (668)
T COG4946 357 GKKGGVRYRRIQ------VDPEG------DVIGTNDGDKLGIYDKDG--GEVK-RIE-----KDLGNIEAVKVSPDGKKV 416 (668)
T ss_pred CCCCceEEEEEc------cCCcc------eEEeccCCceEEEEecCC--ceEE-Eee-----CCccceEEEEEcCCCcEE
Confidence 466667777777 56666 99999999 899999997 4432 222 455679999999999999
Q ss_pred EEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCC----CcEEEEcCCCccccccCccceEE
Q 048511 191 LAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD----QTTRVFAPWKNVASLMGENSWHE 266 (351)
Q Consensus 191 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~ 266 (351)
+++.....|.++|+.++.. ...-+...+-|+...|+|+++++|-+=-+ ..|+++|+..++. ..
T Consensus 417 vvaNdr~el~vididngnv-----~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki--------y~ 483 (668)
T COG4946 417 VVANDRFELWVIDIDNGNV-----RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI--------YD 483 (668)
T ss_pred EEEcCceEEEEEEecCCCe-----eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE--------EE
Confidence 9999999999999999842 22223345689999999999999977555 4799999988761 23
Q ss_pred eccccccccceeEEEEeeeCCCcEEE
Q 048511 267 VARPQVHGHDINCVTIIQGKGNHRFV 292 (351)
Q Consensus 267 ~~~~~~~~~~i~~~~~~~~~~~~~l~ 292 (351)
+.++.++. .+-+|.| ++++|.
T Consensus 484 vTT~ta~D---fsPaFD~--d~ryLY 504 (668)
T COG4946 484 VTTPTAYD---FSPAFDP--DGRYLY 504 (668)
T ss_pred ecCCcccc---cCcccCC--CCcEEE
Confidence 44444443 3456777 676654
No 283
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.94 E-value=4.3e-08 Score=81.15 Aligned_cols=143 Identities=13% Similarity=0.116 Sum_probs=99.8
Q ss_pred CCccEEEEeeCCCcEEEEecCCCcccceee--cccccceeeeEeeecCCeEEecC---CceeEEEEE-------eccccc
Q 048511 47 AISILLVSSSQDKVIRIWKLALRGSSANTQ--STYRKEVISLASYIEGPVLVAGS---SSYQVSVES-------LLIGHE 114 (351)
Q Consensus 47 ~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~-------~~~~h~ 114 (351)
+++++||.+..+....++++.......... ........++.+..+.....++. ....+.++. ...||-
T Consensus 72 ~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhv 151 (390)
T KOG3914|consen 72 DSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGHV 151 (390)
T ss_pred CCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhhh
Confidence 678899988888887788876654311111 11123344555555554444433 333443333 245788
Q ss_pred cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe
Q 048511 115 DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG 194 (351)
Q Consensus 115 ~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 194 (351)
.-++.++|+ +|+++ ++++..|..|++-.... .-.+..+. .+|...|..+++-++. .|++++
T Consensus 152 Sml~dVavS------~D~~~------IitaDRDEkIRvs~ypa--~f~Iesfc----lGH~eFVS~isl~~~~-~LlS~s 212 (390)
T KOG3914|consen 152 SMLLDVAVS------PDDQF------IITADRDEKIRVSRYPA--TFVIESFC----LGHKEFVSTISLTDNY-LLLSGS 212 (390)
T ss_pred hhhheeeec------CCCCE------EEEecCCceEEEEecCc--ccchhhhc----cccHhheeeeeeccCc-eeeecC
Confidence 899999999 78899 99999999999988765 44444444 3788899999987654 499999
Q ss_pred eCCeEEEEEcccCc
Q 048511 195 YGGAFHLWRNVGVD 208 (351)
Q Consensus 195 ~dg~i~~~d~~~~~ 208 (351)
.|++|++||+.+++
T Consensus 213 GD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 213 GDKTLRLWDITSGK 226 (390)
T ss_pred CCCcEEEEecccCC
Confidence 99999999999984
No 284
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.93 E-value=8.5e-07 Score=70.74 Aligned_cols=181 Identities=9% Similarity=0.048 Sum_probs=112.7
Q ss_pred ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecc--ccccccceEEEEEcCC------C
Q 048511 116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGE--LSHSALGFYGGHWSPD------G 187 (351)
Q Consensus 116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~i~~i~~~~~------~ 187 (351)
.-..++|+ +|+.+ ||.+...|+|+++|+.. ..+..+.... .......|..+.|-+. .
T Consensus 45 QWRkl~WS------pD~tl------La~a~S~G~i~vfdl~g---~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws 109 (282)
T PF15492_consen 45 QWRKLAWS------PDCTL------LAYAESTGTIRVFDLMG---SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWS 109 (282)
T ss_pred hheEEEEC------CCCcE------EEEEcCCCeEEEEeccc---ceeEEcCcccccCCccccceeeeEeeccccccccc
Confidence 35679999 79999 99999999999999984 3333333211 1122345666666542 2
Q ss_pred CEEEEEeeCCeEEEEEcccCcccCcccccccc--c-ccccEEEEEeecCCCEEEEEeC-CC----------cEEEEcCCC
Q 048511 188 RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS--G-HFAAVMDISWSRSSDYLLSVSH-DQ----------TTRVFAPWK 253 (351)
Q Consensus 188 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--~-~~~~v~~v~~sp~~~~l~s~~~-dg----------~i~vwd~~~ 253 (351)
..|++-..+|.++-|-+..+....++....+. . +...|.++.++|..++|+.|+. .. -+.-|.+-+
T Consensus 110 ~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~ 189 (282)
T PF15492_consen 110 YELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILS 189 (282)
T ss_pred eeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcC
Confidence 25777788898888877543222233333322 2 3668999999999988877653 11 356676544
Q ss_pred cccccc-----------Cc--cceEEecc------ccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhce
Q 048511 254 NVASLM-----------GE--NSWHEVAR------PQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTL 313 (351)
Q Consensus 254 ~~~~~~-----------~~--~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~ 313 (351)
+..-.. .. ..+..+.. .......|..|..+| |+.+||+...+|.|.+|+++ -...+..
T Consensus 190 ~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP--dg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 190 DSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP--DGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred CCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC--CCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 321100 00 00011111 111234589999999 99999999999999999988 4444443
No 285
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.92 E-value=6.6e-09 Score=58.51 Aligned_cols=38 Identities=32% Similarity=0.527 Sum_probs=35.8
Q ss_pred EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEe
Q 048511 20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWK 65 (351)
Q Consensus 20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd 65 (351)
+++.++.+|.+.|++|+|+ +++.+|+|++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~--------~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWS--------PDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEE--------TTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEe--------cccccceeeCCCCEEEEEC
Confidence 5678999999999999999 8899999999999999997
No 286
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.92 E-value=3e-06 Score=72.10 Aligned_cols=224 Identities=7% Similarity=0.028 Sum_probs=130.0
Q ss_pred CCCceEEEEEccCCCceEEEEeeeec-------CCceeEEEeeCCcccCCCCCccEEEEee-C-CCcEEEEecCCCcccc
Q 048511 3 GLDNKIHLYRGQRTGKFVRACELKGH-------TDWIRSLDFSLPVCTSGEAISILLVSSS-Q-DKVIRIWKLALRGSSA 73 (351)
Q Consensus 3 ~~dg~i~vw~~~~~~~~~~~~~~~~h-------~~~V~~l~~~~~~~~~~~~~~~~l~t~~-~-dg~i~iwd~~~~~~~~ 73 (351)
-.+..|.+||+.+ .+ .+..+.-- ...-..++++ ++|++|+... . +..|.+.|+.+++.+.
T Consensus 74 ~~~d~V~v~D~~t-~~--~~~~i~~p~~p~~~~~~~~~~~~ls--------~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 74 KRTDYVEVIDPQT-HL--PIADIELPEGPRFLVGTYPWMTSLT--------PDNKTLLFYQFSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred CCCCEEEEEECcc-Cc--EEeEEccCCCchhhccCccceEEEC--------CCCCEEEEecCCCCCEEEEEECCCCcEEE
Confidence 3678999999998 63 34444321 1123467888 8899988765 3 7899999999988877
Q ss_pred eeecccccc------eeeeEeeecCCeEEecC-CceeEEEEEe--ccccccceEE-EEecCCCCCCCCCcccCCCceeEE
Q 048511 74 NTQSTYRKE------VISLASYIEGPVLVAGS-SSYQVSVESL--LIGHEDWVYS-VQWEPPSTAPSDGVSCQQPSSILS 143 (351)
Q Consensus 74 ~~~~~~~~~------~~~~~~~~~~~~l~~~~-~~~~~~~~~~--~~~h~~~v~~-l~~~p~~~~~~~~~~~~~~~~l~s 143 (351)
.+..+.... ...+..+.||..+.... .++....... +.+...++.. -.|.+ .++.. +..
T Consensus 143 ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~-----~dg~~------~~v 211 (352)
T TIGR02658 143 MMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSN-----KSGRL------VWP 211 (352)
T ss_pred EEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEc-----CCCcE------EEE
Confidence 665432111 11122334444433211 1121111111 1110111100 02332 36665 555
Q ss_pred eecCCeEEEEeccCCCcceEEEEEe---ccc--cccccceEEEEEcCCCCEEEEEee----------CCeEEEEEcccCc
Q 048511 144 ASMDKTMMIWQPEKTTGIWMNVVTV---GEL--SHSALGFYGGHWSPDGRSILAHGY----------GGAFHLWRNVGVD 208 (351)
Q Consensus 144 ~~~d~~i~iwd~~~~~~~~~~~~~~---~~~--~~~~~~i~~i~~~~~~~~l~~~~~----------dg~i~~~d~~~~~ 208 (351)
... |+|.+.|+....-.....+.. ... .-....+.-++++|+++.+++... .+.|.++|..+.
T Consensus 212 s~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~- 289 (352)
T TIGR02658 212 TYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG- 289 (352)
T ss_pred ecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC-
Confidence 555 999999975422111111211 110 112334445999999998888531 257999999886
Q ss_pred ccCcccccccccccccEEEEEeecCCC-EEEEEe-CCCcEEEEcCCCcc
Q 048511 209 IDNWQPQKVPSGHFAAVMDISWSRSSD-YLLSVS-HDQTTRVFAPWKNV 255 (351)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~-~dg~i~vwd~~~~~ 255 (351)
+.+..+.. ...+..++++||++ +|++.. .++.|.++|..+++
T Consensus 290 ----kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 290 ----KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred ----eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 34555442 34789999999999 777666 57889999998886
No 287
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.92 E-value=8.3e-07 Score=78.11 Aligned_cols=265 Identities=11% Similarity=0.065 Sum_probs=139.5
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK 81 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~ 81 (351)
++.+|.|..+|..+ |+. +....-......... .++..++.++.++.+..+|..+++.........
T Consensus 71 ~~~~g~v~a~d~~t-G~~--~W~~~~~~~~~~~p~----------v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-- 135 (377)
T TIGR03300 71 ADADGTVVALDAET-GKR--LWRVDLDERLSGGVG----------ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-- 135 (377)
T ss_pred ECCCCeEEEEEccC-CcE--eeeecCCCCcccceE----------EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc--
Confidence 45678888888877 643 333222221111122 236678888889999999998888765543221
Q ss_pred ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCC--------CCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511 82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPP--------STAPSDGVSCQQPSSILSASMDKTMMIW 153 (351)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~--------~~~~~~~~~~~~~~~l~s~~~d~~i~iw 153 (351)
...+.... .+..++++..++.+..+....+.. ++....... ... -.+.. ++.+..++.+..+
T Consensus 136 ~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~--~W~~~~~~~~~~~~~~~sp~-~~~~~------v~~~~~~g~v~al 205 (377)
T TIGR03300 136 EVLSPPLV-ANGLVVVRTNDGRLTALDAATGER--LWTYSRVTPALTLRGSASPV-IADGG------VLVGFAGGKLVAL 205 (377)
T ss_pred eeecCCEE-ECCEEEEECCCCeEEEEEcCCCce--eeEEccCCCceeecCCCCCE-EECCE------EEEECCCCEEEEE
Confidence 11111111 233444444455554443322211 111111000 000 01123 6778888999999
Q ss_pred eccCCCcceEEEEEeccccccc--cceEEEEEcC--CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEE
Q 048511 154 QPEKTTGIWMNVVTVGELSHSA--LGFYGGHWSP--DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDIS 229 (351)
Q Consensus 154 d~~~~~~~~~~~~~~~~~~~~~--~~i~~i~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~ 229 (351)
|+++ +..+-........... .....+.-+| .+..+++++.+|.++.||..+++. +-... ... .....
T Consensus 206 d~~t--G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~-----~W~~~-~~~-~~~p~ 276 (377)
T TIGR03300 206 DLQT--GQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV-----LWKRD-ASS-YQGPA 276 (377)
T ss_pred EccC--CCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE-----EEeec-cCC-ccCce
Confidence 9988 5443322211100000 0000010011 355788888999999999988742 22111 111 11112
Q ss_pred eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-ch
Q 048511 230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LS 308 (351)
Q Consensus 230 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~ 308 (351)
..+..++.++.||.+..+|..+++ ..|+.. .. .......... .+..|++++.+|.|+++|.. ++
T Consensus 277 --~~~~~vyv~~~~G~l~~~d~~tG~------~~W~~~-~~--~~~~~ssp~i----~g~~l~~~~~~G~l~~~d~~tG~ 341 (377)
T TIGR03300 277 --VDDNRLYVTDADGVVVALDRRSGS------ELWKND-EL--KYRQLTAPAV----VGGYLVVGDFEGYLHWLSREDGS 341 (377)
T ss_pred --EeCCEEEEECCCCeEEEEECCCCc------EEEccc-cc--cCCccccCEE----ECCEEEEEeCCCEEEEEECCCCC
Confidence 245677778899999999998886 233321 11 1111222222 25688889999999999986 77
Q ss_pred hhhceee
Q 048511 309 FLKTLNH 315 (351)
Q Consensus 309 ~~~~~~~ 315 (351)
.+.+++.
T Consensus 342 ~~~~~~~ 348 (377)
T TIGR03300 342 FVARLKT 348 (377)
T ss_pred EEEEEEc
Confidence 7766653
No 288
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2.6e-08 Score=83.65 Aligned_cols=227 Identities=13% Similarity=0.091 Sum_probs=153.7
Q ss_pred ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEE
Q 048511 27 GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSV 106 (351)
Q Consensus 27 ~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 106 (351)
-|.+.|+.+... -.+++.+++.||.++.|.-..-.- +..
T Consensus 7 mhrd~i~hv~~t---------ka~fiiqASlDGh~KFWkKs~isG--------------------------------vEf 45 (558)
T KOG0882|consen 7 MHRDVITHVFPT---------KAKFIIQASLDGHKKFWKKSRISG--------------------------------VEF 45 (558)
T ss_pred cccceeeeEeee---------hhheEEeeecchhhhhcCCCCccc--------------------------------eee
Confidence 378888887665 467999999999999997543111 123
Q ss_pred EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec-CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC
Q 048511 107 ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM-DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP 185 (351)
Q Consensus 107 ~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~ 185 (351)
+..+..|...|.+++.+ -++.+ +.|.+. |..++++|++. -..+..+++..+++. + +...++
T Consensus 46 VKhFraHL~~I~sl~~S------~dg~L------~~Sv~d~Dhs~KvfDvEn--~DminmiKL~~lPg~---a-~wv~sk 107 (558)
T KOG0882|consen 46 VKHFRAHLGVILSLAVS------YDGWL------FRSVEDPDHSVKVFDVEN--FDMINMIKLVDLPGF---A-EWVTSK 107 (558)
T ss_pred hhhhHHHHHHHHhhhcc------cccee------EeeccCcccceeEEEeec--cchhhhcccccCCCc---e-EEecCC
Confidence 34466788889999999 78888 999777 99999999997 333333333222221 1 112222
Q ss_pred CC--CEEEEEe-eCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCcc
Q 048511 186 DG--RSILAHG-YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGEN 262 (351)
Q Consensus 186 ~~--~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 262 (351)
.. ..++++. .++.+.++|-..... +....-.-|..+|..+.++|.+..+++....|.|.-|.....-.-+....
T Consensus 108 Gd~~s~IAVs~~~sg~i~VvD~~~d~~---q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l 184 (558)
T KOG0882|consen 108 GDKISLIAVSLFKSGKIFVVDGFGDFC---QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNL 184 (558)
T ss_pred CCeeeeEEeecccCCCcEEECCcCCcC---ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccc
Confidence 21 1344433 569999999876532 33444556899999999999999999999899999999873110000011
Q ss_pred ceEE-----eccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511 263 SWHE-----VARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT 317 (351)
Q Consensus 263 ~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~ 317 (351)
.|.. +..+.-......++.|+| ++..+.+-+.|..||++... |+.++.+....
T Consensus 185 ~~~~K~eTdLy~f~K~Kt~pts~Efsp--~g~qistl~~DrkVR~F~~KtGklvqeiDE~~ 243 (558)
T KOG0882|consen 185 NFELKHETDLYGFPKAKTEPTSFEFSP--DGAQISTLNPDRKVRGFVFKTGKLVQEIDEVL 243 (558)
T ss_pred cccccccchhhcccccccCccceEEcc--ccCcccccCcccEEEEEEeccchhhhhhhccc
Confidence 2211 111112234478999999 99999999999999999987 77777776543
No 289
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.89 E-value=3.2e-07 Score=82.16 Aligned_cols=160 Identities=13% Similarity=0.080 Sum_probs=97.4
Q ss_pred cccceEEEEecCCCCCCCCCcccCCCceeEEeecC---CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCE
Q 048511 113 HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD---KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRS 189 (351)
Q Consensus 113 h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 189 (351)
+...+.+..|+ ||++. |+..+.+ ..|.+||+.+ +.... +. . ........+|+|+|+.
T Consensus 216 ~~~~~~~p~wS------PDG~~------La~~s~~~g~~~L~~~dl~t--g~~~~-lt--~---~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 216 SPEPLMSPAWS------PDGRK------LAYVSFENRKAEIFVQDIYT--QVREK-VT--S---FPGINGAPRFSPDGKK 275 (448)
T ss_pred CCCcccCceEC------CCCCE------EEEEEecCCCcEEEEEECCC--CCeEE-ec--C---CCCCcCCeeECCCCCE
Confidence 45678889999 78887 7766543 2588889887 43221 11 1 1122346799999997
Q ss_pred EEE-EeeCCe--EEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-CC--cEEEEcCCCccccccCccc
Q 048511 190 ILA-HGYGGA--FHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-DQ--TTRVFAPWKNVASLMGENS 263 (351)
Q Consensus 190 l~~-~~~dg~--i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~ 263 (351)
|+. ...++. |+++|+.+++ ...+..+.......+|+|||+.|+..+. ++ .|+++|+.+++.
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~------- 342 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKA------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV------- 342 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCC------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-------
Confidence 765 455564 7777887753 2334444455677899999998876553 34 466667765541
Q ss_pred eEEeccccccccceeEEEEeeeCCCcEEEEecC-CC--eEEEEecCchhhh
Q 048511 264 WHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD-EK--VARVFEAPLSFLK 311 (351)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-dg--~v~vw~~~~~~~~ 311 (351)
..+. . ........+|+| |+++|+..+. ++ .|.++|+.+...+
T Consensus 343 -~~Lt-~--~g~~~~~~~~Sp--DG~~l~~~~~~~g~~~I~~~dl~~g~~~ 387 (448)
T PRK04792 343 -SRLT-F--EGEQNLGGSITP--DGRSMIMVNRTNGKFNIARQDLETGAMQ 387 (448)
T ss_pred -EEEe-c--CCCCCcCeeECC--CCCEEEEEEecCCceEEEEEECCCCCeE
Confidence 1221 1 122234568999 8888776554 44 3455666643333
No 290
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.87 E-value=1.8e-06 Score=84.77 Aligned_cols=202 Identities=10% Similarity=0.061 Sum_probs=120.3
Q ss_pred eeEEEeeCCcccCCCCCccEEEEee-CCCcEEEEecCCCcccceeec---------------ccccceeeeEeeec-CCe
Q 048511 32 IRSLDFSLPVCTSGEAISILLVSSS-QDKVIRIWKLALRGSSANTQS---------------TYRKEVISLASYIE-GPV 94 (351)
Q Consensus 32 V~~l~~~~~~~~~~~~~~~~l~t~~-~dg~i~iwd~~~~~~~~~~~~---------------~~~~~~~~~~~~~~-~~~ 94 (351)
...|++. ++++.|+.+. ..+.|+++|+.++........ ..-.....++++++ +.+
T Consensus 626 P~GIavd--------~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~L 697 (1057)
T PLN02919 626 PQGLAYN--------AKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKV 697 (1057)
T ss_pred CcEEEEe--------CCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeE
Confidence 5778888 6676665554 457799999876532111000 00123457888884 445
Q ss_pred EEecCCceeEEEEEe-------ccc---------c------ccceEEEEecCCCCCCCCCc-ccCCCceeEEeecCCeEE
Q 048511 95 LVAGSSSYQVSVESL-------LIG---------H------EDWVYSVQWEPPSTAPSDGV-SCQQPSSILSASMDKTMM 151 (351)
Q Consensus 95 l~~~~~~~~~~~~~~-------~~~---------h------~~~v~~l~~~p~~~~~~~~~-~~~~~~~l~s~~~d~~i~ 151 (351)
+++...+..+..+.. +.+ + -.....++++ +++. + +++-+.++.|+
T Consensus 698 yVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavs------pdG~~L------YVADs~n~~Ir 765 (1057)
T PLN02919 698 YIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLS------PDLKEL------YIADSESSSIR 765 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEe------CCCCEE------EEEECCCCeEE
Confidence 555444444433321 110 0 1234568888 6666 5 66667789999
Q ss_pred EEeccCCCcceEEEE-----------Eeccccc-----cccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccc
Q 048511 152 IWQPEKTTGIWMNVV-----------TVGELSH-----SALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQ 215 (351)
Q Consensus 152 iwd~~~~~~~~~~~~-----------~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 215 (351)
+||+.+ +...... ......+ .-.....++++++|+.+++-..+++|++||..++......-.
T Consensus 766 v~D~~t--g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~ 843 (1057)
T PLN02919 766 ALDLKT--GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGT 843 (1057)
T ss_pred EEECCC--CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEecc
Confidence 999986 3221100 0000000 011245889999999888888899999999977532100000
Q ss_pred --------cccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511 216 --------KVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 216 --------~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
....+.-.....|+++++|+++++-+.++.|++||+.++.
T Consensus 844 G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 844 GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 0011222357889999999988888889999999998875
No 291
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.85 E-value=4.9e-09 Score=59.04 Aligned_cols=38 Identities=32% Similarity=0.514 Sum_probs=35.7
Q ss_pred ccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEc
Q 048511 213 QPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFA 250 (351)
Q Consensus 213 ~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd 250 (351)
+++.++.+|...|++|+|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788899999999999999999999999999999997
No 292
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.79 E-value=6e-06 Score=79.73 Aligned_cols=271 Identities=13% Similarity=0.131 Sum_probs=160.4
Q ss_pred CCCCceEEEE----EccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecC----CCccc-
Q 048511 2 GGLDNKIHLY----RGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLA----LRGSS- 72 (351)
Q Consensus 2 g~~dg~i~vw----~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~----~~~~~- 72 (351)
+..+|.|.+. +... ...+.+..+ ...|.+++|+ ||+..|+....+++|.+..-. ....+
T Consensus 93 ~~~~Gdi~~~~~~~~~~~-~~~E~VG~v---d~GI~a~~WS--------PD~Ella~vT~~~~l~~mt~~fd~i~E~~l~ 160 (928)
T PF04762_consen 93 ALASGDIILVREDPDPDE-DEIEIVGSV---DSGILAASWS--------PDEELLALVTGEGNLLLMTRDFDPISEVPLD 160 (928)
T ss_pred EECCceEEEEEccCCCCC-ceeEEEEEE---cCcEEEEEEC--------CCcCEEEEEeCCCEEEEEeccceEEEEeecC
Confidence 3457888888 5555 444444443 5689999999 889999999888888775321 00000
Q ss_pred -------------------c--------------eeecc--------cccceeeeEeeecCCeEEecCC------ceeEE
Q 048511 73 -------------------A--------------NTQST--------YRKEVISLASYIEGPVLVAGSS------SYQVS 105 (351)
Q Consensus 73 -------------------~--------------~~~~~--------~~~~~~~~~~~~~~~~l~~~~~------~~~~~ 105 (351)
+ ....+ .......+.|..||.++++..- ...++
T Consensus 161 ~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iR 240 (928)
T PF04762_consen 161 SDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIR 240 (928)
T ss_pred ccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEE
Confidence 0 00000 1224557789999999998543 22333
Q ss_pred EEEe---ccccccce----EEEEecCCCCCCCCCcccCCCceeEEeec---CCeEEEEeccCCCcceEEEEEeccccccc
Q 048511 106 VESL---LIGHEDWV----YSVQWEPPSTAPSDGVSCQQPSSILSASM---DKTMMIWQPEKTTGIWMNVVTVGELSHSA 175 (351)
Q Consensus 106 ~~~~---~~~h~~~v----~~l~~~p~~~~~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 175 (351)
++.. +..-..+| .+++|- |.|++ +|+... ...|.+|.-. |.....+.+.. ....
T Consensus 241 Vy~ReG~L~stSE~v~gLe~~l~Wr------PsG~l------IA~~q~~~~~~~VvFfErN---GLrhgeF~l~~-~~~~ 304 (928)
T PF04762_consen 241 VYSREGELQSTSEPVDGLEGALSWR------PSGNL------IASSQRLPDRHDVVFFERN---GLRHGEFTLRF-DPEE 304 (928)
T ss_pred EECCCceEEeccccCCCccCCccCC------CCCCE------EEEEEEcCCCcEEEEEecC---CcEeeeEecCC-CCCC
Confidence 3322 11112222 467888 78888 888765 3456666544 54444555432 2345
Q ss_pred cceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccc-cccEEEEEeecCC-CEEEEEeCCCcEEEEcCC-
Q 048511 176 LGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH-FAAVMDISWSRSS-DYLLSVSHDQTTRVFAPW- 252 (351)
Q Consensus 176 ~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~~-~~l~s~~~dg~i~vwd~~- 252 (351)
..|..+.|++++..||....|. |.+|-..+-. |-+.+.+.-. ...+..+.|+|.. ..|...+.+|.+..+++.
T Consensus 305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH---WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~ 380 (928)
T PF04762_consen 305 EKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH---WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW 380 (928)
T ss_pred ceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE---EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEE
Confidence 6789999999999999977655 9999876643 3333444322 2234558999854 346666665666554432
Q ss_pred ---Ccccccc----------Cc-cceEEe-----cccc-----ccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 253 ---KNVASLM----------GE-NSWHEV-----ARPQ-----VHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 253 ---~~~~~~~----------~~-~~~~~~-----~~~~-----~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
....... +. -...++ ..+. ....+|.+++|++ ++..+++-..||.|.+|...
T Consensus 381 ~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~--~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 381 DVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSP--SNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred EEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeC--CCCeEEEEECCCCEEEEEec
Confidence 1110000 00 000000 0000 1235699999999 67779999999999999855
No 293
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.77 E-value=7.5e-06 Score=70.33 Aligned_cols=253 Identities=10% Similarity=0.079 Sum_probs=153.7
Q ss_pred CceEEEEEccCCCceEEEEeeeecCCc--ee-EEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccce-eecccc
Q 048511 5 DNKIHLYRGQRTGKFVRACELKGHTDW--IR-SLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSAN-TQSTYR 80 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~~~~~~h~~~--V~-~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~-~~~~~~ 80 (351)
++.+.|||..+ + ..+..+..-..+ .+ -+.|+ .+..++|-.. ...+.|+++ +...... ......
T Consensus 107 ~n~~~vwd~~s-g--~iv~sf~~~~q~~~~Wp~~k~s--------~~D~y~ARvv-~~sl~i~e~-t~n~~~~p~~~lr~ 173 (561)
T COG5354 107 KNNVFVWDIAS-G--MIVFSFNGISQPYLGWPVLKFS--------IDDKYVARVV-GSSLYIHEI-TDNIEEHPFKNLRP 173 (561)
T ss_pred cCceeEEeccC-c--eeEeeccccCCcccccceeeee--------ecchhhhhhc-cCeEEEEec-CCccccCchhhccc
Confidence 45799999999 7 456666655555 56 68888 7777777553 346999997 3332211 111113
Q ss_pred cceeeeEeeecC--CeEEe-----cCCceeEEEEEeccc-----cc---cceEEEEecCCCCCCCCCcccCCCceeEEee
Q 048511 81 KEVISLASYIEG--PVLVA-----GSSSYQVSVESLLIG-----HE---DWVYSVQWEPPSTAPSDGVSCQQPSSILSAS 145 (351)
Q Consensus 81 ~~~~~~~~~~~~--~~l~~-----~~~~~~~~~~~~~~~-----h~---~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~ 145 (351)
..+....++|.+ ..|+. .+....+.++..-.. |+ ..=..+.|. ..|++ |+.--
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~------~~g~~------ll~l~ 241 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQ------VLGKY------LLVLV 241 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEe------cCCce------EEEEE
Confidence 466677777753 23343 223333333332111 10 011246676 45554 33211
Q ss_pred -----------cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe--eCCeEEEEEcccCcccCc
Q 048511 146 -----------MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG--YGGAFHLWRNVGVDIDNW 212 (351)
Q Consensus 146 -----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~ 212 (351)
....+.|++++. .. +++. ....++|...+|.|.++.+++.+ .+-.+.++|++.+
T Consensus 242 ~t~~ksnKsyfgesnLyl~~~~e--~~----i~V~--~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N----- 308 (561)
T COG5354 242 MTHTKSNKSYFGESNLYLLRITE--RS----IPVE--KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN----- 308 (561)
T ss_pred EEeeecccceeccceEEEEeecc--cc----ccee--ccccccceeeeecccCCceeEEecccccceeecccccc-----
Confidence 124577777764 21 1111 03467899999999888766544 6788999999885
Q ss_pred ccccccccccccEEEEEeecCCCEEEEEeCC---CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCc
Q 048511 213 QPQKVPSGHFAAVMDISWSRSSDYLLSVSHD---QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNH 289 (351)
Q Consensus 213 ~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 289 (351)
....+ ....=..+.|+|.+++++.++-| |.+-+||...+. ..+..+.+.+ .+-+.|+| |++
T Consensus 309 -l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf---------~~~~~~~~~n--~s~~~wsp--d~q 372 (561)
T COG5354 309 -LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF---------KVAGAFNGLN--TSYCDWSP--DGQ 372 (561)
T ss_pred -eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCce---------EEEEEeecCC--ceEeeccC--Cce
Confidence 22222 23334567899999999887754 789999987664 2343443333 45678999 888
Q ss_pred EEEEec------CCCeEEEEecCchhhh
Q 048511 290 RFVSGA------DEKVARVFEAPLSFLK 311 (351)
Q Consensus 290 ~l~s~~------~dg~v~vw~~~~~~~~ 311 (351)
++.+.. .|..|+|||+.+....
T Consensus 373 F~~~~~ts~k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 373 FYDTDTTSEKLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred EEEecCCCcccccCcceEEEEecCchhh
Confidence 887654 4778999998865544
No 294
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.76 E-value=3.2e-08 Score=80.42 Aligned_cols=122 Identities=11% Similarity=0.118 Sum_probs=92.2
Q ss_pred ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCC---CcceEEEEEeccccccccceEEEEEcC-CCCE
Q 048511 114 EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKT---TGIWMNVVTVGELSHSALGFYGGHWSP-DGRS 189 (351)
Q Consensus 114 ~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~ 189 (351)
.+.|.+++|. ..+++ +..|...|.|..+|++.. .+.+...+ .|...|+++..-. ++++
T Consensus 252 ksDVfAlQf~------~s~nL------v~~GcRngeI~~iDLR~rnqG~~~~a~rl------yh~Ssvtslq~Lq~s~q~ 313 (425)
T KOG2695|consen 252 KSDVFALQFA------GSDNL------VFNGCRNGEIFVIDLRCRNQGNGWCAQRL------YHDSSVTSLQILQFSQQK 313 (425)
T ss_pred chhHHHHHhc------ccCCe------eEecccCCcEEEEEeeecccCCCcceEEE------EcCcchhhhhhhccccce
Confidence 4567788888 66777 999999999999999973 12233333 5777888887666 7889
Q ss_pred EEEEeeCCeEEEEEcccCcccCcccccccccccccEEE--EEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511 190 ILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD--ISWSRSSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 190 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~--v~~sp~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
|++.+.+|+|.+||++.-+.+ +-+.++.+|...-.- +-..+....++++++|...|||.+..+.
T Consensus 314 LmaS~M~gkikLyD~R~~K~~--~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 314 LMASDMTGKIKLYDLRATKCK--KSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred EeeccCcCceeEeeehhhhcc--cceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence 999999999999999875321 237778888543222 3345667788899999999999998886
No 295
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.76 E-value=1.4e-05 Score=65.79 Aligned_cols=202 Identities=11% Similarity=0.014 Sum_probs=122.3
Q ss_pred CccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCC
Q 048511 48 ISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPST 127 (351)
Q Consensus 48 ~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~ 127 (351)
++.++++--..+.|..|+..++.... . . ......+.+..
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~-~-----------------------------------~--~~~~~G~~~~~--- 49 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEV-I-----------------------------------D--LPGPNGMAFDR--- 49 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEE-E-----------------------------------E--SSSEEEEEEEC---
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEE-E-----------------------------------e--cCCCceEEEEc---
Confidence 67777777778889999887654321 0 1 11155666662
Q ss_pred CCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC--------CeE
Q 048511 128 APSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG--------GAF 199 (351)
Q Consensus 128 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--------g~i 199 (351)
+++. |+.+...+ +.++|+.+ ++...................+++.|+|++.++.... |.|
T Consensus 50 --~~g~-------l~v~~~~~-~~~~d~~~--g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v 117 (246)
T PF08450_consen 50 --PDGR-------LYVADSGG-IAVVDPDT--GKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSV 117 (246)
T ss_dssp --TTSE-------EEEEETTC-EEEEETTT--TEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEE
T ss_pred --cCCE-------EEEEEcCc-eEEEecCC--CcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccce
Confidence 3444 55555554 55669887 5444333321111144567899999999976665543 556
Q ss_pred EEEEcccCcccCcccccccccccccEEEEEeecCCCEEE-EEeCCCcEEEEcCCCccccccCccceEEecccccccccee
Q 048511 200 HLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLL-SVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDIN 278 (351)
Q Consensus 200 ~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 278 (351)
..++.. ++ +..+...-...+.|+|+|+++.|+ +-+..+.|..|++....... ...+.+..+.......-
T Consensus 118 ~~~~~~-~~------~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~g~pD 187 (246)
T PF08450_consen 118 YRIDPD-GK------VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGEL---SNRRVFIDFPGGPGYPD 187 (246)
T ss_dssp EEEETT-SE------EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCE---EEEEEEEE-SSSSCEEE
T ss_pred EEECCC-Ce------EEEEecCcccccceEECCcchheeecccccceeEEEeccccccce---eeeeeEEEcCCCCcCCC
Confidence 666666 32 222222345578999999998775 55667889999986443100 01112222222223467
Q ss_pred EEEEeeeCCCcEEEEecCCCeEEEEecCchhhhcee
Q 048511 279 CVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLN 314 (351)
Q Consensus 279 ~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 314 (351)
.+++.. +|++.++....+.|.+++.+|+.+..+.
T Consensus 188 G~~vD~--~G~l~va~~~~~~I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 188 GLAVDS--DGNLWVADWGGGRIVVFDPDGKLLREIE 221 (246)
T ss_dssp EEEEBT--TS-EEEEEETTTEEEEEETTSCEEEEEE
T ss_pred cceEcC--CCCEEEEEcCCCEEEEECCCccEEEEEc
Confidence 889988 8998888888999999999988766654
No 296
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.74 E-value=2.9e-05 Score=66.37 Aligned_cols=160 Identities=11% Similarity=0.026 Sum_probs=116.2
Q ss_pred CCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCC-eEEEEEcccCc
Q 048511 130 SDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGG-AFHLWRNVGVD 208 (351)
Q Consensus 130 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-~i~~~d~~~~~ 208 (351)
.+|.+ ++..|. |.+-|.+.-. +..+ ++ ++...|.-..+..+++-++.|..|| .+-+||.++++
T Consensus 330 ~~Gd~------ia~VSR-GkaFi~~~~~--~~~i---qv----~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e 393 (668)
T COG4946 330 VNGDY------IALVSR-GKAFIMRPWD--GYSI---QV----GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE 393 (668)
T ss_pred CCCcE------EEEEec-CcEEEECCCC--CeeE---Ec----CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce
Confidence 46676 777765 4555655544 3322 22 4556688778888888899999998 89999999974
Q ss_pred ccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCC
Q 048511 209 IDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGN 288 (351)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 288 (351)
++.+...-+.|.++..+|+|++++.+.....|.+.|+.++.. +.+. +....-|+.++|+| ++
T Consensus 394 ------~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv--------~~id--kS~~~lItdf~~~~--ns 455 (668)
T COG4946 394 ------VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV--------RLID--KSEYGLITDFDWHP--NS 455 (668)
T ss_pred ------EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe--------eEec--ccccceeEEEEEcC--Cc
Confidence 556666778899999999999999998889999999998872 1221 22334599999999 99
Q ss_pred cEEEEecCCC----eEEEEecCchhhhceeeccccccch
Q 048511 289 HRFVSGADEK----VARVFEAPLSFLKTLNHATFQESSF 323 (351)
Q Consensus 289 ~~l~s~~~dg----~v~vw~~~~~~~~~~~~~~~~~~~~ 323 (351)
++||-+--+| .|+++|+.+..+..........-.+
T Consensus 456 r~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsP 494 (668)
T COG4946 456 RWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSP 494 (668)
T ss_pred eeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCc
Confidence 9999877665 6899999865454444444444333
No 297
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.71 E-value=1.1e-05 Score=66.15 Aligned_cols=220 Identities=8% Similarity=-0.067 Sum_probs=123.3
Q ss_pred CCceEEEEEccCCCceEEEEeeeec--CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511 4 LDNKIHLYRGQRTGKFVRACELKGH--TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK 81 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~ 81 (351)
.+|+|..||..+ |+ .+....-- .....+..+ .++..+++++.++.|..||..+++.+.......
T Consensus 1 ~~g~l~~~d~~t-G~--~~W~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-- 66 (238)
T PF13360_consen 1 DDGTLSALDPRT-GK--ELWSYDLGPGIGGPVATAV---------PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-- 66 (238)
T ss_dssp -TSEEEEEETTT-TE--EEEEEECSSSCSSEEETEE---------EETTEEEEEETTSEEEEEETTTSEEEEEEECSS--
T ss_pred CCCEEEEEECCC-CC--EEEEEECCCCCCCccceEE---------EeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc--
Confidence 378999999988 74 34443310 112221122 246678888899999999999887655443210
Q ss_pred ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcc
Q 048511 82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGI 161 (351)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 161 (351)
..... .. .++.. ++.+..++.++.+|.++ ++
T Consensus 67 ------------------------------~~~~~---~~--------~~~~~------v~v~~~~~~l~~~d~~t--G~ 97 (238)
T PF13360_consen 67 ------------------------------PISGA---PV--------VDGGR------VYVGTSDGSLYALDAKT--GK 97 (238)
T ss_dssp ------------------------------CGGSG---EE--------EETTE------EEEEETTSEEEEEETTT--SC
T ss_pred ------------------------------cccce---ee--------ecccc------cccccceeeeEecccCC--cc
Confidence 00111 11 12333 66666888999999888 66
Q ss_pred eEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccc----------cEEEEEee
Q 048511 162 WMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFA----------AVMDISWS 231 (351)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~----------~v~~v~~s 231 (351)
.+-........... ..........+..++++..++.|..+|+++++. +........ .+..-...
T Consensus 98 ~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~-----~w~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (238)
T PF13360_consen 98 VLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL-----LWKYPVGEPRGSSPISSFSDINGSPVI 171 (238)
T ss_dssp EEEEEEE-SSCTCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEE-----EEEEESSTT-SS--EEEETTEEEEEEC
T ss_pred eeeeeccccccccc-cccccCceEecCEEEEEeccCcEEEEecCCCcE-----EEEeecCCCCCCcceeeecccccceEE
Confidence 65553211111111 122223333477888888899999999998853 222221111 11122222
Q ss_pred cCCCEEEEEeCCCc-EEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chh
Q 048511 232 RSSDYLLSVSHDQT-TRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSF 309 (351)
Q Consensus 232 p~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~ 309 (351)
.++ .++.++.++. +.+ |+.+++ ..|... +. .+..+ ... .+..|+.++.++.|..||+. ++.
T Consensus 172 ~~~-~v~~~~~~g~~~~~-d~~tg~------~~w~~~--~~----~~~~~-~~~--~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 172 SDG-RVYVSSGDGRVVAV-DLATGE------KLWSKP--IS----GIYSL-PSV--DGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp CTT-EEEEECCTSSEEEE-ETTTTE------EEEEEC--SS-----ECEC-EEC--CCTEEEEEETTTEEEEEETTTTEE
T ss_pred ECC-EEEEEcCCCeEEEE-ECCCCC------EEEEec--CC----CccCC-cee--eCCEEEEEeCCCEEEEEECCCCCE
Confidence 244 6666677775 555 998887 234221 11 12221 223 56777777799999999987 543
No 298
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.70 E-value=2.6e-05 Score=69.05 Aligned_cols=198 Identities=9% Similarity=0.024 Sum_probs=113.6
Q ss_pred ceeEEEeeCCcccCCCCCccE-EEEeeCC---CcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEE
Q 048511 31 WIRSLDFSLPVCTSGEAISIL-LVSSSQD---KVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSV 106 (351)
Q Consensus 31 ~V~~l~~~~~~~~~~~~~~~~-l~t~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 106 (351)
.+..-.|+ |+++. ++..+.+ ..|.++|+.+++....
T Consensus 189 ~~~~p~wS--------pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l-------------------------------- 228 (419)
T PRK04043 189 LNIFPKWA--------NKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI-------------------------------- 228 (419)
T ss_pred CeEeEEEC--------CCCCcEEEEEEccCCCCEEEEEECCCCcEEEE--------------------------------
Confidence 66788899 77874 5544433 4577778766543211
Q ss_pred EEeccccccceEEEEecCCCCCCCCCcccCCCceeE-EeecC--CeEEEEeccCCCcceEEEEEeccccccccceEEEEE
Q 048511 107 ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSIL-SASMD--KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHW 183 (351)
Q Consensus 107 ~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~-s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 183 (351)
....+......|+ ||++. ++ +.+.+ ..|.++|+.. +... .+. ..........|
T Consensus 229 ----t~~~g~~~~~~~S------PDG~~------la~~~~~~g~~~Iy~~dl~~--g~~~-~LT-----~~~~~d~~p~~ 284 (419)
T PRK04043 229 ----ASSQGMLVVSDVS------KDGSK------LLLTMAPKGQPDIYLYDTNT--KTLT-QIT-----NYPGIDVNGNF 284 (419)
T ss_pred ----ecCCCcEEeeEEC------CCCCE------EEEEEccCCCcEEEEEECCC--CcEE-Ecc-----cCCCccCccEE
Confidence 1123345566788 67765 44 34333 4677778776 4322 222 11212234579
Q ss_pred cCCCCEEEEEee-CC--eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCC---------CcEEEEcC
Q 048511 184 SPDGRSILAHGY-GG--AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD---------QTTRVFAP 251 (351)
Q Consensus 184 ~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d---------g~i~vwd~ 251 (351)
+|||+.|+-.+. .+ .|.++|+.+++.. ..+..+. . ...|+|+|++|+..+.. ..|.+.|+
T Consensus 285 SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~----rlt~~g~--~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~ 356 (419)
T PRK04043 285 VEDDKRIVFVSDRLGYPNIFMKKLNSGSVE----QVVFHGK--N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLIST 356 (419)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCeE----eCccCCC--c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEEC
Confidence 999987766553 33 5777787776421 1111111 1 24899999988766543 36788888
Q ss_pred CCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC---CeEEEEecCchhhhcee
Q 048511 252 WKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE---KVARVFEAPLSFLKTLN 314 (351)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---g~v~vw~~~~~~~~~~~ 314 (351)
..+.. +.+... .......|+| ||+.|+-.+.+ ..+.+.++.+.....+.
T Consensus 357 ~~g~~--------~~LT~~----~~~~~p~~SP--DG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 357 NSDYI--------RRLTAN----GVNQFPRFSS--DGGSIMFIKYLGNQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred CCCCe--------EECCCC----CCcCCeEECC--CCCEEEEEEccCCcEEEEEEecCCCeeEEee
Confidence 76651 222221 1223578999 88877655432 24666777776665554
No 299
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.69 E-value=5.5e-06 Score=78.30 Aligned_cols=233 Identities=12% Similarity=0.093 Sum_probs=144.9
Q ss_pred CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEE
Q 048511 29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES 108 (351)
Q Consensus 29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 108 (351)
.+.|.++.|. .+..-++.+..+|.|.+-|..+... .........+.++.|+||+..++.......+.+..
T Consensus 68 d~~i~s~~fl--------~d~~~i~v~~~~G~iilvd~et~~~--eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT 137 (1265)
T KOG1920|consen 68 DDEIVSVQFL--------ADTNSICVITALGDIILVDPETLEL--EIVGNVDNGISAASWSPDEELLALITGRQTLLFMT 137 (1265)
T ss_pred CcceEEEEEe--------cccceEEEEecCCcEEEEcccccce--eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe
Confidence 3589999999 7777888888889998887765533 23333356888999999999888765544332111
Q ss_pred -------------------------------ecccc---------------------ccceEEEEecCCCCCCCCCcccC
Q 048511 109 -------------------------------LLIGH---------------------EDWVYSVQWEPPSTAPSDGVSCQ 136 (351)
Q Consensus 109 -------------------------------~~~~h---------------------~~~v~~l~~~p~~~~~~~~~~~~ 136 (351)
.+.|. .+.=+++.|- .||++
T Consensus 138 ~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWR------gDg~~-- 209 (1265)
T KOG1920|consen 138 KDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWR------GDGEY-- 209 (1265)
T ss_pred ccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEc------cCCcE--
Confidence 01110 0112347888 78888
Q ss_pred CCceeEEee-----cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe---eCCeEEEEEcccCc
Q 048511 137 QPSSILSAS-----MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG---YGGAFHLWRNVGVD 208 (351)
Q Consensus 137 ~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~dg~i~~~d~~~~~ 208 (351)
+|+.. ..+.|++||-+. ..-..-. .....-.+++|-|.|..+++-. .|+.|.+|..+.-+
T Consensus 210 ----fAVs~~~~~~~~RkirV~drEg---~Lns~se-----~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~ 277 (1265)
T KOG1920|consen 210 ----FAVSFVESETGTRKIRVYDREG---ALNSTSE-----PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR 277 (1265)
T ss_pred ----EEEEEEeccCCceeEEEecccc---hhhcccC-----cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc
Confidence 88732 237899999772 1111111 1222335799999999888754 45679999876654
Q ss_pred ccCcccccccccccccEEEEEeecCCCEEEE---EeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeee
Q 048511 209 IDNWQPQKVPSGHFAAVMDISWSRSSDYLLS---VSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQG 285 (351)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s---~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 285 (351)
...+... +......|..++|+.++..|++ ......|++|-+.+. .|............. +.|+|.
T Consensus 278 hg~f~l~--~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny--------hWYLKq~l~~~~~~~--~~W~p~ 345 (1265)
T KOG1920|consen 278 HGEFVLP--FPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY--------HWYLKQELQFSQKAL--LMWDPV 345 (1265)
T ss_pred ccccccC--CcccccchheeeecCCCCceeeeecccccceEEEEEecCe--------EEEEEEEEecccccc--ccccCC
Confidence 4333222 2223344899999999999987 444556999988665 355554444433333 677774
Q ss_pred CCCcEEEEecCCCeEEEEe
Q 048511 286 KGNHRFVSGADEKVARVFE 304 (351)
Q Consensus 286 ~~~~~l~s~~~dg~v~vw~ 304 (351)
....+.+.+ .+|...+++
T Consensus 346 ~~~~L~v~~-~sG~~~v~~ 363 (1265)
T KOG1920|consen 346 TEKTLHVLR-ESGQRLVRD 363 (1265)
T ss_pred CceeEEEEe-cCCcEEEEE
Confidence 333333443 555555544
No 300
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=2.8e-07 Score=77.65 Aligned_cols=234 Identities=14% Similarity=0.101 Sum_probs=148.4
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC-CCcEEEEecCCCcccceeeccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ-DKVIRIWKLALRGSSANTQSTY 79 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~ 79 (351)
+++.||.++.|......-...+..+.+|.+.|.+++.+ -++-++.|.+. |..++++|+.+......+....
T Consensus 25 qASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S--------~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~ 96 (558)
T KOG0882|consen 25 QASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVS--------YDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVD 96 (558)
T ss_pred eeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcc--------ccceeEeeccCcccceeEEEeeccchhhhccccc
Confidence 47889999999765411134566778899999999999 88999999777 9999999998766553333322
Q ss_pred ccceeeeEeeec-------------CCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec
Q 048511 80 RKEVISLASYIE-------------GPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM 146 (351)
Q Consensus 80 ~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~ 146 (351)
-+....+..++. +...+.............-.-|..+|.++.++ +.+.. +++...
T Consensus 97 lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~------qa~Ds------~vSiD~ 164 (558)
T KOG0882|consen 97 LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYN------QAGDS------AVSIDI 164 (558)
T ss_pred CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEee------ccccc------eeeccc
Confidence 222222222222 22222211111112222234588999999999 67777 899988
Q ss_pred CCeEEEEeccC----CCcceEEEE----EeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccC-------
Q 048511 147 DKTMMIWQPEK----TTGIWMNVV----TVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDN------- 211 (351)
Q Consensus 147 d~~i~iwd~~~----~~~~~~~~~----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~------- 211 (351)
.|.|.-|.... .+......+ .+...........++.|+|++..+.+-+.|..|+++++.+++...
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t 244 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLT 244 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccch
Confidence 99999999873 001111011 111123345567899999999999999999999999998874310
Q ss_pred ---ccc-----------------ccccccccc-cEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511 212 ---WQP-----------------QKVPSGHFA-AVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 212 ---~~~-----------------~~~~~~~~~-~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
+++ .+.+..|.. .-+.+.|...+++|+-++.=| |+|.++.++.
T Consensus 245 ~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~ 308 (558)
T KOG0882|consen 245 DAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNT 308 (558)
T ss_pred hhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCe
Confidence 000 001111222 234577888899988776543 6777776665
No 301
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.66 E-value=1.2e-05 Score=64.34 Aligned_cols=179 Identities=13% Similarity=0.092 Sum_probs=109.9
Q ss_pred eeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEecc
Q 048511 32 IRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLI 111 (351)
Q Consensus 32 V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 111 (351)
=.-++|+ +++.+||.+...|+|+++|+..... ..+.... .+ ..
T Consensus 46 WRkl~WS--------pD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~-------~~---------------------~~ 88 (282)
T PF15492_consen 46 WRKLAWS--------PDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAM-------SF---------------------PG 88 (282)
T ss_pred heEEEEC--------CCCcEEEEEcCCCeEEEEeccccee-EEcCccc-------cc---------------------CC
Confidence 4678999 8899999999999999999975332 2121100 00 00
Q ss_pred ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC---CCcceEEEEEeccccccccceEEEEEcCCCC
Q 048511 112 GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK---TTGIWMNVVTVGELSHSALGFYGGHWSPDGR 188 (351)
Q Consensus 112 ~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 188 (351)
.-...|..+.|.+....+.-... |+.-..+|.++-|-+.. .+......+.+ .......|.++.++|..+
T Consensus 89 d~~~Aiagl~Fl~~~~s~~ws~E------Llvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf--~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 89 DLSDAIAGLIFLEYKKSAQWSYE------LLVINYRGQLRSYLVSVGTNQGYQENHSFSF--SSHYPHGINSAVYHPKHR 160 (282)
T ss_pred ccccceeeeEeecccccccccee------EEEEeccceeeeEEEEcccCCcceeeEEEEe--cccCCCceeEEEEcCCCC
Confidence 12345566666532210000112 66777888888777643 11233333433 234567899999999999
Q ss_pred EEEEEeeC----C-------eEEEEEcccCccc----------------Ccccc--cc------cccccccEEEEEeecC
Q 048511 189 SILAHGYG----G-------AFHLWRNVGVDID----------------NWQPQ--KV------PSGHFAAVMDISWSRS 233 (351)
Q Consensus 189 ~l~~~~~d----g-------~i~~~d~~~~~~~----------------~~~~~--~~------~~~~~~~v~~v~~sp~ 233 (351)
.|++|+.. + -+.-|.+-....- ..... .. .......|..|..|||
T Consensus 161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd 240 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD 240 (282)
T ss_pred EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCC
Confidence 88887632 1 2566765433110 00000 00 0123567999999999
Q ss_pred CCEEEEEeCCCcEEEEcCCCcc
Q 048511 234 SDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 234 ~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
|..||+...+|.|.+|++.+-.
T Consensus 241 g~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 241 GSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred CCEEEEEEcCCeEEEEecCcch
Confidence 9999999999999999998765
No 302
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.65 E-value=1.5e-08 Score=88.69 Aligned_cols=212 Identities=13% Similarity=0.116 Sum_probs=131.0
Q ss_pred CceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEe
Q 048511 30 DWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL 109 (351)
Q Consensus 30 ~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 109 (351)
..+.|+++. -+ .+...++.|..+|.|.+-.+...... -+..
T Consensus 57 qy~kcva~~----y~--~d~cIlavG~atG~I~l~s~r~~hdS---------------------------------s~E~ 97 (783)
T KOG1008|consen 57 QYVKCVASF----YG--NDRCILAVGSATGNISLLSVRHPHDS---------------------------------SAEV 97 (783)
T ss_pred CCceeehhh----cC--CchhhhhhccccCceEEeecCCcccc---------------------------------ccee
Confidence 345666655 11 23346677777787777666543221 1123
Q ss_pred ccccccceEEEEecCCCCCCCCCcccCCCceeEEee----cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC
Q 048511 110 LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS----MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP 185 (351)
Q Consensus 110 ~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~ 185 (351)
..+|..+.++++|++ -|.+. ||.|- .|..+.|||+.+.-..+.....+.. .......+++|..
T Consensus 98 tp~~ar~Ct~lAwne-----LDtn~------LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~--~~l~gqns~cwlr 164 (783)
T KOG1008|consen 98 TPGYARPCTSLAWNE-----LDTNH------LAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSS--STLDGQNSVCWLR 164 (783)
T ss_pred ccccccccccccccc-----ccHHH------HHhhhhhhcccCCccceecccccCCCcccccccc--ccccCcccccccc
Confidence 456778899999997 66677 77774 3677999999872112222222111 1233455899998
Q ss_pred CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec-CCCEEEEEeCCCcEEEEc-CCCccccccCccc
Q 048511 186 DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR-SSDYLLSVSHDQTTRVFA-PWKNVASLMGENS 263 (351)
Q Consensus 186 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~s~~~dg~i~vwd-~~~~~~~~~~~~~ 263 (351)
+.+.+++|.....+.++|++... .....-....+..+...| .+.++++-. ||.|.+|| .++-+.. .
T Consensus 165 d~klvlaGm~sr~~~ifdlRqs~------~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienp-----l 232 (783)
T KOG1008|consen 165 DTKLVLAGMTSRSVHIFDLRQSL------DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENP-----L 232 (783)
T ss_pred Ccchhhcccccchhhhhhhhhhh------hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccH-----H
Confidence 88999999999999999998532 222122334567778888 777888765 99999999 4333310 0
Q ss_pred eEEeccccccccceeEEEEeeeCCCcEEEEec-CCCeEEEEecC
Q 048511 264 WHEVARPQVHGHDINCVTIIQGKGNHRFVSGA-DEKVARVFEAP 306 (351)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~dg~v~vw~~~ 306 (351)
...+.........+..++|+|...| ++++.. +.++|+++++.
T Consensus 233 ~~i~~~~N~~~~~l~~~aycPtrtg-lla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 233 QIILRNENKKPKQLFALAYCPTRTG-LLAVLSRDSITIRLYDIC 275 (783)
T ss_pred HHHhhCCCCcccceeeEEeccCCcc-hhhhhccCcceEEEeccc
Confidence 0011111111224889999995544 555555 66789999864
No 303
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.62 E-value=6.7e-05 Score=61.90 Aligned_cols=234 Identities=15% Similarity=0.124 Sum_probs=129.0
Q ss_pred EEEEEccCCCceEEEEeeeecCCce--eEEEeeCCcccCCCCCccEEEEee-----CCCcEEEEecCCCcccceeecccc
Q 048511 8 IHLYRGQRTGKFVRACELKGHTDWI--RSLDFSLPVCTSGEAISILLVSSS-----QDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 8 i~vw~~~~~~~~~~~~~~~~h~~~V--~~l~~~~~~~~~~~~~~~~l~t~~-----~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
..+||..+ ++.. ..+..-.+.- =.-.|+ ++|++|+|.- ..|.|-|||....-..........
T Consensus 30 ~~v~D~~~-g~~~--~~~~a~~gRHFyGHg~fs--------~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~G 98 (305)
T PF07433_consen 30 ALVFDCRT-GQLL--QRLWAPPGRHFYGHGVFS--------PDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHG 98 (305)
T ss_pred EEEEEcCC-Ccee--eEEcCCCCCEEecCEEEc--------CCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCC
Confidence 56778777 5332 2222212111 125788 8899999874 358899999984333222233334
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG 160 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 160 (351)
-..-.+.+.++|+.|+++..-.. .| | ..++. .|=....+..+...|..+ +
T Consensus 99 IGPHel~l~pDG~tLvVANGGI~--------Th----------p-----d~GR~-----kLNl~tM~psL~~ld~~s--G 148 (305)
T PF07433_consen 99 IGPHELLLMPDGETLVVANGGIE--------TH----------P-----DSGRA-----KLNLDTMQPSLVYLDARS--G 148 (305)
T ss_pred cChhhEEEcCCCCEEEEEcCCCc--------cC----------c-----ccCce-----ecChhhcCCceEEEecCC--C
Confidence 45567778888877776542211 11 1 00010 022233455566667776 6
Q ss_pred ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCe-------EEEEEcccCcccCcccccccccccccEEEEEeecC
Q 048511 161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGA-------FHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS 233 (351)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~-------i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 233 (351)
..+....+.. ..|...|..+++.++|..++..-..|. |.+++....-.....+......-...+-+|+++++
T Consensus 149 ~ll~q~~Lp~-~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~ 227 (305)
T PF07433_consen 149 ALLEQVELPP-DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRD 227 (305)
T ss_pred ceeeeeecCc-cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCC
Confidence 6666544311 246778999999999886665443332 33443322100000000112233567999999999
Q ss_pred CCEEEE-EeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCC
Q 048511 234 SDYLLS-VSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEK 298 (351)
Q Consensus 234 ~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg 298 (351)
+.++++ +-.-+.+.+||..++. .+..... ..+..++..+ ++ ++++.+...
T Consensus 228 g~~ia~tsPrGg~~~~~d~~tg~----------~~~~~~l--~D~cGva~~~--~~-f~~ssG~G~ 278 (305)
T PF07433_consen 228 GRLIAVTSPRGGRVAVWDAATGR----------LLGSVPL--PDACGVAPTD--DG-FLVSSGQGQ 278 (305)
T ss_pred CCEEEEECCCCCEEEEEECCCCC----------Eeecccc--CceeeeeecC--Cc-eEEeCCCcc
Confidence 987754 4457899999998887 3332221 2355666655 44 555555543
No 304
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.62 E-value=8.8e-06 Score=69.91 Aligned_cols=193 Identities=14% Similarity=0.167 Sum_probs=122.8
Q ss_pred CceeEEEeeCCcccCCCCCccEEEE-----eeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCc---
Q 048511 30 DWIRSLDFSLPVCTSGEAISILLVS-----SSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSS--- 101 (351)
Q Consensus 30 ~~V~~l~~~~~~~~~~~~~~~~l~t-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 101 (351)
..|+...|+ |. .++..||. .+.++++++|.+.....+... .........+.|.+.|.++++-...
T Consensus 174 ~gi~dFsis----P~--~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk-~lfk~~~~qLkW~~~g~~ll~l~~t~~k 246 (561)
T COG5354 174 VGILDFSIS----PE--GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK-NLFKVSGVQLKWQVLGKYLLVLVMTHTK 246 (561)
T ss_pred cceeeEEec----CC--CCCceEEEEccccCCCCcEEEEEEccCCCeeeee-eeEeecccEEEEecCCceEEEEEEEeee
Confidence 567778888 32 23444553 367889999999855443322 2223456678888888877762100
Q ss_pred --------eeEEEEE-------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEE
Q 048511 102 --------YQVSVES-------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVV 166 (351)
Q Consensus 102 --------~~~~~~~-------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 166 (351)
..+.+.. ....-.++|....|.| .++. .-+++|-.+-.+.++|++. . ....+
T Consensus 247 snKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p------~S~~----F~vi~g~~pa~~s~~~lr~--N-l~~~~ 313 (561)
T COG5354 247 SNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEP------LSSR----FAVISGYMPASVSVFDLRG--N-LRFYF 313 (561)
T ss_pred cccceeccceEEEEeecccccceeccccccceeeeecc------cCCc----eeEEecccccceeeccccc--c-eEEec
Confidence 1111111 1124478999999995 4444 0134455788999999986 3 22222
Q ss_pred EeccccccccceEEEEEcCCCCEEEEEeeC---CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe--
Q 048511 167 TVGELSHSALGFYGGHWSPDGRSILAHGYG---GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS-- 241 (351)
Q Consensus 167 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-- 241 (351)
....=..+.|+|.+++++.++.| |.+-+||..... .++..+.+.. ..-+.|+|+++++.+..
T Consensus 314 -------Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf----~~~~~~~~~n--~s~~~wspd~qF~~~~~ts 380 (561)
T COG5354 314 -------PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF----KVAGAFNGLN--TSYCDWSPDGQFYDTDTTS 380 (561)
T ss_pred -------CCcccccccccCcccEEEEecCCccccceEEeccCCce----EEEEEeecCC--ceEeeccCCceEEEecCCC
Confidence 22233567899999999998876 789999987752 4443555433 34468999999987664
Q ss_pred ----CCCcEEEEcCCCcc
Q 048511 242 ----HDQTTRVFAPWKNV 255 (351)
Q Consensus 242 ----~dg~i~vwd~~~~~ 255 (351)
.|..|.|||+....
T Consensus 381 ~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 381 EKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred cccccCcceEEEEecCch
Confidence 37889999986554
No 305
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.61 E-value=0.00013 Score=60.10 Aligned_cols=149 Identities=14% Similarity=0.080 Sum_probs=88.3
Q ss_pred ccceEEEEecCCCCCCCCCcccCCCceeEEeecC--------CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC
Q 048511 114 EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD--------KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP 185 (351)
Q Consensus 114 ~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~ 185 (351)
....+.+++. ++|++ .++.... |.|..++.. ++..... ..-.....++|+|
T Consensus 85 ~~~~ND~~vd------~~G~l------y~t~~~~~~~~~~~~g~v~~~~~~---~~~~~~~------~~~~~pNGi~~s~ 143 (246)
T PF08450_consen 85 FNRPNDVAVD------PDGNL------YVTDSGGGGASGIDPGSVYRIDPD---GKVTVVA------DGLGFPNGIAFSP 143 (246)
T ss_dssp TEEEEEEEE-------TTS-E------EEEEECCBCTTCGGSEEEEEEETT---SEEEEEE------EEESSEEEEEEET
T ss_pred cCCCceEEEc------CCCCE------EEEecCCCccccccccceEEECCC---CeEEEEe------cCcccccceEECC
Confidence 3467888898 67877 7765543 445555554 2221111 1223467899999
Q ss_pred CCCEEEE-EeeCCeEEEEEcccCcc--cCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCcc
Q 048511 186 DGRSILA-HGYGGAFHLWRNVGVDI--DNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGEN 262 (351)
Q Consensus 186 ~~~~l~~-~~~dg~i~~~d~~~~~~--~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 262 (351)
+++.|+. -+..+.|..|++..... ........+....+..-.+++..+|++.++.-..+.|.++|.. ++
T Consensus 144 dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~------- 215 (246)
T PF08450_consen 144 DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GK------- 215 (246)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SC-------
T ss_pred cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-cc-------
Confidence 9997764 55678999999964321 0011122233333457889999999988887788999999987 54
Q ss_pred ceEEeccccccccceeEEEEeeeCCCcEEEEe
Q 048511 263 SWHEVARPQVHGHDINCVTIIQGKGNHRFVSG 294 (351)
Q Consensus 263 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~ 294 (351)
....+. .....+++++|-..+.+.+++|.
T Consensus 216 ~~~~i~---~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 216 LLREIE---LPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEE----SSSSEEEEEEESTTSSEEEEEE
T ss_pred EEEEEc---CCCCCEEEEEEECCCCCEEEEEe
Confidence 122332 22346899999531234455554
No 306
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.58 E-value=1.3e-05 Score=70.44 Aligned_cols=75 Identities=11% Similarity=0.031 Sum_probs=62.6
Q ss_pred ccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCC
Q 048511 173 HSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPW 252 (351)
Q Consensus 173 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~ 252 (351)
.....+.+.+++|+...++.|+.||.|.+||...+. ..+....-.++.++|+|+|.++++|+..|.+.+||+.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~-------t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV-------TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe-------eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 355679999999999999999999999999997752 2222344567889999999999999999999999986
Q ss_pred Cc
Q 048511 253 KN 254 (351)
Q Consensus 253 ~~ 254 (351)
-.
T Consensus 330 Ls 331 (545)
T PF11768_consen 330 LS 331 (545)
T ss_pred cC
Confidence 44
No 307
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=2.2e-05 Score=71.71 Aligned_cols=197 Identities=13% Similarity=0.123 Sum_probs=125.5
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCc-eeEEEeeCCcccCCCCCccEEEEeeCCCc-----EEEEecCCCccccee
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDW-IRSLDFSLPVCTSGEAISILLVSSSQDKV-----IRIWKLALRGSSANT 75 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~-V~~l~~~~~~~~~~~~~~~~l~t~~~dg~-----i~iwd~~~~~~~~~~ 75 (351)
|+.+|.|.+.+-.- +....++++... |+.+... ....+|++.+.|+. |+||+++.-+.....
T Consensus 41 gt~~G~V~~Ln~s~----~~~~~fqa~~~siv~~L~~~--------~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 41 GTADGRVVILNSSF----QLIRGFQAYEQSIVQFLYIL--------NKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred eeccccEEEecccc----eeeehheecchhhhhHhhcc--------cCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 45666666655433 555778888877 6656555 44578888887754 899999754321100
Q ss_pred ecccccceeeeEeeecCCeEEecCCceeEEEEE-eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEe
Q 048511 76 QSTYRKEVISLASYIEGPVLVAGSSSYQVSVES-LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQ 154 (351)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd 154 (351)
. .. +..++.. .......++.+++++ .+-+. +|.|-.+|.|..+.
T Consensus 109 ~------c~-----------------~~~ri~~~~np~~~~p~s~l~Vs------~~l~~------Iv~Gf~nG~V~~~~ 153 (933)
T KOG2114|consen 109 Q------CL-----------------YEHRIFTIKNPTNPSPASSLAVS------EDLKT------IVCGFTNGLVICYK 153 (933)
T ss_pred c------ee-----------------eeeeeeccCCCCCCCcceEEEEE------ccccE------EEEEecCcEEEEEc
Confidence 0 00 0001111 112245678899999 67777 99999999999886
Q ss_pred ccC--CCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511 155 PEK--TTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR 232 (351)
Q Consensus 155 ~~~--~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 232 (351)
-.- ..+.. ..+. .....+|+.+++..+++.++-...-..|.+|.+.+.. .....+..|...+.+..+++
T Consensus 154 GDi~RDrgsr-~~~~----~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~----p~~~~ld~~G~~lnCss~~~ 224 (933)
T KOG2114|consen 154 GDILRDRGSR-QDYS----HRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT----PSLKVLDNNGISLNCSSFSD 224 (933)
T ss_pred Ccchhccccc-eeee----ccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC----cceeeeccCCccceeeecCC
Confidence 321 11221 1111 2345689999999888874445556679999998542 12445777888899999998
Q ss_pred CCCEEEEEeCCCcEEEEcCCCcc
Q 048511 233 SSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 233 ~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
....|++++ +..+.+||.....
T Consensus 225 ~t~qfIca~-~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 225 GTYQFICAG-SEFLYFYDSDGRG 246 (933)
T ss_pred CCccEEEec-CceEEEEcCCCcc
Confidence 766566554 4579999987654
No 308
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.56 E-value=5.2e-05 Score=67.15 Aligned_cols=250 Identities=12% Similarity=0.065 Sum_probs=126.9
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK 81 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~ 81 (351)
++.+|.++.+|.++ |+. +...+.. +.+.+--. -.+..++.+..++.|..+|..+++.+.........
T Consensus 126 ~~~~g~l~ald~~t-G~~--~W~~~~~-~~~~ssP~---------v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~ 192 (394)
T PRK11138 126 GSEKGQVYALNAED-GEV--AWQTKVA-GEALSRPV---------VSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPS 192 (394)
T ss_pred EcCCCEEEEEECCC-CCC--cccccCC-CceecCCE---------EECCEEEEECCCCEEEEEEccCCCEeeeecCCCCc
Confidence 45677888888877 643 2222221 12221111 12346666777899999999998877655432110
Q ss_pred c----eeeeEeeecCCeEEecCCceeEEEEEeccccccce---------------EEEEecCCCCCCCCCcccCCCceeE
Q 048511 82 E----VISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWV---------------YSVQWEPPSTAPSDGVSCQQPSSIL 142 (351)
Q Consensus 82 ~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v---------------~~l~~~p~~~~~~~~~~~~~~~~l~ 142 (351)
. ..+... .+..++++..++.+..+....+...+- ..+..+|- -.+.. +.
T Consensus 193 ~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~----v~~~~------vy 260 (394)
T PRK11138 193 LTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPV----VVGGV------VY 260 (394)
T ss_pred ccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcE----EECCE------EE
Confidence 0 000011 122233333344333322222211100 00111110 01223 66
Q ss_pred EeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccccc
Q 048511 143 SASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHF 222 (351)
Q Consensus 143 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~ 222 (351)
.++.++.+..+|+.+ ++.+-..... . ...+. ..+..++.++.+|.+..+|..+++.. |+. ..+ .+
T Consensus 261 ~~~~~g~l~ald~~t--G~~~W~~~~~---~----~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~-W~~-~~~-~~- 325 (394)
T PRK11138 261 ALAYNGNLVALDLRS--GQIVWKREYG---S----VNDFA--VDGGRIYLVDQNDRVYALDTRGGVEL-WSQ-SDL-LH- 325 (394)
T ss_pred EEEcCCeEEEEECCC--CCEEEeecCC---C----ccCcE--EECCEEEEEcCCCeEEEEECCCCcEE-Ecc-ccc-CC-
Confidence 677899999999998 5433322211 1 11122 24567888889999999999887421 110 001 11
Q ss_pred ccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEE
Q 048511 223 AAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARV 302 (351)
Q Consensus 223 ~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~v 302 (351)
....+... .+.+|+.++.||.+.+.|..+++ .+.+.......+..--... +..|+.++.||.|..
T Consensus 326 ~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~----------~~~~~~~~~~~~~s~P~~~---~~~l~v~t~~G~l~~ 390 (394)
T PRK11138 326 RLLTAPVL--YNGYLVVGDSEGYLHWINREDGR----------FVAQQKVDSSGFLSEPVVA---DDKLLIQARDGTVYA 390 (394)
T ss_pred CcccCCEE--ECCEEEEEeCCCEEEEEECCCCC----------EEEEEEcCCCcceeCCEEE---CCEEEEEeCCceEEE
Confidence 11111111 24567888999999999998887 2222222222222211112 447888899999988
Q ss_pred EecC
Q 048511 303 FEAP 306 (351)
Q Consensus 303 w~~~ 306 (351)
++++
T Consensus 391 ~~~~ 394 (394)
T PRK11138 391 ITRP 394 (394)
T ss_pred EeCC
Confidence 8753
No 309
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.56 E-value=1.6e-06 Score=79.41 Aligned_cols=176 Identities=9% Similarity=0.032 Sum_probs=116.0
Q ss_pred CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccccee
Q 048511 5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 84 (351)
...+..+|..+ .+ ......--.+.|+-|+.+ +++|.+|...|+|.+-|.++.+
T Consensus 156 Q~~li~~Dl~~-~~--e~r~~~v~a~~v~imR~N----------nr~lf~G~t~G~V~LrD~~s~~-------------- 208 (1118)
T KOG1275|consen 156 QEKLIHIDLNT-EK--ETRTTNVSASGVTIMRYN----------NRNLFCGDTRGTVFLRDPNSFE-------------- 208 (1118)
T ss_pred hhheeeeeccc-ce--eeeeeeccCCceEEEEec----------CcEEEeecccceEEeecCCcCc--------------
Confidence 34455566655 32 222222223346666655 6788888888888888877653
Q ss_pred eeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec---------CCeEEEEec
Q 048511 85 SLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM---------DKTMMIWQP 155 (351)
Q Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~---------d~~i~iwd~ 155 (351)
.++.+..|++.|..+... |++ |++++. |..|+|||+
T Consensus 209 ---------------------~iht~~aHs~siSDfDv~--------GNl------LitCG~S~R~~~l~~D~FvkVYDL 253 (1118)
T KOG1275|consen 209 ---------------------TIHTFDAHSGSISDFDVQ--------GNL------LITCGYSMRRYNLAMDPFVKVYDL 253 (1118)
T ss_pred ---------------------eeeeeeccccceeeeecc--------CCe------EEEeecccccccccccchhhhhhh
Confidence 335677899999888765 667 888874 677999999
Q ss_pred cCCCcceEEEEEeccccccccceEEEEEcCCC-CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCC
Q 048511 156 EKTTGIWMNVVTVGELSHSALGFYGGHWSPDG-RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSS 234 (351)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~ 234 (351)
+. -..+..+. .+.+ ..-+.|+|.- ..+++++..|...+-|..+-... ..-++.+......+.++++++++
T Consensus 254 Rm--mral~PI~-----~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP-~~~~~~v~p~~s~i~~fDiSsn~ 324 (1118)
T KOG1275|consen 254 RM--MRALSPIQ-----FPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP-PAGVKMVNPNGSGISAFDISSNG 324 (1118)
T ss_pred hh--hhccCCcc-----cccC-chhhhhcccccceEEEEecccceeeccccccCCC-ccceeEEccCCCcceeEEecCCC
Confidence 98 44433333 1111 2446778853 57888999999999984322100 01122333344569999999999
Q ss_pred CEEEEEeCCCcEEEEcC
Q 048511 235 DYLLSVSHDQTTRVFAP 251 (351)
Q Consensus 235 ~~l~s~~~dg~i~vwd~ 251 (351)
+.++.|..+|.|.+|.-
T Consensus 325 ~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 325 DALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ceEEEecccCcEeeecC
Confidence 99999999999999983
No 310
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=1.2e-05 Score=73.38 Aligned_cols=154 Identities=12% Similarity=0.135 Sum_probs=98.7
Q ss_pred eEEeecCC-----eEEEEeccCCC----cceEEEEEecc--ccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcc
Q 048511 141 ILSASMDK-----TMMIWQPEKTT----GIWMNVVTVGE--LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDI 209 (351)
Q Consensus 141 l~s~~~d~-----~i~iwd~~~~~----~~~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 209 (351)
|++.+.|+ .++|||++..+ ..++....+.. .+....++.+++.+.+-+.+++|-.+|.|..+.-+-.+.
T Consensus 80 L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RD 159 (933)
T KOG2114|consen 80 LFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRD 159 (933)
T ss_pred EEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhc
Confidence 77777665 49999998642 22332222222 233567889999999999999999999999985422111
Q ss_pred cCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCc
Q 048511 210 DNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNH 289 (351)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 289 (351)
+..+ ..-......+|+++.+..++..++-...-..|.+|.+.... -.......|+.++.|.++++ ...
T Consensus 160 rgsr-~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~---------p~~~~ld~~G~~lnCss~~~--~t~ 227 (933)
T KOG2114|consen 160 RGSR-QDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT---------PSLKVLDNNGISLNCSSFSD--GTY 227 (933)
T ss_pred cccc-eeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC---------cceeeeccCCccceeeecCC--CCc
Confidence 1011 11122245689999999998873333345679999987433 12333557888899999998 334
Q ss_pred EEEEecCCCeEEEEecCc
Q 048511 290 RFVSGADEKVARVFEAPL 307 (351)
Q Consensus 290 ~l~s~~~dg~v~vw~~~~ 307 (351)
.|++++. ..+.+|+.++
T Consensus 228 qfIca~~-e~l~fY~sd~ 244 (933)
T KOG2114|consen 228 QFICAGS-EFLYFYDSDG 244 (933)
T ss_pred cEEEecC-ceEEEEcCCC
Confidence 3444433 3678888773
No 311
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.54 E-value=1.1e-07 Score=83.61 Aligned_cols=242 Identities=14% Similarity=0.170 Sum_probs=142.3
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEee----CCCcEEEEecCCCcccceee
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSS----QDKVIRIWKLALRGSSANTQ 76 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~----~dg~i~iwd~~~~~~~~~~~ 76 (351)
+|..+|.|-+-.+.. .....-....+|....++++|+ + -|.+.||.|- .|..+.|||+.+.-......
T Consensus 75 vG~atG~I~l~s~r~-~hdSs~E~tp~~ar~Ct~lAwn----e---LDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~ 146 (783)
T KOG1008|consen 75 VGSATGNISLLSVRH-PHDSSAEVTPGYARPCTSLAWN----E---LDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKES 146 (783)
T ss_pred hccccCceEEeecCC-cccccceecccccccccccccc----c---ccHHHHHhhhhhhcccCCccceecccccCCCccc
Confidence 477889998888776 3222233456788899999999 2 3556777662 45679999998763211000
Q ss_pred cccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEecc
Q 048511 77 STYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPE 156 (351)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 156 (351)
... ..+......+++|. .+.++ +++|...+.++++|++
T Consensus 147 -----------------~~f-------------s~~~l~gqns~cwl------rd~kl------vlaGm~sr~~~ifdlR 184 (783)
T KOG1008|consen 147 -----------------PLF-------------SSSTLDGQNSVCWL------RDTKL------VLAGMTSRSVHIFDLR 184 (783)
T ss_pred -----------------ccc-------------ccccccCccccccc------cCcch------hhcccccchhhhhhhh
Confidence 000 00122334578888 67788 9999999999999999
Q ss_pred CCCcceEEEEEeccccccccceEEEEEcC-CCCEEEEEeeCCeEEEEEc-ccCcccCccccccccccc----ccEEEEEe
Q 048511 157 KTTGIWMNVVTVGELSHSALGFYGGHWSP-DGRSILAHGYGGAFHLWRN-VGVDIDNWQPQKVPSGHF----AAVMDISW 230 (351)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~-~~~~~~~~~~~~~~~~~~----~~v~~v~~ 230 (351)
... ..... ..+..+..+..+| .+.++++.. ||.|.+||. +.-+ .++..+...+ ..+..++|
T Consensus 185 qs~---~~~~s-----vnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnie----npl~~i~~~~N~~~~~l~~~ay 251 (783)
T KOG1008|consen 185 QSL---DSVSS-----VNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIE----NPLQIILRNENKKPKQLFALAY 251 (783)
T ss_pred hhh---hhhhh-----hhhhhcccceecCCCCCceeccc-cCceeeccchhhhc----cHHHHHhhCCCCcccceeeEEe
Confidence 411 11111 2233466678888 667776655 999999994 4332 3444443222 24899999
Q ss_pred ecCC-CEEEEEeC-CCcEEEEcCCCccccccC-ccceEEecc---ccccc--cceeEEEEeeeCCCcEEEEecCCCeEEE
Q 048511 231 SRSS-DYLLSVSH-DQTTRVFAPWKNVASLMG-ENSWHEVAR---PQVHG--HDINCVTIIQGKGNHRFVSGADEKVARV 302 (351)
Q Consensus 231 sp~~-~~l~s~~~-dg~i~vwd~~~~~~~~~~-~~~~~~~~~---~~~~~--~~i~~~~~~~~~~~~~l~s~~~dg~v~v 302 (351)
+|.. ..+++... .++|+++|+......... ......... ++..+ ..|.+..|++...-+..+.+-..-.+.-
T Consensus 252 cPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~D 331 (783)
T KOG1008|consen 252 CPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKD 331 (783)
T ss_pred ccCCcchhhhhccCcceEEEecccccCCcccccccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhh
Confidence 9953 24555554 478999998654321110 011111111 22222 4588888887332344555555555555
Q ss_pred Eec
Q 048511 303 FEA 305 (351)
Q Consensus 303 w~~ 305 (351)
|++
T Consensus 332 f~V 334 (783)
T KOG1008|consen 332 FSV 334 (783)
T ss_pred ccc
Confidence 544
No 312
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=4.6e-06 Score=75.48 Aligned_cols=187 Identities=12% Similarity=0.093 Sum_probs=123.3
Q ss_pred CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEE
Q 048511 29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES 108 (351)
Q Consensus 29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 108 (351)
.+.++|++++ ++.|+-|+.+|.|++.+..... .
T Consensus 39 ~D~is~~av~----------~~~~~~GtH~g~v~~~~~~~~~-~------------------------------------ 71 (846)
T KOG2066|consen 39 NDAISCCAVH----------DKFFALGTHRGAVYLTTCQGNP-K------------------------------------ 71 (846)
T ss_pred hhHHHHHHhh----------cceeeeccccceEEEEecCCcc-c------------------------------------
Confidence 3567788887 7799999999999999876431 1
Q ss_pred eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCC--
Q 048511 109 LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD-- 186 (351)
Q Consensus 109 ~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-- 186 (351)
....|... . .+|.+ +++|+.||.|.|-.+-+ ......+. ...++.+++++|+
T Consensus 72 ~~~~~s~~------~------~~Gey------~asCS~DGkv~I~sl~~--~~~~~~~d------f~rpiksial~Pd~~ 125 (846)
T KOG2066|consen 72 TNFDHSSS------I------LEGEY------VASCSDDGKVVIGSLFT--DDEITQYD------FKRPIKSIALHPDFS 125 (846)
T ss_pred cccccccc------c------cCCce------EEEecCCCcEEEeeccC--CccceeEe------cCCcceeEEeccchh
Confidence 11123222 3 68889 99999999999998887 44333332 2357899999997
Q ss_pred ---CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccc
Q 048511 187 ---GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENS 263 (351)
Q Consensus 187 ---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 263 (351)
.+.+++|+.-| +.++.-+--.. .-...+..-.++|.+++|. |+++|=++.+ -|+|||+..++.
T Consensus 126 ~~~sk~fv~GG~ag-lvL~er~wlgn---k~~v~l~~~eG~I~~i~W~--g~lIAWand~-Gv~vyd~~~~~~------- 191 (846)
T KOG2066|consen 126 RQQSKQFVSGGMAG-LVLSERNWLGN---KDSVVLSEGEGPIHSIKWR--GNLIAWANDD-GVKVYDTPTRQR------- 191 (846)
T ss_pred hhhhhheeecCcce-EEEehhhhhcC---ccceeeecCccceEEEEec--CcEEEEecCC-CcEEEeccccce-------
Confidence 46889999888 77775432110 1111345567899999996 6688877655 589999988762
Q ss_pred eEEecccccc---ccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 264 WHEVARPQVH---GHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 264 ~~~~~~~~~~---~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
...+..+... ..-...+.|.+ ...|+.|-.| +|+|..++
T Consensus 192 l~~i~~p~~~~R~e~fpphl~W~~---~~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 192 LTNIPPPSQSVRPELFPPHLHWQD---EDRLVIGWGD-SVKICSIK 233 (846)
T ss_pred eeccCCCCCCCCcccCCCceEecC---CCeEEEecCC-eEEEEEEe
Confidence 1122111110 11145677876 5667777665 66777665
No 313
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.51 E-value=0.00012 Score=63.95 Aligned_cols=244 Identities=12% Similarity=0.104 Sum_probs=123.5
Q ss_pred ceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccccee--eeEe-eecCCeEEecCC-----ce
Q 048511 31 WIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI--SLAS-YIEGPVLVAGSS-----SY 102 (351)
Q Consensus 31 ~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~l~~~~~-----~~ 102 (351)
.|+.|.|. ++...|+.+...|.|.||.+...+...........+.. .+.. +..+.+.-+..+ ..
T Consensus 3 ~v~~vs~a--------~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFA--------PETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEE--------TTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEec--------CCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCccccc
Confidence 58899999 77778999999999999988755433200000000000 0000 012233333221 11
Q ss_pred eEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecc--c-cccccceE
Q 048511 103 QVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGE--L-SHSALGFY 179 (351)
Q Consensus 103 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--~-~~~~~~i~ 179 (351)
.+.....+....++|++++.+ |--+ +|.|..+|.+.|.|+|. ...+..-.+.+ . ......++
T Consensus 75 gf~P~~l~~~~~g~vtal~~S-------~iGF------vaigy~~G~l~viD~RG--PavI~~~~i~~~~~~~~~~~~vt 139 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS-------DIGF------VAIGYESGSLVVIDLRG--PAVIYNENIRESFLSKSSSSYVT 139 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE--------BTSE------EEEEETTSEEEEEETTT--TEEEEEEEGGG--T-SS----EE
T ss_pred ccCchhheeccCCcEeEEecC-------CCcE------EEEEecCCcEEEEECCC--CeEEeeccccccccccccccCee
Confidence 244455566668999999998 4445 99999999999999987 55555544433 1 12344677
Q ss_pred EEEEcC-----CC---CEEEEEeeCCeEEEEEcccCcccCcc--cccccccccccEEEEE-eecC---------------
Q 048511 180 GGHWSP-----DG---RSILAHGYGGAFHLWRNVGVDIDNWQ--PQKVPSGHFAAVMDIS-WSRS--------------- 233 (351)
Q Consensus 180 ~i~~~~-----~~---~~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~~~~~~v~~v~-~sp~--------------- 233 (351)
++.|.. |+ -.+++|...|.+.+|.+.-.....|. .......+.+.|..+. ++.+
T Consensus 140 ~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l 219 (395)
T PF08596_consen 140 SIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGL 219 (395)
T ss_dssp EEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGG
T ss_pred EEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhcc
Confidence 888762 33 47888999999999988521111111 1111123445555554 3211
Q ss_pred --C---CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEee---eCCCcEEEEecCCCeEEEEec
Q 048511 234 --S---DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQ---GKGNHRFVSGADEKVARVFEA 305 (351)
Q Consensus 234 --~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~l~s~~~dg~v~vw~~ 305 (351)
+ +.++....+..++++...+.+. ..+..........+.+.+ ...+..|++-..+|.|+++.+
T Consensus 220 ~~g~~i~g~vVvvSe~~irv~~~~~~k~----------~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL 289 (395)
T PF08596_consen 220 SKGISIPGYVVVVSESDIRVFKPPKSKG----------AHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL 289 (395)
T ss_dssp GGT----EEEEEE-SSEEEEE-TT---E----------EEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred ccCCCcCcEEEEEcccceEEEeCCCCcc----------cceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence 1 2234444577899999877662 111111111233334421 114778889999999999998
Q ss_pred Cc
Q 048511 306 PL 307 (351)
Q Consensus 306 ~~ 307 (351)
++
T Consensus 290 P~ 291 (395)
T PF08596_consen 290 PS 291 (395)
T ss_dssp TT
T ss_pred CC
Confidence 84
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=2.3e-05 Score=71.08 Aligned_cols=138 Identities=17% Similarity=0.184 Sum_probs=92.8
Q ss_pred CCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeec-----CCeEEecCCceeEEEEE---------eccc
Q 048511 47 AISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIE-----GPVLVAGSSSYQVSVES---------LLIG 112 (351)
Q Consensus 47 ~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~~---------~~~~ 112 (351)
.+|.+++|||.||+|.|-.+.+.+......- ..++.+++++|+ .+.+++|+..+-+-..+ .+..
T Consensus 81 ~~Gey~asCS~DGkv~I~sl~~~~~~~~~df--~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~ 158 (846)
T KOG2066|consen 81 LEGEYVASCSDDGKVVIGSLFTDDEITQYDF--KRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSE 158 (846)
T ss_pred cCCceEEEecCCCcEEEeeccCCccceeEec--CCcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeec
Confidence 4699999999999999999988776554433 347778888886 56777777776321111 2344
Q ss_pred cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecc-ccccccceEEEEEcCCCCEEE
Q 048511 113 HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGE-LSHSALGFYGGHWSPDGRSIL 191 (351)
Q Consensus 113 h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~ 191 (351)
..++|.++.|. |++ +|-++.+| |++||+.. +..+..++... .......-..+.|.++.+ |+
T Consensus 159 ~eG~I~~i~W~--------g~l------IAWand~G-v~vyd~~~--~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LV 220 (846)
T KOG2066|consen 159 GEGPIHSIKWR--------GNL------IAWANDDG-VKVYDTPT--RQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LV 220 (846)
T ss_pred CccceEEEEec--------CcE------EEEecCCC-cEEEeccc--cceeeccCCCCCCCCcccCCCceEecCCCe-EE
Confidence 56789999998 667 88888887 99999988 55444443221 111122334677876654 44
Q ss_pred EEeeCCeEEEEEcc
Q 048511 192 AHGYGGAFHLWRNV 205 (351)
Q Consensus 192 ~~~~dg~i~~~d~~ 205 (351)
.| ...+|++..++
T Consensus 221 IG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 221 IG-WGDSVKICSIK 233 (846)
T ss_pred Ee-cCCeEEEEEEe
Confidence 44 44568888887
No 315
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.45 E-value=1.6e-05 Score=71.94 Aligned_cols=289 Identities=12% Similarity=0.073 Sum_probs=156.1
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK 81 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~ 81 (351)
+.-.|.|.+||... + ..+..++.|.++|..++|-+... .....|+.-....+|.+|+..+++......-.+
T Consensus 85 aD~~GrIil~d~~~-~--s~~~~l~~~~~~~qdl~W~~~rd----~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~-- 155 (1062)
T KOG1912|consen 85 ADISGRIILVDFVL-A--SVINWLSHSNDSVQDLCWVPARD----DSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH-- 155 (1062)
T ss_pred ccccCcEEEEEehh-h--hhhhhhcCCCcchhheeeeeccC----cchheeEEecCCcEEEEEEccCCceeeccccCC--
Confidence 55679999999988 5 44567888999999999982211 222566666667899999999998776554322
Q ss_pred cee-eeEeee----------cCCeEEecC------CceeEEEEEecccccc----------------c-------e--EE
Q 048511 82 EVI-SLASYI----------EGPVLVAGS------SSYQVSVESLLIGHED----------------W-------V--YS 119 (351)
Q Consensus 82 ~~~-~~~~~~----------~~~~l~~~~------~~~~~~~~~~~~~h~~----------------~-------v--~~ 119 (351)
.+. ++.+.| .+.++.+.. .+...+..+.-..|.+ . . ..
T Consensus 156 ~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~ 235 (1062)
T KOG1912|consen 156 EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQ 235 (1062)
T ss_pred cceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHh
Confidence 222 233333 222222210 1111122221112211 0 0 12
Q ss_pred EEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCC--CEEEEEeeCC
Q 048511 120 VQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG--RSILAHGYGG 197 (351)
Q Consensus 120 l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~l~~~~~dg 197 (351)
++|+| .-.+ ++-......+.++|++. ..++..+.+ ..+.+.-+.+-|++ ..|++...||
T Consensus 236 faf~p-----~~rn-------~lfi~~prellv~dle~--~~~l~vvpi-----er~~akfv~vlP~~~rd~LfclH~nG 296 (1062)
T KOG1912|consen 236 FAFSP-----HWRN-------ILFITFPRELLVFDLEY--ECCLAVVPI-----ERGGAKFVDVLPDPRRDALFCLHSNG 296 (1062)
T ss_pred hhcCh-----hhhc-------eEEEEeccceEEEcchh--hceeEEEEe-----ccCCcceeEeccCCCcceEEEEecCC
Confidence 44554 2222 33334566799999998 666666553 23344456666654 5899999999
Q ss_pred eEEEEEcccCcccCccccccccc-ccccE-----------EEEEeecC-CCEEEEEeCCCcEEEEcCCCcccccc-----
Q 048511 198 AFHLWRNVGVDIDNWQPQKVPSG-HFAAV-----------MDISWSRS-SDYLLSVSHDQTTRVFAPWKNVASLM----- 259 (351)
Q Consensus 198 ~i~~~d~~~~~~~~~~~~~~~~~-~~~~v-----------~~v~~sp~-~~~l~s~~~dg~i~vwd~~~~~~~~~----- 259 (351)
.+.+|-.+.......++...+.. -...+ ......|. ...++.--.+|.+.+|.+.+++....
T Consensus 297 ~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~ 376 (1062)
T KOG1912|consen 297 RLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSS 376 (1062)
T ss_pred eEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccc
Confidence 99999765421110111111110 01111 22223343 23333334577888898886553321
Q ss_pred ----------------CccceEEeccccccccceeEEEEeeeC---------C-------CcEEEEecCCCeEEEEecC-
Q 048511 260 ----------------GENSWHEVARPQVHGHDINCVTIIQGK---------G-------NHRFVSGADEKVARVFEAP- 306 (351)
Q Consensus 260 ----------------~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~-------~~~l~s~~~dg~v~vw~~~- 306 (351)
....+..+.....|....++....|.+ . -.++|.|...|+|.+.|+.
T Consensus 377 iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst 456 (1062)
T KOG1912|consen 377 IELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVST 456 (1062)
T ss_pred ccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecc
Confidence 001111122222344445554444310 1 2478899999999999987
Q ss_pred chhhhceeeccc
Q 048511 307 LSFLKTLNHATF 318 (351)
Q Consensus 307 ~~~~~~~~~~~~ 318 (351)
+...+.+.-|+.
T Consensus 457 ~~v~~~fsvht~ 468 (1062)
T KOG1912|consen 457 NAVAASFSVHTS 468 (1062)
T ss_pred hhhhhhhccccc
Confidence 666667766654
No 316
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.41 E-value=0.00051 Score=57.53 Aligned_cols=275 Identities=15% Similarity=0.136 Sum_probs=145.5
Q ss_pred ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEee----------CCCcEEEEecCCCccccee
Q 048511 6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSS----------QDKVIRIWKLALRGSSANT 75 (351)
Q Consensus 6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~----------~dg~i~iwd~~~~~~~~~~ 75 (351)
++++|+|.++ +++ +-.+.+ +-.-.+..+ ++++.+++++ ..-.|.+||..+-....++
T Consensus 17 ~rv~viD~d~-~k~--lGmi~~--g~~~~~~~s--------pdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI 83 (342)
T PF06433_consen 17 SRVYVIDADS-GKL--LGMIDT--GFLGNVALS--------PDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEI 83 (342)
T ss_dssp EEEEEEETTT-TEE--EEEEEE--ESSEEEEE---------TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEE
T ss_pred ceEEEEECCC-CcE--EEEeec--ccCCceeEC--------CCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceE
Confidence 5789999888 643 334432 223346678 7888888764 2346999999988776655
Q ss_pred ecccc------cceeeeEeeecCCeEEecC--CceeEEEEEecccc----ccceEEEEecCCCCCCCCCcccCCCceeEE
Q 048511 76 QSTYR------KEVISLASYIEGPVLVAGS--SSYQVSVESLLIGH----EDWVYSVQWEPPSTAPSDGVSCQQPSSILS 143 (351)
Q Consensus 76 ~~~~~------~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~h----~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s 143 (351)
..+.. .....+..+.+++++.+.. ...++.++..-... -..--|....|. ...- |.+
T Consensus 84 ~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~-----~~~~------F~~ 152 (342)
T PF06433_consen 84 EIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPS-----GNRG------FSM 152 (342)
T ss_dssp EETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEE-----ETTE------EEE
T ss_pred ecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEec-----CCCc------eEE
Confidence 54432 1223456778888877743 33344444321110 000013334431 1123 788
Q ss_pred eecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc----
Q 048511 144 ASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS---- 219 (351)
Q Consensus 144 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~---- 219 (351)
-+.||.+.-..+... |+...+............+..-++...+..++--+.+|.|+-.|+.........+...+.
T Consensus 153 lC~DGsl~~v~Ld~~-Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~ 231 (342)
T PF06433_consen 153 LCGDGSLLTVTLDAD-GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEK 231 (342)
T ss_dssp EETTSCEEEEEETST-SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHH
T ss_pred EecCCceEEEEECCC-CCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCcccc
Confidence 889999999888853 333322211111112212223445555555655788999999888765432111111111
Q ss_pred ---cccccEEEEEeecCCCEEEEEeC--------CC--cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeC
Q 048511 220 ---GHFAAVMDISWSRSSDYLLSVSH--------DQ--TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGK 286 (351)
Q Consensus 220 ---~~~~~v~~v~~sp~~~~l~s~~~--------dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 286 (351)
--.+.-.-+++++..+.|++--. |+ .|.++|+.+++ .+.++.. ..++.+++++. +
T Consensus 232 ~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k----------rv~Ri~l-~~~~~Si~Vsq-d 299 (342)
T PF06433_consen 232 ADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK----------RVARIPL-EHPIDSIAVSQ-D 299 (342)
T ss_dssp HTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE----------EEEEEEE-EEEESEEEEES-S
T ss_pred ccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe----------EEEEEeC-CCccceEEEcc-C
Confidence 01222334677765555443221 11 47777887776 4554432 24588999998 2
Q ss_pred CCcEEE-EecCCCeEEEEecC-chhhhceeecc
Q 048511 287 GNHRFV-SGADEKVARVFEAP-LSFLKTLNHAT 317 (351)
Q Consensus 287 ~~~~l~-s~~~dg~v~vw~~~-~~~~~~~~~~~ 317 (351)
+.-+|. ....++.+.+||.. |+.++++.+..
T Consensus 300 ~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 300 DKPLLYALSAGDGTLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp SS-EEEEEETTTTEEEEEETTT--EEEEE---S
T ss_pred CCcEEEEEcCCCCeEEEEeCcCCcEEeehhccC
Confidence 333554 45578999999976 88887776554
No 317
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.38 E-value=1.4e-05 Score=73.54 Aligned_cols=147 Identities=10% Similarity=0.085 Sum_probs=104.7
Q ss_pred CCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee---------CCeEE
Q 048511 130 SDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY---------GGAFH 200 (351)
Q Consensus 130 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---------dg~i~ 200 (351)
.+++. +.+|...|+|.+-|.++ .+.++++. .|.+.|..+. -.|+.|++++. |..|+
T Consensus 185 ~Nnr~------lf~G~t~G~V~LrD~~s--~~~iht~~-----aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D~Fvk 249 (1118)
T KOG1275|consen 185 YNNRN------LFCGDTRGTVFLRDPNS--FETIHTFD-----AHSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVK 249 (1118)
T ss_pred ecCcE------EEeecccceEEeecCCc--Cceeeeee-----ccccceeeee--ccCCeEEEeecccccccccccchhh
Confidence 34667 99999999999999999 77777777 8888876655 47889999886 45589
Q ss_pred EEEcccCcccCcccccccccccccEEEEEeecC-CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeE
Q 048511 201 LWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS-SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINC 279 (351)
Q Consensus 201 ~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (351)
|||++.-+ .+..+.-+.++ .-+.|.|. ...+++++..|...+-|..+-.... ..+......+..+..
T Consensus 250 VYDLRmmr-----al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~------~~~~~v~p~~s~i~~ 317 (1118)
T KOG1275|consen 250 VYDLRMMR-----ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP------AGVKMVNPNGSGISA 317 (1118)
T ss_pred hhhhhhhh-----ccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCc------cceeEEccCCCccee
Confidence 99998853 23333333332 44677874 3457788889999999944332110 011122223344899
Q ss_pred EEEeeeCCCcEEEEecCCCeEEEEec
Q 048511 280 VTIIQGKGNHRFVSGADEKVARVFEA 305 (351)
Q Consensus 280 ~~~~~~~~~~~l~s~~~dg~v~vw~~ 305 (351)
+++++ +++.++.|..+|.|.+|.-
T Consensus 318 fDiSs--n~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 318 FDISS--NGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred EEecC--CCceEEEecccCcEeeecC
Confidence 99999 9999999999999999983
No 318
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.36 E-value=1.3e-05 Score=71.65 Aligned_cols=210 Identities=10% Similarity=0.019 Sum_probs=124.3
Q ss_pred CCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCC
Q 048511 47 AISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPS 126 (351)
Q Consensus 47 ~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 126 (351)
..+++++.|+.-|.+.+++-..+....... .+-...+..+..+
T Consensus 43 st~~~l~~GsS~G~lyl~~R~~~~~~~~~~----------------------------------~~~~~~~~~~~vs--- 85 (726)
T KOG3621|consen 43 ATEEYLAMGSSAGSVYLYNRHTGEMRKLKN----------------------------------EGATGITCVRSVS--- 85 (726)
T ss_pred cCCceEEEecccceEEEEecCchhhhcccc----------------------------------cCccceEEEEEec---
Confidence 568899999999999999987665432111 2223445556667
Q ss_pred CCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEccc
Q 048511 127 TAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVG 206 (351)
Q Consensus 127 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~ 206 (351)
++..+ +|.|+..|.|.++.+........ .+.......|...|++++|++++..+++|...|.|.+-.+..
T Consensus 86 ---~~e~l------vAagt~~g~V~v~ql~~~~p~~~-~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 86 ---SVEYL------VAAGTASGRVSVFQLNKELPRDL-DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ---chhHh------hhhhcCCceEEeehhhccCCCcc-eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 56677 89999999999999887222111 121112234678899999999999999999999999988877
Q ss_pred CcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeC
Q 048511 207 VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGK 286 (351)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 286 (351)
. .......+.+..-.+.|..+.... +.+|++.... -.+++++... +..+.+..-.+-.-...+|-|..
T Consensus 156 ~-~~~~~~~q~il~~ds~IVQlD~~q-~~LLVStl~r--~~Lc~tE~et--------i~QIG~k~R~~~~~~GACF~~g~ 223 (726)
T KOG3621|consen 156 R-QAFLSKSQEILSEDSEIVQLDYLQ-SYLLVSTLTR--CILCQTEAET--------ITQIGKKPRKSLIDFGACFFPGQ 223 (726)
T ss_pred h-hhhccccceeeccCcceEEeeccc-ceehHhhhhh--hheeecchhH--------HHHhcCCCcCCccccceEEeecc
Confidence 2 111123344444567787777653 3344443322 2355554443 11222211111112344565511
Q ss_pred C--CcEEEEecCCCeEEEEecC--chhhhceeec
Q 048511 287 G--NHRFVSGADEKVARVFEAP--LSFLKTLNHA 316 (351)
Q Consensus 287 ~--~~~l~s~~~dg~v~vw~~~--~~~~~~~~~~ 316 (351)
. ..-.+.++.-|. |+|.++ |..+++.+--
T Consensus 224 ~~~q~~~IycaRPG~-RlWead~~G~V~~Thqfk 256 (726)
T KOG3621|consen 224 CKAQKPQIYCARPGL-RLWEADFAGEVIKTHQFK 256 (726)
T ss_pred ccCCCceEEEecCCC-ceEEeecceeEEEeeehh
Confidence 0 233344444433 778755 8877776533
No 319
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.33 E-value=5.2e-07 Score=82.30 Aligned_cols=162 Identities=15% Similarity=0.092 Sum_probs=114.0
Q ss_pred eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEec
Q 048511 19 FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAG 98 (351)
Q Consensus 19 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 98 (351)
+....++..|+...+|++|+ .+.+.|+.|+..|.|+++++.++....
T Consensus 1091 Fr~w~~frd~~~~fTc~afs--------~~~~hL~vG~~~Geik~~nv~sG~~e~------------------------- 1137 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFS--------GGTNHLAVGSHAGEIKIFNVSSGSMEE------------------------- 1137 (1516)
T ss_pred cccchhhhccccceeeEEee--------cCCceEEeeeccceEEEEEccCccccc-------------------------
Confidence 44556788899999999999 888999999999999999999886542
Q ss_pred CCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec-CC-eEEEEeccCCCcceEEEEEecccccccc
Q 048511 99 SSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM-DK-TMMIWQPEKTTGIWMNVVTVGELSHSAL 176 (351)
Q Consensus 99 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~-d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 176 (351)
...+|..+|+-+.=+ .+|.. .++.+. .. ...+|++... +...+.+.
T Consensus 1138 ----------s~ncH~SavT~vePs------~dgs~------~Ltsss~S~PlsaLW~~~s~-~~~~Hsf~--------- 1185 (1516)
T KOG1832|consen 1138 ----------SVNCHQSAVTLVEPS------VDGST------QLTSSSSSSPLSALWDASST-GGPRHSFD--------- 1185 (1516)
T ss_pred ----------ccccccccccccccc------CCcce------eeeeccccCchHHHhccccc-cCcccccc---------
Confidence 245799999999877 77776 555443 33 4779998762 33333332
Q ss_pred ceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccc-ccc---ccccEEEEEeecCCCEEEEEeCCCcEEEEcCC
Q 048511 177 GFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKV-PSG---HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPW 252 (351)
Q Consensus 177 ~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~---~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~ 252 (351)
.-.++.|+..-..-+.|+......+||+.++. ++.+ +.+ ....=+.+.|+|+..+++ .|| .+||++
T Consensus 1186 ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~-----~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR 1255 (1516)
T KOG1832|consen 1186 EDKAVKFSNSLQFRALGTEADDALLYDVQTCS-----PLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVR 1255 (1516)
T ss_pred ccceeehhhhHHHHHhcccccceEEEecccCc-----HHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeec
Confidence 23567787765555556666778999999974 3333 221 222236678999987766 355 489998
Q ss_pred Ccc
Q 048511 253 KNV 255 (351)
Q Consensus 253 ~~~ 255 (351)
..+
T Consensus 1256 ~~~ 1258 (1516)
T KOG1832|consen 1256 IPE 1258 (1516)
T ss_pred cHH
Confidence 775
No 320
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.33 E-value=0.00045 Score=61.21 Aligned_cols=226 Identities=12% Similarity=0.090 Sum_probs=117.5
Q ss_pred ccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEe------
Q 048511 49 SILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQW------ 122 (351)
Q Consensus 49 ~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~------ 122 (351)
+..++.++.++.+..+|..+++......... ...+-..- .+..++++..++.+..+....|. .++....
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~--~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~--~~W~~~~~~~~~~ 194 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG--EALSRPVV-SDGLVLVHTSNGMLQALNESDGA--VKWTVNLDVPSLT 194 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCC--ceecCCEE-ECCEEEEECCCCEEEEEEccCCC--EeeeecCCCCccc
Confidence 5567778889999999999998876554322 11111011 12333334444443333322211 1111111
Q ss_pred -----cCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccc-cc-cceEEEEEcC--CCCEEEEE
Q 048511 123 -----EPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSH-SA-LGFYGGHWSP--DGRSILAH 193 (351)
Q Consensus 123 -----~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~-~~i~~i~~~~--~~~~l~~~ 193 (351)
+|. ..+.. ++.++.++.+..+|..+ ++.+-......... .. .....+.-+| .+..++++
T Consensus 195 ~~~~~sP~----v~~~~------v~~~~~~g~v~a~d~~~--G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~ 262 (394)
T PRK11138 195 LRGESAPA----TAFGG------AIVGGDNGRVSAVLMEQ--GQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYAL 262 (394)
T ss_pred ccCCCCCE----EECCE------EEEEcCCCEEEEEEccC--ChhhheeccccCCCccchhcccccCCCcEEECCEEEEE
Confidence 110 01122 66677889999999988 44333222111100 00 0011111122 34567778
Q ss_pred eeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccccc
Q 048511 194 GYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVH 273 (351)
Q Consensus 194 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 273 (351)
+.+|.+..+|..+++.. |+ ..+. ....+. ..+..++.++.++.+..+|..+++ ..|+.-. . .
T Consensus 263 ~~~g~l~ald~~tG~~~-W~--~~~~----~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~------~~W~~~~-~--~ 324 (394)
T PRK11138 263 AYNGNLVALDLRSGQIV-WK--REYG----SVNDFA--VDGGRIYLVDQNDRVYALDTRGGV------ELWSQSD-L--L 324 (394)
T ss_pred EcCCeEEEEECCCCCEE-Ee--ecCC----CccCcE--EECCEEEEEcCCCeEEEEECCCCc------EEEcccc-c--C
Confidence 88999999999887531 11 1111 111122 245567778889999999998886 2443211 1 1
Q ss_pred ccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhce
Q 048511 274 GHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTL 313 (351)
Q Consensus 274 ~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~ 313 (351)
........+. +.+|+.++.||.+++.|.. |+.+...
T Consensus 325 ~~~~~sp~v~----~g~l~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 325 HRLLTAPVLY----NGYLVVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred CCcccCCEEE----CCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 1112222222 4567788999999999976 6655544
No 321
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=0.00016 Score=60.61 Aligned_cols=231 Identities=9% Similarity=0.022 Sum_probs=124.7
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc-eeecccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA-NTQSTYR 80 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~-~~~~~~~ 80 (351)
++.+.+|.|.|+++ . ..+..+..| ..+++++|. . .+..+++.|-..|.|.|||++..+... ....
T Consensus 212 asl~nkiki~dlet-~--~~vssy~a~-~~~wSC~wD----l---de~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a--- 277 (463)
T KOG1645|consen 212 ASLGNKIKIMDLET-S--CVVSSYIAY-NQIWSCCWD----L---DERHVIYAGLQNGMVLVYDMRQPEGPLMELVA--- 277 (463)
T ss_pred eccCceEEEEeccc-c--eeeeheecc-CCceeeeec----c---CCcceeEEeccCceEEEEEccCCCchHhhhhh---
Confidence 57789999999998 4 456677777 899999999 3 345688888899999999998654321 1110
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG 160 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 160 (351)
.--..+|..++..+.+...+.+.+ |+..+.+ +..|++.-..+
T Consensus 278 ------------------------------~~t~~pv~~i~~~~~n~~f~~ggl------Lv~~lt~--l~f~ei~~s~~ 319 (463)
T KOG1645|consen 278 ------------------------------NVTINPVHKIAPVQPNKIFTSGGL------LVFALTV--LQFYEIVFSAE 319 (463)
T ss_pred ------------------------------hhccCcceeecccCccccccccce------EEeeehh--hhhhhhhcccc
Confidence 011234555554432221133333 4444443 56777665333
Q ss_pred ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-----------------CeEEEEEcccCcccCcccccccccccc
Q 048511 161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-----------------GAFHLWRNVGVDIDNWQPQKVPSGHFA 223 (351)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----------------g~i~~~d~~~~~~~~~~~~~~~~~~~~ 223 (351)
.+.....+ ...+...++..++..+.++..... -.-.||..+..-. -.+.-+-+..
T Consensus 320 ~~p~vlel----e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~----Gs~~~kl~t~ 391 (463)
T KOG1645|consen 320 CLPCVLEL----EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYF----GSKQTKLSTT 391 (463)
T ss_pred CCCccccc----CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeeccccc----CCcccccccc
Confidence 33333332 234445566666655544443322 0012222111100 0000000111
Q ss_pred cEEEEEeecCCCEEE-EEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEE
Q 048511 224 AVMDISWSRSSDYLL-SVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARV 302 (351)
Q Consensus 224 ~v~~v~~sp~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~v 302 (351)
. .+--.++..+++ ++...+.+.+||..+.+ .+.++. -..+|.++.......+.+|+.- .|..++|
T Consensus 392 ~--ai~~~~~nn~iv~~gd~tn~lil~D~~s~e----------vvQ~l~-~~epv~Dicp~~~n~~syLa~L-Td~~v~I 457 (463)
T KOG1645|consen 392 Q--AIRAVEDNNYIVVVGDSTNELILQDPHSFE----------VVQTLA-LSEPVLDICPNDTNGSSYLALL-TDDRVHI 457 (463)
T ss_pred c--ceeccccccEEEEecCCcceeEEeccchhh----------eeeecc-cCcceeecceeecCCcchhhhe-ecceEEE
Confidence 1 111233445554 45556889999998876 344442 2356878777664455566655 4557788
Q ss_pred EecC
Q 048511 303 FEAP 306 (351)
Q Consensus 303 w~~~ 306 (351)
|..+
T Consensus 458 yk~e 461 (463)
T KOG1645|consen 458 YKNE 461 (463)
T ss_pred EecC
Confidence 8654
No 322
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.30 E-value=0.0004 Score=61.61 Aligned_cols=250 Identities=11% Similarity=0.053 Sum_probs=120.7
Q ss_pred ceEEEEEccCC-----Cce--EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc
Q 048511 6 NKIHLYRGQRT-----GKF--VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST 78 (351)
Q Consensus 6 g~i~vw~~~~~-----~~~--~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~ 78 (351)
..|+..|+... ++. .....+....-....|.++ |++++++.++ ||...|+....... .
T Consensus 2 ~~i~~~~~~~~~~~~dg~~~~l~~k~lg~~~~~p~~ls~n--------pngr~v~V~g-~geY~iyt~~~~r~------k 66 (443)
T PF04053_consen 2 NEIRTANLKNISEIKDGERLPLSVKELGSCEIYPQSLSHN--------PNGRFVLVCG-DGEYEIYTALAWRN------K 66 (443)
T ss_dssp TEEEEEE--S-----TTS-B----EEEEE-SS--SEEEE---------TTSSEEEEEE-TTEEEEEETTTTEE------E
T ss_pred CceEEEECcCCCccCCCceeeEEeccCCCCCcCCeeEEEC--------CCCCEEEEEc-CCEEEEEEccCCcc------c
Confidence 35677776652 221 1223344444567899999 8899888855 77777777332211 1
Q ss_pred cccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCC
Q 048511 79 YRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKT 158 (351)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 158 (351)
.......++|...+. +++-.....+.+.+.+......-..+.++.... -.|.+ |...+ ++.|.+||+.+
T Consensus 67 ~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~I--f~G~L------L~~~~-~~~i~~yDw~~- 135 (443)
T PF04053_consen 67 AFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKI--FGGNL------LGVKS-SDFICFYDWET- 135 (443)
T ss_dssp EEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-----SS-EEEE--E-SSS------EEEEE-TTEEEEE-TTT-
T ss_pred ccCceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEcCCcccceE--EcCcE------EEEEC-CCCEEEEEhhH-
Confidence 134667788888444 555555666777665554431111111110000 01444 55554 44899999999
Q ss_pred CcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccC------cccCcccccccccccccEEEEEeec
Q 048511 159 TGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGV------DIDNWQPQKVPSGHFAAVMDISWSR 232 (351)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~------~~~~~~~~~~~~~~~~~v~~v~~sp 232 (351)
+..+..+.. ..|..+.|++++.+++..+.+ .+.+++.+.. +......+..+..-...|.+.+|..
T Consensus 136 -~~~i~~i~v-------~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~ 206 (443)
T PF04053_consen 136 -GKLIRRIDV-------SAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVE 206 (443)
T ss_dssp ---EEEEESS--------E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEET
T ss_pred -cceeeEEec-------CCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEc
Confidence 777776651 238899999999999988765 5666665432 0000001222222245788888986
Q ss_pred CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCch
Q 048511 233 SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLS 308 (351)
Q Consensus 233 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 308 (351)
+ -++.| +.. .++. +.++.. ..+.. -..++.=+.+.+ ..+.+.....|+.|..+.++..
T Consensus 207 d-~fiYt-T~~-~lkY--l~~Ge~--------~~i~~---ld~~~yllgy~~--~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 207 D-CFIYT-TSN-HLKY--LVNGET--------GIIAH---LDKPLYLLGYLP--KENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp T-EEEEE--TT-EEEE--EETTEE--------EEEEE----SS--EEEEEET--TTTEEEEE-TT--EEEEE--HH
T ss_pred C-EEEEE-cCC-eEEE--EEcCCc--------ceEEE---cCCceEEEEEEc--cCCEEEEEECCCCEEEEEECHH
Confidence 6 33333 333 6655 444431 12222 234566677776 6678888889999999988743
No 323
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=0.00021 Score=62.42 Aligned_cols=228 Identities=15% Similarity=0.140 Sum_probs=137.6
Q ss_pred eEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC-----------Cc
Q 048511 33 RSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS-----------SS 101 (351)
Q Consensus 33 ~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~~ 101 (351)
+-+.|+ |-|.||+|--.-| |.+|--.+...++... ...+.-+.|+|..++|++-+ ..
T Consensus 214 tyv~wS--------P~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~---Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~ 281 (698)
T KOG2314|consen 214 TYVRWS--------PKGTYLVTFHKQG-IALWGGESFDRIQRFY---HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEG 281 (698)
T ss_pred eeEEec--------CCceEEEEEeccc-eeeecCccHHHHHhcc---CCCceeeecCCccceEEEecCCccccCcccCCC
Confidence 568899 8899999998766 8899766555544443 34677888999999998832 22
Q ss_pred eeEEEEEeccccccce-----------EEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecc
Q 048511 102 YQVSVESLLIGHEDWV-----------YSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGE 170 (351)
Q Consensus 102 ~~~~~~~~~~~h~~~v-----------~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 170 (351)
..+.+|....|+...- .-+.|+ .|+++ +|--.. ..|.||+... -..+..-.
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS------~DdKy------~Arm~~-~sisIyEtps--f~lld~Ks--- 343 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWS------HDDKY------FARMTG-NSISIYETPS--FMLLDKKS--- 343 (698)
T ss_pred ceEEEEEccccchhcceeccCCCccccceEEec------cCCce------eEEecc-ceEEEEecCc--eeeecccc---
Confidence 4556677666653321 235788 78888 776665 4588888765 11111100
Q ss_pred ccccccceEEEEEcCCCCEEE-----------------------------------------------EEe---------
Q 048511 171 LSHSALGFYGGHWSPDGRSIL-----------------------------------------------AHG--------- 194 (351)
Q Consensus 171 ~~~~~~~i~~i~~~~~~~~l~-----------------------------------------------~~~--------- 194 (351)
-.-..|....|+|.++.|| .--
T Consensus 344 --lki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~ 421 (698)
T KOG2314|consen 344 --LKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVK 421 (698)
T ss_pred --cCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeecccccc
Confidence 1122344444444444333 210
Q ss_pred -eCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC---CCcEEEEcCCCccccccCccceEEeccc
Q 048511 195 -YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH---DQTTRVFAPWKNVASLMGENSWHEVARP 270 (351)
Q Consensus 195 -~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 270 (351)
.-..+-|+.++... .++..+. -...|...+|-|.|..+++-+. ..++.+|.+++.. ..+..+..+
T Consensus 422 g~f~n~eIfrireKd----Ipve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~------~~~~lVk~~ 490 (698)
T KOG2314|consen 422 GQFSNLEIFRIREKD----IPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI------KKPSLVKEL 490 (698)
T ss_pred ceEeeEEEEEeeccC----CCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCC------Cchhhhhhh
Confidence 01112333333322 1122221 2456778899999988776543 3678999887432 234444444
Q ss_pred cccccceeEEEEeeeCCCcEEEEec---CCCeEEEEecCc
Q 048511 271 QVHGHDINCVTIIQGKGNHRFVSGA---DEKVARVFEAPL 307 (351)
Q Consensus 271 ~~~~~~i~~~~~~~~~~~~~l~s~~---~dg~v~vw~~~~ 307 (351)
.. ...+.+.|+| .|++++.+. ..|.+.++|..-
T Consensus 491 dk--~~~N~vfwsP--kG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 491 DK--KFANTVFWSP--KGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred cc--cccceEEEcC--CCcEEEEEEecccccceEEEecch
Confidence 32 3478899999 898888665 578899999873
No 324
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.26 E-value=0.0004 Score=61.64 Aligned_cols=157 Identities=12% Similarity=0.058 Sum_probs=93.0
Q ss_pred ceEEEEecCCCCCCCCCc-ccCCCceeEEeec---CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEE
Q 048511 116 WVYSVQWEPPSTAPSDGV-SCQQPSSILSASM---DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSIL 191 (351)
Q Consensus 116 ~v~~l~~~p~~~~~~~~~-~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 191 (351)
......|+ ||++ . ++..+. +..|.++|+.+ ++..... ..........|+|||+.++
T Consensus 189 ~~~~p~wS------pDG~~~------i~y~s~~~~~~~Iyv~dl~t--g~~~~lt------~~~g~~~~~~~SPDG~~la 248 (419)
T PRK04043 189 LNIFPKWA------NKEQTA------FYYTSYGERKPTLYKYNLYT--GKKEKIA------SSQGMLVVSDVSKDGSKLL 248 (419)
T ss_pred CeEeEEEC------CCCCcE------EEEEEccCCCCEEEEEECCC--CcEEEEe------cCCCcEEeeEECCCCCEEE
Confidence 67789999 6776 3 443333 35688999887 4332221 1233455678999998776
Q ss_pred EEe-e--CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-CC--cEEEEcCCCccccccCccceE
Q 048511 192 AHG-Y--GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-DQ--TTRVFAPWKNVASLMGENSWH 265 (351)
Q Consensus 192 ~~~-~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~ 265 (351)
... . +..|.++|+.++. ...+..+........|+|||+.|+..+. .+ .|++.|+..+.. +
T Consensus 249 ~~~~~~g~~~Iy~~dl~~g~------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--------~ 314 (419)
T PRK04043 249 LTMAPKGQPDIYLYDTNTKT------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--------E 314 (419)
T ss_pred EEEccCCCcEEEEEECCCCc------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--------E
Confidence 443 2 3568888887763 2223323322334579999988766553 23 677778876651 1
Q ss_pred EeccccccccceeEEEEeeeCCCcEEEEecCC---------CeEEEEecCchhhhce
Q 048511 266 EVARPQVHGHDINCVTIIQGKGNHRFVSGADE---------KVARVFEAPLSFLKTL 313 (351)
Q Consensus 266 ~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---------g~v~vw~~~~~~~~~~ 313 (351)
.+. . .+. ....|+| +|+.|+..+.. ..|.+.|+.+...+.|
T Consensus 315 rlt-~--~g~--~~~~~SP--DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~L 364 (419)
T PRK04043 315 QVV-F--HGK--NNSSVST--YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRL 364 (419)
T ss_pred eCc-c--CCC--cCceECC--CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEEC
Confidence 111 1 111 1248999 88888766543 3677778774444444
No 325
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.20 E-value=0.00012 Score=64.65 Aligned_cols=91 Identities=15% Similarity=0.123 Sum_probs=69.1
Q ss_pred EEEEccCCCceEEEEeee-ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeE
Q 048511 9 HLYRGQRTGKFVRACELK-GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLA 87 (351)
Q Consensus 9 ~vw~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 87 (351)
.+|+... ++++.+.... .....|.|++++ ++.+.|+.|+.||+|.+||...+....
T Consensus 239 ciYE~~r-~klqrvsvtsipL~s~v~~ca~s--------p~E~kLvlGC~DgSiiLyD~~~~~t~~-------------- 295 (545)
T PF11768_consen 239 CIYECSR-NKLQRVSVTSIPLPSQVICCARS--------PSEDKLVLGCEDGSIILYDTTRGVTLL-------------- 295 (545)
T ss_pred EEEEeec-CceeEEEEEEEecCCcceEEecC--------cccceEEEEecCCeEEEEEcCCCeeee--------------
Confidence 4566666 5555544332 567889999999 889999999999999999987652211
Q ss_pred eeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC
Q 048511 88 SYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK 157 (351)
Q Consensus 88 ~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 157 (351)
....-..+.++|+ |+|.+ +++|+.-|.+.+||+.-
T Consensus 296 -----------------------~ka~~~P~~iaWH------p~gai------~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 296 -----------------------AKAEFIPTLIAWH------PDGAI------FVVGSEQGELQCFDMAL 330 (545)
T ss_pred -----------------------eeecccceEEEEc------CCCcE------EEEEcCCceEEEEEeec
Confidence 1123347789999 78888 99999999999999875
No 326
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.15 E-value=0.00022 Score=57.86 Aligned_cols=211 Identities=9% Similarity=0.095 Sum_probs=114.2
Q ss_pred EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCC
Q 048511 108 SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG 187 (351)
Q Consensus 108 ~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 187 (351)
..+.+-...+..++|.| ..+.+ +++....+.|..++.+ +..+..+.+.. ....-.|++..++
T Consensus 15 ~~l~g~~~e~SGLTy~p-----d~~tL------faV~d~~~~i~els~~---G~vlr~i~l~g----~~D~EgI~y~g~~ 76 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNP-----DTGTL------FAVQDEPGEIYELSLD---GKVLRRIPLDG----FGDYEGITYLGNG 76 (248)
T ss_dssp EE-TT--S-EEEEEEET-----TTTEE------EEEETTTTEEEEEETT-----EEEEEE-SS-----SSEEEEEE-STT
T ss_pred eECCCccCCccccEEcC-----CCCeE------EEEECCCCEEEEEcCC---CCEEEEEeCCC----CCCceeEEEECCC
Confidence 34566666799999995 34556 7888888888777753 67777776432 3457788998888
Q ss_pred CEEEEEeeCCeEEEEEcccCcccC-ccccc--c--c-ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCC--cccccc
Q 048511 188 RSILAHGYGGAFHLWRNVGVDIDN-WQPQK--V--P-SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWK--NVASLM 259 (351)
Q Consensus 188 ~~l~~~~~dg~i~~~d~~~~~~~~-~~~~~--~--~-~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~--~~~~~~ 259 (351)
.++++.-.++.+.++++....... ..... . + ..+...+-.++|.|.++.|+.+-+..-..||.+.. ......
T Consensus 77 ~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~ 156 (248)
T PF06977_consen 77 RYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLF 156 (248)
T ss_dssp EEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--E
T ss_pred EEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcccee
Confidence 877777678999999984321100 00001 1 1 12445689999999888888787777777777654 110000
Q ss_pred CccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhceeeccccccchhhhhHHhHHhhcceee
Q 048511 260 GENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLNHATFQESSFHEDLQADVQILGANMS 339 (351)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (351)
......+.........+..++++| ..+++++-...+..|.++|..|+.+..+.=..+...-.. . -..|+ |.++-
T Consensus 157 -~~~~~~~~~~~~~~~d~S~l~~~p-~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~-~--~~QpE-GIa~d 230 (248)
T PF06977_consen 157 -VSDDQDLDDDKLFVRDLSGLSYDP-RTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSK-D--IPQPE-GIAFD 230 (248)
T ss_dssp -EEE-HHHH-HT--SS---EEEEET-TTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS------SEE-EEEE-
T ss_pred -eccccccccccceeccccceEEcC-CCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCccc-c--cCCcc-EEEEC
Confidence 000000111122344589999998 567888888999999999988887765543332211000 0 13477 77776
Q ss_pred ecc
Q 048511 340 ALG 342 (351)
Q Consensus 340 ~~~ 342 (351)
+-|
T Consensus 231 ~~G 233 (248)
T PF06977_consen 231 PDG 233 (248)
T ss_dssp TT-
T ss_pred CCC
Confidence 644
No 327
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.12 E-value=3.1e-06 Score=77.47 Aligned_cols=173 Identities=9% Similarity=0.059 Sum_probs=121.2
Q ss_pred EEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEc
Q 048511 105 SVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWS 184 (351)
Q Consensus 105 ~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 184 (351)
+.|+.+..|+...+|++|+ .+.++ |+.|+..|.|+++++.+ |....... .|...|+-+.-+
T Consensus 1092 r~w~~frd~~~~fTc~afs------~~~~h------L~vG~~~Geik~~nv~s--G~~e~s~n-----cH~SavT~vePs 1152 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFS------GGTNH------LAVGSHAGEIKIFNVSS--GSMEESVN-----CHQSAVTLVEPS 1152 (1516)
T ss_pred ccchhhhccccceeeEEee------cCCce------EEeeeccceEEEEEccC--cccccccc-----cccccccccccc
Confidence 5577788899999999999 77788 99999999999999998 65444443 899999999988
Q ss_pred CCCCEEEEEeeCC--eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCcc
Q 048511 185 PDGRSILAHGYGG--AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGEN 262 (351)
Q Consensus 185 ~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 262 (351)
.+|..+++.+.-. ...+|++... +.+.+++.+ -.++.|+.....-+.|+......|||+++.....
T Consensus 1153 ~dgs~~Ltsss~S~PlsaLW~~~s~----~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~---- 1220 (1516)
T KOG1832|consen 1153 VDGSTQLTSSSSSSPLSALWDASST----GGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQ---- 1220 (1516)
T ss_pred CCcceeeeeccccCchHHHhccccc----cCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHH----
Confidence 8998777665443 4779998663 245555543 3567888765544555555678999999886211
Q ss_pred ceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511 263 SWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT 317 (351)
Q Consensus 263 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~ 317 (351)
..+....+..+.-++..|+| +..+++ .||. +||+. .+.+..|..++
T Consensus 1221 --tylt~~~~~~y~~n~a~FsP--~D~LIl---ndGv--LWDvR~~~aIh~FD~ft 1267 (1516)
T KOG1832|consen 1221 --TYLTDTVTSSYSNNLAHFSP--CDTLIL---NDGV--LWDVRIPEAIHRFDQFT 1267 (1516)
T ss_pred --HhcCcchhhhhhccccccCC--CcceEe---eCce--eeeeccHHHHhhhhhhe
Confidence 11222223334457888999 666665 3554 59976 55666665554
No 328
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.06 E-value=0.0017 Score=53.00 Aligned_cols=185 Identities=12% Similarity=0.007 Sum_probs=102.3
Q ss_pred CCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccc
Q 048511 3 GLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKE 82 (351)
Q Consensus 3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 82 (351)
+.++.|+.||..+ |+. +..+.. .+.+..... ..+..++.++.|+.|..+|..+++.........
T Consensus 43 ~~~~~l~~~d~~t-G~~--~W~~~~-~~~~~~~~~---------~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~--- 106 (238)
T PF13360_consen 43 SGDGNLYALDAKT-GKV--LWRFDL-PGPISGAPV---------VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTS--- 106 (238)
T ss_dssp ETTSEEEEEETTT-SEE--EEEEEC-SSCGGSGEE---------EETTEEEEEETTSEEEEEETTTSCEEEEEEE-S---
T ss_pred cCCCEEEEEECCC-CCE--EEEeec-cccccceee---------ecccccccccceeeeEecccCCcceeeeecccc---
Confidence 4678888888887 743 333332 222111111 234566666678889999988887655421100
Q ss_pred eeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcce
Q 048511 83 VISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIW 162 (351)
Q Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 162 (351)
..... ........ .++.. ++.+..++.|..+|+++ |..
T Consensus 107 ---------------------------~~~~~-~~~~~~~~------~~~~~------~~~~~~~g~l~~~d~~t--G~~ 144 (238)
T PF13360_consen 107 ---------------------------SPPAG-VRSSSSPA------VDGDR------LYVGTSSGKLVALDPKT--GKL 144 (238)
T ss_dssp ---------------------------SCTCS-TB--SEEE------EETTE------EEEEETCSEEEEEETTT--TEE
T ss_pred ---------------------------ccccc-cccccCce------EecCE------EEEEeccCcEEEEecCC--CcE
Confidence 00000 11111111 12444 77777799999999998 776
Q ss_pred EEEEEecccccc-----ccceEEEEEcCCCCEEEEEeeCCe-EEEEEcccCcccCcccccccccccccEEEEEeecCCCE
Q 048511 163 MNVVTVGELSHS-----ALGFYGGHWSPDGRSILAHGYGGA-FHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDY 236 (351)
Q Consensus 163 ~~~~~~~~~~~~-----~~~i~~i~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 236 (351)
+-.......... ...+..-....++ .++.+..++. +.+ |+.+++. +-... ...+.. ....++..
T Consensus 145 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~-----~w~~~--~~~~~~-~~~~~~~~ 214 (238)
T PF13360_consen 145 LWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEK-----LWSKP--ISGIYS-LPSVDGGT 214 (238)
T ss_dssp EEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEE-----EEEEC--SS-ECE-CEECCCTE
T ss_pred EEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCE-----EEEec--CCCccC-CceeeCCE
Confidence 666654221110 0112222222344 6777777775 555 9988752 11111 122222 13456778
Q ss_pred EEEEeCCCcEEEEcCCCcc
Q 048511 237 LLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 237 l~s~~~dg~i~vwd~~~~~ 255 (351)
|+.++.++.|..||+++++
T Consensus 215 l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 215 LYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EEEEETTTEEEEEETTTTE
T ss_pred EEEEeCCCEEEEEECCCCC
Confidence 8888899999999999987
No 329
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.04 E-value=6.1e-05 Score=67.52 Aligned_cols=123 Identities=11% Similarity=0.016 Sum_probs=92.9
Q ss_pred cccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCC
Q 048511 174 SALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWK 253 (351)
Q Consensus 174 ~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~ 253 (351)
+...+.--+++..+++++.|+.-|.+++|+...+. .......+..+.+...+.+++..++|.|+..|.|.++-+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~----~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGE----MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK 107 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchh----hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc
Confidence 33445556777889999999999999999988874 23334444555677778899888899999999999999877
Q ss_pred ccccccCccceEEec-cccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511 254 NVASLMGENSWHEVA-RPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 254 ~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 307 (351)
... .....+. .-+.|...|+|++|++ ++..+.+|..-|.|.+-.++.
T Consensus 108 ~~p-----~~~~~~t~~d~~~~~rVTal~Ws~--~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 108 ELP-----RDLDYVTPCDKSHKCRVTALEWSK--NGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cCC-----CcceeeccccccCCceEEEEEecc--cccEEeecCCCceEEEEEech
Confidence 431 1111222 2234778899999999 999999999999999888775
No 330
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=5.2e-05 Score=63.46 Aligned_cols=122 Identities=14% Similarity=0.127 Sum_probs=82.3
Q ss_pred eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCC-
Q 048511 109 LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG- 187 (351)
Q Consensus 109 ~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~- 187 (351)
.+.+|...|..++|+| .+.-+ +..++.+..|+|.|+++ ...+..+. .+ ..+++++|+.+.
T Consensus 188 ~lp~~g~~IrdlafSp-----~~~GL------l~~asl~nkiki~dlet--~~~vssy~-----a~-~~~wSC~wDlde~ 248 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSP-----FNEGL------LGLASLGNKIKIMDLET--SCVVSSYI-----AY-NQIWSCCWDLDER 248 (463)
T ss_pred cccccchhhhhhccCc-----cccce------eeeeccCceEEEEeccc--ceeeehee-----cc-CCceeeeeccCCc
Confidence 4567888999999996 33336 88999999999999998 55555544 33 679999999876
Q ss_pred CEEEEEeeCCeEEEEEcccCcccCccccccccc--ccccEEEEEee------cCCCEEEEEeCCCcEEEEcCCCcc
Q 048511 188 RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG--HFAAVMDISWS------RSSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 188 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~--~~~~v~~v~~s------p~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
++++.|-..|.|.+||++..+ .++..+.+ ...+|..++.- +.+.+|+....+ +..|.+....
T Consensus 249 h~IYaGl~nG~VlvyD~R~~~----~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~ 318 (463)
T KOG1645|consen 249 HVIYAGLQNGMVLVYDMRQPE----GPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSA 318 (463)
T ss_pred ceeEEeccCceEEEEEccCCC----chHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccc
Confidence 477788889999999998765 33333333 22344444332 234445544433 5667765443
No 331
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.99 E-value=0.0035 Score=51.99 Aligned_cols=199 Identities=7% Similarity=0.027 Sum_probs=118.2
Q ss_pred CccEEEEeeCCCc-EEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCC
Q 048511 48 ISILLVSSSQDKV-IRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPS 126 (351)
Q Consensus 48 ~~~~l~t~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 126 (351)
....++.+-.-|+ ..+||..+++....+... .+ +.+.|| -.|+
T Consensus 16 ~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~------------~g---------------RHFyGH------g~fs--- 59 (305)
T PF07433_consen 16 RPEAVAFARRPGTFALVFDCRTGQLLQRLWAP------------PG---------------RHFYGH------GVFS--- 59 (305)
T ss_pred CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC------------CC---------------CEEecC------EEEc---
Confidence 4556666666554 667888887665433321 11 224566 3677
Q ss_pred CCCCCCcccCCCceeEEee-----cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee------
Q 048511 127 TAPSDGVSCQQPSSILSAS-----MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY------ 195 (351)
Q Consensus 127 ~~~~~~~~~~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~------ 195 (351)
+||++ |.+.- ..|.|-|||... ....+..+. .+...--.+.+.||++.|+++..
T Consensus 60 ---~dG~~------LytTEnd~~~g~G~IgVyd~~~-~~~ri~E~~-----s~GIGPHel~l~pDG~tLvVANGGI~Thp 124 (305)
T PF07433_consen 60 ---PDGRL------LYTTENDYETGRGVIGVYDAAR-GYRRIGEFP-----SHGIGPHELLLMPDGETLVVANGGIETHP 124 (305)
T ss_pred ---CCCCE------EEEeccccCCCcEEEEEEECcC-CcEEEeEec-----CCCcChhhEEEcCCCCEEEEEcCCCccCc
Confidence 78887 77653 358899999993 144444444 44444556789999987776532
Q ss_pred ------------CCeEEEEEcccCcccCcccccc--c--ccccccEEEEEeecCCCEEEEEeCCC-------cEEEEcCC
Q 048511 196 ------------GGAFHLWRNVGVDIDNWQPQKV--P--SGHFAAVMDISWSRSSDYLLSVSHDQ-------TTRVFAPW 252 (351)
Q Consensus 196 ------------dg~i~~~d~~~~~~~~~~~~~~--~--~~~~~~v~~v~~sp~~~~l~s~~~dg-------~i~vwd~~ 252 (351)
+-.+.+.|..+++ .+.+ + ..|.-.|.-+++.++|..++..-..| -|.+++..
T Consensus 125 d~GR~kLNl~tM~psL~~ld~~sG~-----ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g 199 (305)
T PF07433_consen 125 DSGRAKLNLDTMQPSLVYLDARSGA-----LLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG 199 (305)
T ss_pred ccCceecChhhcCCceEEEecCCCc-----eeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC
Confidence 2234455555553 2222 3 33667789999999987665544333 24444432
Q ss_pred CccccccCccceEEecc----ccccccceeEEEEeeeCCCcEEEEec-CCCeEEEEecC-chhhhce
Q 048511 253 KNVASLMGENSWHEVAR----PQVHGHDINCVTIIQGKGNHRFVSGA-DEKVARVFEAP-LSFLKTL 313 (351)
Q Consensus 253 ~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~l~s~~-~dg~v~vw~~~-~~~~~~~ 313 (351)
..- ..+.. ...-..-+-+|+++. ++.++++.+ .-+.+.+||.. +.++...
T Consensus 200 ~~~---------~~~~~p~~~~~~l~~Y~gSIa~~~--~g~~ia~tsPrGg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 200 GAL---------RLLPAPEEQWRRLNGYIGSIAADR--DGRLIAVTSPRGGRVAVWDAATGRLLGSV 255 (305)
T ss_pred Ccc---------eeccCChHHHHhhCCceEEEEEeC--CCCEEEEECCCCCEEEEEECCCCCEeecc
Confidence 211 11111 112223488999998 777775555 78899999876 6666543
No 332
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.92 E-value=0.011 Score=50.84 Aligned_cols=241 Identities=10% Similarity=0.061 Sum_probs=124.7
Q ss_pred ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC----------CCcEEEEecCCCccccee
Q 048511 6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ----------DKVIRIWKLALRGSSANT 75 (351)
Q Consensus 6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~----------dg~i~iwd~~~~~~~~~~ 75 (351)
..|++.|..+ .+......+.. ...+++++...-. .+++....+|+.|.. .|.|.++++.....
T Consensus 2 s~i~l~d~~~-~~~~~~~~l~~-~E~~~s~~~~~l~-~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~---- 74 (321)
T PF03178_consen 2 SSIRLVDPTT-FEVLDSFELEP-NEHVTSLCSVKLK-GDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE---- 74 (321)
T ss_dssp -EEEEEETTT-SSEEEEEEEET-TEEEEEEEEEEET-TS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS------
T ss_pred cEEEEEeCCC-CeEEEEEECCC-CceEEEEEEEEEc-CccccccCEEEEEecccccccccccCcEEEEEEEEcccc----
Confidence 4688999877 54344444553 3345555443000 000002567877742 27888888876400
Q ss_pred ecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEec
Q 048511 76 QSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQP 155 (351)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 155 (351)
....++..... ...++|++++-. ++. |+.+ ..+.|.+|++
T Consensus 75 ------------------------~~~~l~~i~~~-~~~g~V~ai~~~-------~~~-------lv~~-~g~~l~v~~l 114 (321)
T PF03178_consen 75 ------------------------NNFKLKLIHST-EVKGPVTAICSF-------NGR-------LVVA-VGNKLYVYDL 114 (321)
T ss_dssp ---------------------------EEEEEEEE-EESS-EEEEEEE-------TTE-------EEEE-ETTEEEEEEE
T ss_pred ------------------------cceEEEEEEEE-eecCcceEhhhh-------CCE-------EEEe-ecCEEEEEEc
Confidence 00111222221 246789999866 222 3333 3578999999
Q ss_pred cCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCC
Q 048511 156 EKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSD 235 (351)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 235 (351)
...+ .....-.. .....+.++... ++++++|.....+.++..+.... .+..+.. ......++++.|-++++
T Consensus 115 ~~~~-~l~~~~~~----~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~-~l~~va~-d~~~~~v~~~~~l~d~~ 185 (321)
T PF03178_consen 115 DNSK-TLLKKAFY----DSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENN-KLILVAR-DYQPRWVTAAEFLVDED 185 (321)
T ss_dssp ETTS-SEEEEEEE-----BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE--EEEEEE-ESS-BEEEEEEEE-SSS
T ss_pred cCcc-cchhhhee----cceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCC-EEEEEEe-cCCCccEEEEEEecCCc
Confidence 9843 12222221 222356666654 56899999888888886654210 0111211 12345688999987777
Q ss_pred EEEEEeCCCcEEEEcCCCccccccCcc-ceEEeccccccccceeEE---EEeee-CCC-----cEEEEecCCCeEEEE
Q 048511 236 YLLSVSHDQTTRVFAPWKNVASLMGEN-SWHEVARPQVHGHDINCV---TIIQG-KGN-----HRFVSGADEKVARVF 303 (351)
Q Consensus 236 ~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~---~~~~~-~~~-----~~l~s~~~dg~v~vw 303 (351)
.++.+..+|.+.++............. .+.....+ ..+..|+++ ++.|. .+. ..++.++.+|.|.+.
T Consensus 186 ~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f-~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 186 TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSF-HLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEE-E-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEEcCCCeEEEEEECCCCcccccccccceeEEEE-ECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 899999999999998864321111111 23333333 233457777 44441 011 247777788888743
No 333
>PHA02713 hypothetical protein; Provisional
Probab=97.89 E-value=0.0023 Score=59.20 Aligned_cols=143 Identities=8% Similarity=0.051 Sum_probs=77.4
Q ss_pred eEEeecCC-----eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-------------------
Q 048511 141 ILSASMDK-----TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG------------------- 196 (351)
Q Consensus 141 l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------------------- 196 (351)
.+.|+.++ .+..||..+ ..|...-. +.........+. -+++..+.|+.+
T Consensus 355 YviGG~~~~~~~~sve~Ydp~~--~~W~~~~~---mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 355 YAIGGQNGTNVERTIECYTMGD--DKWKMLPD---MPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred EEECCcCCCCCCceEEEEECCC--CeEEECCC---CCcccccccEEE--ECCEEEEEeCCCccccccccccccccccccc
Confidence 66666543 477788877 55543221 111111111222 256666666654
Q ss_pred ----CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCC------CcEEEEcCCCccccccCccceEE
Q 048511 197 ----GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD------QTTRVFAPWKNVASLMGENSWHE 266 (351)
Q Consensus 197 ----g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~ 266 (351)
..+..||..+.+ |..+..+....... +++ .-++++.+.|+.+ ..+..||..+.. .|..
T Consensus 428 ~~~~~~ve~YDP~td~---W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~-------~W~~ 495 (557)
T PHA02713 428 THSSNKVIRYDTVNNI---WETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYN-------GWEL 495 (557)
T ss_pred ccccceEEEECCCCCe---EeecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCC-------CeeE
Confidence 247778887754 34444332222111 122 2356676777654 246788887621 4777
Q ss_pred eccccccccceeEEEEeeeCCCcEEEEecCCC--eEEEEecC
Q 048511 267 VARPQVHGHDINCVTIIQGKGNHRFVSGADEK--VARVFEAP 306 (351)
Q Consensus 267 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg--~v~vw~~~ 306 (351)
+..+....... .++.. ++.+.+.||.|+ .+-.||+.
T Consensus 496 ~~~m~~~r~~~-~~~~~---~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 496 ITTTESRLSAL-HTILH---DNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred ccccCcccccc-eeEEE---CCEEEEEeeecceeehhhcCcc
Confidence 76665443323 23332 588999999888 66777766
No 334
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.89 E-value=0.00042 Score=63.79 Aligned_cols=102 Identities=15% Similarity=0.201 Sum_probs=75.8
Q ss_pred eEEEeeCCcccCCCCCccEEEEee----CCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEE
Q 048511 33 RSLDFSLPVCTSGEAISILLVSSS----QDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES 108 (351)
Q Consensus 33 ~~l~~~~~~~~~~~~~~~~l~t~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 108 (351)
+-..|+ |...+||.++ ..|.|.||- +++++...... +-...+++|+|..-+|+.|-..+.+.++.
T Consensus 19 ti~SWH--------PsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~--P~hatSLCWHpe~~vLa~gwe~g~~~v~~ 87 (1416)
T KOG3617|consen 19 TISSWH--------PSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY--PVHATSLCWHPEEFVLAQGWEMGVSDVQK 87 (1416)
T ss_pred cccccC--------CCCceeEEEEecCCCCceEEEEe-cCCCCCccccc--ceehhhhccChHHHHHhhccccceeEEEe
Confidence 445688 6677888775 457888873 44443322222 23566799999999999988877776654
Q ss_pred e--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC
Q 048511 109 L--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK 157 (351)
Q Consensus 109 ~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 157 (351)
. ...|..+|..+.|+ ++|.. ++++..-|.|.+|....
T Consensus 88 ~~~~e~htv~~th~a~i~~l~wS------~~G~~------l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 88 TNTTETHTVVETHPAPIQGLDWS------HDGTV------LMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred cCCceeeeeccCCCCCceeEEec------CCCCe------EEEcCCCceeEEEEeee
Confidence 3 45688999999999 89999 99999999999998873
No 335
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.88 E-value=0.0056 Score=58.90 Aligned_cols=199 Identities=9% Similarity=0.109 Sum_probs=120.5
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEe-------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESL-------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW 153 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 153 (351)
..+.++.|..+...++++...+.+.+... ...-...|.+++|+ +|.+. ++..+..+++.+-
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS------~Dee~------l~liT~~~tll~m 136 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWS------PDEEL------LALITGRQTLLFM 136 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeec------CCCcE------EEEEeCCcEEEEE
Confidence 46778888888887777766666644321 22235679999999 78888 8888777776654
Q ss_pred ecc----CC---------Ccc-----eEE---EEEe-------ccccc---------cccceEEEEEcCCCCEEEEEe--
Q 048511 154 QPE----KT---------TGI-----WMN---VVTV-------GELSH---------SALGFYGGHWSPDGRSILAHG-- 194 (351)
Q Consensus 154 d~~----~~---------~~~-----~~~---~~~~-------~~~~~---------~~~~i~~i~~~~~~~~l~~~~-- 194 (351)
.-. .. .++ +-+ .+.. .+... ....=++|.|--||.++++..
T Consensus 137 T~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~ 216 (1265)
T KOG1920|consen 137 TKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVE 216 (1265)
T ss_pred eccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEe
Confidence 321 00 000 000 1100 00000 011124589999999999844
Q ss_pred --eC-CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe---CCCcEEEEcCCCccccccCccceEEec
Q 048511 195 --YG-GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS---HDQTTRVFAPWKNVASLMGENSWHEVA 268 (351)
Q Consensus 195 --~d-g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~ 268 (351)
.+ ..|++||.+. . +-..-....+.-.+++|-|.|..+++-. .|+.|.+|..+.... ....-
T Consensus 217 ~~~~~RkirV~drEg-~-----Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h-------g~f~l 283 (1265)
T KOG1920|consen 217 SETGTRKIRVYDREG-A-----LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH-------GEFVL 283 (1265)
T ss_pred ccCCceeEEEecccc-h-----hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccc-------ccccc
Confidence 23 7899999873 1 1222222233445789999999988764 356799988644331 11122
Q ss_pred cccccccceeEEEEeeeCCCcEEEE---ecCCCeEEEEecC
Q 048511 269 RPQVHGHDINCVTIIQGKGNHRFVS---GADEKVARVFEAP 306 (351)
Q Consensus 269 ~~~~~~~~i~~~~~~~~~~~~~l~s---~~~dg~v~vw~~~ 306 (351)
........+..++|+. ++..|++ ......|++|-..
T Consensus 284 ~~p~de~~ve~L~Wns--~sdiLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 284 PFPLDEKEVEELAWNS--NSDILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred CCcccccchheeeecC--CCCceeeeecccccceEEEEEec
Confidence 2223333489999998 8888887 5666679999764
No 336
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.85 E-value=0.0084 Score=52.62 Aligned_cols=221 Identities=10% Similarity=0.050 Sum_probs=109.4
Q ss_pred eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEec
Q 048511 19 FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAG 98 (351)
Q Consensus 19 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 98 (351)
+.+..-++...++|++++.+ . =.++|.|..+|.+.|.|++....+.......
T Consensus 76 f~P~~l~~~~~g~vtal~~S--------~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~------------------- 127 (395)
T PF08596_consen 76 FLPLTLLDAKQGPVTALKNS--------D-IGFVAIGYESGSLVVIDLRGPAVIYNENIRE------------------- 127 (395)
T ss_dssp EEEEEEE---S-SEEEEEE---------B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG-------------------
T ss_pred cCchhheeccCCcEeEEecC--------C-CcEEEEEecCCcEEEEECCCCeEEeeccccc-------------------
Confidence 55566667778999999998 3 4599999999999999997665433211100
Q ss_pred CCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC-CCcceEEEEEeccccccccc
Q 048511 99 SSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK-TTGIWMNVVTVGELSHSALG 177 (351)
Q Consensus 99 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~ 177 (351)
...-......|+++.|..-... .|+ ....++++|...|.+.+|.+.. ..+.+...+.-. ...+...
T Consensus 128 --------~~~~~~~~~~vt~ieF~vm~~~-~D~---ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~-~~~~~~~ 194 (395)
T PF08596_consen 128 --------SFLSKSSSSYVTSIEFSVMTLG-GDG---YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGA-TTNHDSP 194 (395)
T ss_dssp ----------T-SS----EEEEEEEEEE-T-TSS---SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEE-E--SS--
T ss_pred --------cccccccccCeeEEEEEEEecC-CCc---ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeec-cccCCCc
Confidence 0001123345777777621110 121 1234588999999999998863 223333222211 1134445
Q ss_pred eEEEE-EcCC--------------------CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEee-----
Q 048511 178 FYGGH-WSPD--------------------GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWS----- 231 (351)
Q Consensus 178 i~~i~-~~~~--------------------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~s----- 231 (351)
|..+. ++.+ -+.+++...+..++++...+.+. ..+.+ ...-....+++-
T Consensus 195 i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~----~~K~~-~~~~~~~~~~vv~~~~~ 269 (395)
T PF08596_consen 195 ILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKG----AHKSF-DDPFLCSSASVVPTISR 269 (395)
T ss_dssp --EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---E----EEEE--SS-EEEEEEEEEEEE-E
T ss_pred eEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcc----cceee-ccccccceEEEEeeccc
Confidence 55544 3211 12345556678899998876531 12222 222233344453
Q ss_pred cCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccc----cccceeEEEEeeeCCCcEEEEecCC
Q 048511 232 RSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQV----HGHDINCVTIIQGKGNHRFVSGADE 297 (351)
Q Consensus 232 p~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~l~s~~~d 297 (351)
..+..|++-..+|.|++|.+...+ ++..... ....+....+++ +|+.++-.+..
T Consensus 270 ~~~~~Lv~l~~~G~i~i~SLP~Lk----------ei~~~~l~~~~d~~~~~~ssis~--~Gdi~~~~gps 327 (395)
T PF08596_consen 270 NGGYCLVCLFNNGSIRIYSLPSLK----------EIKSVSLPPPLDSRRLSSSSISR--NGDIFYWTGPS 327 (395)
T ss_dssp EEEEEEEEEETTSEEEEEETTT------------EEEEEE-SS---HHHHTT-EE-T--TS-EEEE-SSS
T ss_pred CCceEEEEEECCCcEEEEECCCch----------HhhcccCCCccccccccccEECC--CCCEEEEeCcc
Confidence 356678888899999999997766 3332222 223356677777 78877665543
No 337
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.84 E-value=6.3e-05 Score=41.19 Aligned_cols=38 Identities=37% Similarity=0.511 Sum_probs=33.4
Q ss_pred EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEe
Q 048511 20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWK 65 (351)
Q Consensus 20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd 65 (351)
.+...+.+|...|+++.|. +.+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFS--------PDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEEC--------CCCCEEEEecCCCeEEEcC
Confidence 4556778899999999999 7778999999999999996
No 338
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.81 E-value=0.0042 Score=57.55 Aligned_cols=262 Identities=9% Similarity=-0.018 Sum_probs=130.5
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceee---cc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQ---ST 78 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~---~~ 78 (351)
|-.-|.+.+|...+ .+ .-.....|..+|..+.|+ ++|..|+|+..-|.|.+|...-....+... ..
T Consensus 77 gwe~g~~~v~~~~~-~e--~htv~~th~a~i~~l~wS--------~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~he 145 (1416)
T KOG3617|consen 77 GWEMGVSDVQKTNT-TE--THTVVETHPAPIQGLDWS--------HDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHE 145 (1416)
T ss_pred ccccceeEEEecCC-ce--eeeeccCCCCCceeEEec--------CCCCeEEEcCCCceeEEEEeeeccccccchhhhhH
Confidence 44567889999887 32 222334799999999999 899999999999999999887433322111 11
Q ss_pred cccceeeeE--eeecCCe------EEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeE
Q 048511 79 YRKEVISLA--SYIEGPV------LVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTM 150 (351)
Q Consensus 79 ~~~~~~~~~--~~~~~~~------l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i 150 (351)
.+...+... .++++.- .++.+.+..+......+.. ..-.++.-+ + .++|.. |..++.+|+|
T Consensus 146 l~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~-~a~rs~~ks--g--v~~g~~------F~~~~~~GtV 214 (1416)
T KOG3617|consen 146 LNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKES-LAERSDEKS--G--VPKGTE------FLFAGKSGTV 214 (1416)
T ss_pred hhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccc-hhhcccccc--C--CCCCcE------EEEEcCCceE
Confidence 122333222 3334221 1122222111100000000 000011101 0 167777 8899999999
Q ss_pred EEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEccc-Cc---------------------
Q 048511 151 MIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVG-VD--------------------- 208 (351)
Q Consensus 151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~-~~--------------------- 208 (351)
+--|-. +......+.... ..+-|.+...-+.+-..+-++.++-... +.
T Consensus 215 yyvdq~---g~~~~V~k~dS~-------vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA 284 (1416)
T KOG3617|consen 215 YYVDQN---GRQRTVHKLDSE-------VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIA 284 (1416)
T ss_pred EEEcCC---CcEEEEEEccch-------HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccc
Confidence 887744 333333321110 1122222222222222222222221110 00
Q ss_pred ------ccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccc-cCccceEEeccccccccceeEEE
Q 048511 209 ------IDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASL-MGENSWHEVARPQVHGHDINCVT 281 (351)
Q Consensus 209 ------~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~ 281 (351)
.-.......+. ....+++++++..+..|..|...|.+.+|--....... .+...|. +.........|+.+.
T Consensus 285 ~sEssGvLr~~eKyg~e-~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~-l~~~~e~~g~I~~i~ 362 (1416)
T KOG3617|consen 285 CSESSGVLRKSEKYGLE-LGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWT-LNGKRESLGKISLIR 362 (1416)
T ss_pred cccccccccCCcchhhh-cCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEE-ecCchhhccceEEEE
Confidence 00000111111 24568999999999999999999999999644332111 0123343 223333445689999
Q ss_pred EeeeCCCcEEEEecCCCe
Q 048511 282 IIQGKGNHRFVSGADEKV 299 (351)
Q Consensus 282 ~~~~~~~~~l~s~~~dg~ 299 (351)
|.| -...++.-+....
T Consensus 363 Wg~--~k~~~avn~~~~v 378 (1416)
T KOG3617|consen 363 WGP--IKSTAAVNTEEDV 378 (1416)
T ss_pred ecc--ccchhhhhhhhhe
Confidence 988 4444444444333
No 339
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.75 E-value=0.016 Score=47.27 Aligned_cols=217 Identities=13% Similarity=0.115 Sum_probs=108.3
Q ss_pred EeeeecCCceeEEEeeCCcccCCCCC-ccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCc
Q 048511 23 CELKGHTDWIRSLDFSLPVCTSGEAI-SILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSS 101 (351)
Q Consensus 23 ~~~~~h~~~V~~l~~~~~~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 101 (351)
..+.+-...+..|+|. ++ +.++++....+.|...+.. ++.+..+.
T Consensus 15 ~~l~g~~~e~SGLTy~--------pd~~tLfaV~d~~~~i~els~~-G~vlr~i~------------------------- 60 (248)
T PF06977_consen 15 KPLPGILDELSGLTYN--------PDTGTLFAVQDEPGEIYELSLD-GKVLRRIP------------------------- 60 (248)
T ss_dssp EE-TT--S-EEEEEEE--------TTTTEEEEEETTTTEEEEEETT---EEEEEE-------------------------
T ss_pred eECCCccCCccccEEc--------CCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-------------------------
Confidence 3555666679999999 55 4566666667777666653 33332221
Q ss_pred eeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc----ceEEEEEeccccccccc
Q 048511 102 YQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG----IWMNVVTVGELSHSALG 177 (351)
Q Consensus 102 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~ 177 (351)
+.+ .+..-.|++. .++.+ +++--.++.+.++++..... .....+.+.....++..
T Consensus 61 --------l~g-~~D~EgI~y~------g~~~~------vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G 119 (248)
T PF06977_consen 61 --------LDG-FGDYEGITYL------GNGRY------VLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKG 119 (248)
T ss_dssp ---------SS--SSEEEEEE-------STTEE------EEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS-
T ss_pred --------CCC-CCCceeEEEE------CCCEE------EEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcc
Confidence 233 2457788888 67766 66655689999999844211 11233343333345567
Q ss_pred eEEEEEcCCCCEEEEEeeCCeEEEEEccc--CcccC----cccccccccccccEEEEEeecCC-CEEEEEeCCCcEEEEc
Q 048511 178 FYGGHWSPDGRSILAHGYGGAFHLWRNVG--VDIDN----WQPQKVPSGHFAAVMDISWSRSS-DYLLSVSHDQTTRVFA 250 (351)
Q Consensus 178 i~~i~~~~~~~~l~~~~~dg~i~~~d~~~--~~~~~----~~~~~~~~~~~~~v~~v~~sp~~-~~l~s~~~dg~i~vwd 250 (351)
+-.++|+|.++.|+++-...-..+|.++. ..... .............+.+++++|.. ++++.......|..+|
T Consensus 120 ~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d 199 (248)
T PF06977_consen 120 FEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD 199 (248)
T ss_dssp -EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-
T ss_pred eEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC
Confidence 89999999988888877776677777654 11000 00001011233457889999954 5666677788899999
Q ss_pred CCCccccccCccceEEecc-ccc---cccceeEEEEeeeCCCcEEEEecCCCeEEEE
Q 048511 251 PWKNVASLMGENSWHEVAR-PQV---HGHDINCVTIIQGKGNHRFVSGADEKVARVF 303 (351)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~-~~~---~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw 303 (351)
. .++. .....+.. ..+ .-...-.|+|.+ +|.+.+++ +-+..++|
T Consensus 200 ~-~G~~-----~~~~~L~~g~~gl~~~~~QpEGIa~d~--~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 200 R-QGRV-----VSSLSLDRGFHGLSKDIPQPEGIAFDP--DGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp T-T--E-----EEEEE-STTGGG-SS---SEEEEEE-T--T--EEEEE-TTTEEEEE
T ss_pred C-CCCE-----EEEEEeCCcccCcccccCCccEEEECC--CCCEEEEc-CCceEEEe
Confidence 4 3331 11111111 000 012367889988 77655554 55555554
No 340
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.70 E-value=6.7e-05 Score=41.09 Aligned_cols=37 Identities=30% Similarity=0.460 Sum_probs=32.3
Q ss_pred cccccccccccEEEEEeecCCCEEEEEeCCCcEEEEc
Q 048511 214 PQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFA 250 (351)
Q Consensus 214 ~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd 250 (351)
+...+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3455567888999999999999999999999999996
No 341
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.69 E-value=0.0017 Score=61.18 Aligned_cols=141 Identities=8% Similarity=-0.000 Sum_probs=93.1
Q ss_pred eEE-eecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC-----CCCEEEEEeeCCeEEEEEcccCcccCccc
Q 048511 141 ILS-ASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP-----DGRSILAHGYGGAFHLWRNVGVDIDNWQP 214 (351)
Q Consensus 141 l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-----~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 214 (351)
|+. ......|+-.|++. |+.+....+.. ..+|..++-.. .....+.|-.+..+..||.+-... ++
T Consensus 496 il~~~~~~~~ly~mDLe~--GKVV~eW~~~~----~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~---k~ 566 (794)
T PF08553_consen 496 ILLDPNNPNKLYKMDLER--GKVVEEWKVHD----DIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN---KL 566 (794)
T ss_pred EeecCCCCCceEEEecCC--CcEEEEeecCC----CcceeEecccccccccCCCceEEEECCCceEEeccCCCCC---ce
Confidence 444 34567788889998 88888887422 22344443221 133456788889999999986531 22
Q ss_pred c----cccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcE
Q 048511 215 Q----KVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHR 290 (351)
Q Consensus 215 ~----~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 290 (351)
+ +.+ .......+++-+.+| +||+|+.+|.||+||-. +. +....+.+-+.+|..|..+. ||++
T Consensus 567 v~~~~k~Y-~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~---------~AKT~lp~lG~pI~~iDvt~--DGkw 632 (794)
T PF08553_consen 567 VDSQSKQY-SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GK---------RAKTALPGLGDPIIGIDVTA--DGKW 632 (794)
T ss_pred eecccccc-ccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-ch---------hhhhcCCCCCCCeeEEEecC--CCcE
Confidence 2 111 234456777777776 68999999999999943 22 13334456778999999999 9999
Q ss_pred EEEecCCCeEEEEec
Q 048511 291 FVSGADEKVARVFEA 305 (351)
Q Consensus 291 l~s~~~dg~v~vw~~ 305 (351)
|++.+.. .+.+++.
T Consensus 633 ilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 633 ILATCKT-YLLLIDT 646 (794)
T ss_pred EEEeecc-eEEEEEE
Confidence 8877655 5566663
No 342
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00024 Score=63.12 Aligned_cols=95 Identities=17% Similarity=0.044 Sum_probs=74.1
Q ss_pred ccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEE-EEEeecCCCEEEEEeCCCcEEEEcCCC
Q 048511 175 ALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVM-DISWSRSSDYLLSVSHDQTTRVFAPWK 253 (351)
Q Consensus 175 ~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~-~v~~sp~~~~l~s~~~dg~i~vwd~~~ 253 (351)
...+..+.|+|.-..+|.+..+|.|.++.++- +.+.++.-|...++ +++|.|||+.||.|=.||+|++.|+..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~------qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNW------QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEecc------ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence 34578899999999999999999999998874 44666665666666 999999999999999999999999988
Q ss_pred ccccccCccceEEeccccccccceeEEEEee
Q 048511 254 NVASLMGENSWHEVARPQVHGHDINCVTIIQ 284 (351)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 284 (351)
+.. ....+.....+|.++-|.+
T Consensus 94 ~~~---------l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 94 GGR---------LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred CCc---------eeccccccccchheeeccc
Confidence 872 1111223344577777754
No 343
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.65 E-value=0.0081 Score=54.79 Aligned_cols=117 Identities=10% Similarity=0.006 Sum_probs=72.2
Q ss_pred CCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-CCcEEEEcCCCccccccCc-c
Q 048511 185 PDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-DQTTRVFAPWKNVASLMGE-N 262 (351)
Q Consensus 185 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~-~ 262 (351)
++|++... .++.|.+.|..+........+..+. -......+.++|||+++++++. +.+|.|.|+...+...... .
T Consensus 286 kdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 286 KAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred hCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 35665554 2567888888761000012233332 3445688999999999876654 8999999998765211000 0
Q ss_pred -ceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511 263 -SWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 263 -~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 307 (351)
.-..+..... +......+|.+ +|....+---|..|-.|++..
T Consensus 363 ~~~~vvaevev-GlGPLHTaFDg--~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 363 PRDAVVAEPEL-GLGPLHTAFDG--RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccceEEEeecc-CCCcceEEECC--CCCEEEeEeecceeEEEehHH
Confidence 0001222222 33345678888 788888999999999999774
No 344
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.64 E-value=0.015 Score=51.55 Aligned_cols=63 Identities=11% Similarity=0.068 Sum_probs=42.0
Q ss_pred EcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCc
Q 048511 183 WSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKN 254 (351)
Q Consensus 183 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~ 254 (351)
++.+....+....++.+.+.+-... ..+. ..+++..++.||+++++|.-..+|.+.+....-.
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~--------~~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSF--------KQID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred eecCcceEEEEecCCEEEEEEcccc--------cccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence 4445555555556666665443221 1122 2457999999999999999999999988876444
No 345
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.57 E-value=0.029 Score=48.27 Aligned_cols=180 Identities=11% Similarity=0.013 Sum_probs=103.2
Q ss_pred ceEEEEEccCC----CceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511 6 NKIHLYRGQRT----GKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK 81 (351)
Q Consensus 6 g~i~vw~~~~~----~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~ 81 (351)
|.|.++++... .+++.+... ...++|++|+-. ++ +|+.+. .+.|.+|++...+.+...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~---------~~-~lv~~~-g~~l~v~~l~~~~~l~~~------ 123 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF---------NG-RLVVAV-GNKLYVYDLDNSKTLLKK------ 123 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE---------TT-EEEEEE-TTEEEEEEEETTSSEEEE------
T ss_pred cEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh---------CC-EEEEee-cCEEEEEEccCcccchhh------
Confidence 99999999882 245554444 357899999877 24 344443 478999999877611110
Q ss_pred ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcc
Q 048511 82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGI 161 (351)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 161 (351)
..+. ....+.++... +++ ++.|.....+.++..+.. ..
T Consensus 124 --------------------------~~~~-~~~~i~sl~~~--------~~~------I~vgD~~~sv~~~~~~~~-~~ 161 (321)
T PF03178_consen 124 --------------------------AFYD-SPFYITSLSVF--------KNY------ILVGDAMKSVSLLRYDEE-NN 161 (321)
T ss_dssp --------------------------EEE--BSSSEEEEEEE--------TTE------EEEEESSSSEEEEEEETT-TE
T ss_pred --------------------------heec-ceEEEEEEecc--------ccE------EEEEEcccCEEEEEEEcc-CC
Confidence 1111 12257777765 336 889988888888866642 22
Q ss_pred eEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc------CcccccccccccccEEEE---Eeec
Q 048511 162 WMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID------NWQPQKVPSGHFAAVMDI---SWSR 232 (351)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~------~~~~~~~~~~~~~~v~~v---~~sp 232 (351)
.+..+.. ......++++.|-++++.++++..+|.+.++........ .+.....+. ....|+++ ++.|
T Consensus 162 ~l~~va~---d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~ 237 (321)
T PF03178_consen 162 KLILVAR---DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIP 237 (321)
T ss_dssp -EEEEEE---ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS-
T ss_pred EEEEEEe---cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeee
Confidence 2222221 233556888888866679999999999999988632111 011112222 23456666 5555
Q ss_pred C--C------CEEEEEeCCCcEEEE
Q 048511 233 S--S------DYLLSVSHDQTTRVF 249 (351)
Q Consensus 233 ~--~------~~l~s~~~dg~i~vw 249 (351)
. + ..++.++.+|.|.+.
T Consensus 238 ~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 238 RSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp -SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cCCCCcccccceEEEEecCCEEEEE
Confidence 1 2 137777889988844
No 346
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.54 E-value=0.017 Score=53.58 Aligned_cols=215 Identities=11% Similarity=0.122 Sum_probs=120.7
Q ss_pred ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCC------CcEEEEecCCCcccceeeccc
Q 048511 6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQD------KVIRIWKLALRGSSANTQSTY 79 (351)
Q Consensus 6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d------g~i~iwd~~~~~~~~~~~~~~ 79 (351)
..+..||..+ +.+.....+.... .-.+++.. ++...++||.| .++..||....+... .....
T Consensus 301 ~~ve~yd~~~-~~w~~~a~m~~~r-~~~~~~~~---------~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~ 368 (571)
T KOG4441|consen 301 RSVECYDPKT-NEWSSLAPMPSPR-CRVGVAVL---------NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMN 368 (571)
T ss_pred ceeEEecCCc-CcEeecCCCCccc-ccccEEEE---------CCEEEEEccccCCCcccceEEEecCCCCceec-cCCcc
Confidence 4688899998 7777777776433 34455555 36788899998 346777877766433 11111
Q ss_pred ccceeeeEeeecCCeEEecCCceeEEE------------EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC
Q 048511 80 RKEVISLASYIEGPVLVAGSSSYQVSV------------ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD 147 (351)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~------------~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d 147 (351)
......-....+|.+.++|+.++.-.+ |................. -++.+ .+.|+.+
T Consensus 369 ~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~-----~~g~i------Yi~GG~~ 437 (571)
T KOG4441|consen 369 TKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV-----LGGKL------YIIGGGD 437 (571)
T ss_pred CccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE-----ECCEE------EEEcCcC
Confidence 222223334557888888887754321 111111222222222221 35666 7888754
Q ss_pred ------CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCC-----eEEEEEcccCcccCccccc
Q 048511 148 ------KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGG-----AFHLWRNVGVDIDNWQPQK 216 (351)
Q Consensus 148 ------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~ 216 (351)
..+..||..+ ..|...-.+.. ...... ++ .-++.+.+.|+.|+ +|..||..+.+ |..+.
T Consensus 438 ~~~~~l~sve~YDP~t--~~W~~~~~M~~---~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~---W~~v~ 507 (571)
T KOG4441|consen 438 GSSNCLNSVECYDPET--NTWTLIAPMNT---RRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQ---WTMVA 507 (571)
T ss_pred CCccccceEEEEcCCC--CceeecCCccc---ccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCc---eeEcc
Confidence 4578888888 65554333211 111111 22 23677788888776 37778887765 44454
Q ss_pred ccccccccEEEEEeecCCCEEEEEeCCC-----cEEEEcCCCcc
Q 048511 217 VPSGHFAAVMDISWSRSSDYLLSVSHDQ-----TTRVFAPWKNV 255 (351)
Q Consensus 217 ~~~~~~~~v~~v~~sp~~~~l~s~~~dg-----~i~vwd~~~~~ 255 (351)
.+......+..+.+ +++..++|+.|+ +|..||..+.+
T Consensus 508 ~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 508 PMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred cCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence 44433333322222 566778888775 57777776553
No 347
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.54 E-value=0.009 Score=41.38 Aligned_cols=104 Identities=17% Similarity=0.104 Sum_probs=65.3
Q ss_pred eeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEecc
Q 048511 32 IRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLI 111 (351)
Q Consensus 32 V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 111 (351)
|++|++. .-.+...+.|+.|+.|..||+|+-.. .+.++.
T Consensus 2 V~al~~~----d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei~----------------------------------- 40 (111)
T PF14783_consen 2 VTALCLF----DFDGDGENELLVGSDDFEIRVFKGDE--IVAEIT----------------------------------- 40 (111)
T ss_pred eeEEEEE----ecCCCCcceEEEecCCcEEEEEeCCc--EEEEEe-----------------------------------
Confidence 5677766 11112346899999999999998652 221111
Q ss_pred ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC---CC-
Q 048511 112 GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP---DG- 187 (351)
Q Consensus 112 ~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~---~~- 187 (351)
-.+.|.++.-. .. .. |+.+..+|+|-+|+-.. ..|... ....+.++++.. +|
T Consensus 41 -e~~~v~~L~~~------~~-~~------F~Y~l~NGTVGvY~~~~--RlWRiK--------SK~~~~~~~~~D~~gdG~ 96 (111)
T PF14783_consen 41 -ETDKVTSLCSL------GG-GR------FAYALANGTVGVYDRSQ--RLWRIK--------SKNQVTSMAFYDINGDGV 96 (111)
T ss_pred -cccceEEEEEc------CC-CE------EEEEecCCEEEEEeCcc--eeeeec--------cCCCeEEEEEEcCCCCCc
Confidence 34568888777 23 44 89999999999998755 333322 122355555432 33
Q ss_pred CEEEEEeeCCeEE
Q 048511 188 RSILAHGYGGAFH 200 (351)
Q Consensus 188 ~~l~~~~~dg~i~ 200 (351)
..|++|-.+|.|-
T Consensus 97 ~eLI~GwsnGkve 109 (111)
T PF14783_consen 97 PELIVGWSNGKVE 109 (111)
T ss_pred eEEEEEecCCeEE
Confidence 3788888888774
No 348
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.51 E-value=0.046 Score=46.24 Aligned_cols=110 Identities=10% Similarity=0.006 Sum_probs=67.6
Q ss_pred ceEEEEEcCCCCEEEEEeeC-CeEEEEEccc--CcccCcccccccccccccEEEEEeecCCCEEEEEeCCC-cEEEEcCC
Q 048511 177 GFYGGHWSPDGRSILAHGYG-GAFHLWRNVG--VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQ-TTRVFAPW 252 (351)
Q Consensus 177 ~i~~i~~~~~~~~l~~~~~d-g~i~~~d~~~--~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg-~i~vwd~~ 252 (351)
.-..++||||++.|+.+... +.|+-|++.. ...........+....+..-.++...+|.+.+++-.+| .|.+|+..
T Consensus 164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence 34679999999888877765 8888888863 11111111222223445666788888888876555554 89999987
Q ss_pred CccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC
Q 048511 253 KNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE 297 (351)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d 297 (351)
++ .+.....+...+++++|--..-..+++++...
T Consensus 244 -G~----------l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 244 -GK----------LLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred -Cc----------EEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 54 33333344456888888652224455555544
No 349
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.48 E-value=0.031 Score=44.80 Aligned_cols=143 Identities=8% Similarity=-0.059 Sum_probs=87.0
Q ss_pred ccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCC
Q 048511 49 SILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTA 128 (351)
Q Consensus 49 ~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ 128 (351)
..+++.|+..+.+.--|..++....+... ...+.+-+..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il------------------------------------g~RiE~sa~v----- 61 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL------------------------------------GVRIECSAIV----- 61 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh------------------------------------CceeeeeeEE-----
Confidence 56777888888888888877765543321 1223332222
Q ss_pred CCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCc
Q 048511 129 PSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVD 208 (351)
Q Consensus 129 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~ 208 (351)
-+++ ++.|...|.+++.+..+ +.....+.... .-. ......+++..+..++.|+..+..|.++.
T Consensus 62 --vgdf------VV~GCy~g~lYfl~~~t--Gs~~w~f~~~~----~vk-~~a~~d~~~glIycgshd~~~yalD~~~~- 125 (354)
T KOG4649|consen 62 --VGDF------VVLGCYSGGLYFLCVKT--GSQIWNFVILE----TVK-VRAQCDFDGGLIYCGSHDGNFYALDPKTY- 125 (354)
T ss_pred --ECCE------EEEEEccCcEEEEEecc--hhheeeeeehh----hhc-cceEEcCCCceEEEecCCCcEEEeccccc-
Confidence 2445 89999999999999999 65444444211 111 23455789999999999999999999886
Q ss_pred ccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCC
Q 048511 209 IDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPW 252 (351)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~ 252 (351)
.++...+-..+.-.+=+..|....|..+...|.+.--...
T Consensus 126 ----~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 126 ----GCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred ----ceEEecccCCceeccceecCCCceEEEEeccceEEEEccC
Confidence 5566655433333333445522234444445554443433
No 350
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.47 E-value=0.021 Score=46.64 Aligned_cols=180 Identities=10% Similarity=0.109 Sum_probs=117.4
Q ss_pred ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCE
Q 048511 110 LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRS 189 (351)
Q Consensus 110 ~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 189 (351)
+.+-...|.++.|+ |+.+. |++......-.++=-.. |..+.++++... ...-.|.+..++++
T Consensus 81 i~g~~~nvS~LTyn------p~~rt------LFav~n~p~~iVElt~~--GdlirtiPL~g~----~DpE~Ieyig~n~f 142 (316)
T COG3204 81 ILGETANVSSLTYN------PDTRT------LFAVTNKPAAIVELTKE--GDLIRTIPLTGF----SDPETIEYIGGNQF 142 (316)
T ss_pred cccccccccceeeC------CCcce------EEEecCCCceEEEEecC--CceEEEeccccc----CChhHeEEecCCEE
Confidence 45555669999999 55565 66665555555554444 888888875432 23456788888888
Q ss_pred EEEEeeCCeEEEEEcccCcc-cCc----ccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccce
Q 048511 190 ILAHGYGGAFHLWRNVGVDI-DNW----QPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSW 264 (351)
Q Consensus 190 l~~~~~dg~i~~~d~~~~~~-~~~----~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 264 (351)
.++--.++.+.++.+..... ... -++............++|.|..+.|+.+-+-.-+.||.+.......
T Consensus 143 vi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l------ 216 (316)
T COG3204 143 VIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSL------ 216 (316)
T ss_pred EEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccc------
Confidence 88888889999988755421 000 0111111224567889999998888888888888888776433111
Q ss_pred EEecccccc-------ccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhceee
Q 048511 265 HEVARPQVH-------GHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLNH 315 (351)
Q Consensus 265 ~~~~~~~~~-------~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~ 315 (351)
.......+ -..|..+.|.+ ..+.+++-+.+++.+.-.|..|..+..+.-
T Consensus 217 -~~~~~~~~~~~~~~f~~DvSgl~~~~-~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL 272 (316)
T COG3204 217 -SVHASLDPTADRDLFVLDVSGLEFNA-ITNSLLVLSDESRRLLEVDLSGEVIELLSL 272 (316)
T ss_pred -ccccccCcccccceEeeccccceecC-CCCcEEEEecCCceEEEEecCCCeeeeEEe
Confidence 11111111 23478888887 457888888899999999999887665543
No 351
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.46 E-value=0.084 Score=48.25 Aligned_cols=108 Identities=11% Similarity=0.097 Sum_probs=60.1
Q ss_pred EEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE------------------eCCCcEEEEc
Q 048511 189 SILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV------------------SHDQTTRVFA 250 (351)
Q Consensus 189 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~------------------~~dg~i~vwd 250 (351)
.+++++.+|.+..+|.++++. +-..... ...+..+| ..++.+ ..+|.+.-.|
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~-----~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD 372 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKL-----ISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALD 372 (488)
T ss_pred EEEEECCCceEEEEECCCCcE-----eeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEe
Confidence 577888899999999999853 2221100 11123333 122221 2357788888
Q ss_pred CCCccccccCccceEEecccccc----ccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhcee
Q 048511 251 PWKNVASLMGENSWHEVARPQVH----GHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLN 314 (351)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~ 314 (351)
..+++ ..|+.-.....+ +.+...-.... .+..|+.++.||.|+.+|.. |+.+-+++
T Consensus 373 ~~tG~------~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 373 PKTGK------VVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred CCCCc------EeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 87776 345432210000 01111111111 46788888999999999976 77776654
No 352
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.001 Score=59.22 Aligned_cols=94 Identities=12% Similarity=0.111 Sum_probs=68.4
Q ss_pred cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceE-EEEEcCCCCEEEEE
Q 048511 115 DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFY-GGHWSPDGRSILAH 193 (351)
Q Consensus 115 ~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~-~i~~~~~~~~l~~~ 193 (351)
..+.-+.|+ |...+ +|.+..+|.|.+..+.- +.+-++. .+...++ +++|.|||+.|++|
T Consensus 21 ~~i~~~ewn------P~~dL------iA~~t~~gelli~R~n~---qRlwtip-----~p~~~v~~sL~W~~DGkllaVg 80 (665)
T KOG4640|consen 21 INIKRIEWN------PKMDL------IATRTEKGELLIHRLNW---QRLWTIP-----IPGENVTASLCWRPDGKLLAVG 80 (665)
T ss_pred cceEEEEEc------Cccch------hheeccCCcEEEEEecc---ceeEecc-----CCCCccceeeeecCCCCEEEEE
Confidence 357788999 67777 99999999999988773 2223333 3444455 99999999999999
Q ss_pred eeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511 194 GYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR 232 (351)
Q Consensus 194 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 232 (351)
-.||+|++.|.+++.. .......-...|.++-|.+
T Consensus 81 ~kdG~I~L~Dve~~~~----l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 81 FKDGTIRLHDVEKGGR----LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ecCCeEEEEEccCCCc----eeccccccccchheeeccc
Confidence 9999999999998742 2222222445677777864
No 353
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.43 E-value=0.019 Score=39.87 Aligned_cols=105 Identities=10% Similarity=0.005 Sum_probs=66.1
Q ss_pred eEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC
Q 048511 117 VYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196 (351)
Q Consensus 117 v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 196 (351)
|+++++.+.. .+|. +-|++|+.|..|++|+-.. .+..+. ....|.+++-... ..++.+-.+
T Consensus 2 V~al~~~d~d---~dg~-----~eLlvGs~D~~IRvf~~~e----~~~Ei~------e~~~v~~L~~~~~-~~F~Y~l~N 62 (111)
T PF14783_consen 2 VTALCLFDFD---GDGE-----NELLVGSDDFEIRVFKGDE----IVAEIT------ETDKVTSLCSLGG-GRFAYALAN 62 (111)
T ss_pred eeEEEEEecC---CCCc-----ceEEEecCCcEEEEEeCCc----EEEEEe------cccceEEEEEcCC-CEEEEEecC
Confidence 5667766422 2222 2399999999999998654 333332 3446777776655 668889999
Q ss_pred CeEEEEEcccCcccCcccccccccccccEEEEEeec---CC-CEEEEEeCCCcEEE
Q 048511 197 GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR---SS-DYLLSVSHDQTTRV 248 (351)
Q Consensus 197 g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp---~~-~~l~s~~~dg~i~v 248 (351)
|+|-+|+-... +-..+ ....++++++.. +| .-|++|-.+|.|-+
T Consensus 63 GTVGvY~~~~R-------lWRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 63 GTVGVYDRSQR-------LWRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred CEEEEEeCcce-------eeeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 99999976442 22222 223366665543 23 35888888887743
No 354
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.33 E-value=0.075 Score=45.00 Aligned_cols=153 Identities=9% Similarity=0.040 Sum_probs=84.2
Q ss_pred EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee-----------CCeEEEEEcccCcccCccccccc
Q 048511 150 MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY-----------GGAFHLWRNVGVDIDNWQPQKVP 218 (351)
Q Consensus 150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-----------dg~i~~~d~~~~~~~~~~~~~~~ 218 (351)
+.+++.+. +..+..+..............+...|+|.+.++... -|.|+.+|. .+ ..++.+
T Consensus 87 ~~~~~~~~--~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g-----~~~~l~ 158 (307)
T COG3386 87 VRLLDPDT--GGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DG-----GVVRLL 158 (307)
T ss_pred cEEEeccC--CceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CC-----CEEEee
Confidence 66677654 333222221111222345567888899886665444 133444443 22 234444
Q ss_pred ccccccEEEEEeecCCCEEEEEeC-CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC
Q 048511 219 SGHFAAVMDISWSRSSDYLLSVSH-DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE 297 (351)
Q Consensus 219 ~~~~~~v~~v~~sp~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d 297 (351)
..+-..-+.|+||||++.|+.+.. .+.|.-|++....... ... .............-.++... +|.+.+++-.+
T Consensus 159 ~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~--~~~-~~~~~~~~~~G~PDG~~vDa--dG~lw~~a~~~ 233 (307)
T COG3386 159 DDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPI--GGR-RGFVDFDEEPGLPDGMAVDA--DGNLWVAAVWG 233 (307)
T ss_pred cCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCcc--CCc-ceEEEccCCCCCCCceEEeC--CCCEEEecccC
Confidence 444555678999999988776654 5788888775311100 000 11111111223355667776 77777655555
Q ss_pred C-eEEEEecCchhhhceee
Q 048511 298 K-VARVFEAPLSFLKTLNH 315 (351)
Q Consensus 298 g-~v~vw~~~~~~~~~~~~ 315 (351)
| .|.+|+..++.+..+.-
T Consensus 234 g~~v~~~~pdG~l~~~i~l 252 (307)
T COG3386 234 GGRVVRFNPDGKLLGEIKL 252 (307)
T ss_pred CceEEEECCCCcEEEEEEC
Confidence 4 99999998877766543
No 355
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.27 E-value=0.013 Score=55.31 Aligned_cols=103 Identities=13% Similarity=0.183 Sum_probs=71.6
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG 220 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 220 (351)
.+.|-.++.+..||+|......+. ...... .......|++-+.+| +||+|+.+|.||+||--.. .....+.+
T Consensus 545 tflGls~n~lfriDpR~~~~k~v~-~~~k~Y-~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~-----~AKT~lp~ 616 (794)
T PF08553_consen 545 TFLGLSDNSLFRIDPRLSGNKLVD-SQSKQY-SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGK-----RAKTALPG 616 (794)
T ss_pred eEEEECCCceEEeccCCCCCceee-cccccc-ccCCCceEEEecCCc-eEEEEeCCCcEEeecccch-----hhhhcCCC
Confidence 667778888999999974322221 111111 233456777766655 6999999999999995332 33445666
Q ss_pred ccccEEEEEeecCCCEEEEEeCCCcEEEEcCC
Q 048511 221 HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPW 252 (351)
Q Consensus 221 ~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~ 252 (351)
-..+|..|+.+.||++|++.+ +..+.|++..
T Consensus 617 lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 617 LGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred CCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 678999999999999987655 5677788763
No 356
>PHA02713 hypothetical protein; Provisional
Probab=97.25 E-value=0.012 Score=54.55 Aligned_cols=96 Identities=8% Similarity=0.154 Sum_probs=55.1
Q ss_pred CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC------CeEEEEEccc-CcccCccccccccc
Q 048511 148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG------GAFHLWRNVG-VDIDNWQPQKVPSG 220 (351)
Q Consensus 148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------g~i~~~d~~~-~~~~~~~~~~~~~~ 220 (351)
..+..||+++ ..|...-.+ ....... +++ .-+++..+.|+.+ ..+..||.++ .+ |..+..+..
T Consensus 432 ~~ve~YDP~t--d~W~~v~~m---~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~---W~~~~~m~~ 501 (557)
T PHA02713 432 NKVIRYDTVN--NIWETLPNF---WTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG---WELITTTES 501 (557)
T ss_pred ceEEEECCCC--CeEeecCCC---CcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCC---eeEccccCc
Confidence 3578889888 655433221 1111111 122 2356666777654 2467888887 43 555555554
Q ss_pred ccccEEEEEeecCCCEEEEEeCCC--cEEEEcCCCcc
Q 048511 221 HFAAVMDISWSRSSDYLLSVSHDQ--TTRVFAPWKNV 255 (351)
Q Consensus 221 ~~~~v~~v~~sp~~~~l~s~~~dg--~i~vwd~~~~~ 255 (351)
.......+.+ ++++.++|+.|+ .+..||..+.+
T Consensus 502 ~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 502 RLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred ccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 4333333333 678889999888 77888887664
No 357
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.23 E-value=0.12 Score=45.06 Aligned_cols=256 Identities=9% Similarity=0.051 Sum_probs=125.3
Q ss_pred CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccc-----
Q 048511 5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTY----- 79 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~----- 79 (351)
.+.+.|||+++ ++...+.. ....+....|+ |+|+.+|-.. ++.|.+++..++...+....+.
T Consensus 22 ~~~y~i~d~~~-~~~~~l~~---~~~~~~~~~~s--------P~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~n 88 (353)
T PF00930_consen 22 KGDYYIYDIET-GEITPLTP---PPPKLQDAKWS--------PDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYN 88 (353)
T ss_dssp EEEEEEEETTT-TEEEESS----EETTBSEEEE---------SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEE
T ss_pred ceeEEEEecCC-CceEECcC---Cccccccceee--------cCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEc
Confidence 46788999998 64443332 26788999999 8899988776 6789999887664443333221
Q ss_pred -----------ccceeeeEeeecCCeEEecCCc-eeE---EEEEeccccc--cceEEEEecCCCCCCCCCcccCCCceeE
Q 048511 80 -----------RKEVISLASYIEGPVLVAGSSS-YQV---SVESLLIGHE--DWVYSVQWEPPSTAPSDGVSCQQPSSIL 142 (351)
Q Consensus 80 -----------~~~~~~~~~~~~~~~l~~~~~~-~~~---~~~~~~~~h~--~~v~~l~~~p~~~~~~~~~~~~~~~~l~ 142 (351)
-.....+.|+|+++.|+....+ ..+ .+......+. -.+..+.+- .-|.- -
T Consensus 89 G~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YP------k~G~~------n- 155 (353)
T PF00930_consen 89 GVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYP------KAGDP------N- 155 (353)
T ss_dssp SB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--------BTTS---------
T ss_pred CccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccC------CCCCc------C-
Confidence 1224577899999988874322 222 2222222111 134444442 22222 1
Q ss_pred EeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-----CeEEEEEcccCcccCcccccc
Q 048511 143 SASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-----GAFHLWRNVGVDIDNWQPQKV 217 (351)
Q Consensus 143 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~ 217 (351)
..-.+.|+|+.+ ++....-...........+..+.|.++++.++..-.+ ..+.++|..++.. +.+.
T Consensus 156 ---p~v~l~v~~~~~--~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~---~~~~- 226 (353)
T PF00930_consen 156 ---PRVSLFVVDLAS--GKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET---RVVL- 226 (353)
T ss_dssp ----EEEEEEEESSS--TCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC---EEEE-
T ss_pred ---CceEEEEEECCC--CcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce---eEEE-
Confidence 111366788877 4332111111112335568899999999844443322 2466666665432 1111
Q ss_pred cccccccE---EEEEee-cCCC-EEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeE-EEEeeeCCCcEE
Q 048511 218 PSGHFAAV---MDISWS-RSSD-YLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINC-VTIIQGKGNHRF 291 (351)
Q Consensus 218 ~~~~~~~v---~~v~~s-p~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~l 291 (351)
.......| ....|. +++. +|.....||.-+||-+..... ....+....-.|+. +.+++ .++.++
T Consensus 227 ~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~---------~~~~lT~G~~~V~~i~~~d~-~~~~iy 296 (353)
T PF00930_consen 227 EETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG---------KPRQLTSGDWEVTSILGWDE-DNNRIY 296 (353)
T ss_dssp EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS---------EEEESS-SSS-EEEEEEEEC-TSSEEE
T ss_pred EecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccc---------ceeccccCceeecccceEcC-CCCEEE
Confidence 11122222 244554 5554 444555677655554433221 11122223334644 55666 234444
Q ss_pred EEecCC--CeEEEEec
Q 048511 292 VSGADE--KVARVFEA 305 (351)
Q Consensus 292 ~s~~~d--g~v~vw~~ 305 (351)
.++..+ +.-.||.+
T Consensus 297 f~a~~~~p~~r~lY~v 312 (353)
T PF00930_consen 297 FTANGDNPGERHLYRV 312 (353)
T ss_dssp EEESSGGTTSBEEEEE
T ss_pred EEecCCCCCceEEEEE
Confidence 555543 34455543
No 358
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.12 E-value=0.19 Score=46.85 Aligned_cols=75 Identities=13% Similarity=0.071 Sum_probs=44.4
Q ss_pred ccceEEEEEcCCCCEEEEEeeCCeEEEE---EcccCcccCcccccccc-cccccEEEEEeecCCCEEEEEeCCCcEEEEc
Q 048511 175 ALGFYGGHWSPDGRSILAHGYGGAFHLW---RNVGVDIDNWQPQKVPS-GHFAAVMDISWSRSSDYLLSVSHDQTTRVFA 250 (351)
Q Consensus 175 ~~~i~~i~~~~~~~~l~~~~~dg~i~~~---d~~~~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd 250 (351)
...|..+.|+|||..++... ++.|++= ....+... ......+. .-...+.++.|.+++.++ ++..++...+|.
T Consensus 447 ~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~-l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~ 523 (591)
T PRK13616 447 PGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYA-LTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWY 523 (591)
T ss_pred CCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCcee-ecccEEeecccCCccccceEecCCEEE-EEecCCCCceEE
Confidence 34699999999999887765 5777773 32333211 11111122 223346789999998855 555555555565
Q ss_pred CC
Q 048511 251 PW 252 (351)
Q Consensus 251 ~~ 252 (351)
+.
T Consensus 524 v~ 525 (591)
T PRK13616 524 VN 525 (591)
T ss_pred Ee
Confidence 43
No 359
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.03 E-value=0.091 Score=48.82 Aligned_cols=223 Identities=11% Similarity=0.118 Sum_probs=118.8
Q ss_pred CccEEEEeeCCC------cEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCc-eeE--EEEEeccccccc-e
Q 048511 48 ISILLVSSSQDK------VIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSS-YQV--SVESLLIGHEDW-V 117 (351)
Q Consensus 48 ~~~~l~t~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~--~~~~~~~~h~~~-v 117 (351)
.+.+++.||.++ .+..+|..+........... .....-+...++.+.++|+.+ +.. .....+..+.+. .
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~-~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS-PRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCc-ccccccEEEECCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 466777888774 57788887775433222221 122333344566788888877 322 222222222221 0
Q ss_pred ---------EEEEecCCCCCCCCCcccCCCceeEEeecCCe-----EEEEeccCCCcceEEEEEeccccccccceEEEEE
Q 048511 118 ---------YSVQWEPPSTAPSDGVSCQQPSSILSASMDKT-----MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHW 183 (351)
Q Consensus 118 ---------~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 183 (351)
..+.... -+|.+ .|+|+.||. |-.||.++ .+|...-.+ .......- ..
T Consensus 363 ~~a~M~~~R~~~~v~~-----l~g~i------YavGG~dg~~~l~svE~YDp~~--~~W~~va~m---~~~r~~~g--v~ 424 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAV-----LDGKL------YAVGGFDGEKSLNSVECYDPVT--NKWTPVAPM---LTRRSGHG--VA 424 (571)
T ss_pred ccCCccCccccceeEE-----ECCEE------EEEeccccccccccEEEecCCC--CcccccCCC---CcceeeeE--EE
Confidence 0011110 34556 788888854 77788777 443322211 01111111 12
Q ss_pred cCCCCEEEEEeeC------CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCC-----cEEEEcCC
Q 048511 184 SPDGRSILAHGYG------GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQ-----TTRVFAPW 252 (351)
Q Consensus 184 ~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg-----~i~vwd~~ 252 (351)
.-+|...++|+.+ .++..||..++. |..+..+..-..... ++. -++.+.+.|+.|+ +|..||..
T Consensus 425 ~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~---W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~ 499 (571)
T KOG4441|consen 425 VLGGKLYIIGGGDGSSNCLNSVECYDPETNT---WTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPE 499 (571)
T ss_pred EECCEEEEEcCcCCCccccceEEEEcCCCCc---eeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCC
Confidence 2367777888755 357788887765 444444443332222 322 2567778888776 37778887
Q ss_pred CccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCe-----EEEEecC
Q 048511 253 KNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKV-----ARVFEAP 306 (351)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~-----v~vw~~~ 306 (351)
+. .|..+.........+....+ ++.+.+.|+.||. |..||..
T Consensus 500 ~~--------~W~~v~~m~~~rs~~g~~~~----~~~ly~vGG~~~~~~l~~ve~ydp~ 546 (571)
T KOG4441|consen 500 TN--------QWTMVAPMTSPRSAVGVVVL----GGKLYAVGGFDGNNNLNTVECYDPE 546 (571)
T ss_pred CC--------ceeEcccCccccccccEEEE----CCEEEEEecccCccccceeEEcCCC
Confidence 66 47777655444433333333 5788899987764 5555544
No 360
>PHA03098 kelch-like protein; Provisional
Probab=97.00 E-value=0.078 Score=49.20 Aligned_cols=106 Identities=13% Similarity=0.118 Sum_probs=53.8
Q ss_pred CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC--------CeEEEEEcccCcccCcccccccc
Q 048511 148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG--------GAFHLWRNVGVDIDNWQPQKVPS 219 (351)
Q Consensus 148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--------g~i~~~d~~~~~~~~~~~~~~~~ 219 (351)
..+..||+.+ ..+...-. .+...... +++ ..++..++.|+.+ ..+.+||..+.+ |..+..+.
T Consensus 406 ~~v~~yd~~t--~~W~~~~~---~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~---W~~~~~~~ 475 (534)
T PHA03098 406 KTVECFSLNT--NKWSKGSP---LPISHYGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK---WTELSSLN 475 (534)
T ss_pred ceEEEEeCCC--CeeeecCC---CCccccCc-eEE-EECCEEEEECCccCCCCCcccceEEEecCCCCc---eeeCCCCC
Confidence 4578888887 55543221 11111111 122 2355666666543 238888887754 33333222
Q ss_pred cccccEEEEEeecCCCEEEEEeCC-----CcEEEEcCCCccccccCccceEEecccccc
Q 048511 220 GHFAAVMDISWSRSSDYLLSVSHD-----QTTRVFAPWKNVASLMGENSWHEVARPQVH 273 (351)
Q Consensus 220 ~~~~~v~~v~~sp~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 273 (351)
........+. -++++++.|+.+ ..+.+||..+. .|..+..+...
T Consensus 476 ~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~--------~W~~~~~~p~~ 524 (534)
T PHA03098 476 FPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTN--------TWTLFCKFPKV 524 (534)
T ss_pred cccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCC--------EEEecCCCccc
Confidence 1111112222 266777777654 46888887655 47766654433
No 361
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.00 E-value=0.0036 Score=48.95 Aligned_cols=141 Identities=10% Similarity=0.038 Sum_probs=79.9
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG 220 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 220 (351)
+..-+.|+.|+-++++...-.+.. . ..+... ...-.-+..+++|+.+|.|.+|....-. ........
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rs--e----~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g----~~~d~~~s 99 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRS--E----RFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEG----AHSDRVCS 99 (238)
T ss_pred hccccCCcccccchhhhhhhhhhh--h----hhhhcc---eeecccCceEEeecccceEEEecCCccc----hHHHhhhc
Confidence 556678888888888762111110 0 011111 1112235679999999999999876321 11111111
Q ss_pred ccccE-EEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccc-cceeEEEEeeeCCCcEEEEe--cC
Q 048511 221 HFAAV-MDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHG-HDINCVTIIQGKGNHRFVSG--AD 296 (351)
Q Consensus 221 ~~~~v-~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~s~--~~ 296 (351)
-...| ..|.--.++.+..+++.||.||.|++.-.+ .+.....|+ .++.....+. .++.++.. |.
T Consensus 100 ~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k----------~~g~~g~h~~~~~e~~ivv~--sd~~i~~a~~S~ 167 (238)
T KOG2444|consen 100 GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK----------VLGYVGQHNFESGEELIVVG--SDEFLKIADTSH 167 (238)
T ss_pred ccccceeccccccccceeEEeccCCceeeeccccCc----------eeeeeccccCCCcceeEEec--CCceEEeecccc
Confidence 12222 222223355678899999999999997665 333333454 4455555554 46666666 77
Q ss_pred CCeEEEEecC
Q 048511 297 EKVARVFEAP 306 (351)
Q Consensus 297 dg~v~vw~~~ 306 (351)
|..++.|++.
T Consensus 168 d~~~k~W~ve 177 (238)
T KOG2444|consen 168 DRVLKKWNVE 177 (238)
T ss_pred chhhhhcchh
Confidence 7777777764
No 362
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.99 E-value=0.18 Score=42.56 Aligned_cols=158 Identities=13% Similarity=0.234 Sum_probs=84.0
Q ss_pred cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEE
Q 048511 113 HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILA 192 (351)
Q Consensus 113 h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 192 (351)
-...+..+..+ +++.+ +++++......-||.-. ..+....+ .....|..+.|.|++...++
T Consensus 143 ~~gs~~~~~r~------~dG~~------vavs~~G~~~~s~~~G~--~~w~~~~r-----~~~~riq~~gf~~~~~lw~~ 203 (302)
T PF14870_consen 143 TSGSINDITRS------SDGRY------VAVSSRGNFYSSWDPGQ--TTWQPHNR-----NSSRRIQSMGFSPDGNLWML 203 (302)
T ss_dssp ----EEEEEE-------TTS-E------EEEETTSSEEEEE-TT---SS-EEEE-------SSS-EEEEEE-TTS-EEEE
T ss_pred CcceeEeEEEC------CCCcE------EEEECcccEEEEecCCC--ccceEEcc-----CccceehhceecCCCCEEEE
Confidence 34567888888 78988 88887777777888654 33333322 34567999999999876564
Q ss_pred EeeCCeEEEEEcccCcccCcc-cccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccc
Q 048511 193 HGYGGAFHLWRNVGVDIDNWQ-PQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQ 271 (351)
Q Consensus 193 ~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 271 (351)
+ ..|.|++=+..... ..+. ....+....-.+..++|.+++...++|+ .|.+ +.....++ +|+......
T Consensus 204 ~-~Gg~~~~s~~~~~~-~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGk-------tW~~~~~~~ 272 (302)
T PF14870_consen 204 A-RGGQIQFSDDPDDG-ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGK-------TWQKDRVGE 272 (302)
T ss_dssp E-TTTEEEEEE-TTEE-EEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTS-------S-EE-GGGT
T ss_pred e-CCcEEEEccCCCCc-cccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCc-------cceECcccc
Confidence 4 88888887721111 0011 1222222334589999999988777665 4544 33445554 788776554
Q ss_pred ccccceeEEEEeeeCCCcEEEEecCCCeEEEE
Q 048511 272 VHGHDINCVTIIQGKGNHRFVSGADEKVARVF 303 (351)
Q Consensus 272 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw 303 (351)
.-...++.+.|.+ +.+-+ +-+.+|.|.-|
T Consensus 273 ~~~~n~~~i~f~~--~~~gf-~lG~~G~ll~~ 301 (302)
T PF14870_consen 273 NVPSNLYRIVFVN--PDKGF-VLGQDGVLLRY 301 (302)
T ss_dssp TSSS---EEEEEE--TTEEE-EE-STTEEEEE
T ss_pred CCCCceEEEEEcC--CCceE-EECCCcEEEEe
Confidence 4455689999987 44444 44577777554
No 363
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.027 Score=49.65 Aligned_cols=140 Identities=9% Similarity=0.047 Sum_probs=90.3
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCC-------EEEEEeeCCeEEEEEcccCcccCcc
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR-------SILAHGYGGAFHLWRNVGVDIDNWQ 213 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-------~l~~~~~dg~i~~~d~~~~~~~~~~ 213 (351)
|.++..-..++-.|++. |+.+....+. . .|.-+.+.|+.+ .-+.|-.+..|.-||.+-....
T Consensus 349 l~~~~~~~~l~klDIE~--GKIVeEWk~~-----~-di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~--- 417 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIER--GKIVEEWKFE-----D-DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN--- 417 (644)
T ss_pred eeCCCCcCcceeeeccc--ceeeeEeecc-----C-CcceeeccCCcchhcccccccEEeecCCceEEecccccCcc---
Confidence 55566666788888888 8888777632 2 266666777543 2245667888999999754321
Q ss_pred cccccccc----cccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCc
Q 048511 214 PQKVPSGH----FAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNH 289 (351)
Q Consensus 214 ~~~~~~~~----~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 289 (351)
.+...++| .....|.+-..+| ++++||.+|.||+||.-... ....+.+-+.+|..+..+. +|.
T Consensus 418 kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~----------AKTAlPgLG~~I~hVdvta--dGK 484 (644)
T KOG2395|consen 418 KLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRR----------AKTALPGLGDAIKHVDVTA--DGK 484 (644)
T ss_pred eeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhh----------hhhcccccCCceeeEEeec--cCc
Confidence 11122222 1234445544454 78999999999999973332 3334557788899999998 888
Q ss_pred EEEEecCCCeEEEEec
Q 048511 290 RFVSGADEKVARVFEA 305 (351)
Q Consensus 290 ~l~s~~~dg~v~vw~~ 305 (351)
+|++.+.. .+.+-++
T Consensus 485 wil~Tc~t-yLlLi~t 499 (644)
T KOG2395|consen 485 WILATCKT-YLLLIDT 499 (644)
T ss_pred EEEEeccc-EEEEEEE
Confidence 88766554 5555554
No 364
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.005 Score=58.51 Aligned_cols=103 Identities=14% Similarity=0.104 Sum_probs=73.8
Q ss_pred CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceE
Q 048511 186 DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWH 265 (351)
Q Consensus 186 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 265 (351)
.+..++.|+..|.+...|+.++- .+...-..-.++|++++|+.+|+.++.|-.+|.|.+||+...+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL----~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k---------- 163 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNL----GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK---------- 163 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhccc----chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc----------
Confidence 45678889999999999987751 2233333346789999999999999999999999999998876
Q ss_pred EeccccccccceeE---EEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 266 EVARPQVHGHDINC---VTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 266 ~~~~~~~~~~~i~~---~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
.+..+..|+.+.+. +.+.. ++..++++...|. +|.+.
T Consensus 164 ~l~~i~e~~ap~t~vi~v~~t~--~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 164 ILKVITEHGAPVTGVIFVGRTS--QNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ceeeeeecCCccceEEEEEEeC--CCcEEEEccCCCc--eEEEE
Confidence 33333444444333 33444 4667888888887 67643
No 365
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.91 E-value=0.23 Score=43.43 Aligned_cols=109 Identities=11% Similarity=0.150 Sum_probs=54.0
Q ss_pred EEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEE--cCCCCEEEEE-eeCCeEEEEEc-ccCccc-------
Q 048511 142 LSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHW--SPDGRSILAH-GYGGAFHLWRN-VGVDID------- 210 (351)
Q Consensus 142 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~--~~~~~~l~~~-~~dg~i~~~d~-~~~~~~------- 210 (351)
..+....++++||+.+ .+.++++.+.. .......+.| .|+..+-+++ ....+|..|-- ..++-.
T Consensus 216 ~~~~yG~~l~vWD~~~--r~~~Q~idLg~---~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~i 290 (461)
T PF05694_consen 216 EAGKYGHSLHVWDWST--RKLLQTIDLGE---EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDI 290 (461)
T ss_dssp HHH-S--EEEEEETTT--TEEEEEEES-T---TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE
T ss_pred hcccccCeEEEEECCC--CcEeeEEecCC---CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEEC
Confidence 3334467899999999 88888887543 1223445665 4445544333 34445554433 222100
Q ss_pred ------Cc---ccccccccccccEEEEEeecCCCEEEEEeC-CCcEEEEcCCCcc
Q 048511 211 ------NW---QPQKVPSGHFAAVMDISWSRSSDYLLSVSH-DQTTRVFAPWKNV 255 (351)
Q Consensus 211 ------~~---~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-dg~i~vwd~~~~~ 255 (351)
.+ ..++.+..-..-|+.|..|.|.++|...+. +|.|+.||+....
T Consensus 291 p~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 291 PAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp --EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred CCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 00 011122222456899999999999876664 8999999998765
No 366
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.83 E-value=0.2 Score=45.21 Aligned_cols=128 Identities=14% Similarity=0.207 Sum_probs=78.1
Q ss_pred cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCC---CcceEEEEEeccccccccc--eEEEEEcCCC
Q 048511 113 HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKT---TGIWMNVVTVGELSHSALG--FYGGHWSPDG 187 (351)
Q Consensus 113 h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~--i~~i~~~~~~ 187 (351)
.-.-|..+.|.|... .+.-- |++......|.+|.+... ..+++.... .++ ....+ -....|+|..
T Consensus 55 qFEhV~GlsW~P~~~--~~~pa------LLAVQHkkhVtVWqL~~s~~e~~K~l~sQt-cEi-~e~~pvLpQGCVWHPk~ 124 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCT--ADTPA------LLAVQHKKHVTVWQLCPSTTERNKLLMSQT-CEI-REPFPVLPQGCVWHPKK 124 (671)
T ss_pred ccceeeeeeecCccc--CCCCc------eEEEeccceEEEEEeccCccccccceeeee-eec-cCCcccCCCcccccCCC
Confidence 334589999997542 22222 555667788999998731 122222211 111 11111 2357899999
Q ss_pred CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe-CCCcEEEEcCCCc
Q 048511 188 RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS-HDQTTRVFAPWKN 254 (351)
Q Consensus 188 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-~dg~i~vwd~~~~ 254 (351)
..|++-.....-.+++++.... .....+ ...+.|.+.+|.+||+.|+.+- ..=.-++||-...
T Consensus 125 ~iL~VLT~~dvSV~~sV~~d~s---rVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 125 AILTVLTARDVSVLPSVHCDSS---RVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred ceEEEEecCceeEeeeeeeCCc---eEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 9888877776667777765431 222333 3567899999999999876653 3335688986544
No 367
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.79 E-value=0.12 Score=46.34 Aligned_cols=144 Identities=13% Similarity=0.004 Sum_probs=78.0
Q ss_pred cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEE
Q 048511 113 HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILA 192 (351)
Q Consensus 113 h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 192 (351)
..-....+.++ |++++ ++. ..||.-.|+.... ..... .+.-..++|.++++ +|+
T Consensus 31 ~~~~p~~ls~n------pngr~------v~V-~g~geY~iyt~~~--~r~k~----------~G~g~~~vw~~~n~-yAv 84 (443)
T PF04053_consen 31 CEIYPQSLSHN------PNGRF------VLV-CGDGEYEIYTALA--WRNKA----------FGSGLSFVWSSRNR-YAV 84 (443)
T ss_dssp -SS--SEEEE-------TTSSE------EEE-EETTEEEEEETTT--TEEEE----------EEE-SEEEE-TSSE-EEE
T ss_pred CCcCCeeEEEC------CCCCE------EEE-EcCCEEEEEEccC--Ccccc----------cCceeEEEEecCcc-EEE
Confidence 34457789999 67887 666 5677777877433 11111 12345688988544 666
Q ss_pred EeeCCeEEEE-EcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccc
Q 048511 193 HGYGGAFHLW-RNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQ 271 (351)
Q Consensus 193 ~~~dg~i~~~-d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 271 (351)
-...+.|.++ ++... ....+... ..+..+-. |.+|...+.+ .|.+||+.+++ .+.+..
T Consensus 85 ~~~~~~I~I~kn~~~~------~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~----------~i~~i~ 143 (443)
T PF04053_consen 85 LESSSTIKIYKNFKNE------VVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGK----------LIRRID 143 (443)
T ss_dssp E-TTS-EEEEETTEE-------TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT------------EEEEES
T ss_pred EECCCeEEEEEcCccc------cceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcc----------eeeEEe
Confidence 6668889996 33332 22233221 23444433 7877776644 89999998887 555544
Q ss_pred ccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCch
Q 048511 272 VHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLS 308 (351)
Q Consensus 272 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 308 (351)
.. +|..+.|++ ++.+++-.+.+ .+.|++.+..
T Consensus 144 v~--~vk~V~Ws~--~g~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 144 VS--AVKYVIWSD--DGELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp S---E-EEEEE-T--TSSEEEEE-S--SEEEEEE-HH
T ss_pred cC--CCcEEEEEC--CCCEEEEEeCC-eEEEEEecch
Confidence 33 389999999 89999888766 6678776644
No 368
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.78 E-value=0.0039 Score=36.00 Aligned_cols=34 Identities=9% Similarity=0.177 Sum_probs=29.8
Q ss_pred ccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchh
Q 048511 274 GHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSF 309 (351)
Q Consensus 274 ~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~ 309 (351)
...|.+++|+| ...+||.+..||.|.++.++++.
T Consensus 11 ~~~v~~~~w~P--~mdLiA~~t~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCP--TMDLIALGTEDGEVLVYRLNWQR 44 (47)
T ss_pred CCcEEEEEECC--CCCEEEEEECCCeEEEEECCCcC
Confidence 34599999999 89999999999999999987544
No 369
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.74 E-value=0.15 Score=46.85 Aligned_cols=74 Identities=14% Similarity=0.081 Sum_probs=52.0
Q ss_pred ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc----------ceEEEEEeccccccccceEEEEEcC
Q 048511 116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG----------IWMNVVTVGELSHSALGFYGGHWSP 185 (351)
Q Consensus 116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----------~~~~~~~~~~~~~~~~~i~~i~~~~ 185 (351)
....+.++ |||++ +++++..+.+|.|.|+...+. ....... -...-...+|++
T Consensus 322 sPHGV~vS------PDGky-----lyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve------vGlGPLHTaFDg 384 (635)
T PRK02888 322 NPHGVNTS------PDGKY-----FIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE------LGLGPLHTAFDG 384 (635)
T ss_pred CccceEEC------CCCCE-----EEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec------cCCCcceEEECC
Confidence 45678888 78887 244455599999999987321 0122222 123345778999
Q ss_pred CCCEEEEEeeCCeEEEEEccc
Q 048511 186 DGRSILAHGYGGAFHLWRNVG 206 (351)
Q Consensus 186 ~~~~l~~~~~dg~i~~~d~~~ 206 (351)
+|+...+-..|..|..||+..
T Consensus 385 ~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 385 RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCEEEeEeecceeEEEehHH
Confidence 999888888999999999976
No 370
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.71 E-value=0.29 Score=40.99 Aligned_cols=239 Identities=13% Similarity=0.059 Sum_probs=120.0
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK 81 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~ 81 (351)
|+.+| |.+++.....+...+ . +...|..|... ++-+.|+.-+ |+.+.++++..............
T Consensus 13 Gt~~G-l~~~~~~~~~~~~~i--~--~~~~I~ql~vl--------~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~- 77 (275)
T PF00780_consen 13 GTEDG-LYVYDLSDPSKPTRI--L--KLSSITQLSVL--------PELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF- 77 (275)
T ss_pred EECCC-EEEEEecCCccceeE--e--ecceEEEEEEe--------cccCEEEEEc-CCccEEEEchhhccccccccccc-
Confidence 66777 899998331322222 2 23349999998 6566666665 59999999976544321110000
Q ss_pred ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc-
Q 048511 82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG- 160 (351)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~- 160 (351)
+.+. ...........+...+.... ..+.. .+.....+.|.+|.......
T Consensus 78 --------~~~~------------~~~~~~~~~~~v~~f~~~~~----~~~~~------~L~va~kk~i~i~~~~~~~~~ 127 (275)
T PF00780_consen 78 --------PKSR------------SLPTKLPETKGVSFFAVNGG----HEGSR------RLCVAVKKKILIYEWNDPRNS 127 (275)
T ss_pred --------cccc------------cccccccccCCeeEEeeccc----cccce------EEEEEECCEEEEEEEECCccc
Confidence 0000 00000112223444431100 23333 44444556899999876311
Q ss_pred --ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc----------ccccEEEE
Q 048511 161 --IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG----------HFAAVMDI 228 (351)
Q Consensus 161 --~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~----------~~~~v~~v 228 (351)
...+.+. -...+.+++|. ++.++.+..++ ..+.|+.++... .+..... ...++..+
T Consensus 128 f~~~~ke~~------lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~ 195 (275)
T PF00780_consen 128 FSKLLKEIS------LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPS---ELLDPSDSSSSFKSRNSSSKPLGIF 195 (275)
T ss_pred ccceeEEEE------cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCce---EEeCccCCcchhhhcccCCCceEEE
Confidence 2334443 23568888987 55677666544 788899865431 1111111 11233333
Q ss_pred EeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-c
Q 048511 229 SWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-L 307 (351)
Q Consensus 229 ~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~ 307 (351)
.. +++.+|++- |..-.+.|...... + -..+.- ...+..+++.. .+|++.+.+ .|.||++. +
T Consensus 196 ~~-~~~e~Ll~~--~~~g~fv~~~G~~~-----r----~~~i~W-~~~p~~~~~~~----pyli~~~~~-~iEV~~~~~~ 257 (275)
T PF00780_consen 196 QL-SDNEFLLCY--DNIGVFVNKNGEPS-----R----KSTIQW-SSAPQSVAYSS----PYLIAFSSN-SIEVRSLETG 257 (275)
T ss_pred Ee-CCceEEEEe--cceEEEEcCCCCcC-----c----ccEEEc-CCchhEEEEEC----CEEEEECCC-EEEEEECcCC
Confidence 33 345666643 33333444432220 0 011111 12356777754 466666554 59999987 7
Q ss_pred hhhhceee
Q 048511 308 SFLKTLNH 315 (351)
Q Consensus 308 ~~~~~~~~ 315 (351)
+.++++..
T Consensus 258 ~lvQ~i~~ 265 (275)
T PF00780_consen 258 ELVQTIPL 265 (275)
T ss_pred cEEEEEEC
Confidence 77776653
No 371
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.67 E-value=0.4 Score=42.03 Aligned_cols=183 Identities=14% Similarity=0.113 Sum_probs=77.1
Q ss_pred CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe--------------------eCCeEEEEEcccC
Q 048511 148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG--------------------YGGAFHLWRNVGV 207 (351)
Q Consensus 148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--------------------~dg~i~~~d~~~~ 207 (351)
|-+.+.|-++ -......... ......-+.+-|.|..+.++++. ...++.+||+.+.
T Consensus 157 Ggf~llD~~t--f~v~g~We~~--~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r 232 (461)
T PF05694_consen 157 GGFVLLDGET--FEVKGRWEKD--RGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR 232 (461)
T ss_dssp -EEEEE-TTT----EEEE--SB---TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT
T ss_pred CcEEEEcCcc--ccccceeccC--CCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC
Confidence 3466666654 3333322211 12233456778888888887753 3578999999987
Q ss_pred cccCccccccccccc--ccEEEEEeec--CCCE-EEEEeCCCcEEEEcC-CCccccccCccceEE--eccc---------
Q 048511 208 DIDNWQPQKVPSGHF--AAVMDISWSR--SSDY-LLSVSHDQTTRVFAP-WKNVASLMGENSWHE--VARP--------- 270 (351)
Q Consensus 208 ~~~~~~~~~~~~~~~--~~v~~v~~sp--~~~~-l~s~~~dg~i~vwd~-~~~~~~~~~~~~~~~--~~~~--------- 270 (351)
++++++.--. ..+..|.|.. +..+ ++.+.-..+|..|-- ..+ .|.. +...
T Consensus 233 -----~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g--------~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 233 -----KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDG--------EWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp -----EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETT--------EEEEEEEEEE--EE--SS-
T ss_pred -----cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCC--------CeeeeEEEECCCcccCccc
Confidence 4455554332 2355666654 4444 444444555555543 222 2221 1110
Q ss_pred --------cccccceeEEEEeeeCCCcEE-EEecCCCeEEEEecCchhhhceee--ccccccchhhh---hHHhHHhhcc
Q 048511 271 --------QVHGHDINCVTIIQGKGNHRF-VSGADEKVARVFEAPLSFLKTLNH--ATFQESSFHED---LQADVQILGA 336 (351)
Q Consensus 271 --------~~~~~~i~~~~~~~~~~~~~l-~s~~~dg~v~vw~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~ 336 (351)
..-..-|+.+.++. |.++| ++.-.+|.||.||++...--.+.+ ..+-...+.+. ....+.. |.
T Consensus 300 lp~ml~~~~~~P~LitDI~iSl--DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~G-gP 376 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISL--DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRG-GP 376 (461)
T ss_dssp --GGGGGG-EE------EEE-T--TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S---
T ss_pred ccccccccccCCCceEeEEEcc--CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCC-CC
Confidence 00122378999988 66655 566689999999987322222222 22222211111 0123455 78
Q ss_pred eeeeccCCCCCeee
Q 048511 337 NMSALGLSQKPIYV 350 (351)
Q Consensus 337 ~~~~~~~~~~~~~~ 350 (351)
.|-+|.|..|.+|.
T Consensus 377 qMvqlS~DGkRlYv 390 (461)
T PF05694_consen 377 QMVQLSLDGKRLYV 390 (461)
T ss_dssp --EEE-TTSSEEEE
T ss_pred CeEEEccCCeEEEE
Confidence 89999999999996
No 372
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.64 E-value=0.13 Score=48.00 Aligned_cols=154 Identities=11% Similarity=0.063 Sum_probs=82.9
Q ss_pred cceEEEEecCCCCCCCCCcccCCCceeEEee------cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCC
Q 048511 115 DWVYSVQWEPPSTAPSDGVSCQQPSSILSAS------MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR 188 (351)
Q Consensus 115 ~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 188 (351)
..+...+++ ++++. ++... .|..-.||=.... +.. ..+. .+. ....-.|+|+|.
T Consensus 350 ~~vsspaiS------pdG~~------vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt----~g~--~~t~PsWspDG~ 409 (591)
T PRK13616 350 GNITSAALS------RSGRQ------VAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVL----EGH--SLTRPSWSLDAD 409 (591)
T ss_pred cCcccceEC------CCCCE------EEEEEeecCCCCCcceEEEEEeCC-Ccc-eeee----cCC--CCCCceECCCCC
Confidence 356788888 67776 66554 2443344433321 222 2222 111 367789999988
Q ss_pred EEEEEeeC------------CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEE---EcCCC
Q 048511 189 SILAHGYG------------GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRV---FAPWK 253 (351)
Q Consensus 189 ~l~~~~~d------------g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~v---wd~~~ 253 (351)
.+++.... +.+.+.+++.+. ... ...+.|..+.|||||..++... ++.|++ -....
T Consensus 410 ~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge-----~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~ 480 (591)
T PRK13616 410 AVWVVVDGNTVVRVIRDPATGQLARTPVDASA-----VAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTED 480 (591)
T ss_pred ceEEEecCcceEEEeccCCCceEEEEeccCch-----hhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCC
Confidence 77766432 233333444332 111 2345799999999999887765 577777 33233
Q ss_pred ccccccCccceEEeccc-cccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 254 NVASLMGENSWHEVARP-QVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 254 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
+.. .......+ ..-...+..+.|.. ++.++ .+..++...+|.++
T Consensus 481 G~~------~l~~~~~l~~~l~~~~~~l~W~~--~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 481 GQY------ALTNPREVGPGLGDTAVSLDWRT--GDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred Cce------eecccEEeecccCCccccceEec--CCEEE-EEecCCCCceEEEe
Confidence 320 11111111 11223357899998 67654 55555545556543
No 373
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.49 Score=41.79 Aligned_cols=159 Identities=11% Similarity=0.090 Sum_probs=98.1
Q ss_pred ceEEEEecCCCCCCCCCcccCCCceeEEeec---CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEE
Q 048511 116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASM---DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILA 192 (351)
Q Consensus 116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 192 (351)
....+++. ++++. +..+.. ++++.+.|..+ ........... .+ ..++++|+++.+++
T Consensus 117 ~P~~~~~~------~~~~~------vYV~n~~~~~~~vsvid~~t--~~~~~~~~vG~-----~P-~~~a~~p~g~~vyv 176 (381)
T COG3391 117 GPVGLAVD------PDGKY------VYVANAGNGNNTVSVIDAAT--NKVTATIPVGN-----TP-TGVAVDPDGNKVYV 176 (381)
T ss_pred CCceEEEC------CCCCE------EEEEecccCCceEEEEeCCC--CeEEEEEecCC-----Cc-ceEEECCCCCeEEE
Confidence 45577888 56655 444443 68888888887 66666654322 23 78999999997776
Q ss_pred Ee-eCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCC---CcEEEEcCCCccccccCccceEEec
Q 048511 193 HG-YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD---QTTRVFAPWKNVASLMGENSWHEVA 268 (351)
Q Consensus 193 ~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~ 268 (351)
.. .++.|.++|..+..... ........-......+.++|++.++...... +.+...|..++... . . .
T Consensus 177 ~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~------~-~-~ 247 (381)
T COG3391 177 TNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVT------A-T-D 247 (381)
T ss_pred EecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEE------E-e-c
Confidence 66 67999999977653211 0000011222344678999999976555443 58888888777521 0 1 0
Q ss_pred cccccccceeEEEEeeeCCCcEEEEec-CCCeEEEEecC
Q 048511 269 RPQVHGHDINCVTIIQGKGNHRFVSGA-DEKVARVFEAP 306 (351)
Q Consensus 269 ~~~~~~~~i~~~~~~~~~~~~~l~s~~-~dg~v~vw~~~ 306 (351)
...... ....+..+| ++..+.+.. ..+.+.+-|..
T Consensus 248 ~~~~~~-~~~~v~~~p--~g~~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 248 LPVGSG-APRGVAVDP--AGKAAYVANSQGGTVSVIDGA 283 (381)
T ss_pred cccccC-CCCceeECC--CCCEEEEEecCCCeEEEEeCC
Confidence 111111 345677888 777776663 45778888765
No 374
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.48 E-value=0.23 Score=46.10 Aligned_cols=106 Identities=22% Similarity=0.426 Sum_probs=68.8
Q ss_pred eEEee-cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEc--CCCCEEEEEeeCCeEEEEEcc----cCcccCcc
Q 048511 141 ILSAS-MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWS--PDGRSILAHGYGGAFHLWRNV----GVDIDNWQ 213 (351)
Q Consensus 141 l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~--~~~~~l~~~~~dg~i~~~d~~----~~~~~~~~ 213 (351)
++... ....+.|||.+. +.......+ .....|..+.|. |+++.+++.+..+.|.+|--. +.....|.
T Consensus 43 ~a~V~~~~~~LtIWD~~~--~~lE~~~~f----~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~ 116 (631)
T PF12234_consen 43 IAVVDSSRSELTIWDTRS--GVLEYEESF----SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWA 116 (631)
T ss_pred EEEEECCCCEEEEEEcCC--cEEEEeeee----cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccc
Confidence 33333 345699999998 443322221 345679999985 688999999999999999652 22223344
Q ss_pred ccccc--cccc-ccEEEEEeecCCCEEEEEeCCCcEEEEcCCCc
Q 048511 214 PQKVP--SGHF-AAVMDISWSRSSDYLLSVSHDQTTRVFAPWKN 254 (351)
Q Consensus 214 ~~~~~--~~~~-~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~ 254 (351)
+++.+ ..++ .+|.+..|.++|.+++.+ ++.+.|+|-.-.
T Consensus 117 ~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~~~ 158 (631)
T PF12234_consen 117 PIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKWLD 158 (631)
T ss_pred eeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCCcC
Confidence 44433 2233 578999999999765544 457888875443
No 375
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.47 E-value=0.38 Score=39.37 Aligned_cols=198 Identities=12% Similarity=0.148 Sum_probs=107.1
Q ss_pred EEEEeeeecC--CceeEEEeeCCcccCCCCCccEEEEeeCCC--cEEEEecCCCcccceeecccccceeeeEeeecCCeE
Q 048511 20 VRACELKGHT--DWIRSLDFSLPVCTSGEAISILLVSSSQDK--VIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVL 95 (351)
Q Consensus 20 ~~~~~~~~h~--~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 95 (351)
..+.++. |. .-...+.|. .++.++-+.|.-| .|+.+|+.+++.......+.. ++
T Consensus 34 ~vv~~yp-Hd~~aFTQGL~~~--------~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-------------~F 91 (264)
T PF05096_consen 34 EVVETYP-HDPTAFTQGLEFL--------DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-------------YF 91 (264)
T ss_dssp EEEEEEE---TT-EEEEEEEE--------ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---------------
T ss_pred EEEEECC-CCCcccCccEEec--------CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-------------cc
Confidence 3344444 33 346778886 5677888887766 688999998875543332110 00
Q ss_pred EecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc
Q 048511 96 VAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA 175 (351)
Q Consensus 96 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 175 (351)
-.-+..+.+.+..+.|- ++...+||..+ -+.+.++.. .
T Consensus 92 -----------gEGit~~~d~l~qLTWk-----------------------~~~~f~yd~~t--l~~~~~~~y------~ 129 (264)
T PF05096_consen 92 -----------GEGITILGDKLYQLTWK-----------------------EGTGFVYDPNT--LKKIGTFPY------P 129 (264)
T ss_dssp -----------EEEEEEETTEEEEEESS-----------------------SSEEEEEETTT--TEEEEEEE-------S
T ss_pred -----------ceeEEEECCEEEEEEec-----------------------CCeEEEEcccc--ceEEEEEec------C
Confidence 00011123445555544 67788999988 666666652 1
Q ss_pred cceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccc-----cccEEEEEeecCCCEEEEEeCCCcEEEEc
Q 048511 176 LGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH-----FAAVMDISWSRSSDYLLSVSHDQTTRVFA 250 (351)
Q Consensus 176 ~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~-----~~~v~~v~~sp~~~~l~s~~~dg~i~vwd 250 (351)
..=+.++ .+++.|+.+.....|+++|..+-+ ...++.-. -..++.+.|. +|.+.|=.=....|..-|
T Consensus 130 ~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~-----~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Id 201 (264)
T PF05096_consen 130 GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFK-----EVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRID 201 (264)
T ss_dssp SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-S-----EEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred CcceEEE--cCCCEEEEECCccceEEECCcccc-----eEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEe
Confidence 2345666 467788888888899999987642 22222211 1245666765 454444443455666678
Q ss_pred CCCccccccCccceEEeccccc----------cccceeEEEEeeeCCCcEEEEec
Q 048511 251 PWKNVASLMGENSWHEVARPQV----------HGHDINCVTIIQGKGNHRFVSGA 295 (351)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~l~s~~ 295 (351)
..++.. ..+-.+..+.. ...-.+.+|+.| ..+.+++||-
T Consensus 202 p~tG~V-----~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~-~~~~l~vTGK 250 (264)
T PF05096_consen 202 PETGKV-----VGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDP-ETDRLFVTGK 250 (264)
T ss_dssp TTT-BE-----EEEEE-HHHHHHHTSTTST--TTS-EEEEEEET-TTTEEEEEET
T ss_pred CCCCeE-----EEEEEhhHhhhcccccccccccCCeeEeEeEeC-CCCEEEEEeC
Confidence 777762 22222221111 123489999998 4567778873
No 376
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.46 E-value=0.51 Score=42.11 Aligned_cols=112 Identities=18% Similarity=0.150 Sum_probs=62.1
Q ss_pred EEEecCCCCCCCCCcccCCCceeEEeecCCe--EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-e
Q 048511 119 SVQWEPPSTAPSDGVSCQQPSSILSASMDKT--MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-Y 195 (351)
Q Consensus 119 ~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~ 195 (351)
..+|+ |||+. ++++...|+. |.+.|+.. +... .+. .....-..-.|+|+|++++-.+ .
T Consensus 242 ~P~fs------pDG~~-----l~f~~~rdg~~~iy~~dl~~--~~~~-~Lt-----~~~gi~~~Ps~spdG~~ivf~Sdr 302 (425)
T COG0823 242 APAFS------PDGSK-----LAFSSSRDGSPDIYLMDLDG--KNLP-RLT-----NGFGINTSPSWSPDGSKIVFTSDR 302 (425)
T ss_pred CccCC------CCCCE-----EEEEECCCCCccEEEEcCCC--Ccce-ecc-----cCCccccCccCCCCCCEEEEEeCC
Confidence 45788 67766 2445555665 55556665 3321 111 1122222568999999776554 4
Q ss_pred CCe--EEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-CCc--EEEEcCCCcc
Q 048511 196 GGA--FHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-DQT--TRVFAPWKNV 255 (351)
Q Consensus 196 dg~--i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-dg~--i~vwd~~~~~ 255 (351)
.|. |.+++++.+. ...+....+.-..-.|+|||++|+..+. +|. |.+.|+.++.
T Consensus 303 ~G~p~I~~~~~~g~~------~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 303 GGRPQIYLYDLEGSQ------VTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CCCcceEEECCCCCc------eeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 454 5555666543 1222222222225679999999887664 344 6666665554
No 377
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.44 E-value=0.47 Score=40.08 Aligned_cols=113 Identities=14% Similarity=0.232 Sum_probs=61.3
Q ss_pred ccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCC
Q 048511 173 HSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPW 252 (351)
Q Consensus 173 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~ 252 (351)
.....+..+.-+++|++++++.......-||.-... +++.... ....|.+|.|.|++.+.+.+ ..|.|+.=+..
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~---w~~~~r~--~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~ 215 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT---WQPHNRN--SSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDP 215 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-T
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc---ceEEccC--ccceehhceecCCCCEEEEe-CCcEEEEccCC
Confidence 344678888889999999988777777777654321 2222222 35689999999998876654 78888887722
Q ss_pred CccccccCccceEEecc-ccccccceeEEEEeeeCCCcEEEEecCCCe
Q 048511 253 KNVASLMGENSWHEVAR-PQVHGHDINCVTIIQGKGNHRFVSGADEKV 299 (351)
Q Consensus 253 ~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~ 299 (351)
... ..|..... .......+..++|.+ ++...|+|+....
T Consensus 216 ~~~------~~w~~~~~~~~~~~~~~ld~a~~~--~~~~wa~gg~G~l 255 (302)
T PF14870_consen 216 DDG------ETWSEPIIPIKTNGYGILDLAYRP--PNEIWAVGGSGTL 255 (302)
T ss_dssp TEE------EEE---B-TTSS--S-EEEEEESS--SS-EEEEESTT-E
T ss_pred CCc------cccccccCCcccCceeeEEEEecC--CCCEEEEeCCccE
Confidence 221 24544222 223344588999998 6777776665533
No 378
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.43 E-value=0.011 Score=34.18 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=27.7
Q ss_pred cccEEEEEeecCCCEEEEEeCCCcEEEEcC
Q 048511 222 FAAVMDISWSRSSDYLLSVSHDQTTRVFAP 251 (351)
Q Consensus 222 ~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~ 251 (351)
...|..++|+|...+||.++.+|.|.++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 346899999999999999999999999998
No 379
>PHA03098 kelch-like protein; Provisional
Probab=96.40 E-value=0.5 Score=43.92 Aligned_cols=145 Identities=11% Similarity=0.158 Sum_probs=73.2
Q ss_pred eEEeecC-----CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC------CeEEEEEcccCcc
Q 048511 141 ILSASMD-----KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG------GAFHLWRNVGVDI 209 (351)
Q Consensus 141 l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------g~i~~~d~~~~~~ 209 (351)
++.|+.+ ..+..||+.+ ..+...-.+ ....... +++ .-+++.++.|+.+ ..+..||+.+.+
T Consensus 346 yv~GG~~~~~~~~~v~~yd~~~--~~W~~~~~l---p~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~- 417 (534)
T PHA03098 346 YVIGGIYNSISLNTVESWKPGE--SKWREEPPL---IFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNK- 417 (534)
T ss_pred EEEeCCCCCEecceEEEEcCCC--CceeeCCCc---CcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCe-
Confidence 6666654 3467788776 555432211 1111111 112 2356666666632 458889987754
Q ss_pred cCcccccccccccccEEEEEeecCCCEEEEEeCC--------CcEEEEcCCCccccccCccceEEeccccccccceeEEE
Q 048511 210 DNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD--------QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVT 281 (351)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 281 (351)
|..+..+....... ++ ...++.+++.|+.+ ..+.+||..+. .|..+.......... +++
T Consensus 418 --W~~~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~--------~W~~~~~~~~~r~~~-~~~ 484 (534)
T PHA03098 418 --WSKGSPLPISHYGG-CA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN--------KWTELSSLNFPRINA-SLC 484 (534)
T ss_pred --eeecCCCCccccCc-eE-EEECCEEEEECCccCCCCCcccceEEEecCCCC--------ceeeCCCCCcccccc-eEE
Confidence 33333222111111 12 22355666666643 23888888765 466665433222111 222
Q ss_pred EeeeCCCcEEEEecCC-----CeEEEEecCchh
Q 048511 282 IIQGKGNHRFVSGADE-----KVARVFEAPLSF 309 (351)
Q Consensus 282 ~~~~~~~~~l~s~~~d-----g~v~vw~~~~~~ 309 (351)
.. ++.+++.||.+ ..|.+||...+.
T Consensus 485 -~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 485 -IF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred -EE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 22 57788888764 467788876443
No 380
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.29 E-value=0.88 Score=41.70 Aligned_cols=103 Identities=9% Similarity=-0.024 Sum_probs=55.7
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEE------------------eeCCeEEEE
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAH------------------GYGGAFHLW 202 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~------------------~~dg~i~~~ 202 (351)
++.++.+|.+...|.++ ++.+-..... ...++.+| ..++.+ ..+|.+.-+
T Consensus 304 V~~g~~~G~l~ald~~t--G~~~W~~~~~--------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~Al 371 (488)
T cd00216 304 IVHAPKNGFFYVLDRTT--GKLISARPEV--------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAAL 371 (488)
T ss_pred EEEECCCceEEEEECCC--CcEeeEeEee--------ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEE
Confidence 77788899999999999 5554443321 01122233 222221 235677777
Q ss_pred EcccCcccCcccccccccc---cccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511 203 RNVGVDIDNWQPQKVPSGH---FAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 203 d~~~~~~~~~~~~~~~~~~---~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
|+.+++............. ......-...-.+..|+.++.||.|+.+|..+++
T Consensus 372 D~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~ 427 (488)
T cd00216 372 DPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGK 427 (488)
T ss_pred eCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCc
Confidence 8777653211111100000 0111100111245678888999999999999997
No 381
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.28 E-value=0.0062 Score=56.91 Aligned_cols=124 Identities=14% Similarity=0.099 Sum_probs=81.4
Q ss_pred ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC---C
Q 048511 110 LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP---D 186 (351)
Q Consensus 110 ~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~---~ 186 (351)
+++..+.|-.++|-. .+... ++ -.-|.+.+||+..-+|+....+.+.........+.-+.|.| +
T Consensus 128 ~kgf~G~v~dl~fah-----~~~pk------~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~ 194 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAH-----TKCPK------GR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVN 194 (1283)
T ss_pred HhcCCCCcccccccc-----cCChH------HH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccc
Confidence 556677788888763 11111 22 33467889998876666655555444334444556666665 5
Q ss_pred CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEE-----------EeecCCCEEEEEeCCCcEEEEcCC
Q 048511 187 GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDI-----------SWSRSSDYLLSVSHDQTTRVFAPW 252 (351)
Q Consensus 187 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v-----------~~sp~~~~l~s~~~dg~i~vwd~~ 252 (351)
..++..+-.++.+++...+... ...+.+|..++..+ ..+|||..|+.++.||.++.|.+.
T Consensus 195 ~~~ic~~~~~~~i~lL~~~ra~------~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 195 KVYICYGLKGGEIRLLNINRAL------RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred cceeeeccCCCceeEeeechHH------HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 5677777788999998887642 34455576655554 368999999999999998888764
No 382
>PHA02790 Kelch-like protein; Provisional
Probab=96.28 E-value=0.6 Score=42.69 Aligned_cols=140 Identities=11% Similarity=0.129 Sum_probs=73.6
Q ss_pred eEEeecC--CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCC---eEEEEEcccCcccCcccc
Q 048511 141 ILSASMD--KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGG---AFHLWRNVGVDIDNWQPQ 215 (351)
Q Consensus 141 l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~ 215 (351)
.+.|+.+ ..+..||... ..+...-. +.........+. -+++..+.|+.++ .+..||.++.. |...
T Consensus 322 YviGG~~~~~sve~ydp~~--n~W~~~~~---l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~---W~~~ 391 (480)
T PHA02790 322 YVVGGLPNPTSVERWFHGD--AAWVNMPS---LLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQ---WQFG 391 (480)
T ss_pred EEECCcCCCCceEEEECCC--CeEEECCC---CCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCE---EEeC
Confidence 6666653 3577788766 55543222 111111112222 3667777777553 46778887653 3333
Q ss_pred cccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEec
Q 048511 216 KVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGA 295 (351)
Q Consensus 216 ~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~ 295 (351)
..+.........+ .-++++.+.|+ .+.+||..+. .|..+..+....... +++.. ++.+.+.||
T Consensus 392 ~~m~~~r~~~~~~--~~~~~IYv~GG---~~e~ydp~~~--------~W~~~~~m~~~r~~~-~~~v~---~~~IYviGG 454 (480)
T PHA02790 392 PSTYYPHYKSCAL--VFGRRLFLVGR---NAEFYCESSN--------TWTLIDDPIYPRDNP-ELIIV---DNKLLLIGG 454 (480)
T ss_pred CCCCCccccceEE--EECCEEEEECC---ceEEecCCCC--------cEeEcCCCCCCcccc-EEEEE---CCEEEEECC
Confidence 3332222221222 33566666663 5778988654 587776553322222 33333 578888888
Q ss_pred CC-----CeEEEEecCc
Q 048511 296 DE-----KVARVFEAPL 307 (351)
Q Consensus 296 ~d-----g~v~vw~~~~ 307 (351)
.+ ..|.+||...
T Consensus 455 ~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 455 FYRGSYIDTIEVYNNRT 471 (480)
T ss_pred cCCCcccceEEEEECCC
Confidence 64 3566777653
No 383
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.28 E-value=0.77 Score=40.93 Aligned_cols=155 Identities=10% Similarity=0.045 Sum_probs=79.7
Q ss_pred cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccc----cccccceEEEEEcCCCCEE
Q 048511 115 DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGEL----SHSALGFYGGHWSPDGRSI 190 (351)
Q Consensus 115 ~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~i~~i~~~~~~~~l 190 (351)
+.+.++.|. .+. . |+....||.+++||+.. .. .+.+... ......+....+..+| +
T Consensus 81 ~~iv~~~wt------~~e-~------LvvV~~dG~v~vy~~~G---~~--~fsl~~~i~~~~v~e~~i~~~~~~~~G--i 140 (410)
T PF04841_consen 81 GRIVGMGWT------DDE-E------LVVVQSDGTVRVYDLFG---EF--QFSLGEEIEEEKVLECRIFAIWFYKNG--I 140 (410)
T ss_pred CCEEEEEEC------CCC-e------EEEEEcCCEEEEEeCCC---ce--eechhhhccccCcccccccccccCCCC--E
Confidence 689999999 443 3 77778999999999873 22 2222111 1111122223333345 3
Q ss_pred EEEeeCCeEEEEEcccCcccCccccccc-------ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccc
Q 048511 191 LAHGYGGAFHLWRNVGVDIDNWQPQKVP-------SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENS 263 (351)
Q Consensus 191 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~-------~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 263 (351)
+.-..++.+.+..-...... ....... ..+........++.+....+....++.+.+.+-....
T Consensus 141 vvLt~~~~~~~v~n~~~~~~-~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~-------- 211 (410)
T PF04841_consen 141 VVLTGNNRFYVVNNIDEPVK-LRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK-------- 211 (410)
T ss_pred EEECCCCeEEEEeCccccch-hhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc--------
Confidence 33334454444422221100 0000010 0111110112344455555555555666644322111
Q ss_pred eEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 264 WHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
. . ...+++..++++| +++++|.-..+|.+.|.+.+
T Consensus 212 --~---i-~~~~~i~~iavSp--ng~~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 212 --Q---I-DSDGPIIKIAVSP--NGKFIALFTDSGNLWVVSSD 246 (410)
T ss_pred --c---c-cCCCCeEEEEECC--CCCEEEEEECCCCEEEEECc
Confidence 1 1 1235699999999 89999999999999888765
No 384
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.24 E-value=0.015 Score=45.59 Aligned_cols=103 Identities=12% Similarity=0.019 Sum_probs=61.2
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEE-EEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYG-GHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS 219 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~-i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 219 (351)
++.|+.+|.|.+|..... +.....+. .....|.+ +.--.++.+..+++.+|.|+.|++.-.+ .+-...
T Consensus 73 ~~vG~~dg~v~~~n~n~~-g~~~d~~~-----s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k-----~~g~~g 141 (238)
T KOG2444|consen 73 LMVGTSDGAVYVFNWNLE-GAHSDRVC-----SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK-----VLGYVG 141 (238)
T ss_pred EEeecccceEEEecCCcc-chHHHhhh-----cccccceeccccccccceeEEeccCCceeeeccccCc-----eeeeec
Confidence 999999999999998731 22111111 11112222 3333355688999999999999987653 233333
Q ss_pred ccc-ccEEEEEeecCCCEEEEE--eCCCcEEEEcCCCc
Q 048511 220 GHF-AAVMDISWSRSSDYLLSV--SHDQTTRVFAPWKN 254 (351)
Q Consensus 220 ~~~-~~v~~v~~sp~~~~l~s~--~~dg~i~vwd~~~~ 254 (351)
.|. ..+.....+..++.++.+ |.|..++.|++..-
T Consensus 142 ~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 142 QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 344 344444445555666666 66777777776543
No 385
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.22 E-value=0.5 Score=38.19 Aligned_cols=64 Identities=19% Similarity=0.077 Sum_probs=41.4
Q ss_pred CCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEccc
Q 048511 130 SDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVG 206 (351)
Q Consensus 130 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~ 206 (351)
+++.+ +..|+.|++.+..|.++ ..++-..+ .......+-+..|....|+.+...|.+.--..+.
T Consensus 103 ~~~gl------Iycgshd~~~yalD~~~--~~cVyksk-----cgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 103 FDGGL------IYCGSHDGNFYALDPKT--YGCVYKSK-----CGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred CCCce------EEEecCCCcEEEecccc--cceEEecc-----cCCceeccceecCCCceEEEEeccceEEEEccCC
Confidence 56777 99999999999999998 55555443 2222233445666445566666667665554444
No 386
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=0.29 Score=43.58 Aligned_cols=104 Identities=13% Similarity=0.166 Sum_probs=67.3
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG 220 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 220 (351)
-+.|-.|+.|.-||++-.....+...+-.++. ......|++-..+ .++++|+.+|.|++||--.. .....+.+
T Consensus 397 TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~-~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~-----~AKTAlPg 469 (644)
T KOG2395|consen 397 TLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS-TKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGR-----RAKTALPG 469 (644)
T ss_pred cEEeecCCceEEecccccCcceeeeeeccccc-cccccceeeecCC-ceEEEeecCCcEEeehhhhh-----hhhhcccc
Confidence 35566788899999986322222222211111 1223445554433 47999999999999998332 33455677
Q ss_pred ccccEEEEEeecCCCEEEEEeCCCcEEEEcCC
Q 048511 221 HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPW 252 (351)
Q Consensus 221 ~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~ 252 (351)
-..+|..|..+.+|++|+..+ +..+.+-++.
T Consensus 470 LG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 470 LGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred cCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 788999999999999987554 5567676654
No 387
>PHA02790 Kelch-like protein; Provisional
Probab=96.10 E-value=0.47 Score=43.35 Aligned_cols=99 Identities=11% Similarity=0.025 Sum_probs=50.8
Q ss_pred eEEeecCC---eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccc
Q 048511 141 ILSASMDK---TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKV 217 (351)
Q Consensus 141 l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 217 (351)
.+.|+.++ .+..||.++ ..|...-.+ ....... +++ .-+++..+.| |.+.+||.++++ |..+..
T Consensus 366 YviGG~~~~~~~ve~ydp~~--~~W~~~~~m---~~~r~~~-~~~-~~~~~IYv~G---G~~e~ydp~~~~---W~~~~~ 432 (480)
T PHA02790 366 YVIGGHSETDTTTEYLLPNH--DQWQFGPST---YYPHYKS-CAL-VFGRRLFLVG---RNAEFYCESSNT---WTLIDD 432 (480)
T ss_pred EEecCcCCCCccEEEEeCCC--CEEEeCCCC---CCccccc-eEE-EECCEEEEEC---CceEEecCCCCc---EeEcCC
Confidence 66666543 466788877 555442221 1111111 121 2355555555 356788887654 444444
Q ss_pred cccccccEEEEEeecCCCEEEEEeCC-----CcEEEEcCCCc
Q 048511 218 PSGHFAAVMDISWSRSSDYLLSVSHD-----QTTRVFAPWKN 254 (351)
Q Consensus 218 ~~~~~~~v~~v~~sp~~~~l~s~~~d-----g~i~vwd~~~~ 254 (351)
+........ ++ .-++++.+.|+.+ ..+..||..+.
T Consensus 433 m~~~r~~~~-~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 433 PIYPRDNPE-LI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCCCccccE-EE-EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 432222222 22 2356777777754 35667776654
No 388
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.01 E-value=0.53 Score=43.76 Aligned_cols=120 Identities=12% Similarity=0.145 Sum_probs=74.0
Q ss_pred eEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEee--cCCCEEEEEeCCCcEEEEcCCCcc
Q 048511 178 FYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWS--RSSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 178 i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~s--p~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
+.-+.-+.-++..++-.....+.|||.+.+.. .....+ ...+.|.++.|. |+++.+++.+-...|.+|--....
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~l---E~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVL---EYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEE---EEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 34444455555555555567899999988742 222233 346789999886 588888888899999988542111
Q ss_pred ccccCccceEEeccc--cccc-cceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 256 ASLMGENSWHEVARP--QVHG-HDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 256 ~~~~~~~~~~~~~~~--~~~~-~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
... ....|..+... ..+. ++|.+..|.+ +|.++++. +..+.|++-.
T Consensus 108 y~~-~~p~w~~i~~i~i~~~T~h~Igds~Wl~--~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 108 YTN-KGPSWAPIRKIDISSHTPHPIGDSIWLK--DGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred hhc-CCcccceeEEEEeecCCCCCccceeEec--CCeEEEEe--CCEEEEECCC
Confidence 000 02344444332 2233 6799999998 67655544 4577888844
No 389
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.97 E-value=0.87 Score=38.77 Aligned_cols=226 Identities=10% Similarity=0.036 Sum_probs=111.1
Q ss_pred CceEEEEEccCCCceEEEEeeee-cCC----ceeEEEeeCCcccCCCCCccEEEEe--eCCCcEEEEecCCCcccceeec
Q 048511 5 DNKIHLYRGQRTGKFVRACELKG-HTD----WIRSLDFSLPVCTSGEAISILLVSS--SQDKVIRIWKLALRGSSANTQS 77 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~~~~~~-h~~----~V~~l~~~~~~~~~~~~~~~~l~t~--~~dg~i~iwd~~~~~~~~~~~~ 77 (351)
.-.|.+||..+ -....-..+.. |.. ....++++ .++++++.. +--..|.|-|+...+.+.++..
T Consensus 66 tDvv~~~D~~T-L~~~~EI~iP~k~R~~~~~~~~~~~ls--------~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~ 136 (342)
T PF06433_consen 66 TDVVEIWDTQT-LSPTGEIEIPPKPRAQVVPYKNMFALS--------ADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT 136 (342)
T ss_dssp EEEEEEEETTT-TEEEEEEEETTS-B--BS--GGGEEE---------TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG
T ss_pred eeEEEEEecCc-CcccceEecCCcchheecccccceEEc--------cCCcEEEEEccCCCCeEEEEECCCCceeeeecC
Confidence 34688999988 43333233332 111 22334555 566666654 2334577777777666555443
Q ss_pred ccccceeeeEeeecCCeEEecCCceeEEEEEe-ccccccceEEEEecCCCC----CC---CCCcccCCCceeEEeecCCe
Q 048511 78 TYRKEVISLASYIEGPVLVAGSSSYQVSVESL-LIGHEDWVYSVQWEPPST----AP---SDGVSCQQPSSILSASMDKT 149 (351)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~~----~~---~~~~~~~~~~~l~s~~~d~~ 149 (351)
+ .+..+....+.. +..-+.++.+..+.. -.|+......-.|.+... .. ..+.. ++--+..|.
T Consensus 137 P---GC~~iyP~~~~~-F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~------~~F~Sy~G~ 206 (342)
T PF06433_consen 137 P---GCWLIYPSGNRG-FSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGR------LYFVSYEGN 206 (342)
T ss_dssp T---SEEEEEEEETTE-EEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTE------EEEEBTTSE
T ss_pred C---CEEEEEecCCCc-eEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCe------EEEEecCCE
Confidence 2 222222233222 333223333222211 112211111112332110 00 12222 555678899
Q ss_pred EEEEeccCCCcceEEEEEeccccc-----cccceEEEEEcCCCCEEEEEee--------C--CeEEEEEcccCcccCccc
Q 048511 150 MMIWQPEKTTGIWMNVVTVGELSH-----SALGFYGGHWSPDGRSILAHGY--------G--GAFHLWRNVGVDIDNWQP 214 (351)
Q Consensus 150 i~iwd~~~~~~~~~~~~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~--------d--g~i~~~d~~~~~~~~~~~ 214 (351)
|+--|+....-.......+..... ..+...-+++++..+.|++-.. | ..|.+||+.+. +.
T Consensus 207 v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~-----kr 281 (342)
T PF06433_consen 207 VYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH-----KR 281 (342)
T ss_dssp EEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT-----EE
T ss_pred EEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC-----eE
Confidence 999888864333333333211000 1122335788876666655332 2 24778888776 44
Q ss_pred ccccccccccEEEEEeecCCC-EEEEE-eCCCcEEEEcCCCcc
Q 048511 215 QKVPSGHFAAVMDISWSRSSD-YLLSV-SHDQTTRVFAPWKNV 255 (351)
Q Consensus 215 ~~~~~~~~~~v~~v~~sp~~~-~l~s~-~~dg~i~vwd~~~~~ 255 (351)
+.++.. ..++.+|..+.+.+ +|++. ..++.+.+||..+++
T Consensus 282 v~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 282 VARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp EEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred EEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 666553 34678999998765 56544 458999999999987
No 390
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.96 E-value=0.76 Score=37.97 Aligned_cols=162 Identities=7% Similarity=0.006 Sum_probs=99.3
Q ss_pred eecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEE
Q 048511 26 KGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVS 105 (351)
Q Consensus 26 ~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 105 (351)
.+-...|.++.|+ |+.+.|++......-.||=..+++.+..+....-...-.+.+..+|++.++..++..+.
T Consensus 82 ~g~~~nvS~LTyn--------p~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~ 153 (316)
T COG3204 82 LGETANVSSLTYN--------PDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALY 153 (316)
T ss_pred ccccccccceeeC--------CCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEE
Confidence 4445669999999 77888888877777777766677777666655555666777777777777766555443
Q ss_pred EEEe------------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEE
Q 048511 106 VESL------------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVT 167 (351)
Q Consensus 106 ~~~~------------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 167 (351)
.... ....+.....++|. +.... |..+-.-+.+.||.+............
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d------~~~~~------l~~aKEr~P~~I~~~~~~~~~l~~~~~ 221 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWD------PVDHR------LFVAKERNPIGIFEVTQSPSSLSVHAS 221 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecC------CCCce------EEEEEccCCcEEEEEecCCcccccccc
Confidence 3221 11114556788999 45555 777777778888887642111100000
Q ss_pred ecc---ccccccceEEEEEcCC-CCEEEEEeeCCeEEEEEcccC
Q 048511 168 VGE---LSHSALGFYGGHWSPD-GRSILAHGYGGAFHLWRNVGV 207 (351)
Q Consensus 168 ~~~---~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~~~d~~~~ 207 (351)
... ..-.-..+.++.|++. +..++-+..++.+.-.|....
T Consensus 222 ~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 222 LDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 000 0001124667788874 456666667787777777654
No 391
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.94 E-value=0.22 Score=44.44 Aligned_cols=154 Identities=12% Similarity=0.102 Sum_probs=85.6
Q ss_pred ccceEEEEecCCCCCCCCCcccCCCceeEEee---cC-CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCE
Q 048511 114 EDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS---MD-KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRS 189 (351)
Q Consensus 114 ~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~---~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 189 (351)
...+..-+|+ +++.. ++..+ .. ..+.++|+.......+..+. + .-..-.|+|||+.
T Consensus 192 ~~~~~~p~ws------~~~~~------~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~-----g---~~~~P~fspDG~~ 251 (425)
T COG0823 192 GSLILTPAWS------PDGKK------LAYVSFELGGCPRIYYLDLNTGKRPVILNFN-----G---NNGAPAFSPDGSK 251 (425)
T ss_pred CcceeccccC------cCCCc------eEEEEEecCCCceEEEEeccCCccceeeccC-----C---ccCCccCCCCCCE
Confidence 3456667788 55554 44432 22 45889999884333332221 2 2334689999987
Q ss_pred EEEE-eeCCe--EEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-CCc--EEEEcCCCccccccCccc
Q 048511 190 ILAH-GYGGA--FHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-DQT--TRVFAPWKNVASLMGENS 263 (351)
Q Consensus 190 l~~~-~~dg~--i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-dg~--i~vwd~~~~~~~~~~~~~ 263 (351)
|+-+ ..||. |+++|+.++. ...+....+.-+.=.|+|||++++-.+. .|. |.+.+......
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~------~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~------- 318 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKN------LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV------- 318 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCc------ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-------
Confidence 7654 45554 6666776653 2223322222235579999999876554 454 55555554431
Q ss_pred eEEeccccccccceeEEEEeeeCCCcEEEEecC-CCe--EEEEecC
Q 048511 264 WHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD-EKV--ARVFEAP 306 (351)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-dg~--v~vw~~~ 306 (351)
..+ ......-..-.|+| ||.+|+..+. +|. |.+.++.
T Consensus 319 -~ri---T~~~~~~~~p~~Sp--dG~~i~~~~~~~g~~~i~~~~~~ 358 (425)
T COG0823 319 -TRL---TFSGGGNSNPVWSP--DGDKIVFESSSGGQWDIDKNDLA 358 (425)
T ss_pred -eEe---eccCCCCcCccCCC--CCCEEEEEeccCCceeeEEeccC
Confidence 111 11222222677888 8888886663 344 5555554
No 392
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.93 E-value=0.59 Score=38.39 Aligned_cols=98 Identities=16% Similarity=0.159 Sum_probs=65.6
Q ss_pred eEEeecCCe-EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-----CeEEEEEcccCcccCccc
Q 048511 141 ILSASMDKT-MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-----GAFHLWRNVGVDIDNWQP 214 (351)
Q Consensus 141 l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~ 214 (351)
++.+-.-|+ ..++|... .....++.- ....| ..-.-.|+|||.+|+..-.| |.|-|||.+.+ ++.
T Consensus 83 vafARrPGtf~~vfD~~~--~~~pv~~~s-~~~RH--fyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~----fqr 153 (366)
T COG3490 83 VAFARRPGTFAMVFDPNG--AQEPVTLVS-QEGRH--FYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG----FQR 153 (366)
T ss_pred EEEEecCCceEEEECCCC--CcCcEEEec-ccCce--eecccccCCCCcEEEeecCCCCCCCceEEEEecccc----cce
Confidence 555555554 56888887 333333321 01111 12235799999999876544 78999999865 466
Q ss_pred ccccccccccEEEEEeecCCCEEEEEeCCCcEEEE
Q 048511 215 QKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249 (351)
Q Consensus 215 ~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vw 249 (351)
+-.+..|.-....+.|.+||+.|+.+. |-|..-
T Consensus 154 vgE~~t~GiGpHev~lm~DGrtlvvan--GGIeth 186 (366)
T COG3490 154 VGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETH 186 (366)
T ss_pred ecccccCCcCcceeEEecCCcEEEEeC--Cceecc
Confidence 778888887788999999999988763 445544
No 393
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.91 E-value=1.2 Score=39.88 Aligned_cols=151 Identities=12% Similarity=0.059 Sum_probs=70.7
Q ss_pred eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC----CeEEEEEcccCcccCccccccccccccc
Q 048511 149 TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG----GAFHLWRNVGVDIDNWQPQKVPSGHFAA 224 (351)
Q Consensus 149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~~~~~~~~~ 224 (351)
.|+.|.+.+....-...+. . .........+..++++++++..... ..+.+.++....... .....+......
T Consensus 203 ~v~~~~~gt~~~~d~lvfe--~-~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~-~~~~~l~~~~~~ 278 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFE--E-PDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPD-AKPKLLSPREDG 278 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC----TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS--SEEEEEESSSS
T ss_pred EEEEEECCCChHhCeeEEe--e-cCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCc-CCcEEEeCCCCc
Confidence 3777777663222122222 1 1112236788999999988765543 357777776631000 112222222223
Q ss_pred E-EEEEeecCCCEEEEEe---CCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCC--
Q 048511 225 V-MDISWSRSSDYLLSVS---HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEK-- 298 (351)
Q Consensus 225 v-~~v~~sp~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg-- 298 (351)
+ ..+... ++.+++... .++.|.-.++..... ..|..+.........+..+... .+.+++..-.++
T Consensus 279 ~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~-----~~~~~~l~~~~~~~~l~~~~~~---~~~Lvl~~~~~~~~ 349 (414)
T PF02897_consen 279 VEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSP-----AEWWTVLIPEDEDVSLEDVSLF---KDYLVLSYRENGSS 349 (414)
T ss_dssp -EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSG-----GGEEEEEE--SSSEEEEEEEEE---TTEEEEEEEETTEE
T ss_pred eEEEEEcc-CCEEEEeeCCCCCCcEEEEeccccccc-----ccceeEEcCCCCceeEEEEEEE---CCEEEEEEEECCcc
Confidence 3 333333 444444332 246677777766651 2333222111122245555554 356666666666
Q ss_pred eEEEEecC-chhhhc
Q 048511 299 VARVFEAP-LSFLKT 312 (351)
Q Consensus 299 ~v~vw~~~-~~~~~~ 312 (351)
.|+++++. +.....
T Consensus 350 ~l~v~~~~~~~~~~~ 364 (414)
T PF02897_consen 350 RLRVYDLDDGKESRE 364 (414)
T ss_dssp EEEEEETT-TEEEEE
T ss_pred EEEEEECCCCcEEee
Confidence 57778877 444433
No 394
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.84 E-value=0.072 Score=51.17 Aligned_cols=74 Identities=20% Similarity=0.350 Sum_probs=54.2
Q ss_pred cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEE
Q 048511 113 HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILA 192 (351)
Q Consensus 113 h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 192 (351)
-.++|++++|+ .+|.. ++.|-.+|.|.+||+.. +...+.+.... .....+..+.+..++..+++
T Consensus 129 v~~~Vtsvafn------~dg~~------l~~G~~~G~V~v~D~~~--~k~l~~i~e~~--ap~t~vi~v~~t~~nS~llt 192 (1206)
T KOG2079|consen 129 VQGPVTSVAFN------QDGSL------LLAGLGDGHVTVWDMHR--AKILKVITEHG--APVTGVIFVGRTSQNSKLLT 192 (1206)
T ss_pred cCCcceeeEec------CCCce------eccccCCCcEEEEEccC--CcceeeeeecC--CccceEEEEEEeCCCcEEEE
Confidence 35789999999 89999 99999999999999998 66666555221 22234555555566667888
Q ss_pred EeeCCeEEEEEc
Q 048511 193 HGYGGAFHLWRN 204 (351)
Q Consensus 193 ~~~dg~i~~~d~ 204 (351)
+...|. +|.+
T Consensus 193 ~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 193 SDTGGS--FWKL 202 (1206)
T ss_pred ccCCCc--eEEE
Confidence 877776 5655
No 395
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.83 E-value=0.72 Score=36.74 Aligned_cols=141 Identities=14% Similarity=0.077 Sum_probs=78.4
Q ss_pred eeeeEeeecCCeEEecCCce-------eEEEEEeccccccc--------eEEEEecCCCCCCCCCcccCCCceeEEeecC
Q 048511 83 VISLASYIEGPVLVAGSSSY-------QVSVESLLIGHEDW--------VYSVQWEPPSTAPSDGVSCQQPSSILSASMD 147 (351)
Q Consensus 83 ~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~h~~~--------v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d 147 (351)
...-..+|+|+++.....+. ...+...+.+|.-. -+.++|. .+.+. +..+-+.+
T Consensus 111 ~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd------~d~K~-----fY~iDsln 179 (310)
T KOG4499|consen 111 LNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWD------SDAKK-----FYYIDSLN 179 (310)
T ss_pred cccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCcccccc------ccCcE-----EEEEccCc
Confidence 34455678888855422211 11233334444322 2456777 34333 15555667
Q ss_pred CeEEEEeccCCCcceEEE---EEeccccc-cccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccc
Q 048511 148 KTMMIWQPEKTTGIWMNV---VTVGELSH-SALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFA 223 (351)
Q Consensus 148 ~~i~iwd~~~~~~~~~~~---~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 223 (351)
-.|.-||..-..+..... +.+..... .....-.++...+|++.++.-..++|..+|..++ +.+.++.-...
T Consensus 180 ~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG-----K~L~eiklPt~ 254 (310)
T KOG4499|consen 180 YEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG-----KILLEIKLPTP 254 (310)
T ss_pred eEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCC-----cEEEEEEcCCC
Confidence 778778843322433221 11111111 1111234555678888888888899999999998 45777776788
Q ss_pred cEEEEEeec-CCCEEEE
Q 048511 224 AVMDISWSR-SSDYLLS 239 (351)
Q Consensus 224 ~v~~v~~sp-~~~~l~s 239 (351)
.|+++||-- +-..|++
T Consensus 255 qitsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 255 QITSCCFGGKNLDILYV 271 (310)
T ss_pred ceEEEEecCCCccEEEE
Confidence 899999963 2234443
No 396
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=1.8 Score=38.30 Aligned_cols=183 Identities=14% Similarity=0.107 Sum_probs=108.4
Q ss_pred CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC---CCcEEEEecCCCcccceeeccccc
Q 048511 5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ---DKVIRIWKLALRGSSANTQSTYRK 81 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~---dg~i~iwd~~~~~~~~~~~~~~~~ 81 (351)
++.|.+.|... .+. .-....+. ....++++ ++++.+..+.. ++++.+.|..+........
T Consensus 95 ~~~v~vid~~~-~~~-~~~~~vG~--~P~~~~~~--------~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~----- 157 (381)
T COG3391 95 SNTVSVIDTAT-NTV-LGSIPVGL--GPVGLAVD--------PDGKYVYVANAGNGNNTVSVIDAATNKVTATIP----- 157 (381)
T ss_pred CCeEEEEcCcc-cce-eeEeeecc--CCceEEEC--------CCCCEEEEEecccCCceEEEEeCCCCeEEEEEe-----
Confidence 46677777655 211 11111222 55678888 66766665544 6777777776655443311
Q ss_pred ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcc
Q 048511 82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGI 161 (351)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 161 (351)
.+ ..+ ..+++. ++++. .+++-..++.|.+.|... ..
T Consensus 158 -----------------------------vG-~~P-~~~a~~------p~g~~-----vyv~~~~~~~v~vi~~~~--~~ 193 (381)
T COG3391 158 -----------------------------VG-NTP-TGVAVD------PDGNK-----VYVTNSDDNTVSVIDTSG--NS 193 (381)
T ss_pred -----------------------------cC-CCc-ceEEEC------CCCCe-----EEEEecCCCeEEEEeCCC--cc
Confidence 11 123 778888 67775 044445788999999776 32
Q ss_pred eEEEEEeccccccccceEEEEEcCCCCEEEEEeeC---CeEEEEEcccCcccCcccccc-cc-cccccEEEEEeecCCCE
Q 048511 162 WMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG---GAFHLWRNVGVDIDNWQPQKV-PS-GHFAAVMDISWSRSSDY 236 (351)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~-~~-~~~~~v~~v~~sp~~~~ 236 (351)
... -...........-..+.++|+++++.+.... +.+...|..++.. ... .. +.. ....+..+|+|..
T Consensus 194 v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v-----~~~~~~~~~~-~~~~v~~~p~g~~ 266 (381)
T COG3391 194 VVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV-----TATDLPVGSG-APRGVAVDPAGKA 266 (381)
T ss_pred eec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE-----EEeccccccC-CCCceeECCCCCE
Confidence 221 0000001122234678999999977766554 4888888887632 221 11 111 4566889999999
Q ss_pred EEEEeC-CCcEEEEcCCCcc
Q 048511 237 LLSVSH-DQTTRVFAPWKNV 255 (351)
Q Consensus 237 l~s~~~-dg~i~vwd~~~~~ 255 (351)
+.+... .+.+.+-|..+..
T Consensus 267 ~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 267 AYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred EEEEecCCCeEEEEeCCCCc
Confidence 877744 4888888887765
No 397
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.33 E-value=1.3 Score=41.73 Aligned_cols=112 Identities=14% Similarity=0.060 Sum_probs=72.7
Q ss_pred CCCEEEEEeeCCeEEEEEcccCc---------c------cCcccccccccccccEEEEEee--cCCCEEEEEeCCCcEEE
Q 048511 186 DGRSILAHGYGGAFHLWRNVGVD---------I------DNWQPQKVPSGHFAAVMDISWS--RSSDYLLSVSHDQTTRV 248 (351)
Q Consensus 186 ~~~~l~~~~~dg~i~~~d~~~~~---------~------~~~~~~~~~~~~~~~v~~v~~s--p~~~~l~s~~~dg~i~v 248 (351)
+...|+.+..||.|.+|..+.-- . ...++...+. -....++++++ ...++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 45688899999999999763210 0 0011222222 23468899998 78888998888888888
Q ss_pred EcCCCccccccCccceEEeccccccccceeEEEEeeeC-C--C-cEEEEecCCCeEEEEec
Q 048511 249 FAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGK-G--N-HRFVSGADEKVARVFEA 305 (351)
Q Consensus 249 wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~--~-~~l~s~~~dg~v~vw~~ 305 (351)
|-+...... . .......+.+.|.+++|.+.. + | .+|++++-.|.+.+|++
T Consensus 192 Faf~l~~~r-----~--~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDER-----F--YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccc-----c--ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 876543210 0 111111366679999998832 1 2 27888999999999887
No 398
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.30 E-value=0.88 Score=42.87 Aligned_cols=109 Identities=10% Similarity=0.020 Sum_probs=70.3
Q ss_pred eEEeecCCeEEEEeccCC-----Cc----ce-E--EEEEeccccccccceEEEEEc--CCCCEEEEEeeCCeEEEEEccc
Q 048511 141 ILSASMDKTMMIWQPEKT-----TG----IW-M--NVVTVGELSHSALGFYGGHWS--PDGRSILAHGYGGAFHLWRNVG 206 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~-----~~----~~-~--~~~~~~~~~~~~~~i~~i~~~--~~~~~l~~~~~dg~i~~~d~~~ 206 (351)
|+.+..||.|.+|.++.- +. .. . ..++..........+++++++ ...++||+++....|.||-+..
T Consensus 117 Ll~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l 196 (717)
T PF08728_consen 117 LLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFAL 196 (717)
T ss_pred EEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEec
Confidence 999999999999987530 00 00 0 000000111234478999998 7888999999999888887654
Q ss_pred CcccCcccccccccccccEEEEEeecCC---C---EEEEEeCCCcEEEEcC
Q 048511 207 VDIDNWQPQKVPSGHFAAVMDISWSRSS---D---YLLSVSHDQTTRVFAP 251 (351)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~---~---~l~s~~~dg~i~vwd~ 251 (351)
...+ .....-..+...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 197 ~~~r--~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 197 VDER--FYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccc--cccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 2211 1111112256678999998753 2 6777888999999988
No 399
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.29 E-value=0.15 Score=49.44 Aligned_cols=138 Identities=12% Similarity=0.083 Sum_probs=81.9
Q ss_pred eEEeecCCeEEEEeccCCCcce---EEEEEecc-ccccccceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcccCcccc
Q 048511 141 ILSASMDKTMMIWQPEKTTGIW---MNVVTVGE-LSHSALGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDIDNWQPQ 215 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~---~~~~~~~~-~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~ 215 (351)
++..+.+-.|..||+++..... ...+.... .........++.|+|.-. ..++...|+.|++..+.... +.+
T Consensus 117 v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~----~~v 192 (1405)
T KOG3630|consen 117 VVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLA----QNV 192 (1405)
T ss_pred EEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhh----hhh
Confidence 3334445579999998632111 11111000 012223456778888543 45667788989888775432 122
Q ss_pred cccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccc-ccccceeEEEEeeeCCCcEEEE
Q 048511 216 KVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQ-VHGHDINCVTIIQGKGNHRFVS 293 (351)
Q Consensus 216 ~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~s 293 (351)
..+ ......++++|+|.|+.++.|-..|++.-|...-... ..+..+. ...+.|.|+.|.. ...+++.
T Consensus 193 ~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik--------~~ip~Pp~~e~yrvl~v~Wl~--t~eflvv 260 (1405)
T KOG3630|consen 193 TSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK--------SEIPEPPVEENYRVLSVTWLS--TQEFLVV 260 (1405)
T ss_pred ccc-CcccceeeEEeccccceeeEecCCCeEEEeeccccee--------ecccCCCcCCCcceeEEEEec--ceeEEEE
Confidence 222 2345689999999999999999999998887643320 1222221 2246799999988 5556554
No 400
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.20 E-value=1.4 Score=36.09 Aligned_cols=98 Identities=8% Similarity=0.059 Sum_probs=49.4
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccc---
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKV--- 217 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--- 217 (351)
|+.......++++|..+ -.....+.+......-..+.-+.|- +|...|=.-....|...|..++....+--+..
T Consensus 142 Li~SDGS~~L~~~dP~~--f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~ 218 (264)
T PF05096_consen 142 LIMSDGSSRLYFLDPET--FKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRP 218 (264)
T ss_dssp EEEE-SSSEEEEE-TTT---SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHH
T ss_pred EEEECCccceEEECCcc--cceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhh
Confidence 66666677899999887 5555555544332333345556664 45544544455666666666664211100000
Q ss_pred -------cccccccEEEEEeecCCCEEEEEe
Q 048511 218 -------PSGHFAAVMDISWSRSSDYLLSVS 241 (351)
Q Consensus 218 -------~~~~~~~v~~v~~sp~~~~l~s~~ 241 (351)
......-.+.|++.|..+.|...+
T Consensus 219 ~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 219 EVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp HHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred cccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 011135688999999776655444
No 401
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.12 E-value=0.88 Score=41.34 Aligned_cols=122 Identities=11% Similarity=0.125 Sum_probs=70.6
Q ss_pred ceEEEEEcCC----CCEEEEEeeCCeEEEEEcccCcccCccccccccc-cc----ccEEEEEeecCCCEEEEEeCCCcEE
Q 048511 177 GFYGGHWSPD----GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG-HF----AAVMDISWSRSSDYLLSVSHDQTTR 247 (351)
Q Consensus 177 ~i~~i~~~~~----~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-~~----~~v~~v~~sp~~~~l~s~~~dg~i~ 247 (351)
.|..+.|.|- -..+++.-....|.+|.+........+.+..-.. .. --..++.|+|....|+.-.....-.
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV 137 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSV 137 (671)
T ss_pred eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeE
Confidence 4889999984 3356666677889999985321111111111110 11 1124567999988887666554445
Q ss_pred EEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEE-EEecCCCeEEEEecCchh
Q 048511 248 VFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRF-VSGADEKVARVFEAPLSF 309 (351)
Q Consensus 248 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~dg~v~vw~~~~~~ 309 (351)
+++++.... +....+ ...+-|.|.+|.. ||+.| ++.+..=.-++||-..+.
T Consensus 138 ~~sV~~d~s--------rVkaDi-~~~G~IhCACWT~--DG~RLVVAvGSsLHSyiWd~~qKt 189 (671)
T PF15390_consen 138 LPSVHCDSS--------RVKADI-KTSGLIHCACWTK--DGQRLVVAVGSSLHSYIWDSAQKT 189 (671)
T ss_pred eeeeeeCCc--------eEEEec-cCCceEEEEEecC--cCCEEEEEeCCeEEEEEecCchhh
Confidence 666654441 011122 2334599999999 66655 455556677899965443
No 402
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.00 E-value=2.4 Score=37.64 Aligned_cols=59 Identities=10% Similarity=0.167 Sum_probs=41.3
Q ss_pred CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcC
Q 048511 187 GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAP 251 (351)
Q Consensus 187 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~ 251 (351)
...+.+-+.||.+.+|+-+.-- ....+.. .--...++|.+.-..|++++.+..+.-|..
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~-----f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFA-----FSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEE-----EEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 3578889999999999876631 1122221 222234788888888999998888888876
No 403
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.95 E-value=0.24 Score=48.21 Aligned_cols=127 Identities=9% Similarity=0.002 Sum_probs=80.7
Q ss_pred cceEEEEEcCCCCEEEEEee--CCeEEEEEcccCcccCcccccccc------cccccEEEEEeecCCCE-EEEEeCCCcE
Q 048511 176 LGFYGGHWSPDGRSILAHGY--GGAFHLWRNVGVDIDNWQPQKVPS------GHFAAVMDISWSRSSDY-LLSVSHDQTT 246 (351)
Q Consensus 176 ~~i~~i~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~------~~~~~v~~v~~sp~~~~-l~s~~~dg~i 246 (351)
..|..+...+|+...++... +-.|..||++.-....+....-+. .......++.|+|.-.. .+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 35566666777775555443 448999999764321111112122 12234567788886433 4566789999
Q ss_pred EEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhcee
Q 048511 247 RVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLN 314 (351)
Q Consensus 247 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 314 (351)
++..+..... .+..+ .-....+|++|+| .|..++.|-..|++.-|....+....+.
T Consensus 181 ~V~~~~~~~~---------~v~s~-p~t~~~Tav~WSp--rGKQl~iG~nnGt~vQy~P~leik~~ip 236 (1405)
T KOG3630|consen 181 RVKSTKQLAQ---------NVTSF-PVTNSQTAVLWSP--RGKQLFIGRNNGTEVQYEPSLEIKSEIP 236 (1405)
T ss_pred hhhhhhhhhh---------hhccc-CcccceeeEEecc--ccceeeEecCCCeEEEeecccceeeccc
Confidence 9988754431 12221 2345589999999 8999999999999999987766554443
No 404
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.75 E-value=1.2 Score=36.77 Aligned_cols=168 Identities=14% Similarity=0.154 Sum_probs=99.6
Q ss_pred CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC------------------CCcEEEEec
Q 048511 5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ------------------DKVIRIWKL 66 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~------------------dg~i~iwd~ 66 (351)
-|.|-|||... .+..+..+..|.-.-..|.+. +||+.|+.+.. .-++.+-|.
T Consensus 139 rGViGvYd~r~--~fqrvgE~~t~GiGpHev~lm--------~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~ 208 (366)
T COG3490 139 RGVIGVYDARE--GFQRVGEFSTHGIGPHEVTLM--------ADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDA 208 (366)
T ss_pred CceEEEEeccc--ccceecccccCCcCcceeEEe--------cCCcEEEEeCCceecccccCccccchhhcCccEEEEec
Confidence 46788999986 477888899998888899999 88999887742 012333443
Q ss_pred CCCcccceeecc---cccceeeeEeeecCCeEEecCCceeEEEEEecc--------------------ccccceEEEEec
Q 048511 67 ALRGSSANTQST---YRKEVISLASYIEGPVLVAGSSSYQVSVESLLI--------------------GHEDWVYSVQWE 123 (351)
Q Consensus 67 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------------------~h~~~v~~l~~~ 123 (351)
.+++.+.+...+ ....+..++...+|.+++.+.-.+.-.-...+. .....|-+++.+
T Consensus 209 atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n 288 (366)
T COG3490 209 ATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAAN 288 (366)
T ss_pred cccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeec
Confidence 444443333322 234566777788888777643222111000111 112235567766
Q ss_pred CCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEE
Q 048511 124 PPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWR 203 (351)
Q Consensus 124 p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d 203 (351)
. .++.. .+|+=..+...+||..+ +..+....+.+ ...+ -+...-+++.+.+|.+.++.
T Consensus 289 ~-----~~glV------~lTSP~GN~~vi~da~t--G~vv~~a~l~d-------aaGv--a~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 289 R-----RDGLV------ALTSPRGNRAVIWDAAT--GAVVSEAALPD-------AAGV--AAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred c-----cCCeE------EEecCCCCeEEEEEcCC--CcEEecccccc-------cccc--eeccCceEEecCCceEEecc
Confidence 2 33444 55555667788999999 76665444211 1122 23445577778888888874
Q ss_pred c
Q 048511 204 N 204 (351)
Q Consensus 204 ~ 204 (351)
-
T Consensus 347 ~ 347 (366)
T COG3490 347 R 347 (366)
T ss_pred c
Confidence 3
No 405
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.72 E-value=2.2 Score=35.68 Aligned_cols=154 Identities=7% Similarity=-0.021 Sum_probs=85.9
Q ss_pred CCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCC
Q 048511 47 AISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPS 126 (351)
Q Consensus 47 ~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 126 (351)
..++.|+.|..+| |.++++.......... +...|..+...
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~------------------------------------~~~~I~ql~vl--- 44 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL------------------------------------KLSSITQLSVL--- 44 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe------------------------------------ecceEEEEEEe---
Confidence 5678999999998 8888883222111111 22338888888
Q ss_pred CCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEE---EEe----ccccccccceEEEE--EcCCCCEEEEEeeCC
Q 048511 127 TAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNV---VTV----GELSHSALGFYGGH--WSPDGRSILAHGYGG 197 (351)
Q Consensus 127 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~----~~~~~~~~~i~~i~--~~~~~~~l~~~~~dg 197 (351)
++-+. |++- .|+.++++++.......... ... .........+...+ -...+...++.....
T Consensus 45 ---~~~~~------llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk 114 (275)
T PF00780_consen 45 ---PELNL------LLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK 114 (275)
T ss_pred ---cccCE------EEEE-cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECC
Confidence 44444 4443 45999999988622211100 000 00001122333333 123444555566666
Q ss_pred eEEEEEcccCcccCc-ccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511 198 AFHLWRNVGVDIDNW-QPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 198 ~i~~~d~~~~~~~~~-~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
+|.+|....... .+ ...+.+. -...+..++|. ++.|+.|..+ ...+.|+.++.
T Consensus 115 ~i~i~~~~~~~~-~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~ 168 (275)
T PF00780_consen 115 KILIYEWNDPRN-SFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGS 168 (275)
T ss_pred EEEEEEEECCcc-cccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCC
Confidence 999999876421 12 2334443 34678889998 4567777644 47788988665
No 406
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.62 E-value=1.5 Score=38.61 Aligned_cols=155 Identities=10% Similarity=0.049 Sum_probs=90.5
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG 220 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 220 (351)
.+-+-..|.+.-|-+..........+. ....++|.++.|++|.+.+|+--.+.+|.+++....+.. .....+.+.
T Consensus 36 qlfavrSggatgvvvkgpndDVpiSfd----m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~-l~~~~~ck~ 110 (657)
T KOG2377|consen 36 QLFAVRSGGATGVVVKGPNDDVPISFD----MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ-LEYTQECKT 110 (657)
T ss_pred eEEEEecCCeeEEEEeCCCCCCCceee----ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchh-hHHHHHhcc
Confidence 444445556667766653322222332 244568999999999999999999999999998443210 012223333
Q ss_pred ccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEE-Eec-CCC
Q 048511 221 HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFV-SGA-DEK 298 (351)
Q Consensus 221 ~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-s~~-~dg 298 (351)
....|.+.+|+.+.. +|..+ +.-+.+|-+.... +.+...+.|.-.|+-..|++ +...++ +.+ ...
T Consensus 111 k~~~IlGF~W~~s~e-~A~i~-~~G~e~y~v~pek---------rslRlVks~~~nvnWy~yc~--et~v~LL~t~~~~n 177 (657)
T KOG2377|consen 111 KNANILGFCWTSSTE-IAFIT-DQGIEFYQVLPEK---------RSLRLVKSHNLNVNWYMYCP--ETAVILLSTTVLEN 177 (657)
T ss_pred CcceeEEEEEecCee-EEEEe-cCCeEEEEEchhh---------hhhhhhhhcccCccEEEEcc--ccceEeeecccccc
Confidence 445689999997743 44443 3346677664443 23344445666788888888 444433 333 444
Q ss_pred eEEEEecCchhhhce
Q 048511 299 VARVFEAPLSFLKTL 313 (351)
Q Consensus 299 ~v~vw~~~~~~~~~~ 313 (351)
++.=+.++...+..+
T Consensus 178 ~lnpf~~~~~~v~kL 192 (657)
T KOG2377|consen 178 VLNPFHFRAGTMSKL 192 (657)
T ss_pred ccccEEEeeceeeec
Confidence 444444443333333
No 407
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.52 E-value=1.9 Score=37.97 Aligned_cols=152 Identities=11% Similarity=0.070 Sum_probs=76.7
Q ss_pred ceEEEEecCCCCCCCCCcccCCCceeEEee-----------cCC-eEEEEeccCCCcceEEEEEeccccccccceEEEEE
Q 048511 116 WVYSVQWEPPSTAPSDGVSCQQPSSILSAS-----------MDK-TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHW 183 (351)
Q Consensus 116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~-----------~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 183 (351)
....|+|. ++|++ +++-. ..+ .|.+++-....+..-....+. ..-.....+++
T Consensus 15 ~P~~ia~d------~~G~l------~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa---~~l~~p~Gi~~ 79 (367)
T TIGR02604 15 NPIAVCFD------ERGRL------WVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA---EELSMVTGLAV 79 (367)
T ss_pred CCceeeEC------CCCCE------EEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee---cCCCCccceeE
Confidence 45678888 67776 55532 223 677776554334322211111 12224577899
Q ss_pred cCCCCEEEEEeeCCeEEEEEcccCcccC--cc-ccccccc----ccccEEEEEeecCCCEEEEEeCC-------------
Q 048511 184 SPDGRSILAHGYGGAFHLWRNVGVDIDN--WQ-PQKVPSG----HFAAVMDISWSRSSDYLLSVSHD------------- 243 (351)
Q Consensus 184 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~-~~~~~~~----~~~~v~~v~~sp~~~~l~s~~~d------------- 243 (351)
.+++ |+++......++.|........ .+ .+..+.. +......++|.|||.+.++-+..
T Consensus 80 ~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~ 157 (367)
T TIGR02604 80 AVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDE 157 (367)
T ss_pred ecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccC
Confidence 8888 4444444433344543221100 01 1122222 13447789999999876655421
Q ss_pred ------CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC
Q 048511 244 ------QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE 297 (351)
Q Consensus 244 ------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d 297 (351)
+.|.-++..... ++.+. .+ ......++|++ +++++++-..+
T Consensus 158 ~~~~~~g~i~r~~pdg~~--------~e~~a--~G-~rnp~Gl~~d~--~G~l~~tdn~~ 204 (367)
T TIGR02604 158 SRQGLGGGLFRYNPDGGK--------LRVVA--HG-FQNPYGHSVDS--WGDVFFCDNDD 204 (367)
T ss_pred cccccCceEEEEecCCCe--------EEEEe--cC-cCCCccceECC--CCCEEEEccCC
Confidence 234444433322 11111 11 23367899998 78887765544
No 408
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.47 E-value=3.2 Score=36.92 Aligned_cols=150 Identities=11% Similarity=0.026 Sum_probs=84.6
Q ss_pred eeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEc---C-CCCEEEEEeeCCeEEEEEcccCccc----C
Q 048511 140 SILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWS---P-DGRSILAHGYGGAFHLWRNVGVDID----N 211 (351)
Q Consensus 140 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~---~-~~~~l~~~~~dg~i~~~d~~~~~~~----~ 211 (351)
.+++||..|.++||+....+......+.- ..-..+|..+..- + .....++.=.-..+.+|.+...... .
T Consensus 39 ~IivGS~~G~LrIy~P~~~~~~~~~lllE---~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 39 KIIVGSYSGILRIYDPSGNEFQPEDLLLE---TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred EEEEeccccEEEEEccCCCCCCCccEEEE---EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 39999999999999997633221111110 1233466666543 2 2233333456778889988432110 0
Q ss_pred ccccccccccc--ccEEEEEeec----C-CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEee
Q 048511 212 WQPQKVPSGHF--AAVMDISWSR----S-SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQ 284 (351)
Q Consensus 212 ~~~~~~~~~~~--~~v~~v~~sp----~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 284 (351)
...+..+..|. .....++.-| . ..+|+.-+.||.+.+|+-+.... -..+.. ... .-.+.+.+
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f-------~~~lp~-~ll---PgPl~Y~~ 184 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF-------SRFLPD-FLL---PGPLCYCP 184 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE-------EEEcCC-CCC---CcCeEEee
Confidence 00112222232 2233344444 1 35788889999999998754430 011111 122 34577888
Q ss_pred eCCCcEEEEecCCCeEEEEec
Q 048511 285 GKGNHRFVSGADEKVARVFEA 305 (351)
Q Consensus 285 ~~~~~~l~s~~~dg~v~vw~~ 305 (351)
..+.|++++.+..+..|+.
T Consensus 185 --~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 185 --RTDSFVTASSSWTLECYKY 203 (418)
T ss_pred --cCCEEEEecCceeEEEecH
Confidence 6788999999999988874
No 409
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.45 E-value=1.3 Score=42.44 Aligned_cols=36 Identities=17% Similarity=0.319 Sum_probs=29.9
Q ss_pred cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC
Q 048511 113 HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK 157 (351)
Q Consensus 113 h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 157 (351)
+...|..+.|+|.+ .++.. |+.-..|+++|+||+..
T Consensus 145 ~~~~i~qv~WhP~s---~~~~~------l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 145 SSLEIKQVRWHPWS---ESDSH------LVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCceEEEEEEcCCC---CCCCe------EEEEecCCEEEEEecCC
Confidence 45679999999866 45666 88889999999999975
No 410
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.31 E-value=0.16 Score=28.45 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=25.8
Q ss_pred cceEEEEecCCCCCCCCC--cccCCCceeEEeecCCeEEEEeccC
Q 048511 115 DWVYSVQWEPPSTAPSDG--VSCQQPSSILSASMDKTMMIWQPEK 157 (351)
Q Consensus 115 ~~v~~l~~~p~~~~~~~~--~~~~~~~~l~s~~~d~~i~iwd~~~ 157 (351)
+.|.+++|+| ..+ .+ |+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP-----~~~~~DL------L~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSP-----EPGGNDL------LAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCC-----CCCcccE------EEEEccCCeEEEEEccc
Confidence 3688999997 333 56 88888889999999995
No 411
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.27 E-value=0.17 Score=28.35 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=25.2
Q ss_pred ccEEEEEeecCC---CEEEEEeCCCcEEEEcCCC
Q 048511 223 AAVMDISWSRSS---DYLLSVSHDQTTRVFAPWK 253 (351)
Q Consensus 223 ~~v~~v~~sp~~---~~l~s~~~dg~i~vwd~~~ 253 (351)
+.|+++.|+|+. .+|+.+-..+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468899999854 4777777789999999985
No 412
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=94.10 E-value=2 Score=33.08 Aligned_cols=47 Identities=17% Similarity=0.404 Sum_probs=32.7
Q ss_pred cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCC-CcceEEEEE
Q 048511 115 DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKT-TGIWMNVVT 167 (351)
Q Consensus 115 ~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~ 167 (351)
..|..++|+|.+.. ++ .+-+|++...++.|.||..... .+++.....
T Consensus 86 ~~vv~~aWSP~Gl~-~~-----~rClLavLTs~~~l~l~~~~~~~~~~W~~v~d 133 (173)
T PF12657_consen 86 SQVVSAAWSPSGLG-PN-----GRCLLAVLTSNGRLSLYGPPGNPQGEWNRVAD 133 (173)
T ss_pred ccEEEEEECCCCCC-CC-----CceEEEEEcCCCeEEEEecCCCccccEeeeee
Confidence 37899999986643 22 2334899999999999998743 355555443
No 413
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.97 E-value=5.2 Score=37.10 Aligned_cols=23 Identities=9% Similarity=0.102 Sum_probs=19.5
Q ss_pred CCCEEEEEeCCCcEEEEcCCCcc
Q 048511 233 SSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 233 ~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
.+.+++.++.||.++.+|.++++
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe 493 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGE 493 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCC
Confidence 44567778889999999999998
No 414
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.85 E-value=4.5 Score=35.95 Aligned_cols=42 Identities=0% Similarity=-0.110 Sum_probs=35.0
Q ss_pred cceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeeccc
Q 048511 275 HDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATF 318 (351)
Q Consensus 275 ~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~ 318 (351)
..+.+++.+| ++.+.|+...=|+|.++|+. +..++.++++-+
T Consensus 308 R~~~~i~~sP--~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd 350 (415)
T PF14655_consen 308 REGESICLSP--SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD 350 (415)
T ss_pred ceEEEEEECC--CCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence 4488899999 88888888888999999987 888888887653
No 415
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.77 E-value=3.3 Score=34.18 Aligned_cols=153 Identities=14% Similarity=0.061 Sum_probs=83.7
Q ss_pred ceEEEEecCCCCCCCCCcccCCCceeEEee---cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEE
Q 048511 116 WVYSVQWEPPSTAPSDGVSCQQPSSILSAS---MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILA 192 (351)
Q Consensus 116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 192 (351)
.+.+.+++ ++++. ++... ....+.++.... . ..... ....+..-.|++++...+.
T Consensus 25 ~~~s~AvS------~dg~~------~A~v~~~~~~~~L~~~~~~~--~--~~~~~------~g~~l~~PS~d~~g~~W~v 82 (253)
T PF10647_consen 25 DVTSPAVS------PDGSR------VAAVSEGDGGRSLYVGPAGG--P--VRPVL------TGGSLTRPSWDPDGWVWTV 82 (253)
T ss_pred cccceEEC------CCCCe------EEEEEEcCCCCEEEEEcCCC--c--ceeec------cCCccccccccCCCCEEEE
Confidence 57788999 67776 65554 333455554332 1 11111 1225677789999776666
Q ss_pred EeeCCeEEEEE-cccCcccCcccc-cccccccccEEEEEeecCCCEEEEEe---CCCcEEEEcCCCcccc-ccCccceEE
Q 048511 193 HGYGGAFHLWR-NVGVDIDNWQPQ-KVPSGHFAAVMDISWSRSSDYLLSVS---HDQTTRVFAPWKNVAS-LMGENSWHE 266 (351)
Q Consensus 193 ~~~dg~i~~~d-~~~~~~~~~~~~-~~~~~~~~~v~~v~~sp~~~~l~s~~---~dg~i~vwd~~~~~~~-~~~~~~~~~ 266 (351)
...+...+++. ...+.. ..+ .....-...|.++.+||||..++... .++.|.|=-+.....- . ......
T Consensus 83 ~~~~~~~~~~~~~~~g~~---~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~--~~l~~~ 157 (253)
T PF10647_consen 83 DDGSGGVRVVRDSASGTG---EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVP--RRLTGP 157 (253)
T ss_pred EcCCCceEEEEecCCCcc---eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCc--ceeccc
Confidence 66666666663 222211 111 11111112899999999999877655 3577777665432211 0 001111
Q ss_pred eccccccccceeEEEEeeeCCCcEEEEecCC
Q 048511 267 VARPQVHGHDINCVTIIQGKGNHRFVSGADE 297 (351)
Q Consensus 267 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d 297 (351)
..........++.++|.+ ++.+++.+...
T Consensus 158 ~~~~~~~~~~v~~v~W~~--~~~L~V~~~~~ 186 (253)
T PF10647_consen 158 RRVAPPLLSDVTDVAWSD--DSTLVVLGRSA 186 (253)
T ss_pred eEecccccCcceeeeecC--CCEEEEEeCCC
Confidence 111212345689999998 77777665543
No 416
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.48 E-value=6.4 Score=36.53 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=22.6
Q ss_pred CCcEEEEecCCCeEEEEecC-chhhhceee
Q 048511 287 GNHRFVSGADEKVARVFEAP-LSFLKTLNH 315 (351)
Q Consensus 287 ~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~ 315 (351)
.+.+++.++.||.++.+|.. |+.+-.++-
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 35677788889999999987 877766543
No 417
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.46 E-value=0.45 Score=38.26 Aligned_cols=73 Identities=14% Similarity=0.135 Sum_probs=48.6
Q ss_pred eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccc-----cccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511 230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARP-----QVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE 304 (351)
Q Consensus 230 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~ 304 (351)
+..++++|++.+.+|.+++||+.+.+...... ...++-.. ......|..+.++. +|.-|++-+ +|..+.|+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~-Si~pll~~~~~~~~~~~~~i~~~~lt~--~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPV-SIAPLLNSSPVSDKSSSPNITSCSLTS--NGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCc-cHHHHhcccccccCCCCCcEEEEEEcC--CCCEEEEEe-CCCEEEec
Confidence 45578899999999999999999887432110 00011100 02445588888887 787777765 47789998
Q ss_pred cC
Q 048511 305 AP 306 (351)
Q Consensus 305 ~~ 306 (351)
.+
T Consensus 94 ~~ 95 (219)
T PF07569_consen 94 PD 95 (219)
T ss_pred cc
Confidence 77
No 418
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.46 E-value=3.2 Score=39.81 Aligned_cols=82 Identities=13% Similarity=0.127 Sum_probs=53.6
Q ss_pred cccceEEEEEcCCCCEEEEEeeCCeEEEEEccc-CcccCc-------cccc-----c--cccccccEEEEEeecC---CC
Q 048511 174 SALGFYGGHWSPDGRSILAHGYGGAFHLWRNVG-VDIDNW-------QPQK-----V--PSGHFAAVMDISWSRS---SD 235 (351)
Q Consensus 174 ~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~-------~~~~-----~--~~~~~~~v~~v~~sp~---~~ 235 (351)
....|..+.++|+|.+++..|..|...+.=.+. +....+ .|.. . ...+...|..+.|+|. +.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 345688999999999999988876444432221 100000 0000 0 1123457899999996 47
Q ss_pred EEEEEeCCCcEEEEcCCCcc
Q 048511 236 YLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 236 ~l~s~~~dg~i~vwd~~~~~ 255 (351)
.|+.-..|+++|+||+....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 88888899999999997544
No 419
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.29 E-value=1.2 Score=35.58 Aligned_cols=96 Identities=8% Similarity=0.046 Sum_probs=60.2
Q ss_pred EEEEEcCCCCEEE-EEeeCCeEEEEE--cccCcccCccccccccc----ccccEEEEEeecCCCEEEEEeCCCcEEEEcC
Q 048511 179 YGGHWSPDGRSIL-AHGYGGAFHLWR--NVGVDIDNWQPQKVPSG----HFAAVMDISWSRSSDYLLSVSHDQTTRVFAP 251 (351)
Q Consensus 179 ~~i~~~~~~~~l~-~~~~dg~i~~~d--~~~~~~~~~~~~~~~~~----~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~ 251 (351)
..++|+.+.+.+. +-+.+-.|.-|| +.++.......+..++. ..-..-.++...+|.+.++.=..++|..+|.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 4678888777554 445667787777 55554322222222221 1112234555667888777777889999999
Q ss_pred CCccccccCccceEEeccccccccceeEEEEee
Q 048511 252 WKNVASLMGENSWHEVARPQVHGHDINCVTIIQ 284 (351)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 284 (351)
.+++ .+..+......|+|++|-.
T Consensus 241 ~tGK----------~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 241 TTGK----------ILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCc----------EEEEEEcCCCceEEEEecC
Confidence 9998 4444445567799999965
No 420
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.22 E-value=1.7 Score=43.27 Aligned_cols=154 Identities=8% Similarity=0.034 Sum_probs=86.7
Q ss_pred EEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEE--------EcCCCCEEEEEeeCCeEEEEEcccCc----c
Q 048511 142 LSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGH--------WSPDGRSILAHGYGGAFHLWRNVGVD----I 209 (351)
Q Consensus 142 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~--------~~~~~~~l~~~~~dg~i~~~d~~~~~----~ 209 (351)
+-.+.|+.+.+|+.++ +.....+. +....|..+. |-|.=+++++-+.--.|.++-+.-.+ .
T Consensus 93 aWiTiDn~L~lWny~~--~~e~~~~d-----~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~ 165 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYES--DNELAEYD-----GLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGEL 165 (1311)
T ss_pred eEEEeCCeEEEEEcCC--CCcccccc-----chhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcc
Confidence 3445688999999998 32222221 2222333332 34444666666666677777653221 1
Q ss_pred cCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccc--------cc---cC---ccceEEecccc-ccc
Q 048511 210 DNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVA--------SL---MG---ENSWHEVARPQ-VHG 274 (351)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~--------~~---~~---~~~~~~~~~~~-~~~ 274 (351)
..+....++......|+++....+|+.+++| .|| .||.+..... .. +. ......+..+. .+.
T Consensus 166 ~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~ 242 (1311)
T KOG1900|consen 166 SIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK 242 (1311)
T ss_pred cccccceeeecCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC
Confidence 1111112222234578889988899988876 455 4554422110 00 00 00000111222 456
Q ss_pred cceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511 275 HDINCVTIIQGKGNHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 275 ~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 307 (351)
.+|..+++.. ....+.+-++.|+|.+|++.+
T Consensus 243 dpI~qi~ID~--SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 243 DPIRQITIDN--SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CcceeeEecc--ccceeeeeccCceEEEEEccC
Confidence 6899999987 788899999999999999874
No 421
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.17 E-value=0.79 Score=36.84 Aligned_cols=79 Identities=13% Similarity=0.149 Sum_probs=54.5
Q ss_pred EcCCCCEEEEEeeCCeEEEEEcccCcccCcc-cccc-cc-------cccccEEEEEeecCCCEEEEEeCCCcEEEEcCCC
Q 048511 183 WSPDGRSILAHGYGGAFHLWRNVGVDIDNWQ-PQKV-PS-------GHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWK 253 (351)
Q Consensus 183 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~-~~-------~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~ 253 (351)
+..++.++++-+.+|.+++||+.+.+..... .+.. +. .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4567889999999999999999886431110 1111 11 3456788899998998777765 67899999754
Q ss_pred ccccccCccceEEeccc
Q 048511 254 NVASLMGENSWHEVARP 270 (351)
Q Consensus 254 ~~~~~~~~~~~~~~~~~ 270 (351)
+ +|..+...
T Consensus 97 ~--------~W~~vsd~ 105 (219)
T PF07569_consen 97 G--------CWIRVSDS 105 (219)
T ss_pred c--------eeEEeccc
Confidence 4 56665443
No 422
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.05 E-value=8.1 Score=36.51 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=27.5
Q ss_pred ccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511 223 AAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 223 ~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
+.+..+..||+.++|+--...|.|.+-+....+
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQ 249 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhh
Confidence 567788999999999988899999988876554
No 423
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=92.75 E-value=10 Score=37.00 Aligned_cols=222 Identities=10% Similarity=0.078 Sum_probs=130.1
Q ss_pred ccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC-----------CceeEEEEEecccccc--
Q 048511 49 SILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS-----------SSYQVSVESLLIGHED-- 115 (351)
Q Consensus 49 ~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~h~~-- 115 (351)
.+.|+++.. +.+++..++.-+.+.....+.......+++.+....+.+.. ....+.....+..++-
T Consensus 684 ~d~l~~~~~-~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v 762 (1096)
T KOG1897|consen 684 PDSLASANG-GALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV 762 (1096)
T ss_pred CceEEEecC-CceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeE
Confidence 446666654 56888877765554444444455666666666444444321 1222233333222211
Q ss_pred -------------ceEEEEecCCCCCCCC-CcccCCCceeEEeec----------CCeEEEEeccCCCcceEEEEEeccc
Q 048511 116 -------------WVYSVQWEPPSTAPSD-GVSCQQPSSILSASM----------DKTMMIWQPEKTTGIWMNVVTVGEL 171 (351)
Q Consensus 116 -------------~v~~l~~~p~~~~~~~-~~~~~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~ 171 (351)
.+.+..|. .| +.+ +++|.. .|.|.++.... ...++.+.-
T Consensus 763 l~~hef~~~E~~~Si~s~~~~------~d~~t~------~vVGT~~v~Pde~ep~~GRIivfe~~e--~~~L~~v~e--- 825 (1096)
T KOG1897|consen 763 LSSHEFERNETALSIISCKFT------DDPNTY------YVVGTGLVYPDENEPVNGRIIVFEFEE--LNSLELVAE--- 825 (1096)
T ss_pred Eeeccccccceeeeeeeeeec------CCCceE------EEEEEEeeccCCCCcccceEEEEEEec--CCceeeeee---
Confidence 23344466 33 445 666653 57788888776 222222220
Q ss_pred cccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcC
Q 048511 172 SHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAP 251 (351)
Q Consensus 172 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~ 251 (351)
..-.+.+.++.. -+|+++| +.+..|++|+..+.+ .++.-..+..++..+...-.+..++.|.--+++.+...
T Consensus 826 ~~v~Gav~aL~~-fngkllA--~In~~vrLye~t~~~-----eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y 897 (1096)
T KOG1897|consen 826 TVVKGAVYALVE-FNGKLLA--GINQSVRLYEWTTER-----ELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQY 897 (1096)
T ss_pred eeeccceeehhh-hCCeEEE--ecCcEEEEEEccccc-----eehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEE
Confidence 012233444432 2455444 567789999998762 35555567778889998889999999988888887766
Q ss_pred CCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 252 WKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
+..+ ..+..+++. .+...++++.+.. +..++.+..+|.+.+-..+
T Consensus 898 ~~~e------g~f~evArD-~~p~Wmtaveil~---~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 898 KGDE------GNFEEVARD-YNPNWMTAVEILD---DDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred eccC------CceEEeehh-hCccceeeEEEec---CceEEeecccccEEEEEec
Confidence 6554 234455544 4667788888875 6667777788887776543
No 424
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.68 E-value=3 Score=36.81 Aligned_cols=165 Identities=12% Similarity=-0.005 Sum_probs=86.9
Q ss_pred cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccc-cccceE-EEEEcCCCCEE
Q 048511 113 HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSH-SALGFY-GGHWSPDGRSI 190 (351)
Q Consensus 113 h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~i~-~i~~~~~~~~l 190 (351)
-...|..+-.. ||++. +..-+. ..+.++++.+..-+..+... ..++ ....|+ .+..-..|..+
T Consensus 219 ~~~~v~qllL~------Pdg~~------LYv~~g-~~~~v~~L~~r~l~~rkl~~--dspg~~~~~Vte~l~lL~Gg~SL 283 (733)
T COG4590 219 PFSDVSQLLLT------PDGKT------LYVRTG-SELVVALLDKRSLQIRKLVD--DSPGDSRHQVTEQLYLLSGGFSL 283 (733)
T ss_pred CccchHhhEEC------CCCCE------EEEecC-CeEEEEeecccccchhhhhh--cCCCchHHHHHHHHHHHhCceeE
Confidence 34456666666 67776 554433 67889988763211111111 0011 001111 11223356678
Q ss_pred EEEeeCCeEEEE-EcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecc
Q 048511 191 LAHGYGGAFHLW-RNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVAR 269 (351)
Q Consensus 191 ~~~~~dg~i~~~-d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 269 (351)
++++.||.|.-| |.+......+..++.++-....+..+.-..+.+-+++-...|++.++.....+. .+..
T Consensus 284 Lv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~---------lL~~ 354 (733)
T COG4590 284 LVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL---------LLFE 354 (733)
T ss_pred EEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc---------eehh
Confidence 888889888776 554443222333333333333444333333445577777888888876544431 1111
Q ss_pred ccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 270 PQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 270 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
. .-..+.-++++| .+.++++- +.|.++++.++
T Consensus 355 ~--~~~~~~~~~~Sp--~~~~Ll~e-~~gki~~~~l~ 386 (733)
T COG4590 355 R--AYQAPQLVAMSP--NQAYLLSE-DQGKIRLAQLE 386 (733)
T ss_pred h--hhcCcceeeeCc--ccchheee-cCCceEEEEec
Confidence 1 112356788999 77777664 55678888765
No 425
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.61 E-value=4.3 Score=32.16 Aligned_cols=151 Identities=9% Similarity=-0.013 Sum_probs=80.4
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC---C---eEEEEE-cccCcccCcc
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG---G---AFHLWR-NVGVDIDNWQ 213 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g---~i~~~d-~~~~~~~~~~ 213 (351)
|+.+...+.|.+|++..........+. .-+.|..+.++..|.++++--.+ . .+|+|= .+..... ..
T Consensus 31 Lfva~~g~~Vev~~l~~~~~~~~~~F~------Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~-~~ 103 (215)
T PF14761_consen 31 LFVAASGCKVEVYDLEQEECPLLCTFS------TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE-NS 103 (215)
T ss_pred EEEEcCCCEEEEEEcccCCCceeEEEc------chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhccc-CC
Confidence 545466778999999964455566554 23678999999999999986543 2 566662 2211000 01
Q ss_pred ccc-cccc---------------------ccccEEEEEeec-CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccc
Q 048511 214 PQK-VPSG---------------------HFAAVMDISWSR-SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARP 270 (351)
Q Consensus 214 ~~~-~~~~---------------------~~~~v~~v~~sp-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 270 (351)
++. .+-| -...+.+++..| .|++ +.|+ ++.+.||.+..................+
T Consensus 104 ~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~L-lVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l 181 (215)
T PF14761_consen 104 PVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNL-LVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSL 181 (215)
T ss_pred cEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCE-EEEc-CCEEEEEEEEEEEEecccccEEechhhh
Confidence 111 1111 123456677777 4554 4454 5688999876544200000000000111
Q ss_pred ccc--ccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511 271 QVH--GHDINCVTIIQGKGNHRFVSGADEKVARVFEA 305 (351)
Q Consensus 271 ~~~--~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~ 305 (351)
..| +-.+..+++.. .++|..++. .++++.+
T Consensus 182 ~~~~~~~~p~~v~ic~----~yiA~~s~~-ev~Vlkl 213 (215)
T PF14761_consen 182 IDHIDNFKPTQVAICE----GYIAVMSDL-EVLVLKL 213 (215)
T ss_pred hheecCceEEEEEEEe----eEEEEecCC-EEEEEEE
Confidence 111 12256777764 567766544 5566654
No 426
>PLN02193 nitrile-specifier protein
Probab=92.60 E-value=8.1 Score=35.32 Aligned_cols=72 Identities=11% Similarity=0.211 Sum_probs=38.6
Q ss_pred CCCEEEEEeeC----CeEEEEEcccCcccCcccccccc--cccccEEEEEeecCCCEEEEEeCC--------------Cc
Q 048511 186 DGRSILAHGYG----GAFHLWRNVGVDIDNWQPQKVPS--GHFAAVMDISWSRSSDYLLSVSHD--------------QT 245 (351)
Q Consensus 186 ~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~~~~--~~~~~v~~v~~sp~~~~l~s~~~d--------------g~ 245 (351)
+++.++.++.+ ..+.+||+.+.+ |..+.... .......+++ .-++++++.|+.+ ..
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~~---W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~nd 403 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQDK---WTQVETFGVRPSERSVFASA-AVGKHIVIFGGEIAMDPLAHVGPGQLTDG 403 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCCE---EEEeccCCCCCCCcceeEEE-EECCEEEEECCccCCccccccCccceecc
Confidence 56666766655 468899988764 33232210 0111111222 2356677777753 24
Q ss_pred EEEEcCCCccccccCccceEEecc
Q 048511 246 TRVFAPWKNVASLMGENSWHEVAR 269 (351)
Q Consensus 246 i~vwd~~~~~~~~~~~~~~~~~~~ 269 (351)
+.+||+.+. .|..+..
T Consensus 404 v~~~D~~t~--------~W~~~~~ 419 (470)
T PLN02193 404 TFALDTETL--------QWERLDK 419 (470)
T ss_pred EEEEEcCcC--------EEEEccc
Confidence 778887655 4666554
No 427
>PRK13684 Ycf48-like protein; Provisional
Probab=92.48 E-value=6.6 Score=34.01 Aligned_cols=157 Identities=11% Similarity=0.217 Sum_probs=86.7
Q ss_pred ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE-EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEE
Q 048511 114 EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI-WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILA 192 (351)
Q Consensus 114 ~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 192 (351)
...+.++.+. +++.+ ++++ ..|.+.. +|-.. ..+..... .....++.+.+.++++.+++
T Consensus 172 ~g~~~~i~~~------~~g~~------v~~g-~~G~i~~s~~~gg--~tW~~~~~-----~~~~~l~~i~~~~~g~~~~v 231 (334)
T PRK13684 172 AGVVRNLRRS------PDGKY------VAVS-SRGNFYSTWEPGQ--TAWTPHQR-----NSSRRLQSMGFQPDGNLWML 231 (334)
T ss_pred cceEEEEEEC------CCCeE------EEEe-CCceEEEEcCCCC--CeEEEeeC-----CCcccceeeeEcCCCCEEEE
Confidence 4467888888 56655 5444 4554432 22111 22322211 33457889999999887665
Q ss_pred EeeCCeEEEEEcccCcccCccccccc-ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccc
Q 048511 193 HGYGGAFHLWRNVGVDIDNWQPQKVP-SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQ 271 (351)
Q Consensus 193 ~~~dg~i~~~d~~~~~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 271 (351)
+ ..|.+++=..+.+. .|+.+..- ......+.++.+.|++..+++ +.+|.+. .....++ .|+.+....
T Consensus 232 g-~~G~~~~~s~d~G~--sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~-------tW~~~~~~~ 299 (334)
T PRK13684 232 A-RGGQIRFNDPDDLE--SWSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDGGK-------TWEKDPVGE 299 (334)
T ss_pred e-cCCEEEEccCCCCC--ccccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCCCC-------CCeECCcCC
Confidence 4 55765432233332 12222111 112235788999998776654 4677654 3444443 677654322
Q ss_pred ccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511 272 VHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA 305 (351)
Q Consensus 272 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~ 305 (351)
.-....+.+.|.. ++.. ...+..|.|.-|+-
T Consensus 300 ~~~~~~~~~~~~~--~~~~-~~~G~~G~il~~~~ 330 (334)
T PRK13684 300 EVPSNFYKIVFLD--PEKG-FVLGQRGVLLRYVG 330 (334)
T ss_pred CCCcceEEEEEeC--CCce-EEECCCceEEEecC
Confidence 2234577888876 4444 55667888877764
No 428
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.47 E-value=7.1 Score=34.35 Aligned_cols=60 Identities=20% Similarity=0.293 Sum_probs=35.6
Q ss_pred cceEEEEEcCCCCEEEEEeeC-------------------CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCE
Q 048511 176 LGFYGGHWSPDGRSILAHGYG-------------------GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDY 236 (351)
Q Consensus 176 ~~i~~i~~~~~~~~l~~~~~d-------------------g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 236 (351)
.....++|.|+|.+.++-+.. |.|.-++..+++ ...+...-.....++|+|+|++
T Consensus 124 ~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~------~e~~a~G~rnp~Gl~~d~~G~l 197 (367)
T TIGR02604 124 HSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGK------LRVVAHGFQNPYGHSVDSWGDV 197 (367)
T ss_pred ccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCe------EEEEecCcCCCccceECCCCCE
Confidence 346789999999866654421 345555555432 1111111233568999999988
Q ss_pred EEEEe
Q 048511 237 LLSVS 241 (351)
Q Consensus 237 l~s~~ 241 (351)
+++-.
T Consensus 198 ~~tdn 202 (367)
T TIGR02604 198 FFCDN 202 (367)
T ss_pred EEEcc
Confidence 77644
No 429
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=92.24 E-value=6.1 Score=33.11 Aligned_cols=118 Identities=7% Similarity=0.196 Sum_probs=68.8
Q ss_pred CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe------eCCeEEEEEcccCcccCcccccc-c-
Q 048511 147 DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG------YGGAFHLWRNVGVDIDNWQPQKV-P- 218 (351)
Q Consensus 147 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~~~~~~~~-~- 218 (351)
-..|++||... .+|...-. .-.+.|..+.|..+.+.++.|. ....+..||+.+.. |..... .
T Consensus 15 C~~lC~yd~~~--~qW~~~g~-----~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~---w~~~~~~~s 84 (281)
T PF12768_consen 15 CPGLCLYDTDN--SQWSSPGN-----GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT---WSSLGGGSS 84 (281)
T ss_pred CCEEEEEECCC--CEeecCCC-----CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe---eeecCCccc
Confidence 45699999988 66654332 3566899999986666666664 34578899988753 211211 1
Q ss_pred ccccccEEEEEeec-CC-CEEEEEe-CCC--cEEEEcCCCccccccCccceEEecc-ccccccceeEEEEee
Q 048511 219 SGHFAAVMDISWSR-SS-DYLLSVS-HDQ--TTRVFAPWKNVASLMGENSWHEVAR-PQVHGHDINCVTIIQ 284 (351)
Q Consensus 219 ~~~~~~v~~v~~sp-~~-~~l~s~~-~dg--~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~ 284 (351)
..-.++|..+.+.. ++ ++.+.|. .++ .|..||= ..|..+.. .......|..+.+.+
T Consensus 85 ~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dG----------s~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 85 NSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDG----------SSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred ccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcC----------CceEeccccccCCCCEEEEEEEEe
Confidence 12246787777643 33 3444443 333 4556652 24656555 223344566666655
No 430
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.24 E-value=2.2 Score=36.88 Aligned_cols=119 Identities=13% Similarity=0.067 Sum_probs=58.5
Q ss_pred eEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccc-cccccccccEEEEEeecC----CCEEEEEeCC--------C
Q 048511 178 FYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQ-KVPSGHFAAVMDISWSRS----SDYLLSVSHD--------Q 244 (351)
Q Consensus 178 i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~~~~~~v~~v~~sp~----~~~l~s~~~d--------g 244 (351)
.+.|+|.|+++.++ +...|.|++++...........+ ............++++|+ +.+.++.+.. .
T Consensus 4 P~~~a~~pdG~l~v-~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 4 PRSMAFLPDGRLLV-AERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp EEEEEEETTSCEEE-EETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred ceEEEEeCCCcEEE-EeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 57899999987655 56699999999332210000001 122334567899999994 3333333321 2
Q ss_pred cEEEEcCCCcccccc-CccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCe
Q 048511 245 TTRVFAPWKNVASLM-GENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKV 299 (351)
Q Consensus 245 ~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~ 299 (351)
.|.-|.......... ....+..........+.-..|+|.| |+.+.++.++.+.
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp--DG~LYvs~G~~~~ 136 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP--DGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T--TSEEEEEEB-TTT
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC--CCcEEEEeCCCCC
Confidence 344344433310000 0011111122112334467799999 8888887776554
No 431
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.07 E-value=7.3 Score=33.61 Aligned_cols=125 Identities=13% Similarity=0.141 Sum_probs=68.1
Q ss_pred ceEEEEEcCCCCEEEEEeeC------CeEEEEEcccCcccCccccccc---------ccccccEEEEEeecCCCEEEEEe
Q 048511 177 GFYGGHWSPDGRSILAHGYG------GAFHLWRNVGVDIDNWQPQKVP---------SGHFAAVMDISWSRSSDYLLSVS 241 (351)
Q Consensus 177 ~i~~i~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~---------~~~~~~v~~v~~sp~~~~l~s~~ 241 (351)
..-+|++.+++.++++.-.+ ..|+.++........+..-..+ ........+|+++|+|+.|+++.
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 44578887788888877777 7888888763221111111111 12345688999999999666554
Q ss_pred C-----CC--c-------EEEE--cCCCccccccCccce-EEeccccc--cccceeEEEEeeeCCCcEEEE-----ecCC
Q 048511 242 H-----DQ--T-------TRVF--APWKNVASLMGENSW-HEVARPQV--HGHDINCVTIIQGKGNHRFVS-----GADE 297 (351)
Q Consensus 242 ~-----dg--~-------i~vw--d~~~~~~~~~~~~~~-~~~~~~~~--~~~~i~~~~~~~~~~~~~l~s-----~~~d 297 (351)
+ |+ . ++++ |..+.... ...+ ..+..... ....|+.+.+.+ ++++|+- .+..
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~---~~~~~y~ld~~~~~~~~~~isd~~al~--d~~lLvLER~~~~~~~ 240 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEP---VAEYAYPLDPPPTAPGDNGISDIAALP--DGRLLVLERDFSPGTG 240 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCcc---ceEEEEeCCccccccCCCCceeEEEEC--CCcEEEEEccCCCCcc
Confidence 3 22 1 4454 44331100 0011 11111000 345689999988 7776662 2234
Q ss_pred CeEEEEecC
Q 048511 298 KVARVFEAP 306 (351)
Q Consensus 298 g~v~vw~~~ 306 (351)
..++|+.+.
T Consensus 241 ~~~ri~~v~ 249 (326)
T PF13449_consen 241 NYKRIYRVD 249 (326)
T ss_pred ceEEEEEEE
Confidence 566666654
No 432
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.77 E-value=4.9 Score=31.85 Aligned_cols=112 Identities=13% Similarity=0.210 Sum_probs=65.0
Q ss_pred CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCC---C---cEEEE---cCCCccccc
Q 048511 188 RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD---Q---TTRVF---APWKNVASL 258 (351)
Q Consensus 188 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d---g---~i~vw---d~~~~~~~~ 258 (351)
..|+.+.....|.+|++..... +++.++.. -+.|..+.++..|+||+|-=.+ . .+|+| +........
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~---~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~ 104 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEEC---PLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP 104 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCC---ceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence 4555557778899999985432 44555543 3789999999999999986432 2 45664 332111111
Q ss_pred c-----C-----------ccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCch
Q 048511 259 M-----G-----------ENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLS 308 (351)
Q Consensus 259 ~-----~-----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 308 (351)
. + ......+..+ -..++.|++-.| -.|++++.. ++++.+|.+..+
T Consensus 105 v~vRiaG~~v~~~~~~~~~~qleiiElP--l~~~p~ciaCC~-~tG~LlVg~--~~~l~lf~l~~~ 165 (215)
T PF14761_consen 105 VRVRIAGHRVTPSFNESSKDQLEIIELP--LSEPPLCIACCP-VTGNLLVGC--GNKLVLFTLKYQ 165 (215)
T ss_pred EEEEEcccccccCCCCccccceEEEEec--CCCCCCEEEecC-CCCCEEEEc--CCEEEEEEEEEE
Confidence 0 0 0011111111 134578888888 346555544 458899987633
No 433
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.65 E-value=2 Score=38.08 Aligned_cols=84 Identities=13% Similarity=0.046 Sum_probs=51.7
Q ss_pred EEEeecCCCEEEEEeCCCcEEE---EcCCCccccccCccceEEeccccc-cccceeEEEEeee---------CCCcEEEE
Q 048511 227 DISWSRSSDYLLSVSHDQTTRV---FAPWKNVASLMGENSWHEVARPQV-HGHDINCVTIIQG---------KGNHRFVS 293 (351)
Q Consensus 227 ~v~~sp~~~~l~s~~~dg~i~v---wd~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~---------~~~~~l~s 293 (351)
.++.+|++++|+.+..++.+.+ |+......... ...+.....+.. .+..|+++.+.|- .|...++.
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~-~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~V 84 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENEN-TYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAV 84 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCC-eEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEE
Confidence 4678999999999987776655 54422110000 011111111111 1145888887763 35678999
Q ss_pred ecCCCeEEEEecCchhhh
Q 048511 294 GADEKVARVFEAPLSFLK 311 (351)
Q Consensus 294 ~~~dg~v~vw~~~~~~~~ 311 (351)
|-.+|.|++|...|..+.
T Consensus 85 G~ssG~vrfyte~G~LL~ 102 (415)
T PF14655_consen 85 GTSSGYVRFYTENGVLLL 102 (415)
T ss_pred EecccEEEEEeccchHHH
Confidence 999999999999877654
No 434
>PLN02153 epithiospecifier protein
Probab=91.26 E-value=9.2 Score=33.18 Aligned_cols=12 Identities=8% Similarity=0.174 Sum_probs=8.7
Q ss_pred CeEEEEEcccCc
Q 048511 197 GAFHLWRNVGVD 208 (351)
Q Consensus 197 g~i~~~d~~~~~ 208 (351)
..+.+||+.+.+
T Consensus 217 ~~v~~yd~~~~~ 228 (341)
T PLN02153 217 NAVQFFDPASGK 228 (341)
T ss_pred CceEEEEcCCCc
Confidence 458888887754
No 435
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=91.21 E-value=9.6 Score=33.29 Aligned_cols=89 Identities=13% Similarity=0.106 Sum_probs=46.4
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEE-EEEcCCCCEEE-EEeeC--C--eEEEEEcc-cCcccCcc
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYG-GHWSPDGRSIL-AHGYG--G--AFHLWRNV-GVDIDNWQ 213 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~-i~~~~~~~~l~-~~~~d--g--~i~~~d~~-~~~~~~~~ 213 (351)
|.....||.-+||-+....+. ...+. .....|.. +.++++++.|+ ++..+ . .|...++. .+.
T Consensus 251 l~~s~~~G~~hly~~~~~~~~-~~~lT-----~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~----- 319 (353)
T PF00930_consen 251 LWISERDGYRHLYLYDLDGGK-PRQLT-----SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE----- 319 (353)
T ss_dssp EEEEETTSSEEEEEEETTSSE-EEESS------SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE-----
T ss_pred EEEEEcCCCcEEEEEcccccc-eeccc-----cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC-----
Confidence 666667887666666553233 22222 33445644 67788776554 44442 3 44444555 332
Q ss_pred cccccccccccEEEEEeecCCCEEEEEe
Q 048511 214 PQKVPSGHFAAVMDISWSRSSDYLLSVS 241 (351)
Q Consensus 214 ~~~~~~~~~~~v~~v~~sp~~~~l~s~~ 241 (351)
...+......-..+.|||++++++...
T Consensus 320 -~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 320 -PKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp -EEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred -eEeccCCCCCceEEEECCCCCEEEEEE
Confidence 223322222226899999999976543
No 436
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.99 E-value=12 Score=33.88 Aligned_cols=116 Identities=8% Similarity=0.011 Sum_probs=61.6
Q ss_pred ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCC------
Q 048511 114 EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG------ 187 (351)
Q Consensus 114 ~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~------ 187 (351)
-...+.|+|. +|+++ |++--..|.|++++........+..+..............|+++|+-
T Consensus 29 L~~Pw~mafl------PDG~l------lVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n 96 (454)
T TIGR03606 29 LNKPWALLWG------PDNQL------WVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGN 96 (454)
T ss_pred CCCceEEEEc------CCCeE------EEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCC
Confidence 4457899999 78876 66655469999998655222221111100001135678999999874
Q ss_pred CEEEEEe----------eCCeEEEEEcccC--cccCcc-ccccc---ccccccEEEEEeecCCCEEEEEeCC
Q 048511 188 RSILAHG----------YGGAFHLWRNVGV--DIDNWQ-PQKVP---SGHFAAVMDISWSRSSDYLLSVSHD 243 (351)
Q Consensus 188 ~~l~~~~----------~dg~i~~~d~~~~--~~~~~~-~~~~~---~~~~~~v~~v~~sp~~~~l~s~~~d 243 (351)
.+|+... ....|.-|.+... .....+ .+..+ ..|. -..|.|.|||.++++.+..
T Consensus 97 ~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 97 PYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred cEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence 3454442 1234545554321 111011 11111 1233 3467899999877755543
No 437
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=90.82 E-value=4.3 Score=34.00 Aligned_cols=95 Identities=14% Similarity=0.342 Sum_probs=58.0
Q ss_pred CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe------CCCcEEEEcCCCccccccCccceEEecc-
Q 048511 197 GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS------HDQTTRVFAPWKNVASLMGENSWHEVAR- 269 (351)
Q Consensus 197 g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~~~- 269 (351)
..|++||..+.+ | ...-.+-.+.|+++.|..+.++++.|. ....+..||..+.. |..+..
T Consensus 16 ~~lC~yd~~~~q---W--~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~--------w~~~~~~ 82 (281)
T PF12768_consen 16 PGLCLYDTDNSQ---W--SSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT--------WSSLGGG 82 (281)
T ss_pred CEEEEEECCCCE---e--ecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe--------eeecCCc
Confidence 458999987763 2 222223467899999997767777664 35578889987664 544443
Q ss_pred c-cccccceeEEEEeeeCCCcEEEEec-CCCe--EEEEe
Q 048511 270 P-QVHGHDINCVTIIQGKGNHRFVSGA-DEKV--ARVFE 304 (351)
Q Consensus 270 ~-~~~~~~i~~~~~~~~~~~~~l~s~~-~dg~--v~vw~ 304 (351)
. ..-..+++.+.+...+..++.++|. .++. |..||
T Consensus 83 ~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 83 SSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred ccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEc
Confidence 1 1234668888876533345555554 4444 44554
No 438
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.76 E-value=9.9 Score=32.68 Aligned_cols=62 Identities=5% Similarity=-0.013 Sum_probs=32.1
Q ss_pred eEEeec-----CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCC----eEEEEEcccCc
Q 048511 141 ILSASM-----DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGG----AFHLWRNVGVD 208 (351)
Q Consensus 141 l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg----~i~~~d~~~~~ 208 (351)
.+.|+. ...+..||+.+ .++...-.+ .... .....+...++++.+.|+.++ .+..||+.+.+
T Consensus 127 Yv~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~---p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 127 YVGGGNRNGKPSNKSYLFNLET--QEWFELPDF---PGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred EEEeCcCCCccCceEEEEcCCC--CCeeECCCC---CCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 555553 24578888887 555442211 1101 111122233566777777653 35688887754
No 439
>PRK13684 Ycf48-like protein; Provisional
Probab=90.65 E-value=11 Score=32.77 Aligned_cols=112 Identities=15% Similarity=0.193 Sum_probs=62.7
Q ss_pred ccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCc
Q 048511 175 ALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKN 254 (351)
Q Consensus 175 ~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~ 254 (351)
...+..+.+.|++.+++++ ..|.+..- .+.+. ..|..+. ......++++.+.++++.++.+ ..|.+++=....+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s-~~~gg-~tW~~~~--~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G 245 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYST-WEPGQ-TAWTPHQ--RNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDL 245 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEE-cCCCC-CeEEEee--CCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCC
Confidence 4568899999988766554 44544321 11110 1122222 1234578999999999877665 5676643233333
Q ss_pred cccccCccceEEeccccc-cccceeEEEEeeeCCCcEEEEecCCCeEEE
Q 048511 255 VASLMGENSWHEVARPQV-HGHDINCVTIIQGKGNHRFVSGADEKVARV 302 (351)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~s~~~dg~v~v 302 (351)
. .|+.+..... ....+..+.+.+ ++..++ ++.+|.+..
T Consensus 246 ~-------sW~~~~~~~~~~~~~l~~v~~~~--~~~~~~-~G~~G~v~~ 284 (334)
T PRK13684 246 E-------SWSKPIIPEITNGYGYLDLAYRT--PGEIWA-GGGNGTLLV 284 (334)
T ss_pred C-------ccccccCCccccccceeeEEEcC--CCCEEE-EcCCCeEEE
Confidence 3 5665433311 223478888887 566555 446676543
No 440
>PLN02153 epithiospecifier protein
Probab=90.35 E-value=11 Score=32.65 Aligned_cols=151 Identities=10% Similarity=0.180 Sum_probs=70.2
Q ss_pred eEEeecC-----CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-----------CeEEEEEc
Q 048511 141 ILSASMD-----KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-----------GAFHLWRN 204 (351)
Q Consensus 141 l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----------g~i~~~d~ 204 (351)
++.|+.+ ..+.+||+++ ..+...-.+.............+..-+++.++.|+.+ ..+.+||+
T Consensus 89 yv~GG~~~~~~~~~v~~yd~~t--~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~ 166 (341)
T PLN02153 89 YIFGGRDEKREFSDFYSYDTVK--NEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNI 166 (341)
T ss_pred EEECCCCCCCccCcEEEEECCC--CEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEEC
Confidence 6666643 3577888887 5554322211000011111111222355666666643 24778888
Q ss_pred ccCcccCcccccccc---cccccEEEEEeecCCCEEEEEeCC-------------CcEEEEcCCCccccccCccceEEec
Q 048511 205 VGVDIDNWQPQKVPS---GHFAAVMDISWSRSSDYLLSVSHD-------------QTTRVFAPWKNVASLMGENSWHEVA 268 (351)
Q Consensus 205 ~~~~~~~~~~~~~~~---~~~~~v~~v~~sp~~~~l~s~~~d-------------g~i~vwd~~~~~~~~~~~~~~~~~~ 268 (351)
.+.. |..+.... ...... +++ .-++++++.++.+ ..+.+||+.+. .|..+.
T Consensus 167 ~~~~---W~~l~~~~~~~~~r~~~-~~~-~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~--------~W~~~~ 233 (341)
T PLN02153 167 ADGK---WVQLPDPGENFEKRGGA-GFA-VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASG--------KWTEVE 233 (341)
T ss_pred CCCe---EeeCCCCCCCCCCCCcc-eEE-EECCeEEEEeccccccccCCccceecCceEEEEcCCC--------cEEecc
Confidence 7653 33222211 111111 122 2255665555432 35788887665 466654
Q ss_pred cccc-cc-cceeEEEEeeeCCCcEEEEecCC--------------CeEEEEecCchh
Q 048511 269 RPQV-HG-HDINCVTIIQGKGNHRFVSGADE--------------KVARVFEAPLSF 309 (351)
Q Consensus 269 ~~~~-~~-~~i~~~~~~~~~~~~~l~s~~~d--------------g~v~vw~~~~~~ 309 (351)
.... .. ....+++ .. ++.+++.|+.. ..+..+|+....
T Consensus 234 ~~g~~P~~r~~~~~~-~~--~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 234 TTGAKPSARSVFAHA-VV--GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred ccCCCCCCcceeeeE-EE--CCEEEEECcccCCccccccccccccccEEEEEcCccE
Confidence 3110 11 1112222 22 57788888852 146677766443
No 441
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.33 E-value=11 Score=33.99 Aligned_cols=58 Identities=7% Similarity=0.059 Sum_probs=36.5
Q ss_pred ceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccc-c-cccccEEEEEeecCC
Q 048511 177 GFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP-S-GHFAAVMDISWSRSS 234 (351)
Q Consensus 177 ~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~-~~~~~v~~v~~sp~~ 234 (351)
..+.|+|.|+++.|++--..|.|++++..+........+..+ . ........|+++|+-
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 467899999998776655569999997654422111111111 1 135678999999874
No 442
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.20 E-value=8.2 Score=34.83 Aligned_cols=139 Identities=11% Similarity=0.068 Sum_probs=78.0
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCC-------EEEEEeeCCeEEEEEcccCcccCcc
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR-------SILAHGYGGAFHLWRNVGVDIDNWQ 213 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-------~l~~~~~dg~i~~~d~~~~~~~~~~ 213 (351)
+..|+.-..++--|++. |+.+....+ +.. + -+.|.|+.+ .-++|-.+..|.-.|.+.... +
T Consensus 483 ~~dg~~~~kLykmDIEr--GkvveeW~~-----~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN---K 550 (776)
T COG5167 483 YLDGGERDKLYKMDIER--GKVVEEWDL-----KDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN---K 550 (776)
T ss_pred EecCCCcccceeeeccc--ceeeeEeec-----CCc-c-eeecCCchhHHhcCccceEEeecccceEEecccccCC---c
Confidence 44455555566667766 776666652 222 2 455666421 234455566666666654321 1
Q ss_pred cccccccccccEEEEEeec----CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCc
Q 048511 214 PQKVPSGHFAAVMDISWSR----SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNH 289 (351)
Q Consensus 214 ~~~~~~~~~~~v~~v~~sp----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 289 (351)
+.. ......++.-.|+. ...++|.++..|-|++||.-... ....+.+-+..|..+..+. +|.
T Consensus 551 -i~v-~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r----------AKtalP~lG~aIk~idvta--~Gk 616 (776)
T COG5167 551 -IKV-VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR----------AKTALPGLGDAIKHIDVTA--NGK 616 (776)
T ss_pred -eee-eeehhccccccccccccccCceEEEecCCCceeeehhhcch----------hhhcCcccccceeeeEeec--CCc
Confidence 111 11112222222332 34589999999999999965443 2233445667788999988 787
Q ss_pred EEEEecCCCeEEEEecC
Q 048511 290 RFVSGADEKVARVFEAP 306 (351)
Q Consensus 290 ~l~s~~~dg~v~vw~~~ 306 (351)
++++.+.. .+.+-|++
T Consensus 617 ~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 617 HILATCKN-YLLLTDVP 632 (776)
T ss_pred EEEEeecc-eEEEEecc
Confidence 77666554 66677765
No 443
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.15 E-value=5.6 Score=28.86 Aligned_cols=116 Identities=10% Similarity=0.004 Sum_probs=67.9
Q ss_pred EEEEcCCCCEEEEEeeCCeEEEEEcccCcccC---cccccccccccccEEEEEeec-----CCCEEEEEeCCCcEEEEcC
Q 048511 180 GGHWSPDGRSILAHGYGGAFHLWRNVGVDIDN---WQPQKVPSGHFAAVMDISWSR-----SSDYLLSVSHDQTTRVFAP 251 (351)
Q Consensus 180 ~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~---~~~~~~~~~~~~~v~~v~~sp-----~~~~l~s~~~dg~i~vwd~ 251 (351)
.-.|......|++++..|.|.|++........ ...+..+. -...|++++-.+ +...|+.|+ ...+..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 34566677789999999999999886542111 11222222 345677776444 335566665 568999999
Q ss_pred CCccccccCccceEEeccccccccceeEEEEeeeC-CCcEEEEecCCCeEEEEecCch
Q 048511 252 WKNVASLMGENSWHEVARPQVHGHDINCVTIIQGK-GNHRFVSGADEKVARVFEAPLS 308 (351)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~l~s~~~dg~v~vw~~~~~ 308 (351)
.+... .+.+ .-...++++.+-... ...-++..+.+..|.-||..|+
T Consensus 81 ~~N~d---------~Fyk--e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 81 ENNSD---------LFYK--EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN 127 (136)
T ss_pred ccCch---------hhhh--hCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence 88762 1111 112346777663311 1234555556667777777654
No 444
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=90.08 E-value=9.7 Score=31.46 Aligned_cols=112 Identities=18% Similarity=0.156 Sum_probs=63.8
Q ss_pred ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEe-ccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe
Q 048511 116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQ-PEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG 194 (351)
Q Consensus 116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 194 (351)
.+....|. +++.+ .+....+...+++. ......... .+.. ......|..+.++|||..++...
T Consensus 67 ~l~~PS~d------~~g~~------W~v~~~~~~~~~~~~~~~g~~~~~-~v~~---~~~~~~I~~l~vSpDG~RvA~v~ 130 (253)
T PF10647_consen 67 SLTRPSWD------PDGWV------WTVDDGSGGVRVVRDSASGTGEPV-EVDW---PGLRGRITALRVSPDGTRVAVVV 130 (253)
T ss_pred cccccccc------CCCCE------EEEEcCCCceEEEEecCCCcceeE-Eecc---cccCCceEEEEECCCCcEEEEEE
Confidence 56667788 56665 55555566666664 222112211 1111 11112799999999999887665
Q ss_pred ---eCCeEEEEEcccCccc---C-cccccccccccccEEEEEeecCCCEEEEEeCC
Q 048511 195 ---YGGAFHLWRNVGVDID---N-WQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD 243 (351)
Q Consensus 195 ---~dg~i~~~d~~~~~~~---~-~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d 243 (351)
.++.|.+--+...... . ..+..........+..+.|.+++.+++.+...
T Consensus 131 ~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 131 EDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred ecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCC
Confidence 3577877766422211 0 01112222234578999999999887666543
No 445
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=89.88 E-value=1.9 Score=37.57 Aligned_cols=73 Identities=15% Similarity=0.085 Sum_probs=37.3
Q ss_pred ceEEEEEcCCCCEEEEEe-eC--CeEEEEEcccCcccCccccccccccc-ccEEEEEeecCCCEEEEEeCCCcEEEEcCC
Q 048511 177 GFYGGHWSPDGRSILAHG-YG--GAFHLWRNVGVDIDNWQPQKVPSGHF-AAVMDISWSRSSDYLLSVSHDQTTRVFAPW 252 (351)
Q Consensus 177 ~i~~i~~~~~~~~l~~~~-~d--g~i~~~d~~~~~~~~~~~~~~~~~~~-~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~ 252 (351)
..+.=+|.++|+.|+-++ .| ..+.+.|+.+++ +.++.... .......++|+.+.++-......|+-.|+.
T Consensus 37 YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~------i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~ 110 (386)
T PF14583_consen 37 YFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE------ITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLD 110 (386)
T ss_dssp -TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E------EEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETT
T ss_pred eecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE------EEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECC
Confidence 334457888997665554 44 467777788864 33333322 222245677888887655556788888888
Q ss_pred Ccc
Q 048511 253 KNV 255 (351)
Q Consensus 253 ~~~ 255 (351)
+.+
T Consensus 111 T~e 113 (386)
T PF14583_consen 111 TLE 113 (386)
T ss_dssp T--
T ss_pred cCc
Confidence 876
No 446
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.72 E-value=0.044 Score=48.04 Aligned_cols=134 Identities=9% Similarity=0.133 Sum_probs=91.1
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEE-EEeeCCeEEEEEcccCcccCcccccccc
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSIL-AHGYGGAFHLWRNVGVDIDNWQPQKVPS 219 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 219 (351)
++.++.+..+..||-.. +..... ..+.....++|+.++..++ .+...+.+.+||+.+.. ..++.
T Consensus 49 lavaca~tiv~~YD~ag---q~~le~------n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey------tqqLE 113 (615)
T KOG2247|consen 49 LAVACANTIVIYYDKAG---QVILEL------NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY------TQQLE 113 (615)
T ss_pred eehhhhhhHHHhhhhhc---ceeccc------CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh------HHHHh
Confidence 78888888899998764 222111 2234456788888776554 45567899999997753 22222
Q ss_pred --c-ccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecC
Q 048511 220 --G-HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD 296 (351)
Q Consensus 220 --~-~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~ 296 (351)
+ |.... +.|++....++.+...|.+.|++....+ .+...-.|...++++++.+ ..+.+.++.
T Consensus 114 ~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR----------~iiv~Gkh~RRgtq~av~l---Ed~vil~dc 178 (615)
T KOG2247|consen 114 SGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSR----------RIIVMGKHQRRGTQIAVTL---EDYVILCDC 178 (615)
T ss_pred ccCcchHHH--HhhccCCccccccccccceEEEeccchh----------hhhhhcccccceeEEEecc---cceeeecCc
Confidence 1 22222 6899998889989889999999987665 3333334788899999998 556777777
Q ss_pred CCeEEEEe
Q 048511 297 EKVARVFE 304 (351)
Q Consensus 297 dg~v~vw~ 304 (351)
|..+.+-.
T Consensus 179 d~~L~v~~ 186 (615)
T KOG2247|consen 179 DNTLSVTT 186 (615)
T ss_pred HHHHHHhh
Confidence 76655444
No 447
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.60 E-value=26 Score=35.66 Aligned_cols=140 Identities=12% Similarity=0.088 Sum_probs=80.6
Q ss_pred CCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc-------ee
Q 048511 3 GLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA-------NT 75 (351)
Q Consensus 3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~-------~~ 75 (351)
+.|+.+.+|+.++++++ ..+.+-+..|..|....|...--.+.=++++..+.--.|.++-+.-.+... ..
T Consensus 96 TiDn~L~lWny~~~~e~---~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~ 172 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNEL---AEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSF 172 (1311)
T ss_pred EeCCeEEEEEcCCCCcc---ccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccce
Confidence 45899999999984443 445555667777776532100000222333333333446665443222111 11
Q ss_pred ec-ccccceeeeEeeecCCeEEecCCceeEEEEE-----------------------------ecc-ccccceEEEEecC
Q 048511 76 QS-TYRKEVISLASYIEGPVLVAGSSSYQVSVES-----------------------------LLI-GHEDWVYSVQWEP 124 (351)
Q Consensus 76 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----------------------------~~~-~h~~~v~~l~~~p 124 (351)
.. ..+..+.++....+|+++.+|..+.-..+.- .+. .+.++|..+.+.
T Consensus 173 ~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID- 251 (1311)
T KOG1900|consen 173 KISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID- 251 (1311)
T ss_pred eeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec-
Confidence 11 1144667777788899888876654332211 122 456678888877
Q ss_pred CCCCCCCCcccCCCceeEEeecCCeEEEEeccC
Q 048511 125 PSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK 157 (351)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 157 (351)
..-++ +.+-+..++|.+||+..
T Consensus 252 -----~SR~I------lY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 -----NSRNI------LYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred -----cccce------eeeeccCceEEEEEccC
Confidence 44455 88889999999999986
No 448
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=89.32 E-value=13 Score=31.92 Aligned_cols=99 Identities=16% Similarity=0.227 Sum_probs=49.8
Q ss_pred CCCEEEEEee-----CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCC----cEEEEcCCCccc
Q 048511 186 DGRSILAHGY-----GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQ----TTRVFAPWKNVA 256 (351)
Q Consensus 186 ~~~~l~~~~~-----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg----~i~vwd~~~~~~ 256 (351)
+++..+.|+. ...+..||+.+.+ |..+..+.... .....+..-++++.+.|+.++ .+.+||+.+.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~---W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~-- 196 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQE---WFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN-- 196 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCC---eeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCC--
Confidence 4566666664 2468888887654 34333332111 111222234567777777653 3457777654
Q ss_pred cccCccceEEeccccccccc--e-eEEEEeeeCCCcEEEEecCC
Q 048511 257 SLMGENSWHEVARPQVHGHD--I-NCVTIIQGKGNHRFVSGADE 297 (351)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~--i-~~~~~~~~~~~~~l~s~~~d 297 (351)
.|..+........+ . ....... .++.+++.|+.+
T Consensus 197 ------~W~~~~~~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~ 233 (323)
T TIGR03548 197 ------QWQKVADPTTDSEPISLLGAASIKI-NESLLLCIGGFN 233 (323)
T ss_pred ------eeEECCCCCCCCCceeccceeEEEE-CCCEEEEECCcC
Confidence 47666543110111 1 1111111 157788888876
No 449
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=88.94 E-value=16 Score=32.30 Aligned_cols=15 Identities=27% Similarity=0.749 Sum_probs=11.2
Q ss_pred CeEEEEeccCCCcceEE
Q 048511 148 KTMMIWQPEKTTGIWMN 164 (351)
Q Consensus 148 ~~i~iwd~~~~~~~~~~ 164 (351)
..+.+||..+ ..+..
T Consensus 189 ~~v~~YD~~t--~~W~~ 203 (376)
T PRK14131 189 KEVLSYDPST--NQWKN 203 (376)
T ss_pred ceEEEEECCC--CeeeE
Confidence 4689999988 66654
No 450
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=88.66 E-value=16 Score=32.32 Aligned_cols=41 Identities=20% Similarity=0.401 Sum_probs=21.5
Q ss_pred cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecC
Q 048511 245 TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD 296 (351)
Q Consensus 245 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~ 296 (351)
.+.+||..+. .|..+..+......-.++... ++.+++.|+.
T Consensus 190 ~v~~YD~~t~--------~W~~~~~~p~~~~~~~a~v~~---~~~iYv~GG~ 230 (376)
T PRK14131 190 EVLSYDPSTN--------QWKNAGESPFLGTAGSAVVIK---GNKLWLINGE 230 (376)
T ss_pred eEEEEECCCC--------eeeECCcCCCCCCCcceEEEE---CCEEEEEeee
Confidence 4778887665 466655432211112233333 4667777764
No 451
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=88.64 E-value=14 Score=31.25 Aligned_cols=151 Identities=6% Similarity=0.035 Sum_probs=0.0
Q ss_pred eEEEEeccCCCcceEEEEEecccccc-ccceEEEEEcCCCC------EEEEEeeCCeEEEEEcccCcccCcccccccccc
Q 048511 149 TMMIWQPEKTTGIWMNVVTVGELSHS-ALGFYGGHWSPDGR------SILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH 221 (351)
Q Consensus 149 ~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~------~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~ 221 (351)
.|.+||+.+ .+.++++.+...... .+.+..+.+..... ..++=...+.|.+||+.++ +..+.+..+
T Consensus 35 KLv~~Dl~t--~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~-----~s~Rv~~~~ 107 (287)
T PF03022_consen 35 KLVAFDLKT--NQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATG-----KSWRVLHNS 107 (287)
T ss_dssp EEEEEETTT--TCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTT-----EEEEEETCG
T ss_pred EEEEEECCC--CcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCC-----cEEEEecCC
Q ss_pred -------------------cccEEEEEeec---CCCEEEEEeCCCcEEEEcCCCccccccCccceE----Eecccccccc
Q 048511 222 -------------------FAAVMDISWSR---SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWH----EVARPQVHGH 275 (351)
Q Consensus 222 -------------------~~~v~~v~~sp---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----~~~~~~~~~~ 275 (351)
...+.+++.+| ++++|.-....+. ++|.+.+..........-. .+..+-..+.
T Consensus 108 ~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~ 186 (287)
T PF03022_consen 108 FSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGS 186 (287)
T ss_dssp CTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---
T ss_pred cceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccccCC
Q ss_pred ceeEEEEeeeCCCcEEEEecCCCeEEEEecCchh
Q 048511 276 DINCVTIIQGKGNHRFVSGADEKVARVFEAPLSF 309 (351)
Q Consensus 276 ~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~ 309 (351)
....+++++ +|.++.+--....|..|+..+.+
T Consensus 187 ~s~g~~~D~--~G~ly~~~~~~~aI~~w~~~~~~ 218 (287)
T PF03022_consen 187 QSDGMAIDP--NGNLYFTDVEQNAIGCWDPDGPY 218 (287)
T ss_dssp SECEEEEET--TTEEEEEECCCTEEEEEETTTSB
T ss_pred CCceEEECC--CCcEEEecCCCCeEEEEeCCCCc
No 452
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=88.51 E-value=26 Score=34.35 Aligned_cols=122 Identities=11% Similarity=0.095 Sum_probs=74.6
Q ss_pred ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEe-----ccc---cccccceEEEEEcCCC
Q 048511 116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTV-----GEL---SHSALGFYGGHWSPDG 187 (351)
Q Consensus 116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~---~~~~~~i~~i~~~~~~ 187 (351)
+...++|+| .+... ||.....|.-.|||+..........+.. +.+ .........+.|.++.
T Consensus 147 ~~aDv~FnP-----~~~~q------~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~ 215 (765)
T PF10214_consen 147 PHADVAFNP-----WDQRQ------FAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDS 215 (765)
T ss_pred ccceEEecc-----Cccce------EEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCC
Confidence 566899998 55567 9999999999999992210111011110 111 1112345688998888
Q ss_pred CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC--CCEEEEEeCCCcEEEEcCCCc
Q 048511 188 RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS--SDYLLSVSHDQTTRVFAPWKN 254 (351)
Q Consensus 188 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~--~~~l~s~~~dg~i~vwd~~~~ 254 (351)
+.|++++.. .+.++|+++.... ...........|..+.-+|. ...|+-. ...|...++...
T Consensus 216 ~~lLv~~r~-~l~~~d~~~~~~~---~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~ 278 (765)
T PF10214_consen 216 NRLLVCNRS-KLMLIDFESNWQT---EYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS 278 (765)
T ss_pred CEEEEEcCC-ceEEEECCCCCcc---chhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence 888877655 5889999876421 11122234567888888886 3333332 256777787764
No 453
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=88.35 E-value=11 Score=30.80 Aligned_cols=154 Identities=12% Similarity=0.180 Sum_probs=76.6
Q ss_pred EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC---CeEEEEEccc-CcccCcccccccccccccE
Q 048511 150 MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG---GAFHLWRNVG-VDIDNWQPQKVPSGHFAAV 225 (351)
Q Consensus 150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~i~~~d~~~-~~~~~~~~~~~~~~~~~~v 225 (351)
-.+||+.+ ++.. .+.+ .......+-.+-++|+.+.+|+.. ..+++|+... .....|...........+-
T Consensus 48 s~~yD~~t--n~~r-pl~v----~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWY 120 (243)
T PF07250_consen 48 SVEYDPNT--NTFR-PLTV----QTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWY 120 (243)
T ss_pred EEEEecCC--CcEE-eccC----CCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcc
Confidence 44788887 3322 1111 112223334677899999988752 4588888644 1111111111111233444
Q ss_pred EEEEeecCCCEEEEEeCCC-cEEEEcCCCccccccCccceEEecccc--ccccceeEEEEeeeCCCcEEEEecCCCeEEE
Q 048511 226 MDISWSRSSDYLLSVSHDQ-TTRVFAPWKNVASLMGENSWHEVARPQ--VHGHDINCVTIIQGKGNHRFVSGADEKVARV 302 (351)
Q Consensus 226 ~~v~~sp~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~v 302 (351)
-.+..-|||+.|+.|+.+. +..+|.-...... ...+..+.... ....--..+...| +|++|+.+..+.. |
T Consensus 121 pT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~---~~~~~~l~~~~~~~~~nlYP~~~llP--dG~lFi~an~~s~--i 193 (243)
T PF07250_consen 121 PTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPG---PVTLPFLSQTSDTLPNNLYPFVHLLP--DGNLFIFANRGSI--I 193 (243)
T ss_pred ccceECCCCCEEEEeCcCCCcccccCCccCCCC---ceeeecchhhhccCccccCceEEEcC--CCCEEEEEcCCcE--E
Confidence 5566678999998888764 3455554222100 01111111110 0111122455567 8999999887655 4
Q ss_pred EecCc-hhhhceeecc
Q 048511 303 FEAPL-SFLKTLNHAT 317 (351)
Q Consensus 303 w~~~~-~~~~~~~~~~ 317 (351)
||... +.++.|...-
T Consensus 194 ~d~~~n~v~~~lP~lP 209 (243)
T PF07250_consen 194 YDYKTNTVVRTLPDLP 209 (243)
T ss_pred EeCCCCeEEeeCCCCC
Confidence 67663 3445554433
No 454
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.35 E-value=20 Score=32.67 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=24.7
Q ss_pred ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC
Q 048511 116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK 157 (351)
Q Consensus 116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 157 (351)
.+...+|+|++. .| .. |+.-+.|+.||+||+..
T Consensus 167 tl~Qa~WHP~S~--~D-~h------L~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 167 TLKQAAWHPSSI--LD-PH------LVLLTSDNVIRIYSLSE 199 (741)
T ss_pred eeeeccccCCcc--CC-ce------EEEEecCcEEEEEecCC
Confidence 466788997653 23 33 77778899999999986
No 455
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=88.16 E-value=19 Score=32.24 Aligned_cols=85 Identities=15% Similarity=0.128 Sum_probs=49.1
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCC-----------cEEEEecCCCc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDK-----------VIRIWKLALRG 70 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg-----------~i~iwd~~~~~ 70 (351)
|+....|+++|+++ ++... ..+..- .-..+.|. ++++.|+....+. .|..|++.+..
T Consensus 146 G~e~~~l~v~Dl~t-g~~l~-d~i~~~--~~~~~~W~--------~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~ 213 (414)
T PF02897_consen 146 GSEWYTLRVFDLET-GKFLP-DGIENP--KFSSVSWS--------DDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQ 213 (414)
T ss_dssp TSSEEEEEEEETTT-TEEEE-EEEEEE--ESEEEEEC--------TTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-G
T ss_pred CCceEEEEEEECCC-CcCcC-Cccccc--ccceEEEe--------CCCCEEEEEEeCcccccccCCCCcEEEEEECCCCh
Confidence 55667899999999 74422 233321 12349999 7766665554332 37788887665
Q ss_pred cc--ceeecccccc-eeeeEeeecCCeEEec
Q 048511 71 SS--ANTQSTYRKE-VISLASYIEGPVLVAG 98 (351)
Q Consensus 71 ~~--~~~~~~~~~~-~~~~~~~~~~~~l~~~ 98 (351)
.. .......... ...+..+.+++++++.
T Consensus 214 ~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~ 244 (414)
T PF02897_consen 214 SEDELVFEEPDEPFWFVSVSRSKDGRYLFIS 244 (414)
T ss_dssp GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEE
T ss_pred HhCeeEEeecCCCcEEEEEEecCcccEEEEE
Confidence 43 2222222233 5677888999987763
No 456
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=87.97 E-value=0.34 Score=46.06 Aligned_cols=118 Identities=8% Similarity=0.010 Sum_probs=67.5
Q ss_pred ccccceEEEEEcC-CCCEEEEEeeCCeEEEEEccc--CcccCcccccccccccccEEEEEeec---CCCEEEEEeCCCcE
Q 048511 173 HSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVG--VDIDNWQPQKVPSGHFAAVMDISWSR---SSDYLLSVSHDQTT 246 (351)
Q Consensus 173 ~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~--~~~~~~~~~~~~~~~~~~v~~v~~sp---~~~~l~s~~~dg~i 246 (351)
+..+.+-.+.|.. +...+. -.-|.+.+||+.- +++...-.+.........+.-|.|.| +..++..+-.++.|
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i 207 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI 207 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence 4455666666632 212222 2236788998753 32211111222222233445566665 56677777778888
Q ss_pred EEEcCCCccccccCccceEEeccccccccceeEEE-----------EeeeCCCcEEEEecCCCeEEEEec
Q 048511 247 RVFAPWKNVASLMGENSWHEVARPQVHGHDINCVT-----------IIQGKGNHRFVSGADEKVARVFEA 305 (351)
Q Consensus 247 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~~~l~s~~~dg~v~vw~~ 305 (351)
++....... ...+..|+..++.++ .+| ||..|+++..||.+++|.+
T Consensus 208 ~lL~~~ra~-----------~~l~rsHs~~~~d~a~~~~g~~~l~~lSp--DGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 208 RLLNINRAL-----------RSLFRSHSQRVTDMAFFAEGVLKLASLSP--DGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eEeeechHH-----------HHHHHhcCCCcccHHHHhhchhhheeeCC--CCcEEEEeecCCccceeee
Confidence 887764433 122334655544444 356 8999999999999999985
No 457
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=87.95 E-value=17 Score=31.56 Aligned_cols=132 Identities=12% Similarity=0.127 Sum_probs=62.4
Q ss_pred CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCC------eEEEEEcccCcccCccccccccc-
Q 048511 148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGG------AFHLWRNVGVDIDNWQPQKVPSG- 220 (351)
Q Consensus 148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg------~i~~~d~~~~~~~~~~~~~~~~~- 220 (351)
..+.+||..+ ..+...-.+ ......-.+++ ..++++++.|+.+. .+..|++.... ..|..+..+..
T Consensus 168 ~~v~~YDp~t--~~W~~~~~~---p~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~-~~W~~~~~m~~~ 240 (346)
T TIGR03547 168 KNVLSYDPST--NQWRNLGEN---PFLGTAGSAIV-HKGNKLLLINGEIKPGLRTAEVKQYLFTGGK-LEWNKLPPLPPP 240 (346)
T ss_pred ceEEEEECCC--CceeECccC---CCCcCCCceEE-EECCEEEEEeeeeCCCccchheEEEEecCCC-ceeeecCCCCCC
Confidence 5689999988 666543221 11011111222 23567777776531 24456553221 12333333321
Q ss_pred ----ccccEEEEEeecCCCEEEEEeCC----------------------CcEEEEcCCCccccccCccceEEeccccccc
Q 048511 221 ----HFAAVMDISWSRSSDYLLSVSHD----------------------QTTRVFAPWKNVASLMGENSWHEVARPQVHG 274 (351)
Q Consensus 221 ----~~~~v~~v~~sp~~~~l~s~~~d----------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 274 (351)
+.+.....+...++++++.|+.+ ..+.+||..+. .|..+..+....
T Consensus 241 r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~--------~W~~~~~lp~~~ 312 (346)
T TIGR03547 241 KSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNG--------KWSKVGKLPQGL 312 (346)
T ss_pred CCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCC--------cccccCCCCCCc
Confidence 11111111223467777777753 14667887644 465554432211
Q ss_pred cceeEEEEeeeCCCcEEEEecCCC
Q 048511 275 HDINCVTIIQGKGNHRFVSGADEK 298 (351)
Q Consensus 275 ~~i~~~~~~~~~~~~~l~s~~~dg 298 (351)
-...+..- ++.+++.|+.+.
T Consensus 313 --~~~~~~~~--~~~iyv~GG~~~ 332 (346)
T TIGR03547 313 --AYGVSVSW--NNGVLLIGGENS 332 (346)
T ss_pred --eeeEEEEc--CCEEEEEeccCC
Confidence 11222333 688888888653
No 458
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=87.93 E-value=29 Score=34.18 Aligned_cols=106 Identities=15% Similarity=0.049 Sum_probs=59.6
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCC--C----CEEEEEeeCCeEEEEEcccCcccCccc
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD--G----RSILAHGYGGAFHLWRNVGVDIDNWQP 214 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~--~----~~l~~~~~dg~i~~~d~~~~~~~~~~~ 214 (351)
++.++.++.+...++.. +....... ......|.|+.++|- + +.+++|..+..+.+.-...... ..+
T Consensus 502 VvvA~~~~~l~y~~i~~--~~l~e~~~----~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~--~~~ 573 (1096)
T KOG1897|consen 502 VVVAGGGLALFYLEIED--GGLREVSH----KEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLI--LIT 573 (1096)
T ss_pred EEEecCccEEEEEEeec--cceeeeee----heecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcc--eee
Confidence 77777777777777765 33221111 133557899999974 2 2788888776655443322110 011
Q ss_pred cccccc--ccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCc
Q 048511 215 QKVPSG--HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKN 254 (351)
Q Consensus 215 ~~~~~~--~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~ 254 (351)
...+.+ -+..|.-.++--|..+|.++..||.+.-|-+...
T Consensus 574 ~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~ 615 (1096)
T KOG1897|consen 574 HEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDIN 615 (1096)
T ss_pred eeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcc
Confidence 111111 1223444455556789999999999876655443
No 459
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=87.84 E-value=18 Score=31.71 Aligned_cols=165 Identities=15% Similarity=0.157 Sum_probs=72.8
Q ss_pred ccceEEEEecCCCCCCCCCcccCCCceeEEeec---CCe-EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCE
Q 048511 114 EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM---DKT-MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRS 189 (351)
Q Consensus 114 ~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~---d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 189 (351)
...+.-+.|+| .+..+ |+-|.. +.. -|||-+++. +.....+.. ......+..=-|.|+|..
T Consensus 187 ~~wlgH~~fsP-----~dp~l------i~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~---~~~~e~~gHEfw~~DG~~ 251 (386)
T PF14583_consen 187 TDWLGHVQFSP-----TDPTL------IMFCHEGPWDLVDQRIWTINTD-GSNVKKVHR---RMEGESVGHEFWVPDGST 251 (386)
T ss_dssp SS-EEEEEEET-----TEEEE------EEEEE-S-TTTSS-SEEEEETT-S---EESS------TTEEEEEEEE-TTSS-
T ss_pred CccccCcccCC-----CCCCE------EEEeccCCcceeceEEEEEEcC-CCcceeeec---CCCCcccccccccCCCCE
Confidence 44567789998 66666 777654 332 467777653 332222221 112234555678999986
Q ss_pred EEEEee-----CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCC----------------cEEE
Q 048511 190 ILAHGY-----GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQ----------------TTRV 248 (351)
Q Consensus 190 l~~~~~-----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg----------------~i~v 248 (351)
|.--+. +..|.-+|+.+.+. . .+. ...+..-+--++||++++-=+.|. .|++
T Consensus 252 i~y~~~~~~~~~~~i~~~d~~t~~~---~---~~~-~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~ 324 (386)
T PF14583_consen 252 IWYDSYTPGGQDFWIAGYDPDTGER---R---RLM-EMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYL 324 (386)
T ss_dssp EEEEEEETTT--EEEEEE-TTT--E---E---EEE-EE-SEEEEEE-TTSSEEEEEE-------------------EEEE
T ss_pred EEEEeecCCCCceEEEeeCCCCCCc---e---EEE-eCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEE
Confidence 654332 34577777777532 1 111 111233445567888776433332 5667
Q ss_pred EcCCCcccccc--CccceEEecccccccc-ceeEEEEeeeCCCcEEE-EecCCCeEEEEec
Q 048511 249 FAPWKNVASLM--GENSWHEVARPQVHGH-DINCVTIIQGKGNHRFV-SGADEKVARVFEA 305 (351)
Q Consensus 249 wd~~~~~~~~~--~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~l~-s~~~dg~v~vw~~ 305 (351)
+++..+..... ....|.. ..++.. .=....|+| |+++++ ++...|...||-+
T Consensus 325 ~~~~~~~~~~l~~h~~sw~v---~~~~~q~~hPhp~FSP--Dgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 325 FDVEAGRFRKLARHDTSWKV---LDGDRQVTHPHPSFSP--DGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EETTTTEEEEEEE----------BTTBSSTT----EE-T--TSSEEEEEE-TTSS-EEEEE
T ss_pred eccccCceeeeeeccCccee---ecCCCccCCCCCccCC--CCCEEEEECCCCCCccEEEE
Confidence 77766542100 0001111 111111 014578999 777765 5557887777754
No 460
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=87.76 E-value=15 Score=31.86 Aligned_cols=113 Identities=12% Similarity=0.093 Sum_probs=56.2
Q ss_pred ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEE-Ee-ccccccccceEEEEEcCC---CCEE
Q 048511 116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVV-TV-GELSHSALGFYGGHWSPD---GRSI 190 (351)
Q Consensus 116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~-~~~~~~~~~i~~i~~~~~---~~~l 190 (351)
..+.|+|. |++++ |+ +...|.|++++ .. +.....+ .+ ............++++|+ ..+|
T Consensus 3 ~P~~~a~~------pdG~l------~v-~e~~G~i~~~~-~~--g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~l 66 (331)
T PF07995_consen 3 NPRSMAFL------PDGRL------LV-AERSGRIWVVD-KD--GSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYL 66 (331)
T ss_dssp SEEEEEEE------TTSCE------EE-EETTTEEEEEE-TT--TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EE
T ss_pred CceEEEEe------CCCcE------EE-EeCCceEEEEe-CC--CcCcceecccccccccccCCcccceeccccCCCCEE
Confidence 35789999 67775 55 56699999999 33 3321111 11 112234557899999994 3444
Q ss_pred EEEeeC---------CeEEEEEcccC--cccCcc-ccccccc---ccccEEEEEeecCCCEEEEEeCCC
Q 048511 191 LAHGYG---------GAFHLWRNVGV--DIDNWQ-PQKVPSG---HFAAVMDISWSRSSDYLLSVSHDQ 244 (351)
Q Consensus 191 ~~~~~d---------g~i~~~d~~~~--~~~~~~-~~~~~~~---~~~~v~~v~~sp~~~~l~s~~~dg 244 (351)
++.... ..|.-|..... .....+ .+..+.. .......|.|.|||.+.++.+..+
T Consensus 67 Yv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 67 YVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred EEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 443331 23444444332 100001 1111111 223456699999997766665443
No 461
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.55 E-value=9.2 Score=34.61 Aligned_cols=81 Identities=15% Similarity=0.210 Sum_probs=51.0
Q ss_pred ccceEEEEEcCCCCEEEEEeeCCeEEEEEcc----cCcccCcccc---------cccc--cccccEEEEEeecCC---CE
Q 048511 175 ALGFYGGHWSPDGRSILAHGYGGAFHLWRNV----GVDIDNWQPQ---------KVPS--GHFAAVMDISWSRSS---DY 236 (351)
Q Consensus 175 ~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~----~~~~~~~~~~---------~~~~--~~~~~v~~v~~sp~~---~~ 236 (351)
...|..+..++.|..++-++.+|.+.++=.+ .+..+..++. ..+. ...-.+..++|+|+. ..
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 3457788899999999999999976665321 1100000100 0011 112246678999975 55
Q ss_pred EEEEeCCCcEEEEcCCCcc
Q 048511 237 LLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 237 l~s~~~dg~i~vwd~~~~~ 255 (351)
|..-+.|..||+||.....
T Consensus 183 L~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEEEecCcEEEEEecCCcc
Confidence 7777789999999986654
No 462
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=87.44 E-value=16 Score=30.75 Aligned_cols=186 Identities=13% Similarity=0.117 Sum_probs=94.1
Q ss_pred eEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCC-----CcceEEEEEeccccccccceEEEEEcCCCC---
Q 048511 117 VYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKT-----TGIWMNVVTVGELSHSALGFYGGHWSPDGR--- 188 (351)
Q Consensus 117 v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~--- 188 (351)
-+.|+++ |.+.+ .++....+...+||.... ....+..+....-.......+.+.|+....
T Consensus 25 ~WGia~~------p~~~~------WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~v 92 (336)
T TIGR03118 25 AWGLSYR------PGGPF------WVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVV 92 (336)
T ss_pred cceeEec------CCCCE------EEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEE
Confidence 5689999 45555 677777888999998721 112222222111111234567777764332
Q ss_pred ---------EEEEEeeCCeEEEEEcccCcccCccccccccc-ccccE-EEEEeec--CCCEEEEEe-CCCcEEEEcCCCc
Q 048511 189 ---------SILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG-HFAAV-MDISWSR--SSDYLLSVS-HDQTTRVFAPWKN 254 (351)
Q Consensus 189 ---------~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-~~~~v-~~v~~sp--~~~~l~s~~-~dg~i~vwd~~~~ 254 (351)
.++.++.||+|.-|...-...........+.. ..+.| ..+++.. .+.+|..+. .+++|.|||-.-.
T Consensus 93 t~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~ 172 (336)
T TIGR03118 93 SGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR 172 (336)
T ss_pred cCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc
Confidence 35677899999999853321100000111211 12233 3455553 356665554 4789999986544
Q ss_pred cccccCccceEEecccc--------ccccc--eeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhceeeccc
Q 048511 255 VASLMGENSWHEVARPQ--------VHGHD--INCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLNHATF 318 (351)
Q Consensus 255 ~~~~~~~~~~~~~~~~~--------~~~~~--i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~ 318 (351)
..... ..+..-..+. ..+.. |+-..-.+ +.+.=+.|..-|.|-+||..+++++++.....
T Consensus 173 ~~~~~--g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~--~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~ 242 (336)
T TIGR03118 173 PPPLP--GSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDA--DRNDEVAGAGLGYVNVFTLNGQLLRRVASSGR 242 (336)
T ss_pred cccCC--CCccCCCCCCCCCCcceEEECCeEEEEEEecCC--cccccccCCCcceEEEEcCCCcEEEEeccCCc
Confidence 31100 0000000000 00000 11111122 23334456667899999999999998865443
No 463
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=87.18 E-value=20 Score=31.49 Aligned_cols=161 Identities=13% Similarity=0.091 Sum_probs=88.3
Q ss_pred CeEEEEeccCCCcceEEEEEecc--ccccccceEEEEE--cC-CCC-EEEEEeeCCeEEEEEcccCcc--cCcccccccc
Q 048511 148 KTMMIWQPEKTTGIWMNVVTVGE--LSHSALGFYGGHW--SP-DGR-SILAHGYGGAFHLWRNVGVDI--DNWQPQKVPS 219 (351)
Q Consensus 148 ~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~i~~i~~--~~-~~~-~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~ 219 (351)
.+|++|.+....+. +..+.-.. .......++.+|+ ++ ++. ++++...+|.+.-|.+..... -..++++++.
T Consensus 127 n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~ 205 (381)
T PF02333_consen 127 NSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK 205 (381)
T ss_dssp -EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE
T ss_pred CeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec
Confidence 46899987643233 22221000 0112234777777 33 344 666777889999998853211 1123456665
Q ss_pred cccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccc--cccccceeEEEEeeeCC--CcEEEEec
Q 048511 220 GHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARP--QVHGHDINCVTIIQGKG--NHRFVSGA 295 (351)
Q Consensus 220 ~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~--~~~l~s~~ 295 (351)
. .+.+..+.......+|+.+-++.-|.-|+.+.... .....+... ......|-.++.....+ +.+|+|.-
T Consensus 206 ~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~-----~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQ 279 (381)
T PF02333_consen 206 V-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGG-----NDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQ 279 (381)
T ss_dssp --SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC------S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEG
T ss_pred C-CCcceEEEEecccCCEEEecCccEEEEEecCCCCC-----CcceeeecccccccccCccceEEEecCCCCeEEEEEcC
Confidence 3 34788888888888999998888777777653331 111223222 12345678888764222 44556666
Q ss_pred CCCeEEEEecCc--hhhhceee
Q 048511 296 DEKVARVFEAPL--SFLKTLNH 315 (351)
Q Consensus 296 ~dg~v~vw~~~~--~~~~~~~~ 315 (351)
.++...||+..+ ..+..|.-
T Consensus 280 G~~sf~Vy~r~~~~~~~g~f~i 301 (381)
T PF02333_consen 280 GDNSFAVYDREGPNAYVGSFRI 301 (381)
T ss_dssp GGTEEEEEESSTT--EEEEEEE
T ss_pred CCCeEEEEecCCCCcccceEEe
Confidence 888999999874 44445543
No 464
>PLN02193 nitrile-specifier protein
Probab=86.65 E-value=25 Score=32.14 Aligned_cols=148 Identities=10% Similarity=0.138 Sum_probs=71.5
Q ss_pred eEEeecC-----CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-----CeEEEEEcccCccc
Q 048511 141 ILSASMD-----KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-----GAFHLWRNVGVDID 210 (351)
Q Consensus 141 l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~ 210 (351)
++.|+.+ +.+..||+.+ .++.....+...+..... .+++. -++++++.|+.+ ..+..||+.+.+
T Consensus 232 YvfGG~~~~~~~ndv~~yD~~t--~~W~~l~~~~~~P~~R~~-h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~-- 305 (470)
T PLN02193 232 YVFGGRDASRQYNGFYSFDTTT--NEWKLLTPVEEGPTPRSF-HSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK-- 305 (470)
T ss_pred EEECCCCCCCCCccEEEEECCC--CEEEEcCcCCCCCCCccc-eEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE--
Confidence 5666544 3577888887 666543221110111111 12222 245666666654 346778876653
Q ss_pred Cccccccc---ccccccEEEEEeecCCCEEEEEeCC----CcEEEEcCCCccccccCccceEEeccccc-c-ccceeEEE
Q 048511 211 NWQPQKVP---SGHFAAVMDISWSRSSDYLLSVSHD----QTTRVFAPWKNVASLMGENSWHEVARPQV-H-GHDINCVT 281 (351)
Q Consensus 211 ~~~~~~~~---~~~~~~v~~v~~sp~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~-~~~i~~~~ 281 (351)
|..+... ......- .++ .-++++++.++.+ ..+.+||+.+. .|..+..... . .....+++
T Consensus 306 -W~~~~~~~~~~~~R~~~-~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~--------~W~~~~~~g~~P~~R~~~~~~ 374 (470)
T PLN02193 306 -WFHCSTPGDSFSIRGGA-GLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQD--------KWTQVETFGVRPSERSVFASA 374 (470)
T ss_pred -EEeCCCCCCCCCCCCCc-EEE-EECCcEEEEECCCCCccCceEEEECCCC--------EEEEeccCCCCCCCcceeEEE
Confidence 2222111 1111111 122 2256777777655 45888988765 4666543210 1 11112222
Q ss_pred EeeeCCCcEEEEecCCC--------------eEEEEecCch
Q 048511 282 IIQGKGNHRFVSGADEK--------------VARVFEAPLS 308 (351)
Q Consensus 282 ~~~~~~~~~l~s~~~dg--------------~v~vw~~~~~ 308 (351)
.- ++.+++.|+.+. .+.++|+...
T Consensus 375 -~~--~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~ 412 (470)
T PLN02193 375 -AV--GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL 412 (470)
T ss_pred -EE--CCEEEEECCccCCccccccCccceeccEEEEEcCcC
Confidence 22 577888888532 3677777643
No 465
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=86.07 E-value=36 Score=33.34 Aligned_cols=73 Identities=8% Similarity=-0.049 Sum_probs=47.8
Q ss_pred ccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcc--------cccccc------cccccEEEEEeecCCCEEEEE
Q 048511 175 ALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQ--------PQKVPS------GHFAAVMDISWSRSSDYLLSV 240 (351)
Q Consensus 175 ~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~--------~~~~~~------~~~~~v~~v~~sp~~~~l~s~ 240 (351)
...|.++....-+..++....||+|.++|..+-+..... .+..+. ..-..+.-++|||.+..++.-
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 345677777777888999999999999998764211001 011110 011133457899999888888
Q ss_pred eCCCcEE
Q 048511 241 SHDQTTR 247 (351)
Q Consensus 241 ~~dg~i~ 247 (351)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 8888866
No 466
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.87 E-value=25 Score=31.40 Aligned_cols=105 Identities=11% Similarity=0.110 Sum_probs=67.0
Q ss_pred cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEE
Q 048511 113 HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILA 192 (351)
Q Consensus 113 h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 192 (351)
..++|.++.|+ +|.+. +|.--.+++|.+++....+...... .........|...+|..+ .-+|.
T Consensus 65 d~G~I~SIkFS------lDnki------lAVQR~~~~v~f~nf~~d~~~l~~~---~~ck~k~~~IlGF~W~~s-~e~A~ 128 (657)
T KOG2377|consen 65 DKGEIKSIKFS------LDNKI------LAVQRTSKTVDFCNFIPDNSQLEYT---QECKTKNANILGFCWTSS-TEIAF 128 (657)
T ss_pred CCCceeEEEec------cCcce------EEEEecCceEEEEecCCCchhhHHH---HHhccCcceeEEEEEecC-eeEEE
Confidence 35689999999 78888 9999999999999985422111111 111234456888999876 44554
Q ss_pred EeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEE
Q 048511 193 HGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLL 238 (351)
Q Consensus 193 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~ 238 (351)
....| +-+|-+.... ..++..+.|...|.--.|.++.+.+.
T Consensus 129 i~~~G-~e~y~v~pek----rslRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 129 ITDQG-IEFYQVLPEK----RSLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred EecCC-eEEEEEchhh----hhhhhhhhcccCccEEEEccccceEe
Confidence 44444 6666654332 23455556677777778888766543
No 467
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.71 E-value=3.8 Score=38.31 Aligned_cols=72 Identities=13% Similarity=0.191 Sum_probs=42.1
Q ss_pred CCCCEEEEEeeCCeEEEEEcccCc--ccCcc-----------ccccc--------ccccccEEEEEeec----CCCEEEE
Q 048511 185 PDGRSILAHGYGGAFHLWRNVGVD--IDNWQ-----------PQKVP--------SGHFAAVMDISWSR----SSDYLLS 239 (351)
Q Consensus 185 ~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~-----------~~~~~--------~~~~~~v~~v~~sp----~~~~l~s 239 (351)
++...++++..||.+......... ...+. .+..+ ......+..+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 466788888899988888776411 00000 00000 01123455566666 6789999
Q ss_pred EeCCCcEEEEcCCCccc
Q 048511 240 VSHDQTTRVFAPWKNVA 256 (351)
Q Consensus 240 ~~~dg~i~vwd~~~~~~ 256 (351)
.+.|+.+|+||+.++..
T Consensus 236 l~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EETTSEEEEEETTTTCE
T ss_pred EeCCCeEEEEECCCCeE
Confidence 99999999999999885
No 468
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=85.51 E-value=36 Score=32.83 Aligned_cols=103 Identities=15% Similarity=0.257 Sum_probs=61.9
Q ss_pred EEEEcCCCCEEEEEeeCC-----eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCc
Q 048511 180 GGHWSPDGRSILAHGYGG-----AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKN 254 (351)
Q Consensus 180 ~i~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~ 254 (351)
.+.|-|+|..+++-..|| .|.++..+.-+...+... .+....+..++|+-....++.+ ..+.+.+|-..+.
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr---~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNy 326 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLR---VGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNY 326 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEccCCcccCCcccc---CCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccce
Confidence 478999999999877554 466665544322111111 1233456667887766655544 5678999987655
Q ss_pred cccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecC
Q 048511 255 VASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD 296 (351)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~ 296 (351)
.|......+.. .+.-+.|+|..+..++.+++.
T Consensus 327 --------hWYLK~e~~ip--~~s~vkwhpe~~nTl~f~d~~ 358 (1243)
T COG5290 327 --------HWYLKVERQIP--GISYVKWHPEEKNTLLFRDGE 358 (1243)
T ss_pred --------EEEEEEeecCC--CcceeeeccccCcEEEEecCC
Confidence 46555444333 367789999544445555443
No 469
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=85.19 E-value=27 Score=31.10 Aligned_cols=115 Identities=12% Similarity=0.092 Sum_probs=64.9
Q ss_pred ccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc--ccccEEEEEeecCCCEEEEEeCCCcEEEEcCC
Q 048511 175 ALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG--HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPW 252 (351)
Q Consensus 175 ~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~--~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~ 252 (351)
...+..+.+.+++..++++ .+|.+.. ....+............. ....+.++.|.+++..+++| .+|.+.... .
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D 355 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-D 355 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-C
Confidence 4568899999998877655 5555433 232321100001111111 22358889999888766655 677766653 3
Q ss_pred CccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEE
Q 048511 253 KNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVF 303 (351)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw 303 (351)
.++ .|+.......-...++.+.|.+ +++.++ .+.+|.|.-|
T Consensus 356 ~G~-------tW~~~~~~~~~~~~ly~v~f~~--~~~g~~-~G~~G~il~~ 396 (398)
T PLN00033 356 GGK-------SWKRDKGADNIAANLYSVKFFD--DKKGFV-LGNDGVLLRY 396 (398)
T ss_pred CCc-------ceeEccccCCCCcceeEEEEcC--CCceEE-EeCCcEEEEe
Confidence 343 6766543223334588999876 454444 4577776554
No 470
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=84.75 E-value=6 Score=36.99 Aligned_cols=67 Identities=9% Similarity=0.131 Sum_probs=39.1
Q ss_pred eEEeecCCeEEEEeccC---CCcceEEEEEeccc-----------------cccccceEEEEEcC----CCCEEEEEeeC
Q 048511 141 ILSASMDKTMMIWQPEK---TTGIWMNVVTVGEL-----------------SHSALGFYGGHWSP----DGRSILAHGYG 196 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~~-----------------~~~~~~i~~i~~~~----~~~~l~~~~~d 196 (351)
|+.+..||.+....... ....+..... ... .........+++++ +..++++.+.|
T Consensus 161 l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~D 239 (547)
T PF11715_consen 161 LVVSLQDGGLLRLKRSSGDSDGSVWSEELF-NDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSRD 239 (547)
T ss_dssp EEEEESSS-EEEEEES----SSS-EE-----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEETT
T ss_pred EEEEECCCCeEEEECCcccCCCCeeEEEEe-CCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeCC
Confidence 88888999988888764 2122222111 110 01123455666666 67899999999
Q ss_pred CeEEEEEcccCc
Q 048511 197 GAFHLWRNVGVD 208 (351)
Q Consensus 197 g~i~~~d~~~~~ 208 (351)
+.+++||+.++.
T Consensus 240 ~~LRiW~l~t~~ 251 (547)
T PF11715_consen 240 HTLRIWSLETGQ 251 (547)
T ss_dssp SEEEEEETTTTC
T ss_pred CeEEEEECCCCe
Confidence 999999999874
No 471
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=84.30 E-value=5.5 Score=26.71 Aligned_cols=42 Identities=10% Similarity=0.054 Sum_probs=26.4
Q ss_pred EeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE
Q 048511 193 HGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV 240 (351)
Q Consensus 193 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~ 240 (351)
+..+|.+.-||..+++ ...+...-...+.|++++|+.+++.+
T Consensus 33 ~~~~GRll~ydp~t~~------~~vl~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKE------TTVLLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTTE------EEEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred CCCCcCEEEEECCCCe------EEEehhCCCccCeEEEcCCCCEEEEE
Confidence 4457889999998864 22222223456889999999987655
No 472
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=83.87 E-value=27 Score=30.10 Aligned_cols=121 Identities=17% Similarity=0.110 Sum_probs=67.6
Q ss_pred eEEEEecCCCCCCCCCcccCCCceeEEeecC------CeEEEEeccCCCcceEEEEEecc----------ccccccceEE
Q 048511 117 VYSVQWEPPSTAPSDGVSCQQPSSILSASMD------KTMMIWQPEKTTGIWMNVVTVGE----------LSHSALGFYG 180 (351)
Q Consensus 117 v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~----------~~~~~~~i~~ 180 (351)
..+|++. +++.+ +++.-.+ ..|..++.. +.....+.+.. ....+..+-.
T Consensus 87 ~Egi~~~------~~g~~------~is~E~~~~~~~~p~I~~~~~~---G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~ 151 (326)
T PF13449_consen 87 PEGIAVP------PDGSF------WISSEGGRTGGIPPRIRRFDLD---GRVIRRFPVPAAFLPDANGTSGRRNNRGFEG 151 (326)
T ss_pred hhHeEEe------cCCCE------EEEeCCccCCCCCCEEEEECCC---CcccceEccccccccccCccccccCCCCeEE
Confidence 4467774 67776 6666556 677777755 34433332111 1234567889
Q ss_pred EEEcCCCCEEEEEee-----CC---------eEEEEEcccCc--ccCccccccccc-----ccccEEEEEeecCCCEEEE
Q 048511 181 GHWSPDGRSILAHGY-----GG---------AFHLWRNVGVD--IDNWQPQKVPSG-----HFAAVMDISWSRSSDYLLS 239 (351)
Q Consensus 181 i~~~~~~~~l~~~~~-----dg---------~i~~~d~~~~~--~~~~~~~~~~~~-----~~~~v~~v~~sp~~~~l~s 239 (351)
++++|+|+.|+++.. |+ .++++...... ....+..+.+.. ....|..+.+-+++++|+-
T Consensus 152 la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 152 LAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred EEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 999999997766543 22 15555543321 001122333332 3567889999999987764
Q ss_pred Ee-----CCCcEEEEcCC
Q 048511 240 VS-----HDQTTRVFAPW 252 (351)
Q Consensus 240 ~~-----~dg~i~vwd~~ 252 (351)
=- ....++|+-+.
T Consensus 232 ER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 232 ERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred EccCCCCccceEEEEEEE
Confidence 32 23445555443
No 473
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=83.67 E-value=29 Score=30.18 Aligned_cols=43 Identities=14% Similarity=0.346 Sum_probs=22.9
Q ss_pred CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC
Q 048511 244 QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE 297 (351)
Q Consensus 244 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d 297 (351)
..+.+||..+. .|..+..+......-.+++. . ++.+++.|+.+
T Consensus 168 ~~v~~YDp~t~--------~W~~~~~~p~~~r~~~~~~~-~--~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTN--------QWRNLGENPFLGTAGSAIVH-K--GNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCC--------ceeECccCCCCcCCCceEEE-E--CCEEEEEeeee
Confidence 45778887655 47776544311111122322 3 57777877753
No 474
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.36 E-value=18 Score=27.78 Aligned_cols=32 Identities=6% Similarity=0.057 Sum_probs=26.6
Q ss_pred ceeEEEEee----eCCCcEEEEecCCCeEEEEecCc
Q 048511 276 DINCVTIIQ----GKGNHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 276 ~i~~~~~~~----~~~~~~l~s~~~dg~v~vw~~~~ 307 (351)
.+..++|+| ...+.+|++-..++.|.||...+
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 589999998 23467899999999999999764
No 475
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=82.63 E-value=38 Score=30.85 Aligned_cols=62 Identities=15% Similarity=0.153 Sum_probs=46.7
Q ss_pred CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCC
Q 048511 186 DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWK 253 (351)
Q Consensus 186 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~ 253 (351)
...++++++..|.|++||.-.. .....+.+-...|..+..+.+|+++++.|. ..+.+-|++-
T Consensus 572 esGyIa~as~kGDirLyDRig~-----rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~i 633 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGK-----RAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVPI 633 (776)
T ss_pred cCceEEEecCCCceeeehhhcc-----hhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEeccc
Confidence 4468999999999999997654 224455566778999999999998776664 4677777653
No 476
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=81.57 E-value=5.3 Score=21.58 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=18.1
Q ss_pred cccEEEEEeecCCCEEEEEe-CC--CcEEEE
Q 048511 222 FAAVMDISWSRSSDYLLSVS-HD--QTTRVF 249 (351)
Q Consensus 222 ~~~v~~v~~sp~~~~l~s~~-~d--g~i~vw 249 (351)
...-....|+|||+.|+-.+ .+ |.-.||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34566789999999876554 44 555555
No 477
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=80.63 E-value=6.9 Score=31.97 Aligned_cols=89 Identities=13% Similarity=0.176 Sum_probs=51.3
Q ss_pred EEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-C--CcEEEEcCCCccccccCccceEEecccccccc
Q 048511 199 FHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-D--QTTRVFAPWKNVASLMGENSWHEVARPQVHGH 275 (351)
Q Consensus 199 i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (351)
-.+||+.+++.+ ++.. .......+-.+-+||++|.+|+. + ..+++++...... ...|.+.........
T Consensus 48 s~~yD~~tn~~r---pl~v--~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~----~~~w~e~~~~m~~~R 118 (243)
T PF07250_consen 48 SVEYDPNTNTFR---PLTV--QTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDG----TCDWTESPNDMQSGR 118 (243)
T ss_pred EEEEecCCCcEE---eccC--CCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCC----CCCceECcccccCCC
Confidence 358888887532 2211 12223333467789999999875 2 4688888654110 124544432223334
Q ss_pred ceeEEEEeeeCCCcEEEEecCCC
Q 048511 276 DINCVTIIQGKGNHRFVSGADEK 298 (351)
Q Consensus 276 ~i~~~~~~~~~~~~~l~s~~~dg 298 (351)
.-......+ ||+.|+.|+.+.
T Consensus 119 WYpT~~~L~--DG~vlIvGG~~~ 139 (243)
T PF07250_consen 119 WYPTATTLP--DGRVLIVGGSNN 139 (243)
T ss_pred ccccceECC--CCCEEEEeCcCC
Confidence 445555666 899998888773
No 478
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=79.87 E-value=6.4 Score=21.49 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=17.4
Q ss_pred cCCCEEEEEe-CCCcEEEEcCCCcc
Q 048511 232 RSSDYLLSVS-HDQTTRVFAPWKNV 255 (351)
Q Consensus 232 p~~~~l~s~~-~dg~i~vwd~~~~~ 255 (351)
|++++|+++. .+++|.++|..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~ 25 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNK 25 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCe
Confidence 5677665544 57899999987665
No 479
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=79.55 E-value=0.34 Score=42.75 Aligned_cols=91 Identities=11% Similarity=0.134 Sum_probs=60.1
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG 220 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 220 (351)
++.+-..+.+.+||+.+..- ..+. .-..+.... +.|++....++.+...|.+.+|+..+.+ .....-.
T Consensus 90 avlAek~~piylwd~n~eyt---qqLE--~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR-----~iiv~Gk 157 (615)
T KOG2247|consen 90 AVLAEKTGPIYLWDVNSEYT---QQLE--SGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSR-----RIIVMGK 157 (615)
T ss_pred hhhhhcCCCeeechhhhhhH---HHHh--ccCcchHHH--HhhccCCccccccccccceEEEeccchh-----hhhhhcc
Confidence 55666788999999986211 1111 111222222 7889999999999999999999988763 2333333
Q ss_pred ccccEEEEEeecCCCEEEEEeCCC
Q 048511 221 HFAAVMDISWSRSSDYLLSVSHDQ 244 (351)
Q Consensus 221 ~~~~v~~v~~sp~~~~l~s~~~dg 244 (351)
|...++.+++.+.+. .+.++.|.
T Consensus 158 h~RRgtq~av~lEd~-vil~dcd~ 180 (615)
T KOG2247|consen 158 HQRRGTQIAVTLEDY-VILCDCDN 180 (615)
T ss_pred cccceeEEEecccce-eeecCcHH
Confidence 888999999998764 34444443
No 480
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=78.65 E-value=4.9 Score=19.99 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=19.7
Q ss_pred ceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511 276 DINCVTIIQGKGNHRFVSGADEKVARVFE 304 (351)
Q Consensus 276 ~i~~~~~~~~~~~~~l~s~~~dg~v~vw~ 304 (351)
.|.+++.. ..+++.+.+-+.+|+|.
T Consensus 3 ~i~aia~g----~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAG----DSWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEcc----CCEEEEEeCCCeEEecC
Confidence 46777775 46899999999999984
No 481
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=78.40 E-value=41 Score=28.53 Aligned_cols=167 Identities=13% Similarity=0.096 Sum_probs=88.1
Q ss_pred eeEEeecCCeEEEEeccCCCcce-EEEEEeccccccccceE-EEEEcC--CCCEEEEEe-eCCeEEEEEcccCcccCccc
Q 048511 140 SILSASMDKTMMIWQPEKTTGIW-MNVVTVGELSHSALGFY-GGHWSP--DGRSILAHG-YGGAFHLWRNVGVDIDNWQP 214 (351)
Q Consensus 140 ~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~i~-~i~~~~--~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~ 214 (351)
.++.+++||+|.-|......-.. ...+.+. ......|+ .+++.. .+.+|+.+. ..++|.+||-.-... ..
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d--~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~---~~ 176 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVD--ASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPP---PL 176 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEc--cCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccc---cC
Confidence 37888999999999965421100 1112111 11123343 455553 355666555 568999998654321 00
Q ss_pred ccccc-----cccc--cEEE------EEe---ecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccc--cccccc
Q 048511 215 QKVPS-----GHFA--AVMD------ISW---SRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARP--QVHGHD 276 (351)
Q Consensus 215 ~~~~~-----~~~~--~v~~------v~~---sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~ 276 (351)
--.+. .--. .|.. |.| .++.+.=+.+..-|.|-+||.... .+.++ .+.-..
T Consensus 177 ~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~-----------l~~r~as~g~LNa 245 (336)
T TIGR03118 177 PGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ-----------LLRRVASSGRLNA 245 (336)
T ss_pred CCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc-----------EEEEeccCCcccC
Confidence 00011 0000 0111 111 222222233444578999998543 22222 223344
Q ss_pred eeEEEEee----eCCCcEEEEecCCCeEEEEecC-chhhhceeeccccccc
Q 048511 277 INCVTIIQ----GKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATFQESS 322 (351)
Q Consensus 277 i~~~~~~~----~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~~~~ 322 (351)
.+.|+..| ...+.+|+---.||+|..||.. +.++..|....+....
T Consensus 246 PWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~ 296 (336)
T TIGR03118 246 PWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVK 296 (336)
T ss_pred CceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEE
Confidence 67777766 1246777777789999999975 8888777776554443
No 482
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=78.04 E-value=6.8 Score=37.05 Aligned_cols=68 Identities=10% Similarity=0.095 Sum_probs=42.1
Q ss_pred ccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEc
Q 048511 175 ALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFA 250 (351)
Q Consensus 175 ~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd 250 (351)
...++++.-+|.++.++.+..||.|++|+...... ..+.. ...+-..+.|...| |++...|+.+.-|.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q---ski~~---~~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ---SKICE---EAKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccch---hhhhh---hcCCccceeeeccc--eEEEeccchhheee
Confidence 34567788889999999999999999999855321 11111 12233445565544 44555555555554
No 483
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=76.51 E-value=7.8 Score=19.28 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=15.9
Q ss_pred EEEEEeecCCCEEEEEeCCCcEEEE
Q 048511 225 VMDISWSRSSDYLLSVSHDQTTRVF 249 (351)
Q Consensus 225 v~~v~~sp~~~~l~s~~~dg~i~vw 249 (351)
..+++.+++|+++++=+....|++|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4567777777766666656666554
No 484
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=76.03 E-value=18 Score=32.30 Aligned_cols=207 Identities=12% Similarity=0.071 Sum_probs=102.5
Q ss_pred CCeEEecCCceeEEEEEeccccccceEEEEecCCCCC---CCCCcccCC--CceeEEeecCCeEEEEeccCCCcceEEEE
Q 048511 92 GPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTA---PSDGVSCQQ--PSSILSASMDKTMMIWQPEKTTGIWMNVV 166 (351)
Q Consensus 92 ~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~---~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 166 (351)
...++.+..++.+.+.+.-..|+-+-...+|-|...- .+.++.-.+ ..+.+....+....++|.........-..
T Consensus 127 qp~~alglsngqv~v~qp~~s~t~p~pg~~Fp~g~~p~aLd~qgr~leh~~~~lalA~~~~~qf~~~~~t~~~~~L~g~~ 206 (733)
T COG4590 127 QPWFALGLSNGQVAVVQPQLSHTMPTPGREFPPGLEPLALDEQGRLLEHPLQQLALALTAEAQFATYDNTQQIQILRGDR 206 (733)
T ss_pred CceEEEeccCCeEEEEeccccccCCCCCccCCCCCCccccCcccCcccchHHHhhhccchhhHHHHhhhhhhhhhhhccc
Confidence 3466677788887776654445433333333321110 011111000 01144445555555555443111000000
Q ss_pred -----EeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc-ccccEE-EEEeecCCCEEEE
Q 048511 167 -----TVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG-HFAAVM-DISWSRSSDYLLS 239 (351)
Q Consensus 167 -----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-~~~~v~-~v~~sp~~~~l~s 239 (351)
.+..+......+..+-..||++.++.-+. ..+.++++.+......+.+..-.+ ....|+ .+..-..|.-|..
T Consensus 207 t~q~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv 285 (733)
T COG4590 207 TTQQEIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLV 285 (733)
T ss_pred CchhhhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEE
Confidence 00012234456777889999998887665 778999987754321111111111 001222 1222335566788
Q ss_pred EeCCCcEEEE-cCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 240 VSHDQTTRVF-APWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 240 ~~~dg~i~vw-d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
++.||-|.-| |.+... ...+..+..++....++..+.-.. +.+-+++-+..|.+.++...
T Consensus 286 ~~~dG~vsQWFdvr~~~-----~p~l~h~R~f~l~pa~~~~l~pe~--~rkgF~~l~~~G~L~~f~st 346 (733)
T COG4590 286 VHEDGLVSQWFDVRRDG-----QPHLNHIRNFKLAPAEVQFLLPET--NRKGFYSLYRNGTLQSFYST 346 (733)
T ss_pred EcCCCceeeeeeeecCC-----CCcceeeeccccCcccceeecccc--ccceEEEEcCCCceeeeecc
Confidence 8899988776 554443 123344444444444454444333 56677788888888887643
No 485
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=75.49 E-value=62 Score=29.13 Aligned_cols=31 Identities=13% Similarity=0.167 Sum_probs=25.4
Q ss_pred cceEEEEEcCCCCEEEEEeeCCeEEEEEccc
Q 048511 176 LGFYGGHWSPDGRSILAHGYGGAFHLWRNVG 206 (351)
Q Consensus 176 ~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~ 206 (351)
..|.+++..+..+.+++...++.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999889999999999999999964
No 486
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=74.83 E-value=91 Score=30.79 Aligned_cols=128 Identities=13% Similarity=0.098 Sum_probs=72.4
Q ss_pred ccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcc------------------c-ccccccccccEEEEEeecCCC
Q 048511 175 ALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQ------------------P-QKVPSGHFAAVMDISWSRSSD 235 (351)
Q Consensus 175 ~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~------------------~-~~~~~~~~~~v~~v~~sp~~~ 235 (351)
...|.|+.-+.+|+.+++|..| +.+|.+.-.....|. | ...+.-|...|..++......
T Consensus 181 GinV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~vDqsRg 258 (1263)
T COG5308 181 GINVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAVDQSRG 258 (1263)
T ss_pred CceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheeeccccc
Confidence 3468888888899999988887 777876432111110 0 011123456677788777766
Q ss_pred EEEEEeCCCcEEEEcCCCcccccc----------------------CccceE---EeccccccccceeEEEEeeeCCCcE
Q 048511 236 YLLSVSHDQTTRVFAPWKNVASLM----------------------GENSWH---EVARPQVHGHDINCVTIIQGKGNHR 290 (351)
Q Consensus 236 ~l~s~~~dg~i~vwd~~~~~~~~~----------------------~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~ 290 (351)
.|.+-+....|+-|.+........ ..+..+ .+.........+.+++... .|..
T Consensus 259 ~ly~Lr~kS~Vray~itkngl~gpv~i~~a~i~r~a~~lna~sPlL~pr~~kIvkIvsi~~~Enn~lflvaiT~--tgcR 336 (1263)
T COG5308 259 LLYVLRKKSAVRAYSITKNGLVGPVFISFASIDRNAAILNATSPLLEPRMYKIVKIVSIPAYENNQLFLVAITS--TGCR 336 (1263)
T ss_pred ceeeecccceeeeEeeecccccccccccHHHHHhHHhhhccCCcccCCceEEEEEEeecccccccceEEEEEec--cceE
Confidence 777777777888887654432110 011111 1111122233456666665 5666
Q ss_pred EEEecCCCeEEEEecC
Q 048511 291 FVSGADEKVARVFEAP 306 (351)
Q Consensus 291 l~s~~~dg~v~vw~~~ 306 (351)
+..-|.-|.+.+.+++
T Consensus 337 lYf~Gs~gr~si~alk 352 (1263)
T COG5308 337 LYFDGSRGRVSIVALK 352 (1263)
T ss_pred EEEecCccceeeeccc
Confidence 6666666677777655
No 487
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=71.94 E-value=62 Score=27.57 Aligned_cols=129 Identities=10% Similarity=0.043 Sum_probs=72.0
Q ss_pred ceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccc-----cEEEEEeecCCCEEEEEeCCCcEEEEcC
Q 048511 177 GFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFA-----AVMDISWSRSSDYLLSVSHDQTTRVFAP 251 (351)
Q Consensus 177 ~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~-----~v~~v~~sp~~~~l~s~~~dg~i~vwd~ 251 (351)
-|.++...++|.+|+++-.-..|.+.|.+++++ +-.+.+... .-...++-.+-+++-.+..++.|.|||-
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I-----~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKI-----IWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcE-----EEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 377888888999999988888999998877642 333333211 0011233333344444456778888876
Q ss_pred CCcccccc------------CccceEEeccccccccc-----eeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhc
Q 048511 252 WKNVASLM------------GENSWHEVARPQVHGHD-----INCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKT 312 (351)
Q Consensus 252 ~~~~~~~~------------~~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~ 312 (351)
........ .......+.....+... --++...| +|+.|++=+..+.+.-++..|+.+..
T Consensus 220 ~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~--nGn~li~~g~~g~~~E~~~~G~vv~~ 295 (299)
T PF14269_consen 220 ANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLP--NGNVLIGWGNNGRISEFTPDGEVVWE 295 (299)
T ss_pred CCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECC--CCCEEEecCCCceEEEECCCCCEEEE
Confidence 32110000 01111111111111111 22334455 78999999999999888888876544
No 488
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=71.25 E-value=1.1e+02 Score=30.18 Aligned_cols=80 Identities=19% Similarity=0.237 Sum_probs=51.5
Q ss_pred cceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCccc---Ccccccccccc-------cccEEEEEeecCCCEEEEEeCCC
Q 048511 176 LGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVDID---NWQPQKVPSGH-------FAAVMDISWSRSSDYLLSVSHDQ 244 (351)
Q Consensus 176 ~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~---~~~~~~~~~~~-------~~~v~~v~~sp~~~~l~s~~~dg 244 (351)
.+...++|+| +...||+....|...||++...... .+.......++ .+....+.|.++.+.|+.++ ..
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~ 224 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RS 224 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CC
Confidence 4577899998 4568999999999999999221111 11111111111 12334788988877887765 45
Q ss_pred cEEEEcCCCccc
Q 048511 245 TTRVFAPWKNVA 256 (351)
Q Consensus 245 ~i~vwd~~~~~~ 256 (351)
.+.++|+.+...
T Consensus 225 ~l~~~d~~~~~~ 236 (765)
T PF10214_consen 225 KLMLIDFESNWQ 236 (765)
T ss_pred ceEEEECCCCCc
Confidence 788999987653
No 489
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=70.90 E-value=74 Score=30.99 Aligned_cols=73 Identities=12% Similarity=0.049 Sum_probs=45.9
Q ss_pred ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEE
Q 048511 114 EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAH 193 (351)
Q Consensus 114 ~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 193 (351)
..+|.++++. .| ++.++.+|.|.++...+....+ ... ....+...|+++....++-+++.+
T Consensus 626 ~lPvrsla~~------ed---------~~was~gG~V~vi~~tt~~~~~--~le--ahqee~~~Vthm~~~~~gVwvafa 686 (925)
T KOG3522|consen 626 SLPVRSLAFQ------ED---------FVWASEGGCVHVIPSTTFIRSW--DLE--AHQEEAHSVTHMLYLDNGVWVAFA 686 (925)
T ss_pred Cccccchhhh------hc---------eeeeecCCceEEEechhccccc--hhH--HHHhhcceEEEEEeeCCceEEEEc
Confidence 4577788777 34 7788899999999988732221 111 122455678899887766555554
Q ss_pred eeCCeEEEEEccc
Q 048511 194 GYGGAFHLWRNVG 206 (351)
Q Consensus 194 ~~dg~i~~~d~~~ 206 (351)
+.| .+++++.++
T Consensus 687 sG~-~~rlfhtet 698 (925)
T KOG3522|consen 687 SGD-EERLFHTET 698 (925)
T ss_pred CCC-EEEEecccc
Confidence 444 455555444
No 490
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.70 E-value=1e+02 Score=29.66 Aligned_cols=38 Identities=8% Similarity=0.041 Sum_probs=28.4
Q ss_pred cceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhcee
Q 048511 275 HDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLN 314 (351)
Q Consensus 275 ~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~ 314 (351)
..+..+.++| +.++|+--..+|.|.+-+.+ .+.+..++
T Consensus 217 ~~~~ki~VS~--n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 217 SSVVKISVSP--NRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ceEEEEEEcC--CcceEEEEecCCcEEEEecchhhhhhccC
Confidence 4477888988 88999998899998888776 44444443
No 491
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=69.85 E-value=1.2e+02 Score=29.92 Aligned_cols=28 Identities=7% Similarity=-0.108 Sum_probs=22.1
Q ss_pred ccEEEEeeCCCcEEEEecCCCcccceee
Q 048511 49 SILLVSSSQDKVIRIWKLALRGSSANTQ 76 (351)
Q Consensus 49 ~~~l~t~~~dg~i~iwd~~~~~~~~~~~ 76 (351)
+..|+.++.++.|.-.|..+++.+....
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d 221 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFD 221 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEc
Confidence 5577778888899999999888776654
No 492
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=69.26 E-value=57 Score=26.03 Aligned_cols=20 Identities=10% Similarity=0.174 Sum_probs=14.3
Q ss_pred ccccEEEEEeecCC-CEEEEE
Q 048511 221 HFAAVMDISWSRSS-DYLLSV 240 (351)
Q Consensus 221 ~~~~v~~v~~sp~~-~~l~s~ 240 (351)
+..-.+.+++.|++ ++++||
T Consensus 227 ~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 227 NDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ccccccceeecCcCCeEEEec
Confidence 45567889999987 455555
No 493
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=68.80 E-value=20 Score=23.90 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=22.6
Q ss_pred cEEEEEeecCCCEEEEEe-CCCcEEEEcCC
Q 048511 224 AVMDISWSRSSDYLLSVS-HDQTTRVFAPW 252 (351)
Q Consensus 224 ~v~~v~~sp~~~~l~s~~-~dg~i~vwd~~ 252 (351)
..+.|.++|++++|..++ ..+.|++|...
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 457789999999887665 47889998764
No 494
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=66.46 E-value=27 Score=33.73 Aligned_cols=148 Identities=11% Similarity=0.081 Sum_probs=80.7
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG 220 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 220 (351)
+..|+.++.+.|+.-....... ... .........+.++.+++. .+..|..||++-.|-..-.......+-..+..
T Consensus 550 ic~gtq~ssisissss~~s~ke-~~~--~~~spe~~~v~~l~~ss~--Slgagl~dgt~a~y~rap~gSwd~ep~~~~~~ 624 (925)
T KOG3522|consen 550 ICLGTQTSSISISSSSLDSIKE-VTS--EPPSPEHESVKLLLFSSG--SLGAGLIDGTLAVYGRAPSGSWDGEPNISIPT 624 (925)
T ss_pred ccccCccceeEEeeccCCcccc-eec--cCCCCchhhhhhhhcccc--ccccCccCCccccccCCCCCCCCCCCcccccc
Confidence 7888899999998766311111 111 111122334556665543 35556666666665332111000011222223
Q ss_pred ccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeE
Q 048511 221 HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVA 300 (351)
Q Consensus 221 ~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v 300 (351)
-..+|.+.++..| ++-++.+|.|.++...+... .| .....+.|...|+++.... .+-+++-.+.| .+
T Consensus 625 g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~------~~-~leahqee~~~Vthm~~~~--~gVwvafasG~-~~ 691 (925)
T KOG3522|consen 625 GSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIR------SW-DLEAHQEEAHSVTHMLYLD--NGVWVAFASGD-EE 691 (925)
T ss_pred CCccccchhhhhc---eeeeecCCceEEEechhccc------cc-hhHHHHhhcceEEEEEeeC--CceEEEEcCCC-EE
Confidence 3456777777655 44567899999998876541 22 2223335667799999987 56555555555 55
Q ss_pred EEEecC
Q 048511 301 RVFEAP 306 (351)
Q Consensus 301 ~vw~~~ 306 (351)
++++..
T Consensus 692 rlfhte 697 (925)
T KOG3522|consen 692 RLFHTE 697 (925)
T ss_pred EEeccc
Confidence 555543
No 495
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=65.48 E-value=1.4e+02 Score=29.33 Aligned_cols=21 Identities=10% Similarity=0.066 Sum_probs=18.5
Q ss_pred EEEEEeCCCcEEEEcCCCccc
Q 048511 236 YLLSVSHDQTTRVFAPWKNVA 256 (351)
Q Consensus 236 ~l~s~~~dg~i~vwd~~~~~~ 256 (351)
.++.++.+|.++++|.++++.
T Consensus 461 ~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 461 ALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred EEEEECCCCEEEEEECCCCCE
Confidence 788899999999999988863
No 496
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=65.28 E-value=1.1e+02 Score=28.10 Aligned_cols=131 Identities=10% Similarity=0.103 Sum_probs=62.4
Q ss_pred eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCC------eEEEEEcccCcccCccccccccc-c
Q 048511 149 TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGG------AFHLWRNVGVDIDNWQPQKVPSG-H 221 (351)
Q Consensus 149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg------~i~~~d~~~~~~~~~~~~~~~~~-~ 221 (351)
.+.++|+.+ ..+.........+........+++. ..+++.|+.+. .|..+|+.+.+- ..+..... .
T Consensus 89 dl~~~d~~~--~~w~~~~~~g~~p~~r~g~~~~~~~--~~l~lfGG~~~~~~~~~~l~~~d~~t~~W---~~l~~~~~~P 161 (482)
T KOG0379|consen 89 DLYVLDLES--QLWTKPAATGDEPSPRYGHSLSAVG--DKLYLFGGTDKKYRNLNELHSLDLSTRTW---SLLSPTGDPP 161 (482)
T ss_pred eeEEeecCC--cccccccccCCCCCcccceeEEEEC--CeEEEEccccCCCCChhheEeccCCCCcE---EEecCcCCCC
Confidence 366677665 4443333322222222233334443 45666677774 788888887652 22222221 1
Q ss_pred cccEEEEEeecCCCEEEEEeC------CCcEEEEcCCCccccccCccceEEecccccccc--ceeEEEEeeeCCCcEEEE
Q 048511 222 FAAVMDISWSRSSDYLLSVSH------DQTTRVFAPWKNVASLMGENSWHEVARPQVHGH--DINCVTIIQGKGNHRFVS 293 (351)
Q Consensus 222 ~~~v~~v~~sp~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~s 293 (351)
.......+..-+.++++.|+. ...+.++|+.+.. |..+........ .-..++.. ++++++.
T Consensus 162 ~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~--------W~~~~~~g~~P~pR~gH~~~~~---~~~~~v~ 230 (482)
T KOG0379|consen 162 PPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETST--------WSELDTQGEAPSPRYGHAMVVV---GNKLLVF 230 (482)
T ss_pred CCcccceEEEECCEEEEECCccCcccceeeeeeecccccc--------ceecccCCCCCCCCCCceEEEE---CCeEEEE
Confidence 111111222223444555553 3457888887653 655543321111 12233333 4677777
Q ss_pred ecCC
Q 048511 294 GADE 297 (351)
Q Consensus 294 ~~~d 297 (351)
++.+
T Consensus 231 gG~~ 234 (482)
T KOG0379|consen 231 GGGD 234 (482)
T ss_pred eccc
Confidence 7766
No 497
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=65.18 E-value=20 Score=34.13 Aligned_cols=77 Identities=9% Similarity=0.096 Sum_probs=50.1
Q ss_pred cccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEE
Q 048511 222 FAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVAR 301 (351)
Q Consensus 222 ~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~ 301 (351)
...++++.-+|.+.-++.+..||+|++|+...+..+ .+.... .+-..+.|.. .-|++...|..+.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qs--------ki~~~~---~p~~nlv~tn----hgl~~~tsdrr~l 78 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQS--------KICEEA---KPKENLVFTN----HGLVTATSDRRAL 78 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchh--------hhhhhc---CCccceeeec----cceEEEeccchhh
Confidence 445788888999999999999999999998655421 122221 2234455643 2356666777777
Q ss_pred EEecCchhhhce
Q 048511 302 VFEAPLSFLKTL 313 (351)
Q Consensus 302 vw~~~~~~~~~~ 313 (351)
-|.-+|-..+.|
T Consensus 79 a~~~dgvvqqqf 90 (1636)
T KOG3616|consen 79 AWKEDGVVQQQF 90 (1636)
T ss_pred eeeccCcchhhc
Confidence 787666444333
No 498
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=64.25 E-value=23 Score=34.48 Aligned_cols=82 Identities=10% Similarity=0.053 Sum_probs=53.1
Q ss_pred ccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccc-----------cC---ccceEEeccccccccceeEEEEeeeCCC
Q 048511 223 AAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASL-----------MG---ENSWHEVARPQVHGHDINCVTIIQGKGN 288 (351)
Q Consensus 223 ~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~-----------~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 288 (351)
-.|.++.-+.+|+.+++|-.| +.||.+.-..... +. .........+..|+..|..++... ..
T Consensus 182 inV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~vDq--sR 257 (1263)
T COG5308 182 INVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAVDQ--SR 257 (1263)
T ss_pred ceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheeecc--cc
Confidence 457888777789999988777 6777653322100 00 000111222345667789999987 67
Q ss_pred cEEEEecCCCeEEEEecCch
Q 048511 289 HRFVSGADEKVARVFEAPLS 308 (351)
Q Consensus 289 ~~l~s~~~dg~v~vw~~~~~ 308 (351)
.+|.+-+.-..||-|.+..+
T Consensus 258 g~ly~Lr~kS~Vray~itkn 277 (1263)
T COG5308 258 GLLYVLRKKSAVRAYSITKN 277 (1263)
T ss_pred cceeeecccceeeeEeeecc
Confidence 78888888899999987643
No 499
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.96 E-value=1.6e+02 Score=30.10 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=24.0
Q ss_pred ceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecC
Q 048511 31 WIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLA 67 (351)
Q Consensus 31 ~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~ 67 (351)
....++|+ +...++|.+...|.|+++-..
T Consensus 37 ~~~~~afD--------~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 37 TPSALAFD--------PTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCcceeec--------cccceEEEEEecccEEEeccc
Confidence 45567888 778899999999999998754
No 500
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=63.74 E-value=15 Score=18.73 Aligned_cols=24 Identities=8% Similarity=-0.165 Sum_probs=18.9
Q ss_pred cEEEEeeCCCcEEEEecCCCcccc
Q 048511 50 ILLVSSSQDKVIRIWKLALRGSSA 73 (351)
Q Consensus 50 ~~l~t~~~dg~i~iwd~~~~~~~~ 73 (351)
..++.++.+|.+...|..+++...
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEE
Confidence 367778889999999998876543
Done!