Query 048511
Match_columns 351
No_of_seqs 501 out of 1283
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 17:40:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048511.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048511hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 1.5E-44 5.3E-49 308.9 31.1 260 1-306 53-320 (321)
2 1vyh_C Platelet-activating fac 100.0 3.8E-43 1.3E-47 310.5 28.9 257 1-305 125-409 (410)
3 1got_B GT-beta; complex (GTP-b 100.0 3E-41 1E-45 291.1 31.3 256 1-304 72-340 (340)
4 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.5E-40 8.4E-45 285.9 32.8 276 1-306 33-334 (345)
5 4gqb_B Methylosome protein 50; 100.0 1.4E-40 4.9E-45 286.6 30.3 228 1-307 98-331 (344)
6 2ynn_A Coatomer subunit beta'; 100.0 2.5E-40 8.6E-45 280.9 30.9 254 20-317 4-270 (304)
7 2ynn_A Coatomer subunit beta'; 100.0 7.7E-40 2.6E-44 277.9 32.0 259 1-306 30-301 (304)
8 2hes_X YDR267CP; beta-propelle 100.0 2.9E-40 1E-44 283.7 28.8 271 1-306 29-327 (330)
9 2pbi_B Guanine nucleotide-bind 100.0 1.7E-39 5.9E-44 281.5 31.6 259 1-304 81-354 (354)
10 3iz6_a 40S ribosomal protein R 100.0 2.2E-40 7.4E-45 290.1 26.2 265 1-307 83-375 (380)
11 3frx_A Guanine nucleotide-bind 100.0 2.2E-39 7.6E-44 276.9 30.5 268 1-306 35-316 (319)
12 1vyh_C Platelet-activating fac 100.0 1.6E-39 5.3E-44 287.4 30.4 252 22-318 101-381 (410)
13 3ow8_A WD repeat-containing pr 100.0 1.3E-39 4.4E-44 278.4 28.2 258 20-317 23-290 (321)
14 1nr0_A Actin interacting prote 100.0 2.5E-39 8.4E-44 300.3 31.0 266 1-306 165-566 (611)
15 2xzm_R RACK1; ribosome, transl 100.0 1.1E-38 3.8E-43 275.4 32.9 272 1-306 44-339 (343)
16 3iz6_a 40S ribosomal protein R 100.0 1.6E-39 5.5E-44 284.5 26.4 268 8-313 48-336 (380)
17 1got_B GT-beta; complex (GTP-b 100.0 9.4E-39 3.2E-43 275.5 30.8 255 20-318 46-313 (340)
18 2pbi_B Guanine nucleotide-bind 100.0 2.1E-38 7.1E-43 274.7 32.3 255 20-317 55-326 (354)
19 1nr0_A Actin interacting prote 100.0 7.3E-39 2.5E-43 297.1 31.2 268 5-309 38-358 (611)
20 4g56_B MGC81050 protein; prote 100.0 4.6E-39 1.6E-43 279.1 26.9 258 5-306 69-342 (357)
21 2ymu_A WD-40 repeat protein; u 100.0 5.4E-38 1.8E-42 289.7 31.8 265 1-318 279-550 (577)
22 2ymu_A WD-40 repeat protein; u 100.0 7.7E-38 2.6E-42 288.6 31.2 251 1-304 320-577 (577)
23 3fm0_A Protein CIAO1; WDR39,SG 100.0 9.9E-38 3.4E-42 269.6 29.6 259 18-306 4-282 (345)
24 4ery_A WD repeat-containing pr 100.0 1.3E-37 4.5E-42 265.1 29.8 259 1-306 40-311 (312)
25 1k8k_C P40, ARP2/3 complex 41 100.0 4.6E-37 1.6E-41 267.9 32.1 273 1-306 25-360 (372)
26 2pm7_B Protein transport prote 100.0 5.5E-37 1.9E-41 259.4 31.2 253 23-306 3-284 (297)
27 1erj_A Transcriptional repress 100.0 3.6E-37 1.2E-41 270.8 30.9 268 4-306 83-388 (393)
28 1sq9_A Antiviral protein SKI8; 100.0 2.4E-37 8.3E-42 272.2 28.6 263 1-306 31-394 (397)
29 2hes_X YDR267CP; beta-propelle 100.0 4.7E-37 1.6E-41 263.8 29.6 252 20-306 5-279 (330)
30 2j04_B YDR362CP, TAU91; beta p 100.0 1.5E-37 5.1E-42 280.9 27.1 278 1-308 178-518 (524)
31 4ery_A WD repeat-containing pr 100.0 2E-36 7E-41 257.8 30.3 257 19-319 13-281 (312)
32 4aow_A Guanine nucleotide-bind 100.0 3.5E-36 1.2E-40 259.1 31.2 270 1-306 56-336 (340)
33 3dm0_A Maltose-binding peripla 100.0 1.6E-36 5.6E-41 285.6 31.4 264 1-306 400-692 (694)
34 3zwl_B Eukaryotic translation 100.0 5.8E-36 2E-40 260.3 32.0 258 1-307 49-346 (369)
35 4gqb_B Methylosome protein 50; 100.0 8.5E-37 2.9E-41 263.0 26.4 246 26-317 27-299 (344)
36 3bg1_A Protein SEC13 homolog; 100.0 3.1E-37 1.1E-41 263.2 21.6 242 1-306 30-292 (316)
37 4e54_B DNA damage-binding prot 100.0 4.3E-37 1.5E-41 274.0 22.9 264 1-306 137-429 (435)
38 4gga_A P55CDC, cell division c 100.0 3.9E-36 1.3E-40 266.6 28.9 259 3-306 122-394 (420)
39 4g56_B MGC81050 protein; prote 100.0 2.3E-36 8E-41 262.1 26.7 246 25-313 38-308 (357)
40 2pm9_A Protein WEB1, protein t 100.0 1.9E-36 6.7E-41 268.0 26.7 264 3-306 42-336 (416)
41 4ggc_A P55CDC, cell division c 100.0 6.6E-36 2.3E-40 255.0 29.0 259 3-306 42-314 (318)
42 3dwl_C Actin-related protein 2 100.0 4.1E-36 1.4E-40 262.6 28.0 279 1-305 28-377 (377)
43 3ei3_B DNA damage-binding prot 100.0 1E-35 3.4E-40 260.8 30.2 259 1-307 91-382 (383)
44 1erj_A Transcriptional repress 100.0 1.1E-35 3.9E-40 261.3 30.5 275 8-318 42-353 (393)
45 1gxr_A ESG1, transducin-like e 100.0 2E-35 7E-40 253.8 31.1 256 2-305 69-335 (337)
46 3frx_A Guanine nucleotide-bind 100.0 7.4E-36 2.5E-40 255.1 28.1 223 18-315 6-236 (319)
47 3i2n_A WD repeat-containing pr 100.0 1.1E-35 3.8E-40 257.6 29.5 269 5-306 43-352 (357)
48 3odt_A Protein DOA1; ubiquitin 100.0 2.8E-35 9.7E-40 250.4 31.1 255 1-307 34-296 (313)
49 4aez_A CDC20, WD repeat-contai 100.0 1.4E-35 4.7E-40 261.6 30.0 265 1-313 108-387 (401)
50 2xzm_R RACK1; ribosome, transl 100.0 5.8E-35 2E-39 252.2 30.0 249 19-306 11-284 (343)
51 3k26_A Polycomb protein EED; W 100.0 1.1E-35 3.9E-40 258.3 23.6 276 2-306 40-365 (366)
52 3v7d_B Cell division control p 100.0 1.3E-34 4.4E-39 260.2 30.7 257 1-312 137-427 (464)
53 1r5m_A SIR4-interacting protei 100.0 6.3E-35 2.2E-39 258.6 27.4 266 1-307 125-425 (425)
54 4a11_B DNA excision repair pro 100.0 6E-35 2E-39 257.5 25.8 279 5-312 22-371 (408)
55 3f3f_A Nucleoporin SEH1; struc 100.0 1.3E-34 4.3E-39 249.6 26.5 267 23-316 5-347 (351)
56 4aow_A Guanine nucleotide-bind 100.0 4.4E-34 1.5E-38 246.0 29.8 266 3-314 11-294 (340)
57 3jrp_A Fusion protein of prote 100.0 4.1E-34 1.4E-38 249.7 29.4 253 21-306 3-286 (379)
58 2pm7_B Protein transport prote 100.0 4E-34 1.4E-38 241.9 27.7 236 1-254 26-286 (297)
59 2pm9_A Protein WEB1, protein t 100.0 2.3E-35 8E-40 261.0 20.4 273 1-306 84-413 (416)
60 3gre_A Serine/threonine-protei 100.0 1.6E-34 5.4E-39 257.6 25.8 273 10-317 47-370 (437)
61 1r5m_A SIR4-interacting protei 100.0 2.4E-34 8.3E-39 254.8 26.2 257 1-306 63-360 (425)
62 3vl1_A 26S proteasome regulato 100.0 5.3E-34 1.8E-38 252.8 27.1 262 1-307 73-365 (420)
63 3vl1_A 26S proteasome regulato 100.0 5.4E-34 1.8E-38 252.7 27.1 275 1-307 114-419 (420)
64 1gxr_A ESG1, transducin-like e 100.0 1.3E-33 4.5E-38 242.5 28.6 241 23-310 45-300 (337)
65 4h5i_A Guanine nucleotide-exch 100.0 1.3E-33 4.3E-38 245.6 28.3 232 2-308 100-344 (365)
66 3bg1_A Protein SEC13 homolog; 100.0 1.9E-34 6.4E-39 246.1 22.2 217 24-307 8-247 (316)
67 2aq5_A Coronin-1A; WD40 repeat 100.0 4.4E-34 1.5E-38 252.0 24.9 267 1-308 52-343 (402)
68 4e54_B DNA damage-binding prot 100.0 3.6E-34 1.2E-38 255.1 23.4 223 23-316 113-337 (435)
69 3gre_A Serine/threonine-protei 100.0 1.1E-34 3.9E-39 258.5 20.1 276 1-304 81-437 (437)
70 2xyi_A Probable histone-bindin 100.0 9.8E-33 3.3E-37 245.5 31.9 260 22-311 121-414 (430)
71 3dm0_A Maltose-binding peripla 100.0 3.4E-33 1.1E-37 263.1 30.4 256 20-317 373-643 (694)
72 3dw8_B Serine/threonine-protei 100.0 4.3E-33 1.5E-37 248.8 29.5 268 1-305 45-444 (447)
73 3ei3_B DNA damage-binding prot 100.0 3.6E-33 1.2E-37 244.6 28.4 260 19-316 63-349 (383)
74 3dwl_C Actin-related protein 2 100.0 6.2E-34 2.1E-38 248.8 22.1 245 25-306 7-280 (377)
75 2oaj_A Protein SNI1; WD40 repe 100.0 2.7E-33 9.4E-38 269.2 28.2 170 141-318 450-676 (902)
76 3dw8_B Serine/threonine-protei 100.0 7.5E-33 2.6E-37 247.3 28.3 254 27-316 26-382 (447)
77 1p22_A F-BOX/WD-repeat protein 100.0 7.1E-33 2.4E-37 246.8 27.7 256 1-307 148-414 (435)
78 1k8k_C P40, ARP2/3 complex 41 100.0 1.9E-32 6.4E-37 238.7 29.7 246 25-307 4-274 (372)
79 1pgu_A Actin interacting prote 100.0 1.7E-32 5.7E-37 254.6 31.0 265 1-306 178-613 (615)
80 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.9E-32 1E-36 243.6 31.4 257 1-314 134-399 (445)
81 3sfz_A APAF-1, apoptotic pepti 100.0 1.5E-32 5.1E-37 274.4 31.1 274 1-307 632-1034(1249)
82 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-32 4.1E-37 263.9 28.9 252 20-316 4-269 (814)
83 1yfq_A Cell cycle arrest prote 100.0 5.9E-32 2E-36 232.9 30.3 260 1-304 28-321 (342)
84 1sq9_A Antiviral protein SKI8; 100.0 3.1E-32 1.1E-36 239.6 28.8 259 20-314 7-330 (397)
85 3k26_A Polycomb protein EED; W 100.0 1.6E-32 5.4E-37 238.5 26.0 265 24-311 13-323 (366)
86 1pgu_A Actin interacting prote 100.0 8.4E-32 2.9E-36 249.9 32.3 266 5-317 38-339 (615)
87 3jro_A Fusion protein of prote 100.0 6.5E-33 2.2E-37 262.8 24.5 239 1-306 26-284 (753)
88 2j04_B YDR362CP, TAU91; beta p 100.0 2.1E-33 7.1E-38 253.8 20.0 225 52-312 176-433 (524)
89 3odt_A Protein DOA1; ubiquitin 100.0 9.6E-32 3.3E-36 228.5 29.1 245 19-317 8-266 (313)
90 3mkq_A Coatomer beta'-subunit; 100.0 2.6E-32 8.9E-37 261.5 28.4 259 1-306 30-301 (814)
91 1yfq_A Cell cycle arrest prote 100.0 3.1E-32 1.1E-36 234.6 25.6 261 23-316 5-292 (342)
92 3i2n_A WD repeat-containing pr 100.0 2.2E-32 7.4E-37 236.9 24.6 257 20-306 9-290 (357)
93 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2E-31 6.7E-36 238.2 31.4 252 1-307 174-442 (445)
94 3zwl_B Eukaryotic translation 100.0 2.1E-31 7.1E-36 231.5 30.7 263 17-317 20-315 (369)
95 2w18_A PALB2, fancn, partner a 100.0 7.4E-32 2.5E-36 224.9 26.1 253 5-305 62-355 (356)
96 3sfz_A APAF-1, apoptotic pepti 100.0 1.5E-32 5.1E-37 274.4 24.4 264 1-313 857-1165(1249)
97 3lrv_A PRE-mRNA-splicing facto 100.0 3.2E-32 1.1E-36 235.0 23.1 232 1-306 53-291 (343)
98 3v7d_B Cell division control p 100.0 5.8E-31 2E-35 236.4 31.4 252 1-304 178-460 (464)
99 3mmy_A MRNA export factor; mRN 100.0 4.8E-32 1.6E-36 235.5 22.5 250 20-305 30-344 (368)
100 4gq1_A NUP37; propeller, trans 100.0 1.1E-32 3.6E-37 242.3 18.4 238 1-305 106-387 (393)
101 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.6E-31 1.9E-35 235.6 29.6 238 27-306 100-390 (450)
102 3jrp_A Fusion protein of prote 100.0 5.5E-31 1.9E-35 229.8 27.6 239 1-255 28-289 (379)
103 3f3f_A Nucleoporin SEH1; struc 100.0 1.1E-30 3.7E-35 225.0 27.3 233 1-255 28-339 (351)
104 4a11_B DNA excision repair pro 100.0 1.2E-30 3.9E-35 230.0 24.8 268 1-306 61-404 (408)
105 4gga_A P55CDC, cell division c 100.0 9.7E-30 3.3E-34 225.5 28.6 218 1-255 164-397 (420)
106 4aez_A CDC20, WD repeat-contai 100.0 6.2E-30 2.1E-34 225.4 26.2 235 25-307 87-336 (401)
107 2oaj_A Protein SNI1; WD40 repe 100.0 2.7E-30 9.4E-35 248.4 25.4 248 26-315 432-792 (902)
108 3jro_A Fusion protein of prote 100.0 3.1E-30 1E-34 244.5 24.7 216 23-307 3-238 (753)
109 1l0q_A Surface layer protein; 100.0 1.1E-28 3.7E-33 216.6 31.9 262 1-316 7-285 (391)
110 4h5i_A Guanine nucleotide-exch 100.0 8.6E-30 2.9E-34 221.4 23.4 188 2-255 153-345 (365)
111 1p22_A F-BOX/WD-repeat protein 100.0 1.7E-29 6E-34 224.9 25.8 229 24-306 128-364 (435)
112 2j04_A TAU60, YPL007P, hypothe 100.0 7.1E-30 2.4E-34 226.3 22.3 244 1-306 32-296 (588)
113 3vu4_A KMHSV2; beta-propeller 100.0 4.8E-29 1.6E-33 216.0 26.5 273 10-306 3-335 (355)
114 2j04_A TAU60, YPL007P, hypothe 100.0 2.9E-29 9.8E-34 222.5 23.4 237 26-314 12-261 (588)
115 2aq5_A Coronin-1A; WD40 repeat 100.0 7.5E-29 2.6E-33 218.5 26.0 246 31-316 36-310 (402)
116 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.7E-28 9.1E-33 218.2 26.2 237 30-305 5-337 (450)
117 2xyi_A Probable histone-bindin 100.0 3.3E-28 1.1E-32 216.3 25.2 229 1-255 146-412 (430)
118 3lrv_A PRE-mRNA-splicing facto 100.0 8.8E-28 3E-32 207.2 27.1 224 1-306 90-332 (343)
119 4ggc_A P55CDC, cell division c 100.0 1.8E-27 6.3E-32 202.6 28.0 219 1-254 84-316 (318)
120 3bws_A Protein LP49; two-domai 100.0 1.7E-27 5.9E-32 211.7 28.6 256 2-307 140-432 (433)
121 3mmy_A MRNA export factor; mRN 100.0 9.8E-28 3.3E-32 208.3 21.9 230 1-254 59-347 (368)
122 4gq1_A NUP37; propeller, trans 100.0 5.5E-28 1.9E-32 212.2 19.6 267 3-317 37-359 (393)
123 2w18_A PALB2, fancn, partner a 100.0 1.7E-27 5.8E-32 198.8 21.1 197 4-251 155-355 (356)
124 3bws_A Protein LP49; two-domai 99.9 2.3E-25 8E-30 198.0 27.5 264 3-315 96-399 (433)
125 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.4E-25 8.3E-30 196.6 25.9 266 7-317 94-397 (415)
126 3vu4_A KMHSV2; beta-propeller 99.9 1.4E-24 4.8E-29 187.9 27.5 217 1-255 76-338 (355)
127 2ojh_A Uncharacterized protein 99.9 2.3E-24 7.9E-29 181.1 25.0 251 2-298 18-293 (297)
128 1l0q_A Surface layer protein; 99.9 1.3E-23 4.5E-28 184.1 30.8 213 2-255 50-277 (391)
129 1ri6_A Putative isomerase YBHE 99.9 3.5E-23 1.2E-27 177.9 30.1 271 3-306 12-307 (343)
130 1nir_A Nitrite reductase; hemo 99.9 1.1E-22 3.6E-27 185.2 26.3 267 2-310 155-462 (543)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.9E-22 6.4E-27 178.2 27.1 227 6-284 159-407 (415)
132 3u4y_A Uncharacterized protein 99.9 1E-21 3.4E-26 168.2 28.7 272 2-313 16-310 (331)
133 1nir_A Nitrite reductase; hemo 99.9 3.8E-22 1.3E-26 181.6 26.7 278 2-315 196-523 (543)
134 3hfq_A Uncharacterized protein 99.9 6.2E-21 2.1E-25 164.5 30.4 268 2-306 12-316 (347)
135 3scy_A Hypothetical bacterial 99.9 4.9E-20 1.7E-24 159.7 32.7 268 2-306 23-336 (361)
136 2oit_A Nucleoporin 214KDA; NH2 99.9 5.3E-22 1.8E-26 175.9 19.9 221 29-307 36-278 (434)
137 1pby_B Quinohemoprotein amine 99.9 4.2E-21 1.4E-25 164.5 22.7 261 2-314 7-318 (337)
138 2z3z_A Dipeptidyl aminopeptida 99.9 7.3E-20 2.5E-24 172.7 26.0 260 4-308 99-436 (706)
139 1xfd_A DIP, dipeptidyl aminope 99.9 6E-20 2E-24 173.7 23.5 264 3-306 34-392 (723)
140 3o4h_A Acylamino-acid-releasin 99.9 3E-20 1E-24 171.4 20.7 232 29-311 21-279 (582)
141 2ecf_A Dipeptidyl peptidase IV 99.9 3.3E-20 1.1E-24 176.0 21.2 260 7-314 65-422 (741)
142 2oit_A Nucleoporin 214KDA; NH2 99.9 7.2E-20 2.5E-24 162.2 21.8 179 27-255 90-280 (434)
143 2ecf_A Dipeptidyl peptidase IV 99.9 6.8E-20 2.3E-24 173.8 22.3 240 29-314 36-375 (741)
144 3vgz_A Uncharacterized protein 99.8 7.5E-19 2.6E-23 151.5 26.4 246 5-297 68-334 (353)
145 1ri6_A Putative isomerase YBHE 99.8 9.7E-19 3.3E-23 150.1 26.6 243 5-284 59-332 (343)
146 3vgz_A Uncharacterized protein 99.8 1.6E-18 5.6E-23 149.4 26.3 239 28-314 39-311 (353)
147 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.8E-18 9.6E-23 148.9 27.9 270 6-309 14-343 (365)
148 3hfq_A Uncharacterized protein 99.8 5.6E-18 1.9E-22 145.9 28.7 230 4-255 61-321 (347)
149 1jmx_B Amine dehydrogenase; ox 99.8 4.3E-19 1.5E-23 152.7 20.6 233 2-314 17-333 (349)
150 2ojh_A Uncharacterized protein 99.8 6.5E-19 2.2E-23 147.7 20.5 219 54-309 17-260 (297)
151 2z3z_A Dipeptidyl aminopeptida 99.8 4.1E-19 1.4E-23 167.5 20.6 260 3-313 42-397 (706)
152 1k32_A Tricorn protease; prote 99.8 1E-18 3.5E-23 171.6 22.5 256 6-315 183-469 (1045)
153 1k32_A Tricorn protease; prote 99.8 6E-19 2.1E-23 173.2 20.7 252 2-306 220-501 (1045)
154 3u4y_A Uncharacterized protein 99.8 4.2E-18 1.5E-22 145.6 22.3 227 48-307 9-252 (331)
155 1xfd_A DIP, dipeptidyl aminope 99.8 6.6E-19 2.3E-23 166.6 17.5 239 31-309 18-347 (723)
156 3o4h_A Acylamino-acid-releasin 99.8 4.7E-18 1.6E-22 156.8 22.5 242 4-307 42-315 (582)
157 3scy_A Hypothetical bacterial 99.8 3E-16 1E-20 135.8 32.2 242 5-283 74-360 (361)
158 1z68_A Fibroblast activation p 99.8 3.7E-18 1.3E-22 161.3 18.3 258 3-306 33-390 (719)
159 1z68_A Fibroblast activation p 99.8 9.2E-18 3.2E-22 158.6 17.8 237 34-310 20-349 (719)
160 3fvz_A Peptidyl-glycine alpha- 99.8 3.8E-16 1.3E-20 133.4 24.8 244 29-308 23-323 (329)
161 1pby_B Quinohemoprotein amine 99.8 1.7E-16 5.8E-21 135.7 21.8 213 3-255 53-312 (337)
162 2oiz_A Aromatic amine dehydrog 99.7 1E-15 3.5E-20 132.3 23.9 269 4-313 29-343 (361)
163 1q7f_A NHL, brain tumor CG1071 99.7 6.6E-15 2.3E-19 123.1 28.1 235 27-306 27-279 (286)
164 4a5s_A Dipeptidyl peptidase 4 99.7 6.9E-16 2.4E-20 146.1 22.7 241 30-310 17-356 (740)
165 1jmx_B Amine dehydrogenase; ox 99.7 2.2E-15 7.5E-20 129.5 19.9 156 47-255 9-177 (349)
166 3dsm_A Uncharacterized protein 99.7 1.1E-14 3.7E-19 124.3 22.9 262 2-314 13-309 (328)
167 3pe7_A Oligogalacturonate lyas 99.7 2.2E-15 7.5E-20 131.6 18.4 252 7-306 61-381 (388)
168 1jof_A Carboxy-CIS,CIS-muconat 99.7 8.3E-15 2.8E-19 127.0 21.7 223 7-254 61-342 (365)
169 3azo_A Aminopeptidase; POP fam 99.7 2.5E-14 8.6E-19 133.8 25.6 264 3-313 44-375 (662)
170 3pe7_A Oligogalacturonate lyas 99.7 7.7E-15 2.6E-19 128.1 20.7 258 12-317 16-339 (388)
171 3azo_A Aminopeptidase; POP fam 99.7 1.2E-14 4.1E-19 136.1 22.2 250 23-314 17-332 (662)
172 4a5s_A Dipeptidyl peptidase 4 99.7 1.2E-14 4.2E-19 137.6 21.4 225 5-255 35-355 (740)
173 3no2_A Uncharacterized protein 99.6 1.3E-13 4.5E-18 114.4 24.4 239 1-317 10-263 (276)
174 1q7f_A NHL, brain tumor CG1071 99.6 1.2E-13 4.2E-18 115.3 23.8 215 3-254 48-281 (286)
175 2oiz_A Aromatic amine dehydrog 99.6 7.9E-14 2.7E-18 120.5 22.2 242 4-289 79-360 (361)
176 3c5m_A Oligogalacturonate lyas 99.6 2.1E-14 7E-19 125.6 17.7 250 5-305 59-380 (396)
177 1rwi_B Serine/threonine-protei 99.6 3.3E-13 1.1E-17 111.6 23.2 222 3-307 43-264 (270)
178 3e5z_A Putative gluconolactona 99.6 1.2E-13 4E-18 116.1 20.7 221 2-306 46-285 (296)
179 2dg1_A DRP35, lactonase; beta 99.6 6.9E-13 2.3E-17 113.3 25.5 233 3-314 24-270 (333)
180 2gop_A Trilobed protease; beta 99.6 3.5E-13 1.2E-17 115.7 23.3 233 4-306 41-330 (347)
181 2xdw_A Prolyl endopeptidase; a 99.6 1.4E-12 4.7E-17 123.0 28.4 236 28-307 123-414 (710)
182 3fvz_A Peptidyl-glycine alpha- 99.6 4E-13 1.4E-17 114.6 21.5 215 5-253 68-322 (329)
183 3c5m_A Oligogalacturonate lyas 99.6 2.5E-13 8.5E-18 118.7 18.6 254 11-316 15-338 (396)
184 3e5z_A Putative gluconolactona 99.5 1.5E-12 5.1E-17 109.3 22.2 217 23-317 21-256 (296)
185 2bkl_A Prolyl endopeptidase; m 99.5 1.8E-12 6.1E-17 122.0 24.5 242 27-315 118-405 (695)
186 2z2n_A Virginiamycin B lyase; 99.5 2.9E-11 1E-15 101.2 29.2 239 24-307 9-255 (299)
187 2z2n_A Virginiamycin B lyase; 99.5 6.8E-11 2.3E-15 99.0 30.6 251 5-306 35-294 (299)
188 2dg1_A DRP35, lactonase; beta 99.5 2.1E-11 7.2E-16 104.0 26.7 221 2-297 62-300 (333)
189 3no2_A Uncharacterized protein 99.5 2E-12 6.8E-17 107.2 19.2 198 48-315 4-204 (276)
190 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 3E-11 1E-15 102.0 26.8 237 28-306 16-298 (314)
191 1qks_A Cytochrome CD1 nitrite 99.5 5E-11 1.7E-15 108.4 27.9 267 3-306 174-476 (567)
192 3dsm_A Uncharacterized protein 99.5 7.2E-11 2.5E-15 100.6 25.3 215 4-255 62-303 (328)
193 2mad_H Methylamine dehydrogena 99.4 2.7E-10 9.1E-15 98.6 28.9 262 7-312 48-356 (373)
194 2qc5_A Streptogramin B lactona 99.4 5.7E-10 2E-14 93.3 29.9 252 4-305 39-298 (300)
195 3hrp_A Uncharacterized protein 99.4 1.9E-10 6.4E-15 100.9 27.6 236 30-305 131-408 (409)
196 2qc5_A Streptogramin B lactona 99.4 3.4E-10 1.2E-14 94.7 28.0 239 25-308 15-261 (300)
197 1rwi_B Serine/threonine-protei 99.4 3.2E-11 1.1E-15 99.6 20.6 200 31-310 25-225 (270)
198 3g4e_A Regucalcin; six bladed 99.4 2.2E-10 7.4E-15 96.1 25.8 215 4-296 33-262 (297)
199 1xip_A Nucleoporin NUP159; bet 99.4 8.8E-12 3E-16 107.2 16.7 186 31-293 39-230 (388)
200 2gop_A Trilobed protease; beta 99.4 4.8E-11 1.6E-15 102.3 20.5 194 58-306 42-290 (347)
201 3sjl_D Methylamine dehydrogena 99.4 1.2E-10 4E-15 99.8 22.3 269 5-315 58-372 (386)
202 1qks_A Cytochrome CD1 nitrite 99.4 9.3E-10 3.2E-14 100.1 29.0 282 2-315 214-547 (567)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 4.7E-10 1.6E-14 94.6 25.5 224 3-254 43-300 (314)
204 1yr2_A Prolyl oligopeptidase; 99.4 1.7E-10 5.7E-15 109.3 24.5 241 28-313 161-447 (741)
205 2xdw_A Prolyl endopeptidase; a 99.3 4.5E-10 1.5E-14 105.9 24.5 217 5-255 150-416 (710)
206 3c75_H MADH, methylamine dehyd 99.3 2.9E-10 9.9E-15 99.1 21.3 266 6-313 99-409 (426)
207 2bkl_A Prolyl endopeptidase; m 99.3 3.4E-10 1.2E-14 106.4 23.4 235 47-313 77-357 (695)
208 2ghs_A AGR_C_1268P; regucalcin 99.3 3.5E-09 1.2E-13 90.0 27.1 214 4-297 69-293 (326)
209 1xip_A Nucleoporin NUP159; bet 99.3 4E-11 1.4E-15 103.1 13.0 148 116-309 39-193 (388)
210 3g4e_A Regucalcin; six bladed 99.3 9.3E-09 3.2E-13 86.1 26.5 214 28-315 11-238 (297)
211 1mda_H Methylamine dehydrogena 99.2 2.2E-09 7.4E-14 92.1 20.0 259 7-314 47-354 (368)
212 3dr2_A Exported gluconolactona 99.2 9.6E-09 3.3E-13 86.4 22.2 229 24-302 39-302 (305)
213 3iuj_A Prolyl endopeptidase; h 99.2 4.6E-09 1.6E-13 98.7 21.5 241 27-314 126-412 (693)
214 2mad_H Methylamine dehydrogena 99.1 8.4E-08 2.9E-12 82.9 27.3 221 4-255 95-352 (373)
215 2qe8_A Uncharacterized protein 99.1 5.8E-09 2E-13 89.3 19.8 228 17-308 7-280 (343)
216 1yr2_A Prolyl oligopeptidase; 99.1 1.1E-08 3.8E-13 96.9 23.5 236 47-313 116-401 (741)
217 2ghs_A AGR_C_1268P; regucalcin 99.1 2.2E-08 7.7E-13 85.0 23.0 206 32-314 51-267 (326)
218 2ece_A 462AA long hypothetical 99.1 2.9E-08 9.8E-13 85.9 22.2 227 2-295 102-399 (462)
219 3sjl_D Methylamine dehydrogena 99.1 1.1E-08 3.7E-13 87.8 19.0 223 4-255 107-365 (386)
220 2qe8_A Uncharacterized protein 99.1 2.9E-09 1E-13 91.2 15.1 216 27-303 64-317 (343)
221 2hz6_A Endoplasmic reticulum t 99.1 2.2E-11 7.5E-16 105.4 1.8 188 47-313 7-199 (369)
222 3hrp_A Uncharacterized protein 99.1 3.9E-08 1.3E-12 86.1 22.2 214 4-251 150-408 (409)
223 2hz6_A Endoplasmic reticulum t 99.1 8E-11 2.7E-15 101.9 4.4 177 2-255 15-194 (369)
224 1yiq_A Quinohemoprotein alcoho 99.0 1.2E-07 4.2E-12 88.6 23.9 154 149-317 276-516 (689)
225 1kb0_A Quinohemoprotein alcoho 99.0 2E-07 6.8E-12 87.0 23.6 148 149-316 284-517 (677)
226 1kb0_A Quinohemoprotein alcoho 99.0 3E-07 1E-11 85.8 24.6 107 141-255 330-509 (677)
227 3c75_H MADH, methylamine dehyd 99.0 1.1E-07 3.8E-12 82.9 20.0 223 4-255 147-404 (426)
228 3q7m_A Lipoprotein YFGL, BAMB; 98.9 3E-07 1E-11 79.6 22.2 245 2-304 109-375 (376)
229 3dr2_A Exported gluconolactona 98.9 3.5E-07 1.2E-11 76.8 21.8 204 3-245 64-299 (305)
230 2iwa_A Glutamine cyclotransfer 98.9 9.9E-07 3.4E-11 71.6 22.3 210 20-306 10-236 (266)
231 3q7m_A Lipoprotein YFGL, BAMB; 98.8 8.4E-06 2.9E-10 70.4 27.8 267 2-314 59-345 (376)
232 1mda_H Methylamine dehydrogena 98.8 2E-07 7E-12 79.9 17.0 216 3-255 93-348 (368)
233 1yiq_A Quinohemoprotein alcoho 98.8 1.2E-06 4.1E-11 82.0 23.1 107 141-255 322-507 (689)
234 2fp8_A Strictosidine synthase; 98.8 9.6E-06 3.3E-10 68.5 26.4 140 147-309 164-315 (322)
235 3iuj_A Prolyl endopeptidase; h 98.8 4.9E-07 1.7E-11 84.9 19.6 216 2-255 151-407 (693)
236 1k3i_A Galactose oxidase precu 98.7 1.7E-06 5.7E-11 80.7 21.5 256 7-296 220-530 (656)
237 1npe_A Nidogen, entactin; glyc 98.7 2.1E-05 7.2E-10 64.4 25.3 229 5-314 9-246 (267)
238 3nol_A Glutamine cyclotransfer 98.7 7.4E-06 2.5E-10 65.8 21.4 196 20-294 32-243 (262)
239 1kv9_A Type II quinohemoprotei 98.7 5.4E-06 1.9E-10 77.3 23.0 153 149-316 271-498 (668)
240 3mbr_X Glutamine cyclotransfer 98.7 3.6E-05 1.2E-09 61.2 23.5 198 19-295 9-223 (243)
241 3hxj_A Pyrrolo-quinoline quino 98.7 7.1E-07 2.4E-11 75.5 14.9 248 2-313 36-290 (330)
242 2ece_A 462AA long hypothetical 98.6 3.7E-06 1.3E-10 72.9 18.9 163 117-306 140-351 (462)
243 3nok_A Glutaminyl cyclase; bet 98.6 1.4E-05 4.8E-10 64.2 21.0 195 21-295 45-254 (268)
244 3hxj_A Pyrrolo-quinoline quino 98.6 1.6E-06 5.5E-11 73.3 15.6 209 49-306 108-323 (330)
245 1fwx_A Nitrous oxide reductase 98.6 3.4E-06 1.2E-10 75.7 17.1 248 47-315 99-439 (595)
246 2fp8_A Strictosidine synthase; 98.5 4.8E-05 1.6E-09 64.1 22.0 229 30-315 19-277 (322)
247 4a2l_A BT_4663, two-component 98.5 0.00037 1.3E-08 66.5 29.7 262 4-307 191-480 (795)
248 4a2l_A BT_4663, two-component 98.4 0.00036 1.2E-08 66.6 28.9 261 6-307 150-436 (795)
249 2iwa_A Glutamine cyclotransfer 98.4 3.5E-05 1.2E-09 62.5 18.7 182 5-254 43-238 (266)
250 3v64_C Agrin; beta propeller, 98.4 0.00059 2E-08 58.2 27.7 162 117-314 118-283 (349)
251 1npe_A Nidogen, entactin; glyc 98.4 0.00013 4.5E-09 59.6 22.2 160 116-310 37-201 (267)
252 3v65_B Low-density lipoprotein 98.4 0.00032 1.1E-08 60.8 25.5 162 117-314 161-326 (386)
253 2ad6_A Methanol dehydrogenase 98.4 0.00017 5.7E-09 65.9 23.9 152 149-316 273-504 (571)
254 3nol_A Glutamine cyclotransfer 98.3 5.5E-05 1.9E-09 60.7 16.9 170 105-315 32-210 (262)
255 3v9f_A Two-component system se 98.3 0.0011 3.8E-08 63.1 28.9 244 29-313 312-574 (781)
256 3mbr_X Glutamine cyclotransfer 98.3 0.0002 6.9E-09 56.9 19.4 173 6-242 43-223 (243)
257 3qqz_A Putative uncharacterize 98.3 0.00029 9.8E-09 56.8 20.6 184 108-314 20-211 (255)
258 3nok_A Glutaminyl cyclase; bet 98.3 2.8E-05 9.6E-10 62.5 13.9 174 2-242 71-254 (268)
259 3p5b_L Low density lipoprotein 98.3 0.0018 6E-08 56.3 27.9 232 6-314 92-328 (400)
260 1ijq_A LDL receptor, low-densi 98.3 0.0014 4.8E-08 55.0 28.2 232 5-314 9-246 (316)
261 3sov_A LRP-6, low-density lipo 98.2 0.0012 4.2E-08 55.3 24.5 229 5-314 12-246 (318)
262 1k3i_A Galactose oxidase precu 98.2 8E-05 2.7E-09 69.4 18.8 230 48-307 197-497 (656)
263 2ad6_A Methanol dehydrogenase 98.2 0.00049 1.7E-08 62.8 23.4 107 141-255 319-496 (571)
264 1kv9_A Type II quinohemoprotei 98.2 0.00035 1.2E-08 65.2 22.8 54 196-255 437-490 (668)
265 2p4o_A Hypothetical protein; p 98.2 0.0016 5.5E-08 54.3 25.1 213 20-309 23-244 (306)
266 3tc9_A Hypothetical hydrolase; 98.2 0.0021 7.1E-08 56.5 26.4 238 31-306 138-429 (430)
267 3v64_C Agrin; beta propeller, 98.2 0.0011 3.8E-08 56.5 23.9 164 115-312 73-239 (349)
268 1fwx_A Nitrous oxide reductase 98.2 0.00019 6.4E-09 64.6 19.1 147 146-307 173-361 (595)
269 2p9w_A MAL S 1 allergenic prot 98.2 0.0012 4.2E-08 54.8 22.1 149 147-307 99-265 (334)
270 4hw6_A Hypothetical protein, I 98.2 0.0014 4.7E-08 57.6 23.9 240 31-306 140-432 (433)
271 3v9f_A Two-component system se 98.2 0.0024 8.3E-08 60.7 27.3 265 2-308 329-612 (781)
272 2xbg_A YCF48-like protein; pho 98.1 0.0026 8.8E-08 53.6 29.5 232 29-305 79-320 (327)
273 3qqz_A Putative uncharacterize 98.1 0.0021 7.1E-08 51.8 25.6 218 24-305 21-251 (255)
274 1w6s_A Methanol dehydrogenase 98.1 0.0036 1.2E-07 57.3 26.1 60 243-315 452-512 (599)
275 2p4o_A Hypothetical protein; p 98.1 0.0029 1E-07 52.7 25.6 137 141-294 131-275 (306)
276 1flg_A Protein (quinoprotein e 98.1 0.0031 1E-07 57.7 24.8 62 243-317 465-527 (582)
277 1w6s_A Methanol dehydrogenase 98.1 0.0016 5.4E-08 59.7 22.7 54 196-255 452-505 (599)
278 2xe4_A Oligopeptidase B; hydro 98.0 0.00066 2.3E-08 64.2 20.8 153 119-303 225-394 (751)
279 2vpj_A Kelch-like protein 12; 98.0 0.0029 1E-07 52.5 22.7 145 141-309 116-280 (301)
280 3v65_B Low-density lipoprotein 98.0 0.0022 7.7E-08 55.4 22.4 163 115-311 116-281 (386)
281 2p9w_A MAL S 1 allergenic prot 98.0 0.00056 1.9E-08 56.9 17.2 166 117-306 15-214 (334)
282 3m0c_C LDL receptor, low-densi 98.0 0.0095 3.3E-07 56.3 27.5 166 115-314 471-640 (791)
283 3ii7_A Kelch-like protein 7; p 98.0 0.0027 9.2E-08 52.8 20.9 148 141-312 105-277 (306)
284 1flg_A Protein (quinoprotein e 97.9 0.006 2.1E-07 55.8 24.0 54 196-255 465-518 (582)
285 1ijq_A LDL receptor, low-densi 97.9 0.0078 2.7E-07 50.4 22.5 168 115-313 30-201 (316)
286 3p5b_L Low density lipoprotein 97.9 0.0062 2.1E-07 52.9 22.4 169 114-313 111-283 (400)
287 2xbg_A YCF48-like protein; pho 97.9 0.0086 3E-07 50.4 25.0 224 29-300 35-272 (327)
288 2xn4_A Kelch-like protein 2; s 97.9 0.0045 1.5E-07 51.4 20.8 147 141-311 112-280 (302)
289 1n7d_A LDL receptor, low-densi 97.9 0.00021 7.2E-09 66.9 13.7 164 117-314 455-622 (699)
290 3kya_A Putative phosphatase; s 97.7 0.023 7.9E-07 50.4 25.9 243 32-308 141-476 (496)
291 3sov_A LRP-6, low-density lipo 97.7 0.008 2.7E-07 50.4 19.8 165 116-313 36-203 (318)
292 1zgk_A Kelch-like ECH-associat 97.7 0.016 5.5E-07 48.2 21.8 147 141-311 125-291 (308)
293 4asc_A Kelch repeat and BTB do 97.7 0.016 5.6E-07 48.3 21.3 138 148-309 117-279 (315)
294 3tc9_A Hypothetical hydrolase; 97.7 0.017 5.9E-07 50.6 21.9 218 6-251 159-428 (430)
295 2xe4_A Oligopeptidase B; hydro 97.6 0.0018 6.2E-08 61.2 15.5 116 116-254 175-305 (751)
296 3m0c_C LDL receptor, low-densi 97.6 0.027 9.4E-07 53.3 23.1 169 114-313 423-595 (791)
297 4hw6_A Hypothetical protein, I 97.4 0.038 1.3E-06 48.5 21.1 218 6-252 162-432 (433)
298 3sre_A PON1, serum paraoxonase 97.4 0.045 1.5E-06 46.4 20.4 145 141-305 130-296 (355)
299 3ii7_A Kelch-like protein 7; p 97.4 0.037 1.2E-06 45.9 19.4 96 148-255 169-274 (306)
300 3amr_A 3-phytase; beta-propell 97.4 0.051 1.7E-06 45.6 22.0 161 147-314 98-272 (355)
301 2woz_A Kelch repeat and BTB do 97.3 0.051 1.7E-06 45.3 21.8 144 141-308 113-288 (318)
302 3s94_A LRP-6, low-density lipo 97.3 0.11 3.7E-06 47.9 24.1 228 5-312 17-249 (619)
303 4a0p_A LRP6, LRP-6, low-densit 97.3 0.11 3.8E-06 47.9 27.6 226 5-313 14-244 (628)
304 2uvk_A YJHT; unknown function, 97.2 0.044 1.5E-06 46.5 19.0 139 148-307 168-342 (357)
305 2xn4_A Kelch-like protein 2; s 97.1 0.092 3.1E-06 43.3 19.0 96 148-255 173-278 (302)
306 2vpj_A Kelch-like protein 12; 97.1 0.052 1.8E-06 44.8 17.2 103 141-255 163-280 (301)
307 3ei3_A DNA damage-binding prot 97.1 0.29 9.8E-06 48.6 30.3 64 5-72 531-595 (1158)
308 3pbp_A Nucleoporin NUP82; beta 97.0 0.075 2.6E-06 45.8 17.6 144 48-202 31-208 (452)
309 3kya_A Putative phosphatase; s 97.0 0.048 1.6E-06 48.4 16.9 170 116-307 140-341 (496)
310 3amr_A 3-phytase; beta-propell 96.9 0.16 5.4E-06 42.7 22.0 106 141-252 146-262 (355)
311 4a0p_A LRP6, LRP-6, low-densit 96.8 0.3 1E-05 45.0 23.7 164 115-313 37-203 (628)
312 1zgk_A Kelch-like ECH-associat 96.8 0.18 6.2E-06 41.7 18.7 103 141-255 172-289 (308)
313 3pbp_A Nucleoporin NUP82; beta 96.7 0.11 3.9E-06 44.7 15.9 152 141-302 35-207 (452)
314 1n7d_A LDL receptor, low-densi 96.6 0.0049 1.7E-07 57.7 7.8 167 116-313 407-577 (699)
315 4asc_A Kelch repeat and BTB do 96.5 0.22 7.4E-06 41.4 17.1 103 141-255 152-279 (315)
316 3sre_A PON1, serum paraoxonase 96.5 0.23 7.8E-06 42.1 16.7 144 146-306 81-251 (355)
317 2zwa_A Leucine carboxyl methyl 96.5 0.26 8.9E-06 46.1 18.7 113 141-255 504-637 (695)
318 2xzh_A Clathrin heavy chain 1; 96.4 0.32 1.1E-05 40.3 24.5 204 47-311 76-295 (365)
319 2xzh_A Clathrin heavy chain 1; 96.2 0.41 1.4E-05 39.7 27.3 223 5-255 86-334 (365)
320 1tl2_A L10, protein (tachylect 96.1 0.13 4.4E-06 40.1 11.9 144 141-306 7-162 (236)
321 3ei3_A DNA damage-binding prot 96.1 1.2 4.3E-05 44.1 26.6 142 141-306 847-998 (1158)
322 1bpo_A Protein (clathrin); cla 95.8 0.84 2.9E-05 39.6 27.4 223 5-255 85-333 (494)
323 2ism_A Putative oxidoreductase 95.8 0.16 5.5E-06 43.1 12.5 110 177-295 32-153 (352)
324 1tl2_A L10, protein (tachylect 95.5 0.64 2.2E-05 36.2 14.7 143 82-246 42-203 (236)
325 3s94_A LRP-6, low-density lipo 95.4 1.6 5.6E-05 40.1 24.8 155 116-306 393-550 (619)
326 1cru_A Protein (soluble quinop 95.4 1.3 4.4E-05 38.9 18.5 114 115-242 27-163 (454)
327 1bpo_A Protein (clathrin); cla 95.4 1.2 4.2E-05 38.6 25.1 160 141-311 119-294 (494)
328 2woz_A Kelch repeat and BTB do 95.2 1.1 3.7E-05 37.1 17.9 102 141-254 162-288 (318)
329 3a9g_A Putative uncharacterize 95.1 0.38 1.3E-05 40.8 12.4 110 177-296 30-154 (354)
330 2g8s_A Glucose/sorbosone dehyd 95.1 0.5 1.7E-05 40.0 13.1 124 177-308 19-174 (353)
331 2uvk_A YJHT; unknown function, 94.6 1.1 3.7E-05 37.8 14.1 53 149-208 286-344 (357)
332 2zwa_A Leucine carboxyl methyl 94.5 1.8 6.3E-05 40.4 16.5 153 141-308 401-578 (695)
333 2be1_A Serine/threonine-protei 94.3 0.9 3.1E-05 38.1 12.5 115 49-209 10-133 (339)
334 1xi4_A Clathrin heavy chain; a 94.2 4.1 0.00014 41.1 18.2 220 5-252 85-330 (1630)
335 3das_A Putative oxidoreductase 93.4 3.1 0.00011 35.0 18.3 41 21-69 23-63 (347)
336 3das_A Putative oxidoreductase 93.3 3.2 0.00011 34.9 17.9 117 111-241 28-158 (347)
337 1xi4_A Clathrin heavy chain; a 93.2 3.5 0.00012 41.6 15.9 160 141-311 119-294 (1630)
338 2g8s_A Glucose/sorbosone dehyd 92.8 3.9 0.00013 34.4 24.1 69 223-300 271-347 (353)
339 2wg3_C Hedgehog-interacting pr 92.1 2.9 0.0001 36.8 13.0 119 177-298 15-160 (463)
340 1cru_A Protein (soluble quinop 91.9 6.2 0.00021 34.6 19.5 32 29-68 26-57 (454)
341 2ism_A Putative oxidoreductase 91.7 5.3 0.00018 33.6 23.0 28 276-306 269-296 (352)
342 3ott_A Two-component system se 91.5 9.2 0.00032 36.0 24.8 232 29-307 21-260 (758)
343 3a9g_A Putative uncharacterize 90.0 8 0.00027 32.6 25.4 65 223-295 259-330 (354)
344 3q6k_A 43.2 kDa salivary prote 89.3 9.4 0.00032 32.5 16.1 155 148-307 123-306 (381)
345 3sbq_A Nitrous-oxide reductase 86.9 5.1 0.00018 36.0 10.0 75 179-254 326-409 (638)
346 4gq2_M Nucleoporin NUP120; bet 82.2 31 0.0011 33.5 14.3 40 116-169 237-276 (950)
347 3ott_A Two-component system se 82.2 33 0.0011 32.1 27.8 264 7-307 212-502 (758)
348 2wg3_C Hedgehog-interacting pr 80.5 29 0.001 30.4 13.5 117 115-243 14-159 (463)
349 2be1_A Serine/threonine-protei 80.0 4.3 0.00015 34.0 6.6 115 188-315 11-139 (339)
350 3qhy_B Beta-lactamase inhibito 73.6 34 0.0012 27.6 19.0 127 147-306 119-245 (282)
351 3sbq_A Nitrous-oxide reductase 68.5 18 0.00061 32.6 7.7 79 225-307 325-408 (638)
352 3qhy_B Beta-lactamase inhibito 64.9 53 0.0018 26.4 17.7 127 147-306 80-206 (282)
353 3f7f_A Nucleoporin NUP120; nuc 62.8 8.9 0.0003 35.6 4.9 29 49-77 231-259 (729)
354 1sqj_A OXG-RCBH, oligoxylogluc 60.5 95 0.0033 29.4 11.7 114 175-298 14-143 (789)
355 3b7f_A Glycosyl hydrolase, BNR 56.4 90 0.0031 26.3 21.7 110 177-298 116-254 (394)
356 3zwu_A Alkaline phosphatase PH 55.3 29 0.00098 31.6 6.8 58 178-240 478-548 (592)
357 4fhn_B Nucleoporin NUP120; pro 55.1 8.9 0.0003 38.2 3.8 29 47-75 247-275 (1139)
358 1suu_A DNA gyrase subunit A; t 52.6 95 0.0032 25.4 28.9 196 47-254 6-232 (312)
359 4fhn_B Nucleoporin NUP120; pro 52.3 1.9E+02 0.0065 28.8 15.9 36 277-314 240-276 (1139)
360 4gq2_M Nucleoporin NUP120; bet 48.7 2E+02 0.0068 28.0 19.1 33 224-256 237-269 (950)
361 3q6k_A 43.2 kDa salivary prote 47.6 1.3E+02 0.0044 25.5 20.8 109 142-253 175-306 (381)
362 4a9v_A PHOX; hydrolase, beta-p 47.2 69 0.0023 29.0 7.8 60 177-241 477-549 (592)
363 3uc1_A DNA gyrase subunit A; D 40.5 1.5E+02 0.0053 24.4 25.4 161 141-306 112-278 (327)
364 3l6v_A GYRA, DNA gyrase subuni 39.8 1.7E+02 0.0058 24.7 25.7 109 141-254 116-266 (370)
365 3no0_A DNA gyrase subunit A; D 33.0 1.9E+02 0.0064 23.1 18.6 155 141-306 83-245 (276)
366 3s25_A Hypothetical 7-bladed b 31.1 2.1E+02 0.0072 23.1 19.7 108 181-314 150-262 (302)
367 3s25_A Hypothetical 7-bladed b 29.2 2.3E+02 0.0078 22.9 20.1 93 141-254 159-256 (302)
368 1wp5_A Topoisomerase IV; broke 27.6 2.6E+02 0.0087 23.0 27.4 108 141-253 109-225 (323)
369 3oky_B Putative uncharacterize 27.5 3.1E+02 0.011 24.7 8.8 78 225-304 405-497 (565)
370 3zwu_A Alkaline phosphatase PH 26.9 2.8E+02 0.0096 25.2 8.5 39 149-193 510-548 (592)
371 1zi0_A DNA gyrase subunit A; b 25.2 2.7E+02 0.0093 22.5 27.7 111 141-253 112-226 (307)
372 2cn3_A Xyloglucanase, beta-1,4 23.3 4.6E+02 0.016 24.4 13.6 64 176-245 433-499 (737)
373 3al9_A Plexin-A2; beta-propell 22.3 2.2E+02 0.0075 25.5 6.9 71 225-302 402-476 (539)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.5e-44 Score=308.95 Aligned_cols=260 Identities=19% Similarity=0.282 Sum_probs=231.4
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
||+.|++|+||++.. ++......+.+|...|.+++|+ +++.++++++.|++|++||+.+++...... ...
T Consensus 53 tgs~D~~v~vW~~~~-~~~~~~~~l~gh~~~v~~~~~~--------~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~-~~~ 122 (321)
T 3ow8_A 53 TGSLDDLVKVWKWRD-ERLDLQWSLEGHQLGVVSVDIS--------HTLPIAASSSLDAHIRLWDLENGKQIKSID-AGP 122 (321)
T ss_dssp EEETTSCEEEEEEET-TEEEEEEEECCCSSCEEEEEEC--------SSSSEEEEEETTSEEEEEETTTTEEEEEEE-CCT
T ss_pred EEcCCCCEEEEECCC-CCeeeeeeeccCCCCEEEEEEC--------CCCCEEEEEeCCCcEEEEECCCCCEEEEEe-CCC
Confidence 578999999999988 7666677899999999999999 889999999999999999999887665443 234
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI 152 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i 152 (351)
..+..++|+|+++.++++..++.+.++. .+..|...|.+++|+ +++++ |++|+.|+.|++
T Consensus 123 ~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~s------pdg~~------lasg~~dg~i~i 190 (321)
T 3ow8_A 123 VDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYS------PDGKY------LASGAIDGIINI 190 (321)
T ss_dssp TCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEEC------TTSSE------EEEEETTSCEEE
T ss_pred ccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEEC------CCCCE------EEEEcCCCeEEE
Confidence 5677899999999999999999887765 355678889999999 78999 999999999999
Q ss_pred EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511 153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR 232 (351)
Q Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 232 (351)
||+++ ++.+..+. .|...|.+++|+|++++|++++.|+.|++||+++. .+...+.+|...|.+++|+|
T Consensus 191 wd~~~--~~~~~~~~-----~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~~~~sp 258 (321)
T 3ow8_A 191 FDIAT--GKLLHTLE-----GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA-----NLAGTLSGHASWVLNVAFCP 258 (321)
T ss_dssp EETTT--TEEEEEEC-----CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC-----CEEEEECCCSSCEEEEEECT
T ss_pred EECCC--CcEEEEEc-----ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc-----ceeEEEcCCCCceEEEEECC
Confidence 99998 77666655 78889999999999999999999999999999886 45778889999999999999
Q ss_pred CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 233 SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 233 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
++++|++++.|++|++||+.++. .+..+..|...|++++|+| ++.+|++++.|+.|+|||.+
T Consensus 259 ~~~~l~s~s~D~~v~iwd~~~~~----------~~~~~~~h~~~v~~v~~s~--~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 259 DDTHFVSSSSDKSVKVWDVGTRT----------CVHTFFDHQDQVWGVKYNG--NGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTTE----------EEEEECCCSSCEEEEEECT--TSSEEEEEETTCCEEEEECC
T ss_pred CCCEEEEEeCCCcEEEEeCCCCE----------EEEEEcCCCCcEEEEEECC--CCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999998876 5666778999999999999 89999999999999999964
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.8e-43 Score=310.51 Aligned_cols=257 Identities=21% Similarity=0.316 Sum_probs=227.6
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.||+|+|||+.+ ++ ....+.+|.+.|++++|+ +++++|++|+.|++|++||+.+.+.+..+ ..+.
T Consensus 125 s~s~Dg~i~vwd~~~-~~--~~~~l~~h~~~V~~v~~~--------~~~~~l~sgs~D~~i~iwd~~~~~~~~~~-~~h~ 192 (410)
T 1vyh_C 125 SASEDATIKVWDYET-GD--FERTLKGHTDSVQDISFD--------HSGKLLASCSADMTIKLWDFQGFECIRTM-HGHD 192 (410)
T ss_dssp EEESSSCEEEEETTT-CC--CCEEECCCSSCEEEEEEC--------TTSSEEEEEETTSCCCEEETTSSCEEECC-CCCS
T ss_pred EEeCCCeEEEEECCC-Cc--EEEEEeccCCcEEEEEEc--------CCCCEEEEEeCCCeEEEEeCCCCceeEEE-cCCC
Confidence 478999999999998 63 456889999999999999 88999999999999999999887655443 3456
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI 152 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i 152 (351)
..+.++.|+|++..+++++.++.+++|. .+.+|...|.++.++ +++.+ |++|+.|++|++
T Consensus 193 ~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~------~~g~~------l~s~s~D~~v~v 260 (410)
T 1vyh_C 193 HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN------QDGTL------IASCSNDQTVRV 260 (410)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC------TTSSE------EEEEETTSCEEE
T ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEEC------CCCCE------EEEEcCCCeEEE
Confidence 6899999999999999999999988765 467899999999999 78899 999999999999
Q ss_pred EeccCCCcceEEEEEeccccccccceEEEEEcCC--------------------CCEEEEEeeCCeEEEEEcccCcccCc
Q 048511 153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD--------------------GRSILAHGYGGAFHLWRNVGVDIDNW 212 (351)
Q Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~--------------------~~~l~~~~~dg~i~~~d~~~~~~~~~ 212 (351)
||+++ +.....+. .|...|.+++|+|+ +.+|++++.|+.|++||++++
T Consensus 261 wd~~~--~~~~~~~~-----~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~----- 328 (410)
T 1vyh_C 261 WVVAT--KECKAELR-----EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG----- 328 (410)
T ss_dssp EETTT--CCEEEEEC-----CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-----
T ss_pred EECCC--CceeeEec-----CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC-----
Confidence 99998 66666554 78889999999996 678999999999999999987
Q ss_pred ccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEE
Q 048511 213 QPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFV 292 (351)
Q Consensus 213 ~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 292 (351)
.++..+.+|...|++++|+|++++|++++.|+.|++||+.+++ .+..+.+|...|++++|+| ++.+|+
T Consensus 329 ~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~----------~~~~~~~h~~~v~~l~~~~--~~~~l~ 396 (410)
T 1vyh_C 329 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR----------CMKTLNAHEHFVTSLDFHK--TAPYVV 396 (410)
T ss_dssp EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC----------CCEEEECCSSCEEEEEECS--SSSCEE
T ss_pred ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----------eEEEEcCCCCcEEEEEEcC--CCCEEE
Confidence 5678888999999999999999999999999999999998776 4455668999999999999 899999
Q ss_pred EecCCCeEEEEec
Q 048511 293 SGADEKVARVFEA 305 (351)
Q Consensus 293 s~~~dg~v~vw~~ 305 (351)
+|+.|+.|++|++
T Consensus 397 sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 397 TGSVDQTVKVWEC 409 (410)
T ss_dssp EEETTSEEEEEC-
T ss_pred EEeCCCcEEEEeC
Confidence 9999999999986
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3e-41 Score=291.13 Aligned_cols=256 Identities=13% Similarity=0.220 Sum_probs=217.2
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc---cceeec
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS---SANTQS 77 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~---~~~~~~ 77 (351)
+|+.||+|+|||..+ + ..+..+..|...|.+++|+ +++++|++++.|+.|++|++.+... ......
T Consensus 72 s~s~Dg~v~iWd~~~-~--~~~~~~~~~~~~v~~~~~s--------~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~ 140 (340)
T 1got_B 72 SASQDGKLIIWDSYT-T--NKVHAIPLRSSWVMTCAYA--------PSGNYVACGGLDNICSIYNLKTREGNVRVSRELA 140 (340)
T ss_dssp EEETTTEEEEEETTT-C--CEEEEEECSSSCEEEEEEC--------TTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEE
T ss_pred EEeCCCcEEEEECCC-C--CcceEeecCCccEEEEEEC--------CCCCEEEEEeCCCeEEEEECccCCCcceeEEEec
Confidence 478999999999988 6 3566788999999999999 8899999999999999999987542 222233
Q ss_pred ccccceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCe
Q 048511 78 TYRKEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT 149 (351)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~ 149 (351)
.+...+.++.|++++. +++++.++.+++|. .+.+|...|.+++|+ +++.+ |++|+.|+.
T Consensus 141 ~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~------~~~~~------l~sg~~d~~ 207 (340)
T 1got_B 141 GHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA------PDTRL------FVSGACDAS 207 (340)
T ss_dssp CCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC------TTSSE------EEEEETTSC
T ss_pred CCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEEC------CCCCE------EEEEeCCCc
Confidence 4556778888888776 67777777776664 467899999999999 78888 999999999
Q ss_pred EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc--cccccEEE
Q 048511 150 MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS--GHFAAVMD 227 (351)
Q Consensus 150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--~~~~~v~~ 227 (351)
|++||+++ +.....+. .|...|.+++|+|++++|++++.|+.|++||+++.+ .+..+. .+...|.+
T Consensus 208 v~~wd~~~--~~~~~~~~-----~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~-----~~~~~~~~~~~~~v~~ 275 (340)
T 1got_B 208 AKLWDVRE--GMCRQTFT-----GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ-----ELMTYSHDNIICGITS 275 (340)
T ss_dssp EEEEETTT--CSEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEEEECCTTCCSCEEE
T ss_pred EEEEECCC--CeeEEEEc-----CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc-----EEEEEccCCcccceEE
Confidence 99999998 76666665 788899999999999999999999999999998763 233332 33457999
Q ss_pred EEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511 228 ISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE 304 (351)
Q Consensus 228 v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~ 304 (351)
++|+|++++|++|+.|+.|++||+.+.. .+..+.+|...|++++|+| ++.+|++|+.|+.|+|||
T Consensus 276 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~----------~~~~~~~h~~~v~~~~~s~--dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 276 VSFSKSGRLLLAGYDDFNCNVWDALKAD----------RAGVLAGHDNRVSCLGVTD--DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCC----------EEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEEC
T ss_pred EEECCCCCEEEEECCCCeEEEEEcccCc----------EeeEeecCCCcEEEEEEcC--CCCEEEEEcCCccEEecC
Confidence 9999999999999999999999998776 5556678999999999999 999999999999999997
No 4
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.5e-40 Score=285.94 Aligned_cols=276 Identities=23% Similarity=0.330 Sum_probs=219.1
Q ss_pred CCCCCceEEEEEccCCCceEEEEe-eeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc-cceeecc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACE-LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS-SANTQST 78 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~-~~~~~~~ 78 (351)
+|+.|++|+|||++. ++...... ..+|.+.|++++|+ +++++|++++.|++|++|++..... .......
T Consensus 33 s~~~D~~i~iw~~~~-~~~~~~~~~~~~h~~~v~~~~~s--------p~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 103 (345)
T 3fm0_A 33 SCGGDRRIRIWGTEG-DSWICKSVLSEGHQRTVRKVAWS--------PCGNYLASASFDATTCIWKKNQDDFECVTTLEG 103 (345)
T ss_dssp EEETTSCEEEEEEET-TEEEEEEEECSSCSSCEEEEEEC--------TTSSEEEEEETTSCEEEEEECCC-EEEEEEECC
T ss_pred EEcCCCeEEEEEcCC-CcceeeeeeccccCCcEEEEEEC--------CCCCEEEEEECCCcEEEEEccCCCeEEEEEccC
Confidence 478899999999998 65443333 46899999999999 8899999999999999999987643 2233445
Q ss_pred cccceeeeEeeecCCeEEecCCceeEEEEE-----------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC
Q 048511 79 YRKEVISLASYIEGPVLVAGSSSYQVSVES-----------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD 147 (351)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d 147 (351)
+...+.+++|+|+++.|++++.++.+.+|. .+.+|...|.+++|+ +++.+ |++++.|
T Consensus 104 h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~------p~~~~------l~s~s~d 171 (345)
T 3fm0_A 104 HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH------PSQEL------LASASYD 171 (345)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEEC------SSSSC------EEEEETT
T ss_pred CCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEEC------CCCCE------EEEEeCC
Confidence 667899999999999999999998887764 356789999999999 78888 9999999
Q ss_pred CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc----------Ccccccc
Q 048511 148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID----------NWQPQKV 217 (351)
Q Consensus 148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~----------~~~~~~~ 217 (351)
+.|++||.+. +....... +.+|...|.+++|+|++++|++++.|++|++||....... .+.++..
T Consensus 172 ~~i~~w~~~~--~~~~~~~~---~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (345)
T 3fm0_A 172 DTVKLYREEE--DDWVCCAT---LEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICT 246 (345)
T ss_dssp SCEEEEEEET--TEEEEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEE
T ss_pred CcEEEEEecC--CCEEEEEE---ecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEE
Confidence 9999999987 44332222 2378899999999999999999999999999997543211 0112233
Q ss_pred ccc-ccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceE-EeccccccccceeEEEEeeeCCC-cEEEEe
Q 048511 218 PSG-HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWH-EVARPQVHGHDINCVTIIQGKGN-HRFVSG 294 (351)
Q Consensus 218 ~~~-~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~-~~l~s~ 294 (351)
+.+ |...|.+++|+|++..|++++.|+.|++|+........ ...+. ......+|...|++++|+| ++ .+||+|
T Consensus 247 ~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~--~~~~~~~~~~~~~h~~~V~~v~~~p--~~~~~laS~ 322 (345)
T 3fm0_A 247 LSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQ--QPTFSLTAHLHQAHSQDVNCVAWNP--KEPGLLASC 322 (345)
T ss_dssp ECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTT--SCCEEEEEEETTSSSSCEEEEEECS--SSTTEEEEE
T ss_pred ecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcc--eeeEEEEeeecccccCcEeEeEEeC--CCceEEEEc
Confidence 333 78899999999999999999999999999987653211 01111 1233457889999999999 65 599999
Q ss_pred cCCCeEEEEecC
Q 048511 295 ADEKVARVFEAP 306 (351)
Q Consensus 295 ~~dg~v~vw~~~ 306 (351)
+.||.|++|++.
T Consensus 323 s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 323 SDDGEVAFWKYQ 334 (345)
T ss_dssp ETTSCEEEEEEC
T ss_pred CCCCcEEEEEec
Confidence 999999999986
No 5
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.4e-40 Score=286.56 Aligned_cols=228 Identities=18% Similarity=0.164 Sum_probs=188.9
Q ss_pred CCCCCceEEEEEccCCCceE--EEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc
Q 048511 1 MGGLDNKIHLYRGQRTGKFV--RACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST 78 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~--~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~ 78 (351)
+|+.||+|+|||+++ ++.. ....+.+|.+.|++|+|+ +++++|++|+.|++|++||+.+++.+
T Consensus 98 ~~s~dg~v~lWd~~~-~~~~~~~~~~~~~H~~~V~~v~~s--------pdg~~l~sgs~d~~i~iwd~~~~~~~------ 162 (344)
T 4gqb_B 98 VASDSGAVELWELDE-NETLIVSKFCKYEHDDIVSTVSVL--------SSGTQAVSGSKDICIKVWDLAQQVVL------ 162 (344)
T ss_dssp EEETTSEEEEEEECT-TSSCEEEEEEEECCSSCEEEEEEC--------TTSSEEEEEETTSCEEEEETTTTEEE------
T ss_pred EEECCCEEEEEeccC-CCceeEeeccccCCCCCEEEEEEC--------CCCCEEEEEeCCCeEEEEECCCCcEE------
Confidence 478899999999998 5432 234566999999999999 88999999999999999999876432
Q ss_pred cccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCC-cccCCCceeEEeecCCeEEEEeccC
Q 048511 79 YRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDG-VSCQQPSSILSASMDKTMMIWQPEK 157 (351)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~-~~~~~~~~l~s~~~d~~i~iwd~~~ 157 (351)
..+.+|.+.|.+++|+| ++ .+ |++++.|++|++||+++
T Consensus 163 -----------------------------~~~~~h~~~V~~~~~~~------~~~~~------l~s~s~D~~v~iwd~~~ 201 (344)
T 4gqb_B 163 -----------------------------SSYRAHAAQVTCVAASP------HKDSV------FLSCSEDNRILLWDTRC 201 (344)
T ss_dssp -----------------------------EEECCCSSCEEEEEECS------SCTTE------EEEEETTSCEEEEETTS
T ss_pred -----------------------------EEEcCcCCceEEEEecC------CCCCc------eeeeccccccccccccc
Confidence 45678999999999994 54 46 89999999999999998
Q ss_pred CCcceEEEEEeccccccccceEEEEEcCC-CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCC-C
Q 048511 158 TTGIWMNVVTVGELSHSALGFYGGHWSPD-GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSS-D 235 (351)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~-~ 235 (351)
++....+. ...+...+.+++|+|+ +++|++|+.|+.|++||++++ +++..+.+|...|++++|+|++ +
T Consensus 202 --~~~~~~~~---~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~-----~~~~~~~~h~~~v~~v~fsp~g~~ 271 (344)
T 4gqb_B 202 --PKPASQIG---CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST-----SCVLSSAVHSQCVTGLVFSPHSVP 271 (344)
T ss_dssp --SSCEEECC-------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-------CCEEEECCSSCEEEEEECSSSSC
T ss_pred --cceeeeee---cceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC-----cEEEEEcCCCCCEEEEEEccCCCe
Confidence 65555443 1245567899999995 568899999999999999987 5688899999999999999998 5
Q ss_pred EEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCC-cEEEEecCCCeEEEEecCc
Q 048511 236 YLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGN-HRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 236 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~s~~~dg~v~vw~~~~ 307 (351)
+|++|+.|++|+|||+.+++ . ..+.+|...|++++|+| ++ .+|++++.|+.|++|+++.
T Consensus 272 ~lasgs~D~~i~vwd~~~~~----------~-~~~~~H~~~V~~v~~sp--~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 272 FLASLSEDCSLAVLDSSLSE----------L-FRSQAHRDFVRDATWSP--LNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp CEEEEETTSCEEEECTTCCE----------E-EEECCCSSCEEEEEECS--SSTTEEEEEETTSCEEEEECCC
T ss_pred EEEEEeCCCeEEEEECCCCc----------E-EEEcCCCCCEEEEEEeC--CCCeEEEEEcCCCeEEEEECCC
Confidence 79999999999999998765 2 23568999999999999 55 5778999999999999874
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.5e-40 Score=280.91 Aligned_cols=254 Identities=15% Similarity=0.209 Sum_probs=215.2
Q ss_pred EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511 20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS 99 (351)
Q Consensus 20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (351)
....++.+|.+.|++++|+ |++++|++++.||+|++||+.++.....+. .+...+.++.|+++++.+++++
T Consensus 4 ~~~~~~~~h~~~V~~~~fs--------p~~~~l~s~~~dg~v~lWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~s 74 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFH--------PTEPWVLTTLYSGRVELWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVGS 74 (304)
T ss_dssp CCEEEEEEECSCEEEEEEC--------SSSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEEE
T ss_pred eeEEeecCCCCceEEEEEC--------CCCCEEEEEcCCCcEEEEECCCCceeEEee-ccCCcEEEEEEeCCCCEEEEEC
Confidence 3456889999999999999 889999999999999999999876654443 3456788999999999999999
Q ss_pred CceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcce-EEEEEecc
Q 048511 100 SSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIW-MNVVTVGE 170 (351)
Q Consensus 100 ~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~ 170 (351)
.++.+++|. .+.+|.+.|.+++|+ +++.+ |++|+.|++|++||++. +.. ...+.
T Consensus 75 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~------~~~~~------l~sgs~D~~v~lWd~~~--~~~~~~~~~--- 137 (304)
T 2ynn_A 75 DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH------PTKPY------VLSGSDDLTVKLWNWEN--NWALEQTFE--- 137 (304)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEEC------SSSSE------EEEEETTSCEEEEEGGG--TTEEEEEEC---
T ss_pred CCCEEEEEECCCCcEEEEEeCCCCcEEEEEEc------CCCCE------EEEECCCCeEEEEECCC--Ccchhhhhc---
Confidence 999988765 467899999999999 78888 99999999999999987 432 33333
Q ss_pred ccccccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec--CCCEEEEEeCCCcEE
Q 048511 171 LSHSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR--SSDYLLSVSHDQTTR 247 (351)
Q Consensus 171 ~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp--~~~~l~s~~~dg~i~ 247 (351)
.|...|.+++|+| ++..|++++.|+.|++||++... .......+|...+..++|+| ++.+|++++.|+.|+
T Consensus 138 --~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~ 211 (304)
T 2ynn_A 138 --GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST----PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211 (304)
T ss_dssp --CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSS----CSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEE
T ss_pred --ccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC----ccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEE
Confidence 7888999999999 67899999999999999998763 12222345667899999987 778999999999999
Q ss_pred EEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511 248 VFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT 317 (351)
Q Consensus 248 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~ 317 (351)
+||+++++ .+..+.+|...|++++|+| ++.+|++|+.||.|++||+. ++.++++..+.
T Consensus 212 iWd~~~~~----------~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~ 270 (304)
T 2ynn_A 212 IWDYQTKS----------CVATLEGHMSNVSFAVFHP--TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL 270 (304)
T ss_dssp EEETTTTE----------EEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCSS
T ss_pred EEeCCCCc----------cceeeCCCCCCEEEEEECC--CCCEEEEEcCCCeEEEEECCCCceeeeccCCC
Confidence 99998876 5666778999999999999 89999999999999999987 77777776554
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.7e-40 Score=277.91 Aligned_cols=259 Identities=17% Similarity=0.213 Sum_probs=219.7
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.||+|++||+++ + ..+..+.+|..+|.+++|+ +++++|++|+.|++|++||+.+++...... .+.
T Consensus 30 s~~~dg~v~lWd~~~-~--~~~~~~~~~~~~v~~~~~~--------~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~-~h~ 97 (304)
T 2ynn_A 30 TTLYSGRVELWNYET-Q--VEVRSIQVTETPVRAGKFI--------ARKNWIIVGSDDFRIRVFNYNTGEKVVDFE-AHP 97 (304)
T ss_dssp EEETTSEEEEEETTT-T--EEEEEEECCSSCEEEEEEE--------GGGTEEEEEETTSEEEEEETTTCCEEEEEE-CCS
T ss_pred EEcCCCcEEEEECCC-C--ceeEEeeccCCcEEEEEEe--------CCCCEEEEECCCCEEEEEECCCCcEEEEEe-CCC
Confidence 478899999999998 6 5677889999999999999 889999999999999999999887665443 456
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEE---------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEE
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVES---------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMM 151 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~ 151 (351)
..+.+++|+|++.++++++.++.+++|. .+.+|...|.+++|+| .++.+ |++|+.|++|+
T Consensus 98 ~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p-----~~~~~------l~sgs~D~~v~ 166 (304)
T 2ynn_A 98 DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP-----KDPST------FASGCLDRTVK 166 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECT-----TCTTE------EEEEETTSEEE
T ss_pred CcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECC-----CCCCE------EEEEeCCCeEE
Confidence 7899999999999999999999987765 3668999999999995 46778 99999999999
Q ss_pred EEeccCCCcceEEEEEeccccccccceEEEEEcC--CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEE
Q 048511 152 IWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP--DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDIS 229 (351)
Q Consensus 152 iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~ 229 (351)
+||++. ......+. ..+...+..++|+| ++.+|++++.|+.|++||++++ .++..+.+|...|.+++
T Consensus 167 iwd~~~--~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~-----~~~~~~~~h~~~v~~~~ 235 (304)
T 2ynn_A 167 VWSLGQ--STPNFTLT----TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-----SCVATLEGHMSNVSFAV 235 (304)
T ss_dssp EEETTC--SSCSEEEE----CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT-----EEEEEEECCSSCEEEEE
T ss_pred EEECCC--CCccceec----cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC-----ccceeeCCCCCCEEEEE
Confidence 999987 44333333 24556788999987 6789999999999999999987 56888999999999999
Q ss_pred eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCc--EEEEecCCCeEEEEecC
Q 048511 230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNH--RFVSGADEKVARVFEAP 306 (351)
Q Consensus 230 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~l~s~~~dg~v~vw~~~ 306 (351)
|+|++++|++++.||+|++||+.+.+ ....+..|...+++++|+| ++. ++++|++|| +.+|++.
T Consensus 236 ~~p~~~~l~s~s~Dg~i~iWd~~~~~----------~~~~~~~~~~~~~~~~~~~--~~~~~~~asg~~~g-~~~~~~~ 301 (304)
T 2ynn_A 236 FHPTLPIIISGSEDGTLKIWNSSTYK----------VEKTLNVGLERSWCIATHP--TGRKNYIASGFDNG-FTVLSLG 301 (304)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTCC----------EEEEECCSSSSEEEEEECT--TCGGGCEEEEETTE-EEEEECC
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCc----------eeeeccCCCccEEEEEECC--CCCceEEEEecCCc-eEEEEec
Confidence 99999999999999999999998876 5556667888899999998 443 577777666 5667654
No 8
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-40 Score=283.71 Aligned_cols=271 Identities=21% Similarity=0.320 Sum_probs=207.7
Q ss_pred CCCCCceEEEEEccCCCceEEEEee-ee-cCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCc------cc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACEL-KG-HTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRG------SS 72 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~-~~-h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~------~~ 72 (351)
+|+.|++|++||+.. +.......+ .+ |.+.|++++|+ |++++|++++.|++|++||+.... ..
T Consensus 29 s~~~D~~i~lw~~~~-~~~~~~~~~~~~~h~~~v~~v~~s--------p~~~~las~s~D~~v~iw~~~~~~~~~~~~~~ 99 (330)
T 2hes_X 29 TGSTDRKIKLVSVKY-DDFTLIDVLDETAHKKAIRSVAWR--------PHTSLLAAGSFDSTVSIWAKEESADRTFEMDL 99 (330)
T ss_dssp EEESSSCEEEEECSS-SCCEEEEEECTTCCCSCEEEEEEC--------TTSSEEEEEETTSCEEEEEC-------CCCEE
T ss_pred EEcCCCEEEEEEecC-CCeEEEEEEecCCccCCEEEEEEC--------CCCCEEEEEeCCCcEEEEEcccCcCcccccee
Confidence 478999999999987 544555556 34 99999999999 889999999999999999986432 11
Q ss_pred ceeecccccceeeeEeeecCCeEEecCCceeEEEEEe------------ccccccceEEEEecCCCCCCCCCcccCCCce
Q 048511 73 ANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSS 140 (351)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~ 140 (351)
......+...+.+++|+|++++|++++.++.+++|.. +.+|...|.+++|+ |++.+
T Consensus 100 ~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~------p~~~~------ 167 (330)
T 2hes_X 100 LAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH------PSEAL------ 167 (330)
T ss_dssp EEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC------SSSSE------
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC------CCCCE------
Confidence 2233455678999999999999999999988877653 56799999999999 78888
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCC--CCEEEEEeeCCeEEEEEcccCccc---Ccccc
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD--GRSILAHGYGGAFHLWRNVGVDID---NWQPQ 215 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~---~~~~~ 215 (351)
|++++.|++|++||.......++..+. +|...|.+++|+|+ +..|++++.|++|++||++..... .+.+.
T Consensus 168 l~s~s~D~~i~iW~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 242 (330)
T 2hes_X 168 LASSSYDDTVRIWKDYDDDWECVAVLN-----GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCE 242 (330)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEEC-----CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEE
T ss_pred EEEEcCCCeEEEEECCCCCeeEEEEcc-----CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEe
Confidence 999999999999999872224444443 88899999999998 678999999999999999764211 01223
Q ss_pred ccccc-ccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEe-cccccccc-ceeEEEEeeeCCCcEEE
Q 048511 216 KVPSG-HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEV-ARPQVHGH-DINCVTIIQGKGNHRFV 292 (351)
Q Consensus 216 ~~~~~-~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~-~i~~~~~~~~~~~~~l~ 292 (351)
..+.. |...|.+++|++++ +|++++.||.|+|||...+. +..+ .....|.. .|++++|+|..++.+|+
T Consensus 243 ~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~--------~~~~~~~~~~h~~~~v~~v~~~~~~~~~~la 313 (330)
T 2hes_X 243 AILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGE--------WKVFAKRALCHGVYEINVVKWLELNGKTILA 313 (330)
T ss_dssp EECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTE--------EEEEEEESCTTTTSCEEEEEEC-----CCEE
T ss_pred eecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCc--------eEEEeccccccccceEEEEEEecCCCceEEE
Confidence 34444 88999999999765 79999999999999986653 1122 22346766 79999999833578999
Q ss_pred EecCCCeEEEEecC
Q 048511 293 SGADEKVARVFEAP 306 (351)
Q Consensus 293 s~~~dg~v~vw~~~ 306 (351)
+|+.||.|+||+++
T Consensus 314 s~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 314 TGGDDGIVNFWSLE 327 (330)
T ss_dssp EEETTSEEEEEEC-
T ss_pred EecCCCcEEEEEec
Confidence 99999999999976
No 9
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.7e-39 Score=281.55 Aligned_cols=259 Identities=14% Similarity=0.206 Sum_probs=219.0
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc-----ccee
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS-----SANT 75 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~-----~~~~ 75 (351)
+|+.||+|+|||..+ ++ ....+..|...|.+++|+ |++.+|++++.|+.+++|++..... ....
T Consensus 81 s~s~Dg~v~vWd~~~-~~--~~~~~~~~~~~v~~~~~s--------p~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~ 149 (354)
T 2pbi_B 81 SSSQDGKVIVWDSFT-TN--KEHAVTMPCTWVMACAYA--------PSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKS 149 (354)
T ss_dssp EEETTSEEEEEETTT-CC--EEEEEECSSSCCCEEEEC--------TTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEE
T ss_pred EEeCCCeEEEEECCC-CC--cceEEecCCCCEEEEEEC--------CCCCEEEEeeCCCCEEEEEEecccccccccccee
Confidence 578999999999988 53 455777899999999999 8899999999999999999865421 1222
Q ss_pred ecccccceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC
Q 048511 76 QSTYRKEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD 147 (351)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d 147 (351)
...+...+.++.|++++..+++++.++.+++|. .+.+|...|.+++|+|. +++++ |++|+.|
T Consensus 150 ~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~----~~g~~------l~sgs~D 219 (354)
T 2pbi_B 150 VAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS----ETGNT------FVSGGCD 219 (354)
T ss_dssp EEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCC----SSCCE------EEEEETT
T ss_pred eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeC----CCCCE------EEEEeCC
Confidence 234566788999999999999999999988765 46789999999999852 25678 9999999
Q ss_pred CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc--cccccE
Q 048511 148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS--GHFAAV 225 (351)
Q Consensus 148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--~~~~~v 225 (351)
+.|++||+++ +..+..+. .|...|.+++|+|++.+|++++.|++|++||++... .+..+. .+...+
T Consensus 220 g~v~~wd~~~--~~~~~~~~-----~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~-----~~~~~~~~~~~~~~ 287 (354)
T 2pbi_B 220 KKAMVWDMRS--GQCVQAFE-----THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR-----EVAIYSKESIIFGA 287 (354)
T ss_dssp SCEEEEETTT--CCEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEEEECCTTCCSCE
T ss_pred CeEEEEECCC--CcEEEEec-----CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----EEEEEcCCCcccce
Confidence 9999999998 77766665 788899999999999999999999999999998763 232222 234578
Q ss_pred EEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511 226 MDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE 304 (351)
Q Consensus 226 ~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~ 304 (351)
.+++|+|++++|++++.|+.|++||+.++. .+..+.+|...|++++|+| ++.+|++|+.|+.|+||+
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~----------~~~~l~~h~~~v~~l~~sp--dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKGS----------RVSILFGHENRVSTLRVSP--DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCS----------EEEEECCCSSCEEEEEECT--TSSCEEEEETTSEEEEEC
T ss_pred eEEEEeCCCCEEEEEECCCcEEEEECCCCc----------eEEEEECCCCcEEEEEECC--CCCEEEEEcCCCCEEecC
Confidence 999999999999999999999999998876 5556678999999999999 999999999999999996
No 10
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.2e-40 Score=290.07 Aligned_cols=265 Identities=14% Similarity=0.193 Sum_probs=217.2
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc------cce
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS------SAN 74 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~------~~~ 74 (351)
+|+.||+|+|||+.+ + .....+.+|...|.+++|+ +++++|++|+.|+.|++|++..... ...
T Consensus 83 s~s~D~~v~iWd~~~-~--~~~~~~~~h~~~v~~~~~s--------~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~ 151 (380)
T 3iz6_a 83 SASQDGRLIVWNALT-S--QKTHAIKLHCPWVMECAFA--------PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSR 151 (380)
T ss_dssp EEETTSEEEEEETTT-T--EEEEEEECCCTTCCCCEEC--------TTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCC
T ss_pred EEeCCCeEEEEECCC-C--ccceEEecCCCCEEEEEEC--------CCCCEEEEeeCCCcEEEEECCCCccccCCcccee
Confidence 578999999999988 6 5667889999999999999 8899999999999999999975321 222
Q ss_pred eecccccceeeeEeeecC-CeEEecCCceeEEEEEe--------c-----cccccceEEEEecCCCCCCCCCcccCCCce
Q 048511 75 TQSTYRKEVISLASYIEG-PVLVAGSSSYQVSVESL--------L-----IGHEDWVYSVQWEPPSTAPSDGVSCQQPSS 140 (351)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~--------~-----~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~ 140 (351)
....+...+.++.|.|++ ..+++++.++.+++|.. + .+|...|.++.|+| .++++
T Consensus 152 ~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~~~~------ 220 (380)
T 3iz6_a 152 VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS-----LNANM------ 220 (380)
T ss_dssp BCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS-----SSCCE------
T ss_pred eccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec-----CCCCE------
Confidence 334456677788888864 57899999999888753 2 57889999999986 57888
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG 220 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 220 (351)
|++|+.|++|++||++.. ...+..+. +|...|.+++|+|++++|++++.|++|++||++++. .+..+..
T Consensus 221 l~sgs~D~~v~~wd~~~~-~~~~~~~~-----~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~-----~~~~~~~ 289 (380)
T 3iz6_a 221 FISGSCDTTVRLWDLRIT-SRAVRTYH-----GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH-----QLQVYNR 289 (380)
T ss_dssp EEEEETTSCEEEEETTTT-CCCCEEEC-----CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE-----EEEEECC
T ss_pred EEEEECCCeEEEEECCCC-CcceEEEC-----CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc-----EEEEecc
Confidence 999999999999999842 34444444 788999999999999999999999999999998863 2333322
Q ss_pred -------ccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEe-ccccccccceeEEEEeeeCCCcEEE
Q 048511 221 -------HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEV-ARPQVHGHDINCVTIIQGKGNHRFV 292 (351)
Q Consensus 221 -------~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~l~ 292 (351)
+...|++++|+|++++|++|+.||.|++||+..++. ...+ ....+|...|++++|+| ++.+|+
T Consensus 290 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~-------~~~~~~~~~~h~~~v~~l~~s~--dg~~l~ 360 (380)
T 3iz6_a 290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEM-------VLNLGTLQNSHEGRISCLGLSS--DGSALC 360 (380)
T ss_dssp CCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCE-------EEEECCSCSSCCCCCCEEEECS--SSSEEE
T ss_pred cccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCce-------EEEEecccCCCCCceEEEEECC--CCCEEE
Confidence 233589999999999999999999999999987762 1122 22357889999999999 999999
Q ss_pred EecCCCeEEEEecCc
Q 048511 293 SGADEKVARVFEAPL 307 (351)
Q Consensus 293 s~~~dg~v~vw~~~~ 307 (351)
+|+.|+.|++|++.+
T Consensus 361 sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 361 TGSWDKNLKIWAFSG 375 (380)
T ss_dssp EECTTSCEEEEECCS
T ss_pred EeeCCCCEEEEecCC
Confidence 999999999999874
No 11
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.2e-39 Score=276.90 Aligned_cols=268 Identities=20% Similarity=0.294 Sum_probs=217.5
Q ss_pred CCCCCceEEEEEccCCCc--eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc
Q 048511 1 MGGLDNKIHLYRGQRTGK--FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST 78 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~--~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~ 78 (351)
+|+.|++|++|++..... ..++..+.+|...|++++|+ +++++|++++.|++|++||+.+++....+ ..
T Consensus 35 s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s--------~dg~~l~s~s~D~~v~~wd~~~~~~~~~~-~~ 105 (319)
T 3frx_A 35 SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT--------ADGAYALSASWDKTLRLWDVATGETYQRF-VG 105 (319)
T ss_dssp EEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEEC--------TTSSEEEEEETTSEEEEEETTTTEEEEEE-EC
T ss_pred EecCCccEEEecCCCCCccccccceEEeCCcccEEEEEEC--------CCCCEEEEEeCCCEEEEEECCCCCeeEEE-cc
Confidence 478999999999875111 24567899999999999999 88999999999999999999988765443 34
Q ss_pred cccceeeeEeeecCCeEEecCCceeEEEEE-------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEE
Q 048511 79 YRKEVISLASYIEGPVLVAGSSSYQVSVES-------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMM 151 (351)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~ 151 (351)
+...+.++.+++++..+++++.++.+++|. .+.+|...|.++.|.|......++.. |++++.|+.|+
T Consensus 106 h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~------l~s~~~d~~i~ 179 (319)
T 3frx_A 106 HKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT------IISAGNDKMVK 179 (319)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCE------EEEEETTSCEE
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccE------EEEEeCCCEEE
Confidence 567899999999999999999999998775 46789999999999964321124456 99999999999
Q ss_pred EEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEee
Q 048511 152 IWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWS 231 (351)
Q Consensus 152 iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~s 231 (351)
+||++. ......+. +|...|.+++|+|++++|++++.|+.|++||+.+. +++..+.. ...|.+++|+
T Consensus 180 ~wd~~~--~~~~~~~~-----~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~-~~~v~~~~~s 246 (319)
T 3frx_A 180 AWNLNQ--FQIEADFI-----GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK-----KAMYTLSA-QDEVFSLAFS 246 (319)
T ss_dssp EEETTT--TEEEEEEC-----CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-----EEEEEEEC-CSCEEEEEEC
T ss_pred EEECCc--chhheeec-----CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----cEEEEecC-CCcEEEEEEc
Confidence 999998 66555554 78899999999999999999999999999999886 44566654 4679999999
Q ss_pred cCCCEEEEEeCCCcEEEEcCCCccccccCccceEEec-----cccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 232 RSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVA-----RPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 232 p~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
|++.+|++++. ..+++|++..... ...+. ....|...+.+++|+| ++++|++|+.|+.|+|||+.
T Consensus 247 p~~~~la~~~~-~~i~v~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~sp--dg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 247 PNRYWLAAATA-TGIKVFSLDPQYL-------VDDLRPEFAGYSKAAEPHAVSLAWSA--DGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp SSSSEEEEEET-TEEEEEEETTEEE-------EEEECCCCTTCCGGGCCCEEEEEECT--TSSEEEEEETTSCEEEEEEE
T ss_pred CCCCEEEEEcC-CCcEEEEeCcCee-------eeccCccccccccCcCcceeEEEECC--CCCEEEEeecCceEEEEEEe
Confidence 99999988875 4599999976642 11111 1123556689999999 99999999999999999975
No 12
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.6e-39 Score=287.39 Aligned_cols=252 Identities=23% Similarity=0.289 Sum_probs=222.8
Q ss_pred EEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCc
Q 048511 22 ACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSS 101 (351)
Q Consensus 22 ~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 101 (351)
...+.+|.++|++++|+ |++.+|++|+.||+|++||+.+++....+ ..+...+.+++|++++.++++++.+
T Consensus 101 ~~~l~gh~~~V~~~~~~--------p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l-~~h~~~V~~v~~~~~~~~l~sgs~D 171 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFH--------PVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDHSGKLLASCSAD 171 (410)
T ss_dssp SCEEECCSSCEEEEEEC--------SSSSEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred eEeecccCCcEEEEEEc--------CCCCEEEEEeCCCeEEEEECCCCcEEEEE-eccCCcEEEEEEcCCCCEEEEEeCC
Confidence 34678999999999999 88999999999999999999988765443 3456789999999999999999999
Q ss_pred eeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccc
Q 048511 102 YQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSH 173 (351)
Q Consensus 102 ~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 173 (351)
+.+++|. .+.+|...|.+++|+ +++.+ |++|+.|++|++||+++ +.++..+. .
T Consensus 172 ~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~------p~~~~------l~s~s~D~~i~~wd~~~--~~~~~~~~-----~ 232 (410)
T 1vyh_C 172 MTIKLWDFQGFECIRTMHGHDHNVSSVSIM------PNGDH------IVSASRDKTIKMWEVQT--GYCVKTFT-----G 232 (410)
T ss_dssp SCCCEEETTSSCEEECCCCCSSCEEEEEEC------SSSSE------EEEEETTSEEEEEETTT--CCEEEEEE-----C
T ss_pred CeEEEEeCCCCceeEEEcCCCCCEEEEEEe------CCCCE------EEEEeCCCeEEEEECCC--CcEEEEEe-----C
Confidence 9887764 467899999999999 78888 99999999999999998 77777766 7
Q ss_pred cccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC--------------------
Q 048511 174 SALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS-------------------- 233 (351)
Q Consensus 174 ~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~-------------------- 233 (351)
|...|.+++|+|++.++++++.|+.|++||+.+. .+...+.+|...|.+++|+|+
T Consensus 233 h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (410)
T 1vyh_C 233 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK-----ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 307 (410)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-----CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------
T ss_pred CCccEEEEEECCCCCEEEEEcCCCeEEEEECCCC-----ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCC
Confidence 8889999999999999999999999999999886 457788899999999999996
Q ss_pred CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhc
Q 048511 234 SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKT 312 (351)
Q Consensus 234 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~ 312 (351)
+.+|++|+.|+.|++||++++. .+..+.+|...|++++|+| ++.+|++|+.|+.|++||+. ++.+.+
T Consensus 308 g~~l~sgs~D~~i~iwd~~~~~----------~~~~~~~h~~~v~~v~~~~--~g~~l~s~s~D~~i~vwd~~~~~~~~~ 375 (410)
T 1vyh_C 308 GPFLLSGSRDKTIKMWDVSTGM----------CLMTLVGHDNWVRGVLFHS--GGKFILSCADDKTLRVWDYKNKRCMKT 375 (410)
T ss_dssp CCEEEEEETTSEEEEEETTTTE----------EEEEEECCSSCEEEEEECS--SSSCEEEEETTTEEEEECCTTSCCCEE
T ss_pred CCEEEEEeCCCeEEEEECCCCc----------eEEEEECCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCceEEE
Confidence 6789999999999999998876 5566678999999999999 89999999999999999986 677777
Q ss_pred eeeccc
Q 048511 313 LNHATF 318 (351)
Q Consensus 313 ~~~~~~ 318 (351)
+.+|..
T Consensus 376 ~~~h~~ 381 (410)
T 1vyh_C 376 LNAHEH 381 (410)
T ss_dssp EECCSS
T ss_pred EcCCCC
Confidence 776653
No 13
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.3e-39 Score=278.43 Aligned_cols=258 Identities=16% Similarity=0.197 Sum_probs=218.2
Q ss_pred EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc-eeecccccceeeeEeeecCCeEEec
Q 048511 20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA-NTQSTYRKEVISLASYIEGPVLVAG 98 (351)
Q Consensus 20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 98 (351)
.....+++|.+.|++++|+ ++..+++.+|+||+.|++|++|++....... .....+...+.++.+++++..++++
T Consensus 23 ~~~~~~~~H~~~V~~v~~~----~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~ 98 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWG----TNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASS 98 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-----------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEE
T ss_pred heeeecccCCCcEEEEEEe----cCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEE
Confidence 3446678999999999999 2211357799999999999999998765322 2344567789999999999999999
Q ss_pred CCceeEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecc
Q 048511 99 SSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGE 170 (351)
Q Consensus 99 ~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 170 (351)
+.++.+++|.. +..|...+.+++|+ |++++ |++++.|+.|++||++. +.....+.
T Consensus 99 s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~s------pdg~~------l~~g~~dg~v~i~~~~~--~~~~~~~~--- 161 (321)
T 3ow8_A 99 SLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS------PDSQY------LATGTHVGKVNIFGVES--GKKEYSLD--- 161 (321)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCTTCCCCEEEC------TTSSE------EEEECTTSEEEEEETTT--CSEEEEEE---
T ss_pred eCCCcEEEEECCCCCEEEEEeCCCccEEEEEEC------CCCCE------EEEEcCCCcEEEEEcCC--CceeEEec---
Confidence 99999987753 45677789999999 78889 99999999999999998 66555554
Q ss_pred ccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEc
Q 048511 171 LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFA 250 (351)
Q Consensus 171 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd 250 (351)
.+...|.+++|+|++++|++++.|+.|++||++++ +++..+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 162 --~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd 234 (321)
T 3ow8_A 162 --TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG-----KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYD 234 (321)
T ss_dssp --CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-----EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEE
T ss_pred --CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC-----cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 66778999999999999999999999999999887 56788889999999999999999999999999999999
Q ss_pred CCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511 251 PWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT 317 (351)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~ 317 (351)
++... ....+.+|...|.+++|+| ++.+|++++.|+.|++||+. +..+.++.+|.
T Consensus 235 ~~~~~----------~~~~~~~h~~~v~~~~~sp--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~ 290 (321)
T 3ow8_A 235 VQHAN----------LAGTLSGHASWVLNVAFCP--DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ 290 (321)
T ss_dssp TTTCC----------EEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred CCCcc----------eeEEEcCCCCceEEEEECC--CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC
Confidence 98776 5556678999999999999 89999999999999999987 77777776654
No 14
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.5e-39 Score=300.28 Aligned_cols=266 Identities=17% Similarity=0.249 Sum_probs=216.7
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeec---
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQS--- 77 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~--- 77 (351)
+|+.|++|++||... + .....+.+|.+.|++++|+ |++++|++++.|++|++||+.+++.......
T Consensus 165 s~s~D~~v~lwd~~~-~--~~~~~l~~H~~~V~~v~fs--------pdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~ 233 (611)
T 1nr0_A 165 SGSDDNTVAIFEGPP-F--KFKSTFGEHTKFVHSVRYN--------PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL 233 (611)
T ss_dssp EEETTSCEEEEETTT-B--EEEEEECCCSSCEEEEEEC--------TTSSEEEEEETTSCEEEEETTTCCEEEECBCTTS
T ss_pred EEeCCCeEEEEECCC-C--eEeeeeccccCceEEEEEC--------CCCCEEEEEECCCcEEEEECCCCcEeeeeccccc
Confidence 478899999999887 5 5567899999999999999 8899999999999999999988876554432
Q ss_pred ---ccccceeeeEeeecCCeEEecCCceeEEEEEe---------------------------------------------
Q 048511 78 ---TYRKEVISLASYIEGPVLVAGSSSYQVSVESL--------------------------------------------- 109 (351)
Q Consensus 78 ---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------------------------------------------- 109 (351)
.+...+.+++|+|+++.|++++.++.+++|..
T Consensus 234 ~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~ 313 (611)
T 1nr0_A 234 KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPEL 313 (611)
T ss_dssp SSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTT
T ss_pred cccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCC
Confidence 46678999999999999999988887766542
Q ss_pred ------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEE-----------------
Q 048511 110 ------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVV----------------- 166 (351)
Q Consensus 110 ------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----------------- 166 (351)
+.+|...|++++|+ +++++ |++++.|++|++||+.+ +.....+
T Consensus 314 ~~~~~~~~gh~~~v~~l~~s------pdg~~------l~s~s~D~~v~~Wd~~~--~~~~~~~~~~h~~~v~~~~~s~~~ 379 (611)
T 1nr0_A 314 GSIDQVRYGHNKAITALSSS------ADGKT------LFSADAEGHINSWDIST--GISNRVFPDVHATMITGIKTTSKG 379 (611)
T ss_dssp TEEEEEECCCSSCEEEEEEC------TTSSE------EEEEETTSCEEEEETTT--CCEEECSSCSCSSCEEEEEECTTS
T ss_pred CCcceEEcCCCCCEEEEEEe------CCCCE------EEEEeCCCcEEEEECCC--CceeeecccCCcceEEEEEECCCC
Confidence 34788999999999 78999 99999999999999876 2221110
Q ss_pred -----------Eeccc-------------------------------------------------cccccceEEEEEcCC
Q 048511 167 -----------TVGEL-------------------------------------------------SHSALGFYGGHWSPD 186 (351)
Q Consensus 167 -----------~~~~~-------------------------------------------------~~~~~~i~~i~~~~~ 186 (351)
.+... ..+...+.+++|+|+
T Consensus 380 ~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spd 459 (611)
T 1nr0_A 380 DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSND 459 (611)
T ss_dssp CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTT
T ss_pred cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCC
Confidence 00000 012345789999999
Q ss_pred CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEE
Q 048511 187 GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHE 266 (351)
Q Consensus 187 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 266 (351)
+++|++++.|++|++||+.+... ..... .+|...|++++|+|++++|++++.|++|++||+.+.. +.
T Consensus 460 g~~lasgs~D~~v~lwd~~~~~~---~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~---------~~ 526 (611)
T 1nr0_A 460 KQFVAVGGQDSKVHVYKLSGASV---SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF---------EL 526 (611)
T ss_dssp SCEEEEEETTSEEEEEEEETTEE---EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT---------EE
T ss_pred CCEEEEeCCCCeEEEEEccCCce---eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC---------ce
Confidence 99999999999999999987531 12233 6799999999999999999999999999999997632 12
Q ss_pred ec--cccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 267 VA--RPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 267 ~~--~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
.. ....|...|++++|+| ++++|++|+.|+.|+||++.
T Consensus 527 ~~~~~~~~H~~~V~~v~fsp--dg~~lasgs~D~~v~lW~~~ 566 (611)
T 1nr0_A 527 AHTNSWTFHTAKVACVSWSP--DNVRLATGSLDNSVIVWNMN 566 (611)
T ss_dssp SCCCCCCCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETT
T ss_pred eeeeeeeecccceeEEEECC--CCCEEEEEECCCcEEEEECC
Confidence 22 2335889999999999 99999999999999999987
No 15
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.1e-38 Score=275.43 Aligned_cols=272 Identities=17% Similarity=0.261 Sum_probs=212.9
Q ss_pred CCCCCceEEEEEccCCCc-----eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccccee
Q 048511 1 MGGLDNKIHLYRGQRTGK-----FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANT 75 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~-----~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~ 75 (351)
+|+.|++|++||+.. ++ ..+...+.+|...|++++|+ +++.+|++++.|++|++||+.+++....+
T Consensus 44 sgs~D~~v~iWd~~~-~~~~~~~~~~~~~l~~h~~~V~~~~~~--------~~~~~l~s~s~D~~v~lwd~~~~~~~~~~ 114 (343)
T 2xzm_R 44 SGSRDKTVMIWKLYE-EEQNGYFGIPHKALTGHNHFVSDLALS--------QENCFAISSSWDKTLRLWDLRTGTTYKRF 114 (343)
T ss_dssp EEETTSCEEEEEECS-SCCSSBSEEEEEEECCCSSCEEEEEEC--------SSTTEEEEEETTSEEEEEETTSSCEEEEE
T ss_pred EEcCCCEEEEEECCc-CCcccccccccchhccCCCceEEEEEC--------CCCCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence 578899999999975 21 24567889999999999999 88999999999999999999988765443
Q ss_pred ecccccceeeeEeeecCCeEEecCCceeEEEEEec----------cccccceEEEEecCCCCC----CCCCcccCCCcee
Q 048511 76 QSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLL----------IGHEDWVYSVQWEPPSTA----PSDGVSCQQPSSI 141 (351)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----------~~h~~~v~~l~~~p~~~~----~~~~~~~~~~~~l 141 (351)
..+...+.+++|+|++..+++++.++.+++|... .+|...|.+++|+|.... .+.+.+ |
T Consensus 115 -~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------l 187 (343)
T 2xzm_R 115 -VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPY------F 187 (343)
T ss_dssp -ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCE------E
T ss_pred -cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCE------E
Confidence 3456789999999999999999999999888642 268889999999964310 011245 9
Q ss_pred EEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccc
Q 048511 142 LSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH 221 (351)
Q Consensus 142 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~ 221 (351)
++++.|+.|++||.. ......+. .|...|.+++|+|++++|++++.|+.|++||+.... .+...+ .+
T Consensus 188 ~s~~~d~~i~iwd~~---~~~~~~~~-----~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~----~~~~~~-~~ 254 (343)
T 2xzm_R 188 ASVGWDGRLKVWNTN---FQIRYTFK-----AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT----YPQREF-DA 254 (343)
T ss_dssp EEEETTSEEEEEETT---TEEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS----SCSEEE-EC
T ss_pred EEEcCCCEEEEEcCC---CceeEEEc-----CccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc----ccceee-cC
Confidence 999999999999943 44444444 788899999999999999999999999999995432 223333 24
Q ss_pred cccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceE-----EeccccccccceeEEEEeeeCCCcEEEEecC
Q 048511 222 FAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWH-----EVARPQVHGHDINCVTIIQGKGNHRFVSGAD 296 (351)
Q Consensus 222 ~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~ 296 (351)
...|.+++|+|++.+++++ .|+.|++||+.+...... ..+. ......+|...|++++|+| ++.+|++|+.
T Consensus 255 ~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~g~~l~sg~~ 329 (343)
T 2xzm_R 255 GSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPV--CTIEAEPITKAEGQKGKNPQCTSLAWNA--LGKKLFAGFT 329 (343)
T ss_dssp SSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSE--EECCCCSGGGBTTBCCSCCCEEEEEECS--SSCCEEEEET
T ss_pred CCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCce--EEeecCcchhhhhhcCCCCceEEEEECC--CCCeEEEecC
Confidence 5679999999999887655 588899999987652110 0000 0111236777899999999 9999999999
Q ss_pred CCeEEEEecC
Q 048511 297 EKVARVFEAP 306 (351)
Q Consensus 297 dg~v~vw~~~ 306 (351)
||.|++|+++
T Consensus 330 Dg~v~~w~~~ 339 (343)
T 2xzm_R 330 DGVIRTFSFE 339 (343)
T ss_dssp TSEEEEEEEE
T ss_pred CceEEEEEEE
Confidence 9999999975
No 16
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.6e-39 Score=284.54 Aligned_cols=268 Identities=17% Similarity=0.225 Sum_probs=219.6
Q ss_pred EEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeE
Q 048511 8 IHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLA 87 (351)
Q Consensus 8 i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 87 (351)
+..|+... ..+..++.+|.+.|++++|+ |++++|+||+.|++|++||+.+++....+. .+...+.+++
T Consensus 48 ~~~~~~~~---~~~~~~l~gH~~~V~~~~~s--------p~~~~l~s~s~D~~v~iWd~~~~~~~~~~~-~h~~~v~~~~ 115 (380)
T 3iz6_a 48 AVSFNPTD---LVCCRTLQGHSGKVYSLDWT--------PEKNWIVSASQDGRLIVWNALTSQKTHAIK-LHCPWVMECA 115 (380)
T ss_dssp CCCCCCCC---CEEEEEECCCSSCEEEEEEC--------TTSSCEEEEETTSEEEEEETTTTEEEEEEE-CCCTTCCCCE
T ss_pred ccccccce---eEEeecccccccEEEEEEEc--------CCCCEEEEEeCCCeEEEEECCCCccceEEe-cCCCCEEEEE
Confidence 33455544 36778999999999999999 889999999999999999998876654443 3456788999
Q ss_pred eeecCCeEEecCCceeEEEEEe---------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511 88 SYIEGPVLVAGSSSYQVSVESL---------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI 152 (351)
Q Consensus 88 ~~~~~~~l~~~~~~~~~~~~~~---------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i 152 (351)
|+|+++.+++++.++.++++.. +.+|.+.|.++.|.| .++.. |++|+.|++|++
T Consensus 116 ~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~-----~~~~~------l~s~s~D~~i~~ 184 (380)
T 3iz6_a 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVP-----DQETR------LITGSGDQTCVL 184 (380)
T ss_dssp ECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCS-----SSSSC------EEEECTTSCEEE
T ss_pred ECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEec-----CCCCE------EEEECCCCcEEE
Confidence 9999999999999998888753 568999999999996 34567 999999999999
Q ss_pred EeccCCCcceEEEEEeccccccccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEee
Q 048511 153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWS 231 (351)
Q Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~s 231 (351)
||+++ +..+..+......+|...|.+++|++ +++++++|+.|+.|++||++... .++..+.+|...|++++|+
T Consensus 185 wd~~~--~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~----~~~~~~~~h~~~v~~v~~~ 258 (380)
T 3iz6_a 185 WDVTT--GQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS----RAVRTYHGHEGDINSVKFF 258 (380)
T ss_dssp ECTTT--CCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC----CCCEEECCCSSCCCEEEEC
T ss_pred EEcCC--CcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC----cceEEECCcCCCeEEEEEe
Confidence 99998 76666554333457888999999987 78999999999999999998543 5577888999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccc----cccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-
Q 048511 232 RSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARP----QVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP- 306 (351)
Q Consensus 232 p~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~- 306 (351)
|++++|++++.|++|++||++++.. ...+... ..+...|++++|+| ++.+|++|+.||.|++||+.
T Consensus 259 p~~~~l~s~s~D~~i~lwd~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~g~~dg~i~vwd~~~ 329 (380)
T 3iz6_a 259 PDGQRFGTGSDDGTCRLFDMRTGHQ-------LQVYNREPDRNDNELPIVTSVAFSI--SGRLLFAGYSNGDCYVWDTLL 329 (380)
T ss_dssp TTSSEEEEECSSSCEEEEETTTTEE-------EEEECCCCSSSCCSSCSCSEEEECS--SSSEEEEECTTSCEEEEETTT
T ss_pred cCCCeEEEEcCCCeEEEEECCCCcE-------EEEecccccccccccCceEEEEECC--CCCEEEEEECCCCEEEEECCC
Confidence 9999999999999999999998762 1111111 11223489999999 99999999999999999976
Q ss_pred chhhhce
Q 048511 307 LSFLKTL 313 (351)
Q Consensus 307 ~~~~~~~ 313 (351)
++.+..+
T Consensus 330 ~~~~~~~ 336 (380)
T 3iz6_a 330 AEMVLNL 336 (380)
T ss_dssp CCEEEEE
T ss_pred CceEEEE
Confidence 5555444
No 17
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=9.4e-39 Score=275.52 Aligned_cols=255 Identities=20% Similarity=0.226 Sum_probs=216.0
Q ss_pred EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511 20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS 99 (351)
Q Consensus 20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (351)
....++.+|.+.|++++|+ +++++|++++.||+|++||+.++....... .+...+.+++|+|++.++++++
T Consensus 46 ~~~~~l~gH~~~v~~~~~s--------~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~ 116 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWG--------TDSRLLLSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCAYAPSGNYVACGG 116 (340)
T ss_dssp CEEEEECCCSSCEEEEEEC--------TTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSSCEEEEEECTTSSEEEEEE
T ss_pred hhheeecCCCCceEEEEEC--------CCCCEEEEEeCCCcEEEEECCCCCcceEee-cCCccEEEEEECCCCCEEEEEe
Confidence 4567899999999999999 889999999999999999998877654443 3456788999999999999999
Q ss_pred CceeEEEEE------------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEE
Q 048511 100 SSYQVSVES------------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVT 167 (351)
Q Consensus 100 ~~~~~~~~~------------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 167 (351)
.++.+.++. .+.+|...|.++.|+ +++ . +++++.|++|++||+++ +..+..+.
T Consensus 117 ~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~------~~~-~------l~s~s~d~~i~~wd~~~--~~~~~~~~ 181 (340)
T 1got_B 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL------DDN-Q------IVTSSGDTTCALWDIET--GQQTTTFT 181 (340)
T ss_dssp TTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEE------ETT-E------EEEEETTSCEEEEETTT--TEEEEEEC
T ss_pred CCCeEEEEECccCCCcceeEEEecCCCccEEEEEEC------CCC-c------EEEEECCCcEEEEECCC--CcEEEEEc
Confidence 888876654 356899999999999 444 3 89999999999999998 77666655
Q ss_pred eccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEE
Q 048511 168 VGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTR 247 (351)
Q Consensus 168 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~ 247 (351)
.|...|.+++|+|+++++++++.|+.|++||++++ .+...+.+|...|++++|+|++++|++++.|+.|+
T Consensus 182 -----~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~-----~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~ 251 (340)
T 1got_B 182 -----GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG-----MCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251 (340)
T ss_dssp -----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-----SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred -----CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC-----eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEE
Confidence 78889999999999999999999999999999886 55778889999999999999999999999999999
Q ss_pred EEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeeccc
Q 048511 248 VFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATF 318 (351)
Q Consensus 248 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~ 318 (351)
+||++.... .... ....+...|++++|+| ++.+|++|+.|+.|++||+. +..+..+.+|..
T Consensus 252 iwd~~~~~~-------~~~~-~~~~~~~~v~~~~~s~--~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~ 313 (340)
T 1got_B 252 LFDLRADQE-------LMTY-SHDNIICGITSVSFSK--SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 313 (340)
T ss_dssp EEETTTTEE-------EEEE-CCTTCCSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred EEECCCCcE-------EEEE-ccCCcccceEEEEECC--CCCEEEEECCCCeEEEEEcccCcEeeEeecCCC
Confidence 999987751 1111 1123334699999999 99999999999999999976 666777776653
No 18
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.1e-38 Score=274.75 Aligned_cols=255 Identities=19% Similarity=0.210 Sum_probs=216.2
Q ss_pred EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511 20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS 99 (351)
Q Consensus 20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (351)
....++.+|.+.|++++|+ +++++|+||+.||+|++||..++....... .+...+.+++|+|++..+++++
T Consensus 55 ~~~~~l~gH~~~V~~~~~s--------~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~-~~~~~v~~~~~sp~g~~lasg~ 125 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWC--------KDKRRIVSSSQDGKVIVWDSFTTNKEHAVT-MPCTWVMACAYAPSGCAIACGG 125 (354)
T ss_dssp CEEEEEECCSSCEEEEEEC--------TTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCEEEECTTSSEEEEES
T ss_pred EEEEEecCCCCeEEEEEEC--------CCCCEEEEEeCCCeEEEEECCCCCcceEEe-cCCCCEEEEEECCCCCEEEEee
Confidence 4567899999999999999 889999999999999999998776554433 2345788999999999999999
Q ss_pred CceeEEEEEe--------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEE
Q 048511 100 SSYQVSVESL--------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNV 165 (351)
Q Consensus 100 ~~~~~~~~~~--------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 165 (351)
.++.+.++.. +.+|...|.++.|+ +++.. |++++.|++|++||+++ +..+..
T Consensus 126 ~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~------~~~~~------l~t~s~D~~v~lwd~~~--~~~~~~ 191 (354)
T 2pbi_B 126 LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFT------NSDMQ------ILTASGDGTCALWDVES--GQLLQS 191 (354)
T ss_dssp TTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEEC------SSSSE------EEEEETTSEEEEEETTT--CCEEEE
T ss_pred CCCCEEEEEEeccccccccccceeeeccCCcEEEEEEe------CCCCE------EEEEeCCCcEEEEeCCC--CeEEEE
Confidence 9998877643 45689999999999 78888 99999999999999998 777777
Q ss_pred EEeccccccccceEEEEEcC--CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCC
Q 048511 166 VTVGELSHSALGFYGGHWSP--DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD 243 (351)
Q Consensus 166 ~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d 243 (351)
+. .|...|.+++|+| ++++|++++.|+.|++||++++ +++..+.+|...|++++|+|++.+|++++.|
T Consensus 192 ~~-----~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~-----~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D 261 (354)
T 2pbi_B 192 FH-----GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG-----QCVQAFETHESDVNSVRYYPSGDAFASGSDD 261 (354)
T ss_dssp EE-----CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC-----CEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred Ec-----CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-----cEEEEecCCCCCeEEEEEeCCCCEEEEEeCC
Confidence 66 7888999999987 4689999999999999999987 5677888999999999999999999999999
Q ss_pred CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511 244 QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT 317 (351)
Q Consensus 244 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~ 317 (351)
++|++||++.... .... ....+...+++++|+| ++.+|++|+.|+.|++||+. +..+..+.+|.
T Consensus 262 ~~v~lwd~~~~~~-------~~~~-~~~~~~~~~~~~~~s~--~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~ 326 (354)
T 2pbi_B 262 ATCRLYDLRADRE-------VAIY-SKESIIFGASSVDFSL--SGRLLFAGYNDYTINVWDVLKGSRVSILFGHE 326 (354)
T ss_dssp SCEEEEETTTTEE-------EEEE-CCTTCCSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCS
T ss_pred CeEEEEECCCCcE-------EEEE-cCCCcccceeEEEEeC--CCCEEEEEECCCcEEEEECCCCceEEEEECCC
Confidence 9999999987751 1111 1222344689999999 99999999999999999985 66666666654
No 19
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7.3e-39 Score=297.14 Aligned_cols=268 Identities=16% Similarity=0.118 Sum_probs=216.6
Q ss_pred CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccc-ceeecccccce
Q 048511 5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSS-ANTQSTYRKEV 83 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~ 83 (351)
+++|++|++.+ + .....+.+|.+.|++++|+ |++++||+|+.|++|+|||+.++... ......+...+
T Consensus 38 ~~~v~l~~~~~-~--~~~~~~~~h~~~v~~~~~s--------pdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v 106 (611)
T 1nr0_A 38 GTSVYTVPVGS-L--TDTEIYTEHSHQTTVAKTS--------PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPV 106 (611)
T ss_dssp TTEEEEEETTC-S--SCCEEECCCSSCEEEEEEC--------TTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCE
T ss_pred CCEEEEecCCC-c--ccCeEecCCCCceEEEEEC--------CCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCce
Confidence 56899999987 5 3456788999999999999 88999999999999999999765433 22334456789
Q ss_pred eeeEeeecCCeEEecCCc----eeEEEE------EeccccccceEEEEecCCCCCCCCCc-ccCCCceeEEeecCCeEEE
Q 048511 84 ISLASYIEGPVLVAGSSS----YQVSVE------SLLIGHEDWVYSVQWEPPSTAPSDGV-SCQQPSSILSASMDKTMMI 152 (351)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~----~~~~~~------~~~~~h~~~v~~l~~~p~~~~~~~~~-~~~~~~~l~s~~~d~~i~i 152 (351)
.+++|+|+++.+++++.+ +.+.++ ..+.+|...|.+++|+ |++. . |++|+.|++|++
T Consensus 107 ~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~------p~~~~~------l~s~s~D~~v~l 174 (611)
T 1nr0_A 107 KDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFK------PSRPFR------IISGSDDNTVAI 174 (611)
T ss_dssp EEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEEC------SSSSCE------EEEEETTSCEEE
T ss_pred EEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEEC------CCCCeE------EEEEeCCCeEEE
Confidence 999999999999876543 344443 3578999999999999 5554 6 999999999999
Q ss_pred EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc-------cccccE
Q 048511 153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS-------GHFAAV 225 (351)
Q Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-------~~~~~v 225 (351)
||.+. ++....+. +|...|.+++|+|++++|++++.|++|++||+.+++ +...+. +|...|
T Consensus 175 wd~~~--~~~~~~l~-----~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~-----~~~~~~~~~~~~~~h~~~V 242 (611)
T 1nr0_A 175 FEGPP--FKFKSTFG-----EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT-----KTGVFEDDSLKNVAHSGSV 242 (611)
T ss_dssp EETTT--BEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----EEEECBCTTSSSCSSSSCE
T ss_pred EECCC--CeEeeeec-----cccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc-----EeeeeccccccccccCCCE
Confidence 99887 66665554 899999999999999999999999999999998763 333332 799999
Q ss_pred EEEEeecCCCEEEEEeCCCcEEEEcCCCccccccC----------------------------cc-----ceEEeccccc
Q 048511 226 MDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMG----------------------------EN-----SWHEVARPQV 272 (351)
Q Consensus 226 ~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~----------------------------~~-----~~~~~~~~~~ 272 (351)
.+++|+|++++|++++.|++|++||+.+++..... .. .......+.+
T Consensus 243 ~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~g 322 (611)
T 1nr0_A 243 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG 322 (611)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcC
Confidence 99999999999999999999999999876532100 00 0012233457
Q ss_pred cccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chh
Q 048511 273 HGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSF 309 (351)
Q Consensus 273 ~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~ 309 (351)
|...|++++|+| ++++|++++.|+.|++||+. +..
T Consensus 323 h~~~v~~l~~sp--dg~~l~s~s~D~~v~~Wd~~~~~~ 358 (611)
T 1nr0_A 323 HNKAITALSSSA--DGKTLFSADAEGHINSWDISTGIS 358 (611)
T ss_dssp CSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCE
T ss_pred CCCCEEEEEEeC--CCCEEEEEeCCCcEEEEECCCCce
Confidence 888999999999 99999999999999999987 443
No 20
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.6e-39 Score=279.12 Aligned_cols=258 Identities=15% Similarity=0.180 Sum_probs=203.6
Q ss_pred CceEEEEEccCCCce--EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccccee---eccc
Q 048511 5 DNKIHLYRGQRTGKF--VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANT---QSTY 79 (351)
Q Consensus 5 dg~i~vw~~~~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~---~~~~ 79 (351)
|++|++|+..+ +.. .......+|...|++++|+ +++. +++++.||+|++||+.+++..... ...+
T Consensus 69 d~~v~~~~~~~-~~~~~~~~~~~~~~~~~V~~~~~s--------~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h 138 (357)
T 4g56_B 69 GGSIWVFKDPE-GAPNESLCTAGVQTEAGVTDVAWV--------SEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEH 138 (357)
T ss_dssp CEEEEEESSCC----CGGGCSEEEECSSCEEEEEEE--------TTTE-EEEEETTSCEEEC--------CCCCEEECCC
T ss_pred cCeEEEEECCC-CCcceeEecccCCCCCCEEEEEEc--------CCCC-EEEEECCCEEEEeeccccceeEEEeeccCCC
Confidence 88999999876 421 1123456799999999999 6665 556788999999999887654322 2345
Q ss_pred ccceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCC-cccCCCceeEEeecCCeE
Q 048511 80 RKEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDG-VSCQQPSSILSASMDKTM 150 (351)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~-~~~~~~~~l~s~~~d~~i 150 (351)
...+.+++|+|+++.|++++.++.+++|. .+.+|...|++++|+| ++ .+ +++++.|+.|
T Consensus 139 ~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~------~~~~~------~~s~~~dg~v 206 (357)
T 4g56_B 139 DDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP------GKDTI------FLSCGEDGRI 206 (357)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT------TCSSC------EEEEETTSCE
T ss_pred CCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcc------CCCce------eeeeccCCce
Confidence 67899999999999999999999887664 4678999999999994 44 46 8999999999
Q ss_pred EEEeccCCCcceEEEEEeccccccccceEEEEEcCCC-CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEE
Q 048511 151 MIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG-RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDIS 229 (351)
Q Consensus 151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~ 229 (351)
++||+++ +.....+. ...+...+.+++|+|++ .+|++++.|+.|++||++++ +++..+.+|...|++++
T Consensus 207 ~~wd~~~--~~~~~~~~---~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-----~~~~~~~~~~~~v~~l~ 276 (357)
T 4g56_B 207 LLWDTRK--PKPATRID---FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-----DSAQTSAVHSQNITGLA 276 (357)
T ss_dssp EECCTTS--SSCBCBCC---CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-----GGCEEECCCSSCEEEEE
T ss_pred EEEECCC--Cceeeeee---eccccccccchhhhhcccceEEEeecccceeEEECCCC-----cEeEEEeccceeEEEEE
Confidence 9999998 54443332 23566789999999974 68889999999999999887 56788889999999999
Q ss_pred eecCC-CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 230 WSRSS-DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 230 ~sp~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
|+|++ ++|++++.|++|+|||+++++ .+.. .+|...|++++|+| .++.+|++++.||.|++|+++
T Consensus 277 ~sp~~~~~lasgs~D~~i~iwd~~~~~----------~~~~-~~H~~~V~~vafsP-~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 277 YSYHSSPFLASISEDCTVAVLDADFSE----------VFRD-LSHRDFVTGVAWSP-LDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp ECSSSSCCEEEEETTSCEEEECTTSCE----------EEEE-CCCSSCEEEEEECS-SSTTEEEEEETTSCEEEEECC
T ss_pred EcCCCCCEEEEEeCCCEEEEEECCCCc----------EeEE-CCCCCCEEEEEEeC-CCCCEEEEEcCCCeEEEEECC
Confidence 99987 679999999999999998775 3332 37889999999997 468899999999999999986
No 21
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=5.4e-38 Score=289.68 Aligned_cols=265 Identities=23% Similarity=0.356 Sum_probs=228.4
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.|++|++|+... ..+..+.+|...|++++|+ +++++|++++.|++|++||...... . ....+.
T Consensus 279 ~~~~d~~i~~w~~~~----~~~~~~~~h~~~v~~~~~~--------~~~~~l~t~~~d~~i~~w~~~~~~~-~-~~~~~~ 344 (577)
T 2ymu_A 279 SASDDKTVKLWNRNG----QLLQTLTGHSSSVWGVAFS--------PDGQTIASASDDKTVKLWNRNGQHL-Q-TLTGHS 344 (577)
T ss_dssp EEETTSCEEEEETTS----CEEEEECCCSSCEEEEEEC--------TTSSEEEEEETTSCEEEEETTSCEE-E-EECCCS
T ss_pred EEeCCCEEEEEeCCC----cEEEEEecCCCCeEEEEEC--------CCCCEEEEEeCCCeEEEEeCCCCee-E-EEeCCC
Confidence 367899999999765 3566788999999999999 8899999999999999999875432 2 223446
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEE-------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVES-------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW 153 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 153 (351)
..+.+++++|+++.++++..++.+.++. .+.+|...|.+++|+ +++++ |++++.|+.|++|
T Consensus 345 ~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s------~dg~~------l~~~~~d~~v~~~ 412 (577)
T 2ymu_A 345 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFS------PDGQT------IASASDDKTVKLW 412 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEEC------TTSSC------EEEEETTSEEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEEC------CCCCE------EEEEeCCCEEEEE
Confidence 6788999999999999999888887653 467899999999999 78999 9999999999999
Q ss_pred eccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC
Q 048511 154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS 233 (351)
Q Consensus 154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 233 (351)
|.. ++.+..+. .|...|.+++|+|++++|++++.|+.|++||... +.+..+.+|...|++++|+|+
T Consensus 413 ~~~---~~~~~~~~-----~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~------~~~~~~~~~~~~v~~~~~spd 478 (577)
T 2ymu_A 413 NRN---GQLLQTLT-----GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG------QLLQTLTGHSSSVRGVAFSPD 478 (577)
T ss_dssp CTT---CCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS------CEEEEEECCSSCEEEEEECTT
T ss_pred eCC---CCEEEEec-----CCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC------CEEEEEcCCCCCEEEEEEcCC
Confidence 964 55555555 7888999999999999999999999999999754 456788899999999999999
Q ss_pred CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhce
Q 048511 234 SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTL 313 (351)
Q Consensus 234 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 313 (351)
+++|++++.|+.|++||. +++ .+..+.+|...|++++|+| ++++|++++.||.|+|||.+++.+.++
T Consensus 479 ~~~las~~~d~~i~iw~~-~~~----------~~~~~~~h~~~v~~l~~s~--dg~~l~s~~~dg~v~lwd~~~~~~~~~ 545 (577)
T 2ymu_A 479 GQTIASASDDKTVKLWNR-NGQ----------LLQTLTGHSSSVRGVAFSP--DGQTIASASDDKTVKLWNRNGQLLQTL 545 (577)
T ss_dssp SCEEEEEETTSEEEEEET-TSC----------EEEEEECCSSCEEEEEECT--TSSCEEEEETTSEEEEECTTSCEEEEE
T ss_pred CCEEEEEeCCCEEEEEcC-CCC----------EEEEEeCCCCCEEEEEEcC--CCCEEEEEECcCEEEEEeCCCCEEEEE
Confidence 999999999999999995 333 4555678999999999999 999999999999999999988888888
Q ss_pred eeccc
Q 048511 314 NHATF 318 (351)
Q Consensus 314 ~~~~~ 318 (351)
.+|.+
T Consensus 546 ~~h~~ 550 (577)
T 2ymu_A 546 TGHSS 550 (577)
T ss_dssp ECCSS
T ss_pred cCCCC
Confidence 87764
No 22
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.7e-38 Score=288.62 Aligned_cols=251 Identities=22% Similarity=0.361 Sum_probs=217.1
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.||+|++||... . .+..+.+|...|.+++|+ +++++|++++.|+.|++|+.. ++... ....+.
T Consensus 320 t~~~d~~i~~w~~~~-~---~~~~~~~~~~~v~~~~~s--------~~g~~l~~~~~dg~v~~~~~~-~~~~~-~~~~~~ 385 (577)
T 2ymu_A 320 SASDDKTVKLWNRNG-Q---HLQTLTGHSSSVWGVAFS--------PDGQTIASASDDKTVKLWNRN-GQLLQ-TLTGHS 385 (577)
T ss_dssp EEETTSCEEEEETTS-C---EEEEECCCSSCEEEEEEC--------TTSSEEEEEETTSEEEEEETT-CCEEE-EEECCS
T ss_pred EEeCCCeEEEEeCCC-C---eeEEEeCCCCCEEEEEEC--------CCCCEEEEEeCCCEEEEEcCC-CCEEE-EecCCC
Confidence 367899999999877 3 456788999999999999 889999999999999999964 33332 233456
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEE-------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVE-------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW 153 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 153 (351)
..+.+++|+|+++.+++++.++.+.++ ..+.+|...|++++|+ +++++ |++++.|+.|++|
T Consensus 386 ~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s------~d~~~------l~~~~~d~~v~~w 453 (577)
T 2ymu_A 386 SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS------PDDQT------IASASDDKTVKLW 453 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEEC------TTSSE------EEEEETTSEEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEEC------CCCCE------EEEEcCCCEEEEE
Confidence 788999999999999999988888665 4567899999999999 78888 9999999999999
Q ss_pred eccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC
Q 048511 154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS 233 (351)
Q Consensus 154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 233 (351)
|.. +..+..+. .|...|.+++|+|++++|++++.|+.|++||... +++..+.+|...|++++|+|+
T Consensus 454 ~~~---~~~~~~~~-----~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~------~~~~~~~~h~~~v~~l~~s~d 519 (577)
T 2ymu_A 454 NRN---GQLLQTLT-----GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG------QLLQTLTGHSSSVRGVAFSPD 519 (577)
T ss_dssp ETT---SCEEEEEE-----CCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS------CEEEEEECCSSCEEEEEECTT
T ss_pred ECC---CCEEEEEc-----CCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC------CEEEEEeCCCCCEEEEEEcCC
Confidence 964 45555555 7888999999999999999999999999999644 457788999999999999999
Q ss_pred CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511 234 SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE 304 (351)
Q Consensus 234 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~ 304 (351)
+++|++++.|+.|+|||. +++ .+..+.+|...|++++|+| |+++|++++.|+.|++||
T Consensus 520 g~~l~s~~~dg~v~lwd~-~~~----------~~~~~~~h~~~v~~~~fs~--dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 520 GQTIASASDDKTVKLWNR-NGQ----------LLQTLTGHSSSVWGVAFSP--DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SSCEEEEETTSEEEEECT-TSC----------EEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEEC
T ss_pred CCEEEEEECcCEEEEEeC-CCC----------EEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCEEEEeC
Confidence 999999999999999996 333 4556678999999999999 999999999999999997
No 23
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=9.9e-38 Score=269.63 Aligned_cols=259 Identities=21% Similarity=0.295 Sum_probs=211.9
Q ss_pred ceEEEEeeeecCC-ceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc--eeecccccceeeeEeeecCCe
Q 048511 18 KFVRACELKGHTD-WIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA--NTQSTYRKEVISLASYIEGPV 94 (351)
Q Consensus 18 ~~~~~~~~~~h~~-~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 94 (351)
.+.++.++.+|.+ .|++++|+ |++++||+|+.|++|+|||+..+.... .....+...+.+++|+|++++
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~s--------p~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~ 75 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWN--------PAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNY 75 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEEC--------TTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSE
T ss_pred cEEEeeeecCCCCCcEEEEEEC--------CCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCE
Confidence 3577889999998 99999999 889999999999999999998765432 223456778999999999999
Q ss_pred EEecCCceeEEEE----------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc-ceE
Q 048511 95 LVAGSSSYQVSVE----------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG-IWM 163 (351)
Q Consensus 95 l~~~~~~~~~~~~----------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~ 163 (351)
|++++.++.+.+| ..+.+|...|.+++|+ +++++ |++|+.|++|++||++.... ..+
T Consensus 76 l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~s------p~~~~------l~s~s~D~~v~iwd~~~~~~~~~~ 143 (345)
T 3fm0_A 76 LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA------PSGNL------LATCSRDKSVWVWEVDEEDEYECV 143 (345)
T ss_dssp EEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEEC------TTSSE------EEEEETTSCEEEEEECTTSCEEEE
T ss_pred EEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEe------CCCCE------EEEEECCCeEEEEECCCCCCeEEE
Confidence 9999988877665 3467899999999999 78889 99999999999999987321 122
Q ss_pred EEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCC
Q 048511 164 NVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD 243 (351)
Q Consensus 164 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d 243 (351)
..+ ..|...|.+++|+|++++|++++.|+.|++||++..+. .+...+.+|...|++++|+|++++|++++.|
T Consensus 144 ~~~-----~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D 215 (345)
T 3fm0_A 144 SVL-----NSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW---VCCATLEGHESTVWSLAFDPSGQRLASCSDD 215 (345)
T ss_dssp EEE-----CCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE---EEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEe-----cCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCCCceEEEEECCCCCEEEEEeCC
Confidence 222 37888999999999999999999999999999987531 3456788999999999999999999999999
Q ss_pred CcEEEEcCCCcccccc-----CccceEEeccccc-cccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 244 QTTRVFAPWKNVASLM-----GENSWHEVARPQV-HGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 244 g~i~vwd~~~~~~~~~-----~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
++|+|||......... ....+..+..+.+ |...|++++|++ ++..|++++.|+.|++|+..
T Consensus 216 ~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~~l~s~~~d~~i~vw~~~ 282 (345)
T 3fm0_A 216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ--LTGALATACGDDAIRVFQED 282 (345)
T ss_dssp SCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECT--TTCCEEEEETTSCEEEEEEC
T ss_pred CeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEec--CCCEEEEEeCCCeEEEEEeC
Confidence 9999999743321100 0123344444443 778899999999 89999999999999999976
No 24
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.3e-37 Score=265.15 Aligned_cols=259 Identities=22% Similarity=0.290 Sum_probs=218.0
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.||.|++|+..+ ++ ....+.+|...|.+++|+ +++++|++++.|+.|++||+.+++...... .+.
T Consensus 40 s~~~dg~i~iw~~~~-~~--~~~~~~~h~~~v~~~~~~--------~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~ 107 (312)
T 4ery_A 40 SSSADKLIKIWGAYD-GK--FEKTISGHKLGISDVAWS--------SDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHS 107 (312)
T ss_dssp EEETTSCEEEEETTT-CC--EEEEECCCSSCEEEEEEC--------TTSSEEEEEETTSEEEEEETTTCCEEEEEE-CCS
T ss_pred EeeCCCeEEEEeCCC-cc--cchhhccCCCceEEEEEc--------CCCCEEEEECCCCEEEEEECCCCcEEEEEc-CCC
Confidence 478899999999988 64 456788999999999999 889999999999999999999877655443 345
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI 152 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i 152 (351)
..+.++.|+|++..+++++.++.+.++. .+..|..+|.+++|+ +++++ |++++.|+.|++
T Consensus 108 ~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~------~~~~~------l~~~~~d~~i~~ 175 (312)
T 4ery_A 108 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN------RDGSL------IVSSSYDGLCRI 175 (312)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC------TTSSE------EEEEETTSCEEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEc------CCCCE------EEEEeCCCcEEE
Confidence 6788999999999999999998887764 456788999999999 78888 999999999999
Q ss_pred EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEE--EEe
Q 048511 153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD--ISW 230 (351)
Q Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~--v~~ 230 (351)
||+++ +..+..+. ..+...+..++|+|++++|++++.|+.|++||++++ +++..+.+|...+.. ..+
T Consensus 176 wd~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~ 244 (312)
T 4ery_A 176 WDTAS--GQCLKTLI----DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-----KCLKTYTGHKNEKYCIFANF 244 (312)
T ss_dssp EETTT--CCEEEEEC----CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT-----EEEEEECSSCCSSSCCCEEE
T ss_pred EECCC--CceeeEEe----ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC-----cEEEEEEecCCceEEEEEEE
Confidence 99998 66555443 245667999999999999999999999999999886 456666666654322 233
Q ss_pred -ecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEec--CCCeEEEEecC
Q 048511 231 -SRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGA--DEKVARVFEAP 306 (351)
Q Consensus 231 -sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~--~dg~v~vw~~~ 306 (351)
.+++.+|++|+.||.|++||+.+++ .+..+.+|...|.+++|+| ++.+|++++ .|+.|++|+.+
T Consensus 245 ~~~~~~~l~sg~~dg~i~vwd~~~~~----------~~~~~~~h~~~v~~~~~~p--~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 245 SVTGGKWIVSGSEDNLVYIWNLQTKE----------IVQKLQGHTDVVISTACHP--TENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ECSSSCEEEECCTTSCEEEEETTTCC----------EEEEECCCSSCEEEEEECS--SSSEEEEEECTTTCCEEEEECC
T ss_pred EeCCCcEEEEECCCCEEEEEECCCch----------hhhhhhccCCcEEEEeecC--cCCceEEEEccCCccEEEecCC
Confidence 3678899999999999999998876 5666778999999999999 899999886 79999999864
No 25
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.6e-37 Score=267.90 Aligned_cols=273 Identities=16% Similarity=0.189 Sum_probs=220.7
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceee-ccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQ-STY 79 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~-~~~ 79 (351)
+|+.||.|++||+.+ +++..+..+.+|...|++++|+ +++++|++++.||.|++||+.+++...... ..+
T Consensus 25 ~~~~d~~v~i~~~~~-~~~~~~~~~~~h~~~v~~~~~~--------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 95 (372)
T 1k8k_C 25 ICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWA--------PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI 95 (372)
T ss_dssp EECSSSEEEEEEEET-TEEEEEEEEECCSSCEEEEEEE--------TTTTEEEEEETTSCEEEEEEETTEEEEEEECCCC
T ss_pred EEeCCCEEEEEeCCC-CcEEeeeeecCCCCcccEEEEe--------CCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecC
Confidence 367899999999998 7666888999999999999999 889999999999999999998776433322 345
Q ss_pred ccceeeeEeeecCCeEEecCCceeEEEEEe------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC
Q 048511 80 RKEVISLASYIEGPVLVAGSSSYQVSVESL------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD 147 (351)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d 147 (351)
...+.++.|++++..++++..++.+.++.. ..+|...|.+++|+ +++++ |++++.|
T Consensus 96 ~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~------l~~~~~d 163 (372)
T 1k8k_C 96 NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH------PNSVL------LAAGSCD 163 (372)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC------TTSSE------EEEEETT
T ss_pred CCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEc------CCCCE------EEEEcCC
Confidence 668899999999999999998888766432 35678899999999 78888 9999999
Q ss_pred CeEEEEeccC----------------CCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccC
Q 048511 148 KTMMIWQPEK----------------TTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDN 211 (351)
Q Consensus 148 ~~i~iwd~~~----------------~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 211 (351)
+.|++||++. ..+..+..+. .|...|.+++|+|++++|++++.|+.|++||++++
T Consensus 164 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---- 234 (372)
T 1k8k_C 164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-----SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK---- 234 (372)
T ss_dssp SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-----CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT----
T ss_pred CCEEEEEcccccccccccccccccccchhhheEecC-----CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC----
Confidence 9999999752 1144444443 77889999999999999999999999999999987
Q ss_pred cccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCC--ccccccC---------------cc-------ceEEe
Q 048511 212 WQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWK--NVASLMG---------------EN-------SWHEV 267 (351)
Q Consensus 212 ~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~--~~~~~~~---------------~~-------~~~~~ 267 (351)
+++..+..|...|.+++|+|++++|+++ .|+.|++|++.. +...... .. .....
T Consensus 235 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (372)
T 1k8k_C 235 -MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSE 312 (372)
T ss_dssp -TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---
T ss_pred -ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccc
Confidence 5677888899999999999999988877 899999999987 3100000 00 00010
Q ss_pred ------ccc-cccccceeEEEEeeeCCC---cEEEEecCCCeEEEEecC
Q 048511 268 ------ARP-QVHGHDINCVTIIQGKGN---HRFVSGADEKVARVFEAP 306 (351)
Q Consensus 268 ------~~~-~~~~~~i~~~~~~~~~~~---~~l~s~~~dg~v~vw~~~ 306 (351)
..+ .+|...|++++|.+ .++ .+|++|+.||.|++|++.
T Consensus 313 ~~~~~~~~~~~~h~~~v~~~~~~~-~~g~~~~~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 313 GSAAAGAGLDSLHKNSVSQISVLS-GGKAKCSQFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp ------CCCSSSSSSCEEEEEEEE-STTTSCSEEEEEETTSEEEEEEHH
T ss_pred cCccccccccccccCCcceeEEec-CCCcceeeEEEecCCCceEEEEec
Confidence 222 48999999999886 355 899999999999999986
No 26
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5.5e-37 Score=259.44 Aligned_cols=253 Identities=17% Similarity=0.238 Sum_probs=201.6
Q ss_pred EeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCc-ccceeecccccceeeeEeeec--CCeEEecC
Q 048511 23 CELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRG-SSANTQSTYRKEVISLASYIE--GPVLVAGS 99 (351)
Q Consensus 23 ~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~ 99 (351)
..+.+|.+.|++++|+ +++++||||+.|++|++||+.... ........+...+.+++|+++ +..|++++
T Consensus 3 ~~~~~h~~~V~~~~~s--------~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s 74 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMD--------YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS 74 (297)
T ss_dssp EECCSCSSCEEEEEEC--------TTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred eeccCCcCceEEEEEC--------CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEc
Confidence 4678999999999999 889999999999999999997542 233344456778999999764 89999999
Q ss_pred CceeEEEEEe----------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEec
Q 048511 100 SSYQVSVESL----------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVG 169 (351)
Q Consensus 100 ~~~~~~~~~~----------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 169 (351)
.++.+++|.. +.+|...|.+++|+|. .++.+ |++++.|+.|++||++.........+
T Consensus 75 ~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~----~~g~~------l~s~s~d~~v~~wd~~~~~~~~~~~~--- 141 (297)
T 2pm7_B 75 YDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPH----EYGPM------LLVASSDGKVSVVEFKENGTTSPIII--- 141 (297)
T ss_dssp TTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCG----GGCSE------EEEEETTSEEEEEEBCSSSCBCCEEE---
T ss_pred CCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcC----CCCcE------EEEEECCCcEEEEEecCCCceeeeee---
Confidence 9999988764 3458889999999941 02678 99999999999999987321112223
Q ss_pred cccccccceEEEEEcCC-------------CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCC--
Q 048511 170 ELSHSALGFYGGHWSPD-------------GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSS-- 234 (351)
Q Consensus 170 ~~~~~~~~i~~i~~~~~-------------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~-- 234 (351)
..|...|.+++|+|+ +++|++++.|+.|++||+++... .+.+...+.+|...|.+++|+|++
T Consensus 142 --~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~-~~~~~~~l~~H~~~V~~v~~sp~~~~ 218 (297)
T 2pm7_B 142 --DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-TYVLESTLEGHSDWVRDVAWSPTVLL 218 (297)
T ss_dssp --ECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTT-EEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred --ecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc-eEEEEEEecCCCCceEEEEECCCCCC
Confidence 378889999999997 57999999999999999987531 012456788999999999999984
Q ss_pred -CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 235 -DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 235 -~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
.+|++++.|++|+|||++..... ..........|...|.+++|+| ++.+|++++.|+.|+||+..
T Consensus 219 ~~~las~s~D~~v~iWd~~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~--~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 219 RSYMASVSQDRTCIIWTQDNEQGP-----WKKTLLKEEKFPDVLWRASWSL--SGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SEEEEEEETTSCEEEEEESSTTSC-----CEEEESSSSCCSSCEEEEEECS--SSCCEEEEETTSCEEEEEEC
T ss_pred ceEEEEEECCCcEEEEEeCCCCCc-----cceeeeecccCCCcEEEEEECC--CCCEEEEEcCCCcEEEEEEC
Confidence 88999999999999999765310 0111222245777899999999 99999999999999999975
No 27
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.6e-37 Score=270.85 Aligned_cols=268 Identities=22% Similarity=0.362 Sum_probs=214.4
Q ss_pred CCceEEEEEccCCCceEEEEeeeecC------------------CceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEe
Q 048511 4 LDNKIHLYRGQRTGKFVRACELKGHT------------------DWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWK 65 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~~~~~~~~~h~------------------~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd 65 (351)
.|++++||++.+ ++. +..+..|. ..|++++|+ +++++|++|+.|++|++||
T Consensus 83 ~~~~v~i~~~~~-g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--------~dg~~l~s~~~d~~i~iwd 151 (393)
T 1erj_A 83 CNKTTQVYRVSD-GSL--VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS--------PDGKFLATGAEDRLIRIWD 151 (393)
T ss_dssp CBSCEEEEETTT-CCE--EEEECC-----------------CCCCBEEEEEEC--------TTSSEEEEEETTSCEEEEE
T ss_pred cCCcEEEEEecC-CCE--EEEecCccccccccccccccccCCCceeEEEEEEC--------CCCCEEEEEcCCCeEEEEE
Confidence 378999999988 643 34454443 249999999 8899999999999999999
Q ss_pred cCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEecc-------ccccceEEEEecCCCCCCCCCcccCCC
Q 048511 66 LALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLI-------GHEDWVYSVQWEPPSTAPSDGVSCQQP 138 (351)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~h~~~v~~l~~~p~~~~~~~~~~~~~~ 138 (351)
+.+++.... ...+...+.+++|+|++..+++++.++.+++|.... .+...+.+++|+| .++++
T Consensus 152 ~~~~~~~~~-~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~---- 221 (393)
T 1erj_A 152 IENRKIVMI-LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP-----GDGKY---- 221 (393)
T ss_dssp TTTTEEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECS-----TTCCE----
T ss_pred CCCCcEEEE-EccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEEC-----CCCCE----
Confidence 988765443 344567899999999999999999999998886422 3567799999995 48888
Q ss_pred ceeEEeecCCeEEEEeccCCCcceEEEEEec--cccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc------
Q 048511 139 SSILSASMDKTMMIWQPEKTTGIWMNVVTVG--ELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID------ 210 (351)
Q Consensus 139 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~------ 210 (351)
|++|+.|+.|++||+++ +..+..+... ....|...|.+++|+|++++|++++.|+.|++||+++....
T Consensus 222 --l~~~s~d~~v~iwd~~~--~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~ 297 (393)
T 1erj_A 222 --IAAGSLDRAVRVWDSET--GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 297 (393)
T ss_dssp --EEEEETTSCEEEEETTT--CCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred --EEEEcCCCcEEEEECCC--CcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCC
Confidence 99999999999999998 6655544211 12367889999999999999999999999999999764211
Q ss_pred -CcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeee----
Q 048511 211 -NWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQG---- 285 (351)
Q Consensus 211 -~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---- 285 (351)
...+...+.+|...|.+++|+|++.+|++++.|+.|++||+.++. .+..+.+|...|.+++|++.
T Consensus 298 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~----------~~~~l~~h~~~v~~v~~~~~~~~~ 367 (393)
T 1erj_A 298 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN----------PLLMLQGHRNSVISVAVANGSSLG 367 (393)
T ss_dssp ---CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC----------EEEEEECCSSCEEEEEECSSCTTC
T ss_pred CCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCe----------EEEEECCCCCCEEEEEecCCcCcC
Confidence 012345677899999999999999999999999999999998876 55666789999999999861
Q ss_pred CCCcEEEEecCCCeEEEEecC
Q 048511 286 KGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 286 ~~~~~l~s~~~dg~v~vw~~~ 306 (351)
+++.+|++|+.||.|+||++.
T Consensus 368 p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 368 PEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp TTCEEEEEEETTSEEEEEEEE
T ss_pred CCCCEEEEECCCCcEEECccc
Confidence 257899999999999999975
No 28
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.4e-37 Score=272.17 Aligned_cols=263 Identities=13% Similarity=0.059 Sum_probs=216.8
Q ss_pred CCCCCceEEEEEccCCCc----eEEEEeeeecCCceeEEEeeCCcccCCCCC----c---cEEEEeeCCCcEEEEecCCC
Q 048511 1 MGGLDNKIHLYRGQRTGK----FVRACELKGHTDWIRSLDFSLPVCTSGEAI----S---ILLVSSSQDKVIRIWKLALR 69 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~----~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~----~---~~l~t~~~dg~i~iwd~~~~ 69 (351)
+|+.||+|++|++.. ++ +..+..+.+|...|++++|+ ++ + ++|++++.|+.|++||+.++
T Consensus 31 s~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~--------~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~ 101 (397)
T 1sq9_A 31 SCSGDGYLKVWDNKL-LDNENPKDKSYSHFVHKSGLHHVDVL--------QAIERDAFELCLVATTSFSGDLLFYRITRE 101 (397)
T ss_dssp EEETTSEEEEEESBC-CTTCCGGGGEEEEECCTTCEEEEEEE--------EEEETTTEEEEEEEEEETTSCEEEEEEEEC
T ss_pred EEcCCCEEEEEECCC-cccccCCCcceEEecCCCcEEEEEEe--------cccccCCccccEEEEEcCCCCEEEEEccCC
Confidence 478899999999998 54 22456778999999999999 77 8 99999999999999999887
Q ss_pred cc-----cceeeccc----ccceeeeEee----ecCCe-EEecCCceeEEEEEec-------------------------
Q 048511 70 GS-----SANTQSTY----RKEVISLASY----IEGPV-LVAGSSSYQVSVESLL------------------------- 110 (351)
Q Consensus 70 ~~-----~~~~~~~~----~~~~~~~~~~----~~~~~-l~~~~~~~~~~~~~~~------------------------- 110 (351)
.. ........ ...+.++.|+ +++.. +++++.++.+.++...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (397)
T 1sq9_A 102 DETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVES 181 (397)
T ss_dssp TTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECC
T ss_pred cccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeecc
Confidence 65 33333222 4688999999 99999 9999888888776432
Q ss_pred -cccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccccc---ccceEEEEEcCC
Q 048511 111 -IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHS---ALGFYGGHWSPD 186 (351)
Q Consensus 111 -~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~i~~i~~~~~ 186 (351)
..|...|.+++|+ +++ + |++++.|+.|++||++. +..+..+.. ...| ...|.+++|+|+
T Consensus 182 ~~~~~~~i~~~~~~------~~~-~------l~~~~~dg~i~i~d~~~--~~~~~~~~~--~~~h~~~~~~i~~i~~~~~ 244 (397)
T 1sq9_A 182 PMTPSQFATSVDIS------ERG-L------IATGFNNGTVQISELST--LRPLYNFES--QHSMINNSNSIRSVKFSPQ 244 (397)
T ss_dssp SSSSCCCCCEEEEC------TTS-E------EEEECTTSEEEEEETTT--TEEEEEEEC--CC---CCCCCEEEEEECSS
T ss_pred ccCCCCCceEEEEC------CCc-e------EEEEeCCCcEEEEECCC--CceeEEEec--cccccccCCccceEEECCC
Confidence 2267789999999 677 8 99999999999999998 666666651 0116 788999999999
Q ss_pred CCEEEEEeeC---CeEEEEEcccCcccCccccccccc-------------ccccEEEEEeecCCCEEEEEeCCCcEEEEc
Q 048511 187 GRSILAHGYG---GAFHLWRNVGVDIDNWQPQKVPSG-------------HFAAVMDISWSRSSDYLLSVSHDQTTRVFA 250 (351)
Q Consensus 187 ~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~-------------~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd 250 (351)
+++|++++.| +.|++||+++. +++..+.. |...|.+++|+|++++|++++.|+.|++||
T Consensus 245 ~~~l~~~~~d~~~g~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 245 GSLLAIAHDSNSFGCITLYETEFG-----ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp TTEEEEEEEETTEEEEEEEETTTC-----CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred CCEEEEEecCCCCceEEEEECCCC-----cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 9999999999 99999999886 45677777 999999999999999999999999999999
Q ss_pred CCCccccccCccceEEecccc------cc---------------ccceeEEEEeeeCCC----------cEEEEecCCCe
Q 048511 251 PWKNVASLMGENSWHEVARPQ------VH---------------GHDINCVTIIQGKGN----------HRFVSGADEKV 299 (351)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~------~~---------------~~~i~~~~~~~~~~~----------~~l~s~~~dg~ 299 (351)
+++.+ .+..+. .| ...|++++|+| ++ .+|++++.||.
T Consensus 320 ~~~~~----------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~--~g~~~~~~~~~~~~l~s~~~dg~ 387 (397)
T 1sq9_A 320 VKTKE----------RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK--KGWRSGMGADLNESLCCVCLDRS 387 (397)
T ss_dssp TTTTE----------EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC--TTTSBSTTCTTSCEEEEEETTTE
T ss_pred cCCCc----------eeEEEecccCcccchhhhhccccccccccCCceeEEEecc--ccccccccccccceEEEecCCCc
Confidence 98876 333333 45 88899999999 76 79999999999
Q ss_pred EEEEecC
Q 048511 300 ARVFEAP 306 (351)
Q Consensus 300 v~vw~~~ 306 (351)
|++|++.
T Consensus 388 i~iw~~~ 394 (397)
T 1sq9_A 388 IRWFREA 394 (397)
T ss_dssp EEEEEEE
T ss_pred EEEEEcC
Confidence 9999976
No 29
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-37 Score=263.77 Aligned_cols=252 Identities=24% Similarity=0.304 Sum_probs=201.6
Q ss_pred EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc--cceeecc-cccceeeeEeeecCCeEE
Q 048511 20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS--SANTQST-YRKEVISLASYIEGPVLV 96 (351)
Q Consensus 20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~l~ 96 (351)
..+..+.+|.+.|++++|+ ++ +|++|+.|++|++||+..+.. ....... +...+.+++|+|++.+|+
T Consensus 5 ~~~~~~~~h~~~v~~~~~s--------~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~la 74 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFS--------QG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLA 74 (330)
T ss_dssp EEEEEEECCSSCEEEEEEE--------TT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEE
T ss_pred ccceeeccCCCceeeeccC--------CC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEE
Confidence 5678899999999999999 55 999999999999999987532 2222223 667899999999999999
Q ss_pred ecCCceeEEEEEe---------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCC--
Q 048511 97 AGSSSYQVSVESL---------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTT-- 159 (351)
Q Consensus 97 ~~~~~~~~~~~~~---------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-- 159 (351)
+++.++.+++|.. +.+|...|.+++|+ +++++ |++|+.|++|++||++...
T Consensus 75 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s------p~g~~------las~s~D~~v~iwd~~~~~~~ 142 (330)
T 2hes_X 75 AGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS------NDGYY------LATCSRDKSVWIWETDESGEE 142 (330)
T ss_dssp EEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEEC------TTSCE------EEEEETTSCEEEEECCTTCCC
T ss_pred EEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEEC------CCCCE------EEEEeCCCEEEEEeccCCCCC
Confidence 9999988877643 56899999999999 78889 9999999999999995421
Q ss_pred cceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC--CCEE
Q 048511 160 GIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS--SDYL 237 (351)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~--~~~l 237 (351)
...+..+. .|...|.+++|+|++.+|++++.|++|++||..++. +.++..+.+|...|.+++|+|+ +.+|
T Consensus 143 ~~~~~~~~-----~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l 214 (330)
T 2hes_X 143 YECISVLQ-----EHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD---WECVAVLNGHEGTVWSSDFDKTEGVFRL 214 (330)
T ss_dssp CEEEEEEC-----CCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---EEEEEEECCCSSCEEEEEECCSSSSCEE
T ss_pred eEEEEEec-----cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC---eeEEEEccCCCCcEEEEEecCCCCeeEE
Confidence 23333333 788899999999999999999999999999987653 2457788899999999999998 6789
Q ss_pred EEEeCCCcEEEEcCCCccccccCccceEEeccccc-cccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 238 LSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQV-HGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 238 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
++++.|++|++||+....... ...+.....+.. |...|++++|++ + .+|++++.||.|+||+..
T Consensus 215 ~s~s~D~~v~iw~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~v~~s~--~-~~l~s~~~dg~v~iw~~~ 279 (330)
T 2hes_X 215 CSGSDDSTVRVWKYMGDDEDD--QQEWVCEAILPDVHKRQVYNVAWGF--N-GLIASVGADGVLAVYEEV 279 (330)
T ss_dssp EEEETTSCEEEEEEEEECTTS--CEEEEEEEECCSCCSSCEEEEEECT--T-SCEEEEETTSCEEEEEEE
T ss_pred EEEeCCCeEEEEEecCCCccc--cceeEEeeecccccccceEEEEEcC--C-CEEEEEeCCCEEEEEEcC
Confidence 999999999999987543110 112334444443 888999999997 4 489999999999999975
No 30
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-37 Score=280.87 Aligned_cols=278 Identities=12% Similarity=0.069 Sum_probs=207.3
Q ss_pred CCCCCceEEEEEccCCCce--EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc-----
Q 048511 1 MGGLDNKIHLYRGQRTGKF--VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA----- 73 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~----- 73 (351)
+|+.|++|+||++.. ++. .....+.+|.+.|++|+|+|..... +++.+||+++.||+|++||+..+....
T Consensus 178 S~s~D~tI~iWd~~~-~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~--~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~ 254 (524)
T 2j04_B 178 KEKHSSCIQIFKMNT-STLHCVKVQTIVHSFGEVWDLKWHEGCHAP--HLVGCLSFVSQEGTINFLEIIDNATDVHVFKM 254 (524)
T ss_dssp ----CEEEEEEEEET-TTCCEEEEEEEEECCCSEEEEEECSSCCCS--SSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred cCCCCceEEEEEccC-CCCCceEEEEEEecCCcEEEEEECCCCCCC--CCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence 478999999999987 543 2234577889999999999210000 236799999999999999998664320
Q ss_pred -----eeecccccceeeeEeeecCCeEEecCCceeEEEEEe---------ccccccceEEE--EecCCCCCCCCC-cccC
Q 048511 74 -----NTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL---------LIGHEDWVYSV--QWEPPSTAPSDG-VSCQ 136 (351)
Q Consensus 74 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------~~~h~~~v~~l--~~~p~~~~~~~~-~~~~ 136 (351)
.....+...+.+++|++++ .|++|+.++.+.+|.. +.+|...|.++ .|+ +++ .+
T Consensus 255 ~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s------~~g~~~-- 325 (524)
T 2j04_B 255 CEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYS------DFEDTV-- 325 (524)
T ss_dssp CCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECC------TTSCCE--
T ss_pred ecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcC------CCCCeE--
Confidence 1223345678899998764 7999999999987753 56799999999 456 676 78
Q ss_pred CCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc--cceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccc
Q 048511 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA--LGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQP 214 (351)
Q Consensus 137 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 214 (351)
|++|+.|++|+|||+++ +.....+. .|. ..|.+++|+|+++.+++++.|++|++||+++. .+
T Consensus 326 ----laS~S~D~tvklWD~~~--~~~~~~~~-----~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~-----~~ 389 (524)
T 2j04_B 326 ----VSTVAVDGYFYIFNPKD--IATTKTTV-----SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA-----FA 389 (524)
T ss_dssp ----EEEEETTSEEEEECGGG--HHHHCEEE-----EECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT-----TC
T ss_pred ----EEEeccCCeEEEEECCC--CCcccccc-----cccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc-----cc
Confidence 99999999999999998 65554443 222 24789999999999999999999999999886 45
Q ss_pred ccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccccc------------------C------------cc--
Q 048511 215 QKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM------------------G------------EN-- 262 (351)
Q Consensus 215 ~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~------------------~------------~~-- 262 (351)
+..+.+|.+.|++|+|+|++++|++|+.|++|++||+........ . ..
T Consensus 390 ~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~ 469 (524)
T 2j04_B 390 VHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPL 469 (524)
T ss_dssp CEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-
T ss_pred ceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceeccc
Confidence 677889999999999999999999999999999999754321100 0 00
Q ss_pred --ceEEeccccccccceeEEEEeeeCC---CcEEEEecCCCeEEEEecCch
Q 048511 263 --SWHEVARPQVHGHDINCVTIIQGKG---NHRFVSGADEKVARVFEAPLS 308 (351)
Q Consensus 263 --~~~~~~~~~~~~~~i~~~~~~~~~~---~~~l~s~~~dg~v~vw~~~~~ 308 (351)
....+..+.+|...|++++|+| + +.++|+|+.||.|+||++.++
T Consensus 470 ~~~g~~~~~l~gh~~~V~~Vafsp--~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 470 TVNDVSKAKIDAHGINITCTKWNE--TSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp ------------CCCSCCCEEECC--STTTTTEEEEECTTSEEEEEECSCC
T ss_pred ccCCcceeeecCCCceEEEEECCC--CCCccHHHHhhccCceEEEEEcccc
Confidence 0112334556888899999999 6 459999999999999998754
No 31
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2e-36 Score=257.79 Aligned_cols=257 Identities=21% Similarity=0.343 Sum_probs=213.7
Q ss_pred eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEec
Q 048511 19 FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAG 98 (351)
Q Consensus 19 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 98 (351)
+....++.+|.+.|++++|+ +++++|++++.||.|++|++.+++..... ..+...+.+++|+|+++.++++
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s--------~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~ 83 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFS--------PNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSA 83 (312)
T ss_dssp CEEEEEECCCSSCEEEEEEC--------TTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEE
T ss_pred ceeEEEEcccCCcEEEEEEC--------CCCCEEEEeeCCCeEEEEeCCCcccchhh-ccCCCceEEEEEcCCCCEEEEE
Confidence 46677899999999999999 88999999999999999999887655433 3456678999999999999999
Q ss_pred CCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecc
Q 048511 99 SSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGE 170 (351)
Q Consensus 99 ~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 170 (351)
+.++.++++. .+.+|...|.+++|+ +++++ |++++.|+.|++||+++ +..+..+.
T Consensus 84 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~------~~~~~------l~s~~~d~~i~iwd~~~--~~~~~~~~--- 146 (312)
T 4ery_A 84 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN------PQSNL------IVSGSFDESVRIWDVKT--GKCLKTLP--- 146 (312)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC------SSSSE------EEEEETTSCEEEEETTT--CCEEEEEC---
T ss_pred CCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc------CCCCE------EEEEeCCCcEEEEECCC--CEEEEEec---
Confidence 9999887764 467899999999999 78888 99999999999999998 66666554
Q ss_pred ccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccc-ccccccEEEEEeecCCCEEEEEeCCCcEEEE
Q 048511 171 LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP-SGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249 (351)
Q Consensus 171 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vw 249 (351)
.|...|.+++|+|+++++++++.|+.|++||+++++ .+..+ ..+...+..++|+|++++|++++.|+.|++|
T Consensus 147 --~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 219 (312)
T 4ery_A 147 --AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219 (312)
T ss_dssp --CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----EEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred --CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----eeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEE
Confidence 678899999999999999999999999999998863 33333 4466789999999999999999999999999
Q ss_pred cCCCccccccCccceEEeccccccccceeE--EEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecccc
Q 048511 250 APWKNVASLMGENSWHEVARPQVHGHDINC--VTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATFQ 319 (351)
Q Consensus 250 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~ 319 (351)
|+++++ .+..+..|.....+ ..+++ .++.+|++|+.||.|++||+. ++.++.+.+|...
T Consensus 220 d~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~ 281 (312)
T 4ery_A 220 DYSKGK----------CLKTYTGHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 281 (312)
T ss_dssp ETTTTE----------EEEEECSSCCSSSCCCEEEEC-SSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSC
T ss_pred ECCCCc----------EEEEEEecCCceEEEEEEEEe-CCCcEEEEECCCCEEEEEECCCchhhhhhhccCCc
Confidence 998876 44444555544332 33443 378899999999999999987 7777777776543
No 32
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.5e-36 Score=259.10 Aligned_cols=270 Identities=17% Similarity=0.229 Sum_probs=212.5
Q ss_pred CCCCCceEEEEEccCCC--ceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc
Q 048511 1 MGGLDNKIHLYRGQRTG--KFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST 78 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~--~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~ 78 (351)
||+.||+|+|||+.... ...+...+.+|...|++++|+ +++++|++++.|+.|++|+........... .
T Consensus 56 S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s--------~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~-~ 126 (340)
T 4aow_A 56 SASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS--------SDGQFALSGSWDGTLRLWDLTTGTTTRRFV-G 126 (340)
T ss_dssp EEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEEC--------TTSSEEEEEETTSEEEEEETTTTEEEEEEE-C
T ss_pred EEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEEC--------CCCCEEEEEcccccceEEeecccceeeeec-C
Confidence 57899999999987621 124667889999999999999 889999999999999999998765544332 3
Q ss_pred cccceeeeEeeecCCeEEecCCceeEEEEE---------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCe
Q 048511 79 YRKEVISLASYIEGPVLVAGSSSYQVSVES---------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT 149 (351)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~ 149 (351)
.........+.+++..+++++.++.+.++. ...+|...+.+++|++.. ...+ +++++.|+.
T Consensus 127 ~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~------~~s~~~d~~ 196 (340)
T 4aow_A 127 HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS----SNPI------IVSCGWDKL 196 (340)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS----SSCE------EEEEETTSC
T ss_pred CCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC----CCcE------EEEEcCCCE
Confidence 345667778889999999998888776653 356788999999999531 2345 889999999
Q ss_pred EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEE
Q 048511 150 MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDIS 229 (351)
Q Consensus 150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~ 229 (351)
|++||++. +.....+. .|...|.+++|+|++++|++++.|+.|++||+++. .++..+.. ...|.+++
T Consensus 197 i~i~d~~~--~~~~~~~~-----~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~-----~~~~~~~~-~~~v~~~~ 263 (340)
T 4aow_A 197 VKVWNLAN--CKLKTNHI-----GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG-----KHLYTLDG-GDIINALC 263 (340)
T ss_dssp EEEEETTT--TEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-----EEEEEEEC-SSCEEEEE
T ss_pred EEEEECCC--CceeeEec-----CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC-----ceeeeecC-CceEEeee
Confidence 99999998 76666654 78889999999999999999999999999999886 44555554 46799999
Q ss_pred eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 230 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
|+|++.+ ++++.|+.|++||++....... ............|...|++++|+| ++++|++|+.||.|+|||++
T Consensus 264 ~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~~s~--dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 264 FSPNRYW-LCAATGPSIKIWDLEGKIIVDE-LKQEVISTSSKAEPPQCTSLAWSA--DGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp ECSSSSE-EEEEETTEEEEEETTTTEEEEE-ECCC-------CCCCCEEEEEECT--TSSEEEEEETTSCEEEEEEE
T ss_pred cCCCCce-eeccCCCEEEEEECCCCeEEEe-ccccceeeeccCCCCCEEEEEECC--CCCEEEEEeCCCEEEEEeCC
Confidence 9998764 5566799999999987652110 000011123346788899999999 99999999999999999976
No 33
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.6e-36 Score=285.60 Aligned_cols=264 Identities=20% Similarity=0.261 Sum_probs=212.7
Q ss_pred CCCCCceEEEEEccCCCc--eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc
Q 048511 1 MGGLDNKIHLYRGQRTGK--FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST 78 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~--~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~ 78 (351)
||+.|++|++|++..... -.....+.+|...|++++|+ +++++|+||+.|++|++||+.++...... ..
T Consensus 400 s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--------~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~-~~ 470 (694)
T 3dm0_A 400 SASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS--------SDGQFALSGSWDGELRLWDLAAGVSTRRF-VG 470 (694)
T ss_dssp EEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEEC--------TTSSEEEEEETTSEEEEEETTTTEEEEEE-EC
T ss_pred EEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEEC--------CCCCEEEEEeCCCcEEEEECCCCcceeEE-eC
Confidence 578999999999876221 14556789999999999999 88999999999999999999987665443 34
Q ss_pred cccceeeeEeeecCCeEEecCCceeEEEEEe-----------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC
Q 048511 79 YRKEVISLASYIEGPVLVAGSSSYQVSVESL-----------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD 147 (351)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d 147 (351)
+...+.+++|++++..+++++.++.+++|.. ..+|...|.+++|+|.. .... |++++.|
T Consensus 471 h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~~~------l~s~s~d 540 (694)
T 3dm0_A 471 HTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT----LQPT------IVSASWD 540 (694)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS----SSCE------EEEEETT
T ss_pred CCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC----Ccce------EEEEeCC
Confidence 5678999999999999999999999988753 24688899999999521 1246 9999999
Q ss_pred CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEE
Q 048511 148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD 227 (351)
Q Consensus 148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~ 227 (351)
++|++||++. +.....+. .|...|.+++|+|++++|++++.|+.|++||++++ +.+..+. +...|.+
T Consensus 541 ~~v~vwd~~~--~~~~~~~~-----~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~-----~~~~~~~-~~~~v~~ 607 (694)
T 3dm0_A 541 KTVKVWNLSN--CKLRSTLA-----GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG-----KKLYSLE-ANSVIHA 607 (694)
T ss_dssp SCEEEEETTT--CCEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT-----EEEECCB-CSSCEEE
T ss_pred CeEEEEECCC--CcEEEEEc-----CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-----ceEEEec-CCCcEEE
Confidence 9999999998 66666554 78899999999999999999999999999999887 3455554 4467999
Q ss_pred EEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecc----------------ccccccceeEEEEeeeCCCcEE
Q 048511 228 ISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVAR----------------PQVHGHDINCVTIIQGKGNHRF 291 (351)
Q Consensus 228 v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~~~~~~~~~~~~~l 291 (351)
++|+|++.+|++++ |+.|+|||++++.... .+.. ...+...+++++|+| ++.+|
T Consensus 608 ~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp--dg~~l 677 (694)
T 3dm0_A 608 LCFSPNRYWLCAAT-EHGIKIWDLESKSIVE-------DLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA--DGSTL 677 (694)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEE-------EECCCCC----------------CCCCEEEEEECT--TSSEE
T ss_pred EEEcCCCcEEEEEc-CCCEEEEECCCCCChh-------hhccccccccccccccccccCCceeEEeeeEEEcC--CCCEE
Confidence 99999998887765 6679999998876211 1110 001112378899999 99999
Q ss_pred EEecCCCeEEEEecC
Q 048511 292 VSGADEKVARVFEAP 306 (351)
Q Consensus 292 ~s~~~dg~v~vw~~~ 306 (351)
++|+.||.|+||++.
T Consensus 678 ~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 678 FSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEETTSEEEEEEC-
T ss_pred EEEcCCCeEEEEecc
Confidence 999999999999975
No 34
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-36 Score=260.34 Aligned_cols=258 Identities=17% Similarity=0.191 Sum_probs=220.7
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.||.|++||+.+ + ..+..+.+|.+.|++++|+ +++++|++++.||.|++||+.+++...... ..
T Consensus 49 ~~~~dg~i~vwd~~~-~--~~~~~~~~h~~~v~~~~~~--------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~ 115 (369)
T 3zwl_B 49 SCSKDSSASVWYSLN-G--ERLGTLDGHTGTIWSIDVD--------CFTKYCVTGSADYSIKLWDVSNGQCVATWK--SP 115 (369)
T ss_dssp EEESSSCEEEEETTT-C--CEEEEECCCSSCEEEEEEC--------TTSSEEEEEETTTEEEEEETTTCCEEEEEE--CS
T ss_pred EEeCCCEEEEEeCCC-c--hhhhhhhhcCCcEEEEEEc--------CCCCEEEEEeCCCeEEEEECCCCcEEEEee--cC
Confidence 467899999999988 6 4567889999999999999 889999999999999999999887766555 55
Q ss_pred cceeeeEeeecCCeEEecCCc-----eeEEEEEec-------------------ccccc--ceEEEEecCCCCCCCCCcc
Q 048511 81 KEVISLASYIEGPVLVAGSSS-----YQVSVESLL-------------------IGHED--WVYSVQWEPPSTAPSDGVS 134 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~-------------------~~h~~--~v~~l~~~p~~~~~~~~~~ 134 (351)
..+.++.|++++..++++..+ +.+.++..- ..|.. .+.+++|+ +++++
T Consensus 116 ~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 189 (369)
T 3zwl_B 116 VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWS------TKGKY 189 (369)
T ss_dssp SCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEEC------GGGCE
T ss_pred CCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEc------CCCCE
Confidence 688999999999999998877 777666532 23333 89999999 78888
Q ss_pred cCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccc
Q 048511 135 CQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQP 214 (351)
Q Consensus 135 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 214 (351)
|++++.|+.|++||++.. ......+. .|...|.+++|+|++++|++++.|+.|++||+++. ..
T Consensus 190 ------l~~~~~dg~i~i~d~~~~-~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-----~~ 252 (369)
T 3zwl_B 190 ------IIAGHKDGKISKYDVSNN-YEYVDSID-----LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL-----QV 252 (369)
T ss_dssp ------EEEEETTSEEEEEETTTT-TEEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-----CE
T ss_pred ------EEEEcCCCEEEEEECCCC-cEeEEEEe-----cCCCceeEEEECCCCCEEEEecCCceEEEEECCCC-----ce
Confidence 999999999999999862 23344444 67889999999999999999999999999999886 34
Q ss_pred ccccccccccEEEEEeecCCCEEEEEeCCC--------------cEEEEcCCCccccccCccceEEeccccccccceeEE
Q 048511 215 QKVPSGHFAAVMDISWSRSSDYLLSVSHDQ--------------TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCV 280 (351)
Q Consensus 215 ~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg--------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (351)
+..+. +...+..++|+|+++++++++.++ .+++||...++ .+..+..|...|+++
T Consensus 253 ~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~----------~~~~~~~~~~~v~~~ 321 (369)
T 3zwl_B 253 LKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE----------EIGRVQGHFGPLNTV 321 (369)
T ss_dssp EEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCC----------EEEEEECCSSCEEEE
T ss_pred eeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc----------chhheecccCcEEEE
Confidence 55554 778899999999999999999888 89999998876 556667899999999
Q ss_pred EEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511 281 TIIQGKGNHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 281 ~~~~~~~~~~l~s~~~dg~v~vw~~~~ 307 (351)
+|+| ++.+|++++.||.|++|+++.
T Consensus 322 ~~s~--~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 322 AISP--QGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp EECT--TSSEEEEEETTSEEEEEEECH
T ss_pred EECC--CCCEEEEEcCCCeEEEEECcc
Confidence 9999 999999999999999999984
No 35
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=8.5e-37 Score=263.02 Aligned_cols=246 Identities=17% Similarity=0.151 Sum_probs=193.9
Q ss_pred eecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCC-------c---ccceeecccccceeeeEeeecCCeE
Q 048511 26 KGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALR-------G---SSANTQSTYRKEVISLASYIEGPVL 95 (351)
Q Consensus 26 ~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~l 95 (351)
..|...|.+++|+ ++|++|++++ |+++++||.... . ............+.+++|++++ .+
T Consensus 27 ~~~~~~v~~~~fs--------~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l 96 (344)
T 4gqb_B 27 ACMERQLEAARYR--------SDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GI 96 (344)
T ss_dssp SSCCSEEEEEEEC--------TTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EE
T ss_pred ccccCCEEEEEEC--------CCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eE
Confidence 3577889999999 8899999888 778888874211 0 0111111224568899999986 56
Q ss_pred EecCCceeEEEEEe------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceE
Q 048511 96 VAGSSSYQVSVESL------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWM 163 (351)
Q Consensus 96 ~~~~~~~~~~~~~~------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 163 (351)
++++.++.+++|.. +.+|.+.|++++|+ +++++ |++|+.|++|++||+++ +..+
T Consensus 97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~s------pdg~~------l~sgs~d~~i~iwd~~~--~~~~ 162 (344)
T 4gqb_B 97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVL------SSGTQ------AVSGSKDICIKVWDLAQ--QVVL 162 (344)
T ss_dssp EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEEC------TTSSE------EEEEETTSCEEEEETTT--TEEE
T ss_pred EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEEC------CCCCE------EEEEeCCCeEEEEECCC--CcEE
Confidence 67888888888753 34799999999999 78999 99999999999999998 7777
Q ss_pred EEEEeccccccccceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcccCccccccc--ccccccEEEEEeecC-CCEEEE
Q 048511 164 NVVTVGELSHSALGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDIDNWQPQKVP--SGHFAAVMDISWSRS-SDYLLS 239 (351)
Q Consensus 164 ~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~~~~~~v~~v~~sp~-~~~l~s 239 (351)
..+. +|...|.+++|+|++. +|++++.|++|++||+++++ +...+ ..+...+.+++|+|+ +++|++
T Consensus 163 ~~~~-----~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~p~~~~~l~s 232 (344)
T 4gqb_B 163 SSYR-----AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK-----PASQIGCSAPGYLPTSLAWHPQQSEVFVF 232 (344)
T ss_dssp EEEC-----CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS-----CEEECC----CCCEEEEEECSSCTTEEEE
T ss_pred EEEc-----CcCCceEEEEecCCCCCceeeeccccccccccccccc-----eeeeeecceeeccceeeeecCCCCcceEE
Confidence 7665 8999999999999885 78999999999999998873 34443 345667999999995 578899
Q ss_pred EeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCC-cEEEEecCCCeEEEEecCchhhhceeecc
Q 048511 240 VSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGN-HRFVSGADEKVARVFEAPLSFLKTLNHAT 317 (351)
Q Consensus 240 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~s~~~dg~v~vw~~~~~~~~~~~~~~ 317 (351)
|+.|+.|+|||+++++ .+..+.+|...|++++|+| ++ .+|++|+.|+.|+|||+....+..+.+|.
T Consensus 233 g~~dg~v~~wd~~~~~----------~~~~~~~h~~~v~~v~fsp--~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~ 299 (344)
T 4gqb_B 233 GDENGTVSLVDTKSTS----------CVLSSAVHSQCVTGLVFSP--HSVPFLASLSEDCSLAVLDSSLSELFRSQAHR 299 (344)
T ss_dssp EETTSEEEEEESCC------------CCEEEECCSSCEEEEEECS--SSSCCEEEEETTSCEEEECTTCCEEEEECCCS
T ss_pred eccCCcEEEEECCCCc----------EEEEEcCCCCCEEEEEEcc--CCCeEEEEEeCCCeEEEEECCCCcEEEEcCCC
Confidence 9999999999998876 5566778999999999999 66 68999999999999998844444455554
No 36
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.1e-37 Score=263.24 Aligned_cols=242 Identities=16% Similarity=0.269 Sum_probs=190.7
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.|++|+|||+.+ ++...+..+.+|.+.|++++|+ +. .++++|+||+.|++|++||+.++...
T Consensus 30 sgs~D~~v~lwd~~~-~~~~~~~~l~gH~~~V~~v~~~----~~--~~~~~l~s~s~D~~v~iWd~~~~~~~-------- 94 (316)
T 3bg1_A 30 TCSSDRSVKIFDVRN-GGQILIADLRGHEGPVWQVAWA----HP--MYGNILASCSYDRKVIIWREENGTWE-------- 94 (316)
T ss_dssp EEETTTEEEEEEEET-TEEEEEEEEECCSSCEEEEEEC----CG--GGSSCEEEEETTSCEEEECCSSSCCC--------
T ss_pred EEeCCCeEEEEEecC-CCcEEEEEEcCCCccEEEEEeC----CC--CCCCEEEEEECCCEEEEEECCCCcce--------
Confidence 478999999999988 6555678899999999999998 21 24789999999999999999865321
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG 160 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 160 (351)
....+.+|...|.+++|+|. .++.+ |++|+.|++|++||++. +
T Consensus 95 -------------------------~~~~~~~h~~~V~~v~~~p~----~~g~~------lasgs~D~~i~lwd~~~--~ 137 (316)
T 3bg1_A 95 -------------------------KSHEHAGHDSSVNSVCWAPH----DYGLI------LACGSSDGAISLLTYTG--E 137 (316)
T ss_dssp -------------------------EEEEECCCSSCCCEEEECCT----TTCSC------EEEECSSSCEEEEEECS--S
T ss_pred -------------------------EEEEccCCCCceEEEEECCC----CCCcE------EEEEcCCCCEEEEecCC--C
Confidence 11235679999999999952 12678 99999999999999987 3
Q ss_pred ceEEEEEeccccccccceEEEEEcCC-----------------CCEEEEEeeCCeEEEEEcccCcccCcccccccccccc
Q 048511 161 IWMNVVTVGELSHSALGFYGGHWSPD-----------------GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFA 223 (351)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~-----------------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 223 (351)
..... ......|...+.+++|+|+ +++|++++.|+.|++||++.... +.++..+.+|..
T Consensus 138 ~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~--~~~~~~l~~h~~ 213 (316)
T 3bg1_A 138 GQWEV--KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ--WKEEQKLEAHSD 213 (316)
T ss_dssp SCEEE--CCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC--EEEEECCBCCSS
T ss_pred CCcce--eeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc--cceeeecccCCC
Confidence 21111 1223477888999999997 46899999999999999965321 235677889999
Q ss_pred cEEEEEeecCC----CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCe
Q 048511 224 AVMDISWSRSS----DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKV 299 (351)
Q Consensus 224 ~v~~v~~sp~~----~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~ 299 (351)
.|.+++|+|++ .+|++++.|++|+|||+...... .+ ....+..|...|++++|+| ++.+|++++.|+.
T Consensus 214 ~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~-----~~-~~~~~~~~~~~v~~v~~sp--~g~~las~~~D~~ 285 (316)
T 3bg1_A 214 WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSN-----TW-SPKLLHKFNDVVWHVSWSI--TANILAVSGGDNK 285 (316)
T ss_dssp CEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCC-----CC-BCCEEEECSSCEEEEEECT--TTCCEEEEESSSC
T ss_pred ceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCcccc-----ch-hhhhhhcCCCcEEEEEEcC--CCCEEEEEcCCCe
Confidence 99999999986 78999999999999998763210 00 1112235677899999999 9999999999999
Q ss_pred EEEEecC
Q 048511 300 ARVFEAP 306 (351)
Q Consensus 300 v~vw~~~ 306 (351)
|+||+..
T Consensus 286 v~lw~~~ 292 (316)
T 3bg1_A 286 VTLWKES 292 (316)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 9999975
No 37
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.3e-37 Score=273.98 Aligned_cols=264 Identities=15% Similarity=0.092 Sum_probs=200.2
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceee-ccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQ-STY 79 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~-~~~ 79 (351)
+|+.||+|+|||+.. ++......+.+|.+.|++|+|+ | .++.+|+||+.||+|++||+.+........ ...
T Consensus 137 sGs~dg~i~lWd~~~-~~~~~~~~~~gH~~~V~~l~f~----p---~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 208 (435)
T 4e54_B 137 VGSKGGDIMLWNFGI-KDKPTFIKGIGAGGSITGLKFN----P---LNTNQFYASSMEGTTRLQDFKGNILRVFASSDTI 208 (435)
T ss_dssp EEETTSCEEEECSSC-CSCCEEECCCSSSCCCCEEEEC----S---SCTTEEEEECSSSCEEEEETTSCEEEEEECCSSC
T ss_pred EEeCCCEEEEEECCC-CCceeEEEccCCCCCEEEEEEe----C---CCCCEEEEEeCCCEEEEeeccCCceeEEeccCCC
Confidence 478999999999987 5555667788999999999999 2 267899999999999999998654322111 122
Q ss_pred ccceeeeEeeecCCeEEecCCceeEEEEE-------eccccccceEEEEecCCCCCCCCC-cccCCCceeEEeecCCeEE
Q 048511 80 RKEVISLASYIEGPVLVAGSSSYQVSVES-------LLIGHEDWVYSVQWEPPSTAPSDG-VSCQQPSSILSASMDKTMM 151 (351)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~h~~~v~~l~~~p~~~~~~~~-~~~~~~~~l~s~~~d~~i~ 151 (351)
...+.++++++++.++++++.++.+.++. .+.+|...|.+++|+| ++ .+ |++++.|+.|+
T Consensus 209 ~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p------~~~~~------~~s~s~d~~v~ 276 (435)
T 4e54_B 209 NIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNP------CCDWF------LATASVDQTVK 276 (435)
T ss_dssp SCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECT------TCSSE------EEEEETTSBCC
T ss_pred CccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecC------CCceE------EEEecCcceee
Confidence 33567899999999999999999988775 3678999999999994 44 46 88999999999
Q ss_pred EEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccc------cE
Q 048511 152 IWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFA------AV 225 (351)
Q Consensus 152 iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~------~v 225 (351)
+||++.. .....+ .....|...|.+++|+|++++|++++.|+.|++||+.+.. ....+..|.. .+
T Consensus 277 iwd~~~~--~~~~~~--~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~ 347 (435)
T 4e54_B 277 IWDLRQV--RGKASF--LYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWD-----CPLGLIPHPHRHFQHLTP 347 (435)
T ss_dssp EEETTTC--CSSSCC--SBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSS-----SEEEECCCCCCCCSSSCC
T ss_pred EEecccc--cccceE--EEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCc-----cceEEeccccccccccee
Confidence 9999873 222221 1123688899999999999999999999999999998763 2333322221 22
Q ss_pred EEEEeecCCCEEEEEe------------CCCcEEEEcCCCccccccCccceEEecc-ccccccceeEE-EEeeeCCCcEE
Q 048511 226 MDISWSRSSDYLLSVS------------HDQTTRVFAPWKNVASLMGENSWHEVAR-PQVHGHDINCV-TIIQGKGNHRF 291 (351)
Q Consensus 226 ~~v~~sp~~~~l~s~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~-~~~~~~~~~~l 291 (351)
....|+|++.+++++. .++.|++||..+++ .+.. ...|...|.++ +|+| ++.+|
T Consensus 348 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~----------~~~~l~~~~~~~v~s~~~fsp--dg~~l 415 (435)
T 4e54_B 348 IKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK----------MMCQLYDPESSGISSLNEFNP--MGDTL 415 (435)
T ss_dssp CBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC----------EEEEECCSSCCCCCCEEEECT--TSSCE
T ss_pred EEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc----------EEEEEeCCCCCcEEEEEEECC--CCCEE
Confidence 3345666666655543 34679999998886 3332 33677778887 6999 89999
Q ss_pred EEecCCCeEEEEecC
Q 048511 292 VSGADEKVARVFEAP 306 (351)
Q Consensus 292 ~s~~~dg~v~vw~~~ 306 (351)
++|+ |+.|+||+++
T Consensus 416 asg~-d~~i~iW~~~ 429 (435)
T 4e54_B 416 ASAM-GYHILIWSQQ 429 (435)
T ss_dssp EEEC-SSEEEECCCC
T ss_pred EEEc-CCcEEEEECC
Confidence 9886 7899999987
No 38
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.9e-36 Score=266.63 Aligned_cols=259 Identities=17% Similarity=0.282 Sum_probs=210.5
Q ss_pred CCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccc
Q 048511 3 GLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKE 82 (351)
Q Consensus 3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 82 (351)
+.|++|+|||+.+ ++...+..+.+|...|++|+|+ +++++||+|+.||+|++||+.+++.+.... .+...
T Consensus 122 gld~tV~lWd~~t-g~~~~~~~~~~~~~~V~sv~fs--------pdg~~lasgs~Dg~v~iWd~~~~~~~~~~~-~h~~~ 191 (420)
T 4gga_A 122 ALDNSVYLWSASS-GDILQLLQMEQPGEYISSVAWI--------KEGNYLAVGTSSAEVQLWDVQQQKRLRNMT-SHSAR 191 (420)
T ss_dssp EETTEEEEEETTT-CCEEEEEECCSTTCCEEEEEEC--------TTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSC
T ss_pred EeCCEEEEEECCC-CCEEEEEEecCCCCcEEEEEEC--------CCCCEEEEEECCCeEEEEEcCCCcEEEEEe-CCCCc
Confidence 4589999999999 8776667778899999999999 889999999999999999999887665443 33344
Q ss_pred eeeeEeeecCCeEEecCCceeEEEE---------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511 83 VISLASYIEGPVLVAGSSSYQVSVE---------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW 153 (351)
Q Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 153 (351)
+.+ ++.++..+++++.++.+..+ ..+.+|...+..+.|+ +++.+ +++++.|+.+++|
T Consensus 192 v~~--~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~------~~g~~------l~s~~~D~~v~i~ 257 (420)
T 4gga_A 192 VGS--LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA------PDGRH------LASGGNDNLVNVW 257 (420)
T ss_dssp EEE--EEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC------TTSSE------EEEEETTSCEEEE
T ss_pred eEE--EeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeec------CCCCe------eeeeeccccceEE
Confidence 444 45578899999888877654 3467899999999999 78888 9999999999999
Q ss_pred eccCCCcceEEEEEeccccccccceEEEEEcCCCC-EEEEE--eeCCeEEEEEcccCcccCcccccccccccccEEEEEe
Q 048511 154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR-SILAH--GYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISW 230 (351)
Q Consensus 154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~--~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~ 230 (351)
|....+...... .....+...|.+++|+|.+. .++++ +.|+.|++||+.++ .+...+.. ...+.++.|
T Consensus 258 ~~~~~~~~~~~~---~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-----~~~~~~~~-~~~v~~~~~ 328 (420)
T 4gga_A 258 PSAPGEGGWVPL---QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-----ACLSAVDA-HSQVCSILW 328 (420)
T ss_dssp ESSCCSSCSCCS---EEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-----EEEEEEEC-SSCEEEEEE
T ss_pred eeccccccceee---eeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-----ccceeecc-ccceeeeee
Confidence 998733221111 11236788899999999765 45543 47899999999987 44555554 457889999
Q ss_pred ecCCCEEEEEe--CCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 231 SRSSDYLLSVS--HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 231 sp~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
+|+++.+++++ .|+.|+|||+.+++ .+..+.+|...|++++|+| ++.+|++|+.|++|+|||+.
T Consensus 329 ~~~~~~lv~~sg~~d~~I~iwd~~~~~----------~v~~l~gH~~~V~~l~~sp--dg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 329 SPHYKELISGHGFAQNQLVIWKYPTMA----------KVAELKGHTSRVLSLTMSP--DGATVASAAADETLRLWRCF 394 (420)
T ss_dssp ETTTTEEEEEECTTTCCEEEEETTTCC----------EEEEECCCSSCEEEEEECT--TSSCEEEEETTTEEEEECCS
T ss_pred cCCCCeEEEEEecCCCEEEEEECCCCc----------EEEEEcCCCCCEEEEEEcC--CCCEEEEEecCCeEEEEECC
Confidence 99999988765 79999999998877 6777789999999999999 99999999999999999975
No 39
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.3e-36 Score=262.07 Aligned_cols=246 Identities=16% Similarity=0.156 Sum_probs=197.1
Q ss_pred eeecCCceeEEEeeCCcccCCCCCccEEEEeeC------CCcEEEEecCCCcccce---eecccccceeeeEeeecCCeE
Q 048511 25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ------DKVIRIWKLALRGSSAN---TQSTYRKEVISLASYIEGPVL 95 (351)
Q Consensus 25 ~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~------dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l 95 (351)
..+|...|++|+|+ |+|++||+++. |+.|++|+..++..... ....+...+.+++|+|++.++
T Consensus 38 p~~H~~~V~~v~fS--------pDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l 109 (357)
T 4g56_B 38 PACMEVQIGAVRYR--------RDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL 109 (357)
T ss_dssp --CCCSEEEEEEEC--------SSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE
T ss_pred cccccCCEEEEEEC--------CCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE
Confidence 35799999999999 89999999997 77899999877654322 223345678999999998766
Q ss_pred EecCCceeEEEEEe------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceE
Q 048511 96 VAGSSSYQVSVESL------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWM 163 (351)
Q Consensus 96 ~~~~~~~~~~~~~~------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 163 (351)
++ +.++.+++|.. ..+|...|++++|+ +++++ |++|+.|+.|++||+++ +..+
T Consensus 110 ~~-s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~s------pdg~~------l~sgs~dg~v~iwd~~~--~~~~ 174 (357)
T 4g56_B 110 VA-SDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVF------SDGTQ------AVSGGKDFSVKVWDLSQ--KAVL 174 (357)
T ss_dssp EE-ETTSCEEEC--------CCCCEEECCCSSCEEEEEEC------SSSSE------EEEEETTSCEEEEETTT--TEEE
T ss_pred EE-ECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEEC------CCCCE------EEEEeCCCeEEEEECCC--CcEE
Confidence 54 55677776642 33789999999999 78899 99999999999999998 7777
Q ss_pred EEEEeccccccccceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC-CCEEEEEe
Q 048511 164 NVVTVGELSHSALGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS-SDYLLSVS 241 (351)
Q Consensus 164 ~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~-~~~l~s~~ 241 (351)
..+. .|...|.+++|+|++. ++++++.|+.|++||+++++. .....+..|...+.+++|+|+ +.+|++|+
T Consensus 175 ~~~~-----~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~---~~~~~~~~~~~~v~~v~~sp~~~~~la~g~ 246 (357)
T 4g56_B 175 KSYN-----AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP---ATRIDFCASDTIPTSVTWHPEKDDTFACGD 246 (357)
T ss_dssp EEEC-----CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC---BCBCCCTTCCSCEEEEEECTTSTTEEEEEE
T ss_pred EEEc-----CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce---eeeeeeccccccccchhhhhcccceEEEee
Confidence 6665 7889999999999875 789999999999999988742 222334457778999999997 46789999
Q ss_pred CCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCC-cEEEEecCCCeEEEEecC-chhhhce
Q 048511 242 HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGN-HRFVSGADEKVARVFEAP-LSFLKTL 313 (351)
Q Consensus 242 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~s~~~dg~v~vw~~~-~~~~~~~ 313 (351)
.|+.|++||+++++ .+..+.+|...|++++|+| ++ .+|++|+.|+.|+|||++ ++.++.+
T Consensus 247 ~d~~i~~wd~~~~~----------~~~~~~~~~~~v~~l~~sp--~~~~~lasgs~D~~i~iwd~~~~~~~~~~ 308 (357)
T 4g56_B 247 ETGNVSLVNIKNPD----------SAQTSAVHSQNITGLAYSY--HSSPFLASISEDCTVAVLDADFSEVFRDL 308 (357)
T ss_dssp SSSCEEEEESSCGG----------GCEEECCCSSCEEEEEECS--SSSCCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred cccceeEEECCCCc----------EeEEEeccceeEEEEEEcC--CCCCEEEEEeCCCEEEEEECCCCcEeEEC
Confidence 99999999998877 4455668889999999999 55 689999999999999987 5555443
No 40
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-36 Score=267.95 Aligned_cols=264 Identities=14% Similarity=0.192 Sum_probs=218.1
Q ss_pred CCCceEEEEEccCCCceE-EEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCC---cccceeecc
Q 048511 3 GLDNKIHLYRGQRTGKFV-RACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALR---GSSANTQST 78 (351)
Q Consensus 3 ~~dg~i~vw~~~~~~~~~-~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~---~~~~~~~~~ 78 (351)
+.|+.|+|||+.+ ++.. .+..+ .|...|++++|+ +++++|++++.||.|++||+... .........
T Consensus 42 ~~d~~v~iw~~~~-~~~~~~~~~~-~~~~~v~~~~~s--------~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~ 111 (416)
T 2pm9_A 42 STDSSLELWSLLA-ADSEKPIASL-QVDSKFNDLDWS--------HNNKIIAGALDNGSLELYSTNEANNAINSMARFSN 111 (416)
T ss_dssp CCCCCCEEEESSS-GGGCSCSCCC-CCSSCEEEEEEC--------SSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCC
T ss_pred CCCCeEEEEEccC-CCCCcEEEEE-ecCCceEEEEEC--------CCCCeEEEEccCCeEEEeecccccccccchhhccC
Confidence 7899999999987 4322 22333 589999999999 88999999999999999999872 223333345
Q ss_pred cccceeeeEeeec-CCeEEecCCceeEEEEEe-----------------ccccccceEEEEecCCCCCCCC-CcccCCCc
Q 048511 79 YRKEVISLASYIE-GPVLVAGSSSYQVSVESL-----------------LIGHEDWVYSVQWEPPSTAPSD-GVSCQQPS 139 (351)
Q Consensus 79 ~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~-----------------~~~h~~~v~~l~~~p~~~~~~~-~~~~~~~~ 139 (351)
+...+.++.|+|+ +.++++++.++.+.++.. +.+|...|.+++|+ ++ +.+
T Consensus 112 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~----- 180 (416)
T 2pm9_A 112 HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWN------QSLAHV----- 180 (416)
T ss_dssp SSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEEC------SSCTTE-----
T ss_pred CccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeC------CCCCcE-----
Confidence 5678899999998 899999998888876643 23578899999999 55 677
Q ss_pred eeEEeecCCeEEEEeccCCCcceEEEEEecc-ccccccceEEEEEcCCC-CEEEEEeeCC---eEEEEEcccCcccCccc
Q 048511 140 SILSASMDKTMMIWQPEKTTGIWMNVVTVGE-LSHSALGFYGGHWSPDG-RSILAHGYGG---AFHLWRNVGVDIDNWQP 214 (351)
Q Consensus 140 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~-~~l~~~~~dg---~i~~~d~~~~~~~~~~~ 214 (351)
|++++.|+.|++||++. +..+..+.... ...|...|.+++|+|++ .++++++.|+ .|++||+++.. .+
T Consensus 181 -l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~----~~ 253 (416)
T 2pm9_A 181 -FASAGSSNFASIWDLKA--KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN----TP 253 (416)
T ss_dssp -EEEESSSSCEEEEETTT--TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT----SC
T ss_pred -EEEEcCCCCEEEEECCC--CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC----CC
Confidence 99999999999999998 66666554210 11226789999999997 6899999998 99999998863 45
Q ss_pred ccccc-cccccEEEEEeec-CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCC-cEE
Q 048511 215 QKVPS-GHFAAVMDISWSR-SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGN-HRF 291 (351)
Q Consensus 215 ~~~~~-~~~~~v~~v~~sp-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l 291 (351)
+..+. +|...|.+++|+| ++++|++++.|+.|++||+++++ .+..+..|...|++++|+| ++ .+|
T Consensus 254 ~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~----------~~~~~~~~~~~v~~~~~s~--~~~~~l 321 (416)
T 2pm9_A 254 LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE----------QLSQFPARGNWCFKTKFAP--EAPDLF 321 (416)
T ss_dssp SBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC----------EEEEEECSSSCCCCEEECT--TCTTEE
T ss_pred cEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc----------cceeecCCCCceEEEEECC--CCCCEE
Confidence 67777 8999999999999 89999999999999999998876 5666678889999999999 77 899
Q ss_pred EEecCCCeEEEEecC
Q 048511 292 VSGADEKVARVFEAP 306 (351)
Q Consensus 292 ~s~~~dg~v~vw~~~ 306 (351)
++++.|+.|++|++.
T Consensus 322 ~s~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 322 ACASFDNKIEVQTLQ 336 (416)
T ss_dssp EECCSSSEEEEEESC
T ss_pred EEEecCCcEEEEEcc
Confidence 999999999999987
No 41
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=6.6e-36 Score=254.95 Aligned_cols=259 Identities=17% Similarity=0.269 Sum_probs=207.9
Q ss_pred CCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccc
Q 048511 3 GLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKE 82 (351)
Q Consensus 3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 82 (351)
+.|++|+|||+++ ++......+.+|...|++++|+ +++++|++|+.||+|++||+.+++.+..... + .
T Consensus 42 g~D~tV~iWd~~t-g~~~~~~~~~~~~~~V~~v~~~--------~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~-h--~ 109 (318)
T 4ggc_A 42 ALDNSVYLWSASS-GDILQLLQMEQPGEYISSVAWI--------KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS-H--S 109 (318)
T ss_dssp EETTEEEEEETTT-CCEEEEEECCSTTCCEEEEEEC--------TTSSEEEEEETTSEEEEEETTTTEEEEEEEC-C--S
T ss_pred EeCCEEEEEECCC-CCEEEEEEecCCCCeEEEEEEC--------CCCCEEEEEECCCcEEEeecCCceeEEEecC-c--c
Confidence 4589999999999 8766666677899999999999 8899999999999999999998877655442 2 2
Q ss_pred eeeeEeeecCCeEEecCCceeEEE---------EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511 83 VISLASYIEGPVLVAGSSSYQVSV---------ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW 153 (351)
Q Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~---------~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 153 (351)
.....++.++..++++..++.+.. ...+.+|...+.++.+. +++++ |++++.|+.|++|
T Consensus 110 ~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~------l~s~~~d~~i~iw 177 (318)
T 4ggc_A 110 ARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA------PDGRH------LASGGNDNLVNVW 177 (318)
T ss_dssp SCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC------TTSSE------EEEEETTSCEEEE
T ss_pred ceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc------CCCCE------EEEEecCcceeEE
Confidence 334456677888888887776644 34567899999999999 78888 9999999999999
Q ss_pred eccCCCcceEEEEEeccccccccceEEEEEcCCCCEE---EEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEe
Q 048511 154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSI---LAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISW 230 (351)
Q Consensus 154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l---~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~ 230 (351)
|+++.+........ ...+...|.+++++|++..+ ++++.++.|++||.+... ......+...+..+.|
T Consensus 178 d~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~------~~~~~~~~~~v~~~~~ 248 (318)
T 4ggc_A 178 PSAPGEGGWVPLQT---FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA------CLSAVDAHSQVCSILW 248 (318)
T ss_dssp ESSCBTTBSCCSEE---ECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC------EEEEEECSSCEEEEEE
T ss_pred ECCCCcccccceee---ecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc------ccccccceeeeeeeee
Confidence 99873322111111 23567789999999976633 356678999999998753 2333446778999999
Q ss_pred ecCCCEEEEEe--CCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 231 SRSSDYLLSVS--HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 231 sp~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
+|++..+++++ .|+.|+|||+++++ .+..+.+|...|++++|+| ++.+|++|+.||+|+|||+.
T Consensus 249 ~~~~~~~~~~sg~~d~~i~iwd~~~~~----------~~~~l~gH~~~V~~l~~sp--dg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 249 SPHYKELISGHGFAQNQLVIWKYPTMA----------KVAELKGHTSRVLSLTMSP--DGATVASAAADETLRLWRCF 314 (318)
T ss_dssp ETTTTEEEEEECTTTCCEEEEETTTCC----------EEEEECCCSSCEEEEEECT--TSSCEEEEETTTEEEEECCS
T ss_pred cccccceEEEEEcCCCEEEEEECCCCc----------EEEEEcCCCCCEEEEEEcC--CCCEEEEEecCCeEEEEECC
Confidence 99999887654 79999999998887 6677789999999999999 99999999999999999974
No 42
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.1e-36 Score=262.60 Aligned_cols=279 Identities=13% Similarity=0.132 Sum_probs=206.2
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCc-c-cceeecc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRG-S-SANTQST 78 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~-~-~~~~~~~ 78 (351)
+|+.||.|+|||+.+ +.+..+..+.+|.+.|++++|+ +++++|++++.|++|++||+.++. . .......
T Consensus 28 ~~~~d~~i~iw~~~~-~~~~~~~~~~~h~~~v~~~~~s--------~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~ 98 (377)
T 3dwl_C 28 TTTATNQVELYEQDG-NGWKHARTFSDHDKIVTCVDWA--------PKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLR 98 (377)
T ss_dssp CCCSSSCBCEEEEET-TEEEECCCBCCCSSCEEEEEEC--------TTTCCEEEEETTSSEEEC------CCCCEEECCC
T ss_pred EecCCCEEEEEEccC-CceEEEEEEecCCceEEEEEEe--------CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecc
Confidence 578999999999998 7667788899999999999999 889999999999999999999876 1 1222334
Q ss_pred cccceeeeEeeecCCeEEecCCceeEEEE-----------Eeccc-cccceEEEEecCCCCCCCCCcccCCCceeEEeec
Q 048511 79 YRKEVISLASYIEGPVLVAGSSSYQVSVE-----------SLLIG-HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM 146 (351)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----------~~~~~-h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~ 146 (351)
+...+.++.|+|++..+++++.++.+.++ ..+.+ |...|.+++|+ +++++ |++++.
T Consensus 99 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~------~~~~~------l~~~~~ 166 (377)
T 3dwl_C 99 LNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWH------PNNVL------LAAGCA 166 (377)
T ss_dssp CSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEEC------TTSSE------EEEEES
T ss_pred cCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEc------CCCCE------EEEEeC
Confidence 56788999999999999999988877653 34555 99999999999 78888 999999
Q ss_pred CCeEEEEeccCCCcc------------eEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccc
Q 048511 147 DKTMMIWQPEKTTGI------------WMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQP 214 (351)
Q Consensus 147 d~~i~iwd~~~~~~~------------~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 214 (351)
|+.|++||++..+.. .... ..... .|...|.+++|+|++++|++++.|+.|++||+++++.. ...
T Consensus 167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~-~~~ 243 (377)
T 3dwl_C 167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNT-VCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQP-PRA 243 (377)
T ss_dssp SSCEEEEEECCSSCC-CCCSCSSCSCCCEEE-EEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSC-EEE
T ss_pred CCEEEEEEEEecccCCCccccccccccchhh-hhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCc-cee
Confidence 999999999642100 0111 11222 78889999999999999999999999999999887310 011
Q ss_pred ccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccccc------C---c-----------------------c
Q 048511 215 QKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM------G---E-----------------------N 262 (351)
Q Consensus 215 ~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~------~---~-----------------------~ 262 (351)
+..+.+|...|.+++|+|++++|++++.++.+ +|+......... . . .
T Consensus 244 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (377)
T 3dwl_C 244 LITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRS 322 (377)
T ss_dssp CCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-----------
T ss_pred eEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccc
Confidence 67888999999999999999999998766655 676652210000 0 0 0
Q ss_pred ceE----------EeccccccccceeEEEEeeeCCCc---EEEEecCCCeEEEEec
Q 048511 263 SWH----------EVARPQVHGHDINCVTIIQGKGNH---RFVSGADEKVARVFEA 305 (351)
Q Consensus 263 ~~~----------~~~~~~~~~~~i~~~~~~~~~~~~---~l~s~~~dg~v~vw~~ 305 (351)
.+. .......|...|+++++.+. ++. .|++|+.||.|+|||+
T Consensus 323 ~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~-~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 323 TFRNMDLKGSSQSISSLPTVHQNMIATLRPYAG-TPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp --------------CCCSSSCSSCEEEEEEEEE-ETTEEEEEEEEETTSEEEEECC
T ss_pred cccchhhccccccccccCccccceeEEEeccCC-CCCceEEEEeecCCCcEEEecC
Confidence 000 00112248889999998771 223 6999999999999985
No 43
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1e-35 Score=260.81 Aligned_cols=259 Identities=11% Similarity=0.086 Sum_probs=206.0
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCC-CccEEEEeeCCCcEEEEecCCCcccceeecc-
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEA-ISILLVSSSQDKVIRIWKLALRGSSANTQST- 78 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~- 78 (351)
+|+.||.|+|||+.+ ++......+.+|.+.|.+++|+ + ++.+|++++.|+.|++||+... ........
T Consensus 91 s~~~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~~--------~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~ 160 (383)
T 3ei3_B 91 VGSKGGDIILWDYDV-QNKTSFIQGMGPGDAITGMKFN--------QFNTNQLFVSSIRGATTLRDFSGS-VIQVFAKTD 160 (383)
T ss_dssp EEEBTSCEEEEETTS-TTCEEEECCCSTTCBEEEEEEE--------TTEEEEEEEEETTTEEEEEETTSC-EEEEEECCC
T ss_pred EEcCCCeEEEEeCCC-cccceeeecCCcCCceeEEEeC--------CCCCCEEEEEeCCCEEEEEECCCC-ceEEEeccC
Confidence 477899999999998 6656555666899999999999 6 6899999999999999999853 33323222
Q ss_pred -cccceeeeEeeecCCeEEecCCceeEEEEE-------eccccccceEEEEecCCCCCCCCCc-ccCCCceeEEeecCCe
Q 048511 79 -YRKEVISLASYIEGPVLVAGSSSYQVSVES-------LLIGHEDWVYSVQWEPPSTAPSDGV-SCQQPSSILSASMDKT 149 (351)
Q Consensus 79 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~h~~~v~~l~~~p~~~~~~~~~-~~~~~~~l~s~~~d~~ 149 (351)
....+.+++|++++..+++++.++.+.++. .+.+|...|.+++|+ +++. + |++++.|+.
T Consensus 161 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~------~~~~~~------l~s~~~d~~ 228 (383)
T 3ei3_B 161 SWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFN------PRCDWL------MATSSVDAT 228 (383)
T ss_dssp CSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEEC------SSCTTE------EEEEETTSE
T ss_pred CCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEEC------CCCCCE------EEEEeCCCE
Confidence 235688999999999999999999887664 466799999999999 6776 7 999999999
Q ss_pred EEEEeccCCC--cceEEEEEeccccccccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCcccCcccccccccc-----
Q 048511 150 MMIWQPEKTT--GIWMNVVTVGELSHSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH----- 221 (351)
Q Consensus 150 i~iwd~~~~~--~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~----- 221 (351)
|++||++..+ +..+..+ .|...|.+++|+| ++++|++++.|+.|++||+++.+ ....+.+|
T Consensus 229 i~iwd~~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~ 297 (383)
T 3ei3_B 229 VKLWDLRNIKDKNSYIAEM------PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS-----KPDQIIIHPHRQF 297 (383)
T ss_dssp EEEEEGGGCCSTTCEEEEE------ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTT-----SCSEEEECCBCCC
T ss_pred EEEEeCCCCCcccceEEEe------cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc-----ccccccccccccc
Confidence 9999999732 2233322 4778999999999 99999999999999999998763 23333322
Q ss_pred --c----------ccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccc--cccceeEEEEeeeCC
Q 048511 222 --F----------AAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQV--HGHDINCVTIIQGKG 287 (351)
Q Consensus 222 --~----------~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~ 287 (351)
. ..+..++|+|++++ +++.|+.|++||+.+++ .+..+.. |...+.+++|+| +
T Consensus 298 ~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~----------~~~~l~~~~~~~~~~~~~~s~--~ 363 (383)
T 3ei3_B 298 QHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGG----------LVHQLRDPNAAGIISLNKFSP--T 363 (383)
T ss_dssp TTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCC----------EEEEECBTTBCSCCCEEEECT--T
T ss_pred ccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCc----------eeeeecCCCCCceEEEEEEec--C
Confidence 1 34455777777776 77899999999998887 3444444 456688889999 9
Q ss_pred CcEEEEecCCCeEEEEecCc
Q 048511 288 NHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 288 ~~~l~s~~~dg~v~vw~~~~ 307 (351)
+.+|++|+ |+.|++||++.
T Consensus 364 g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 364 GDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp SSEEEEEE-TTEEEEEECC-
T ss_pred ccEEEEec-CCcEEEEecCC
Confidence 99999997 99999999863
No 44
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-35 Score=261.31 Aligned_cols=275 Identities=19% Similarity=0.220 Sum_probs=211.8
Q ss_pred EEEEEccCCCce-EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccc-------
Q 048511 8 IHLYRGQRTGKF-VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTY------- 79 (351)
Q Consensus 8 i~vw~~~~~~~~-~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~------- 79 (351)
..+|+....... ..+....+|.+.|++++|+ +++++||+++ |+++++|++.++..........
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fs--------pdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~ 112 (393)
T 1erj_A 42 YILYNPALPREIDVELHKSLDHTSVVCCVKFS--------NDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPE 112 (393)
T ss_dssp EEEECTTSCCCEEEEEEEEEECSSCCCEEEEC--------TTSSEEEEEC-BSCEEEEETTTCCEEEEECC---------
T ss_pred EEEECCCCCcccCceeEEecCCCCEEEEEEEC--------CCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccc
Confidence 447766552211 1122233699999999999 8899999977 7899999998877654432211
Q ss_pred ----------ccceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCcee
Q 048511 80 ----------RKEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSI 141 (351)
Q Consensus 80 ----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l 141 (351)
...+.+++|+|+++.+++++.++.+++|. .+.+|...|.+++|+ +++.+ |
T Consensus 113 ~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~------p~~~~------l 180 (393)
T 1erj_A 113 NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF------PSGDK------L 180 (393)
T ss_dssp --------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC------TTSSE------E
T ss_pred cccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEc------CCCCE------E
Confidence 11377999999999999999999887764 467899999999999 78888 9
Q ss_pred EEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCcccCccccccc--
Q 048511 142 LSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP-- 218 (351)
Q Consensus 142 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-- 218 (351)
++++.|++|++||+++ +.....+. +...+.+++|+| ++++|++++.|+.|++||++++. .+..+
T Consensus 181 ~s~s~d~~v~iwd~~~--~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~-----~~~~~~~ 247 (393)
T 1erj_A 181 VSGSGDRTVRIWDLRT--GQCSLTLS------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF-----LVERLDS 247 (393)
T ss_dssp EEEETTSEEEEEETTT--TEEEEEEE------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC-----EEEEEC-
T ss_pred EEecCCCcEEEEECCC--CeeEEEEE------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc-----EEEeecc
Confidence 9999999999999998 66655543 445799999999 89999999999999999998763 23332
Q ss_pred -----ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccccc--CccceEEeccccccccceeEEEEeeeCCCcEE
Q 048511 219 -----SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM--GENSWHEVARPQVHGHDINCVTIIQGKGNHRF 291 (351)
Q Consensus 219 -----~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 291 (351)
.+|...|.+++|+|++++|++++.|+.|++||++....... ..........+.+|...|.+++|++ ++.+|
T Consensus 248 ~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l 325 (393)
T 1erj_A 248 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ--NDEYI 325 (393)
T ss_dssp -----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG--GGCEE
T ss_pred cccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECC--CCCEE
Confidence 57899999999999999999999999999999976532110 0001112334567888899999999 89999
Q ss_pred EEecCCCeEEEEecC-chhhhceeeccc
Q 048511 292 VSGADEKVARVFEAP-LSFLKTLNHATF 318 (351)
Q Consensus 292 ~s~~~dg~v~vw~~~-~~~~~~~~~~~~ 318 (351)
++|+.|+.|++||+. ++.+..+.+|..
T Consensus 326 ~sgs~D~~v~iwd~~~~~~~~~l~~h~~ 353 (393)
T 1erj_A 326 LSGSKDRGVLFWDKKSGNPLLMLQGHRN 353 (393)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred EEEeCCCeEEEEECCCCeEEEEECCCCC
Confidence 999999999999987 777777777653
No 45
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2e-35 Score=253.77 Aligned_cols=256 Identities=16% Similarity=0.248 Sum_probs=213.2
Q ss_pred CCCCceEEEEEccCCCceEEEEeee--ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc-eeecc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELK--GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA-NTQST 78 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~-~~~~~ 78 (351)
|+ ||.|++||+...+....+..+. +|...|.+++|+ +++++|++++.|+.|++||+.+++... .....
T Consensus 69 ~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 139 (337)
T 1gxr_A 69 GG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL--------PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS 139 (337)
T ss_dssp EC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEEC--------TTSSEEEEEESSSEEEEEECCCC--EEEEEEEC
T ss_pred cC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEc--------CCCCEEEEEcCCCcEEEEECCCCCcceeeeccc
Confidence 45 9999999998732222333333 799999999999 889999999999999999998876322 22334
Q ss_pred cccceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeE
Q 048511 79 YRKEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTM 150 (351)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i 150 (351)
+...+.++.++++++.+++++.++.+.++. .+.+|...|.+++|+ +++++ |++++.|+.|
T Consensus 140 ~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~------~~~~~------l~~~~~dg~i 207 (337)
T 1gxr_A 140 SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS------NDGTK------LWTGGLDNTV 207 (337)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC------TTSSE------EEEEETTSEE
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEEC------CCCCE------EEEEecCCcE
Confidence 456788999999999999999888886654 466799999999999 78888 9999999999
Q ss_pred EEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEe
Q 048511 151 MIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISW 230 (351)
Q Consensus 151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~ 230 (351)
++||++. +..+..+. +...+.+++|+|+++++++++.++.|++||+++.+ ...+..|...|.+++|
T Consensus 208 ~~~d~~~--~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~------~~~~~~~~~~v~~~~~ 273 (337)
T 1gxr_A 208 RSWDLRE--GRQLQQHD------FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD------KYQLHLHESCVLSLKF 273 (337)
T ss_dssp EEEETTT--TEEEEEEE------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC------EEEECCCSSCEEEEEE
T ss_pred EEEECCC--CceEeeec------CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC------eEEEcCCccceeEEEE
Confidence 9999998 66555543 56679999999999999999999999999998863 3456789999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511 231 SRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA 305 (351)
Q Consensus 231 sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~ 305 (351)
+|++++|++++.||.|++||+.+++ .+.. ..|...+++++|+| ++.+|++++.||.|++|++
T Consensus 274 ~~~~~~l~~~~~dg~i~~~~~~~~~----------~~~~-~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 274 AYCGKWFVSTGKDNLLNAWRTPYGA----------SIFQ-SKESSSVLSCDISV--DDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCC----------EEEE-EECSSCEEEEEECT--TSCEEEEEETTSCEEEEEE
T ss_pred CCCCCEEEEecCCCcEEEEECCCCe----------EEEE-ecCCCcEEEEEECC--CCCEEEEecCCCeEEEEEE
Confidence 9999999999999999999998876 2221 24677899999999 8999999999999999995
No 46
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7.4e-36 Score=255.07 Aligned_cols=223 Identities=22% Similarity=0.245 Sum_probs=190.8
Q ss_pred ceEEEEeeeecCCceeEEEeeCCcccCCCCC-ccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEE
Q 048511 18 KFVRACELKGHTDWIRSLDFSLPVCTSGEAI-SILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLV 96 (351)
Q Consensus 18 ~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 96 (351)
.+....++.+|.+.|++++|+ ++ +++|+||+.|++|++|++.......
T Consensus 6 ~~~l~~~l~gH~~~V~~l~~~--------~~~~~~l~s~s~D~~v~~W~~~~~~~~~----------------------- 54 (319)
T 3frx_A 6 VLVLRGTLEGHNGWVTSLATS--------AGQPNLLLSASRDKTLISWKLTGDDQKF----------------------- 54 (319)
T ss_dssp EEEEEEEECCCSSCEEEEEEC--------SSCTTEEEEEETTSEEEEEEEEEETTEE-----------------------
T ss_pred EEEEEEEEccccceEEEEEcc--------CCCccEEEEecCCccEEEecCCCCCccc-----------------------
Confidence 456677899999999999999 54 4899999999999999986432211
Q ss_pred ecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccccccc
Q 048511 97 AGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSAL 176 (351)
Q Consensus 97 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 176 (351)
......+.+|...|.+++|+ +++++ |++|+.|++|++||+++ ++.+..+. +|..
T Consensus 55 -------~~~~~~~~~h~~~v~~~~~s------~dg~~------l~s~s~D~~v~~wd~~~--~~~~~~~~-----~h~~ 108 (319)
T 3frx_A 55 -------GVPVRSFKGHSHIVQDCTLT------ADGAY------ALSASWDKTLRLWDVAT--GETYQRFV-----GHKS 108 (319)
T ss_dssp -------EEEEEEEECCSSCEEEEEEC------TTSSE------EEEEETTSEEEEEETTT--TEEEEEEE-----CCSS
T ss_pred -------cccceEEeCCcccEEEEEEC------CCCCE------EEEEeCCCEEEEEECCC--CCeeEEEc-----cCCC
Confidence 01234578999999999999 78999 99999999999999998 77777666 8899
Q ss_pred ceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC------CCEEEEEeCCCcEEEEc
Q 048511 177 GFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS------SDYLLSVSHDQTTRVFA 250 (351)
Q Consensus 177 ~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~------~~~l~s~~~dg~i~vwd 250 (351)
.|.+++|+|++.+|++++.|+.|++||++. .++..+.+|...|.++.|+|. +.+|++++.|+.|++||
T Consensus 109 ~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd 182 (319)
T 3frx_A 109 DVMSVDIDKKASMIISGSRDKTIKVWTIKG------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182 (319)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETTS------CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEE
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCC------CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEE
Confidence 999999999999999999999999999976 456778899999999999985 44899999999999999
Q ss_pred CCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceee
Q 048511 251 PWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNH 315 (351)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~ 315 (351)
++... ....+.+|...|++++|+| ++.+|++|+.||.|++||+. ++.+..+..
T Consensus 183 ~~~~~----------~~~~~~~h~~~v~~~~~sp--~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 236 (319)
T 3frx_A 183 LNQFQ----------IEADFIGHNSNINTLTASP--DGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236 (319)
T ss_dssp TTTTE----------EEEEECCCCSCEEEEEECT--TSSEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred CCcch----------hheeecCCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence 98765 4555678999999999999 99999999999999999987 656665554
No 47
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=257.59 Aligned_cols=269 Identities=13% Similarity=0.122 Sum_probs=210.8
Q ss_pred CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCC---ccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511 5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAI---SILLVSSSQDKVIRIWKLALRGSSANTQSTYRK 81 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~---~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~ 81 (351)
||.|+|||+.+ ++...... .+|...|++++|+ ++ +.+|++++.||.|++||+.+++........+..
T Consensus 43 d~~v~iw~~~~-~~~~~~~~-~~~~~~v~~~~~~--------~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 112 (357)
T 3i2n_A 43 TGVIQLYEIQH-GDLKLLRE-IEKAKPIKCGTFG--------ATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKE 112 (357)
T ss_dssp CEEEEEEEECS-SSEEEEEE-EEESSCEEEEECT--------TCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSS
T ss_pred CcEEEEEeCCC-Ccccceee-ecccCcEEEEEEc--------CCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEeccc
Confidence 99999999998 65544333 3799999999999 55 699999999999999999988733334445566
Q ss_pred ceeee------EeeecCCeEEecCCceeEEEEEe---------ccccc----cceEEEEecCCCCCCCCCcccCCCceeE
Q 048511 82 EVISL------ASYIEGPVLVAGSSSYQVSVESL---------LIGHE----DWVYSVQWEPPSTAPSDGVSCQQPSSIL 142 (351)
Q Consensus 82 ~~~~~------~~~~~~~~l~~~~~~~~~~~~~~---------~~~h~----~~v~~l~~~p~~~~~~~~~~~~~~~~l~ 142 (351)
.+.++ ++++++..+++++.++.+.++.. +..|. ..|.++.|.+.-. +++++ |+
T Consensus 113 ~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~------l~ 184 (357)
T 3i2n_A 113 IINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYN--QEERV------VC 184 (357)
T ss_dssp CEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC---CCCE------EE
T ss_pred ceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccC--CCCCE------EE
Confidence 77777 45789999999999988877653 22223 3788888432111 68888 99
Q ss_pred EeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC---CCCEEEEEeeCCeEEEEEcccCcccCcccccccc
Q 048511 143 SASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP---DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS 219 (351)
Q Consensus 143 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~---~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 219 (351)
+++.|+.|++||++. +...... .+...|.+++|+| ++.++++++.||.|++||+++.+ +...+.
T Consensus 185 ~~~~d~~i~i~d~~~--~~~~~~~------~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~ 251 (357)
T 3i2n_A 185 AGYDNGDIKLFDLRN--MALRWET------NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH-----PTKGFA 251 (357)
T ss_dssp EEETTSEEEEEETTT--TEEEEEE------ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE-----TTTEEE
T ss_pred EEccCCeEEEEECcc--Cceeeec------CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC-----ccccee
Confidence 999999999999998 5543332 5677899999999 89999999999999999998863 344433
Q ss_pred -----cccccEEEEEeecCCC-EEEEEeCCCcEEEEcCCCcccccc---------CccceEEeccccccccceeEEEEee
Q 048511 220 -----GHFAAVMDISWSRSSD-YLLSVSHDQTTRVFAPWKNVASLM---------GENSWHEVARPQVHGHDINCVTIIQ 284 (351)
Q Consensus 220 -----~~~~~v~~v~~sp~~~-~l~s~~~dg~i~vwd~~~~~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~~~ 284 (351)
+|...|++++|+|+++ +|++++.||.|++||++....... ....+..+..+..|...|++++|+|
T Consensus 252 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 331 (357)
T 3i2n_A 252 SVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSP 331 (357)
T ss_dssp EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECS
T ss_pred eeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcC
Confidence 8999999999999998 899999999999999986542110 0012345666778999999999999
Q ss_pred eCCCcEEE-EecCCCeEEEEecC
Q 048511 285 GKGNHRFV-SGADEKVARVFEAP 306 (351)
Q Consensus 285 ~~~~~~l~-s~~~dg~v~vw~~~ 306 (351)
++.+|+ +++.|+.|++|++.
T Consensus 332 --~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 332 --DKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp --SSTTEEEEEETTSEEEEEEEC
T ss_pred --CCCeEEEEecCCCcEEEEECC
Confidence 888887 89999999999976
No 48
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-35 Score=250.36 Aligned_cols=255 Identities=17% Similarity=0.170 Sum_probs=213.3
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccc--ceeecc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSS--ANTQST 78 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~--~~~~~~ 78 (351)
+|+.||.|++||+.+ + .....+..|...|.+++|+ +++++|++++.|+.|++|++...... ......
T Consensus 34 s~~~dg~v~vw~~~~-~--~~~~~~~~~~~~v~~~~~~--------~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~ 102 (313)
T 3odt_A 34 SVSRDGTVRLWSKDD-Q--WLGTVVYTGQGFLNSVCYD--------SEKELLLFGGKDTMINGVPLFATSGEDPLYTLIG 102 (313)
T ss_dssp EEETTSEEEEEEESS-S--EEEEEEEECSSCEEEEEEE--------TTTTEEEEEETTSCEEEEETTCCTTSCC-CEECC
T ss_pred EEEcCCcEEEEECCC-C--EEEEEeecCCccEEEEEEC--------CCCCEEEEecCCCeEEEEEeeecCCCCcccchhh
Confidence 478899999999987 6 4566788999999999999 88999999999999999999765422 222334
Q ss_pred cccceeeeEeeecCCeEEecCCceeEEEEE------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511 79 YRKEVISLASYIEGPVLVAGSSSYQVSVES------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI 152 (351)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i 152 (351)
+...+.++.+ ++..+++++.++.+.++. .+..|...+.++.|.| ++++. +++++.|+.|++
T Consensus 103 ~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~-----~~~~~------l~~~~~d~~i~i 169 (313)
T 3odt_A 103 HQGNVCSLSF--QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVS-----FSENK------FLTASADKTIKL 169 (313)
T ss_dssp CSSCEEEEEE--ETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEE-----TTTTE------EEEEETTSCEEE
T ss_pred cccCEEEEEe--cCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEcc-----CCCCE------EEEEECCCCEEE
Confidence 5567777777 678999999998887664 4567899999999995 47888 999999999999
Q ss_pred EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511 153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR 232 (351)
Q Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 232 (351)
||.. .....+. ..+...+.+++|+|++. +++++.|+.|++||++++ +++..+.+|...|++++|+|
T Consensus 170 ~d~~----~~~~~~~----~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~i~~~~~~~ 235 (313)
T 3odt_A 170 WQND----KVIKTFS----GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG-----DVLRTYEGHESFVYCIKLLP 235 (313)
T ss_dssp EETT----EEEEEEC----SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC-----CEEEEEECCSSCEEEEEECT
T ss_pred EecC----ceEEEEe----ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch-----hhhhhhhcCCceEEEEEEec
Confidence 9943 3333333 23778899999999998 999999999999999886 56778889999999999999
Q ss_pred CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511 233 SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 233 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 307 (351)
++ .|++++.||.|++||+++++ .+..+..|...|++++|+| ++. +++++.||.|++|+++.
T Consensus 236 ~~-~l~~~~~dg~v~iwd~~~~~----------~~~~~~~~~~~i~~~~~~~--~~~-~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 236 NG-DIVSCGEDRTVRIWSKENGS----------LKQVITLPAISIWSVDCMS--NGD-IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp TS-CEEEEETTSEEEEECTTTCC----------EEEEEECSSSCEEEEEECT--TSC-EEEEETTSCEEEEESCG
T ss_pred CC-CEEEEecCCEEEEEECCCCc----------eeEEEeccCceEEEEEEcc--CCC-EEEEeCCCcEEEEeCCC
Confidence 99 58899999999999998887 5555667888899999999 777 66799999999999883
No 49
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-35 Score=261.57 Aligned_cols=265 Identities=16% Similarity=0.238 Sum_probs=212.3
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+++.||.|++||+.+ ++....... .|...|++++|+ +++++|++++.||.|++||+.+++...... .+.
T Consensus 108 ~~~~d~~v~lw~~~~-~~~~~~~~~-~~~~~v~~v~~s--------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~ 176 (401)
T 4aez_A 108 AVALERNVYVWNADS-GSVSALAET-DESTYVASVKWS--------HDGSFLSVGLGNGLVDIYDVESQTKLRTMA-GHQ 176 (401)
T ss_dssp EEEETTEEEEEETTT-CCEEEEEEC-CTTCCEEEEEEC--------TTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCS
T ss_pred EEECCCeEEEeeCCC-CcEeEeeec-CCCCCEEEEEEC--------CCCCEEEEECCCCeEEEEECcCCeEEEEec-CCC
Confidence 367899999999998 754333222 389999999999 889999999999999999999877655443 456
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEE---------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEE
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVES---------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMM 151 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~ 151 (351)
..+.++.| ++..+++++.++.+.++. .+.+|...|.+++|+ +++.+ |++++.|+.|+
T Consensus 177 ~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~------l~s~~~d~~v~ 242 (401)
T 4aez_A 177 ARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR------SDGLQ------LASGGNDNVVQ 242 (401)
T ss_dssp SCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC------TTSSE------EEEEETTSCEE
T ss_pred CceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEc------CCCCE------EEEEeCCCeEE
Confidence 67778888 678999999888887665 356799999999999 78888 99999999999
Q ss_pred EEeccCCCcceEEEEEeccccccccceEEEEEcCCCC-EEEEEe--eCCeEEEEEcccCcccCcccccccccccccEEEE
Q 048511 152 IWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR-SILAHG--YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDI 228 (351)
Q Consensus 152 iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v 228 (351)
+||++. +.....+. .|...|.+++|+|++. ++++++ .|+.|++||++++ .++..+. +...|.++
T Consensus 243 iwd~~~--~~~~~~~~-----~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-----~~~~~~~-~~~~v~~~ 309 (401)
T 4aez_A 243 IWDARS--SIPKFTKT-----NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-----ARVNTVD-AGSQVTSL 309 (401)
T ss_dssp EEETTC--SSEEEEEC-----CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-----CEEEEEE-CSSCEEEE
T ss_pred EccCCC--CCccEEec-----CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-----CEEEEEe-CCCcEEEE
Confidence 999998 66665554 6788999999999775 555554 6999999999886 4455554 66789999
Q ss_pred EeecCCCEEEEE--eCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 229 SWSRSSDYLLSV--SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 229 ~~sp~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
+|+|++++|+++ +.||.|++||+.++.. .....+.+|...|.+++|+| ++.+|++++.||.|++|++.
T Consensus 310 ~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~--------~~~~~~~~h~~~v~~~~~s~--dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 310 IWSPHSKEIMSTHGFPDNNLSIWSYSSSGL--------TKQVDIPAHDTRVLYSALSP--DGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp EECSSSSEEEEEECTTTCEEEEEEEETTEE--------EEEEEEECCSSCCCEEEECT--TSSEEEEECTTSEEEEEECC
T ss_pred EECCCCCeEEEEeecCCCcEEEEecCCccc--------eeEEEecCCCCCEEEEEECC--CCCEEEEEeCCCcEEEEECC
Confidence 999999999984 4899999999977541 23334567888999999999 99999999999999999987
Q ss_pred -chhhhce
Q 048511 307 -LSFLKTL 313 (351)
Q Consensus 307 -~~~~~~~ 313 (351)
++.+...
T Consensus 380 ~~~~~~~~ 387 (401)
T 4aez_A 380 DGDHVKRP 387 (401)
T ss_dssp C-------
T ss_pred CCcccccc
Confidence 5555443
No 50
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.8e-35 Score=252.16 Aligned_cols=249 Identities=20% Similarity=0.257 Sum_probs=197.6
Q ss_pred eEEEEeeeecCCceeEEEeeCCcc-cCCCCCccEEEEeeCCCcEEEEecCCCcc------cceeecccccceeeeEeeec
Q 048511 19 FVRACELKGHTDWIRSLDFSLPVC-TSGEAISILLVSSSQDKVIRIWKLALRGS------SANTQSTYRKEVISLASYIE 91 (351)
Q Consensus 19 ~~~~~~~~~h~~~V~~l~~~~~~~-~~~~~~~~~l~t~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~ 91 (351)
+.....+.+|.+.|++++|.+... + +++++|+||+.|++|++||+..... .......+...+.+++|+++
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~---~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~ 87 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKEN---EDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE 87 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTT---CCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS
T ss_pred eeeeeeeccchhhhhheeeEEEeecC---CCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC
Confidence 356678999999999999921100 1 3789999999999999999976532 12233455678899999999
Q ss_pred CCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceE
Q 048511 92 GPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWM 163 (351)
Q Consensus 92 ~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 163 (351)
+.++++++.++.+++|. .+.+|...|.+++|+ +++++ |++++.|++|++||+.. ...
T Consensus 88 ~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~s------p~~~~------l~s~~~d~~i~~wd~~~--~~~- 152 (343)
T 2xzm_R 88 NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS------PDNRQ------ILSAGAEREIKLWNILG--ECK- 152 (343)
T ss_dssp TTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEEC------SSTTE------EEEEETTSCEEEEESSS--CEE-
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEEC------CCCCE------EEEEcCCCEEEEEeccC--Cce-
Confidence 99999999999988775 467899999999999 78888 99999999999999974 221
Q ss_pred EEEEeccccccccceEEEEEcCCC----------CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC
Q 048511 164 NVVTVGELSHSALGFYGGHWSPDG----------RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS 233 (351)
Q Consensus 164 ~~~~~~~~~~~~~~i~~i~~~~~~----------~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 233 (351)
........|...|.+++|+|++ .++++++.|+.|++||... .....+.+|...|.+++|+|+
T Consensus 153 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~------~~~~~~~~h~~~v~~~~~s~~ 224 (343)
T 2xzm_R 153 --FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF------QIRYTFKAHESNVNHLSISPN 224 (343)
T ss_dssp --EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT------EEEEEEECCSSCEEEEEECTT
T ss_pred --eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC------ceeEEEcCccccceEEEECCC
Confidence 1222234677889999999987 7899999999999999543 446678889999999999999
Q ss_pred CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 234 SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 234 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
+++|++++.|+.|++||+..... ....+ .+...|++++|+| ++.++++ +.|+.|++|++.
T Consensus 225 g~~l~sgs~dg~v~iwd~~~~~~---------~~~~~-~~~~~v~~v~~sp--~~~~la~-~~d~~v~iw~~~ 284 (343)
T 2xzm_R 225 GKYIATGGKDKKLLIWDILNLTY---------PQREF-DAGSTINQIAFNP--KLQWVAV-GTDQGVKIFNLM 284 (343)
T ss_dssp SSEEEEEETTCEEEEEESSCCSS---------CSEEE-ECSSCEEEEEECS--SSCEEEE-EESSCEEEEESS
T ss_pred CCEEEEEcCCCeEEEEECCCCcc---------cceee-cCCCcEEEEEECC--CCCEEEE-ECCCCEEEEEeC
Confidence 99999999999999999954431 11111 2445699999999 7877665 467789999986
No 51
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.1e-35 Score=258.29 Aligned_cols=276 Identities=14% Similarity=0.139 Sum_probs=213.5
Q ss_pred CCCCceEEEEEccCCCceEEEEeee--ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELK--GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTY 79 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~ 79 (351)
++.++.|++||+.+.+....+..+. .|...|++++|+ |+...++.+|++++.||.|++||+.+++...... .+
T Consensus 40 ~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~ 114 (366)
T 3k26_A 40 TVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWT----YDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV-GH 114 (366)
T ss_dssp EEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEE----ECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE-SC
T ss_pred ECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEec----cCCCCCCCEEEEecCCCEEEEEEchhceEeeeec-CC
Confidence 3457799999999723223333222 266889999999 2211227899999999999999999877655443 45
Q ss_pred ccceeeeEeee-cCCeEEecCCceeEEEEEe--------c---cccccceEEEEecCCCCCCCCCcccCCCceeEEeecC
Q 048511 80 RKEVISLASYI-EGPVLVAGSSSYQVSVESL--------L---IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD 147 (351)
Q Consensus 80 ~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~--------~---~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d 147 (351)
...+.++.|+| ++..+++++.++.+.++.. + .+|...|.+++|+ +++++ |++++.|
T Consensus 115 ~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~------l~~~~~d 182 (366)
T 3k26_A 115 GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD------LLGEK------IMSCGMD 182 (366)
T ss_dssp CSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC------TTSSE------EEEEETT
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC------CCCCE------EEEecCC
Confidence 67899999999 8999999999988877653 3 5799999999999 78888 9999999
Q ss_pred CeEEEEeccCCCcceEEEEE-----------------------eccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEc
Q 048511 148 KTMMIWQPEKTTGIWMNVVT-----------------------VGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRN 204 (351)
Q Consensus 148 ~~i~iwd~~~~~~~~~~~~~-----------------------~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~ 204 (351)
+.|++||++. +.....+. ......|...|.+++|+ ++++++++.|+.|++||+
T Consensus 183 g~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~ 258 (366)
T 3k26_A 183 HSLKLWRINS--KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKP 258 (366)
T ss_dssp SCEEEEESCS--HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEE
T ss_pred CCEEEEECCC--CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeC
Confidence 9999999987 33221111 01122378889999998 779999999999999999
Q ss_pred ccCccc---------CcccccccccccccEEEEEeecC--CCEEEEEeCCCcEEEEcCCCccccccCccceEEecccccc
Q 048511 205 VGVDID---------NWQPQKVPSGHFAAVMDISWSRS--SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVH 273 (351)
Q Consensus 205 ~~~~~~---------~~~~~~~~~~~~~~v~~v~~sp~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 273 (351)
++.... ....+..+..|...|++++|+|+ +++|++++.||.|++||+..++... .....+..|
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~------~~~~~~~~~ 332 (366)
T 3k26_A 259 GKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK------AKCTTLTHH 332 (366)
T ss_dssp SSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGG------CEEEEECCT
T ss_pred CCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcc------ccceEEccc
Confidence 775320 11235566778889999999999 9999999999999999998876211 122344455
Q ss_pred --ccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 274 --GHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 274 --~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
...|++++|+| ++.+|++++.||.|++||+.
T Consensus 333 ~~~~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 333 KCGAAIRQTSFSR--DSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TCCSCEEEEEECT--TSSEEEEEETTSEEEEEEC-
T ss_pred ccCCceEEEEeCC--CCCeEEEEeCCCEEEEEEec
Confidence 68899999999 99999999999999999974
No 52
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.3e-34 Score=260.16 Aligned_cols=257 Identities=19% Similarity=0.269 Sum_probs=214.9
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.||+|++||+.+ + ..+..+.+|.+.|++++|+ +++ +|++|+.||+|++||+.+++...... .+.
T Consensus 137 sgs~dg~i~vwd~~~-~--~~~~~~~~h~~~V~~l~~~--------~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~-~h~ 203 (464)
T 3v7d_B 137 TGADDKMIRVYDSIN-K--KFLLQLSGHDGGVWALKYA--------HGG-ILVSGSTDRTVRVWDIKKGCCTHVFE-GHN 203 (464)
T ss_dssp EEETTSCEEEEETTT-T--EEEEEECCCSSCEEEEEEC--------STT-EEEEEETTSCEEEEETTTTEEEEEEC-CCS
T ss_pred EEcCCCcEEEEECCC-C--cEEEEEeCCCcCEEEEEEc--------CCC-EEEEEeCCCCEEEEECCCCcEEEEEC-CCC
Confidence 478999999999998 6 5677889999999999999 666 99999999999999999887654433 456
Q ss_pred cceeeeEee--ecCCeEEecCCceeEEEEE-------------------------------eccccccceEEEEecCCCC
Q 048511 81 KEVISLASY--IEGPVLVAGSSSYQVSVES-------------------------------LLIGHEDWVYSVQWEPPST 127 (351)
Q Consensus 81 ~~~~~~~~~--~~~~~l~~~~~~~~~~~~~-------------------------------~~~~h~~~v~~l~~~p~~~ 127 (351)
..+.++.+. +++..+++++.++.+.++. .+.+|...|.++.
T Consensus 204 ~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------ 277 (464)
T 3v7d_B 204 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS------ 277 (464)
T ss_dssp SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE------
T ss_pred CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc------
Confidence 678888887 4778999999888887654 3456777777774
Q ss_pred CCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccC
Q 048511 128 APSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGV 207 (351)
Q Consensus 128 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~ 207 (351)
+++++ +++++.|+.|++||+++ +..+..+. .|...|.+++|+|+++++++++.|+.|++||++++
T Consensus 278 --~~~~~------l~~~~~d~~i~vwd~~~--~~~~~~~~-----~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 342 (464)
T 3v7d_B 278 --GHGNI------VVSGSYDNTLIVWDVAQ--MKCLYILS-----GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG 342 (464)
T ss_dssp --EETTE------EEEEETTSCEEEEETTT--TEEEEEEC-----CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred --CCCCE------EEEEeCCCeEEEEECCC--CcEEEEec-----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence 45677 99999999999999998 77766665 78889999999999999999999999999999887
Q ss_pred cccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCC
Q 048511 208 DIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKG 287 (351)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 287 (351)
+++..+.+|...|.+++|+ +.+|++++.||.|++||+.+... .... .+...+..++|++ +
T Consensus 343 -----~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~----------~~~~-~~~~~~~~~~~~~--~ 402 (464)
T 3v7d_B 343 -----ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR----------KFSY-HHTNLSAITTFYV--S 402 (464)
T ss_dssp -----EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE----------EEEE-ECTTCCCEEEEEE--C
T ss_pred -----cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCce----------eeee-cCCCCccEEEEEe--C
Confidence 5688889999999999997 57999999999999999987751 1111 3556688899999 8
Q ss_pred CcEEEEecCCCeEEEEecC-chhhhc
Q 048511 288 NHRFVSGADEKVARVFEAP-LSFLKT 312 (351)
Q Consensus 288 ~~~l~s~~~dg~v~vw~~~-~~~~~~ 312 (351)
+.+|++|+ ||.|++||+. ++.+..
T Consensus 403 ~~~l~~~~-dg~i~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 403 DNILVSGS-ENQFNIYNLRSGKLVHA 427 (464)
T ss_dssp SSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred CCEEEEec-CCeEEEEECCCCcEEeh
Confidence 99999998 8999999987 665543
No 53
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-35 Score=258.59 Aligned_cols=266 Identities=15% Similarity=0.129 Sum_probs=216.6
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.||.|++||.. + ..+..+.+|...|.+++|+ +++++|++++.|+.|++||+.+++.........
T Consensus 125 ~~~~dg~i~i~~~~--~--~~~~~~~~~~~~v~~~~~~--------~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~- 191 (425)
T 1r5m_A 125 TGVENGELRLWNKT--G--ALLNVLNFHRAPIVSVKWN--------KDGTHIISMDVENVTILWNVISGTVMQHFELKE- 191 (425)
T ss_dssp EEETTSCEEEEETT--S--CEEEEECCCCSCEEEEEEC--------TTSSEEEEEETTCCEEEEETTTTEEEEEECCC--
T ss_pred EEeCCCeEEEEeCC--C--CeeeeccCCCccEEEEEEC--------CCCCEEEEEecCCeEEEEECCCCcEEEEeeccc-
Confidence 36789999999944 3 4567888999999999999 889999999999999999998877655443322
Q ss_pred cc---------------eeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCC
Q 048511 81 KE---------------VISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQ 137 (351)
Q Consensus 81 ~~---------------~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~ 137 (351)
.. +.++.+++++. ++++..++.+.++. .+.+|...|.+++|+ +++++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~------~~~~~--- 261 (425)
T 1r5m_A 192 TGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN------DTNKL--- 261 (425)
T ss_dssp --------------CCCBSCCEEEETTE-EEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEE------TTTTE---
T ss_pred cCccceeeccccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEEC------CCCCE---
Confidence 22 77888888755 66777777777664 456789999999999 78888
Q ss_pred CceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccc
Q 048511 138 PSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKV 217 (351)
Q Consensus 138 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 217 (351)
|++++.|+.|++||++. +.....+. .|...|.+++|+|++ .+++++.|+.|++||+++. .++..
T Consensus 262 ---l~~~~~d~~i~i~d~~~--~~~~~~~~-----~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-----~~~~~ 325 (425)
T 1r5m_A 262 ---LLSASDDGTLRIWHGGN--GNSQNCFY-----GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN-----TLLAL 325 (425)
T ss_dssp ---EEEEETTSCEEEECSSS--BSCSEEEC-----CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT-----EEEEE
T ss_pred ---EEEEcCCCEEEEEECCC--CccceEec-----CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC-----cEeEe
Confidence 99999999999999998 65555554 678899999999999 9999999999999999886 55777
Q ss_pred cccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccccc----------CccceEEecccccccc--ceeEEEEeee
Q 048511 218 PSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM----------GENSWHEVARPQVHGH--DINCVTIIQG 285 (351)
Q Consensus 218 ~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~----------~~~~~~~~~~~~~~~~--~i~~~~~~~~ 285 (351)
+..|...|.+++|+|++++|++++.||.|++||+.+...... .......+..+..|.. .|++++|+|
T Consensus 326 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~- 404 (425)
T 1r5m_A 326 SIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC- 404 (425)
T ss_dssp EECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECT-
T ss_pred cccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC-
Confidence 888999999999999999999999999999999976541000 0001114555667755 899999999
Q ss_pred CCCcEEEEecCCCeEEEEecCc
Q 048511 286 KGNHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 286 ~~~~~l~s~~~dg~v~vw~~~~ 307 (351)
++.+|++++.||.|++|+++|
T Consensus 405 -~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 405 -AGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp -TSSEEEEEESSSCCEEEECCC
T ss_pred -CCceEEEEecCceEEEEeecC
Confidence 899999999999999999864
No 54
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=6e-35 Score=257.48 Aligned_cols=279 Identities=14% Similarity=0.168 Sum_probs=218.2
Q ss_pred CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCC-CccEEEEeeCCCcEEEEecCCCcccceee-------
Q 048511 5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEA-ISILLVSSSQDKVIRIWKLALRGSSANTQ------- 76 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~------- 76 (351)
++.+++|+.+. ++ ....+.+|.+.|++++|+ + ++++|++++.||.|++||+.+........
T Consensus 22 ~~~~~v~~~~~-~~--~~~~~~~h~~~v~~~~~s--------~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 90 (408)
T 4a11_B 22 ESTRRVLGLEL-NK--DRDVERIHGGGINTLDIE--------PVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSI 90 (408)
T ss_dssp HHHHHHHTEEE-CT--TEEECCCCSSCEEEEEEC--------TTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEE
T ss_pred cCcceeecccc-Cc--ceeeeeccCCcEEEEEEe--------cCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccc
Confidence 45677888776 43 245677899999999999 7 89999999999999999999876654433
Q ss_pred -----cccccceeeeEeee-cCCeEEecCCceeEEEEEec-------cccccceEEEEecCCCCCCCCCcccCCCceeEE
Q 048511 77 -----STYRKEVISLASYI-EGPVLVAGSSSYQVSVESLL-------IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILS 143 (351)
Q Consensus 77 -----~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~-------~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s 143 (351)
..+...+.++.|++ ++..+++++.++.+.++..- ..+...+.++.+.|.. +++.+ +++
T Consensus 91 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------~~~ 161 (408)
T 4a11_B 91 GRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVS---TKHCL------VAV 161 (408)
T ss_dssp CTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSC---SSCCE------EEE
T ss_pred cccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCC---CCCcE------EEE
Confidence 23567899999999 77899999999988877642 2366789999999654 45667 999
Q ss_pred eecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCccc-----------C
Q 048511 144 ASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDID-----------N 211 (351)
Q Consensus 144 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~-----------~ 211 (351)
++.|+.|++||++. +..+..+. .|...|.+++|+|+++ .+++++.||.|++||++..... .
T Consensus 162 ~~~~~~v~~~d~~~--~~~~~~~~-----~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 234 (408)
T 4a11_B 162 GTRGPKVQLCDLKS--GSCSHILQ-----GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS 234 (408)
T ss_dssp EESSSSEEEEESSS--SCCCEEEC-----CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSC
T ss_pred EcCCCeEEEEeCCC--cceeeeec-----CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccc
Confidence 99999999999998 66655554 7888999999999998 5889999999999999875411 0
Q ss_pred cccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccC-------------------------------
Q 048511 212 WQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMG------------------------------- 260 (351)
Q Consensus 212 ~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~------------------------------- 260 (351)
.........|...|.+++|+|++++|++++.|+.|++||+.++......
T Consensus 235 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (408)
T 4a11_B 235 QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS 314 (408)
T ss_dssp CCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETT
T ss_pred eeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCC
Confidence 1122233678899999999999999999999999999999876532110
Q ss_pred ------ccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhc
Q 048511 261 ------ENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKT 312 (351)
Q Consensus 261 ------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~ 312 (351)
......+..+.+|...|++++|+| ++.+|++++.||.|++|++. ++.+..
T Consensus 315 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~s~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 315 TIAVYTVYSGEQITMLKGHYKTVDCCVFQS--NFQELYSGSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp EEEEEETTTCCEEEEECCCSSCEEEEEEET--TTTEEEEEETTSCEEEEEECC------
T ss_pred EEEEEECcCCcceeeeccCCCeEEEEEEcC--CCCEEEEECCCCeEEEEeCCCCCccCC
Confidence 011234555667889999999999 89999999999999999987 444443
No 55
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.3e-34 Score=249.61 Aligned_cols=267 Identities=15% Similarity=0.200 Sum_probs=211.2
Q ss_pred EeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccc---ceeecccccceeeeEeee--cCCeEEe
Q 048511 23 CELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSS---ANTQSTYRKEVISLASYI--EGPVLVA 97 (351)
Q Consensus 23 ~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~l~~ 97 (351)
..+.+|.+.|++++|+ +++++|++++.||.|++||+.++... ......+...+.+++|++ ++..+++
T Consensus 5 ~~~~gH~~~v~~~~~~--------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s 76 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYD--------FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIAS 76 (351)
T ss_dssp CEECCCSSCEEEEEEC--------SSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEE
T ss_pred ccCcccccceeEEEEc--------CCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEE
Confidence 3567999999999999 88999999999999999999876432 222334577899999999 6999999
Q ss_pred cCCceeEEEEEe-----------------ccccccceEEEEecCCCCCCCC--CcccCCCceeEEeecCCeEEEEeccCC
Q 048511 98 GSSSYQVSVESL-----------------LIGHEDWVYSVQWEPPSTAPSD--GVSCQQPSSILSASMDKTMMIWQPEKT 158 (351)
Q Consensus 98 ~~~~~~~~~~~~-----------------~~~h~~~v~~l~~~p~~~~~~~--~~~~~~~~~l~s~~~d~~i~iwd~~~~ 158 (351)
++.++.+.+|.. +.+|...|.+++|+ ++ +.+ |++++.|+.|++||++.
T Consensus 77 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~------l~~~~~dg~v~iwd~~~- 143 (351)
T 3f3f_A 77 ASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFA------PAHLGLK------LACLGNDGILRLYDALE- 143 (351)
T ss_dssp EETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEEC------CGGGCSE------EEEEETTCEEEEEECSS-
T ss_pred EcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEc------CCCCCcE------EEEecCCCcEEEecCCC-
Confidence 998888876643 45788999999999 56 788 99999999999999987
Q ss_pred CcceEEEEEe--------ccccccccceEEEEEcCC---CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEE
Q 048511 159 TGIWMNVVTV--------GELSHSALGFYGGHWSPD---GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD 227 (351)
Q Consensus 159 ~~~~~~~~~~--------~~~~~~~~~i~~i~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~ 227 (351)
+..+..+.. .....+...+.+++|+|+ +..+++++.++.+.+|+...+.. ..+..+.+|...|++
T Consensus 144 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~i~~ 219 (351)
T 3f3f_A 144 -PSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL---HVAAKLPGHKSLIRS 219 (351)
T ss_dssp -TTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE---EEEEECCCCCSCEEE
T ss_pred -hHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce---eeeeecCCCCcceeE
Confidence 332222111 012256778999999997 89999999999998887766532 346778889999999
Q ss_pred EEeecCC----CEEEEEeCCCcEEEEcCCCcccccc------------------------------------CccceEEe
Q 048511 228 ISWSRSS----DYLLSVSHDQTTRVFAPWKNVASLM------------------------------------GENSWHEV 267 (351)
Q Consensus 228 v~~sp~~----~~l~s~~~dg~i~vwd~~~~~~~~~------------------------------------~~~~~~~~ 267 (351)
++|+|++ ++|++++.||.|++||++....... .......+
T Consensus 220 ~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (351)
T 3f3f_A 220 ISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELL 299 (351)
T ss_dssp EEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEE
T ss_pred EEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEE
Confidence 9999998 8999999999999999976421100 01123456
Q ss_pred ccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeec
Q 048511 268 ARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHA 316 (351)
Q Consensus 268 ~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~ 316 (351)
..+.+|...|++++|+| ++.+|++++.||.|++|+++ ++.++.+...
T Consensus 300 ~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~ 347 (351)
T 3f3f_A 300 SEHDDHNGEVWSVSWNL--TGTILSSAGDDGKVRLWKATYSNEFKCMSVI 347 (351)
T ss_dssp EEECTTSSCEEEEEECS--SSCCEEEEETTSCEEEEEECTTSCEEEEEEE
T ss_pred EEEecccccEEEEEEcC--CCCEEEEecCCCcEEEEecCcCcchhheeeh
Confidence 66778999999999999 89999999999999999987 5555555443
No 56
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.4e-34 Score=245.96 Aligned_cols=266 Identities=18% Similarity=0.244 Sum_probs=204.1
Q ss_pred CCCce--EEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCC-ccEEEEeeCCCcEEEEecCCCcccc----ee
Q 048511 3 GLDNK--IHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAI-SILLVSSSQDKVIRIWKLALRGSSA----NT 75 (351)
Q Consensus 3 ~~dg~--i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~----~~ 75 (351)
...|+ ++++.... .++....+|+||.+.|++|+|+ |+ +++|+|||.|++|+|||+.+.+... ..
T Consensus 11 ~d~g~~~~~~~~~~~-~~~~l~~tL~GH~~~V~~v~~s--------p~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~ 81 (340)
T 4aow_A 11 VDLGTENLYFQSMMT-EQMTLRGTLKGHNGWVTQIATT--------PQFPDMILSASRDKTIIMWKLTRDETNYGIPQRA 81 (340)
T ss_dssp ----------------CEEEEEEEECCCSSCEEEEEEC--------TTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEE
T ss_pred cCCCCccEEEEEccC-CceEEEEEECCccCCEEEEEEe--------CCCCCEEEEEcCCCeEEEEECCCCCcccceeeEE
Confidence 33454 44455555 5567777899999999999999 55 6899999999999999998765432 22
Q ss_pred ecccccceeeeEeeecCCeEEecCCceeEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC
Q 048511 76 QSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD 147 (351)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d 147 (351)
...+...+.++.|++++.++++++.++.+..+.. ...+...+..+.+. +++.+ |++++.|
T Consensus 82 l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~------l~s~s~d 149 (340)
T 4aow_A 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS------SDNRQ------IVSGSRD 149 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC------TTSSC------EEEEETT
T ss_pred EeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEe------ecCcc------ceeecCC
Confidence 3445678999999999999999999988866543 44566778888888 67888 9999999
Q ss_pred CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCC--CEEEEEeeCCeEEEEEcccCcccCcccccccccccccE
Q 048511 148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG--RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAV 225 (351)
Q Consensus 148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v 225 (351)
+.+++||+.. ..... . ....|...+..++|++++ .++++++.|+.|++||+++. +++..+.+|...|
T Consensus 150 ~~~~~~d~~~--~~~~~-~---~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-----~~~~~~~~h~~~v 218 (340)
T 4aow_A 150 KTIKLWNTLG--VCKYT-V---QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-----KLKTNHIGHTGYL 218 (340)
T ss_dssp SCEEEECTTS--CEEEE-E---CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT-----EEEEEECCCSSCE
T ss_pred CeEEEEEeCC--CceEE-E---EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC-----ceeeEecCCCCcE
Confidence 9999999876 32221 1 234678889999998865 57889999999999999987 5677888999999
Q ss_pred EEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511 226 MDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA 305 (351)
Q Consensus 226 ~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~ 305 (351)
++++|+|++++|++++.|+.|++||+++.. .+..+. +...|.+++|+| ++ .+++++.|+.|++||+
T Consensus 219 ~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~----------~~~~~~-~~~~v~~~~~~~--~~-~~~~~~~d~~i~iwd~ 284 (340)
T 4aow_A 219 NTVTVSPDGSLCASGGKDGQAMLWDLNEGK----------HLYTLD-GGDIINALCFSP--NR-YWLCAATGPSIKIWDL 284 (340)
T ss_dssp EEEEECTTSSEEEEEETTCEEEEEETTTTE----------EEEEEE-CSSCEEEEEECS--SS-SEEEEEETTEEEEEET
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEEeccCc----------eeeeec-CCceEEeeecCC--CC-ceeeccCCCEEEEEEC
Confidence 999999999999999999999999998776 343443 345799999998 55 5566778999999998
Q ss_pred C-chhhhcee
Q 048511 306 P-LSFLKTLN 314 (351)
Q Consensus 306 ~-~~~~~~~~ 314 (351)
+ +..+..+.
T Consensus 285 ~~~~~~~~~~ 294 (340)
T 4aow_A 285 EGKIIVDELK 294 (340)
T ss_dssp TTTEEEEEEC
T ss_pred CCCeEEEecc
Confidence 7 44444444
No 57
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-34 Score=249.66 Aligned_cols=253 Identities=18% Similarity=0.236 Sum_probs=206.3
Q ss_pred EEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc-cceeecccccceeeeEeeec--CCeEEe
Q 048511 21 RACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS-SANTQSTYRKEVISLASYIE--GPVLVA 97 (351)
Q Consensus 21 ~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~l~~ 97 (351)
.+..+.+|.+.|++++|+ +++++|++++.||.|++||+..... .......+...+.++.|+++ +.++++
T Consensus 3 ~~~~~~~h~~~v~~~~~s--------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 74 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLD--------YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILAS 74 (379)
T ss_dssp --CCEEECCCCEEEEEEC--------SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred ccEEecCCcccEEEEEEc--------CCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEE
Confidence 456789999999999999 8899999999999999999974322 22233345678899999877 999999
Q ss_pred cCCceeEEEEEe----------ccccccceEEEEecCCCCCCCC--CcccCCCceeEEeecCCeEEEEeccCCCcceEEE
Q 048511 98 GSSSYQVSVESL----------LIGHEDWVYSVQWEPPSTAPSD--GVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNV 165 (351)
Q Consensus 98 ~~~~~~~~~~~~----------~~~h~~~v~~l~~~p~~~~~~~--~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 165 (351)
++.++.+.+|.. +.+|...|.+++|+ ++ +.+ |++++.|+.|++||++.........
T Consensus 75 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~------l~~~~~d~~i~v~d~~~~~~~~~~~ 142 (379)
T 3jrp_A 75 CSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWA------PHEYGPL------LLVASSDGKVSVVEFKENGTTSPII 142 (379)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC------CGGGCSE------EEEEETTSEEEEEECCTTSCCCEEE
T ss_pred eccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeC------CCCCCCE------EEEecCCCcEEEEecCCCCceeeEE
Confidence 999888876653 45688999999999 56 778 9999999999999999843233333
Q ss_pred EEeccccccccceEEEEEcC-------------CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511 166 VTVGELSHSALGFYGGHWSP-------------DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR 232 (351)
Q Consensus 166 ~~~~~~~~~~~~i~~i~~~~-------------~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 232 (351)
+. .|...|.+++|+| ++.++++++.|+.|++||+++... ...+...+.+|...|.+++|+|
T Consensus 143 ~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~h~~~v~~~~~sp 216 (379)
T 3jrp_A 143 ID-----AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-TYVLESTLEGHSDWVRDVAWSP 216 (379)
T ss_dssp EE-----CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT-EEEEEEEECCCSSCEEEEEECC
T ss_pred ec-----CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc-ceeeEEEEecccCcEeEEEECC
Confidence 33 6788999999999 699999999999999999987531 1134567788999999999999
Q ss_pred C---CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 233 S---SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 233 ~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
+ +++|++++.||.|++||++.+.. .....+.....|...|++++|+| ++.+|++++.||.|++|++.
T Consensus 217 ~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 217 TVLLRSYLASVSQDRTCIIWTQDNEQG-----PWKKTLLKEEKFPDVLWRASWSL--SGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp CCSSSEEEEEEETTSCEEEEEESSTTS-----CCEEEESSSSCCSSCEEEEEECS--SSCCEEEEESSSSEEEEEEE
T ss_pred CCCCCCeEEEEeCCCEEEEEeCCCCCc-----cceeeeeccccCCCcEEEEEEcC--CCCEEEEecCCCcEEEEeCC
Confidence 9 89999999999999999988641 11223444456788899999999 99999999999999999976
No 58
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4e-34 Score=241.87 Aligned_cols=236 Identities=18% Similarity=0.215 Sum_probs=181.6
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc-eeeccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA-NTQSTY 79 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~-~~~~~~ 79 (351)
+|+.|++|+|||+.. +....+.++.+|.+.|++++|+ +. .++++|+||+.|++|++||+.++.... .....+
T Consensus 26 s~s~D~~v~iw~~~~-~~~~~~~~l~gH~~~V~~v~~s----~~--~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h 98 (297)
T 2pm7_B 26 TCSSDKTIKIFEVEG-ETHKLIDTLTGHEGPVWRVDWA----HP--KFGTILASCSYDGKVMIWKEENGRWSQIAVHAVH 98 (297)
T ss_dssp EEETTSCEEEEEBCS-SCBCCCEEECCCSSCEEEEEEC----CG--GGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCC
T ss_pred EEeCCCEEEEEecCC-CCcEEEEEEccccCCeEEEEec----CC--CcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecC
Confidence 478999999999976 4335567899999999999998 21 247899999999999999998764322 223345
Q ss_pred ccceeeeEeeec--CCeEEecCCceeEEEEEe----------ccccccceEEEEecCCCCC-------CCCCcccCCCce
Q 048511 80 RKEVISLASYIE--GPVLVAGSSSYQVSVESL----------LIGHEDWVYSVQWEPPSTA-------PSDGVSCQQPSS 140 (351)
Q Consensus 80 ~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~----------~~~h~~~v~~l~~~p~~~~-------~~~~~~~~~~~~ 140 (351)
...+.+++|+|+ +..+++++.++.++++.. +.+|...|.+++|+|.... .+++++
T Consensus 99 ~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~------ 172 (297)
T 2pm7_B 99 SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK------ 172 (297)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCE------
T ss_pred CCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcce------
Confidence 667899999997 889999999998877653 4578889999999963210 012456
Q ss_pred eEEeecCCeEEEEeccCCCcc--eEEEEEeccccccccceEEEEEcCCC---CEEEEEeeCCeEEEEEcccCcccCcccc
Q 048511 141 ILSASMDKTMMIWQPEKTTGI--WMNVVTVGELSHSALGFYGGHWSPDG---RSILAHGYGGAFHLWRNVGVDIDNWQPQ 215 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~~~~~---~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 215 (351)
|++|+.|++|++||++..... ....+ .+|...|.+++|+|++ .+|++++.|++|++||++..........
T Consensus 173 l~sgs~D~~v~lwd~~~~~~~~~~~~~l-----~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~ 247 (297)
T 2pm7_B 173 FVTGGADNLVKIWKYNSDAQTYVLESTL-----EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTL 247 (297)
T ss_dssp EEEEETTSCEEEEEEETTTTEEEEEEEE-----CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEE
T ss_pred EEEEcCCCcEEEEEEcCCCceEEEEEEe-----cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceee
Confidence 999999999999999873221 22233 4789999999999985 8999999999999999976421000011
Q ss_pred cccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCc
Q 048511 216 KVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKN 254 (351)
Q Consensus 216 ~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~ 254 (351)
.....|...|.+++|+|++++|++++.|+.|+||+....
T Consensus 248 ~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 248 LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (297)
T ss_dssp SSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred eecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCC
Confidence 122467889999999999999999999999999998643
No 59
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-35 Score=261.01 Aligned_cols=273 Identities=17% Similarity=0.245 Sum_probs=215.7
Q ss_pred CCCCCceEEEEEccCCC-ceEEEEeeeecCCceeEEEeeCCcccCCCCC-ccEEEEeeCCCcEEEEecCCCc------cc
Q 048511 1 MGGLDNKIHLYRGQRTG-KFVRACELKGHTDWIRSLDFSLPVCTSGEAI-SILLVSSSQDKVIRIWKLALRG------SS 72 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~------~~ 72 (351)
+|+.||.|++|++.... ....+..+.+|.+.|++++|+ ++ +.+|++++.|+.|++||+.+.. ..
T Consensus 84 ~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~--------~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 155 (416)
T 2pm9_A 84 GALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFN--------AKQDNVLASGGNNGEIFIWDMNKCTESPSNYTP 155 (416)
T ss_dssp EEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEEC--------SSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCC
T ss_pred EEccCCeEEEeecccccccccchhhccCCccceEEEEEc--------CCCCCEEEEEcCCCeEEEEECCCCccccccccc
Confidence 36789999999998611 113667888999999999999 76 8899999999999999998876 22
Q ss_pred cee--ecccccceeeeEeeec-CCeEEecCCceeEEEEEe--------cccc------ccceEEEEecCCCCCCCCC-cc
Q 048511 73 ANT--QSTYRKEVISLASYIE-GPVLVAGSSSYQVSVESL--------LIGH------EDWVYSVQWEPPSTAPSDG-VS 134 (351)
Q Consensus 73 ~~~--~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~--------~~~h------~~~v~~l~~~p~~~~~~~~-~~ 134 (351)
... ...+...+.+++|+++ +..+++++.++.+.++.. +..| ...|.+++|+ +++ .+
T Consensus 156 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~ 229 (416)
T 2pm9_A 156 LTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH------PKNSTR 229 (416)
T ss_dssp BCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC------SSCTTE
T ss_pred cccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC------CCCCCE
Confidence 222 2344667889999999 788999998888877653 3333 7889999999 554 57
Q ss_pred cCCCceeEEeecCC---eEEEEeccCCCcceEEEEEecccc-ccccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCcc
Q 048511 135 CQQPSSILSASMDK---TMMIWQPEKTTGIWMNVVTVGELS-HSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVDI 209 (351)
Q Consensus 135 ~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~ 209 (351)
|++++.|+ .|++||++... .... ... .|...|.+++|+| ++++|++++.|+.|++||++++
T Consensus 230 ------l~~~~~d~~~~~i~~~d~~~~~-~~~~-----~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~-- 295 (416)
T 2pm9_A 230 ------VATATGSDNDPSILIWDLRNAN-TPLQ-----TLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA-- 295 (416)
T ss_dssp ------EEEEECCSSSCCCCEEETTSTT-SCSB-----CCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC--
T ss_pred ------EEEEECCCCCceEEEEeCCCCC-CCcE-----EeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC--
Confidence 99999998 99999999731 2222 123 5788999999999 8999999999999999999886
Q ss_pred cCcccccccccccccEEEEEeecCC-CEEEEEeCCCcEEEEcCCCccccccCcc-----------ceE------------
Q 048511 210 DNWQPQKVPSGHFAAVMDISWSRSS-DYLLSVSHDQTTRVFAPWKNVASLMGEN-----------SWH------------ 265 (351)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~v~~sp~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~-----------~~~------------ 265 (351)
+++..+.+|...|.+++|+|++ .+|++++.|+.|++||+........... .+.
T Consensus 296 ---~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (416)
T 2pm9_A 296 ---EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPS 372 (416)
T ss_dssp ---CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCC
T ss_pred ---ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccc
Confidence 5678888999999999999998 8999999999999999987653221000 000
Q ss_pred --EeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 266 --EVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 266 --~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
.+..+..|...+++++|+| ++++|++++.|+.|+||++.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~s~--dg~~la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 373 VFHLQAPTWYGEPSPAAHWAF--GGKLVQITPDGKGVSITNPK 413 (416)
T ss_dssp SSCCCCCSTTCCCSCCCEEET--TTEEECBCTTSSCBCCBCCC
T ss_pred cccccCCccccCCccceEEee--CCeEEEEeCCCCeEEEEEec
Confidence 0011223667788999999 99999999999999999976
No 60
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-34 Score=257.61 Aligned_cols=273 Identities=11% Similarity=0.066 Sum_probs=207.1
Q ss_pred EEEccCCCceEEEEee-eecCCceeEEEeeCCcccCCCC-CccEEEEeeCCCcEEEEecCC---Ccccc-eeecccccce
Q 048511 10 LYRGQRTGKFVRACEL-KGHTDWIRSLDFSLPVCTSGEA-ISILLVSSSQDKVIRIWKLAL---RGSSA-NTQSTYRKEV 83 (351)
Q Consensus 10 vw~~~~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~~~~~-~~~~l~t~~~dg~i~iwd~~~---~~~~~-~~~~~~~~~~ 83 (351)
.|+... ..+..+ .+|.+.|++++|+ + ++++|++|+.||+|++||+.+ +.... .....+...+
T Consensus 47 ~w~~~g----~~~~~~~~~h~~~V~~~~~s--------~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v 114 (437)
T 3gre_A 47 MGNLRG----KLIATLMENEPNSITSSAVS--------PGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTV 114 (437)
T ss_dssp GGGCCC----CEEEEECTTTTSCEEEEEEE--------CSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCE
T ss_pred cccccc----eEEeeeccCCCCceEEEEEC--------CCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCE
Confidence 466443 456677 8999999999999 7 899999999999999999976 33221 2222457789
Q ss_pred eeeEeeecCCeEEecCCceeEEEEEec---c--------c------------cccceEEEEecCCCCCCCCCcccCCCce
Q 048511 84 ISLASYIEGPVLVAGSSSYQVSVESLL---I--------G------------HEDWVYSVQWEPPSTAPSDGVSCQQPSS 140 (351)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~---~--------~------------h~~~v~~l~~~p~~~~~~~~~~~~~~~~ 140 (351)
.+++|++++..+++++.++.+.+|..- . + +...+.++.+... +++.+
T Consensus 115 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~------ 184 (437)
T 3gre_A 115 TQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVN----EEKSL------ 184 (437)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEEC----SSCEE------
T ss_pred EEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEc----CCCCE------
Confidence 999999999999999999999888652 1 1 3334444442210 56777
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc-
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS- 219 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~- 219 (351)
|++++.|+.|++||+++ +..+..+.. ..|...|.+++|+|++++|++++.||.|++||++++ .++..+.
T Consensus 185 l~~~~~d~~i~iwd~~~--~~~~~~~~~---~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~ 254 (437)
T 3gre_A 185 LVALTNLSRVIIFDIRT--LERLQIIEN---SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN-----VLIRSWSF 254 (437)
T ss_dssp EEEEETTSEEEEEETTT--CCEEEEEEC---CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT-----EEEEEEBC
T ss_pred EEEEeCCCeEEEEeCCC--CeeeEEEcc---CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc-----cEEEEEec
Confidence 99999999999999998 777776651 127789999999999999999999999999999986 4566554
Q ss_pred cccccEEEEEee----cCCCEEEEEeCCCcEEEEcCCCccccccCc--------cceEEec------cccc--cccceeE
Q 048511 220 GHFAAVMDISWS----RSSDYLLSVSHDQTTRVFAPWKNVASLMGE--------NSWHEVA------RPQV--HGHDINC 279 (351)
Q Consensus 220 ~~~~~v~~v~~s----p~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--------~~~~~~~------~~~~--~~~~i~~ 279 (351)
.|...|.+++|+ |++.+|++++.|+.|++||+++++....-. ..+.+.. .+.+ |...|++
T Consensus 255 ~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 334 (437)
T 3gre_A 255 GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALST 334 (437)
T ss_dssp TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCC
T ss_pred CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEE
Confidence 677899999555 567899999999999999998776321000 0000000 1122 7778999
Q ss_pred EEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511 280 VTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT 317 (351)
Q Consensus 280 ~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~ 317 (351)
++|++ +.+|++|+.|+.|++||+. ++.+..+.++.
T Consensus 335 l~~~~---~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 370 (437)
T 3gre_A 335 ISVSN---DKILLTDEATSSIVMFSLNELSSSKAVISPS 370 (437)
T ss_dssp EEEET---TEEEEEEGGGTEEEEEETTCGGGCEEEECC-
T ss_pred EEECC---ceEEEecCCCCeEEEEECCCcccceEEeccc
Confidence 99985 6899999999999999987 77777777654
No 61
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-34 Score=254.83 Aligned_cols=257 Identities=16% Similarity=0.216 Sum_probs=208.3
Q ss_pred CCCCCceEEEEEc----cCCCce----EEEEeeee----------cCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEE
Q 048511 1 MGGLDNKIHLYRG----QRTGKF----VRACELKG----------HTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIR 62 (351)
Q Consensus 1 tg~~dg~i~vw~~----~~~~~~----~~~~~~~~----------h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~ 62 (351)
+|+.||.|++|++ .+ ++. .....+.. |.+.|++++|+ +++++|++++.||.|+
T Consensus 63 ~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--------~~~~~l~~~~~dg~i~ 133 (425)
T 1r5m_A 63 YGEKNSVARLARIVETDQE-GKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS--------HDGNSIVTGVENGELR 133 (425)
T ss_dssp EEETBTEEEEEEEEEC-------CEEEEEEEEEECCCCCC------CBCEEEEEEC--------TTSSEEEEEETTSCEE
T ss_pred EecCCceEEEEEEecccCC-ccccccccccccccccccccccccCCCCceEEEEEc--------CCCCEEEEEeCCCeEE
Confidence 4678999999999 76 531 02333333 68899999999 8899999999999999
Q ss_pred EEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEe--------ccccccc---------------eEE
Q 048511 63 IWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDW---------------VYS 119 (351)
Q Consensus 63 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~h~~~---------------v~~ 119 (351)
+|| .++.... ....+...+.++.|++++..+++++.++.+.++.. +..+... +.+
T Consensus 134 i~~-~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (425)
T 1r5m_A 134 LWN-KTGALLN-VLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVD 211 (425)
T ss_dssp EEE-TTSCEEE-EECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSC
T ss_pred EEe-CCCCeee-eccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeE
Confidence 999 3343333 33345678999999999999999998888877653 3344444 888
Q ss_pred EEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeE
Q 048511 120 VQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAF 199 (351)
Q Consensus 120 l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i 199 (351)
+.|+ ++ .. +++++.|+.|++||++. +.....+. .|...|.+++|+|++++|++++.|+.|
T Consensus 212 ~~~~------~~-~~------~~~~~~~g~i~~~d~~~--~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~d~~i 271 (425)
T 1r5m_A 212 VEWV------DD-DK------FVIPGPKGAIFVYQITE--KTPTGKLI-----GHHGPISVLEFNDTNKLLLSASDDGTL 271 (425)
T ss_dssp CEEE------ET-TE------EEEECGGGCEEEEETTC--SSCSEEEC-----CCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred EEEc------CC-CE------EEEEcCCCeEEEEEcCC--Cceeeeec-----cCCCceEEEEECCCCCEEEEEcCCCEE
Confidence 8888 44 34 89999999999999998 55555554 678899999999999999999999999
Q ss_pred EEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeE
Q 048511 200 HLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINC 279 (351)
Q Consensus 200 ~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (351)
++||+++. .++..+..|...|.+++|+|++ +|++++.|+.|++||++++. .+..+..|...|.+
T Consensus 272 ~i~d~~~~-----~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~----------~~~~~~~~~~~i~~ 335 (425)
T 1r5m_A 272 RIWHGGNG-----NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNT----------LLALSIVDGVPIFA 335 (425)
T ss_dssp EEECSSSB-----SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTE----------EEEEEECTTCCEEE
T ss_pred EEEECCCC-----ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCc----------EeEecccCCccEEE
Confidence 99999886 4577778899999999999999 99999999999999998776 55556678889999
Q ss_pred EEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 280 VTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 280 ~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
++|+| ++.+|++++.||.|++|++.
T Consensus 336 ~~~s~--~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 336 GRISQ--DGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp EEECT--TSSEEEEEETTSCEEEEECH
T ss_pred EEEcC--CCCEEEEEECCCeEEEEECC
Confidence 99999 89999999999999999987
No 62
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.3e-34 Score=252.78 Aligned_cols=262 Identities=17% Similarity=0.187 Sum_probs=207.2
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.||.|++||+.+ + .....+..| ..+....|+ +++++|++++.||.|++||+.++.... ....+.
T Consensus 73 ~~~~d~~v~i~d~~~-~--~~~~~~~~~-~~~~~~~~~--------~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~h~ 139 (420)
T 3vl1_A 73 KARLDGHDFLFNTII-R--DGSKMLKRA-DYTAVDTAK--------LQMRRFILGTTEGDIKVLDSNFNLQRE-IDQAHV 139 (420)
T ss_dssp EEEETTEEEEEECCS-E--ETTTTSCSC-CEEEEEEEC--------SSSCEEEEEETTSCEEEECTTSCEEEE-ETTSSS
T ss_pred EEEcCCcEEEEEecc-c--ceeeEEecC-CceEEEEEe--------cCCCEEEEEECCCCEEEEeCCCcceee-eccccc
Confidence 367899999999987 4 233445555 344445677 789999999999999999998765543 334567
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI 152 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i 152 (351)
..+.+++|+|++..|++++.++.+.+|. .+.+|...|.+++|+ +++++ |++++.|+.|++
T Consensus 140 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~------~~~~~------l~s~~~d~~v~i 207 (420)
T 3vl1_A 140 SEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII------DRGRN------VLSASLDGTIRL 207 (420)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE------TTTTE------EEEEETTSCEEE
T ss_pred CccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc------CCCCE------EEEEcCCCcEEE
Confidence 7899999999999999999999988775 366799999999999 78888 999999999999
Q ss_pred EeccCCCcceEEEEEecccccc---------------------ccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccC
Q 048511 153 WQPEKTTGIWMNVVTVGELSHS---------------------ALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDN 211 (351)
Q Consensus 153 wd~~~~~~~~~~~~~~~~~~~~---------------------~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 211 (351)
||+++ +..+..+.... .+ ...+.+++|+|++++|++++.||.|++||+++++
T Consensus 208 wd~~~--~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--- 280 (420)
T 3vl1_A 208 WECGT--GTTIHTFNRKE--NPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE--- 280 (420)
T ss_dssp EETTT--TEEEEEECBTT--BTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC---
T ss_pred eECCC--CceeEEeecCC--CCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc---
Confidence 99998 66666554211 22 2345556668999999999999999999998864
Q ss_pred cccccccccccccEEEEEeecCCC-EEEEEeCCCcEEEEcCCCccccccCccceEEeccccc-cccceeEEEEeeeCCCc
Q 048511 212 WQPQKVPSGHFAAVMDISWSRSSD-YLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQV-HGHDINCVTIIQGKGNH 289 (351)
Q Consensus 212 ~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~ 289 (351)
........|...|.+++|+|+++ +|++++.||.|++||++++.. .+..+.. |...|+++.+ + ++.
T Consensus 281 -~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~---------~~~~~~~~~~~~v~~~~~-~--~~~ 347 (420)
T 3vl1_A 281 -QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC---------PVGEFLINEGTPINNVYF-A--AGA 347 (420)
T ss_dssp -EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS---------CSEEEEESTTSCEEEEEE-E--TTE
T ss_pred -eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC---------chhhhhccCCCCceEEEe-C--CCC
Confidence 22333446888999999999998 999999999999999988752 2233333 5667888855 4 588
Q ss_pred EEEEecCCCeEEEEecCc
Q 048511 290 RFVSGADEKVARVFEAPL 307 (351)
Q Consensus 290 ~l~s~~~dg~v~vw~~~~ 307 (351)
+|++++.|+.|++|++..
T Consensus 348 ~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 348 LFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp EEEEETTTEEEEEEEECC
T ss_pred EEEEecCCccEEEEeccC
Confidence 999999999999999763
No 63
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.4e-34 Score=252.74 Aligned_cols=275 Identities=11% Similarity=0.074 Sum_probs=213.2
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.||.|++||+.. + .....+.+|.+.|++++|+ +++++|++++.|++|++||+.+++..... ..+.
T Consensus 114 ~~~~dg~i~iwd~~~-~--~~~~~~~~h~~~v~~~~~~--------~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~ 181 (420)
T 3vl1_A 114 LGTTEGDIKVLDSNF-N--LQREIDQAHVSEITKLKFF--------PSGEALISSSQDMQLKIWSVKDGSNPRTL-IGHR 181 (420)
T ss_dssp EEETTSCEEEECTTS-C--EEEEETTSSSSCEEEEEEC--------TTSSEEEEEETTSEEEEEETTTCCCCEEE-ECCS
T ss_pred EEECCCCEEEEeCCC-c--ceeeecccccCccEEEEEC--------CCCCEEEEEeCCCeEEEEeCCCCcCceEE-cCCC
Confidence 467899999999988 6 4566778999999999999 88999999999999999999988766544 3456
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEe--------cc---ccccceEEEEecCCCCC---------------CCCCcc
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESL--------LI---GHEDWVYSVQWEPPSTA---------------PSDGVS 134 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~---~h~~~v~~l~~~p~~~~---------------~~~~~~ 134 (351)
..+.+++|+|++..+++++.++.+.+|.. +. .|...|.++.|.|.... .+++++
T Consensus 182 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 182 ATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKY 261 (420)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEE
T ss_pred CcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCE
Confidence 78999999999999999999998877653 22 34555666665432100 056777
Q ss_pred cCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcccCcc
Q 048511 135 CQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDIDNWQ 213 (351)
Q Consensus 135 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~ 213 (351)
|++++.||.|++||++. +.....+. ..|...|.+++|+|++. +|++++.||.|++||+++.+ .
T Consensus 262 ------l~~~~~dg~i~i~d~~~--~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~----~ 325 (420)
T 3vl1_A 262 ------VIAGHVSGVITVHNVFS--KEQTIQLP----SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE----C 325 (420)
T ss_dssp ------EEEEETTSCEEEEETTT--CCEEEEEC----CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT----S
T ss_pred ------EEEEcCCCeEEEEECCC--CceeEEcc----cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc----C
Confidence 99999999999999998 55554443 25778899999999998 99999999999999998864 3
Q ss_pred ccccccc-ccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCc---
Q 048511 214 PQKVPSG-HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNH--- 289 (351)
Q Consensus 214 ~~~~~~~-~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--- 289 (351)
++..+.. |...|.++. .+++++|++++.|+.|++||+........ ............|...|.+++|+| ++.
T Consensus 326 ~~~~~~~~~~~~v~~~~-~~~~~~l~s~~~d~~v~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~--~~~~~g 401 (420)
T 3vl1_A 326 PVGEFLINEGTPINNVY-FAAGALFVSSGFDTSIKLDIISDPESERP-AIEFETPTFLVSNDDAVSQFCYVS--DDESNG 401 (420)
T ss_dssp CSEEEEESTTSCEEEEE-EETTEEEEEETTTEEEEEEEECCTTCCSC-EECTTSCEEECCSSCCCCEEEEEC--CSSSSC
T ss_pred chhhhhccCCCCceEEE-eCCCCEEEEecCCccEEEEeccCCCCCcc-ceeccCccEEccCCcceEEEEEcc--CCCCcc
Confidence 4566666 667788875 45778999999999999999987532110 000001112346777899999999 787
Q ss_pred EEEEecCCCeEEEEecCc
Q 048511 290 RFVSGADEKVARVFEAPL 307 (351)
Q Consensus 290 ~l~s~~~dg~v~vw~~~~ 307 (351)
.+++.+.+|.+.+|+++.
T Consensus 402 ~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 402 EVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEEEEETTTEEEEEESCC
T ss_pred eEEEEcCCceEEEEeccC
Confidence 777788899999999763
No 64
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.3e-33 Score=242.46 Aligned_cols=241 Identities=12% Similarity=0.197 Sum_probs=203.8
Q ss_pred EeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeec----ccccceeeeEeeecCCeEEec
Q 048511 23 CELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQS----TYRKEVISLASYIEGPVLVAG 98 (351)
Q Consensus 23 ~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~ 98 (351)
....+|.+.|++++|+ +++++|++++ ||.|++||+.++........ .+...+.++.|+++++.++++
T Consensus 45 ~~~~~h~~~v~~~~~~--------~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 115 (337)
T 1gxr_A 45 INTLNHGEVVCAVTIS--------NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG 115 (337)
T ss_dssp EEEECCSSCCCEEEEC--------SSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEE
T ss_pred ceeccCCCceEEEEEe--------cCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEE
Confidence 3445799999999999 8899999999 99999999987754333322 456788999999999999999
Q ss_pred CCceeEEEEE----------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEe
Q 048511 99 SSSYQVSVES----------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTV 168 (351)
Q Consensus 99 ~~~~~~~~~~----------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 168 (351)
+.++.+.++. .+..|...|.+++|+ +++++ |++++.|+.|++||+++ +.....+.
T Consensus 116 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~------l~~~~~dg~v~~~d~~~--~~~~~~~~- 180 (337)
T 1gxr_A 116 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS------PDSKV------CFSCCSDGNIAVWDLHN--QTLVRQFQ- 180 (337)
T ss_dssp ESSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC------TTSSE------EEEEETTSCEEEEETTT--TEEEEEEC-
T ss_pred cCCCcEEEEECCCCCcceeeecccCCCceEEEEEC------CCCCE------EEEEeCCCcEEEEeCCC--Cceeeeee-
Confidence 8888776653 356688899999999 78888 99999999999999998 66666554
Q ss_pred ccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEE
Q 048511 169 GELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRV 248 (351)
Q Consensus 169 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~v 248 (351)
.|...+.+++|+|+++++++++.|+.|++||+++++ .+..+ .+...+.+++|+|++++|++++.|+.|++
T Consensus 181 ----~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-----~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~ 250 (337)
T 1gxr_A 181 ----GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR-----QLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEV 250 (337)
T ss_dssp ----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----EEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ----cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCc-----eEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEE
Confidence 678899999999999999999999999999998863 34443 46788999999999999999999999999
Q ss_pred EcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhh
Q 048511 249 FAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFL 310 (351)
Q Consensus 249 wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~ 310 (351)
||+.... . .....|...|.+++|+| ++.+|++++.||.|++|++. ++.+
T Consensus 251 ~~~~~~~----------~-~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 251 LHVNKPD----------K-YQLHLHESCVLSLKFAY--CGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp EETTSSC----------E-EEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEE
T ss_pred EECCCCC----------e-EEEcCCccceeEEEECC--CCCEEEEecCCCcEEEEECCCCeEE
Confidence 9998775 1 23457888899999999 89999999999999999987 4443
No 65
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.3e-33 Score=245.58 Aligned_cols=232 Identities=11% Similarity=0.103 Sum_probs=179.8
Q ss_pred CCCCceEEEEEccCCC-ceEEEEee-----eecCCceeEEEeeCCcccCCCCCccEEEEe--eCCCcEEEEecCCCcccc
Q 048511 2 GGLDNKIHLYRGQRTG-KFVRACEL-----KGHTDWIRSLDFSLPVCTSGEAISILLVSS--SQDKVIRIWKLALRGSSA 73 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~-~~~~~~~~-----~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~--~~dg~i~iwd~~~~~~~~ 73 (351)
|+.|+.+++|++.... ........ ..+...+.+++|+ |+|++|+++ +.|++|+|||+.+++...
T Consensus 100 ~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fS--------pDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 100 GKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYIS--------REGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp TSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEEC--------TTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred ecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEc--------CCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 5679999999987622 22222222 2344568999999 889987654 579999999998765432
Q ss_pred eeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511 74 NTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW 153 (351)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 153 (351)
. + .|...|.+++|+ |++++ |++++.++ +++|
T Consensus 172 ~-----------------------------------~-~~~~~V~~v~fs------pdg~~------l~s~s~~~-~~~~ 202 (365)
T 4h5i_A 172 E-----------------------------------I-ETRGEVKDLHFS------TDGKV------VAYITGSS-LEVI 202 (365)
T ss_dssp E-----------------------------------E-ECSSCCCEEEEC------TTSSE------EEEECSSC-EEEE
T ss_pred E-----------------------------------e-CCCCceEEEEEc------cCCce------EEecccee-EEEE
Confidence 2 2 267789999999 79998 99988655 6666
Q ss_pred eccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCC----eEEEEEcccCcccCcccccccccccccEEEEE
Q 048511 154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGG----AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDIS 229 (351)
Q Consensus 154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg----~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~ 229 (351)
+..+ +....... ...|...|.+++|+|+++.+++++.|+ .+++|++...... ......+.+|...|++++
T Consensus 203 ~~~~--~~~~~~~~---~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~V~~~~ 276 (365)
T 4h5i_A 203 STVT--GSCIARKT---DFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTS-VLRSKQVTNRFKGITSMD 276 (365)
T ss_dssp ETTT--CCEEEEEC---CCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEE-EEEEEEEESSCSCEEEEE
T ss_pred Eecc--Ccceeeee---cCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceec-ceeeeeecCCCCCeEeEE
Confidence 6666 44333222 236778899999999999999999887 6888988765321 012345678899999999
Q ss_pred eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecc-ccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCch
Q 048511 230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVAR-PQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLS 308 (351)
Q Consensus 230 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 308 (351)
|+|+|++||+|+.|++|+|||+++++ .+.. +.+|...|++++|+| |+.+||+||.|++||||+++.+
T Consensus 277 ~Spdg~~lasgs~D~~V~iwd~~~~~----------~~~~~~~gH~~~V~~v~fSp--dg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 277 VDMKGELAVLASNDNSIALVKLKDLS----------MSKIFKQAHSFAITEVTISP--DSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp ECTTSCEEEEEETTSCEEEEETTTTE----------EEEEETTSSSSCEEEEEECT--TSCEEEEEETTSEEEEEECCTT
T ss_pred ECCCCCceEEEcCCCEEEEEECCCCc----------EEEEecCcccCCEEEEEECC--CCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999999999998876 4544 468999999999999 9999999999999999998743
No 66
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.9e-34 Score=246.06 Aligned_cols=217 Identities=20% Similarity=0.314 Sum_probs=173.5
Q ss_pred eeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCcee
Q 048511 24 ELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQ 103 (351)
Q Consensus 24 ~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 103 (351)
.+.+|.+.|++++|+ +++++||||+.|++|++||+.++..
T Consensus 8 ~~~~H~~~V~~v~~s--------~~g~~lasgs~D~~v~lwd~~~~~~-------------------------------- 47 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMD--------YYGTRLATCSSDRSVKIFDVRNGGQ-------------------------------- 47 (316)
T ss_dssp ------CCEEEEEEC--------GGGCEEEEEETTTEEEEEEEETTEE--------------------------------
T ss_pred ecccccCeEEEeeEc--------CCCCEEEEEeCCCeEEEEEecCCCc--------------------------------
Confidence 567999999999999 8899999999999999999976432
Q ss_pred EEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEE
Q 048511 104 VSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHW 183 (351)
Q Consensus 104 ~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 183 (351)
.....+.+|.++|.+++|+|. .++++ |++|+.|++|++||+++.+......+ ..|...|.+++|
T Consensus 48 -~~~~~l~gH~~~V~~v~~~~~----~~~~~------l~s~s~D~~v~iWd~~~~~~~~~~~~-----~~h~~~V~~v~~ 111 (316)
T 3bg1_A 48 -ILIADLRGHEGPVWQVAWAHP----MYGNI------LASCSYDRKVIIWREENGTWEKSHEH-----AGHDSSVNSVCW 111 (316)
T ss_dssp -EEEEEEECCSSCEEEEEECCG----GGSSC------EEEEETTSCEEEECCSSSCCCEEEEE-----CCCSSCCCEEEE
T ss_pred -EEEEEEcCCCccEEEEEeCCC----CCCCE------EEEEECCCEEEEEECCCCcceEEEEc-----cCCCCceEEEEE
Confidence 122456789999999999841 14778 99999999999999987322333333 378889999999
Q ss_pred cCC--CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC-----------------CCEEEEEeCCC
Q 048511 184 SPD--GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS-----------------SDYLLSVSHDQ 244 (351)
Q Consensus 184 ~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~-----------------~~~l~s~~~dg 244 (351)
+|+ +.+|++++.|+.|++||++.... +.....+.+|...|.+++|+|+ +++|++++.|+
T Consensus 112 ~p~~~g~~lasgs~D~~i~lwd~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~ 189 (316)
T 3bg1_A 112 APHDYGLILACGSSDGAISLLTYTGEGQ--WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDN 189 (316)
T ss_dssp CCTTTCSCEEEECSSSCEEEEEECSSSC--EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTS
T ss_pred CCCCCCcEEEEEcCCCCEEEEecCCCCC--cceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCC
Confidence 998 78999999999999999987521 1234567789999999999997 47899999999
Q ss_pred cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCC----cEEEEecCCCeEEEEecCc
Q 048511 245 TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGN----HRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 245 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~l~s~~~dg~v~vw~~~~ 307 (351)
.|++||++... .+..+..+.+|...|++++|+| ++ .+|++++.|+.|++|++..
T Consensus 190 ~v~lWd~~~~~-------~~~~~~~l~~h~~~V~~v~~sp--~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 190 LIKLWKEEEDG-------QWKEEQKLEAHSDWVRDVAWAP--SIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp BCCEEEECTTS-------CEEEEECCBCCSSCEEEEECCC--CSSCSCCEEEEEETTCEEEEEECSS
T ss_pred eEEEEEeCCCC-------ccceeeecccCCCceEEEEecC--CCCCCCceEEEEcCCCeEEEEEccC
Confidence 99999996543 3446667789999999999999 65 7999999999999999763
No 67
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.4e-34 Score=252.04 Aligned_cols=267 Identities=16% Similarity=0.183 Sum_probs=210.8
Q ss_pred CCCCCceEEEEEccCCCce-EEEEeeeecCCceeEEEeeCCcccCCCC-CccEEEEeeCCCcEEEEecCCCcc------c
Q 048511 1 MGGLDNKIHLYRGQRTGKF-VRACELKGHTDWIRSLDFSLPVCTSGEA-ISILLVSSSQDKVIRIWKLALRGS------S 72 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~-~~~~~~~~h~~~V~~l~~~~~~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~------~ 72 (351)
+|+.||.|+||++...++. ..+..+.+|.+.|++++|+ + ++++|++|+.||+|++||+.++.. .
T Consensus 52 ~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~--------p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~ 123 (402)
T 2aq5_A 52 EASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWC--------PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREP 123 (402)
T ss_dssp CCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEEC--------TTCTTEEEEEETTSEEEEEECCTTCCSSCBCSC
T ss_pred EEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeC--------CCCCCEEEEEeCCCeEEEEEccCCCCccccCCc
Confidence 4788999999999763322 2344678999999999999 7 889999999999999999988742 2
Q ss_pred ceeecccccceeeeEeeecC-CeEEecCCceeEEEEE--------ec--cccccceEEEEecCCCCCCCCCcccCCCcee
Q 048511 73 ANTQSTYRKEVISLASYIEG-PVLVAGSSSYQVSVES--------LL--IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSI 141 (351)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~--------~~--~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l 141 (351)
......+...+.+++|+|++ .++++++.++.+.+|. .+ .+|...|.+++|+ +++++ |
T Consensus 124 ~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~------l 191 (402)
T 2aq5_A 124 VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS------RDGAL------I 191 (402)
T ss_dssp SEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEEC------TTSSC------E
T ss_pred eEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEEC------CCCCE------E
Confidence 22334456789999999998 6899999888887765 35 6799999999999 78888 9
Q ss_pred EEeecCCeEEEEeccCCCcceEEEEEeccccccccc-eEEEEEcCCCCEEEEE---eeCCeEEEEEcccCcccCcccccc
Q 048511 142 LSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALG-FYGGHWSPDGRSILAH---GYGGAFHLWRNVGVDIDNWQPQKV 217 (351)
Q Consensus 142 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~---~~dg~i~~~d~~~~~~~~~~~~~~ 217 (351)
++++.|+.|++||++. +..+..+. ..|... +.+++|+|++++|+++ +.|+.|++||+++.. .++..
T Consensus 192 ~~~~~d~~i~iwd~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~----~~~~~ 261 (402)
T 2aq5_A 192 CTSCRDKRVRVIEPRK--GTVVAEKD----RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE----EPLSL 261 (402)
T ss_dssp EEEETTSEEEEEETTT--TEEEEEEE----CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS----SCSEE
T ss_pred EEEecCCcEEEEeCCC--Cceeeeec----cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc----CCceE
Confidence 9999999999999998 66666552 145444 8899999999999999 789999999998864 22222
Q ss_pred c-ccccccEEEEEeecCCCEEE-EEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEec
Q 048511 218 P-SGHFAAVMDISWSRSSDYLL-SVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGA 295 (351)
Q Consensus 218 ~-~~~~~~v~~v~~sp~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~ 295 (351)
. ..|...+.+++|+|++++|+ +++.|+.|++||+.+++. ....+..+. |...|.+++|+| ++.++++
T Consensus 262 ~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~------~~~~l~~~~-~~~~v~~~~~sp--~~~~~~s-- 330 (402)
T 2aq5_A 262 QELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP------FLHYLSMFS-SKESQRGMGYMP--KRGLEVN-- 330 (402)
T ss_dssp EECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT------CEEEEEEEC-CSSCCSEEEECC--GGGSCGG--
T ss_pred EeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc------ceEeecccc-cCCcccceEEec--cccccee--
Confidence 2 24677899999999999986 455799999999988761 123333333 567899999999 7887765
Q ss_pred CCCeEEEEecCch
Q 048511 296 DEKVARVFEAPLS 308 (351)
Q Consensus 296 ~dg~v~vw~~~~~ 308 (351)
.++.+++|++...
T Consensus 331 ~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 331 KCEIARFYKLHER 343 (402)
T ss_dssp GTEEEEEEEEETT
T ss_pred cceeEEEEEcCCC
Confidence 4669999998743
No 68
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.6e-34 Score=255.13 Aligned_cols=223 Identities=16% Similarity=0.168 Sum_probs=179.7
Q ss_pred EeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCce
Q 048511 23 CELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSY 102 (351)
Q Consensus 23 ~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 102 (351)
....+|...|++|+|+ | .++.+||+|+.||+|+|||+.++.....
T Consensus 113 ~~~~~~~~~V~~l~~~----P---~~~~~lasGs~dg~i~lWd~~~~~~~~~---------------------------- 157 (435)
T 4e54_B 113 QKAAPFDRRATSLAWH----P---THPSTVAVGSKGGDIMLWNFGIKDKPTF---------------------------- 157 (435)
T ss_dssp CEEEECSSCEEEEEEC----S---SCTTCEEEEETTSCEEEECSSCCSCCEE----------------------------
T ss_pred ccCCCCCCCEEEEEEe----C---CCCCEEEEEeCCCEEEEEECCCCCceeE----------------------------
Confidence 4566899999999999 2 2567999999999999999987653321
Q ss_pred eEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEE
Q 048511 103 QVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGH 182 (351)
Q Consensus 103 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 182 (351)
..+.+|.+.|++|+|+| .++++ |++|+.|++|++||++. +.. ..+. ....+...+.+++
T Consensus 158 -----~~~~gH~~~V~~l~f~p-----~~~~~------l~s~s~D~~v~iwd~~~--~~~-~~~~--~~~~~~~~~~~~~ 216 (435)
T 4e54_B 158 -----IKGIGAGGSITGLKFNP-----LNTNQ------FYASSMEGTTRLQDFKG--NIL-RVFA--SSDTINIWFCSLD 216 (435)
T ss_dssp -----ECCCSSSCCCCEEEECS-----SCTTE------EEEECSSSCEEEEETTS--CEE-EEEE--CCSSCSCCCCCEE
T ss_pred -----EEccCCCCCEEEEEEeC-----CCCCE------EEEEeCCCEEEEeeccC--Cce-eEEe--ccCCCCccEEEEE
Confidence 23468999999999996 47788 99999999999999986 332 2222 1223445678999
Q ss_pred EcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCC-EEEEEeCCCcEEEEcCCCccccccCc
Q 048511 183 WSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSD-YLLSVSHDQTTRVFAPWKNVASLMGE 261 (351)
Q Consensus 183 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~ 261 (351)
|+|++++|++|+.||.|++||++.. .+..+.+|...|++++|+|++. +|++++.|+.|+|||+++.....
T Consensus 217 ~~~~~~~l~~g~~dg~i~~wd~~~~------~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~--- 287 (435)
T 4e54_B 217 VSASSRMVVTGDNVGNVILLNMDGK------ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA--- 287 (435)
T ss_dssp EETTTTEEEEECSSSBEEEEESSSC------BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS---
T ss_pred ECCCCCEEEEEeCCCcEeeeccCcc------eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc---
Confidence 9999999999999999999999763 4677889999999999999876 68899999999999998776221
Q ss_pred cceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeec
Q 048511 262 NSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHA 316 (351)
Q Consensus 262 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~ 316 (351)
.+.....|...|++++|+| ++.+|++++.||.|+|||+. +.....+..+
T Consensus 288 ----~~~~~~~h~~~v~~~~~sp--dg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~ 337 (435)
T 4e54_B 288 ----SFLYSLPHRHPVNAACFSP--DGARLLTTDQKSEIRVYSASQWDCPLGLIPH 337 (435)
T ss_dssp ----CCSBCCBCSSCEEECCBCT--TSSEEEEEESSSCEEEEESSSSSSEEEECCC
T ss_pred ----eEEEeeeccccccceeECC--CCCeeEEEcCCCEEEEEECCCCccceEEecc
Confidence 3334457888999999999 99999999999999999987 5555554443
No 69
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-34 Score=258.53 Aligned_cols=276 Identities=13% Similarity=0.119 Sum_probs=199.2
Q ss_pred CCCCCceEEEEEccC---CCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecC---CCcccce
Q 048511 1 MGGLDNKIHLYRGQR---TGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLA---LRGSSAN 74 (351)
Q Consensus 1 tg~~dg~i~vw~~~~---~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~---~~~~~~~ 74 (351)
+|+.||+|+|||+.. ...+.....+ +|.+.|++++|+ +++++|++++.||+|++||+. .++....
T Consensus 81 s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~--------~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 151 (437)
T 3gre_A 81 TGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMI--------PNFDAFAVSSKDGQIIVLKVNHYQQESEVKF 151 (437)
T ss_dssp EEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEEC--------TTSSEEEEEETTSEEEEEEEEEEEETTEEEE
T ss_pred EecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEe--------CCCCEEEEEeCCCEEEEEEeccccCCceeec
Confidence 478999999999865 1111122233 599999999999 889999999999999999995 3332221
Q ss_pred eec---------c--cccceeeeE--eeecCCeEEecCCceeEEEEE--------eccc--cccceEEEEecCCCCCCCC
Q 048511 75 TQS---------T--YRKEVISLA--SYIEGPVLVAGSSSYQVSVES--------LLIG--HEDWVYSVQWEPPSTAPSD 131 (351)
Q Consensus 75 ~~~---------~--~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~--------~~~~--h~~~v~~l~~~p~~~~~~~ 131 (351)
... . ....+.++. +++++..+++++.++.+.++. .+.+ |...|++++|+ ++
T Consensus 152 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s------~~ 225 (437)
T 3gre_A 152 LNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICID------EE 225 (437)
T ss_dssp EEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEEC------TT
T ss_pred cccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEEC------CC
Confidence 110 0 223344444 557899999999999887765 3455 88999999999 78
Q ss_pred CcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEc----CCCCEEEEEeeCCeEEEEEcccC
Q 048511 132 GVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWS----PDGRSILAHGYGGAFHLWRNVGV 207 (351)
Q Consensus 132 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~----~~~~~l~~~~~dg~i~~~d~~~~ 207 (351)
+.+ |++|+.||.|++||++. +..+..+.. .+...|.+++|+ |++.+|++++.|+.|++||++++
T Consensus 226 ~~~------l~s~~~dg~i~iwd~~~--~~~~~~~~~----~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 293 (437)
T 3gre_A 226 CCV------LILGTTRGIIDIWDIRF--NVLIRSWSF----GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG 293 (437)
T ss_dssp SCE------EEEEETTSCEEEEETTT--TEEEEEEBC----TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT
T ss_pred CCE------EEEEcCCCeEEEEEcCC--ccEEEEEec----CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC
Confidence 888 99999999999999998 777666542 456689999665 46779999999999999999876
Q ss_pred cccC-------------cccc------ccccc--ccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCcc----
Q 048511 208 DIDN-------------WQPQ------KVPSG--HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGEN---- 262 (351)
Q Consensus 208 ~~~~-------------~~~~------~~~~~--~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---- 262 (351)
+... +.+. ..+.+ |...|++++|+ ++++|++++.|+.|++||+.+++....-..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~ 372 (437)
T 3gre_A 294 HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRF 372 (437)
T ss_dssp EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--C
T ss_pred cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEeccccc
Confidence 3100 0000 01223 77789999999 778999999999999999988763221000
Q ss_pred -----------------------ceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511 263 -----------------------SWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE 304 (351)
Q Consensus 263 -----------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~ 304 (351)
..........|...|++++|++..++.+|++|+.||.|+||+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 373 SDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred CceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 000011123488889999999922388999999999999995
No 70
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=9.8e-33 Score=245.47 Aligned_cols=260 Identities=12% Similarity=0.133 Sum_probs=206.2
Q ss_pred EEeeeecCCceeEEEeeCCcccCCCCC-ccEEEEeeCCCcEEEEecCCC---------cccceeecccccceeeeEeeec
Q 048511 22 ACELKGHTDWIRSLDFSLPVCTSGEAI-SILLVSSSQDKVIRIWKLALR---------GSSANTQSTYRKEVISLASYIE 91 (351)
Q Consensus 22 ~~~~~~h~~~V~~l~~~~~~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 91 (351)
.....+|.+.|++++|+ ++ +.+|++++.||.|++|++... .........+...+.+++|+++
T Consensus 121 ~~~~~~h~~~v~~l~~~--------p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 192 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYM--------PQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPN 192 (430)
T ss_dssp EEEEEEESSCCSEEEEE--------TTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTT
T ss_pred EEEEEcCCCcEEEEEEC--------CCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCC
Confidence 34566899999999999 65 789999999999999999862 1122223345667899999999
Q ss_pred CC-eEEecCCceeEEEEEe---------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEec
Q 048511 92 GP-VLVAGSSSYQVSVESL---------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQP 155 (351)
Q Consensus 92 ~~-~l~~~~~~~~~~~~~~---------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 155 (351)
+. .|++++.++.+.++.. +.+|...|.+++|+| .++.+ |++++.|+.|++||+
T Consensus 193 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p-----~~~~~------l~s~~~dg~i~i~d~ 261 (430)
T 2xyi_A 193 LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHL-----LHESL------FGSVADDQKLMIWDT 261 (430)
T ss_dssp STTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECS-----SCTTE------EEEEETTSEEEEEET
T ss_pred CCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeC-----CCCCE------EEEEeCCCeEEEEEC
Confidence 88 9999998888877653 347889999999995 36677 999999999999999
Q ss_pred cCCC-cceEEEEEeccccccccceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC
Q 048511 156 EKTT-GIWMNVVTVGELSHSALGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS 233 (351)
Q Consensus 156 ~~~~-~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 233 (351)
+... ......+. .|...|.+++|+|++. ++++++.||.|++||++... .++..+..|...|.+++|+|+
T Consensus 262 ~~~~~~~~~~~~~-----~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~----~~~~~~~~h~~~v~~i~~sp~ 332 (430)
T 2xyi_A 262 RNNNTSKPSHTVD-----AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK----LKLHSFESHKDEIFQVQWSPH 332 (430)
T ss_dssp TCSCSSSCSEEEE-----CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT----SCSEEEECCSSCEEEEEECSS
T ss_pred CCCCCCcceeEee-----cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC----CCeEEeecCCCCEEEEEECCC
Confidence 9731 13344443 6788999999999987 68899999999999998753 567888889999999999999
Q ss_pred CC-EEEEEeCCCcEEEEcCCCcccccc----CccceEEeccccccccceeEEEEeeeCCCc-EEEEecCCCeEEEEecCc
Q 048511 234 SD-YLLSVSHDQTTRVFAPWKNVASLM----GENSWHEVARPQVHGHDINCVTIIQGKGNH-RFVSGADEKVARVFEAPL 307 (351)
Q Consensus 234 ~~-~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~l~s~~~dg~v~vw~~~~ 307 (351)
++ +|++++.|+.|+|||+........ .......+....+|...|++++|+| ++. +|++++.||.|+||++..
T Consensus 333 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 333 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP--NEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECS--SSTTEEEEEETTSEEEEEEECH
T ss_pred CCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECC--CCCCEEEEEECCCCEEEeEccc
Confidence 85 689999999999999977321000 0000124555668888999999999 777 999999999999999986
Q ss_pred hhhh
Q 048511 308 SFLK 311 (351)
Q Consensus 308 ~~~~ 311 (351)
..+.
T Consensus 411 ~~~~ 414 (430)
T 2xyi_A 411 NVYN 414 (430)
T ss_dssp HHHC
T ss_pred cccc
Confidence 5544
No 71
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.4e-33 Score=263.05 Aligned_cols=256 Identities=17% Similarity=0.231 Sum_probs=208.1
Q ss_pred EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccc----ceeecccccceeeeEeeecCCeE
Q 048511 20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSS----ANTQSTYRKEVISLASYIEGPVL 95 (351)
Q Consensus 20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l 95 (351)
.....+++|.+.|++|+|+ + .++++|+||+.|++|++|++...... ......+...+.+++++++++++
T Consensus 373 ~~~~~l~~H~~~V~~v~~~----~---~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l 445 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATP----I---DNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFA 445 (694)
T ss_dssp EEEEEEECCSSCEEEEECC----T---TCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred chhhhcccCCceeEEEEec----C---CCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEE
Confidence 4456789999999999999 2 24579999999999999999865432 22344567788999999999999
Q ss_pred EecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEE
Q 048511 96 VAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVT 167 (351)
Q Consensus 96 ~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 167 (351)
++++.++.+++|. .+.+|...|.+++|+ +++++ |++++.|++|++||+.. .. ...+.
T Consensus 446 ~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s------~~~~~------l~s~s~D~~i~iwd~~~--~~-~~~~~ 510 (694)
T 3dm0_A 446 LSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFS------LDNRQ------IVSASRDRTIKLWNTLG--EC-KYTIS 510 (694)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC------TTSSC------EEEEETTSCEEEECTTS--CE-EEEEC
T ss_pred EEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEe------CCCCE------EEEEeCCCEEEEEECCC--Cc-ceeec
Confidence 9999999998775 467899999999999 78888 99999999999999865 22 22221
Q ss_pred eccccccccceEEEEEcCCC--CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCc
Q 048511 168 VGELSHSALGFYGGHWSPDG--RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQT 245 (351)
Q Consensus 168 ~~~~~~~~~~i~~i~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~ 245 (351)
.....|...|.+++|+|++ ..+++++.|+.|++||+++. ++...+.+|...|++++|+|++++|++++.|+.
T Consensus 511 -~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~-----~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~ 584 (694)
T 3dm0_A 511 -EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC-----KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV 584 (694)
T ss_dssp -SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC-----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSB
T ss_pred -cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC-----cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe
Confidence 1234678889999999987 58999999999999999886 557788899999999999999999999999999
Q ss_pred EEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511 246 TRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT 317 (351)
Q Consensus 246 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~ 317 (351)
|++||+++++ .+..+. +...|.+++|+| ++.+|++++ |+.|+|||+. +..+..+..+.
T Consensus 585 i~iwd~~~~~----------~~~~~~-~~~~v~~~~~sp--~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~ 643 (694)
T 3dm0_A 585 VLLWDLAEGK----------KLYSLE-ANSVIHALCFSP--NRYWLCAAT-EHGIKIWDLESKSIVEDLKVDL 643 (694)
T ss_dssp CEEEETTTTE----------EEECCB-CSSCEEEEEECS--SSSEEEEEE-TTEEEEEETTTTEEEEEECCCC
T ss_pred EEEEECCCCc----------eEEEec-CCCcEEEEEEcC--CCcEEEEEc-CCCEEEEECCCCCChhhhcccc
Confidence 9999998876 444443 345699999999 787777665 5569999987 66666665433
No 72
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.3e-33 Score=248.83 Aligned_cols=268 Identities=10% Similarity=0.184 Sum_probs=203.3
Q ss_pred CCCCCceEEEEEccCCCc---------eEEEEeeeecC------------CceeEEEeeCCcccCCCCCc--cEEEEeeC
Q 048511 1 MGGLDNKIHLYRGQRTGK---------FVRACELKGHT------------DWIRSLDFSLPVCTSGEAIS--ILLVSSSQ 57 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~---------~~~~~~~~~h~------------~~V~~l~~~~~~~~~~~~~~--~~l~t~~~ 57 (351)
+|+.||.|+||++.. ++ +.....+.+|. +.|++++|+ +++ .+|++++.
T Consensus 45 ~g~~dg~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~--------~~~~~~~l~s~s~ 115 (447)
T 3dw8_B 45 TGDKGGRVVIFQQEQ-ENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL--------PQKNAAQFLLSTN 115 (447)
T ss_dssp EEETTSEEEEEEECC------CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC--------CCCSSSEEEEEEC
T ss_pred EEcCCCeEEEEEecC-CCCCCcccccceeEecccccccccccccccccccCceEEEEEc--------CCCCcceEEEeCC
Confidence 478899999999986 32 34577889998 889999999 666 79999999
Q ss_pred CCcEEEEecCCCcccc---------------------------------------eeecccccceeeeEeeecCCeEEec
Q 048511 58 DKVIRIWKLALRGSSA---------------------------------------NTQSTYRKEVISLASYIEGPVLVAG 98 (351)
Q Consensus 58 dg~i~iwd~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~ 98 (351)
|++|++||+.+..... .....+...+.+++|++++..++++
T Consensus 116 d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 195 (447)
T 3dw8_B 116 DKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA 195 (447)
T ss_dssp SSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE
T ss_pred CCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe
Confidence 9999999997643210 1123456778899999999999998
Q ss_pred CCceeEEEEEe----------------ccccccceEEEEecCCCCCCCCC-cccCCCceeEEeecCCeEEEEeccCCCcc
Q 048511 99 SSSYQVSVESL----------------LIGHEDWVYSVQWEPPSTAPSDG-VSCQQPSSILSASMDKTMMIWQPEKTTGI 161 (351)
Q Consensus 99 ~~~~~~~~~~~----------------~~~h~~~v~~l~~~p~~~~~~~~-~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 161 (351)
.++.+.+|.. +.+|...|.+++|+ +++ ++ |++|+.|+.|++||++. +.
T Consensus 196 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------p~~~~~------l~s~~~dg~i~iwd~~~--~~ 260 (447)
T 3dw8_B 196 -DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFH------PNSCNT------FVYSSSKGTIRLCDMRA--SA 260 (447)
T ss_dssp -CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEEC------SSCTTE------EEEEETTSCEEEEETTT--CS
T ss_pred -CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEEC------CCCCcE------EEEEeCCCeEEEEECcC--Cc
Confidence 6888876642 45789999999999 676 78 99999999999999998 44
Q ss_pred e----EEEEEecccccccc------------ceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccccccc-
Q 048511 162 W----MNVVTVGELSHSAL------------GFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAA- 224 (351)
Q Consensus 162 ~----~~~~~~~~~~~~~~------------~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~- 224 (351)
. ...+. .+.. .|.+++|+|++++|++++. +.|++||++... .++..+.+|...
T Consensus 261 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~----~~~~~~~~~~~~~ 330 (447)
T 3dw8_B 261 LCDRHSKLFE-----EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN----RPVETYQVHEYLR 330 (447)
T ss_dssp SSCTTCEEEC-----CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS----SCSCCEESCGGGT
T ss_pred cccceeeEec-----cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc----cccceeecccccc
Confidence 3 34443 3443 8999999999999999998 999999998722 567777777532
Q ss_pred --------------EEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccC-cc------ceE---------------Eec
Q 048511 225 --------------VMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMG-EN------SWH---------------EVA 268 (351)
Q Consensus 225 --------------v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~------~~~---------------~~~ 268 (351)
+..++|+|++++|++++.||.|++||+.+++..... .. ... ...
T Consensus 331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (447)
T 3dw8_B 331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISV 410 (447)
T ss_dssp TTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEG
T ss_pred ccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccc
Confidence 334999999999999999999999999887621100 00 000 000
Q ss_pred cccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511 269 RPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA 305 (351)
Q Consensus 269 ~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~ 305 (351)
....+...|..++|+| ++.+||+++.++ +++|..
T Consensus 411 ~~~~~~~~i~~~~~~p--~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 411 DSLDFNKKILHTAWHP--KENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp GGCCTTSCCCEEEECS--SSSEEEEECSSC-EEEEEC
T ss_pred cccccCCceeEEEECC--CCCEEEEEecce-eeeecc
Confidence 0112345689999999 899999998886 677764
No 73
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.6e-33 Score=244.55 Aligned_cols=260 Identities=10% Similarity=0.107 Sum_probs=204.8
Q ss_pred eEEEEeeeecCCceeEEEeeCCcccCCCCCc-cEEEEeeCCCcEEEEecCCCcccceeec-ccccceeeeEeee-cCCeE
Q 048511 19 FVRACELKGHTDWIRSLDFSLPVCTSGEAIS-ILLVSSSQDKVIRIWKLALRGSSANTQS-TYRKEVISLASYI-EGPVL 95 (351)
Q Consensus 19 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~l 95 (351)
+.....+.+|.+.|++++|+ +++ ++|++|+.||.|++||+.++........ .+...+.++.|+| ++..+
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~--------~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 134 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWH--------PTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQL 134 (383)
T ss_dssp CEEEEEECCCSSCEEEEEEC--------SSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEE
T ss_pred cceEEeccCCCCCEEEEEEC--------CCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEE
Confidence 35677889999999999999 777 8999999999999999998776655442 4677899999999 78999
Q ss_pred EecCCceeEEEEEe-------c---cccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEE
Q 048511 96 VAGSSSYQVSVESL-------L---IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNV 165 (351)
Q Consensus 96 ~~~~~~~~~~~~~~-------~---~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 165 (351)
++++.++.+.++.. + .+|...|.+++|+ +++++ |++++.|+.|++||++ +..+..
T Consensus 135 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~------l~~~~~d~~i~i~d~~---~~~~~~ 199 (383)
T 3ei3_B 135 FVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVS------VSRQM------LATGDSTGRLLLLGLD---GHEIFK 199 (383)
T ss_dssp EEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEE------TTTTE------EEEEETTSEEEEEETT---SCEEEE
T ss_pred EEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEEC------CCCCE------EEEECCCCCEEEEECC---CCEEEE
Confidence 99999988877653 2 3345789999999 78888 9999999999999994 555555
Q ss_pred EEeccccccccceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec-CCCEEEEEeCC
Q 048511 166 VTVGELSHSALGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR-SSDYLLSVSHD 243 (351)
Q Consensus 166 ~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~s~~~d 243 (351)
+. .|...|.+++|+|+++ ++++++.|+.|++||+++.+.. ..++..+ +|...|.+++|+| ++++|++++.|
T Consensus 200 ~~-----~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d 272 (383)
T 3ei3_B 200 EK-----LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK-NSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQR 272 (383)
T ss_dssp EE-----CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST-TCEEEEE-ECSSCEEEEEECTTTSCEEEEEESS
T ss_pred ec-----cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc-cceEEEe-cCCCceEEEEEcCCCCCEEEEEcCC
Confidence 55 7888999999999999 9999999999999999874311 0234444 6899999999999 99999999999
Q ss_pred CcEEEEcCCCccccccCccceEEe-ccccccc----------cceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhh
Q 048511 244 QTTRVFAPWKNVASLMGENSWHEV-ARPQVHG----------HDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLK 311 (351)
Q Consensus 244 g~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~----------~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~ 311 (351)
+.|++||+++..... .+... .....|. ..+..++|+| ++.+ +++.|+.|++||+. ++.+.
T Consensus 273 ~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~--dg~~--s~s~d~~i~iwd~~~~~~~~ 344 (383)
T 3ei3_B 273 NEIRVYSSYDWSKPD----QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYP--DDQL--LLNDKRTIDIYDANSGGLVH 344 (383)
T ss_dssp SEEEEEETTBTTSCS----EEEECCBCCCTTSCCCCCEECSSSSEEEEECBC--CTTT--CTTCCCCEEEEETTTCCEEE
T ss_pred CcEEEEECCCCcccc----ccccccccccccccceEEeccCCCCceEEEecC--Cccc--ccCCCCeEEEEecCCCceee
Confidence 999999998876321 11100 0011122 2344567777 6666 88899999999986 77777
Q ss_pred ceeec
Q 048511 312 TLNHA 316 (351)
Q Consensus 312 ~~~~~ 316 (351)
.+..+
T Consensus 345 ~l~~~ 349 (383)
T 3ei3_B 345 QLRDP 349 (383)
T ss_dssp EECBT
T ss_pred eecCC
Confidence 77653
No 74
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.2e-34 Score=248.80 Aligned_cols=245 Identities=12% Similarity=0.058 Sum_probs=196.9
Q ss_pred eeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCc-ccceeecccccceeeeEeeecCCeEEecCCcee
Q 048511 25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRG-SSANTQSTYRKEVISLASYIEGPVLVAGSSSYQ 103 (351)
Q Consensus 25 ~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 103 (351)
+..|.++|++++|+ +++++|++++.|+.|++||+.++. ........+...+.+++|++++++|++++.++.
T Consensus 7 ~~~~~~~v~~~~~s--------~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~ 78 (377)
T 3dwl_C 7 LHILPKPSYEHAFN--------SQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRN 78 (377)
T ss_dssp EEECSSCCSCCEEC--------SSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSS
T ss_pred EecCCCcEEEEEEC--------CCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCe
Confidence 44577899999999 889999999999999999999763 222333455678999999999999999998888
Q ss_pred EEEEE-----------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcc---eEEEEEec
Q 048511 104 VSVES-----------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGI---WMNVVTVG 169 (351)
Q Consensus 104 ~~~~~-----------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~ 169 (351)
+.+|. .+.+|...|.+++|+ +++++ |++++.|+.|++||++. +. ....+.
T Consensus 79 v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~------l~~~~~d~~i~iwd~~~--~~~~~~~~~~~-- 142 (377)
T 3dwl_C 79 AYVYEKRPDGTWKQTLVLLRLNRAATFVRWS------PNEDK------FAVGSGARVISVCYFEQ--ENDWWVSKHLK-- 142 (377)
T ss_dssp EEEC------CCCCEEECCCCSSCEEEEECC------TTSSC------CEEEESSSCEEECCC-------CCCCEEEC--
T ss_pred EEEEEcCCCCceeeeeEecccCCceEEEEEC------CCCCE------EEEEecCCeEEEEEECC--cccceeeeEee--
Confidence 76653 355789999999999 78888 99999999999999998 43 233333
Q ss_pred cccc-cccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc-------------CcccccccccccccEEEEEeecCCC
Q 048511 170 ELSH-SALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID-------------NWQPQKVPSGHFAAVMDISWSRSSD 235 (351)
Q Consensus 170 ~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-------------~~~~~~~~~~~~~~v~~v~~sp~~~ 235 (351)
. |...|.+++|+|++++|++++.|+.|++||++..... ...++..+ +|...|.+++|+|+++
T Consensus 143 ---~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~ 218 (377)
T 3dwl_C 143 ---RPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN 218 (377)
T ss_dssp ---SSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS
T ss_pred ---cccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC
Confidence 4 8889999999999999999999999999999633210 01345555 8999999999999999
Q ss_pred EEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 236 YLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 236 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
+|++++.|+.|++||+.++.. ....+..+..|...|++++|+| ++.+|++|++|+.+ +|+..
T Consensus 219 ~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 219 ALAYAGHDSSVTIAYPSAPEQ------PPRALITVKLSQLPLRSLLWAN--ESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp CEEEEETTTEEC-CEECSTTS------CEEECCCEECSSSCEEEEEEEE--TTEEEEEESSSSEE-EECCC
T ss_pred EEEEEeCCCcEEEEECCCCCC------cceeeEeecCCCCceEEEEEcC--CCCEEEEEcCCcEE-EEEeC
Confidence 999999999999999998862 1223666778999999999999 89999999888777 66544
No 75
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-33 Score=269.15 Aligned_cols=170 Identities=9% Similarity=0.052 Sum_probs=131.0
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEecc----ccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc------
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGE----LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID------ 210 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~------ 210 (351)
|++|+.|++|++||+..........+.... ...|...|.+++|+|++++||+|+.||+|+|||+.+++..
T Consensus 450 laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~ 529 (902)
T 2oaj_A 450 FITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRP 529 (902)
T ss_dssp EEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-------
T ss_pred EEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccC
Confidence 999999999999999873211001111100 0167789999999999999999999999999999865210
Q ss_pred ----------------------------------CcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccc
Q 048511 211 ----------------------------------NWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVA 256 (351)
Q Consensus 211 ----------------------------------~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~ 256 (351)
.++++..+.+|.+.|++|+|+|+| +||+|+.|++|+|||++....
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~ 608 (902)
T 2oaj_A 530 ESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAI 608 (902)
T ss_dssp --------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEE
T ss_pred CCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeE
Confidence 012456778899999999999999 999999999999999877651
Q ss_pred cccCccceEEecccc-ccccceeEEEEe-----eeCC---CcEEEEecCCCeEEEEec----Cchhhhceeeccc
Q 048511 257 SLMGENSWHEVARPQ-VHGHDINCVTII-----QGKG---NHRFVSGADEKVARVFEA----PLSFLKTLNHATF 318 (351)
Q Consensus 257 ~~~~~~~~~~~~~~~-~~~~~i~~~~~~-----~~~~---~~~l~s~~~dg~v~vw~~----~~~~~~~~~~~~~ 318 (351)
.. -..+..+. +|...|++++|+ | | +.+|++|+.|++|++||+ .|++...|.++..
T Consensus 609 ~~-----~~~~~~~~~gh~~~V~sv~Fs~~~~~~--Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~ 676 (902)
T 2oaj_A 609 IY-----MENIREISGAQSACVTCIEFVIMEYGD--DGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITN 676 (902)
T ss_dssp EE-----EEEGGGTCSSCCCCEEEEEEEEEECTT--SSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEE
T ss_pred EE-----EeehhHhccccccceEEEEEEEEecCC--CCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCcee
Confidence 00 01223454 888999999999 7 6 489999999999999998 3777788877763
No 76
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=7.5e-33 Score=247.29 Aligned_cols=254 Identities=15% Similarity=0.172 Sum_probs=194.8
Q ss_pred ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc----------cceeecccc------------ccee
Q 048511 27 GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS----------SANTQSTYR------------KEVI 84 (351)
Q Consensus 27 ~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~----------~~~~~~~~~------------~~~~ 84 (351)
.|.+.|++++|+ +++++||+|+.||.|++||+.++.. .......+. ..+.
T Consensus 26 ~~~~~V~~v~~s--------~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~ 97 (447)
T 3dw8_B 26 AEADIISTVEFN--------HSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKIN 97 (447)
T ss_dssp CGGGSEEEEEEC--------SSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCC
T ss_pred cccCcEEEEEEC--------CCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceE
Confidence 367899999999 8899999999999999999987652 112222333 5688
Q ss_pred eeEeeecC--CeEEecCCceeEEEEEe------------------------------------------------ccccc
Q 048511 85 SLASYIEG--PVLVAGSSSYQVSVESL------------------------------------------------LIGHE 114 (351)
Q Consensus 85 ~~~~~~~~--~~l~~~~~~~~~~~~~~------------------------------------------------~~~h~ 114 (351)
++.|++++ ..+++++.++.+++|.. ..+|.
T Consensus 98 ~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 177 (447)
T 3dw8_B 98 KIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHT 177 (447)
T ss_dssp EEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCS
T ss_pred EEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCC
Confidence 99999998 78999988888877653 35799
Q ss_pred cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEE--eccccccccceEEEEEcCCC-CEEE
Q 048511 115 DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVT--VGELSHSALGFYGGHWSPDG-RSIL 191 (351)
Q Consensus 115 ~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~i~~i~~~~~~-~~l~ 191 (351)
..|.+++|+ +++++ |++| .|+.|++||++.. +.....+. ......|...|.+++|+|++ ++|+
T Consensus 178 ~~v~~~~~~------~~~~~------l~s~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 243 (447)
T 3dw8_B 178 YHINSISIN------SDYET------YLSA-DDLRINLWHLEIT-DRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFV 243 (447)
T ss_dssp SCCCEEEEC------TTSSE------EEEE-CSSEEEEEETTEE-EEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEE
T ss_pred cceEEEEEc------CCCCE------EEEe-CCCeEEEEECCCC-CceeeeeecccccccccCcceEEEEECCCCCcEEE
Confidence 999999999 78888 9998 7999999999841 33333221 11245788899999999998 9999
Q ss_pred EEeeCCeEEEEEcccCcccCcccccccccccc------------cEEEEEeecCCCEEEEEeCCCcEEEEcCCC-ccccc
Q 048511 192 AHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFA------------AVMDISWSRSSDYLLSVSHDQTTRVFAPWK-NVASL 258 (351)
Q Consensus 192 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~------------~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~-~~~~~ 258 (351)
+++.||.|++||+++++.. ......+..|.. .|.+++|+|++++|++++. +.|++||++. +.
T Consensus 244 s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~--- 318 (447)
T 3dw8_B 244 YSSSKGTIRLCDMRASALC-DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENR--- 318 (447)
T ss_dssp EEETTSCEEEEETTTCSSS-CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSS---
T ss_pred EEeCCCeEEEEECcCCccc-cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcc---
Confidence 9999999999999886410 011456666665 8999999999999999998 9999999987 44
Q ss_pred cCccceEEeccccccccc---------------eeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhceeec
Q 048511 259 MGENSWHEVARPQVHGHD---------------INCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLNHA 316 (351)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~---------------i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~ 316 (351)
.+..+..|... +..++|+| ++.+|++|+.||.|++||+.......+..+
T Consensus 319 -------~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 382 (447)
T 3dw8_B 319 -------PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNG--SDSVVMTGSYNNFFRMFDRNTKRDITLEAS 382 (447)
T ss_dssp -------CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECT--TSSEEEEECSTTEEEEEETTTCCEEEEECC
T ss_pred -------ccceeeccccccccccccccccccccceEEEECC--CCCEEEEeccCCEEEEEEcCCCcceeeeec
Confidence 34444455431 33489999 899999999999999999884433344433
No 77
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=7.1e-33 Score=246.80 Aligned_cols=256 Identities=18% Similarity=0.243 Sum_probs=208.1
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.||+|++||+.+ + .....+.+|.+.|++++|. +++|++|+.||+|++||+.+++...... .+.
T Consensus 148 ~g~~dg~i~iwd~~~-~--~~~~~~~~h~~~v~~l~~~----------~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~ 213 (435)
T 1p22_A 148 SGLRDNTIKIWDKNT-L--ECKRILTGHTGSVLCLQYD----------ERVIITGSSDSTVRVWDVNTGEMLNTLI-HHC 213 (435)
T ss_dssp EEESSSCEEEEESSS-C--CEEEEECCCSSCEEEEECC----------SSEEEEEETTSCEEEEESSSCCEEEEEC-CCC
T ss_pred EEeCCCeEEEEeCCC-C--eEEEEEcCCCCcEEEEEEC----------CCEEEEEcCCCeEEEEECCCCcEEEEEc-CCC
Confidence 478899999999988 6 4567889999999999987 6799999999999999999887655443 445
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEE-----------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCe
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVES-----------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT 149 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~ 149 (351)
..+.++.++ +..+++++.++.+.++. .+.+|...|.+++|. +++ |++|+.|+.
T Consensus 214 ~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~------l~s~~~dg~ 277 (435)
T 1p22_A 214 EAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--------DKY------IVSASGDRT 277 (435)
T ss_dssp SCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--------TTE------EEEEETTSE
T ss_pred CcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--------CCE------EEEEeCCCe
Confidence 677788875 56888888888887664 456788999999986 346 999999999
Q ss_pred EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEE
Q 048511 150 MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDIS 229 (351)
Q Consensus 150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~ 229 (351)
|++||+++ +..+..+. .|...|.++.| ++.++++++.||.|++||++++ .++..+.+|...|.+++
T Consensus 278 i~vwd~~~--~~~~~~~~-----~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~~~ 343 (435)
T 1p22_A 278 IKVWNTST--CEFVRTLN-----GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG-----ACLRVLEGHEELVRCIR 343 (435)
T ss_dssp EEEEETTT--CCEEEEEE-----CCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC-----CEEEEECCCSSCEEEEE
T ss_pred EEEEECCc--CcEEEEEc-----CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC-----CEEEEEeCCcCcEEEEE
Confidence 99999998 77777766 78889999998 4689999999999999999987 56788889999999999
Q ss_pred eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511 230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 230 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 307 (351)
| ++.+|++|+.||.|++||+........ ......+..+..|...|++++| ++.+|++|+.||.|++||+..
T Consensus 344 ~--~~~~l~sg~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 344 F--DNKRIVSGAYDGKIKVWDLVAALDPRA-PAGTLCLRTLVEHSGRVFRLQF----DEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp C--CSSEEEEEETTSCEEEEEHHHHTSTTS-CTTTTEEEEECCCSSCCCCEEE----CSSCEEECCSSSEEEEEC---
T ss_pred e--cCCEEEEEeCCCcEEEEECCCCCCccc-cccchheeeccCCCCCeEEEEe----CCCEEEEEeCCCEEEEEECCC
Confidence 9 688999999999999999866541110 0001134455688899999999 367899999999999999873
No 78
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.9e-32 Score=238.70 Aligned_cols=246 Identities=13% Similarity=0.092 Sum_probs=202.9
Q ss_pred eeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCc--ccceeecccccceeeeEeeecCCeEEecCCce
Q 048511 25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRG--SSANTQSTYRKEVISLASYIEGPVLVAGSSSY 102 (351)
Q Consensus 25 ~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 102 (351)
+..|.++|++++|+ +++++|++++.|+.|++||+.+++ .... ...+...+.+++|++++..+++++.++
T Consensus 4 ~~~~~~~i~~~~~s--------~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~~dg 74 (372)
T 1k8k_C 4 HSFLVEPISCHAWN--------KDRTQIAICPNNHEVHIYEKSGNKWVQVHE-LKEHNGQVTGVDWAPDSNRIVTCGTDR 74 (372)
T ss_dssp EESCSSCCCEEEEC--------TTSSEEEEECSSSEEEEEEEETTEEEEEEE-EECCSSCEEEEEEETTTTEEEEEETTS
T ss_pred ecccCCCeEEEEEC--------CCCCEEEEEeCCCEEEEEeCCCCcEEeeee-ecCCCCcccEEEEeCCCCEEEEEcCCC
Confidence 44589999999999 889999999999999999998875 3333 334567899999999999999999988
Q ss_pred eEEEEEe----------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccc
Q 048511 103 QVSVESL----------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELS 172 (351)
Q Consensus 103 ~~~~~~~----------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 172 (351)
.+.++.. +..|...|.+++|+ +++++ |++++.|+.|++||++........... ..
T Consensus 75 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~------l~~~~~d~~v~i~d~~~~~~~~~~~~~---~~ 139 (372)
T 1k8k_C 75 NAYVWTLKGRTWKPTLVILRINRAARCVRWA------PNEKK------FAVGSGSRVISICYFEQENDWWVCKHI---KK 139 (372)
T ss_dssp CEEEEEEETTEEEEEEECCCCSSCEEEEEEC------TTSSE------EEEEETTSSEEEEEEETTTTEEEEEEE---CT
T ss_pred eEEEEECCCCeeeeeEEeecCCCceeEEEEC------CCCCE------EEEEeCCCEEEEEEecCCCcceeeeee---ec
Confidence 8877653 35688899999999 78888 999999999999999983321111111 23
Q ss_pred ccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCc-------------ccCcccccccccccccEEEEEeecCCCEEEE
Q 048511 173 HSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVD-------------IDNWQPQKVPSGHFAAVMDISWSRSSDYLLS 239 (351)
Q Consensus 173 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~-------------~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s 239 (351)
.|...|.+++|+|++++|++++.|+.|++||++... .....++..+..|...|.+++|+|++++|++
T Consensus 140 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 219 (372)
T 1k8k_C 140 PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW 219 (372)
T ss_dssp TCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE
T ss_pred ccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEE
Confidence 577899999999999999999999999999975211 0012456677789999999999999999999
Q ss_pred EeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511 240 VSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 240 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 307 (351)
++.|+.|++||+++++ .+..+..|...|++++|+| ++.+|++| .|+.|++|++..
T Consensus 220 ~~~d~~i~i~d~~~~~----------~~~~~~~~~~~v~~~~~~~--~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 220 VSHDSTVCLADADKKM----------AVATLASETLPLLAVTFIT--ESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EETTTEEEEEEGGGTT----------EEEEEECSSCCEEEEEEEE--TTEEEEEE-TTSSCEEEEEET
T ss_pred EeCCCEEEEEECCCCc----------eeEEEccCCCCeEEEEEec--CCCEEEEE-eCCeEEEEEccC
Confidence 9999999999998876 5555667888899999999 88888887 999999999865
No 79
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.7e-32 Score=254.61 Aligned_cols=265 Identities=14% Similarity=0.124 Sum_probs=205.9
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCC---ceeEEEeeCCcccCCCCC-ccEEEEeeCCCcEEEEecCCCcccceee
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTD---WIRSLDFSLPVCTSGEAI-SILLVSSSQDKVIRIWKLALRGSSANTQ 76 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~---~V~~l~~~~~~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~ 76 (351)
+|+.||.|++||..+ + ..+..+.+|.. .|++++|+ ++ +++|++++.|+.|++||+.+++......
T Consensus 178 ~~~~d~~v~vwd~~~-~--~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 246 (615)
T 1pgu_A 178 TVGDDGSVVFYQGPP-F--KFSASDRTHHKQGSFVRDVEFS--------PDSGEFVITVGSDRKISCFDGKSGEFLKYIE 246 (615)
T ss_dssp EEETTTEEEEEETTT-B--EEEEEECSSSCTTCCEEEEEEC--------STTCCEEEEEETTCCEEEEETTTCCEEEECC
T ss_pred EEeCCCcEEEEeCCC-c--ceeeeecccCCCCceEEEEEEC--------CCCCCEEEEEeCCCeEEEEECCCCCEeEEec
Confidence 467899999999987 6 56778899999 99999999 88 9999999999999999999887766663
Q ss_pred c---ccccceeeeEeeecCCeEEecCCceeEEEEE---------------------------------------------
Q 048511 77 S---TYRKEVISLASYIEGPVLVAGSSSYQVSVES--------------------------------------------- 108 (351)
Q Consensus 77 ~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------------------------------------------- 108 (351)
. .+...+.++.|+ ++..+++++.++.+.++.
T Consensus 247 ~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d 325 (615)
T 1pgu_A 247 DDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 325 (615)
T ss_dssp BTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred ccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEE
Confidence 3 566778888888 888888876655543322
Q ss_pred --------eccccccceEEEEecCCCCC----------------------------CCCCcccCCCceeEEeecCCeEEE
Q 048511 109 --------LLIGHEDWVYSVQWEPPSTA----------------------------PSDGVSCQQPSSILSASMDKTMMI 152 (351)
Q Consensus 109 --------~~~~h~~~v~~l~~~p~~~~----------------------------~~~~~~~~~~~~l~s~~~d~~i~i 152 (351)
.+.+|...|.+++| |. .. .+++.. |++++.|+.|++
T Consensus 326 ~~~~~~~~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~------l~~~~~d~~i~~ 397 (615)
T 1pgu_A 326 LGHDEVLKTISGHNKGITALTV-NP-LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQE------YSSISWDDTLKV 397 (615)
T ss_dssp TTEEEEEEEECCCSSCEEEEET-TT-TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTC------CEEEETTTEEEE
T ss_pred CCCCcEEEEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcE------EEEEeCCCCEEE
Confidence 23345555555555 32 00 011233 666666666666
Q ss_pred EeccCCC------------------------------------------------------------------------c
Q 048511 153 WQPEKTT------------------------------------------------------------------------G 160 (351)
Q Consensus 153 wd~~~~~------------------------------------------------------------------------~ 160 (351)
||+...+ +
T Consensus 398 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~ 477 (615)
T 1pgu_A 398 NGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL 477 (615)
T ss_dssp TTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEE
T ss_pred EEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCc
Confidence 6654210 1
Q ss_pred ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc-ccccEEEEEeec-------
Q 048511 161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG-HFAAVMDISWSR------- 232 (351)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp------- 232 (351)
.... .....|...|.+++|+|++++|++++.|+.|++||+.++ +++..+.+ |...|++++|+|
T Consensus 478 ~~~~----~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~-----~~~~~~~~~h~~~v~~~~~sp~~~~~~~ 548 (615)
T 1pgu_A 478 EVSF----DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR-----EVKTSRWAFRTSKINAISWKPAEKGANE 548 (615)
T ss_dssp EEEE----ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-----EEEECCSCCCSSCEEEEEECCCC-----
T ss_pred cccc----cccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC-----cceeEeecCCCCceeEEEEcCccccccc
Confidence 1110 234467889999999999999999999999999999887 45677777 999999999999
Q ss_pred ---CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 233 ---SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 233 ---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
++++|++++.|+.|++||+.++. ..+..+.+|...|++++|+| ++. |++++.||.|++|+++
T Consensus 549 ~~~~~~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~h~~~v~~l~~s~--~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 549 EEIEEDLVATGSLDTNIFIYSVKRPM---------KIIKALNAHKDGVNNLLWET--PST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp -CCSCCEEEEEETTSCEEEEESSCTT---------CCEEETTSSTTCEEEEEEEE--TTE-EEEEETTSCEEEEEEC
T ss_pred cccCCCEEEEEcCCCcEEEEECCCCc---------eechhhhcCccceEEEEEcC--CCC-eEEecCCceEEEEeee
Confidence 99999999999999999998873 14556778999999999999 888 9999999999999976
No 80
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.9e-32 Score=243.56 Aligned_cols=257 Identities=18% Similarity=0.339 Sum_probs=212.4
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.||+|++||+.+ + ..+..+.+|.+.|++++|+ +++|++++.||+|++||+.+++...... .+.
T Consensus 134 sg~~dg~i~vwd~~~-~--~~~~~~~~h~~~v~~~~~~----------~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~h~ 199 (445)
T 2ovr_B 134 SGSDDNTLKVWSAVT-G--KCLRTLVGHTGGVWSSQMR----------DNIIISGSTDRTLKVWNAETGECIHTLY-GHT 199 (445)
T ss_dssp EEETTSCEEEEETTT-C--CEEEECCCCSSCEEEEEEE----------TTEEEEEETTSCEEEEETTTTEEEEEEC-CCS
T ss_pred EEECCCcEEEEECCC-C--cEEEEEcCCCCCEEEEEec----------CCEEEEEeCCCeEEEEECCcCcEEEEEC-CCC
Confidence 478899999999998 6 4567889999999999998 5699999999999999999886654443 445
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI 152 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i 152 (351)
..+.++.+ ++..+++++.++.+.++. .+.+|...|.++.|. +.. +++++.|+.|++
T Consensus 200 ~~v~~~~~--~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~--------~~~------l~~~~~dg~i~i 263 (445)
T 2ovr_B 200 STVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--------GRR------VVSGAYDFMVKV 263 (445)
T ss_dssp SCEEEEEE--ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC--------SSC------EEEEETTSCEEE
T ss_pred CcEEEEEe--cCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEEC--------CCE------EEEEcCCCEEEE
Confidence 56777777 467899999888887665 456789999999985 456 999999999999
Q ss_pred EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511 153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR 232 (351)
Q Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 232 (351)
||+++ +..+..+. .|...|.+++| ++.++++++.|+.|++||++++ +++..+.+|...+.++.++
T Consensus 264 wd~~~--~~~~~~~~-----~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~v~~~~~~- 328 (445)
T 2ovr_B 264 WDPET--ETCLHTLQ-----GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG-----NCIHTLTGHQSLTSGMELK- 328 (445)
T ss_dssp EEGGG--TEEEEEEC-----CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC-----CEEEEECCCCSCEEEEEEE-
T ss_pred EECCC--CcEeEEec-----CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC-----CEEEEEcCCcccEEEEEEe-
Confidence 99998 77666665 78889999999 7899999999999999999887 5677888899999888774
Q ss_pred CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhh
Q 048511 233 SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLK 311 (351)
Q Consensus 233 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~ 311 (351)
+++|++++.||.|++||+++++ ....+.....|...|++++|+ +.+|++|+.||.|++||+. ++.+.
T Consensus 329 -~~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~v~iwd~~~~~~~~ 396 (445)
T 2ovr_B 329 -DNILVSGNADSTVKIWDIKTGQ-------CLQTLQGPNKHQSAVTCLQFN----KNFVITSSDDGTVKLWDLKTGEFIR 396 (445)
T ss_dssp -TTEEEEEETTSCEEEEETTTCC-------EEEEECSTTSCSSCEEEEEEC----SSEEEEEETTSEEEEEETTTCCEEE
T ss_pred -CCEEEEEeCCCeEEEEECCCCc-------EEEEEccCCCCCCCEEEEEEC----CCEEEEEeCCCeEEEEECCCCceee
Confidence 6799999999999999998876 222333333488889999984 5799999999999999987 66666
Q ss_pred cee
Q 048511 312 TLN 314 (351)
Q Consensus 312 ~~~ 314 (351)
.+.
T Consensus 397 ~~~ 399 (445)
T 2ovr_B 397 NLV 399 (445)
T ss_dssp EEE
T ss_pred eee
Confidence 663
No 81
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.5e-32 Score=274.39 Aligned_cols=274 Identities=18% Similarity=0.233 Sum_probs=223.2
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.||+|++||+.+ + ..+..+.+|.+.|++++|+ +++++|++++.|++|++||+.+++...... .+.
T Consensus 632 s~~~d~~i~vw~~~~-~--~~~~~~~~h~~~v~~~~~s--------~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~ 699 (1249)
T 3sfz_A 632 SCGADKTLQVFKAET-G--EKLLDIKAHEDEVLCCAFS--------SDDSYIATCSADKKVKIWDSATGKLVHTYD-EHS 699 (1249)
T ss_dssp EEETTSCEEEEETTT-C--CEEEEECCCSSCEEEEEEC--------TTSSEEEEEETTSEEEEEETTTCCEEEEEE-CCS
T ss_pred EEeCCCeEEEEECCC-C--CEEEEeccCCCCEEEEEEe--------cCCCEEEEEeCCCeEEEEECCCCceEEEEc-CCC
Confidence 478899999999998 6 4567888999999999999 889999999999999999999887665443 456
Q ss_pred cceeeeEeee--cCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeE
Q 048511 81 KEVISLASYI--EGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTM 150 (351)
Q Consensus 81 ~~~~~~~~~~--~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i 150 (351)
..+.++.|++ ++..+++++.++.+.+|. .+.+|...|.+++|+ +++++ |++++.||.|
T Consensus 700 ~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~s------p~~~~------l~s~s~dg~v 767 (1249)
T 3sfz_A 700 EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFS------PDDEL------LASCSADGTL 767 (1249)
T ss_dssp SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEEC------SSTTE------EEEEESSSEE
T ss_pred CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEe------cCCCE------EEEEECCCeE
Confidence 7888999999 556888899888887765 467899999999999 78888 9999999999
Q ss_pred EEEeccCCCcceEEEEEecc--------------------------------------------------ccccccceEE
Q 048511 151 MIWQPEKTTGIWMNVVTVGE--------------------------------------------------LSHSALGFYG 180 (351)
Q Consensus 151 ~iwd~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~i~~ 180 (351)
++||++. +.....+.... ...|...|.+
T Consensus 768 ~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~ 845 (1249)
T 3sfz_A 768 RLWDVRS--ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQY 845 (1249)
T ss_dssp EEEEGGG--TEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCE
T ss_pred EEEeCCC--CcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEE
Confidence 9999987 43333222100 1256778999
Q ss_pred EEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccccc-
Q 048511 181 GHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM- 259 (351)
Q Consensus 181 i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~- 259 (351)
++|+|+++++++++.|+.|++||+.++ ..+..+.+|...|.+++|+|++++|++++.|+.|++||+........
T Consensus 846 ~~~sp~~~~l~~~~~dg~v~vwd~~~~-----~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~ 920 (1249)
T 3sfz_A 846 CDFSPYDHLAVIALSQYCVELWNIDSR-----LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAI 920 (1249)
T ss_dssp EEECSSTTEEEEECSSSCEEEEETTTT-----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSS
T ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCC-----ceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeee
Confidence 999999999999999999999999886 55778889999999999999999999999999999999653110000
Q ss_pred ---------------------------------------------------------------Ccc-----ceEEecccc
Q 048511 260 ---------------------------------------------------------------GEN-----SWHEVARPQ 271 (351)
Q Consensus 260 ---------------------------------------------------------------~~~-----~~~~~~~~~ 271 (351)
... .......+.
T Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~ 1000 (1249)
T 3sfz_A 921 VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV 1000 (1249)
T ss_dssp SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECC
T ss_pred cccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecc
Confidence 000 011223345
Q ss_pred ccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511 272 VHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 272 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 307 (351)
+|...|++++|+| ++.+|++++.||.|++|++..
T Consensus 1001 ~h~~~v~~l~~s~--dg~~l~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A 1001 GHKKAVRHIQFTA--DGKTLISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp CCSSCCCCEEECS--SSSCEEEECSSSBEEEEETTT
T ss_pred cCCCceEEEEECC--CCCEEEEEcCCCEEEEEECCC
Confidence 7888899999999 999999999999999999873
No 82
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.2e-32 Score=263.86 Aligned_cols=252 Identities=15% Similarity=0.211 Sum_probs=215.0
Q ss_pred EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511 20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS 99 (351)
Q Consensus 20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (351)
.....+.+|.+.|++++|+ |++++|++++.||.|++||+.++....... .+...+.++.|+|+++.+++++
T Consensus 4 ~~~~~~~~h~~~v~~i~~s--------p~~~~la~~~~~g~v~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~ 74 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFH--------PTEPWVLTTLYSGRVEIWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVGS 74 (814)
T ss_dssp CCEEEEEEECSCEEEEEEC--------SSSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEEE
T ss_pred ccceeeecCCCceEEEEEC--------CCCCEEEEEeCCCEEEEEECCCCceEEEEe-cCCCcEEEEEEeCCCCEEEEEe
Confidence 3456889999999999999 889999999999999999999877655444 4567899999999999999999
Q ss_pred CceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc-ceEEEEEecc
Q 048511 100 SSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG-IWMNVVTVGE 170 (351)
Q Consensus 100 ~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~ 170 (351)
.++.+.+|. .+.+|.+.|.+++|+ +++.+ |++++.|+.|++||++. + .....+.
T Consensus 75 ~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s------~~~~~------l~~~~~dg~i~vw~~~~--~~~~~~~~~--- 137 (814)
T 3mkq_A 75 DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH------PTKPY------VLSGSDDLTVKLWNWEN--NWALEQTFE--- 137 (814)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEEC------SSSSE------EEEEETTSEEEEEEGGG--TSEEEEEEE---
T ss_pred CCCeEEEEECCCCcEEEEEecCCCCEEEEEEe------CCCCE------EEEEcCCCEEEEEECCC--CceEEEEEc---
Confidence 999887765 466799999999999 78888 99999999999999987 4 4444444
Q ss_pred ccccccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCcccCcccccccccc-cccEEEEEeec--CCCEEEEEeCCCcE
Q 048511 171 LSHSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH-FAAVMDISWSR--SSDYLLSVSHDQTT 246 (351)
Q Consensus 171 ~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp--~~~~l~s~~~dg~i 246 (351)
.|...|.+++|+| ++..+++++.||.|++||+.+.. ....+..+ ...+..++|+| ++.+|++++.||.|
T Consensus 138 --~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 210 (814)
T 3mkq_A 138 --GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210 (814)
T ss_dssp --CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-----CSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEE
T ss_pred --CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEE
Confidence 7888999999999 88999999999999999998763 34444444 47899999999 99999999999999
Q ss_pred EEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeec
Q 048511 247 RVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHA 316 (351)
Q Consensus 247 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~ 316 (351)
++||+.++. .+..+..|...|++++|+| ++.+|++++.||.|++||+. +..+..+..+
T Consensus 211 ~~~d~~~~~----------~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 269 (814)
T 3mkq_A 211 KIWDYQTKS----------CVATLEGHMSNVSFAVFHP--TLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (814)
T ss_dssp EEEETTTTE----------EEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred EEEECCCCc----------EEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence 999998776 5555667888999999999 89999999999999999987 5666665544
No 83
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=5.9e-32 Score=232.90 Aligned_cols=260 Identities=8% Similarity=-0.000 Sum_probs=207.3
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCcc-EEEEeeCCCcEEEEec-CCCcccceeecc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISI-LLVSSSQDKVIRIWKL-ALRGSSANTQST 78 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~-~l~t~~~dg~i~iwd~-~~~~~~~~~~~~ 78 (351)
+|+.||.|++|++...........+.+|...|++++|+ ++++ +|++++.||.|++||+ .++.. .....
T Consensus 28 ~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~l~~~~~dg~i~~wd~~~~~~~--~~~~~ 97 (342)
T 1yfq_A 28 ITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI--------DNTDLQIYVGTVQGEILKVDLIGSPSF--QALTN 97 (342)
T ss_dssp EEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEE--------ESSSEEEEEEETTSCEEEECSSSSSSE--EECBS
T ss_pred EEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEEC--------CCCCcEEEEEcCCCeEEEEEeccCCce--Eeccc
Confidence 46789999999998833233445666899999999999 8899 9999999999999999 77654 22233
Q ss_pred --cccceeeeEeeecCCeEEecCCceeEEEEEecc----------------ccccceEEEEecCCCCCCCCCcccCCCce
Q 048511 79 --YRKEVISLASYIEGPVLVAGSSSYQVSVESLLI----------------GHEDWVYSVQWEPPSTAPSDGVSCQQPSS 140 (351)
Q Consensus 79 --~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~ 140 (351)
+...+.++.|++ +..+++++.++.+.++.... .|...|.+++|+| ++
T Consensus 98 ~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~-------- 162 (342)
T 1yfq_A 98 NEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS------SR-------- 162 (342)
T ss_dssp CCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS------SE--------
T ss_pred cCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecC------Cc--------
Confidence 567889999999 99999999999888775322 2678899999994 32
Q ss_pred eEEeecCCeEEEEeccC-CCcceEEEEEeccccccccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCc-ccCcccccc
Q 048511 141 ILSASMDKTMMIWQPEK-TTGIWMNVVTVGELSHSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVD-IDNWQPQKV 217 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~ 217 (351)
+++++.|+.|++||++. ......... ..+...+.+++|+| +++++++++.||.|++|+++... .........
T Consensus 163 l~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 237 (342)
T 1yfq_A 163 LIVGMNNSQVQWFRLPLCEDDNGTIEE-----SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp EEEEESTTEEEEEESSCCTTCCCEEEE-----CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred EEEEeCCCeEEEEECCccccccceeee-----cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee
Confidence 88999999999999987 332222222 25677899999999 99999999999999999997651 000134556
Q ss_pred cccccc---------cEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccccc-ccceeEEEEeeeCC
Q 048511 218 PSGHFA---------AVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVH-GHDINCVTIIQGKG 287 (351)
Q Consensus 218 ~~~~~~---------~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~ 287 (351)
+..|.. .|.+++|+|++++|++++.||.|++||+.+++ .+..+..| ...|++++ + +
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~----------~~~~~~~~h~~~v~~~~--~--~ 303 (342)
T 1yfq_A 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK----------KIKNFAKFNEDSVVKIA--C--S 303 (342)
T ss_dssp EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE----------EEEECCCCSSSEEEEEE--E--C
T ss_pred eecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh----------HhhhhhcccCCCceEec--C--C
Confidence 666654 99999999999999999999999999998876 56667777 88999999 7 8
Q ss_pred CcEEEEecCCCe-EEEEe
Q 048511 288 NHRFVSGADEKV-ARVFE 304 (351)
Q Consensus 288 ~~~l~s~~~dg~-v~vw~ 304 (351)
+.+|++++.||. .+.|.
T Consensus 304 ~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 304 DNILCLATSDDTFKTNAA 321 (342)
T ss_dssp SSEEEEEEECTHHHHCSS
T ss_pred CCeEEEEecCCccccccc
Confidence 999999999998 55444
No 84
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.1e-32 Score=239.56 Aligned_cols=259 Identities=13% Similarity=0.106 Sum_probs=205.1
Q ss_pred EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCc------ccceeecccccceeeeEeeec--
Q 048511 20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRG------SSANTQSTYRKEVISLASYIE-- 91 (351)
Q Consensus 20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~-- 91 (351)
.....+.+|.+.|++++|+ + ++|++++.||+|++|++.+.. ... ....+...+.++.|+++
T Consensus 7 ~~~~~~~~h~~~i~~~~~~--------~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~ 75 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSAC--------N--SFTVSCSGDGYLKVWDNKLLDNENPKDKSY-SHFVHKSGLHHVDVLQAIE 75 (397)
T ss_dssp EEEEESSCSSSCEEEEEEC--------S--SEEEEEETTSEEEEEESBCCTTCCGGGGEE-EEECCTTCEEEEEEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEec--------C--CeEEEEcCCCEEEEEECCCcccccCCCcce-EEecCCCcEEEEEEecccc
Confidence 4566788999999999999 6 799999999999999999876 232 23355678899999999
Q ss_pred --C---CeEEecCCceeEEEE-------------Eecccc-----ccceEEEEecCCCCCCCCCcccCCCceeEEeecCC
Q 048511 92 --G---PVLVAGSSSYQVSVE-------------SLLIGH-----EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDK 148 (351)
Q Consensus 92 --~---~~l~~~~~~~~~~~~-------------~~~~~h-----~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~ 148 (351)
+ ..+++++.++.+.++ ..+..| ...|.+++|++.... ..... |++++.|+
T Consensus 76 ~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~------l~~~~~dg 148 (397)
T 1sq9_A 76 RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHR------LVATDVKG 148 (397)
T ss_dssp TTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEE------EEEEETTS
T ss_pred cCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC-CCceE------EEEEeCCC
Confidence 9 999999888877654 345566 589999999921000 22223 88999999
Q ss_pred eEEEEeccC------CCcceEE---EEE--eccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccc
Q 048511 149 TMMIWQPEK------TTGIWMN---VVT--VGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKV 217 (351)
Q Consensus 149 ~i~iwd~~~------~~~~~~~---~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 217 (351)
.|++||++. .+..... .+. ......+...|.+++|+|++ ++++++.|+.|++||+++. +++..
T Consensus 149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-----~~~~~ 222 (397)
T 1sq9_A 149 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-----RPLYN 222 (397)
T ss_dssp CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-----EEEEE
T ss_pred cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC-----ceeEE
Confidence 999999986 3222100 221 00113467889999999999 9999999999999999886 45677
Q ss_pred ccc---c---cccEEEEEeecCCCEEEEEeCC---CcEEEEcCCCccccccCccceEEeccccc-------------ccc
Q 048511 218 PSG---H---FAAVMDISWSRSSDYLLSVSHD---QTTRVFAPWKNVASLMGENSWHEVARPQV-------------HGH 275 (351)
Q Consensus 218 ~~~---~---~~~v~~v~~sp~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~-------------~~~ 275 (351)
+.. | ...|.+++|+|++++|++++.| +.|++||+++++ .+..+.. |..
T Consensus 223 ~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 292 (397)
T 1sq9_A 223 FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE----------RIGSLSVPTHSSQASLGEFAHSS 292 (397)
T ss_dssp EECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC----------EEEEECBC--------CCBSBSS
T ss_pred EeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc----------ccceeccCcccccccccccccCC
Confidence 777 8 8999999999999999999999 999999998876 4444555 888
Q ss_pred ceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhcee
Q 048511 276 DINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLN 314 (351)
Q Consensus 276 ~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~ 314 (351)
.|.+++|+| ++.+|++++.||.|++||+. ++.+..+.
T Consensus 293 ~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 293 WVMSLSFND--SGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp CEEEEEECS--SSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred cEEEEEECC--CCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 999999999 89999999999999999987 76777776
No 85
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.6e-32 Score=238.45 Aligned_cols=265 Identities=16% Similarity=0.208 Sum_probs=202.5
Q ss_pred eeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc----cccceeeeEeeec----CCeE
Q 048511 24 ELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST----YRKEVISLASYIE----GPVL 95 (351)
Q Consensus 24 ~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~----~~~l 95 (351)
...+|.+.|++++|+ |+.......+++++.++.|++||+.+++........ +...+.+++|+++ +.++
T Consensus 13 ~~~~h~~~v~~i~~~----p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l 88 (366)
T 3k26_A 13 LKEDHNQPLFGVQFN----WHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLL 88 (366)
T ss_dssp EECTTCSCEEEEEEC----TTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEE
T ss_pred eecCCCCceEEEEEe----cccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEE
Confidence 344899999999999 210013456666666789999999977665444322 3467899999999 6789
Q ss_pred EecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEE
Q 048511 96 VAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVT 167 (351)
Q Consensus 96 ~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 167 (351)
++++.++.+.++. .+.+|...|.+++|+| .++.+ |++++.|+.|++||++. +.....+.
T Consensus 89 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~------l~s~~~dg~i~iwd~~~--~~~~~~~~ 155 (366)
T 3k26_A 89 AVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHP-----RDPNL------LLSVSKDHALRLWNIQT--DTLVAIFG 155 (366)
T ss_dssp EEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECS-----SCTTE------EEEEETTSCEEEEETTT--TEEEEEEC
T ss_pred EEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECC-----CCCCE------EEEEeCCCeEEEEEeec--CeEEEEec
Confidence 9999998886654 4668999999999994 27888 99999999999999998 66555542
Q ss_pred eccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccC-----------------------ccccccccccccc
Q 048511 168 VGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDN-----------------------WQPQKVPSGHFAA 224 (351)
Q Consensus 168 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-----------------------~~~~~~~~~~~~~ 224 (351)
....|...|.+++|+|++++|++++.|+.|++||+++.+... .........|...
T Consensus 156 --~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (366)
T 3k26_A 156 --GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNY 233 (366)
T ss_dssp --STTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSC
T ss_pred --ccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcce
Confidence 123688899999999999999999999999999998753100 0001122338899
Q ss_pred EEEEEeecCCCEEEEEeCCCcEEEEcCCCcccccc----CccceEEeccccccccceeEEEEeeeCC--CcEEEEecCCC
Q 048511 225 VMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM----GENSWHEVARPQVHGHDINCVTIIQGKG--NHRFVSGADEK 298 (351)
Q Consensus 225 v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~l~s~~~dg 298 (351)
|.+++|+ +++|++++.|+.|++||+.+...... .......+..+..|...|++++|+| + +.+|++|+.||
T Consensus 234 v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~~~l~~~~~dg 309 (366)
T 3k26_A 234 VDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSM--DFWQKMLALGNQVG 309 (366)
T ss_dssp CCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEE--CTTSSEEEEECTTS
T ss_pred EEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcC--CCCCcEEEEEecCC
Confidence 9999999 67999999999999999987653110 0112234566677888899999999 7 99999999999
Q ss_pred eEEEEecC-chhhh
Q 048511 299 VARVFEAP-LSFLK 311 (351)
Q Consensus 299 ~v~vw~~~-~~~~~ 311 (351)
.|++||+. ++...
T Consensus 310 ~i~vwd~~~~~~~~ 323 (366)
T 3k26_A 310 KLYVWDLEVEDPHK 323 (366)
T ss_dssp CEEEEECCSSSGGG
T ss_pred cEEEEECCCCCCcc
Confidence 99999987 44433
No 86
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=8.4e-32 Score=249.92 Aligned_cols=266 Identities=16% Similarity=0.176 Sum_probs=216.5
Q ss_pred CceEEEEEccCCC--ceEEEEeeeecCCc-eeEEEeeCCcccCCCC--CccEEEEeeCCCcEEEEecCCC------c-cc
Q 048511 5 DNKIHLYRGQRTG--KFVRACELKGHTDW-IRSLDFSLPVCTSGEA--ISILLVSSSQDKVIRIWKLALR------G-SS 72 (351)
Q Consensus 5 dg~i~vw~~~~~~--~~~~~~~~~~h~~~-V~~l~~~~~~~~~~~~--~~~~l~t~~~dg~i~iwd~~~~------~-~~ 72 (351)
++.|+||++.+ + .......+.+|.+. |++++|+ + ++++|++++.||+|++||+.++ . ..
T Consensus 38 ~~~v~v~~~~~-~~~~~~~~~~~~~h~~~~v~~~~~s--------p~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~ 108 (615)
T 1pgu_A 38 GKSAFVRCLDD-GDSKVPPVVQFTGHGSSVVTTVKFS--------PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNV 108 (615)
T ss_dssp TTEEEEEECCS-SCCSSCSEEEECTTTTSCEEEEEEC--------SSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEE
T ss_pred CCeEEEEECCC-CCCccccceEEecCCCceEEEEEEC--------cCCCCCEEEEecCCCEEEEEeCCCCcccccccccc
Confidence 78999999987 4 11245678899999 9999999 8 8999999999999999999754 1 22
Q ss_pred ceeecccccceeeeEeeecCCeEEecCCc----eeEE------EEEeccccccceEEEEecCCCCCCCCCc-ccCCCcee
Q 048511 73 ANTQSTYRKEVISLASYIEGPVLVAGSSS----YQVS------VESLLIGHEDWVYSVQWEPPSTAPSDGV-SCQQPSSI 141 (351)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~------~~~~~~~h~~~v~~l~~~p~~~~~~~~~-~~~~~~~l 141 (351)
......+...+.+++|+++++.+++++.+ +.+. ....+.+|...|.+++|+ +++. + +
T Consensus 109 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~------~~~~~~------l 176 (615)
T 1pgu_A 109 KSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLK------QSRPMR------S 176 (615)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEEC------SSSSCE------E
T ss_pred cchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEEC------CCCCcE------E
Confidence 22233356789999999999999987765 4443 345677899999999999 5665 7 9
Q ss_pred EEeecCCeEEEEeccCCCcceEEEEEecccccccc---ceEEEEEcCC-CCEEEEEeeCCeEEEEEcccCcccCcccccc
Q 048511 142 LSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSAL---GFYGGHWSPD-GRSILAHGYGGAFHLWRNVGVDIDNWQPQKV 217 (351)
Q Consensus 142 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~i~~i~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 217 (351)
++++.|+.|++||++. +..+..+. .|.. .|.+++|+|+ +++|++++.|+.|++||++++ +.+..
T Consensus 177 ~~~~~d~~v~vwd~~~--~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----~~~~~ 244 (615)
T 1pgu_A 177 MTVGDDGSVVFYQGPP--FKFSASDR-----THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-----EFLKY 244 (615)
T ss_dssp EEEETTTEEEEEETTT--BEEEEEEC-----SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC-----CEEEE
T ss_pred EEEeCCCcEEEEeCCC--cceeeeec-----ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC-----CEeEE
Confidence 9999999999999988 66666655 6777 8999999999 999999999999999999886 44666
Q ss_pred c-c---cccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccccc----ccceeEEEEeeeCCCc
Q 048511 218 P-S---GHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVH----GHDINCVTIIQGKGNH 289 (351)
Q Consensus 218 ~-~---~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~ 289 (351)
+ . .|...|.+++|+ ++++|++++.|+.|++||+++++ .+..+..+ ...+.++.|. ++.
T Consensus 245 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~----------~~~~~~~~~~~~~~~~~~~~~~---~~~ 310 (615)
T 1pgu_A 245 IEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSK----------CVQKWTLDKQQLGNQQVGVVAT---GNG 310 (615)
T ss_dssp CCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTE----------EEEEEECCTTCGGGCEEEEEEE---ETT
T ss_pred ecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCc----------EEEEEcCCCCcccCceeEEEeC---CCC
Confidence 6 5 799999999999 99999999999999999998776 23333233 4567788885 488
Q ss_pred EEEEecCCCeEEEEecC-chhhhceeecc
Q 048511 290 RFVSGADEKVARVFEAP-LSFLKTLNHAT 317 (351)
Q Consensus 290 ~l~s~~~dg~v~vw~~~-~~~~~~~~~~~ 317 (351)
++++++.|+.|++||+. ++.+..+.+|.
T Consensus 311 ~l~~~~~~g~i~~~d~~~~~~~~~~~~~~ 339 (615)
T 1pgu_A 311 RIISLSLDGTLNFYELGHDEVLKTISGHN 339 (615)
T ss_dssp EEEEEETTSCEEEEETTEEEEEEEECCCS
T ss_pred eEEEEECCCCEEEEECCCCcEEEEEeCCC
Confidence 99999999999999987 66666666543
No 87
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-33 Score=262.78 Aligned_cols=239 Identities=19% Similarity=0.274 Sum_probs=197.5
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCC--ccEEEEeeCCCcEEEEecCCCcccceeecc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAI--SILLVSSSQDKVIRIWKLALRGSSANTQST 78 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~ 78 (351)
+|+.||+|+|||+.. +....+..+.+|.+.|++++|+ ++ +++|++|+.||+|++||+.++...
T Consensus 26 tg~~dg~I~vwd~~~-~~~~~~~~l~~h~~~V~~l~~s--------~~~~~~~l~s~s~Dg~I~vwd~~~~~~~------ 90 (753)
T 3jro_A 26 TCSSDKTIKIFEVEG-ETHKLIDTLTGHEGPVWRVDWA--------HPKFGTILASCSYDGKVLIWKEENGRWS------ 90 (753)
T ss_dssp EEETTTEEEEEEEET-TEEEEEEEECCCSSCEEEEEEC--------CTTSCSEEEEEETTSCEEEEEEETTEEE------
T ss_pred EEECCCcEEEEecCC-CCCccceeccCCcCceEEEEec--------CCCCCCEEEEEeCCCeEEEEECCCCccc------
Confidence 477899999999986 5567788999999999999999 55 899999999999999998875311
Q ss_pred cccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCC--CcccCCCceeEEeecCCeEEEEecc
Q 048511 79 YRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSD--GVSCQQPSSILSASMDKTMMIWQPE 156 (351)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~--~~~~~~~~~l~s~~~d~~i~iwd~~ 156 (351)
....+.+|...|.+++|+ ++ +.+ +++|+.||.|++||++
T Consensus 91 ---------------------------~~~~~~~h~~~V~~v~~s------p~~~~~~------l~sgs~dg~I~vwdl~ 131 (753)
T 3jro_A 91 ---------------------------QIAVHAVHSASVNSVQWA------PHEYGPL------LLVASSDGKVSVVEFK 131 (753)
T ss_dssp ---------------------------EEEEECCCSSCEEEEEEC------CGGGCSE------EEEEETTSEEEEEECC
T ss_pred ---------------------------ccccccCCCCCeEEEEEC------CCCCCCE------EEEEeCCCcEEEEEee
Confidence 223457799999999999 56 788 9999999999999999
Q ss_pred CCCcceEEEEEeccccccccceEEEEEcC-------------CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccc
Q 048511 157 KTTGIWMNVVTVGELSHSALGFYGGHWSP-------------DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFA 223 (351)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-------------~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 223 (351)
.........+. .|...|.+++|+| ++..+++++.||.|++||++++.. ...+...+.+|..
T Consensus 132 ~~~~~~~~~~~-----~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~~~~h~~ 205 (753)
T 3jro_A 132 ENGTTSPIIID-----AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-TYVLESTLEGHSD 205 (753)
T ss_dssp SSSCCCCEEEE-----CCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT-EEEEEEEECCCSS
T ss_pred cCCCcceeEee-----cCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc-cceeeeeecCCCC
Confidence 84323333333 6788999999999 589999999999999999987531 1234567788999
Q ss_pred cEEEEEeecC---CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeE
Q 048511 224 AVMDISWSRS---SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVA 300 (351)
Q Consensus 224 ~v~~v~~sp~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v 300 (351)
.|++++|+|+ +++|++++.||.|++||+..+.. ...........|...|++++|+| ++.+|++|+.||.|
T Consensus 206 ~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~l~~sp--dg~~l~s~s~Dg~I 278 (753)
T 3jro_A 206 WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG-----PWKKTLLKEEKFPDVLWRASWSL--SGNVLALSGGDNKV 278 (753)
T ss_dssp CEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS-----CCBCCBSSSSCCSSCCCCEEECT--TTCCEEEECSSSCE
T ss_pred cEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC-----cceeEEeccCCCCCceEEEEEcC--CCCEEEEEcCCCEE
Confidence 9999999999 89999999999999999988641 11123334456788899999999 89999999999999
Q ss_pred EEEecC
Q 048511 301 RVFEAP 306 (351)
Q Consensus 301 ~vw~~~ 306 (351)
++|++.
T Consensus 279 ~vwd~~ 284 (753)
T 3jro_A 279 TLWKEN 284 (753)
T ss_dssp ECCBCC
T ss_pred EEEecC
Confidence 999987
No 88
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-33 Score=253.83 Aligned_cols=225 Identities=10% Similarity=0.050 Sum_probs=175.4
Q ss_pred EEEeeCCCcEEEEecCCCcccce---eecccccceeeeEeeec------CCeEEecCCceeEEEEEe-------------
Q 048511 52 LVSSSQDKVIRIWKLALRGSSAN---TQSTYRKEVISLASYIE------GPVLVAGSSSYQVSVESL------------- 109 (351)
Q Consensus 52 l~t~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~~~------------- 109 (351)
|++++.|++|+||++.+++.... ....+...+..++|+|+ +.+|++++.++.+++|..
T Consensus 176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~ 255 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMC 255 (524)
T ss_dssp ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECC
T ss_pred hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceee
Confidence 34466889999999987654221 12233457889999986 579999999998887753
Q ss_pred ------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEE--
Q 048511 110 ------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGG-- 181 (351)
Q Consensus 110 ------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i-- 181 (351)
+.+|...|++++|+ ++ .. |++|+.||+|++||+++.. .....+. .|...|.++
T Consensus 256 ~~p~~~l~~h~~~v~sv~~s------~~-~~------lasgs~DgtV~lWD~~~~~-~~~~~~~-----~H~~~V~sv~~ 316 (524)
T 2j04_B 256 EKPSLTLSLADSLITTFDFL------SP-TT------VVCGFKNGFVAEFDLTDPE-VPSFYDQ-----VHDSYILSVST 316 (524)
T ss_dssp CSCSEEECCTTTCEEEEEES------SS-SE------EEEEETTSEEEEEETTBCS-SCSEEEE-----CSSSCEEEEEE
T ss_pred cCceEEEEcCCCCEEEEEec------CC-Ce------EEEEeCCCEEEEEECCCCC-CceEEee-----cccccEEEEEE
Confidence 34688899999999 43 36 9999999999999998721 2223333 788999999
Q ss_pred EEcCCC-CEEEEEeeCCeEEEEEcccCcccCcccccccccccc--cEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccc
Q 048511 182 HWSPDG-RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFA--AVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASL 258 (351)
Q Consensus 182 ~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~--~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~ 258 (351)
+|+|++ .+|++++.|++|+|||+++. ++...+.+|.. .|.+++|+|+++.|++++.|++|++||++.+.
T Consensus 317 ~~s~~g~~~laS~S~D~tvklWD~~~~-----~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~--- 388 (524)
T 2j04_B 317 AYSDFEDTVVSTVAVDGYFYIFNPKDI-----ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF--- 388 (524)
T ss_dssp ECCTTSCCEEEEEETTSEEEEECGGGH-----HHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT---
T ss_pred EcCCCCCeEEEEeccCCeEEEEECCCC-----CcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc---
Confidence 578887 89999999999999999886 34555656653 58899999999999999999999999998876
Q ss_pred cCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhc
Q 048511 259 MGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKT 312 (351)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~ 312 (351)
.+..+.+|...|++++|+| ++.+|++|+.|++|++|++....+..
T Consensus 389 -------~~~~l~gH~~~V~sva~Sp--~g~~l~Sgs~Dgtv~lwd~~~~~~~~ 433 (524)
T 2j04_B 389 -------AVHPLVSRETTITAIGVSR--LHPMVLAGSADGSLIITNAARRLLHG 433 (524)
T ss_dssp -------CCEEEEECSSCEEEEECCS--SCCBCEEEETTTEEECCBSCSSTTTC
T ss_pred -------cceeeecCCCceEEEEeCC--CCCeEEEEECCCEEEEEechHhhccc
Confidence 3334557999999999999 89999999999999999987655544
No 89
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-32 Score=228.52 Aligned_cols=245 Identities=19% Similarity=0.267 Sum_probs=204.4
Q ss_pred eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEec
Q 048511 19 FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAG 98 (351)
Q Consensus 19 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 98 (351)
+.....+.+|.+.|++++|. ++++|++++.||.|++||+.+....... ..+...+.+++|++++..++++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~~---------~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~ 77 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVAV---------DDSKVASVSRDGTVRLWSKDDQWLGTVV-YTGQGFLNSVCYDSEKELLLFG 77 (313)
T ss_dssp CEEEEEECCCSSCEEEEEEE---------ETTEEEEEETTSEEEEEEESSSEEEEEE-EECSSCEEEEEEETTTTEEEEE
T ss_pred HHHHHHhhCCCCCcEEEEec---------CCCEEEEEEcCCcEEEEECCCCEEEEEe-ecCCccEEEEEECCCCCEEEEe
Confidence 46778999999999999995 4778999999999999999876554433 3446789999999999999999
Q ss_pred CCceeEEEEE-----------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEE
Q 048511 99 SSSYQVSVES-----------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVT 167 (351)
Q Consensus 99 ~~~~~~~~~~-----------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 167 (351)
+.++.+.++. .+.+|...|.++.|. +++ |++++.|+.|++|| . +.....+.
T Consensus 78 ~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------~~~------l~~~~~d~~i~~~d--~--~~~~~~~~ 139 (313)
T 3odt_A 78 GKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--------DGV------VISGSWDKTAKVWK--E--GSLVYNLQ 139 (313)
T ss_dssp ETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE--------TTE------EEEEETTSEEEEEE--T--TEEEEEEE
T ss_pred cCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec--------CCE------EEEEeCCCCEEEEc--C--CcEEEecc
Confidence 9998886554 356788999999986 236 99999999999999 3 45555554
Q ss_pred eccccccccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCcccCccccccccc-ccccEEEEEeecCCCEEEEEeCCCc
Q 048511 168 VGELSHSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG-HFAAVMDISWSRSSDYLLSVSHDQT 245 (351)
Q Consensus 168 ~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~l~s~~~dg~ 245 (351)
.|...+.+++|.| +++++++++.|+.|++||... ....+.. |...|.+++|+|++. +++++.|+.
T Consensus 140 -----~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~ 206 (313)
T 3odt_A 140 -----AHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK-------VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGL 206 (313)
T ss_dssp -----CCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE-------EEEEECSSCSSCEEEEEEEETTE-EEEEETTSE
T ss_pred -----cCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc-------eEEEEeccCcccEEEEEEcCCCe-EEEccCCCe
Confidence 6888999999988 899999999999999999433 3455555 888999999999988 899999999
Q ss_pred EEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511 246 TRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT 317 (351)
Q Consensus 246 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~ 317 (351)
|++||+++++ .+..+..|...|++++|+| ++ .|++++.||.|++||+. ++.+..+..+.
T Consensus 207 i~i~d~~~~~----------~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 266 (313)
T 3odt_A 207 IKLVDMHTGD----------VLRTYEGHESFVYCIKLLP--NG-DIVSCGEDRTVRIWSKENGSLKQVITLPA 266 (313)
T ss_dssp EEEEETTTCC----------EEEEEECCSSCEEEEEECT--TS-CEEEEETTSEEEEECTTTCCEEEEEECSS
T ss_pred EEEEECCchh----------hhhhhhcCCceEEEEEEec--CC-CEEEEecCCEEEEEECCCCceeEEEeccC
Confidence 9999998876 5556668889999999999 67 69999999999999986 66666666554
No 90
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.6e-32 Score=261.53 Aligned_cols=259 Identities=16% Similarity=0.203 Sum_probs=218.5
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.||.|+|||+.+ + ..+..+.+|.+.|++++|+ +++++|++++.||.|++||+.+++...... .+.
T Consensus 30 ~~~~~g~v~iwd~~~-~--~~~~~~~~~~~~v~~~~~s--------~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-~~~ 97 (814)
T 3mkq_A 30 TTLYSGRVEIWNYET-Q--VEVRSIQVTETPVRAGKFI--------ARKNWIIVGSDDFRIRVFNYNTGEKVVDFE-AHP 97 (814)
T ss_dssp EEETTSEEEEEETTT-T--EEEEEEECCSSCEEEEEEE--------GGGTEEEEEETTSEEEEEETTTCCEEEEEE-CCS
T ss_pred EEeCCCEEEEEECCC-C--ceEEEEecCCCcEEEEEEe--------CCCCEEEEEeCCCeEEEEECCCCcEEEEEe-cCC
Confidence 367899999999988 6 5667888999999999999 889999999999999999999887665443 456
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEE---------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEE
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVES---------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMM 151 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~ 151 (351)
..+.+++|+|++..+++++.++.+.++. .+.+|...|.+++|+| .++.. |++++.||.|+
T Consensus 98 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p-----~~~~~------l~~~~~dg~v~ 166 (814)
T 3mkq_A 98 DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP-----KDPST------FASGCLDRTVK 166 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEET-----TEEEE------EEEEETTSEEE
T ss_pred CCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEc-----CCCCE------EEEEeCCCeEE
Confidence 7899999999999999999998887664 3567899999999994 37888 99999999999
Q ss_pred EEeccCCCcceEEEEEeccccccccceEEEEEcC--CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEE
Q 048511 152 IWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP--DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDIS 229 (351)
Q Consensus 152 iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~ 229 (351)
+||+.. +.....+. ..+...+.+++|+| ++.++++++.||.|++||++++ .++..+.+|...|.+++
T Consensus 167 vwd~~~--~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-----~~~~~~~~~~~~v~~~~ 235 (814)
T 3mkq_A 167 VWSLGQ--STPNFTLT----TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-----SCVATLEGHMSNVSFAV 235 (814)
T ss_dssp EEETTC--SSCSEEEE----CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-----EEEEEEECCSSCEEEEE
T ss_pred EEECCC--CcceeEEe----cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-----cEEEEEcCCCCCEEEEE
Confidence 999987 44444443 13447899999999 9999999999999999999886 45778888999999999
Q ss_pred eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCc--EEEEecCCCeEEEEecC
Q 048511 230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNH--RFVSGADEKVARVFEAP 306 (351)
Q Consensus 230 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~l~s~~~dg~v~vw~~~ 306 (351)
|+|++++|++++.||.|++||+.++. .+..+..|...+++++|+| ++. +++++ .|+.+.+|++.
T Consensus 236 ~~~~~~~l~~~~~dg~v~vwd~~~~~----------~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~ 301 (814)
T 3mkq_A 236 FHPTLPIIISGSEDGTLKIWNSSTYK----------VEKTLNVGLERSWCIATHP--TGRKNYIASG-FDNGFTVLSLG 301 (814)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTCS----------EEEEECCSSSSEEEEEECT--TCGGGEEEEE-ETTEEEEEECS
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCc----------EEEEeecCCCcEEEEEEcc--CCCceEEEEE-eCCCEEEEEcC
Confidence 99999999999999999999998876 5555667788899999999 665 45555 46667888865
No 91
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.1e-32 Score=234.64 Aligned_cols=261 Identities=10% Similarity=0.059 Sum_probs=202.1
Q ss_pred EeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc--cceeecccccceeeeEeeecCC-eEEecC
Q 048511 23 CELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS--SANTQSTYRKEVISLASYIEGP-VLVAGS 99 (351)
Q Consensus 23 ~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~l~~~~ 99 (351)
....+|.+.|++++|+ +++++|++++.|+.|++|++.++.. .......+...+.+++|++++. .+++++
T Consensus 5 ~~~~~h~~~v~~~~~s--------~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 76 (342)
T 1yfq_A 5 QIEQAPKDYISDIKII--------PSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT 76 (342)
T ss_dssp ECSSCCSSCEEEEEEE--------GGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE
T ss_pred ecccCCCCcEEEEEEc--------CCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEc
Confidence 3456899999999999 8899999999999999999987761 1122235567899999999999 999999
Q ss_pred CceeEEEEEe--------ccc--cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEE--EEE
Q 048511 100 SSYQVSVESL--------LIG--HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMN--VVT 167 (351)
Q Consensus 100 ~~~~~~~~~~--------~~~--h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~ 167 (351)
.++.+.++.. +.+ |...|.+++|+ + +.+ |++++.|+.|++||++........ ...
T Consensus 77 ~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~------~-~~~------l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 143 (342)
T 1yfq_A 77 VQGEILKVDLIGSPSFQALTNNEANLGICRICKY------G-DDK------LIAASWDGLIEVIDPRNYGDGVIAVKNLN 143 (342)
T ss_dssp TTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEE------T-TTE------EEEEETTSEEEEECHHHHTTBCEEEEESC
T ss_pred CCCeEEEEEeccCCceEeccccCCCCceEEEEeC------C-CCE------EEEEcCCCeEEEEcccccccccccccCCe
Confidence 9988888764 567 99999999999 7 777 999999999999998851111000 001
Q ss_pred eccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEccc-CcccCcccccccccccccEEEEEeec-CCCEEEEEeCCCc
Q 048511 168 VGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVG-VDIDNWQPQKVPSGHFAAVMDISWSR-SSDYLLSVSHDQT 245 (351)
Q Consensus 168 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~s~~~dg~ 245 (351)
+... .+...|.+++|+|++ +++++.|+.|++||+++ ... ........|...|.+++|+| ++++|++++.||.
T Consensus 144 ~~~~-~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~ 217 (342)
T 1yfq_A 144 SNNT-KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDD---NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR 217 (342)
T ss_dssp SSSS-SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTC---CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred eeEE-eeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccc---cceeeecCCCCceeEEEECCCCCCEEEEEecCCc
Confidence 1112 367789999999987 99999999999999987 431 12234446788999999999 9999999999999
Q ss_pred EEEEcCCCccccccCccceEEecccccc---------ccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceee
Q 048511 246 TRVFAPWKNVASLMGENSWHEVARPQVH---------GHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNH 315 (351)
Q Consensus 246 i~vwd~~~~~~~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~ 315 (351)
|++|++....... .......+..| ...|++++|+| ++.+|++++.||.|++||+. ++.+..+..
T Consensus 218 i~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 291 (342)
T 1yfq_A 218 VAVEFFDDQGDDY----NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP--RHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291 (342)
T ss_dssp EEEEECCTTCCST----TCTTCEEEECCCCCTTCCSSCCCEEEEEECT--TTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred EEEEEEcCCCccc----ccccceeeecccccccccccceeEEEEEEcC--CCCEEEEecCCceEEEEcCccHhHhhhhhc
Confidence 9999998761000 00022222334 44899999999 89999999999999999987 777777766
Q ss_pred c
Q 048511 316 A 316 (351)
Q Consensus 316 ~ 316 (351)
+
T Consensus 292 ~ 292 (342)
T 1yfq_A 292 F 292 (342)
T ss_dssp C
T ss_pred c
Confidence 5
No 92
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.2e-32 Score=236.88 Aligned_cols=257 Identities=12% Similarity=0.126 Sum_probs=198.3
Q ss_pred EEEEeeeecCCceeEEEeeCCcccCCCCCcc-EEEEeeC---CCcEEEEecCCCcccceeecccccceeeeEeeec---C
Q 048511 20 VRACELKGHTDWIRSLDFSLPVCTSGEAISI-LLVSSSQ---DKVIRIWKLALRGSSANTQSTYRKEVISLASYIE---G 92 (351)
Q Consensus 20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~-~l~t~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 92 (351)
.....+.+|.+.|++++|+ +++. ++++++. |+.|++||+.+++........+...+.++.|+++ +
T Consensus 9 ~~~~~~~~h~~~v~~~~~~--------p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 80 (357)
T 3i2n_A 9 IIAHIQKGFNYTVFDCKWV--------PCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQ 80 (357)
T ss_dssp EEEEEEEECSSCEEEEEEC--------TTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTT
T ss_pred HhhhhccCCCCceEEEEEc--------CCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCC
Confidence 3445668899999999999 7675 5556665 9999999999887665555566778999999998 6
Q ss_pred CeEEecCCceeEEEEE---------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcc-e
Q 048511 93 PVLVAGSSSYQVSVES---------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGI-W 162 (351)
Q Consensus 93 ~~l~~~~~~~~~~~~~---------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~ 162 (351)
..+++++.++.+.++. .+.+|...|.++.|.|.-...+++++ |++++.|+.|++||++. +. .
T Consensus 81 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~------l~~~~~d~~i~vwd~~~--~~~~ 152 (357)
T 3i2n_A 81 RYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPE------IVTGSRDGTVKVWDPRQ--KDDP 152 (357)
T ss_dssp CCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCE------EEEEETTSCEEEECTTS--CSSC
T ss_pred ceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccE------EEEEeCCCeEEEEeCCC--CCCc
Confidence 9999999888886654 45679999999966431000067788 99999999999999998 43 3
Q ss_pred EEEEEeccccccccceEEEE----EcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec---CCC
Q 048511 163 MNVVTVGELSHSALGFYGGH----WSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR---SSD 235 (351)
Q Consensus 163 ~~~~~~~~~~~~~~~i~~i~----~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp---~~~ 235 (351)
...+... .......+.+++ |+|+++++++++.|+.|++||+++.+ . .....|...|.+++|+| ++.
T Consensus 153 ~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~-~~~~~~~~~v~~~~~~~~~~~~~ 225 (357)
T 3i2n_A 153 VANMEPV-QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA-----L-RWETNIKNGVCSLEFDRKDISMN 225 (357)
T ss_dssp SEEECCC-TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-----E-EEEEECSSCEEEEEESCSSSSCC
T ss_pred ceecccc-CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-----e-eeecCCCCceEEEEcCCCCCCCC
Confidence 4444311 112234788888 78899999999999999999998864 2 33456888999999999 999
Q ss_pred EEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCc-EEEEecCCCeEEEEecC
Q 048511 236 YLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNH-RFVSGADEKVARVFEAP 306 (351)
Q Consensus 236 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~l~s~~~dg~v~vw~~~ 306 (351)
+|++++.||.|++||+++..... .+ .......|...|++++|+| ++. +|++++.||.|++||+.
T Consensus 226 ~l~~~~~dg~i~i~d~~~~~~~~----~~-~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 226 KLVATSLEGKFHVFDMRTQHPTK----GF-ASVSEKAHKSTVWQVRHLP--QNRELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp EEEEEESTTEEEEEEEEEEETTT----EE-EEEEEECCSSCEEEEEEET--TEEEEEEEEETTSEEEEEEEE
T ss_pred EEEEECCCCeEEEEeCcCCCccc----ce-eeeccCCCcCCEEEEEECC--CCCcEEEEEeCCCcEEEeecC
Confidence 99999999999999998765211 11 1113347888999999999 777 89999999999999976
No 93
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2e-31 Score=238.21 Aligned_cols=252 Identities=19% Similarity=0.318 Sum_probs=207.6
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.||+|++||+.+ + ..+..+.+|...|.++.|+ ++.|++++.||+|++||+.+++...... .+.
T Consensus 174 s~~~dg~i~vwd~~~-~--~~~~~~~~h~~~v~~~~~~----------~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~ 239 (445)
T 2ovr_B 174 SGSTDRTLKVWNAET-G--ECIHTLYGHTSTVRCMHLH----------EKRVVSGSRDATLRVWDIETGQCLHVLM-GHV 239 (445)
T ss_dssp EEETTSCEEEEETTT-T--EEEEEECCCSSCEEEEEEE----------TTEEEEEETTSEEEEEESSSCCEEEEEE-CCS
T ss_pred EEeCCCeEEEEECCc-C--cEEEEECCCCCcEEEEEec----------CCEEEEEeCCCEEEEEECCCCcEEEEEc-CCc
Confidence 478899999999998 6 5677889999999999998 5689999999999999999877655443 345
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI 152 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i 152 (351)
..+.++.+ ++..+++++.++.+.++. .+.+|...|.++.|. +.. +++++.|+.|++
T Consensus 240 ~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--------~~~------l~~~~~d~~i~i 303 (445)
T 2ovr_B 240 AAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--------GIH------VVSGSLDTSIRV 303 (445)
T ss_dssp SCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEEC--------SSE------EEEEETTSCEEE
T ss_pred ccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEEC--------CCE------EEEEeCCCeEEE
Confidence 56777777 788999999888887664 466799999999985 456 999999999999
Q ss_pred EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc---ccccEEEEE
Q 048511 153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG---HFAAVMDIS 229 (351)
Q Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~---~~~~v~~v~ 229 (351)
||+++ +..+..+. .|...+.++.+ +++++++++.||.|++||++++ +++..+.. |...|.+++
T Consensus 304 ~d~~~--~~~~~~~~-----~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~~~v~~~~ 369 (445)
T 2ovr_B 304 WDVET--GNCIHTLT-----GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTG-----QCLQTLQGPNKHQSAVTCLQ 369 (445)
T ss_dssp EETTT--CCEEEEEC-----CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTC-----CEEEEECSTTSCSSCEEEEE
T ss_pred EECCC--CCEEEEEc-----CCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCC-----cEEEEEccCCCCCCCEEEEE
Confidence 99998 77666655 67778888877 4679999999999999999886 44555554 888999999
Q ss_pred eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEec--cccccccceeEEEEeeeCCCcEEEEecCCCe----EEEE
Q 048511 230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVA--RPQVHGHDINCVTIIQGKGNHRFVSGADEKV----ARVF 303 (351)
Q Consensus 230 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~----v~vw 303 (351)
|+ +++|++++.||.|++||+.+++. ...+. ....|...|++++|+| ++.++++|+.||. |.||
T Consensus 370 ~~--~~~l~s~~~dg~v~iwd~~~~~~-------~~~~~~~~~~~~~~~v~~~~~s~--~~~~la~~~~dg~~~~~l~v~ 438 (445)
T 2ovr_B 370 FN--KNFVITSSDDGTVKLWDLKTGEF-------IRNLVTLESGGSGGVVWRIRASN--TKLVCAVGSRNGTEETKLLVL 438 (445)
T ss_dssp EC--SSEEEEEETTSEEEEEETTTCCE-------EEEEEECTTGGGTCEEEEEEECS--SEEEEEEECSSSSSCCEEEEE
T ss_pred EC--CCEEEEEeCCCeEEEEECCCCce-------eeeeeccccCCCCceEEEEEecC--CEEEEEEcccCCCCccEEEEE
Confidence 96 57999999999999999998872 11221 1246778899999999 8999999999997 9999
Q ss_pred ecCc
Q 048511 304 EAPL 307 (351)
Q Consensus 304 ~~~~ 307 (351)
|+..
T Consensus 439 df~~ 442 (445)
T 2ovr_B 439 DFDV 442 (445)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9874
No 94
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-31 Score=231.54 Aligned_cols=263 Identities=15% Similarity=0.159 Sum_probs=214.0
Q ss_pred CceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEE
Q 048511 17 GKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLV 96 (351)
Q Consensus 17 ~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 96 (351)
|.......+.+|.+.|++++|+ +++++|++++.||.|++||+.+++..... ..+...+.+++|+++++.++
T Consensus 20 G~~~~~~~l~~h~~~v~~~~~s--------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~ 90 (369)
T 3zwl_B 20 GSHMKAIKLTGHERPLTQVKYN--------KEGDLLFSCSKDSSASVWYSLNGERLGTL-DGHTGTIWSIDVDCFTKYCV 90 (369)
T ss_dssp CCSEEEEEEECCSSCEEEEEEC--------TTSCEEEEEESSSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEE
T ss_pred ccccccEEEEEeeceEEEEEEc--------CCCCEEEEEeCCCEEEEEeCCCchhhhhh-hhcCCcEEEEEEcCCCCEEE
Confidence 5556778899999999999999 88999999999999999999987765544 34566889999999999999
Q ss_pred ecCCceeEEEEEec-------cccccceEEEEecCCCCCCCCCcccCCCceeEEeecC-----CeEEEEeccCCCcceEE
Q 048511 97 AGSSSYQVSVESLL-------IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD-----KTMMIWQPEKTTGIWMN 164 (351)
Q Consensus 97 ~~~~~~~~~~~~~~-------~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~ 164 (351)
+++.++.+.++... ..|...|.+++|+ +++.+ |++++.+ +.|++||+.........
T Consensus 91 s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~------~~~~~------l~~~~~~~~~~~g~i~~~d~~~~~~~~~~ 158 (369)
T 3zwl_B 91 TGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFS------PCGNY------FLAILDNVMKNPGSINIYEIERDSATHEL 158 (369)
T ss_dssp EEETTTEEEEEETTTCCEEEEEECSSCEEEEEEC------TTSSE------EEEEECCBTTBCCEEEEEEEEECTTTCCE
T ss_pred EEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEc------cCCCE------EEEecCCccCCCCEEEEEEecCCccceee
Confidence 99999988877532 1277889999999 78888 9999998 99999999873221111
Q ss_pred EEE----ecccccccc--ceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEE
Q 048511 165 VVT----VGELSHSAL--GFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLL 238 (351)
Q Consensus 165 ~~~----~~~~~~~~~--~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~ 238 (351)
... ......+.. .+.+++|+|++++|++++.||.|++||+++.. ..+..+..|...|.+++|+|++++|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~ 234 (369)
T 3zwl_B 159 TKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY----EYVDSIDLHEKSISDMQFSPDLTYFI 234 (369)
T ss_dssp EEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT----EEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred cccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc----EeEEEEecCCCceeEEEECCCCCEEE
Confidence 000 000113333 89999999999999999999999999998732 56778888999999999999999999
Q ss_pred EEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCC--------------eEEEEe
Q 048511 239 SVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEK--------------VARVFE 304 (351)
Q Consensus 239 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg--------------~v~vw~ 304 (351)
+++.|+.|++||+++.. .+..+. +...+.+++|+| ++.++++++.++ .+++||
T Consensus 235 ~~~~d~~i~v~d~~~~~----------~~~~~~-~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d 301 (369)
T 3zwl_B 235 TSSRDTNSFLVDVSTLQ----------VLKKYE-TDCPLNTAVITP--LKEFIILGGGQEAKDVTTTSANEGKFEARFYH 301 (369)
T ss_dssp EEETTSEEEEEETTTCC----------EEEEEE-CSSCEEEEEECS--SSSEEEEEECCC-------------CEEEEEE
T ss_pred EecCCceEEEEECCCCc----------eeeeec-CCCCceeEEecC--CCceEEEeecCCCceEEEEecCCCcceeEEEe
Confidence 99999999999998876 333332 567799999999 899999999888 899999
Q ss_pred cC-chhhhceeecc
Q 048511 305 AP-LSFLKTLNHAT 317 (351)
Q Consensus 305 ~~-~~~~~~~~~~~ 317 (351)
.. ++.+..+.++.
T Consensus 302 ~~~~~~~~~~~~~~ 315 (369)
T 3zwl_B 302 KIFEEEIGRVQGHF 315 (369)
T ss_dssp TTTCCEEEEEECCS
T ss_pred cCCCcchhheeccc
Confidence 86 66666666554
No 95
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=7.4e-32 Score=224.92 Aligned_cols=253 Identities=9% Similarity=0.015 Sum_probs=186.9
Q ss_pred CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCc-------------------ccCCCCC----ccEEEEeeCCCcE
Q 048511 5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPV-------------------CTSGEAI----SILLVSSSQDKVI 61 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-------------------~~~~~~~----~~~l~t~~~dg~i 61 (351)
..+|++|+..+..++++++++..|+.+|..|.+.|.. .-+ ++ +.++++++.+ +
T Consensus 62 ~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s--pd~~~~~~~l~s~g~~--~ 137 (356)
T 2w18_A 62 EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS--SDDESEKQVLLKSGNI--K 137 (356)
T ss_dssp SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC--------CCEEEEEEEEE--E
T ss_pred cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC--CCccccccEEEeCCCe--E
Confidence 4689999999855778899999999877777766410 001 55 7888888754 8
Q ss_pred EEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCcee
Q 048511 62 RIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSI 141 (351)
Q Consensus 62 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l 141 (351)
++|++.+++.+......+...+..++++++|+.+. .+.+|...++.++|+|-. .++.+ |
T Consensus 138 ~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~------------s~~~~~~~v~~l~fs~~~---g~~~~------L 196 (356)
T 2w18_A 138 AVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKE------------NQFLMPPEETILTFAEVQ---GMQEA------L 196 (356)
T ss_dssp EEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEE------------EEEECCCSSCEEEEEEEE---TSTTE------E
T ss_pred EEEecCCCcEEEecccCCCCcEEEEEECCCCceee------------eeccCCCceeeEEeeccC---CCCce------E
Confidence 88999776665554455677888888888887654 455788889899998411 26678 9
Q ss_pred EEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEE------------EEEeeCCeEEEEEcccCcc
Q 048511 142 LSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSI------------LAHGYGGAFHLWRNVGVDI 209 (351)
Q Consensus 142 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l------------~~~~~dg~i~~~d~~~~~~ 209 (351)
++++.|++|+|||+++ ++.+.++.... .+...+.+++|+|++.++ ++|+.|++|++||..+++
T Consensus 197 aSgS~D~TIkIWDl~T--Gk~l~tL~g~~--~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk- 271 (356)
T 2w18_A 197 LGTTIMNNIVIWNLKT--GQLLKKMHIDD--SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL- 271 (356)
T ss_dssp EEEETTSEEEEEETTT--CCEEEEEECCC-----CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE-
T ss_pred EEecCCCcEEEEECCC--CcEEEEEcCCC--cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE-
Confidence 9999999999999999 88888876211 123467888999999876 567889999999998873
Q ss_pred cCccccccc-----ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccccccccee-EEEEe
Q 048511 210 DNWQPQKVP-----SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDIN-CVTII 283 (351)
Q Consensus 210 ~~~~~~~~~-----~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~ 283 (351)
.+..+ .+|...+.+..+ ++.++++++.|++|+|||+.+++ .+..+.+|...+. +++|+
T Consensus 272 ----~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk----------~l~tL~gH~~~vvs~vafS 335 (356)
T 2w18_A 272 ----SVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQ----------CTALLPPVSDQHWSFVKWS 335 (356)
T ss_dssp ----EEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCS----------EEEEECCC--CCCCEEEEC
T ss_pred ----EEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCc----------EEEEecCCCCCeEEEEEEC
Confidence 22222 466655544444 47899999999999999999987 5666667776554 68999
Q ss_pred eeCCCcEEEEecCCCeEEEEec
Q 048511 284 QGKGNHRFVSGADEKVARVFEA 305 (351)
Q Consensus 284 ~~~~~~~l~s~~~dg~v~vw~~ 305 (351)
| |+++|++|+.|++|+|||+
T Consensus 336 P--DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 336 G--TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp S--SSSEEEEECTTSCEEEEEE
T ss_pred C--CCCEEEEEECCCcEEEecC
Confidence 9 9999999999999999985
No 96
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.5e-32 Score=274.41 Aligned_cols=264 Identities=16% Similarity=0.269 Sum_probs=224.1
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc-------
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA------- 73 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~------- 73 (351)
+|+.||.|++||+.+ + ..+..+.+|.+.|++++|+ +++.+|++++.|++|++|++.+.....
T Consensus 857 ~~~~dg~v~vwd~~~-~--~~~~~~~~h~~~v~~v~~s--------pdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~ 925 (1249)
T 3sfz_A 857 IALSQYCVELWNIDS-R--LKVADCRGHLSWVHGVMFS--------PDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE 925 (1249)
T ss_dssp EECSSSCEEEEETTT-T--EEEEEECCCSSCEEEEEEC--------TTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEE
T ss_pred EEeCCCeEEEEEcCC-C--ceeeecCCCccceEEEEEC--------CCCCEEEEEeCCCeEEEEEccccceeeeecccce
Confidence 367899999999998 6 5677889999999999999 889999999999999999976421100
Q ss_pred -----------------------------eeecccccceeeeEeeecCCeEEecCCceeEEEEE--------eccccccc
Q 048511 74 -----------------------------NTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDW 116 (351)
Q Consensus 74 -----------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~ 116 (351)
.........+.+++++|++..++++..++.+.++. .+.+|...
T Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~ 1005 (1249)
T 3sfz_A 926 IDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKA 1005 (1249)
T ss_dssp EEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSC
T ss_pred eeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCc
Confidence 00011134577899999999999999998887665 45689999
Q ss_pred eEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC
Q 048511 117 VYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196 (351)
Q Consensus 117 v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 196 (351)
|.+++|+ +++++ |++++.|+.|++||+.+ +.... ...|...|.+++|+|++ .+++++.|
T Consensus 1006 v~~l~~s------~dg~~------l~s~~~dg~i~vwd~~~--~~~~~------~~~~~~~v~~~~~~~~~-~l~~~~~d 1064 (1249)
T 3sfz_A 1006 VRHIQFT------ADGKT------LISSSEDSVIQVWNWQT--GDYVF------LQAHQETVKDFRLLQDS-RLLSWSFD 1064 (1249)
T ss_dssp CCCEEEC------SSSSC------EEEECSSSBEEEEETTT--TEEEC------CBCCSSCEEEEEECSSS-EEEEEESS
T ss_pred eEEEEEC------CCCCE------EEEEcCCCEEEEEECCC--CceEE------EecCCCcEEEEEEcCCC-cEEEEECC
Confidence 9999999 78899 99999999999999998 55432 23678899999999965 57889999
Q ss_pred CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccc
Q 048511 197 GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHD 276 (351)
Q Consensus 197 g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (351)
+.|++||+.++ .+...+.+|...|.+++|+|++++|++++.|+.|++||+.++. .+..+.+|...
T Consensus 1065 g~v~vwd~~~~-----~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~----------~~~~l~~h~~~ 1129 (1249)
T 3sfz_A 1065 GTVKVWNVITG-----RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS----------PLHELKGHNGC 1129 (1249)
T ss_dssp SEEEEEETTTT-----CCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS----------CSBCCCCCSSC
T ss_pred CcEEEEECCCC-----ceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc----------eeeeeccCCCc
Confidence 99999999887 5677888999999999999999999999999999999998876 56677789999
Q ss_pred eeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhce
Q 048511 277 INCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTL 313 (351)
Q Consensus 277 i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~ 313 (351)
|++++|+| ++.+|++|+.||.|++||+. ++.+..+
T Consensus 1130 v~~~~~s~--dg~~lat~~~dg~i~vwd~~~~~~~~~~ 1165 (1249)
T 3sfz_A 1130 VRCSAFSL--DGILLATGDDNGEIRIWNVSDGQLLHSC 1165 (1249)
T ss_dssp EEEEEECS--SSSEEEEEETTSCCCEEESSSSCCCCCC
T ss_pred EEEEEECC--CCCEEEEEeCCCEEEEEECCCCceEEEe
Confidence 99999999 99999999999999999987 6666554
No 97
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-32 Score=234.99 Aligned_cols=232 Identities=10% Similarity=0.080 Sum_probs=168.7
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.||+|++||+.+ ++. +..+. ...|.++.|+ +. +++++.|++|++|+.............
T Consensus 53 sg~~Dg~v~iwd~~~-~~~--~~~~~--~~~v~~~~~~--------~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~-- 114 (343)
T 3lrv_A 53 CRCEDGALHFTQLKD-SKT--ITTIT--TPNPRTGGEH--------PA---IISRGPCNRLLLLYPGNQITILDSKTN-- 114 (343)
T ss_dssp EEEETTEEEEEEESS-SSC--EEEEE--EECCCTTCCC--------CS---EEEECSTTEEEEEETTTEEEEEETTTC--
T ss_pred EECCCCcEEEEECCC-CcE--EEEEe--cCCceeeeeC--------Cc---eEEecCCCeEEEEEccCceEEeecCCc--
Confidence 467888888888887 543 22333 4567777777 54 888888888888887642111110000
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCC--CCcccCCCceeEEeecCCeEEEEeccCC
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPS--DGVSCQQPSSILSASMDKTMMIWQPEKT 158 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~--~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 158 (351)
. .+.....+|.+.|.+++|+ + ++++ |++++.|++|++||+++
T Consensus 115 ----------------------~-~~~~~~~~~~~~v~~~~~~------~~~~~~~------l~s~s~dg~i~~wd~~~- 158 (343)
T 3lrv_A 115 ----------------------K-VLREIEVDSANEIIYMYGH------NEVNTEY------FIWADNRGTIGFQSYED- 158 (343)
T ss_dssp ----------------------C-EEEEEECCCSSCEEEEECC------C---CCE------EEEEETTCCEEEEESSS-
T ss_pred ----------------------c-eeEEeecCCCCCEEEEEcC------CCCCCCE------EEEEeCCCcEEEEECCC-
Confidence 0 0112223577899999999 6 7888 99999999999999998
Q ss_pred CcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccc-ccccc-ccccEEEEEeecCCCE
Q 048511 159 TGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQ-KVPSG-HFAAVMDISWSRSSDY 236 (351)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~~-~~~~v~~v~~sp~~~~ 236 (351)
+....... ..+...+.+++|+|++.+|++|+.||.|++||+++++ .. ..+.. |...|++++|+|++.+
T Consensus 159 -~~~~~~~~----~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~-----~~~~~~~~~h~~~v~~l~fs~~g~~ 228 (343)
T 3lrv_A 159 -DSQYIVHS----AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD-----QASSRFPVDEEAKIKEVKFADNGYW 228 (343)
T ss_dssp -SCEEEEEC----CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTT-----SCCEECCCCTTSCEEEEEECTTSSE
T ss_pred -CcEEEEEe----cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCC-----CCccEEeccCCCCEEEEEEeCCCCE
Confidence 65544332 2345579999999999999999999999999999874 33 56677 9999999999999999
Q ss_pred EEEEeCCCcEEEEcCCCccccccCccceEEecccccccccee--EEEEeeeCCCcEEEEecC-CCeEEEEecC
Q 048511 237 LLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDIN--CVTIIQGKGNHRFVSGAD-EKVARVFEAP 306 (351)
Q Consensus 237 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~l~s~~~-dg~v~vw~~~ 306 (351)
|++++ |+.|++||++..... ..+..+..|...+. +++|+| ++.+|++++. |+.|+||++.
T Consensus 229 l~s~~-~~~v~iwd~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~--~g~~l~~~s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 229 MVVEC-DQTVVCFDLRKDVGT-------LAYPTYTIPEFKTGTVTYDIDD--SGKNMIAYSNESNSLTIYKFD 291 (343)
T ss_dssp EEEEE-SSBEEEEETTSSTTC-------BSSCCCBC-----CCEEEEECT--TSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEe-CCeEEEEEcCCCCcc-------eeecccccccccccceEEEECC--CCCEEEEecCCCCcEEEEEEc
Confidence 99999 559999999887621 12222222334444 699999 9999999888 9999999985
No 98
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=5.8e-31 Score=236.38 Aligned_cols=252 Identities=19% Similarity=0.234 Sum_probs=203.5
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccce------
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSAN------ 74 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~------ 74 (351)
+|+.||+|++||+++ + ..+..+.+|.+.|.+++|+ +. +++.+|++++.|++|++||+.+......
T Consensus 178 s~s~dg~i~vwd~~~-~--~~~~~~~~h~~~v~~l~~~----~~--~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 248 (464)
T 3v7d_B 178 SGSTDRTVRVWDIKK-G--CCTHVFEGHNSTVRCLDIV----EY--KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD 248 (464)
T ss_dssp EEETTSCEEEEETTT-T--EEEEEECCCSSCEEEEEEE----ES--SSCEEEEEEETTSCEEEEECCCCCCC------CC
T ss_pred EEeCCCCEEEEECCC-C--cEEEEECCCCCccEEEEEe----cC--CCCCEEEEEcCCCcEEEeeCCCCcccccccccCC
Confidence 478999999999998 7 5677889999999999998 43 5678999999999999999987654321
Q ss_pred ----------------eecccccceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCC
Q 048511 75 ----------------TQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPS 130 (351)
Q Consensus 75 ----------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~ 130 (351)
....+... ...+++++..+++++.++.+.++. .+.+|...|.+++|+ +
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~------~ 320 (464)
T 3v7d_B 249 YPLVFHTPEENPYFVGVLRGHMAS--VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD------H 320 (464)
T ss_dssp SSEEESCGGGCTTEEEEECCCSSC--EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE------T
T ss_pred cceEeeccCCCeEEEEEccCccce--EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEc------C
Confidence 11112222 233478899999999988886654 467899999999999 7
Q ss_pred CCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc
Q 048511 131 DGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID 210 (351)
Q Consensus 131 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 210 (351)
+++. |++|+.|+.|++||+++ +..+..+. .|...|.+++|+ +.++++++.||.|++||+++..
T Consensus 321 ~~~~------l~sg~~dg~i~vwd~~~--~~~~~~~~-----~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~-- 383 (464)
T 3v7d_B 321 ERKR------CISASMDTTIRIWDLEN--GELMYTLQ-----GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS-- 383 (464)
T ss_dssp TTTE------EEEEETTSCEEEEETTT--TEEEEEEC-----CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC--
T ss_pred CCCE------EEEEeCCCcEEEEECCC--CcEEEEEe-----CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc--
Confidence 8888 99999999999999998 77777665 788899999997 5899999999999999998863
Q ss_pred CcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecc-ccccccceeEEEEeeeCCCc
Q 048511 211 NWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVAR-PQVHGHDINCVTIIQGKGNH 289 (351)
Q Consensus 211 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~ 289 (351)
..... .+...+..++|+|++++|++++ |+.|++||+++++ .+.. ...|...|++++|+. ..
T Consensus 384 ---~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~----------~~~~~~~~~~~~v~~v~~~~---~~ 445 (464)
T 3v7d_B 384 ---RKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK----------LVHANILKDADQIWSVNFKG---KT 445 (464)
T ss_dssp ---EEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC----------EEESCTTTTCSEEEEEEEET---TE
T ss_pred ---eeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc----------EEehhhccCCCcEEEEEecC---CE
Confidence 22222 3566788899999999999998 8999999999887 4433 556788899999974 77
Q ss_pred EEEEecCCCeEEEEe
Q 048511 290 RFVSGADEKVARVFE 304 (351)
Q Consensus 290 ~l~s~~~dg~v~vw~ 304 (351)
++++++.||.+.+|-
T Consensus 446 l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 446 LVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEEEEEETTEEEEEE
T ss_pred EEEEEEeCCeEEEEE
Confidence 788888888776664
No 99
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=4.8e-32 Score=235.48 Aligned_cols=250 Identities=15% Similarity=0.140 Sum_probs=198.7
Q ss_pred EEEEeeeecCCceeEEEeeCCcccCCCCC---ccEEEEeeCCCcEEEEecCC-CcccceeecccccceeeeEeeecCCeE
Q 048511 20 VRACELKGHTDWIRSLDFSLPVCTSGEAI---SILLVSSSQDKVIRIWKLAL-RGSSANTQSTYRKEVISLASYIEGPVL 95 (351)
Q Consensus 20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~---~~~l~t~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l 95 (351)
..+..+.+|.+.|++++|+ ++ +++|++++.||.|++||+.+ +.........+...+.+++|++++..+
T Consensus 30 ~~~~~~~~h~~~v~~~~~~--------~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 101 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFS--------PPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 101 (368)
T ss_dssp CCEECSSCCSSCEEEEEEC--------CTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred ceeEeccCCCCceEEEEEc--------CCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEE
Confidence 4567889999999999999 66 69999999999999999997 444435555667889999999999999
Q ss_pred EecCCceeEEEEEe-------ccccccceEEEEe--cCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEE
Q 048511 96 VAGSSSYQVSVESL-------LIGHEDWVYSVQW--EPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVV 166 (351)
Q Consensus 96 ~~~~~~~~~~~~~~-------~~~h~~~v~~l~~--~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 166 (351)
++++.++.+.+|.. +.+|...|.+++| + +++.+ |++++.|+.|++||+++ +..+..+
T Consensus 102 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~------~~~~~------l~~~~~dg~i~vwd~~~--~~~~~~~ 167 (368)
T 3mmy_A 102 FTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKA------PNYSC------VMTGSWDKTLKFWDTRS--SNPMMVL 167 (368)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEEC------SSCEE------EEEEETTSEEEEECSSC--SSCSEEE
T ss_pred EEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeC------CCCCE------EEEccCCCcEEEEECCC--CcEEEEE
Confidence 99999998887753 4568999999999 6 68888 99999999999999987 4433333
Q ss_pred Eecc------------------------------------ccccccceEEEEEcCCCCE----EEEEeeCCeEEEEEccc
Q 048511 167 TVGE------------------------------------LSHSALGFYGGHWSPDGRS----ILAHGYGGAFHLWRNVG 206 (351)
Q Consensus 167 ~~~~------------------------------------~~~~~~~i~~i~~~~~~~~----l~~~~~dg~i~~~d~~~ 206 (351)
.... .......+.++++.++... +++++.|+.|++||++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 168 QLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP 247 (368)
T ss_dssp ECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSC
T ss_pred ecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCC
Confidence 2110 0011233455555554443 99999999999999987
Q ss_pred CcccCcccccccccccc------------cEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccc
Q 048511 207 VDIDNWQPQKVPSGHFA------------AVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHG 274 (351)
Q Consensus 207 ~~~~~~~~~~~~~~~~~------------~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 274 (351)
... ......+..|.. .|++++|+|++++|++++.||.|++||+.+++ .+..+..|.
T Consensus 248 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~ 315 (368)
T 3mmy_A 248 PNP--AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART----------KLKTSEQLD 315 (368)
T ss_dssp SCH--HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE----------EEEECCCCS
T ss_pred CCc--cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc----------EEEEecCCC
Confidence 531 023455566655 79999999999999999999999999998876 566677889
Q ss_pred cceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511 275 HDINCVTIIQGKGNHRFVSGADEKVARVFEA 305 (351)
Q Consensus 275 ~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~ 305 (351)
..|++++|+| ++.+|++++.|+..+.|++
T Consensus 316 ~~v~~~~~s~--~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 316 QPISACCFNH--NGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp SCEEEEEECT--TSSCEEEEECCCSTTCGGG
T ss_pred CCceEEEECC--CCCeEEEEecccccccccc
Confidence 9999999999 9999999999986666653
No 100
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.1e-32 Score=242.29 Aligned_cols=238 Identities=15% Similarity=0.147 Sum_probs=162.7
Q ss_pred CCCCCceEEEEEccCCCceE---EEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeec
Q 048511 1 MGGLDNKIHLYRGQRTGKFV---RACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQS 77 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~---~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~ 77 (351)
+|+.|++|+|||.+. ++.. .+..+.+|.+.|++|+|+|........++++|||+|.|++|+|||+.++...
T Consensus 106 s~~~d~~v~lw~~~~-~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~----- 179 (393)
T 4gq1_A 106 CVCQDNTVRLIITKN-ETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPI----- 179 (393)
T ss_dssp EEETTSCEEEEEEET-TEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEE-----
T ss_pred EEeCCCcEEEEECCC-CccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCcee-----
Confidence 478899999999998 5432 3445789999999999992111000027899999999999999999765432
Q ss_pred ccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC
Q 048511 78 TYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK 157 (351)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 157 (351)
..+.+|..+|.+++|+| .+..+ |++++.|++|++||+++
T Consensus 180 ------------------------------~~~~~~~~~v~~v~~~p-----~~~~~------l~~~~~d~~v~~wd~~t 218 (393)
T 4gq1_A 180 ------------------------------LAGYPLSSPGISVQFRP-----SNPNQ------LIVGERNGNIRIFDWTL 218 (393)
T ss_dssp ------------------------------EEEEECSSCEEEEEEET-----TEEEE------EEEEETTSEEEEEETTC
T ss_pred ------------------------------eeecCCCCCcEEEEECC-----CCCce------EEecCCCCEEEEEECCC
Confidence 22345888999999995 33457 99999999999999987
Q ss_pred CCcceEEEEE--------------------eccccccccceEEEEEc-CCCCEEEEEeeCCeEEEEEcccCcccCccccc
Q 048511 158 TTGIWMNVVT--------------------VGELSHSALGFYGGHWS-PDGRSILAHGYGGAFHLWRNVGVDIDNWQPQK 216 (351)
Q Consensus 158 ~~~~~~~~~~--------------------~~~~~~~~~~i~~i~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 216 (351)
+....... ......|...+.++.|+ |+++.+++++.|+++++||+..+. ...
T Consensus 219 --~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~-----~~~ 291 (393)
T 4gq1_A 219 --NLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN-----DYN 291 (393)
T ss_dssp --CC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------------
T ss_pred --CcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC-----CCc
Confidence 33221111 00123566778889886 799999999999999999997753 233
Q ss_pred ccccccccEEEE------------------Eeec--CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccc
Q 048511 217 VPSGHFAAVMDI------------------SWSR--SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHD 276 (351)
Q Consensus 217 ~~~~~~~~v~~v------------------~~sp--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (351)
.+..|...+..+ .|+| ++.++++|+.||.|++||+.++. ....+..|..+
T Consensus 292 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~----------~~~~~~~~~~~ 361 (393)
T 4gq1_A 292 EISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD----------SNSIPIQLGMP 361 (393)
T ss_dssp ------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT----------CCEEEEECSSC
T ss_pred eEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc----------EEEEecCCCCc
Confidence 333333333333 2333 33467788899999999998876 33344567788
Q ss_pred eeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511 277 INCVTIIQGKGNHRFVSGADEKVARVFEA 305 (351)
Q Consensus 277 i~~~~~~~~~~~~~l~s~~~dg~v~vw~~ 305 (351)
|++++|+| +|++||++++||. .+|++
T Consensus 362 V~svafsp--dG~~LA~as~~Gv-~lvrL 387 (393)
T 4gq1_A 362 IVDFCWHQ--DGSHLAIATEGSV-LLTRL 387 (393)
T ss_dssp EEEEEECT--TSSEEEEEESSEE-EEEEE
T ss_pred EEEEEEcC--CCCEEEEEeCCCe-EEEEE
Confidence 99999999 9999999988774 55553
No 101
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-31 Score=235.56 Aligned_cols=238 Identities=10% Similarity=0.043 Sum_probs=187.9
Q ss_pred ecCCceeEEEeeCCcccCCCCCccEE-EEeeCCCcEEEEecC--CCcccceeec-ccccceeeeEeeecCCeEEecCCce
Q 048511 27 GHTDWIRSLDFSLPVCTSGEAISILL-VSSSQDKVIRIWKLA--LRGSSANTQS-TYRKEVISLASYIEGPVLVAGSSSY 102 (351)
Q Consensus 27 ~h~~~V~~l~~~~~~~~~~~~~~~~l-~t~~~dg~i~iwd~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ 102 (351)
+|.+.|++++|+ +++++| ++++.||.|++||+. ++.....+.. .....+.+++|+|++..|++++.++
T Consensus 100 ~~~~~v~~~~~s--------~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g 171 (450)
T 2vdu_B 100 PIYSYIRNLRLT--------SDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFG 171 (450)
T ss_dssp CCCCCEEEEEEC--------TTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred ccCCceEEEEEc--------CCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCC
Confidence 344579999999 889886 899999999999998 6666554432 3356788999999999999998888
Q ss_pred eEEEEE------------eccccccceEEEEecCCCCCCCC---CcccCCCceeEEeecCCeEEEEeccCCCcceEEEEE
Q 048511 103 QVSVES------------LLIGHEDWVYSVQWEPPSTAPSD---GVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVT 167 (351)
Q Consensus 103 ~~~~~~------------~~~~h~~~v~~l~~~p~~~~~~~---~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 167 (351)
.+..+. .+.+|...|.+++|+ ++ +++ |++++.|+.|++||++. +..+..+.
T Consensus 172 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s------p~~~~~~~------l~s~~~d~~i~vwd~~~--~~~~~~~~ 237 (450)
T 2vdu_B 172 DVYSIDINSIPEEKFTQEPILGHVSMLTDVHLI------KDSDGHQF------IITSDRDEHIKISHYPQ--CFIVDKWL 237 (450)
T ss_dssp EEEEEETTSCCCSSCCCCCSEECSSCEEEEEEE------ECTTSCEE------EEEEETTSCEEEEEESC--TTCEEEEC
T ss_pred cEEEEecCCcccccccceeeecccCceEEEEEc------CCCCCCcE------EEEEcCCCcEEEEECCC--Cceeeeee
Confidence 776654 456789999999999 67 778 99999999999999998 65555432
Q ss_pred eccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc-------------------------ccc
Q 048511 168 VGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS-------------------------GHF 222 (351)
Q Consensus 168 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-------------------------~~~ 222 (351)
.+|...|.+++|+ ++++|++++.|+.|++||+++++ ++..+. ...
T Consensus 238 ----~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (450)
T 2vdu_B 238 ----FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGK-----NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE 307 (450)
T ss_dssp ----CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCC-----EEEEEECHHHHGGGCCTTSBC----------CBC
T ss_pred ----cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCc-----Eeeeecchhhhhhhhhhcccccccccccccccce
Confidence 3688899999999 99999999999999999998864 233332 233
Q ss_pred ccEEEEEeecCCCEEEEEe-CCCcEEEEcC--CCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecC---
Q 048511 223 AAVMDISWSRSSDYLLSVS-HDQTTRVFAP--WKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD--- 296 (351)
Q Consensus 223 ~~v~~v~~sp~~~~l~s~~-~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~--- 296 (351)
..|.+++|+|++++|++++ .|+.|+||++ .... .+..+..+..| ..|.+++|+| ++.++++++.
T Consensus 308 ~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~-------~l~~~~~~~~~-~~v~~~~~~~--~~~~v~~~~~~~~ 377 (450)
T 2vdu_B 308 FAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKG-------DLALKQIITFP-YNVISLSAHN--DEFQVTLDNKESS 377 (450)
T ss_dssp CCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTT-------CEEEEEEEECS-SCEEEEEEET--TEEEEEECCTTCC
T ss_pred EEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCC-------ceeeccEeccC-CceEEEEecC--CcEEEEEecccCC
Confidence 5689999999999999998 8999999999 4432 23355555566 6799999999 5544444443
Q ss_pred ---CCeEEEEecC
Q 048511 297 ---EKVARVFEAP 306 (351)
Q Consensus 297 ---dg~v~vw~~~ 306 (351)
+..|.+|.+.
T Consensus 378 ~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 378 GVQKNFAKFIEYN 390 (450)
T ss_dssp SSCCCSEEEEEEE
T ss_pred CCCCcceEEEEEE
Confidence 5568999864
No 102
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-31 Score=229.82 Aligned_cols=239 Identities=18% Similarity=0.213 Sum_probs=188.7
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc-cceeeccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS-SANTQSTY 79 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~-~~~~~~~~ 79 (351)
+|+.||.|+|||+.. +....+..+.+|.+.|++++|+ ++ .++++|++++.||.|++||+.++.. .......+
T Consensus 28 ~~~~dg~i~iw~~~~-~~~~~~~~~~~h~~~v~~~~~~----~~--~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 100 (379)
T 3jrp_A 28 TCSSDKTIKIFEVEG-ETHKLIDTLTGHEGPVWRVDWA----HP--KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVH 100 (379)
T ss_dssp EEETTSCEEEEEEET-TEEEEEEEECCCSSCEEEEEEC----CG--GGCSEEEEEETTSCEEEEEEETTEEEEEEEECCC
T ss_pred EEECCCcEEEEecCC-CcceeeeEecCCCCcEEEEEeC----CC--CCCCEEEEeccCCEEEEEEcCCCceeEeeeecCC
Confidence 467899999999986 5557788899999999999998 21 2389999999999999999998763 22233345
Q ss_pred ccceeeeEeeec--CCeEEecCCceeEEEEEe----------ccccccceEEEEecCCCCC-------CCCCcccCCCce
Q 048511 80 RKEVISLASYIE--GPVLVAGSSSYQVSVESL----------LIGHEDWVYSVQWEPPSTA-------PSDGVSCQQPSS 140 (351)
Q Consensus 80 ~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~----------~~~h~~~v~~l~~~p~~~~-------~~~~~~~~~~~~ 140 (351)
...+.+++|+++ +..++++..++.+.++.. +.+|...|.+++|+|.... .+++.+
T Consensus 101 ~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~------ 174 (379)
T 3jrp_A 101 SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK------ 174 (379)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCE------
T ss_pred CcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCE------
Confidence 678999999999 999999999998877653 4468889999999952100 005778
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCC---CCEEEEEeeCCeEEEEEcccCcccCcccccc
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD---GRSILAHGYGGAFHLWRNVGVDIDNWQPQKV 217 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 217 (351)
|++++.|+.|++||++.......... ....|...|.+++|+|+ +++|++++.||.|++||+++...........
T Consensus 175 l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 251 (379)
T 3jrp_A 175 FVTGGADNLVKIWKYNSDAQTYVLES---TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLK 251 (379)
T ss_dssp EEEEETTSCEEEEEEETTTTEEEEEE---EECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESS
T ss_pred EEEEeCCCeEEEEEecCCCcceeeEE---EEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeec
Confidence 99999999999999987332211111 13378889999999999 8999999999999999998864221123444
Q ss_pred cccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511 218 PSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 218 ~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
...|...|++++|+|++++|++++.||.|++|++....
T Consensus 252 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 252 EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp SSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred cccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 45588899999999999999999999999999997543
No 103
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.1e-30 Score=225.00 Aligned_cols=233 Identities=14% Similarity=0.207 Sum_probs=187.5
Q ss_pred CCCCCceEEEEEccCC-CceEEEEeeeecCCceeEEEeeCCcccCCCC--CccEEEEeeCCCcEEEEecCCCcc------
Q 048511 1 MGGLDNKIHLYRGQRT-GKFVRACELKGHTDWIRSLDFSLPVCTSGEA--ISILLVSSSQDKVIRIWKLALRGS------ 71 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~-~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~--~~~~l~t~~~dg~i~iwd~~~~~~------ 71 (351)
+|+.||+|++||+... ........+.+|...|++++|+ + ++++|++++.||+|++||+..+..
T Consensus 28 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 99 (351)
T 3f3f_A 28 TCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWA--------SPEYGRIIASASYDKTVKLWEEDPDQEECSGRR 99 (351)
T ss_dssp EEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEEC--------CGGGCSEEEEEETTSCEEEEEECTTSCTTSSCS
T ss_pred EeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEc--------CCCCCCEEEEEcCCCeEEEEecCCCcccccccC
Confidence 4788999999999861 2335677889999999999999 5 589999999999999999987642
Q ss_pred --cceeecccccceeeeEeeec--CCeEEecCCceeEEEEEec---------------------cccccceEEEEecCCC
Q 048511 72 --SANTQSTYRKEVISLASYIE--GPVLVAGSSSYQVSVESLL---------------------IGHEDWVYSVQWEPPS 126 (351)
Q Consensus 72 --~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~---------------------~~h~~~v~~l~~~p~~ 126 (351)
.......+...+.++.|+++ +..+++++.++.+.++... .+|...+.+++|+|..
T Consensus 100 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 179 (351)
T 3f3f_A 100 WNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSR 179 (351)
T ss_dssp EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCS
T ss_pred cceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCC
Confidence 12233345678899999999 9999999999999888742 1577889999999532
Q ss_pred CCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCC----CEEEEEeeCCeEEEE
Q 048511 127 TAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG----RSILAHGYGGAFHLW 202 (351)
Q Consensus 127 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~----~~l~~~~~dg~i~~~ 202 (351)
.++.+ |++++.|+.+.+|+... +...... ....|...|.+++|+|++ ++|++++.||.|++|
T Consensus 180 ---~~~~~------l~~~~~~~~~~~~~~~~--~~~~~~~---~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iw 245 (351)
T 3f3f_A 180 ---FSPEK------LAVSALEQAIIYQRGKD--GKLHVAA---KLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIF 245 (351)
T ss_dssp ---SSCCE------EEEEETTEEEEEEECTT--SCEEEEE---ECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEE
T ss_pred ---CCCcE------EEEecCCCcEEEEccCC--Cceeeee---ecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEE
Confidence 23677 99999999998888776 4332111 133788899999999998 899999999999999
Q ss_pred EcccCccc-----------------------------------------CcccccccccccccEEEEEeecCCCEEEEEe
Q 048511 203 RNVGVDID-----------------------------------------NWQPQKVPSGHFAAVMDISWSRSSDYLLSVS 241 (351)
Q Consensus 203 d~~~~~~~-----------------------------------------~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~ 241 (351)
|++..... ...++..+.+|...|++++|+|++++|++++
T Consensus 246 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 325 (351)
T 3f3f_A 246 KITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAG 325 (351)
T ss_dssp EEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEE
T ss_pred eCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEec
Confidence 99874210 1134566778999999999999999999999
Q ss_pred CCCcEEEEcCCCcc
Q 048511 242 HDQTTRVFAPWKNV 255 (351)
Q Consensus 242 ~dg~i~vwd~~~~~ 255 (351)
.||.|++||+..++
T Consensus 326 ~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 326 DDGKVRLWKATYSN 339 (351)
T ss_dssp TTSCEEEEEECTTS
T ss_pred CCCcEEEEecCcCc
Confidence 99999999998775
No 104
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.98 E-value=1.2e-30 Score=230.03 Aligned_cols=268 Identities=17% Similarity=0.232 Sum_probs=178.8
Q ss_pred CCCCCceEEEEEccCCCceEEEEee-----------eecCCceeEEEeeCCcccCCCC-CccEEEEeeCCCcEEEEecCC
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACEL-----------KGHTDWIRSLDFSLPVCTSGEA-ISILLVSSSQDKVIRIWKLAL 68 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~-----------~~h~~~V~~l~~~~~~~~~~~~-~~~~l~t~~~dg~i~iwd~~~ 68 (351)
+|+.||.|++||+.+ ++....... .+|...|.+++|+ + ++.+|++++.||.|++||+.+
T Consensus 61 ~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~l~s~~~d~~i~iwd~~~ 131 (408)
T 4a11_B 61 SGGSDGVIVLYDLEN-SSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWY--------PHDTGMFTSSSFDKTLKVWDTNT 131 (408)
T ss_dssp EEETTSCEEEEECCC-CSSSSCEEECEEEEECTTCTTCCSSCEEEEEEC--------TTCTTCEEEEETTSEEEEEETTT
T ss_pred EEcCCCeEEEEECCC-CcccceEeccccccccccccccCCCcEEEEEEc--------cCCCcEEEEEeCCCeEEEeeCCC
Confidence 477899999999987 432111111 2599999999999 6 678999999999999999998
Q ss_pred CcccceeecccccceeeeEeeec---CCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCc-ccC
Q 048511 69 RGSSANTQSTYRKEVISLASYIE---GPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGV-SCQ 136 (351)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~-~~~ 136 (351)
++...... ....+..+.+.+. +..++++..++.+.++. .+.+|...|.+++|+ +++. +
T Consensus 132 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~------~~~~~l-- 201 (408)
T 4a11_B 132 LQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWS------PRYDYI-- 201 (408)
T ss_dssp TEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEEC------SSCTTE--
T ss_pred Cccceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEEC------CCCCcE--
Confidence 77665544 3446777777774 45899998888887765 356799999999999 5655 6
Q ss_pred CCceeEEeecCCeEEEEeccCCCcceEEEEE----------eccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEccc
Q 048511 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVT----------VGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVG 206 (351)
Q Consensus 137 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----------~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~ 206 (351)
|++++.||.|++||++.... ....+. ......|...|.+++|+|++++|++++.|+.|++||+++
T Consensus 202 ----l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 202 ----LATASADSRVKLWDVRRASG-CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp ----EEEEETTSCEEEEETTCSSC-CSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ----EEEEcCCCcEEEEECCCCCc-ccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 88999999999999987321 222211 011136778899999999999999999999999999987
Q ss_pred Cccc------------------------------------------CcccccccccccccEEEEEeecCCCEEEEEeCCC
Q 048511 207 VDID------------------------------------------NWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQ 244 (351)
Q Consensus 207 ~~~~------------------------------------------~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg 244 (351)
++.. ...++..+.+|...|++++|+|++++|++++.||
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 356 (408)
T 4a11_B 277 GENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDC 356 (408)
T ss_dssp CCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred CccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCC
Confidence 5421 1133445667999999999999999999999999
Q ss_pred cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 245 TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 245 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
.|++||+.+.+ .+.....+. ....+.+ .....+.+.+.|+.+++|+.+
T Consensus 357 ~i~iw~~~~~~----------~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 357 NILAWVPSLYE----------PVPDDDETT---TKSQLNP-AFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp CEEEEEECC-----------------------------------------------------
T ss_pred eEEEEeCCCCC----------ccCCCCceE---ecccccc-ccceeecccCccCceeecCCc
Confidence 99999998876 222222111 1223333 134566778889999999865
No 105
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=9.7e-30 Score=225.50 Aligned_cols=218 Identities=20% Similarity=0.308 Sum_probs=185.9
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.||+|+|||+++ + ..+..+.+|...|.++.++ +.+|++|+.|+.+++||.............+.
T Consensus 164 sgs~Dg~v~iWd~~~-~--~~~~~~~~h~~~v~~~s~~----------~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~ 230 (420)
T 4gga_A 164 VGTSSAEVQLWDVQQ-Q--KRLRNMTSHSARVGSLSWN----------SYILSSGSRSGHIHHHDVRVAEHHVATLSGHS 230 (420)
T ss_dssp EEETTSCEEEEETTT-T--EEEEEECCCSSCEEEEEEE----------TTEEEEEETTSEEEEEETTSSSCEEEEEECCS
T ss_pred EEECCCeEEEEEcCC-C--cEEEEEeCCCCceEEEeeC----------CCEEEEEeCCCceeEeeecccceeeEEecccc
Confidence 478999999999998 7 5677899999999999887 67999999999999999988766655556667
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEe------------ccccccceEEEEecCCCCCCCCCcccCCCceeEE--eec
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESL------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILS--ASM 146 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s--~~~ 146 (351)
..+..+.+++++..++++..++.+.++.. ...|...|.+++|+| .+..+ +++ |+.
T Consensus 231 ~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p-----~~~~~------la~~~gs~ 299 (420)
T 4gga_A 231 QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP-----WQSNV------LATGGGTS 299 (420)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECT-----TCTTE------EEEEECTT
T ss_pred cceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCC-----CcccE------EEEEeecC
Confidence 78899999999999999999988877653 456888999999996 34444 555 457
Q ss_pred CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe--eCCeEEEEEcccCcccCccccccccccccc
Q 048511 147 DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG--YGGAFHLWRNVGVDIDNWQPQKVPSGHFAA 224 (351)
Q Consensus 147 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~ 224 (351)
|++|++||+++ +.....+. ....+.++.|+|+++.+++++ .|+.|++||+.+. +++..+.+|.+.
T Consensus 300 D~~I~iwd~~t--~~~~~~~~------~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~-----~~v~~l~gH~~~ 366 (420)
T 4gga_A 300 DRHIRIWNVCS--GACLSAVD------AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM-----AKVAELKGHTSR 366 (420)
T ss_dssp TCEEEEEETTT--TEEEEEEE------CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC-----CEEEEECCCSSC
T ss_pred CCEEEEEeCCc--cccceeec------cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC-----cEEEEEcCCCCC
Confidence 99999999998 77766654 345789999999999888765 6899999999886 568899999999
Q ss_pred EEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511 225 VMDISWSRSSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 225 v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
|++++|+|+|++|+||+.|++|+|||+....
T Consensus 367 V~~l~~spdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 367 VLSLTMSPDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp EEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred EEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 9999999999999999999999999997654
No 106
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=6.2e-30 Score=225.40 Aligned_cols=235 Identities=17% Similarity=0.259 Sum_probs=191.8
Q ss_pred eeecCCc--eeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCce
Q 048511 25 LKGHTDW--IRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSY 102 (351)
Q Consensus 25 ~~~h~~~--V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 102 (351)
..+|... +.++.|+ +..+++++.|+.|++||+.++.........+...+.+++|++++..++++..++
T Consensus 87 ~~~~~~~~~~~~~~~s----------~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 156 (401)
T 4aez_A 87 APGIIDDYYLNLLDWS----------NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNG 156 (401)
T ss_dssp CTTCCCCTTCBCEEEC----------TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCcCCceEEEEeec----------CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCC
Confidence 3355554 3445555 456888999999999999998877666665677899999999999999999888
Q ss_pred eEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccccc
Q 048511 103 QVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHS 174 (351)
Q Consensus 103 ~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 174 (351)
.+.++. .+.+|...|.+++|+ + ++ |++++.|+.|++||++.. ......+. .|
T Consensus 157 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~------~--~~------l~~~~~dg~i~i~d~~~~-~~~~~~~~-----~~ 216 (401)
T 4aez_A 157 LVDIYDVESQTKLRTMAGHQARVGCLSWN------R--HV------LSSGSRSGAIHHHDVRIA-NHQIGTLQ-----GH 216 (401)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEEE------T--TE------EEEEETTSEEEEEETTSS-SCEEEEEE-----CC
T ss_pred eEEEEECcCCeEEEEecCCCCceEEEEEC------C--CE------EEEEcCCCCEEEEecccC-cceeeEEc-----CC
Confidence 887664 466899999999997 2 36 999999999999999852 34444444 78
Q ss_pred ccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCC-EEEEEe--CCCcEEEEcC
Q 048511 175 ALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSD-YLLSVS--HDQTTRVFAP 251 (351)
Q Consensus 175 ~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~--~dg~i~vwd~ 251 (351)
...|.+++|+|++++|++++.|+.|++||+++. .++..+..|...|.+++|+|++. ++++++ .|+.|++||+
T Consensus 217 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-----~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~ 291 (401)
T 4aez_A 217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS-----IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNA 291 (401)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTCS-----SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEET
T ss_pred CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC-----CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEEC
Confidence 889999999999999999999999999999986 55777888999999999999764 556654 7999999999
Q ss_pred CCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEE--ecCCCeEEEEecCc
Q 048511 252 WKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVS--GADEKVARVFEAPL 307 (351)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s--~~~dg~v~vw~~~~ 307 (351)
.++. .+..+ .+...|.+++|+| ++.+|++ |+.||.|++|++..
T Consensus 292 ~~~~----------~~~~~-~~~~~v~~~~~s~--~~~~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 292 ATGA----------RVNTV-DAGSQVTSLIWSP--HSKEIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp TTCC----------EEEEE-ECSSCEEEEEECS--SSSEEEEEECTTTCEEEEEEEET
T ss_pred CCCC----------EEEEE-eCCCcEEEEEECC--CCCeEEEEeecCCCcEEEEecCC
Confidence 8876 33333 2556799999999 8999988 66999999999863
No 107
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.7e-30 Score=248.39 Aligned_cols=248 Identities=11% Similarity=0.020 Sum_probs=185.5
Q ss_pred eecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc--eee--------cccccceeeeEeeecCCeE
Q 048511 26 KGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA--NTQ--------STYRKEVISLASYIEGPVL 95 (351)
Q Consensus 26 ~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~--~~~--------~~~~~~~~~~~~~~~~~~l 95 (351)
.+|...+.+++|+ +++++|+||+.|++|++||+.++.... ... ..+...+.+++|+|+++.|
T Consensus 432 ~G~~~~v~sv~~s--------pdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~L 503 (902)
T 2oaj_A 432 KGGVRTKRQKLPA--------EYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLEL 503 (902)
T ss_dssp CCSBCCCCCCCCC--------SEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEE
T ss_pred cCCcCCCCccccc--------ccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeE
Confidence 3444444455555 789999999999999999998874321 011 1445679999999999999
Q ss_pred EecCCceeEEEEE-----------------------------------------------------eccccccceEEEEe
Q 048511 96 VAGSSSYQVSVES-----------------------------------------------------LLIGHEDWVYSVQW 122 (351)
Q Consensus 96 ~~~~~~~~~~~~~-----------------------------------------------------~~~~h~~~v~~l~~ 122 (351)
++++.++.+++|. .+.+|.+.|++++|
T Consensus 504 Asgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svaf 583 (902)
T 2oaj_A 504 AVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINN 583 (902)
T ss_dssp EEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEE
T ss_pred EEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEe
Confidence 9999888876654 34569999999999
Q ss_pred cCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccc-ccccceEEEEEc-----CCC---CEEEEE
Q 048511 123 EPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELS-HSALGFYGGHWS-----PDG---RSILAH 193 (351)
Q Consensus 123 ~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~-----~~~---~~l~~~ 193 (351)
+ ++| + ||+|+.|++|+|||++. +..+....+.... +|...|++++|+ ||| ++|+++
T Consensus 584 S------pdG-~------lAsgs~D~tv~lwd~~~--~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sg 648 (902)
T 2oaj_A 584 S------NIG-F------VGIAYAAGSLMLIDRRG--PAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCG 648 (902)
T ss_dssp C------BTS-E------EEEEETTSEEEEEETTT--TEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEE
T ss_pred c------CCc-E------EEEEeCCCcEEEEECCC--CeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEE
Confidence 9 799 9 99999999999999987 5554433333443 788999999999 885 899999
Q ss_pred eeCCeEEEEEc---ccCcccCcccccccccc-----cccEEEEE-ee----------------------cCCCEEEEEeC
Q 048511 194 GYGGAFHLWRN---VGVDIDNWQPQKVPSGH-----FAAVMDIS-WS----------------------RSSDYLLSVSH 242 (351)
Q Consensus 194 ~~dg~i~~~d~---~~~~~~~~~~~~~~~~~-----~~~v~~v~-~s----------------------p~~~~l~s~~~ 242 (351)
+.|++|++||+ .++ +....+.+| .+.|..++ |+ +++.+|+++
T Consensus 649 s~D~tv~~wd~~p~~~g-----~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-- 721 (902)
T 2oaj_A 649 TDMGEVITYKILPASGG-----KFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-- 721 (902)
T ss_dssp ETTSEEEEEEEEECGGG-----CEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--
T ss_pred ecCCcEEEEEEecCCCC-----cEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--
Confidence 99999999999 555 344555555 46777776 65 444444443
Q ss_pred CCcEEEEcCCCccccccCccceEEeccccccccceeEE---E------EeeeCCCcEEEEecCCCeEEEEecC-chhhhc
Q 048511 243 DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCV---T------IIQGKGNHRFVSGADEKVARVFEAP-LSFLKT 312 (351)
Q Consensus 243 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~------~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~ 312 (351)
+..|+||++.+++ ...+...|...+..+ . |++ ++..|++++.||.|++|+++ .+.+.+
T Consensus 722 ~~~ir~~~~~~~k----------~~~k~~~~~~~~~~v~~~~~~~~~~~~~--~~~~l~~~~~~g~i~~~s~p~l~~~~~ 789 (902)
T 2oaj_A 722 FDDIRLITLGKSK----------STHKGFKYPLAATGLSYISTVEKNNDRK--NLTVIITLEINGHLRVFTIPDFKEQMS 789 (902)
T ss_dssp SSEEEEECTTCCC----------EEEEECSSCEEEEEEEEEEEECSSSCEE--EEEEEEEEETTSEEEEEETTTCCEEEE
T ss_pred ccceEEEeCcccc----------ceeeEcccceeeeEEEEEEecccccccc--CceEEEEEeCCCcEEEEECcchHHHhh
Confidence 7799999998876 333333444445555 5 667 78999999999999999987 666666
Q ss_pred eee
Q 048511 313 LNH 315 (351)
Q Consensus 313 ~~~ 315 (351)
+.-
T Consensus 790 ~~~ 792 (902)
T 2oaj_A 790 EHI 792 (902)
T ss_dssp EEC
T ss_pred ccC
Confidence 543
No 108
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.1e-30 Score=244.51 Aligned_cols=216 Identities=18% Similarity=0.280 Sum_probs=178.3
Q ss_pred EeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCce
Q 048511 23 CELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSY 102 (351)
Q Consensus 23 ~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 102 (351)
..+.+|.+.|++++|+ +++++|++|+.||+|++||+.....
T Consensus 3 ~~l~gH~~~V~~l~~s--------~dg~~latg~~dg~I~vwd~~~~~~------------------------------- 43 (753)
T 3jro_A 3 VIANAHNELIHDAVLD--------YYGKRLATCSSDKTIKIFEVEGETH------------------------------- 43 (753)
T ss_dssp -----CCCCEEEECCC--------SSSCCEEEEETTTEEEEEEEETTEE-------------------------------
T ss_pred eecccCcceeEEEEEC--------CCCCeEEEEECCCcEEEEecCCCCC-------------------------------
Confidence 4678999999999999 8899999999999999999874321
Q ss_pred eEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcc--eEEEEEeccccccccceEE
Q 048511 103 QVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGI--WMNVVTVGELSHSALGFYG 180 (351)
Q Consensus 103 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~i~~ 180 (351)
.....+.+|.++|++++|+|. .++++ |++|+.||.|++||+.. +. ....+ ..|...|.+
T Consensus 44 --~~~~~l~~h~~~V~~l~~s~~----~~~~~------l~s~s~Dg~I~vwd~~~--~~~~~~~~~-----~~h~~~V~~ 104 (753)
T 3jro_A 44 --KLIDTLTGHEGPVWRVDWAHP----KFGTI------LASCSYDGKVLIWKEEN--GRWSQIAVH-----AVHSASVNS 104 (753)
T ss_dssp --EEEEEECCCSSCEEEEEECCT----TSCSE------EEEEETTSCEEEEEEET--TEEEEEEEE-----CCCSSCEEE
T ss_pred --ccceeccCCcCceEEEEecCC----CCCCE------EEEEeCCCeEEEEECCC--Ccccccccc-----cCCCCCeEE
Confidence 223456789999999999941 12788 99999999999999998 54 33333 378889999
Q ss_pred EEEcCC--CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec-------------CCCEEEEEeCCCc
Q 048511 181 GHWSPD--GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR-------------SSDYLLSVSHDQT 245 (351)
Q Consensus 181 i~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-------------~~~~l~s~~~dg~ 245 (351)
++|+|+ ++.+++++.||.|++||+++... .....+.+|...|.+++|+| ++.+|++|+.||.
T Consensus 105 v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~---~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~ 181 (753)
T 3jro_A 105 VQWAPHEYGPLLLVASSDGKVSVVEFKENGT---TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181 (753)
T ss_dssp EEECCGGGCSEEEEEETTSEEEEEECCSSSC---CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSC
T ss_pred EEECCCCCCCEEEEEeCCCcEEEEEeecCCC---cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCe
Confidence 999999 99999999999999999987632 33456678999999999999 5899999999999
Q ss_pred EEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCC---CcEEEEecCCCeEEEEecCc
Q 048511 246 TRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKG---NHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 246 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~l~s~~~dg~v~vw~~~~ 307 (351)
|++||++.+. ..+.....+.+|...|++++|+| + +.+|++|+.||.|++||+..
T Consensus 182 I~iwd~~~~~------~~~~~~~~~~~h~~~V~~l~~sp--~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 182 VKIWKYNSDA------QTYVLESTLEGHSDWVRDVAWSP--TVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp EEEEEEETTT------TEEEEEEEECCCSSCEEEEEECC--CCSSSEEEEEEESSSCEEEEEESS
T ss_pred EEEEeccCCc------ccceeeeeecCCCCcEEEEEecc--CCCCCCEEEEEecCCEEEEecCCC
Confidence 9999998765 23345666778999999999999 7 89999999999999999873
No 109
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.1e-28 Score=216.57 Aligned_cols=262 Identities=14% Similarity=0.065 Sum_probs=201.9
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEE-EEeeCCCcEEEEecCCCcccceeeccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILL-VSSSQDKVIRIWKLALRGSSANTQSTY 79 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l-~t~~~dg~i~iwd~~~~~~~~~~~~~~ 79 (351)
+++.|++|++||+.+ + +.+..+..|. .+.+++|+ +++++| ++++.|++|++||+.+++........
T Consensus 7 s~~~d~~v~v~d~~~-~--~~~~~~~~~~-~~~~~~~s--------~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~- 73 (391)
T 1l0q_A 7 ANSESDNISVIDVTS-N--KVTATIPVGS-NPMGAVIS--------PDGTKVYVANAHSNDVSIIDTATNNVIATVPAG- 73 (391)
T ss_dssp EETTTTEEEEEETTT-T--EEEEEEECSS-SEEEEEEC--------TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-
T ss_pred EcCCCCEEEEEECCC-C--eEEEEeecCC-CcceEEEC--------CCCCEEEEECCCCCeEEEEECCCCeEEEEEECC-
Confidence 467899999999998 7 4555677665 58999999 788876 67779999999999988776555433
Q ss_pred ccceeeeEeeecCCeEEe-cCCceeEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCcee-EEeecCCe
Q 048511 80 RKEVISLASYIEGPVLVA-GSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSI-LSASMDKT 149 (351)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l-~s~~~d~~ 149 (351)
..+.+++|+|+++.+++ +..++.+.++.. +. +...+.+++|+ ++++. | ++++.|+.
T Consensus 74 -~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s------~dg~~------l~~~~~~~~~ 139 (391)
T 1l0q_A 74 -SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-TGKSPLGLALS------PDGKK------LYVTNNGDKT 139 (391)
T ss_dssp -SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEEC------TTSSE------EEEEETTTTE
T ss_pred -CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-CCCCcceEEEC------CCCCE------EEEEeCCCCE
Confidence 37889999999997755 445577766543 22 34568999999 67776 5 78888999
Q ss_pred EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEE-EEEeeCCeEEEEEcccCcccCcccccccccccccEEEE
Q 048511 150 MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSI-LAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDI 228 (351)
Q Consensus 150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v 228 (351)
|++||+++ ++....+. . ...+.+++|+|+++++ ++++.++.|++||+++++ ....+. +...+.++
T Consensus 140 v~~~d~~~--~~~~~~~~-----~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~-----~~~~~~-~~~~~~~~ 205 (391)
T 1l0q_A 140 VSVINTVT--KAVINTVS-----V-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS-----VIDTVK-VEAAPSGI 205 (391)
T ss_dssp EEEEETTT--TEEEEEEE-----C-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-----EEEEEE-CSSEEEEE
T ss_pred EEEEECCC--CcEEEEEe-----c-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe-----EEEEEe-cCCCccce
Confidence 99999998 66666554 2 2457899999999987 566788999999998863 344443 55678999
Q ss_pred EeecCCCEEEEEe---CCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEE-EEecCCCeEEEEe
Q 048511 229 SWSRSSDYLLSVS---HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRF-VSGADEKVARVFE 304 (351)
Q Consensus 229 ~~sp~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~dg~v~vw~ 304 (351)
+|+|++++|++++ .++.|++||+.+++ .+..+..+. .+.+++|+| ++++| ++++.|+.|++||
T Consensus 206 ~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~----------~~~~~~~~~-~~~~~~~s~--dg~~l~~s~~~d~~v~v~d 272 (391)
T 1l0q_A 206 AVNPEGTKAYVTNVDKYFNTVSMIDTGTNK----------ITARIPVGP-DPAGIAVTP--DGKKVYVALSFXNTVSVID 272 (391)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEETTTTE----------EEEEEECCS-SEEEEEECT--TSSEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEecCcCCCcEEEEECCCCe----------EEEEEecCC-CccEEEEcc--CCCEEEEEcCCCCEEEEEE
Confidence 9999999998887 68999999998776 333333343 478999999 78766 7778999999999
Q ss_pred cC-chhhhceeec
Q 048511 305 AP-LSFLKTLNHA 316 (351)
Q Consensus 305 ~~-~~~~~~~~~~ 316 (351)
+. ++.+..+..+
T Consensus 273 ~~~~~~~~~~~~~ 285 (391)
T 1l0q_A 273 TATNTITATMAVG 285 (391)
T ss_dssp TTTTEEEEEEECS
T ss_pred CCCCcEEEEEECC
Confidence 87 6666666543
No 110
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=8.6e-30 Score=221.43 Aligned_cols=188 Identities=12% Similarity=0.120 Sum_probs=151.5
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK 81 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~ 81 (351)
|+.|++|+|||+.+ + .++..+. |.+.|++|+|+ |++++|++++.| .+++|+..++.....
T Consensus 153 ~~~d~~i~iwd~~~-~--~~~~~~~-~~~~V~~v~fs--------pdg~~l~s~s~~-~~~~~~~~~~~~~~~------- 212 (365)
T 4h5i_A 153 SKVPAIMRIIDPSD-L--TEKFEIE-TRGEVKDLHFS--------TDGKVVAYITGS-SLEVISTVTGSCIAR------- 212 (365)
T ss_dssp SCSSCEEEEEETTT-T--EEEEEEE-CSSCCCEEEEC--------TTSSEEEEECSS-CEEEEETTTCCEEEE-------
T ss_pred CCCCCEEEEeECCC-C--cEEEEeC-CCCceEEEEEc--------cCCceEEeccce-eEEEEEeccCcceee-------
Confidence 56899999999998 6 4455554 78899999999 889999999855 566777665543321
Q ss_pred ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCC----eEEEEeccC
Q 048511 82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDK----TMMIWQPEK 157 (351)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~----~i~iwd~~~ 157 (351)
....+|...|.+++|+ +++.. +++++.|+ .+++||+..
T Consensus 213 --------------------------~~~~~~~~~v~~v~fs------pdg~~------l~~~s~d~~~~~~i~~~~~~~ 254 (365)
T 4h5i_A 213 --------------------------KTDFDKNWSLSKINFI------ADDTV------LIAASLKKGKGIVLTKISIKS 254 (365)
T ss_dssp --------------------------ECCCCTTEEEEEEEEE------ETTEE------EEEEEESSSCCEEEEEEEEET
T ss_pred --------------------------eecCCCCCCEEEEEEc------CCCCE------EEEEecCCcceeEEeeccccc
Confidence 2345688899999999 78888 99999887 688899876
Q ss_pred CCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccc-cccccccEEEEEeecCCCE
Q 048511 158 TTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKV-PSGHFAAVMDISWSRSSDY 236 (351)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~~~~~v~~v~~sp~~~~ 236 (351)
....... ......|...|++++|+|++++|++|+.|++|+|||++++ +++.. +.+|...|++|+|+|||++
T Consensus 255 ~~~~~~~---~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~-----~~~~~~~~gH~~~V~~v~fSpdg~~ 326 (365)
T 4h5i_A 255 GNTSVLR---SKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL-----SMSKIFKQAHSFAITEVTISPDSTY 326 (365)
T ss_dssp TEEEEEE---EEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT-----EEEEEETTSSSSCEEEEEECTTSCE
T ss_pred ceeccee---eeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC-----cEEEEecCcccCCEEEEEECCCCCE
Confidence 3222221 2223478889999999999999999999999999999987 45655 5789999999999999999
Q ss_pred EEEEeCCCcEEEEcCCCcc
Q 048511 237 LLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 237 l~s~~~dg~i~vwd~~~~~ 255 (351)
|++++.|++|+|||+....
T Consensus 327 laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 327 VASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp EEEEETTSEEEEEECCTTT
T ss_pred EEEEeCCCeEEEEEcCCCC
Confidence 9999999999999996543
No 111
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=1.7e-29 Score=224.92 Aligned_cols=229 Identities=18% Similarity=0.270 Sum_probs=189.9
Q ss_pred eeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCcee
Q 048511 24 ELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQ 103 (351)
Q Consensus 24 ~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 103 (351)
...+|...|+++.+. +++|++|+.||+|++||+.+++...... .+...+.++.+ ++..+++++.++.
T Consensus 128 ~~~~~~~~v~~~~~d----------~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~sg~~dg~ 194 (435)
T 1p22_A 128 CRSETSKGVYCLQYD----------DQKIVSGLRDNTIKIWDKNTLECKRILT-GHTGSVLCLQY--DERVIITGSSDST 194 (435)
T ss_dssp CCCSSCCCEEEEECC----------SSEEEEEESSSCEEEEESSSCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETTSC
T ss_pred cccCCCCcEEEEEEC----------CCEEEEEeCCCeEEEEeCCCCeEEEEEc-CCCCcEEEEEE--CCCEEEEEcCCCe
Confidence 344667789988876 7899999999999999999877654443 45567778877 8899999999998
Q ss_pred EEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc
Q 048511 104 VSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA 175 (351)
Q Consensus 104 ~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 175 (351)
+.++. .+.+|...|.+++|++ .. +++|+.|+.|++||++. +....... ....|.
T Consensus 195 i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--------~~------l~s~s~dg~i~vwd~~~--~~~~~~~~--~~~~~~ 256 (435)
T 1p22_A 195 VRVWDVNTGEMLNTLIHHCEAVLHLRFNN--------GM------MVTCSKDRSIAVWDMAS--PTDITLRR--VLVGHR 256 (435)
T ss_dssp EEEEESSSCCEEEEECCCCSCEEEEECCT--------TE------EEEEETTSCEEEEECSS--SSCCEEEE--EECCCS
T ss_pred EEEEECCCCcEEEEEcCCCCcEEEEEEcC--------CE------EEEeeCCCcEEEEeCCC--CCCceeee--EecCCC
Confidence 87765 4667999999999982 25 99999999999999998 43332111 123788
Q ss_pred cceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511 176 LGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 176 ~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
..|.+++| +++++++++.||.|++||++++ .++..+.+|...|.+++|+ +.+|++|+.||.|++||++++.
T Consensus 257 ~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~ 327 (435)
T 1p22_A 257 AAVNVVDF--DDKYIVSASGDRTIKVWNTSTC-----EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGA 327 (435)
T ss_dssp SCEEEEEE--ETTEEEEEETTSEEEEEETTTC-----CEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCC
T ss_pred CcEEEEEe--CCCEEEEEeCCCeEEEEECCcC-----cEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCC
Confidence 89999999 7889999999999999999987 5678888999999999984 6799999999999999998876
Q ss_pred ccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 256 ASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
.+..+.+|...|++++| ++.+|++|+.||.|++||+.
T Consensus 328 ----------~~~~~~~h~~~v~~~~~----~~~~l~sg~~dg~i~vwd~~ 364 (435)
T 1p22_A 328 ----------CLRVLEGHEELVRCIRF----DNKRIVSGAYDGKIKVWDLV 364 (435)
T ss_dssp ----------EEEEECCCSSCEEEEEC----CSSEEEEEETTSCEEEEEHH
T ss_pred ----------EEEEEeCCcCcEEEEEe----cCCEEEEEeCCCcEEEEECC
Confidence 56666789999999998 46899999999999999986
No 112
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.1e-30 Score=226.32 Aligned_cols=244 Identities=8% Similarity=-0.027 Sum_probs=182.2
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.|++|+ |... + ..+.+|...|++|+|+ |+| .++++.+|+..... .....+.
T Consensus 32 Sas~D~TV~--d~~~-~-----~~l~gh~~~v~~V~Fs--------Pdg-------~~~~~~~~~~~~~~---~~~~~~~ 85 (588)
T 2j04_A 32 TTFPDISIG--QPKY-A-----KDINCNSKNLFHVKEF--------PLE-------FENKLDFELAQQNG---LLNSQPV 85 (588)
T ss_dssp ECSSSEEEE--EECC-C-----SCCSSBGGGTEEEEEE--------CCC-------CCCTTTTSCCCSSC---SSTTSCS
T ss_pred EEcCCceee--cccc-c-----ceecCCCccEEEEEEC--------CCC-------CcceEEEEeCCCce---EeecCCC
Confidence 356666666 5443 2 2335677777777777 545 34444444433222 2221225
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEE------ecccccc-----ceEEEEecCCCCCCCCCcccCCCceeEEeecCCe
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVES------LLIGHED-----WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT 149 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~h~~-----~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~ 149 (351)
..+.+++|+|+|..+++++.++.+.+|. .+. |.. .|.+++|+ |||++ |++|+.||+
T Consensus 86 ~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafS------PDG~~------LAsgs~DGt 152 (588)
T 2j04_A 86 CYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWN------PIESS------IVVGNEDGE 152 (588)
T ss_dssp CCEEEEEECSSSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEEEC------SSSSC------EEEEETTSE
T ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEEEEEEc------CCCCE------EEEEcCCCE
Confidence 6899999999999999999999998886 245 655 49999999 79999 999999999
Q ss_pred EEEEeccCCCcc-------eEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccc-ccc
Q 048511 150 MMIWQPEKTTGI-------WMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP-SGH 221 (351)
Q Consensus 150 i~iwd~~~~~~~-------~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~~ 221 (351)
|+|||+.. +. .+.++... ..+|...|.+++|+|++ +++++.|++|++||+.++... ....++ .+|
T Consensus 153 VkIWd~~~--~~l~~~~~i~l~ti~~~-~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~--~~~~tL~~~h 225 (588)
T 2j04_A 153 LQFFSIRK--NSENTPEFYFESSIRLS-DAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ--PVSRMIQNAS 225 (588)
T ss_dssp EEEEECCC--CTTTCCCCEEEEEEECS-CTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC--CCEEEEECCC
T ss_pred EEEEECCC--Cccccccceeeeeeecc-cccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc--cceeeecccc
Confidence 99999998 43 23444322 23577899999999999 888999999999999886410 122345 478
Q ss_pred cccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEE--eeeCCCcEEEEecCCCe
Q 048511 222 FAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTI--IQGKGNHRFVSGADEKV 299 (351)
Q Consensus 222 ~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~l~s~~~dg~ 299 (351)
...|.+++|+ +++|++++ ++.|++||+.++.. ..... +|...++.++| +| ++..|+++++||.
T Consensus 226 ~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~---------~~~~~-gh~~~V~~va~~~s~--d~~~La~a~edG~ 290 (588)
T 2j04_A 226 RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSI---------SSLKT-GSLENFHIIPLNHEK--ESTILLMSNKTSY 290 (588)
T ss_dssp SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEE---------EEEEC-SCCSCCCEEEETTCS--SCEEEEECSSCEE
T ss_pred cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeE---------EEEEc-CCCceEEEEEeeeCC--CCCEEEEEcCCCC
Confidence 8899999999 58899887 69999999988761 12222 68899999999 98 8999999999999
Q ss_pred EEEEecC
Q 048511 300 ARVFEAP 306 (351)
Q Consensus 300 v~vw~~~ 306 (351)
++|..+
T Consensus 291 -klw~~d 296 (588)
T 2j04_A 291 -KVLLED 296 (588)
T ss_dssp -EEEESS
T ss_pred -EEEeec
Confidence 999975
No 113
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=4.8e-29 Score=216.00 Aligned_cols=273 Identities=9% Similarity=0.013 Sum_probs=176.1
Q ss_pred EEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEee
Q 048511 10 LYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASY 89 (351)
Q Consensus 10 vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 89 (351)
||++.. . ..+..+.+|.+.|++++|+ +++++|++|+.|+ +++|++.+......... ..+..+.+.
T Consensus 3 i~s~~~-~--~~~~~~~~h~~~V~~v~fs--------~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~---~~~~~~~~~ 67 (355)
T 3vu4_A 3 LGSMIT-R--NPIVPENHVSNPVTDYEFN--------QDQSCLILSTLKS-FEIYNVHPVAHIMSQEM---RHLSKVRML 67 (355)
T ss_dssp -------------------CCCCCEEEEC--------TTSSEEEEECSSE-EEEEEETTEEEEEEEEC---SCCCEEEEC
T ss_pred cccccc-c--CCccccccCCCceEEEEEC--------CCCCEEEEEcCCE-EEEEecCCcceeeeeec---CCeEEEEEc
Confidence 455544 3 3455778999999999999 8899999998775 78999887654433221 245566777
Q ss_pred ecCCeE-EecCCceeEEEEEecc-------ccccceEEEEecCCCCCC-----------CCC-cc-c----------CCC
Q 048511 90 IEGPVL-VAGSSSYQVSVESLLI-------GHEDWVYSVQWEPPSTAP-----------SDG-VS-C----------QQP 138 (351)
Q Consensus 90 ~~~~~l-~~~~~~~~~~~~~~~~-------~h~~~v~~l~~~p~~~~~-----------~~~-~~-~----------~~~ 138 (351)
+++..+ ++++.+..+++|.... .|...|.++.+++..... .++ +. . -.+
T Consensus 68 ~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~ 147 (355)
T 3vu4_A 68 HRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSN 147 (355)
T ss_dssp TTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEET
T ss_pred CCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEc
Confidence 777766 4566667777765422 256678888887421000 000 00 0 000
Q ss_pred ceeEE--eecCCeEEEEeccCCCcceEE----------EEE-eccccccccceEEEEEcCCCCEEEEEeeCCe-EEEEEc
Q 048511 139 SSILS--ASMDKTMMIWQPEKTTGIWMN----------VVT-VGELSHSALGFYGGHWSPDGRSILAHGYGGA-FHLWRN 204 (351)
Q Consensus 139 ~~l~s--~~~d~~i~iwd~~~~~~~~~~----------~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~-i~~~d~ 204 (351)
.+++. |+.||.|++||++. +.... ... ...+..|...|.+++|+|++++|++++.|++ |++||+
T Consensus 148 ~~la~~sg~~~g~v~iwd~~~--~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~ 225 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQS--SGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKT 225 (355)
T ss_dssp TEEEEEESSCTTCEEEEECCC--------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEET
T ss_pred cEEEEeCCCcCcEEEEEECCC--CCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 12343 57888899998886 22000 000 1123488999999999999999999999998 999999
Q ss_pred ccCcccCcccccccc-c-ccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccC-ccc----------e--EEecc
Q 048511 205 VGVDIDNWQPQKVPS-G-HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMG-ENS----------W--HEVAR 269 (351)
Q Consensus 205 ~~~~~~~~~~~~~~~-~-~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~----------~--~~~~~ 269 (351)
+++ +++..+. + |...|.+++|+|++++|++++.|++|++||++........ ... | .....
T Consensus 226 ~~~-----~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (355)
T 3vu4_A 226 EDG-----VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKL 300 (355)
T ss_dssp TTC-----CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEEC
T ss_pred CCC-----cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEe
Confidence 987 4567776 5 9999999999999999999999999999999765421100 000 0 00001
Q ss_pred ccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 270 PQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 270 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
..........++|++ ++.+|++++.||.+++|++.
T Consensus 301 ~~~~~~~~~~~a~~~--d~~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 301 SVDKHVRGCKIAWIS--ESSLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp CCCTTCCCCEEEESS--SSEEEEEETTTTEEEEEEEE
T ss_pred ccCCCCCceEEEEeC--CCCEEEEEeCCCeEEEEEEE
Confidence 111222347789999 89999999999999999975
No 114
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.9e-29 Score=222.46 Aligned_cols=237 Identities=12% Similarity=0.117 Sum_probs=175.7
Q ss_pred eecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEE
Q 048511 26 KGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVS 105 (351)
Q Consensus 26 ~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 105 (351)
+.-...|.+|+|+ +||+++||++.|++|+ |....+.+ ..+...+.+++|+|+|. +..+.
T Consensus 12 ~~~~~~v~sv~~S--------pDG~~iASas~D~TV~--d~~~~~~l----~gh~~~v~~V~FsPdg~-------~~~~~ 70 (588)
T 2j04_A 12 KEFEDWKNNLTWA--------RDGTLYLTTFPDISIG--QPKYAKDI----NCNSKNLFHVKEFPLEF-------ENKLD 70 (588)
T ss_dssp CCCSSSSCCEEEC--------TTSCEEEECSSSEEEE--EECCCSCC----SSBGGGTEEEEEECCCC-------CCTTT
T ss_pred hHhhccEEEEEEC--------CCCCEEEEEcCCceee--ccccccee----cCCCccEEEEEECCCCC-------cceEE
Confidence 3456799999999 8999999999999999 75554433 35778999999999992 11111
Q ss_pred EE-----Eecc-ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceE
Q 048511 106 VE-----SLLI-GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFY 179 (351)
Q Consensus 106 ~~-----~~~~-~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~ 179 (351)
++ ..+. .|...|.+++|+ |+|.. ||+++.||.|++||.+. .+..+. .........+.
T Consensus 71 ~~~~~~~~~~~~~~~~~V~~vawS------PdG~~------LAs~s~dg~V~iwd~~~----~l~~l~-~~~~~~~~sv~ 133 (588)
T 2j04_A 71 FELAQQNGLLNSQPVCYPRVCKPS------PIDDW------MAVLSNNGNVSVFKDNK----MLTNLD-SKGNLSSRTYH 133 (588)
T ss_dssp TSCCCSSCSSTTSCSCCEEEEEEC------SSSSC------EEEEETTSCEEEEETTE----EEEECC-CSSCSTTTCEE
T ss_pred EEeCCCceEeecCCCCcEEEEEEC------CCCCE------EEEEeCCCcEEEEeCCc----eeeecc-CCCccccccEE
Confidence 11 1122 567889999999 79999 99999999999999543 222222 11111123599
Q ss_pred EEEEcCCCCEEEEEeeCCeEEEEEcccCcccC--ccccccc----ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCC
Q 048511 180 GGHWSPDGRSILAHGYGGAFHLWRNVGVDIDN--WQPQKVP----SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWK 253 (351)
Q Consensus 180 ~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~~----~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~ 253 (351)
+++|+|+|++|++|+.||+|++||+.++.... +..+.++ .+|...|.+++|+|+| +++++.|++|++||+..
T Consensus 134 svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~ 211 (588)
T 2j04_A 134 CFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSA 211 (588)
T ss_dssp EEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCS
T ss_pred EEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCC
Confidence 99999999999999999999999998863210 0123454 6788899999999999 78888999999999977
Q ss_pred ccccccCccceEEeccc-cccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhcee
Q 048511 254 NVASLMGENSWHEVARP-QVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLN 314 (351)
Q Consensus 254 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 314 (351)
+... .....+ .+|...|.+++|+ ++.||+++ ++.|++||+.+..+..+.
T Consensus 212 ~~~~-------~~~~tL~~~h~~~V~svaFs----g~~LASa~-~~tIkLWd~~~~~~~~~~ 261 (588)
T 2j04_A 212 SSHQ-------PVSRMIQNASRRKITDLKIV----DYKVVLTC-PGYVHKIDLKNYSISSLK 261 (588)
T ss_dssp SSSC-------CCEEEEECCCSSCCCCEEEE----TTEEEEEC-SSEEEEEETTTTEEEEEE
T ss_pred Cccc-------cceeeecccccCcEEEEEEE----CCEEEEEe-CCeEEEEECCCCeEEEEE
Confidence 6520 011122 2677789999997 47888887 699999999866554444
No 115
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=7.5e-29 Score=218.54 Aligned_cols=246 Identities=15% Similarity=0.141 Sum_probs=192.1
Q ss_pred ceeEEEeeCCcccCCCCCcc-EEEEeeCCCcEEEEecCCCccc---ceeecccccceeeeEeee-cCCeEEecCCceeEE
Q 048511 31 WIRSLDFSLPVCTSGEAISI-LLVSSSQDKVIRIWKLALRGSS---ANTQSTYRKEVISLASYI-EGPVLVAGSSSYQVS 105 (351)
Q Consensus 31 ~V~~l~~~~~~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~ 105 (351)
....++++ ++.. ++++++.||.|+||++...... ......+...+.+++|+| ++.++++++.++.+.
T Consensus 36 ~~~~~~~~--------~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~ 107 (402)
T 2aq5_A 36 DSGFCAVN--------PKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVM 107 (402)
T ss_dssp SSCSEEEC--------SSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEE
T ss_pred CCCcEEEC--------CCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEE
Confidence 34457777 4443 4456789999999999765332 222345677899999999 999999999999888
Q ss_pred EEEe---------------ccccccceEEEEecCCCCCCCCC-cccCCCceeEEeecCCeEEEEeccCCCcceEEEEEec
Q 048511 106 VESL---------------LIGHEDWVYSVQWEPPSTAPSDG-VSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVG 169 (351)
Q Consensus 106 ~~~~---------------~~~h~~~v~~l~~~p~~~~~~~~-~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 169 (351)
+|.. +.+|...|.+++|+ +++ ++ |++++.|+.|++||+++ +..+..+.
T Consensus 108 vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~------p~~~~~------l~s~~~dg~i~iwd~~~--~~~~~~~~-- 171 (402)
T 2aq5_A 108 VWEIPDGGLVLPLREPVITLEGHTKRVGIVAWH------PTAQNV------LLSAGCDNVILVWDVGT--GAAVLTLG-- 171 (402)
T ss_dssp EEECCTTCCSSCBCSCSEEEECCSSCEEEEEEC------SSBTTE------EEEEETTSCEEEEETTT--TEEEEEEC--
T ss_pred EEEccCCCCccccCCceEEecCCCCeEEEEEEC------cCCCCE------EEEEcCCCEEEEEECCC--CCccEEEe--
Confidence 7763 44689999999999 666 57 99999999999999998 66665551
Q ss_pred cccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccc-cccccc-EEEEEeecCCCEEEEE---eCCC
Q 048511 170 ELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP-SGHFAA-VMDISWSRSSDYLLSV---SHDQ 244 (351)
Q Consensus 170 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~~~~~-v~~v~~sp~~~~l~s~---~~dg 244 (351)
...|...|.+++|+|++++|++++.|+.|++||++++ ..+..+ ..|.+. +..++|+|++++|++| +.|+
T Consensus 172 -~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~ 245 (402)
T 2aq5_A 172 -PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG-----TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSER 245 (402)
T ss_dssp -TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT-----EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCE
T ss_pred -cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC-----ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCc
Confidence 1268889999999999999999999999999999886 446666 677765 8999999999999999 7899
Q ss_pred cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEE-EecCCCeEEEEecC-chh-hhceeec
Q 048511 245 TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFV-SGADEKVARVFEAP-LSF-LKTLNHA 316 (351)
Q Consensus 245 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-s~~~dg~v~vw~~~-~~~-~~~~~~~ 316 (351)
.|++||+++.... . .... ..|...+.+++|+| ++.+|+ +|+.|+.|++|++. ++. +..+..+
T Consensus 246 ~i~iwd~~~~~~~------~-~~~~-~~~~~~v~~~~~s~--~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~ 310 (402)
T 2aq5_A 246 QVALWDTKHLEEP------L-SLQE-LDTSSGVLLPFFDP--DTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMF 310 (402)
T ss_dssp EEEEEETTBCSSC------S-EEEE-CCCCSSCEEEEEET--TTTEEEEEETTCSCEEEEEECSSTTCEEEEEEE
T ss_pred eEEEEcCccccCC------c-eEEe-ccCCCceeEEEEcC--CCCEEEEEEcCCCeEEEEEecCCCcceEeeccc
Confidence 9999999886521 1 1111 14556799999999 888875 66689999999987 332 5555554
No 116
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.7e-28 Score=218.20 Aligned_cols=237 Identities=11% Similarity=-0.040 Sum_probs=184.9
Q ss_pred CceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCc---ccceeecc----------------------------
Q 048511 30 DWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRG---SSANTQST---------------------------- 78 (351)
Q Consensus 30 ~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~---~~~~~~~~---------------------------- 78 (351)
.++++++|+ ++|++|+++ .++.|++||+.+++ .+......
T Consensus 5 ~p~~~v~~s--------~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (450)
T 2vdu_B 5 HPLQNLLTS--------RDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKK 75 (450)
T ss_dssp CCCCEEEEC--------SSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------
T ss_pred ccEEEEEec--------CCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccc
Confidence 578999999 888866665 57899999998887 33222110
Q ss_pred -------------------------cccceeeeEeeecCCeE-EecCCceeEEEEEec----------c--ccccceEEE
Q 048511 79 -------------------------YRKEVISLASYIEGPVL-VAGSSSYQVSVESLL----------I--GHEDWVYSV 120 (351)
Q Consensus 79 -------------------------~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~----------~--~h~~~v~~l 120 (351)
+...+.+++|+|+++.| ++++.++.+.+|... . .|...|.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 155 (450)
T 2vdu_B 76 LKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAI 155 (450)
T ss_dssp ------------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEE
T ss_pred cccCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEE
Confidence 11257899999999996 788888888877654 1 456789999
Q ss_pred EecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCC---CCEEEEEeeCC
Q 048511 121 QWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD---GRSILAHGYGG 197 (351)
Q Consensus 121 ~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~---~~~l~~~~~dg 197 (351)
+|+ +++++ |++++.|+.|++|++.. +..... ....+..|...|.+++|+|+ +++|++++.|+
T Consensus 156 ~~s------p~~~~------l~~~~~~g~v~~~~~~~--~~~~~~-~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~ 220 (450)
T 2vdu_B 156 SIA------EDDTT------VIIADKFGDVYSIDINS--IPEEKF-TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDE 220 (450)
T ss_dssp EEC------TTSSE------EEEEETTSEEEEEETTS--CCCSSC-CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTS
T ss_pred EEc------CCCCE------EEEEeCCCcEEEEecCC--cccccc-cceeeecccCceEEEEEcCCCCCCcEEEEEcCCC
Confidence 999 78888 99999999999999987 332210 00112367889999999999 99999999999
Q ss_pred eEEEEEcccCcccCcccccc-cccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccc------
Q 048511 198 AFHLWRNVGVDIDNWQPQKV-PSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARP------ 270 (351)
Q Consensus 198 ~i~~~d~~~~~~~~~~~~~~-~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------ 270 (351)
.|++||++++ .++.. +.+|...|.+++|+ ++++|++++.|+.|++||+++++... .+...
T Consensus 221 ~i~vwd~~~~-----~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~-------~~~~~~~~~~~ 287 (450)
T 2vdu_B 221 HIKISHYPQC-----FIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLS-------TFDYNSLIKPY 287 (450)
T ss_dssp CEEEEEESCT-----TCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEE-------EEECHHHHGGG
T ss_pred cEEEEECCCC-----ceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEee-------eecchhhhhhh
Confidence 9999999876 33444 56899999999999 99999999999999999998876211 11100
Q ss_pred ----------------cccccceeEEEEeeeCCCcEEEEec-CCCeEEEEec
Q 048511 271 ----------------QVHGHDINCVTIIQGKGNHRFVSGA-DEKVARVFEA 305 (351)
Q Consensus 271 ----------------~~~~~~i~~~~~~~~~~~~~l~s~~-~dg~v~vw~~ 305 (351)
......|.+++|+| ++.+|++++ .|+.|++|++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 288 LNDQHLAPPRFQNENNDIIEFAVSKIIKSK--NLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CCTTSBC----------CBCCCEEEEEECS--SSSEEEEEETTCSEEEEEEE
T ss_pred hhhcccccccccccccccceEEEEEEEEeC--CCCEEEEEECCCCeEEEEEe
Confidence 02234589999999 899999888 8999999999
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=3.3e-28 Score=216.29 Aligned_cols=229 Identities=17% Similarity=0.276 Sum_probs=182.9
Q ss_pred CCCCCceEEEEEccCC-------CceEEEEeeeecCCceeEEEeeCCcccCCCCCcc-EEEEeeCCCcEEEEecCCCccc
Q 048511 1 MGGLDNKIHLYRGQRT-------GKFVRACELKGHTDWIRSLDFSLPVCTSGEAISI-LLVSSSQDKVIRIWKLALRGSS 72 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~-------~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~ 72 (351)
+|+.||.|++|++... +....+..+.+|...|++|+|+ +++. +|++++.||+|++|++......
T Consensus 146 t~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--------~~~~~~l~s~~~dg~i~vwd~~~~~~~ 217 (430)
T 2xyi_A 146 TKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWN--------PNLNGYLLSASDDHTICLWDINATPKE 217 (430)
T ss_dssp EECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEEC--------TTSTTEEEEECTTSCEEEEETTSCCBG
T ss_pred EECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeC--------CCCCCeEEEEeCCCeEEEEeCCCCCCC
Confidence 4688999999999751 2245677888999999999999 6676 9999999999999999874321
Q ss_pred ------ceeecccccceeeeEeee-cCCeEEecCCceeEEEEEe-----------ccccccceEEEEecCCCCCCCCCc-
Q 048511 73 ------ANTQSTYRKEVISLASYI-EGPVLVAGSSSYQVSVESL-----------LIGHEDWVYSVQWEPPSTAPSDGV- 133 (351)
Q Consensus 73 ------~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~-----------~~~h~~~v~~l~~~p~~~~~~~~~- 133 (351)
......+...+.+++|+| ++.++++++.++.+.++.. +..|...|++++|+ +++.
T Consensus 218 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~------p~~~~ 291 (430)
T 2xyi_A 218 HRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN------PYSEF 291 (430)
T ss_dssp GGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEEC------SSCTT
T ss_pred CceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeC------CCCCC
Confidence 122334566788999999 6778888888888877653 34688899999999 5554
Q ss_pred ccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcccC-
Q 048511 134 SCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDIDN- 211 (351)
Q Consensus 134 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~- 211 (351)
+ |++|+.||.|++||++.. ...+..+. .|...|.+++|+|+++ +|++++.|+.|++||+.......
T Consensus 292 ~------l~tg~~dg~v~vwd~~~~-~~~~~~~~-----~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 359 (430)
T 2xyi_A 292 I------LATGSADKTVALWDLRNL-KLKLHSFE-----SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359 (430)
T ss_dssp E------EEEEETTSEEEEEETTCT-TSCSEEEE-----CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred E------EEEEeCCCeEEEEeCCCC-CCCeEEee-----cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence 6 889999999999999873 23344444 6888999999999985 68999999999999998732110
Q ss_pred --------cccccccccccccEEEEEeecCCC-EEEEEeCCCcEEEEcCCCcc
Q 048511 212 --------WQPQKVPSGHFAAVMDISWSRSSD-YLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 212 --------~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~~dg~i~vwd~~~~~ 255 (351)
..++..+.+|...|++++|+|+++ +|++++.||.|+||++....
T Consensus 360 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 360 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp HHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred ccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 144566778999999999999999 89999999999999986543
No 118
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.8e-28 Score=207.18 Aligned_cols=224 Identities=7% Similarity=-0.047 Sum_probs=163.8
Q ss_pred CCCCCceEEEEEccCC--------CceEEEEee-eecCCceeEEEeeCCcccCCCC--CccEEEEeeCCCcEEEEecCCC
Q 048511 1 MGGLDNKIHLYRGQRT--------GKFVRACEL-KGHTDWIRSLDFSLPVCTSGEA--ISILLVSSSQDKVIRIWKLALR 69 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~--------~~~~~~~~~-~~h~~~V~~l~~~~~~~~~~~~--~~~~l~t~~~dg~i~iwd~~~~ 69 (351)
+|+.|++|++|+.... ++ .+..+ .+|.+.|.+++|+ + ++++|++++.||+|++||+.++
T Consensus 90 s~s~D~~i~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~--------~~~~~~~l~s~s~dg~i~~wd~~~~ 159 (343)
T 3lrv_A 90 SRGPCNRLLLLYPGNQITILDSKTNK--VLREIEVDSANEIIYMYGH--------NEVNTEYFIWADNRGTIGFQSYEDD 159 (343)
T ss_dssp EECSTTEEEEEETTTEEEEEETTTCC--EEEEEECCCSSCEEEEECC--------C---CCEEEEEETTCCEEEEESSSS
T ss_pred EecCCCeEEEEEccCceEEeecCCcc--eeEEeecCCCCCEEEEEcC--------CCCCCCEEEEEeCCCcEEEEECCCC
Confidence 4789999999977630 21 12233 3677899999999 7 8999999999999999999877
Q ss_pred cccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCe
Q 048511 70 GSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT 149 (351)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~ 149 (351)
+..... ...|...|.+++|+ +++.+ |++|+.|+.
T Consensus 160 ~~~~~~----------------------------------~~~~~~~i~~~~~~------pdg~~------lasg~~dg~ 193 (343)
T 3lrv_A 160 SQYIVH----------------------------------SAKSDVEYSSGVLH------KDSLL------LALYSPDGI 193 (343)
T ss_dssp CEEEEE----------------------------------CCCSSCCCCEEEEC------TTSCE------EEEECTTSC
T ss_pred cEEEEE----------------------------------ecCCCCceEEEEEC------CCCCE------EEEEcCCCE
Confidence 542211 12355679999999 78899 999999999
Q ss_pred EEEEeccCCCcceE-EEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc---cccccE
Q 048511 150 MMIWQPEKTTGIWM-NVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS---GHFAAV 225 (351)
Q Consensus 150 i~iwd~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~---~~~~~v 225 (351)
|++||+++ +... ..+. ..|...|.+++|+|++.+|++++ ++.|++||+++.+ ....+. .|...+
T Consensus 194 i~iwd~~~--~~~~~~~~~----~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~-----~~~~~~~~~~~~~~~ 261 (343)
T 3lrv_A 194 LDVYNLSS--PDQASSRFP----VDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDV-----GTLAYPTYTIPEFKT 261 (343)
T ss_dssp EEEEESSC--TTSCCEECC----CCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSST-----TCBSSCCCBC-----
T ss_pred EEEEECCC--CCCCccEEe----ccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCC-----cceeecccccccccc
Confidence 99999998 5544 3443 13888999999999999999999 5599999998863 233333 244444
Q ss_pred E--EEEeecCCCEEEEEeC-CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEee-eCCCcEEEEecCCCeEE
Q 048511 226 M--DISWSRSSDYLLSVSH-DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQ-GKGNHRFVSGADEKVAR 301 (351)
Q Consensus 226 ~--~v~~sp~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~s~~~dg~v~ 301 (351)
. +++|+|++++|++++. |+.|+||++.... ..|.. .++..++|.+ ..+...+++++.|+.++
T Consensus 262 ~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~------~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~d~~~~ 327 (343)
T 3lrv_A 262 GTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT------KNWTK--------DEESALCLQSDTADFTDMDVVCGDGGIA 327 (343)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT------CSEEE--------EEEEECCC----CCCCEEEEEEETTEEE
T ss_pred cceEEEECCCCCEEEEecCCCCcEEEEEEcccc------cceEe--------cCceeEecCccccccceeEEEecCCceE
Confidence 4 6999999999999988 9999999997654 23443 3355666654 11456777788888887
Q ss_pred EEecC
Q 048511 302 VFEAP 306 (351)
Q Consensus 302 vw~~~ 306 (351)
++-..
T Consensus 328 ~~~~~ 332 (343)
T 3lrv_A 328 AILKT 332 (343)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 77544
No 119
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=1.8e-27 Score=202.60 Aligned_cols=219 Identities=20% Similarity=0.296 Sum_probs=181.7
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.||+|++|++++ + +.+..+.+|...+.++.+. +..|++++.++.+++|+.............+.
T Consensus 84 sgs~Dg~v~iw~~~~-~--~~~~~~~~h~~~~~~~~~~----------~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (318)
T 4ggc_A 84 VGTSSAEVQLWDVQQ-Q--KRLRNMTSHSARVGSLSWN----------SYILSSGSRSGHIHHHDVRVAEHHVATLSGHS 150 (318)
T ss_dssp EEETTSEEEEEETTT-T--EEEEEEECCSSCEEEEEEE----------TTEEEEEETTSEEEEEETTSSSCEEEEEECCS
T ss_pred EEECCCcEEEeecCC-c--eeEEEecCccceEEEeecC----------CCEEEEEecCCceEeeecCCCceeEEEEcCcc
Confidence 578999999999998 7 5677889999998887766 67999999999999999988776666666667
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEe------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCC
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESL------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDK 148 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~ 148 (351)
..+..+.+.+++..++++..++.++++.. ...|...|.++.++|. ...+ ..+++++.++
T Consensus 151 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~----~~~~~~~~~~ 221 (318)
T 4ggc_A 151 QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW-----QSNV----LATGGGTSDR 221 (318)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTT-----STTE----EEEEECTTTC
T ss_pred CceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCC-----CCcE----EEEEecCCCC
Confidence 78899999999999999999999988754 3346678999999952 2222 0145677899
Q ss_pred eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe--eCCeEEEEEcccCcccCcccccccccccccEE
Q 048511 149 TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG--YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVM 226 (351)
Q Consensus 149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~ 226 (351)
.|++||.+. ....... .+...+..+.|+|++..+++++ .|+.|++||++++ +++..+.+|.+.|+
T Consensus 222 ~i~lwd~~~--~~~~~~~------~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~-----~~~~~l~gH~~~V~ 288 (318)
T 4ggc_A 222 HIRIWNVCS--GACLSAV------DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM-----AKVAELKGHTSRVL 288 (318)
T ss_dssp EEEEEETTT--CCEEEEE------ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC-----CEEEEECCCSSCEE
T ss_pred EEEEEeccc--ccccccc------cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC-----cEEEEEcCCCCCEE
Confidence 999999987 5444433 3556799999999999887765 7899999999987 56889999999999
Q ss_pred EEEeecCCCEEEEEeCCCcEEEEcCCCc
Q 048511 227 DISWSRSSDYLLSVSHDQTTRVFAPWKN 254 (351)
Q Consensus 227 ~v~~sp~~~~l~s~~~dg~i~vwd~~~~ 254 (351)
+++|+|++++|++|+.|++|+|||+...
T Consensus 289 ~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 289 SLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred EEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9999999999999999999999998654
No 120
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.7e-27 Score=211.74 Aligned_cols=256 Identities=14% Similarity=0.060 Sum_probs=197.8
Q ss_pred CCCCceEEEEEccCCCceEEEE---eeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRAC---ELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST 78 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~---~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~ 78 (351)
++.|++|++||+.+ ++..... .+.+|.+.|.+++|+ +++.++++++.|+.|++||+.+++...... .
T Consensus 140 ~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~-~ 209 (433)
T 3bws_A 140 LLEDEGMDVLDINS-GQTVRLSPPEKYKKKLGFVETISIP--------EHNELWVSQMQANAVHVFDLKTLAYKATVD-L 209 (433)
T ss_dssp BTTSSSEEEEETTT-CCEEEECCCHHHHTTCCEEEEEEEG--------GGTEEEEEEGGGTEEEEEETTTCCEEEEEE-C
T ss_pred eCCCCeEEEEECCC-CeEeeecCcccccccCCceeEEEEc--------CCCEEEEEECCCCEEEEEECCCceEEEEEc-C
Confidence 56788999999998 6543222 355899999999999 889999999999999999998876655443 3
Q ss_pred cccceeeeEeeecCCeEE-ecCCceeEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEee----
Q 048511 79 YRKEVISLASYIEGPVLV-AGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS---- 145 (351)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~---- 145 (351)
+...+..+++++++..++ ++..++.+.++.. +. +...+.+++|+ ++++. +++++
T Consensus 210 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~------~~g~~------l~~~~~~~~ 276 (433)
T 3bws_A 210 TGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD-KIGLPRGLLLS------KDGKE------LYIAQFSAS 276 (433)
T ss_dssp SSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC-CCSEEEEEEEC------TTSSE------EEEEEEESC
T ss_pred CCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec-CCCCceEEEEc------CCCCE------EEEEECCCC
Confidence 455788999999999875 4546777766553 22 23458999999 78888 88887
Q ss_pred ----cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEE-EEEeeCCeEEEEEcccCcccCccccccccc
Q 048511 146 ----MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSI-LAHGYGGAFHLWRNVGVDIDNWQPQKVPSG 220 (351)
Q Consensus 146 ----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 220 (351)
.|+.|++||+++ +.....+. +...+.+++|+|+++.+ ++++.++.|++||+.+++ .+..+.
T Consensus 277 ~~~~~dg~i~~~d~~~--~~~~~~~~------~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~-----~~~~~~- 342 (433)
T 3bws_A 277 NQESGGGRLGIYSMDK--EKLIDTIG------PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK-----VQKSIP- 342 (433)
T ss_dssp TTCSCCEEEEEEETTT--TEEEEEEE------EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE-----EEEEEE-
T ss_pred ccccCCCeEEEEECCC--CcEEeecc------CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc-----EEEEec-
Confidence 488999999998 65554442 34478899999999755 556889999999998763 344443
Q ss_pred ccccEEEEEeecCCCEEEEEeC---------------CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeee
Q 048511 221 HFAAVMDISWSRSSDYLLSVSH---------------DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQG 285 (351)
Q Consensus 221 ~~~~v~~v~~sp~~~~l~s~~~---------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 285 (351)
+...+.+++|+|++++|++++. ||.|++||+.+++ .+..+.. ...+.+++|+|
T Consensus 343 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~----------~~~~~~~-~~~~~~~~~s~- 410 (433)
T 3bws_A 343 VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT----------VKEFWEA-GNQPTGLDVSP- 410 (433)
T ss_dssp CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE----------EEEEEEC-SSSEEEEEECT-
T ss_pred CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc----------EEEEecC-CCCCceEEEcC-
Confidence 6678999999999998888776 5799999998776 3333323 34689999999
Q ss_pred CCCcEEEEec-CCCeEEEEecCc
Q 048511 286 KGNHRFVSGA-DEKVARVFEAPL 307 (351)
Q Consensus 286 ~~~~~l~s~~-~dg~v~vw~~~~ 307 (351)
++.+|++++ .|+.|++|++++
T Consensus 411 -dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 411 -DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp -TSCEEEEEETTTTEEEEEEETT
T ss_pred -CCCEEEEEECCCCeEEEEEecC
Confidence 888888776 599999999763
No 121
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=9.8e-28 Score=208.26 Aligned_cols=230 Identities=11% Similarity=0.074 Sum_probs=174.0
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
+|+.||.|++||+.+ ........+.+|.+.|++++|+ +++++|++++.||.|++||+.++.... ...+.
T Consensus 59 ~~~~dg~i~iw~~~~-~~~~~~~~~~~h~~~v~~~~~~--------~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~ 127 (368)
T 3mmy_A 59 AGSWANDVRCWEVQD-SGQTIPKAQQMHTGPVLDVCWS--------DDGSKVFTASCDKTAKMWDLSSNQAIQ--IAQHD 127 (368)
T ss_dssp EEETTSEEEEEEECT-TSCEEEEEEEECSSCEEEEEEC--------TTSSEEEEEETTSEEEEEETTTTEEEE--EEECS
T ss_pred EECCCCcEEEEEcCC-CCceeEEEeccccCCEEEEEEC--------cCCCEEEEEcCCCcEEEEEcCCCCcee--ecccc
Confidence 478899999999987 3334557888999999999999 889999999999999999999877554 23356
Q ss_pred cceeeeEe--eecCCeEEecCCceeEEEEEeccc--------cc------------------------------------
Q 048511 81 KEVISLAS--YIEGPVLVAGSSSYQVSVESLLIG--------HE------------------------------------ 114 (351)
Q Consensus 81 ~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~--------h~------------------------------------ 114 (351)
..+.++.| ++++..+++++.++.+.++....+ +.
T Consensus 128 ~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 207 (368)
T 3mmy_A 128 APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRI 207 (368)
T ss_dssp SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEEC
T ss_pred CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhc
Confidence 68889999 889999999998888877653211 11
Q ss_pred -----cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc-ceEEEEEecc-------ccccccceEEE
Q 048511 115 -----DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG-IWMNVVTVGE-------LSHSALGFYGG 181 (351)
Q Consensus 115 -----~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~-------~~~~~~~i~~i 181 (351)
..+.++.+.+... ..... +++++.|+.|++||++.... .....+.... ...+...|.++
T Consensus 208 ~~~~~~~~~~~~~~~~~~--~~~~~------~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 279 (368)
T 3mmy_A 208 ESPLKHQHRCVAIFKDKQ--NKPTG------FALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGI 279 (368)
T ss_dssp CCSCSSCEEEEEEEECTT--SCEEE------EEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEE
T ss_pred cccccCCCceEEEcccCC--CCCCe------EEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEE
Confidence 1223333331110 11122 89999999999999987322 3334443110 01122279999
Q ss_pred EEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCc
Q 048511 182 HWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKN 254 (351)
Q Consensus 182 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~ 254 (351)
+|+|++++|++++.||.|++||++++ .++..+.+|...|.+++|+|++++|++++.|+..+.|++...
T Consensus 280 ~~sp~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 280 AFHPVHGTLATVGSDGRFSFWDKDAR-----TKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp EECTTTCCEEEEETTSCEEEEETTTT-----EEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred EEecCCCEEEEEccCCeEEEEECCCC-----cEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccCC
Confidence 99999999999999999999999986 567888899999999999999999999999987777665543
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=5.5e-28 Score=212.24 Aligned_cols=267 Identities=11% Similarity=0.029 Sum_probs=171.9
Q ss_pred CCCceEEEEEccCCC-------ceEEEEeeeecCCceeEEEeeCCc---------------ccCCCCCccEEEEeeCCCc
Q 048511 3 GLDNKIHLYRGQRTG-------KFVRACELKGHTDWIRSLDFSLPV---------------CTSGEAISILLVSSSQDKV 60 (351)
Q Consensus 3 ~~dg~i~vw~~~~~~-------~~~~~~~~~~h~~~V~~l~~~~~~---------------~~~~~~~~~~l~t~~~dg~ 60 (351)
+.|+.|++|+..... ....+. ...|...+..+.|.+.. .+ +++.+|++++.|++
T Consensus 37 g~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~las~~~d~~ 112 (393)
T 4gq1_A 37 GHDTGITIYCASEEQTPGSTGLTLQELF-TIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSP---VYSLFLACVCQDNT 112 (393)
T ss_dssp EESSEEEEEEEEECCSSSCCSEEEEEEE-EEECSSCEEEEEECTTCEEECC----------CC---EEEEEEEEEETTSC
T ss_pred ECCCCEEEEECCCCCcccccccceeeeE-EEecCCCeeeEeecCCccccccccCCCcceeecC---CCCCEEEEEeCCCc
Confidence 457889999764311 112222 22345566666665321 01 45678999999999
Q ss_pred EEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCC--CCCCCcccCCC
Q 048511 61 IRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPST--APSDGVSCQQP 138 (351)
Q Consensus 61 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~--~~~~~~~~~~~ 138 (351)
|++||+..+..... .....+.+|.+.|++++|+|... ...++++
T Consensus 113 v~lw~~~~~~~~~~------------------------------~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~---- 158 (393)
T 4gq1_A 113 VRLIITKNETIITQ------------------------------HVLGGKSGHHNFVNDIDIADVYSADNRLAEQV---- 158 (393)
T ss_dssp EEEEEEETTEEEEE------------------------------EEECTTTSCSSCEEEEEEEEEECTTCSEEEEE----
T ss_pred EEEEECCCCcccee------------------------------eeecccCCCCCceEEEEEccccccccCCCCCE----
Confidence 99999987654321 12345789999999999995210 0037788
Q ss_pred ceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcccCc-----
Q 048511 139 SSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDIDNW----- 212 (351)
Q Consensus 139 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~----- 212 (351)
||+++.|++|+|||++. +....... .|...+.+++|+|++. +|++++.|++|++||+++++....
T Consensus 159 --las~s~D~tv~~Wd~~~--~~~~~~~~-----~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~ 229 (393)
T 4gq1_A 159 --IASVGDDCTLIIWRLTD--EGPILAGY-----PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTE 229 (393)
T ss_dssp --EEEEETTSEEEEEEEET--TEEEEEEE-----ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC---------
T ss_pred --EEEEECCCeEEEEECCC--Cceeeeec-----CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccC
Confidence 99999999999999987 55554444 6778899999999875 799999999999999987642100
Q ss_pred ---------------ccccccccccccEEEEEee-cCCCEEEEEeCCCcEEEEcCCCccccccC----ccceE-----Ee
Q 048511 213 ---------------QPQKVPSGHFAAVMDISWS-RSSDYLLSVSHDQTTRVFAPWKNVASLMG----ENSWH-----EV 267 (351)
Q Consensus 213 ---------------~~~~~~~~~~~~v~~v~~s-p~~~~l~s~~~dg~i~vwd~~~~~~~~~~----~~~~~-----~~ 267 (351)
.......+|...+.++.|+ |+++.|++++.|+++++||+......... ..... ..
T Consensus 230 ~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~ 309 (393)
T 4gq1_A 230 LVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNV 309 (393)
T ss_dssp -CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSE
T ss_pred CcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccc
Confidence 0011224677889999987 79999999999999999999776521100 00000 00
Q ss_pred ccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511 268 ARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT 317 (351)
Q Consensus 268 ~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~ 317 (351)
.....+.. .....|++..++.++++|+.||.|++||+. +..+..+..+.
T Consensus 310 ~~~~~~~~-~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~ 359 (393)
T 4gq1_A 310 QGISLFPS-LLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG 359 (393)
T ss_dssp EEECSSCC-SSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS
T ss_pred ccccccCc-ceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC
Confidence 00111112 233445553456678899999999999987 65555555443
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.7e-27 Score=198.76 Aligned_cols=197 Identities=15% Similarity=0.067 Sum_probs=139.8
Q ss_pred CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCccc-CCCCCccEEEEeeCCCcEEEEecCCCcccceeeccc--c
Q 048511 4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCT-SGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTY--R 80 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~--~ 80 (351)
.|+.|++|++..+++ .+..+.+|...++.++|+ + + .++.+|++++.|++|+|||+.+++.+..+.... .
T Consensus 155 ~d~~V~~~~~s~dG~--~~~s~~~~~~~v~~l~fs----~~~--g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v 226 (356)
T 2w18_A 155 SDQQVEVMTFAEDGG--GKENQFLMPPEETILTFA----EVQ--GMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQ 226 (356)
T ss_dssp TTCEEEEEEECTTSC--EEEEEEECCCSSCEEEEE----EEE--TSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---
T ss_pred CCCcEEEEEECCCCc--eeeeeccCCCceeeEEee----ccC--CCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcce
Confidence 599999999966463 556778999999999999 2 1 267999999999999999999998776554221 1
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG 160 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 160 (351)
..+.+++|+|+|.+++++..+ .. .|. +++|+.|++|++||..+ +
T Consensus 227 ~~v~~vafSpdG~~lvs~s~~-------------~~----~w~-----------------laSGs~D~tIklWd~~t--g 270 (356)
T 2w18_A 227 ASVCHKAYSEMGLLFIVLSHP-------------CA----KES-----------------ESLRSPVFQLIVINPKT--T 270 (356)
T ss_dssp CCCEEEEEEETTEEEEEEC----------------------------------------------CCEEEEEEETTT--T
T ss_pred eeeEEEEECCCCCEEEEeccC-------------CC----cce-----------------eeccCCCcEEEEEECCC--C
Confidence 233344566665554432211 00 012 78899999999999998 7
Q ss_pred ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEE-EEEeecCCCEEEE
Q 048511 161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVM-DISWSRSSDYLLS 239 (351)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~-~v~~sp~~~~l~s 239 (351)
..+..+......+|...+.+..++ +..+++++.|++|+|||+.++ +++.++.+|...+. .++|+|+|++|++
T Consensus 271 k~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tG-----k~l~tL~gH~~~vvs~vafSPDG~~LaS 343 (356)
T 2w18_A 271 LSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLG-----QCTALLPPVSDQHWSFVKWSGTDSHLLA 343 (356)
T ss_dssp EEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTC-----SEEEEECCC--CCCCEEEECSSSSEEEE
T ss_pred EEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCC-----cEEEEecCCCCCeEEEEEECCCCCEEEE
Confidence 766554332223555555555544 788999999999999999998 56888888887655 5899999999999
Q ss_pred EeCCCcEEEEcC
Q 048511 240 VSHDQTTRVFAP 251 (351)
Q Consensus 240 ~~~dg~i~vwd~ 251 (351)
|+.|++|+|||+
T Consensus 344 GS~D~TIklWd~ 355 (356)
T 2w18_A 344 GQKDGNIFVYHY 355 (356)
T ss_dssp ECTTSCEEEEEE
T ss_pred EECCCcEEEecC
Confidence 999999999986
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=2.3e-25 Score=197.98 Aligned_cols=264 Identities=9% Similarity=-0.003 Sum_probs=197.5
Q ss_pred CCCc--eEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceee----
Q 048511 3 GLDN--KIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQ---- 76 (351)
Q Consensus 3 ~~dg--~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~---- 76 (351)
+.++ .|.+||... +.+..+..+..+ ..+.+++|+ +++.++++++.|+.|++||+.+++......
T Consensus 96 ~~~~~~~l~~~d~~~-~~~~~~~~~~~~-~~~~~~~~s--------~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~ 165 (433)
T 3bws_A 96 PEELNEKLIALDKEG-ITHRFISRFKTG-FQPKSVRFI--------DNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKY 165 (433)
T ss_dssp GGGGTTCEEECCBTT-CSEEEEEEEECS-SCBCCCEES--------SSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHH
T ss_pred cCCCceEEEEECCCC-CcceEEEEEcCC-CCceEEEEe--------CCCeEEEEeCCCCeEEEEECCCCeEeeecCcccc
Confidence 4455 444445544 445666666655 456699999 778888899999999999999877654222
Q ss_pred cccccceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCcee-EEeecC
Q 048511 77 STYRKEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSI-LSASMD 147 (351)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l-~s~~~d 147 (351)
..+...+.++++++++.+++++..++.+.++. .+..|...+.+++|+ ++++. + ++++.|
T Consensus 166 ~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~------~~~~~------l~~~~~~~ 233 (433)
T 3bws_A 166 KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYD------PIRDL------VYCSNWIS 233 (433)
T ss_dssp HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEE------TTTTE------EEEEETTT
T ss_pred cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEc------CCCCE------EEEEecCC
Confidence 23345778899999999999998888887664 345678899999999 67776 6 555589
Q ss_pred CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee--------CCeEEEEEcccCcccCcccccccc
Q 048511 148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY--------GGAFHLWRNVGVDIDNWQPQKVPS 219 (351)
Q Consensus 148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--------dg~i~~~d~~~~~~~~~~~~~~~~ 219 (351)
+.|++||+++ +..+..+. ....+.+++|+|+++.+++++. |+.|++||+.+++ .+.. .
T Consensus 234 ~~i~~~d~~~--~~~~~~~~------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~-----~~~~-~ 299 (433)
T 3bws_A 234 EDISVIDRKT--KLEIRKTD------KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK-----LIDT-I 299 (433)
T ss_dssp TEEEEEETTT--TEEEEECC------CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE-----EEEE-E
T ss_pred CcEEEEECCC--CcEEEEec------CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc-----EEee-c
Confidence 9999999988 66555443 2345899999999999998884 8899999998763 2333 3
Q ss_pred cccccEEEEEeecCCCEE-EEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecC--
Q 048511 220 GHFAAVMDISWSRSSDYL-LSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD-- 296 (351)
Q Consensus 220 ~~~~~v~~v~~sp~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-- 296 (351)
.|...+..++|+|+++.+ ++++.|+.|++||+.+++ .+..+ .+...+.+++|+| ++.+|++++.
T Consensus 300 ~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~----------~~~~~-~~~~~~~~~~~s~--dg~~l~~~~~~~ 366 (433)
T 3bws_A 300 GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK----------VQKSI-PVFDKPNTIALSP--DGKYLYVSCRGP 366 (433)
T ss_dssp EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE----------EEEEE-ECSSSEEEEEECT--TSSEEEEEECCC
T ss_pred cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc----------EEEEe-cCCCCCCeEEEcC--CCCEEEEEecCC
Confidence 466688999999999755 666889999999998765 22222 2556689999999 8888877765
Q ss_pred -------------CCeEEEEecC-chhhhceee
Q 048511 297 -------------EKVARVFEAP-LSFLKTLNH 315 (351)
Q Consensus 297 -------------dg~v~vw~~~-~~~~~~~~~ 315 (351)
||.|++||+. ++.+..+..
T Consensus 367 ~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~ 399 (433)
T 3bws_A 367 NHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA 399 (433)
T ss_dssp CCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC
T ss_pred CccccccccccccceEEEEEECCCCcEEEEecC
Confidence 5799999986 666665544
No 125
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=2.4e-25 Score=196.62 Aligned_cols=266 Identities=11% Similarity=0.057 Sum_probs=193.0
Q ss_pred eEEEEEc--cCCCceEEEEeeeecCCceeEEEeeCC--------cccCCCCCccEEEEeeCC------CcEEEEecCCCc
Q 048511 7 KIHLYRG--QRTGKFVRACELKGHTDWIRSLDFSLP--------VCTSGEAISILLVSSSQD------KVIRIWKLALRG 70 (351)
Q Consensus 7 ~i~vw~~--~~~~~~~~~~~~~~h~~~V~~l~~~~~--------~~~~~~~~~~~l~t~~~d------g~i~iwd~~~~~ 70 (351)
+|++||+ .+ ++......+.+|...+..+++.+. ..+. ..+..++.++.+ +.|++||+....
T Consensus 94 ~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~--~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~ 170 (415)
T 2hqs_A 94 AYQLVDTGGAP-GTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG--AFRTRIAYVVQTNGGQFPYELRVSDYDGYN 170 (415)
T ss_dssp EEEEEECSSST-TCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC--CTTCEEEEEEECSSSSCCEEEEEEETTSCS
T ss_pred EEEEEeCCCCC-CCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC--cCCCEEEEEEecCCCCccceEEEEcCCCCC
Confidence 9999999 87 654444678999998888877610 0000 125566666654 799999997543
Q ss_pred ccceeecccccceeeeEeeecCCeEEecCCce---eEEEEE-------eccccccceEEEEecCCCCCCCCCcccCCCce
Q 048511 71 SSANTQSTYRKEVISLASYIEGPVLVAGSSSY---QVSVES-------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSS 140 (351)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~-------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~ 140 (351)
...+ ..+...+.+++|+|+|+.++.+..+. .+.++. .+..|...+.+++|+ ||++.
T Consensus 171 -~~~l-~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~s------pdg~~------ 236 (415)
T 2hqs_A 171 -QFVV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFS------PDGSK------ 236 (415)
T ss_dssp -CEEE-EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEEC------TTSSE------
T ss_pred -CEEE-eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEc------CCCCE------
Confidence 2222 23456788999999999998876543 555543 345677889999999 78887
Q ss_pred eE-EeecCCe--EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-C--eEEEEEcccCcccCccc
Q 048511 141 IL-SASMDKT--MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-G--AFHLWRNVGVDIDNWQP 214 (351)
Q Consensus 141 l~-s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g--~i~~~d~~~~~~~~~~~ 214 (351)
|+ +++.++. |++||+++ +.. ..+ ..+...+.+++|+|++++|++++.+ + .|++||+.+++
T Consensus 237 la~~~~~~g~~~i~~~d~~~--~~~-~~l-----~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~------ 302 (415)
T 2hqs_A 237 LAFALSKTGSLNLYVMDLAS--GQI-RQV-----TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA------ 302 (415)
T ss_dssp EEEEECTTSSCEEEEEETTT--CCE-EEC-----CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC------
T ss_pred EEEEEecCCCceEEEEECCC--CCE-EeC-----cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC------
Confidence 76 6666654 99999987 443 222 2566789999999999999888764 4 68888887763
Q ss_pred ccccccccccEEEEEeecCCCEEEEEeCC---CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEE
Q 048511 215 QKVPSGHFAAVMDISWSRSSDYLLSVSHD---QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRF 291 (351)
Q Consensus 215 ~~~~~~~~~~v~~v~~sp~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 291 (351)
...+..+...+..++|+|+|++|++++.+ ..|++||+.+++ . ..+..+. .+.+++|+| ++++|
T Consensus 303 ~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~----------~-~~l~~~~-~~~~~~~sp--dg~~l 368 (415)
T 2hqs_A 303 PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG----------V-QVLSSTF-LDETPSLAP--NGTMV 368 (415)
T ss_dssp CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC----------E-EECCCSS-SCEEEEECT--TSSEE
T ss_pred EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC----------E-EEecCCC-CcCCeEEcC--CCCEE
Confidence 33444566788999999999999888764 589999998775 1 1222333 789999999 99999
Q ss_pred EEecCCC---eEEEEecCchhhhceeecc
Q 048511 292 VSGADEK---VARVFEAPLSFLKTLNHAT 317 (351)
Q Consensus 292 ~s~~~dg---~v~vw~~~~~~~~~~~~~~ 317 (351)
++++.|+ .|++||+.+...+.+..+.
T Consensus 369 ~~~s~~~~~~~l~~~d~~g~~~~~l~~~~ 397 (415)
T 2hqs_A 369 IYSSSQGMGSVLNLVSTDGRFKARLPATD 397 (415)
T ss_dssp EEEEEETTEEEEEEEETTSCCEEECCCSS
T ss_pred EEEEcCCCccEEEEEECCCCcEEEeeCCC
Confidence 9888776 8999999877777665554
No 126
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.94 E-value=1.4e-24 Score=187.92 Aligned_cols=217 Identities=15% Similarity=0.176 Sum_probs=159.5
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCC-cccceeeccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALR-GSSANTQSTY 79 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~-~~~~~~~~~~ 79 (351)
+|+.|++|++||..+ + ..+..+. |...|.+++|+ ++ .++.+ .|+.|++||+.+. +.+.....
T Consensus 76 ~~~~d~~v~iWd~~~-~--~~~~~~~-~~~~v~~v~~~--------~~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~-- 138 (355)
T 3vu4_A 76 VTGVKEVVHIWDDVK-K--QDVSRIK-VDAPVKDLFLS--------RE--FIVVS-YGDVISVFKFGNPWKRITDDIR-- 138 (355)
T ss_dssp ECSSTTEEEEEETTT-T--EEEEEEE-CSSCEEEEEEC--------SS--EEEEE-ETTEEEEEESSTTCCBSSCCEE--
T ss_pred EECCccEEEEEECCC-C--cEEEEEE-CCCceEEEEEc--------CC--EEEEE-EcCEEEEEECCCCceeeEEecc--
Confidence 367789999999998 7 3455665 67799999999 44 34444 3789999999987 55444432
Q ss_pred ccceeeeEeeecCCeEEe--cCCceeEEEE------------------------EeccccccceEEEEecCCCCCCCCCc
Q 048511 80 RKEVISLASYIEGPVLVA--GSSSYQVSVE------------------------SLLIGHEDWVYSVQWEPPSTAPSDGV 133 (351)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~--~~~~~~~~~~------------------------~~~~~h~~~v~~l~~~p~~~~~~~~~ 133 (351)
....+++++ ..+++ +..++.+.++ ..+.+|...|.+++|+ ++++
T Consensus 139 --~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s------~~g~ 208 (355)
T 3vu4_A 139 --FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLN------RKSD 208 (355)
T ss_dssp --EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEEC------TTSS
T ss_pred --CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEEC------CCCC
Confidence 222334444 44444 5666666443 4467899999999999 7899
Q ss_pred ccCCCceeEEeecCCe-EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCc
Q 048511 134 SCQQPSSILSASMDKT-MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNW 212 (351)
Q Consensus 134 ~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 212 (351)
+ |++|+.|++ |++||+++ +..+..+.. ..|...|.+++|+|++++|++++.|++|++||++.......
T Consensus 209 ~------l~s~s~d~~~v~iwd~~~--~~~~~~~~~---g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~ 277 (355)
T 3vu4_A 209 M------VATCSQDGTIIRVFKTED--GVLVREFRR---GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKR 277 (355)
T ss_dssp E------EEEEETTCSEEEEEETTT--CCEEEEEEC---TTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCS
T ss_pred E------EEEEeCCCCEEEEEECCC--CcEEEEEEc---CCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccc
Confidence 9 999999998 99999998 777766641 12788999999999999999999999999999976532111
Q ss_pred ccccc-----------------c-ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511 213 QPQKV-----------------P-SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 213 ~~~~~-----------------~-~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
..+.. + .........++|++++++|++++.||.+++|++....
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 278 HALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp EETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred ccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 11100 0 0112234668999999999999999999999986544
No 127
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=2.3e-24 Score=181.12 Aligned_cols=251 Identities=15% Similarity=0.102 Sum_probs=185.0
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCC-Ccccceeecccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLAL-RGSSANTQSTYR 80 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~-~~~~~~~~~~~~ 80 (351)
++.|++|++||+.+ ++. ..+..|...|.+++|+ +++++|++++ ++.|.+||+.+ ++..........
T Consensus 18 ~~~~~~i~~~d~~~-~~~---~~~~~~~~~v~~~~~s--------pdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~ 84 (297)
T 2ojh_A 18 GSMRSSIEIFNIRT-RKM---RVVWQTPELFEAPNWS--------PDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFAT 84 (297)
T ss_dssp CCCCEEEEEEETTT-TEE---EEEEEESSCCEEEEEC--------TTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCC
T ss_pred CCcceeEEEEeCCC-Cce---eeeccCCcceEeeEEC--------CCCCEEEEEc-CCeEEEEeCCCCCCceEecccccc
Confidence 56789999999998 643 3556689999999999 8899999987 78999999998 655443333333
Q ss_pred cceeeeEeeecCCeEEecCC--c--eeEEEEE-------eccccccceEEEEecCCCCCCCCCcccCCCceeE-EeecCC
Q 048511 81 KEVISLASYIEGPVLVAGSS--S--YQVSVES-------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSIL-SASMDK 148 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~--~--~~~~~~~-------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~-s~~~d~ 148 (351)
..+..+.|+|+++.++.+.. + ..+..+. .+. +...+..++|+ ++++. |+ +++.++
T Consensus 85 ~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~s------pdg~~------l~~~~~~~~ 151 (297)
T 2ojh_A 85 ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMT-KNLPSYWHGWS------PDGKS------FTYCGIRDQ 151 (297)
T ss_dssp CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECC-SSSSEEEEEEC------TTSSE------EEEEEEETT
T ss_pred ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEee-cCCCccceEEC------CCCCE------EEEEECCCC
Confidence 56778999999999888762 2 2332221 122 23348889999 68876 66 788999
Q ss_pred eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-eCCeEEEEEcccCcccCcccccccccccccEEE
Q 048511 149 TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD 227 (351)
Q Consensus 149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~ 227 (351)
.++||++....+.. ..+ ..+...+.+++|+|++++|+.++ .++.+.+|++.... .....+..|...+..
T Consensus 152 ~~~l~~~~~~~~~~-~~~-----~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~ 221 (297)
T 2ojh_A 152 VFDIYSMDIDSGVE-TRL-----THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG----SSVERITDSAYGDWF 221 (297)
T ss_dssp EEEEEEEETTTCCE-EEC-----CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS----SCEEECCCCSEEEEE
T ss_pred ceEEEEEECCCCcc-eEc-----ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC----CCcEEEecCCcccCC
Confidence 99999976432332 222 24567799999999999888776 48899999986322 335566677788999
Q ss_pred EEeecCCCEEEEEeCC-----------CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecC
Q 048511 228 ISWSRSSDYLLSVSHD-----------QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD 296 (351)
Q Consensus 228 v~~sp~~~~l~s~~~d-----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~ 296 (351)
++|+|++++|++++.+ +.|++||+.+++. ..+.....|...+.+++|+| ++.+|++++.
T Consensus 222 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~--------~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~ 291 (297)
T 2ojh_A 222 PHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV--------ETLFDLFGGQGTMNSPNWSP--DGDEFAYVRY 291 (297)
T ss_dssp EEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC--------EEEEEEEESTTTSCSCCBCT--TSSEEEEEEE
T ss_pred eEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc--------eeeeccCCCCcccccceECC--CCCEEEEEEe
Confidence 9999999999888765 5699999987652 12333345667799999999 8998887775
Q ss_pred CC
Q 048511 297 EK 298 (351)
Q Consensus 297 dg 298 (351)
|.
T Consensus 292 ~~ 293 (297)
T 2ojh_A 292 FP 293 (297)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 128
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=1.3e-23 Score=184.13 Aligned_cols=213 Identities=11% Similarity=0.076 Sum_probs=165.7
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEE-EeeCCCcEEEEecCCCcccceeecccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLV-SSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
++.|++|++||+.+ ++ .+..+..|. .|.+++|+ +++++|+ +++.|+.|++||+.+++....... .
T Consensus 50 ~~~d~~i~v~d~~~-~~--~~~~~~~~~-~v~~~~~s--------pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~--~ 115 (391)
T 1l0q_A 50 NAHSNDVSIIDTAT-NN--VIATVPAGS-SPQGVAVS--------PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT--G 115 (391)
T ss_dssp EGGGTEEEEEETTT-TE--EEEEEECSS-SEEEEEEC--------TTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--S
T ss_pred CCCCCeEEEEECCC-Ce--EEEEEECCC-CccceEEC--------CCCCEEEEEECCCCEEEEEECCCCeEEEEEeC--C
Confidence 45799999999988 73 455665544 89999999 7888775 455679999999998876554443 3
Q ss_pred cceeeeEeeecCCeE-EecCCceeEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCcee-EEeecCCeE
Q 048511 81 KEVISLASYIEGPVL-VAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSI-LSASMDKTM 150 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l-~s~~~d~~i 150 (351)
..+..++++++++.+ +++..++.+.++.. +..+ ..+.+++|+ ++++. + ++++.++.|
T Consensus 116 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~------~dg~~------l~~~~~~~~~v 182 (391)
T 1l0q_A 116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVT------PDGTK------VYVANFDSMSI 182 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEEC------TTSSE------EEEEETTTTEE
T ss_pred CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEEC------CCCCE------EEEEeCCCCEE
Confidence 467899999999977 56776777766653 2333 457899999 67766 5 677889999
Q ss_pred EEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe---eCCeEEEEEcccCcccCcccccccccccccEEE
Q 048511 151 MIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG---YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD 227 (351)
Q Consensus 151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~ 227 (351)
++||+++ +.....+. +...+.+++|+|+++++++++ .++.|++||+.++ +.+..+..+. .+.+
T Consensus 183 ~~~d~~~--~~~~~~~~------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~-----~~~~~~~~~~-~~~~ 248 (391)
T 1l0q_A 183 SVIDTVT--NSVIDTVK------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN-----KITARIPVGP-DPAG 248 (391)
T ss_dssp EEEETTT--TEEEEEEE------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-----EEEEEEECCS-SEEE
T ss_pred EEEECCC--CeEEEEEe------cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC-----eEEEEEecCC-CccE
Confidence 9999998 66655543 345789999999999999888 6899999999886 3455565554 5789
Q ss_pred EEeecCCCEE-EEEeCCCcEEEEcCCCcc
Q 048511 228 ISWSRSSDYL-LSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 228 v~~sp~~~~l-~s~~~dg~i~vwd~~~~~ 255 (351)
++|+|++++| ++++.|+.|++||+.+++
T Consensus 249 ~~~s~dg~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 249 IAVTPDGKKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred EEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence 9999999887 677889999999998876
No 129
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=3.5e-23 Score=177.86 Aligned_cols=271 Identities=11% Similarity=0.115 Sum_probs=180.1
Q ss_pred CCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCC-CcEEEEecC--CCcccceeeccc
Q 048511 3 GLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQD-KVIRIWKLA--LRGSSANTQSTY 79 (351)
Q Consensus 3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d-g~i~iwd~~--~~~~~~~~~~~~ 79 (351)
+.|+.|++|++...++...+..+ .|...+.+++|+ +++++|++++.+ +.|.+|++. ++..........
T Consensus 12 ~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s--------pdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 82 (343)
T 1ri6_A 12 PESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVS--------PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL 82 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEEC--------TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred CCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEEC--------CCCCEEEEeecCCCeEEEEEecCCCCceeecccccc
Confidence 57899999999643554444443 577889999999 889989888876 999999997 443322212222
Q ss_pred ccceeeeEeeecCCeEEecC-CceeEEEEEec----------cccccceEEEEecCCCCCCCCCcccCCCceeEEee-cC
Q 048511 80 RKEVISLASYIEGPVLVAGS-SSYQVSVESLL----------IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS-MD 147 (351)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~----------~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~-~d 147 (351)
...+..++++++++.++++. .++.+.++..- ......+.+++|+ ++++. +++++ .+
T Consensus 83 ~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s------~dg~~------l~~~~~~~ 150 (343)
T 1ri6_A 83 PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANIS------PDNRT------LWVPALKQ 150 (343)
T ss_dssp SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEEC------TTSSE------EEEEEGGG
T ss_pred CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEEC------CCCCE------EEEecCCC
Confidence 33678899999999776654 35555554431 1122357888999 78877 77776 89
Q ss_pred CeEEEEeccCCCcceEEEE--EeccccccccceEEEEEcCCCCEEEEEe-eCCeEEEEEccc--CcccCccccccccc--
Q 048511 148 KTMMIWQPEKTTGIWMNVV--TVGELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNVG--VDIDNWQPQKVPSG-- 220 (351)
Q Consensus 148 ~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~--~~~~~~~~~~~~~~-- 220 (351)
+.|++||+... +...... ... ......+..++|+|+++++++++ .++.|.+|++.. +..........+..
T Consensus 151 ~~v~~~d~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~ 227 (343)
T 1ri6_A 151 DRICLFTVSDD-GHLVAQDPAEVT--TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENF 227 (343)
T ss_dssp TEEEEEEECTT-SCEEEEEEEEEE--CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTC
T ss_pred CEEEEEEecCC-Cceeeecccccc--cCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccc
Confidence 99999999861 2221111 111 12234678899999999776665 789999999954 22110111111111
Q ss_pred -ccccEEEEEeecCCCEEE-EEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEec-CC
Q 048511 221 -HFAAVMDISWSRSSDYLL-SVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGA-DE 297 (351)
Q Consensus 221 -~~~~v~~v~~sp~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~d 297 (351)
....+..++|+|++++|+ ++..++.|.+||+..... ..+.+.....+.. +.+++|+| ++++|++++ .+
T Consensus 228 ~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~------~~~~~~~~~~~~~-~~~~~~s~--dg~~l~~~~~~~ 298 (343)
T 1ri6_A 228 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS------VLSKEGFQPTETQ-PRGFNVDH--SGKYLIAAGQKS 298 (343)
T ss_dssp CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC------CEEEEEEEECSSS-CCCEEECT--TSSEEEEECTTT
T ss_pred cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC------ceEEeeeecCCCc-cceEEECC--CCCEEEEecCCC
Confidence 133577899999998877 455789999999973210 1223333333433 88999999 888777766 78
Q ss_pred CeEEEEecC
Q 048511 298 KVARVFEAP 306 (351)
Q Consensus 298 g~v~vw~~~ 306 (351)
+.|.+|+++
T Consensus 299 ~~v~v~~~d 307 (343)
T 1ri6_A 299 HHISVYEIV 307 (343)
T ss_dssp CEEEEEEEE
T ss_pred CeEEEEEEc
Confidence 999999654
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=1.1e-22 Score=185.22 Aligned_cols=267 Identities=13% Similarity=0.092 Sum_probs=192.6
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEec--CCCcccceeeccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKL--ALRGSSANTQSTY 79 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~--~~~~~~~~~~~~~ 79 (351)
++.|++|.+||..+ ++ .+.++..+.. +.+++|+ +++++|++++.|++|++||+ .+.+....+. .
T Consensus 155 ~~~d~~V~v~D~~t-~~--~~~~i~~g~~-~~~v~~s--------pdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~--~ 220 (543)
T 1nir_A 155 LRDAGQIALVDGDS-KK--IVKVIDTGYA-VHISRMS--------ASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK--I 220 (543)
T ss_dssp EGGGTEEEEEETTT-CC--EEEEEECSTT-EEEEEEC--------TTSCEEEEEETTSEEEEEETTSSSCEEEEEEE--C
T ss_pred EcCCCeEEEEECCC-ce--EEEEEecCcc-cceEEEC--------CCCCEEEEECCCCeEEEEECcCCCCcEEEEEe--c
Confidence 46789999999998 64 4566763333 8899999 89999999999999999999 6666554444 3
Q ss_pred ccceeeeEeee----cCCeEEecCC-ceeEEEEE--------eccc----------ccc-ceEEEEecCCCCCCCCCccc
Q 048511 80 RKEVISLASYI----EGPVLVAGSS-SYQVSVES--------LLIG----------HED-WVYSVQWEPPSTAPSDGVSC 135 (351)
Q Consensus 80 ~~~~~~~~~~~----~~~~l~~~~~-~~~~~~~~--------~~~~----------h~~-~v~~l~~~p~~~~~~~~~~~ 135 (351)
......++++| +|++++++.. +..+.++. .+.. |.. .+..+.++| ....+
T Consensus 221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~-----~~~~~- 294 (543)
T 1nir_A 221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH-----EHPEF- 294 (543)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS-----SSSEE-
T ss_pred CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECC-----CCCEE-
Confidence 45678999999 9999988763 45555443 2222 222 688899994 23445
Q ss_pred CCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-eCCeEEEEEcccCcccCccc
Q 048511 136 QQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNVGVDIDNWQP 214 (351)
Q Consensus 136 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~ 214 (351)
+++...++.|.+||+.. ...+....+ .+...+..++|+|+++++++++ .+++|.+||..+++ +
T Consensus 295 -----~vs~~~~g~i~vvd~~~--~~~l~~~~i----~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~-----l 358 (543)
T 1nir_A 295 -----IVNVKETGKVLLVNYKD--IDNLTVTSI----GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR-----L 358 (543)
T ss_dssp -----EEEETTTTEEEEEECTT--SSSCEEEEE----ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE-----E
T ss_pred -----EEEECCCCeEEEEEecC--CCcceeEEe----ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCe-----E
Confidence 78888899999999987 333321111 1344577899999999877665 57999999999873 3
Q ss_pred cccccc----ccccEEEEEeecC-CCEEEEEe-CCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCC
Q 048511 215 QKVPSG----HFAAVMDISWSRS-SDYLLSVS-HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGN 288 (351)
Q Consensus 215 ~~~~~~----~~~~v~~v~~sp~-~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 288 (351)
+..+.. |.+....+ ++|+ +.+++++. .|++|.|||+.+.... ...|+.+..+..|+..+..++++| ++
T Consensus 359 ~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~---~~~~~~v~~l~~~g~~~~~v~~~p--dg 432 (543)
T 1nir_A 359 SALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHP---QYAWKKVAELQGQGGGSLFIKTHP--KS 432 (543)
T ss_dssp EEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT---TTBTSEEEEEECSCSCCCCEECCT--TC
T ss_pred EEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCc---hhcCeEEEEEEcCCCCceEEEcCC--CC
Confidence 444442 54433333 4777 66677765 5899999999773210 123567778888888889999999 99
Q ss_pred cEEEEec-------CCCeEEEEecC-chhh
Q 048511 289 HRFVSGA-------DEKVARVFEAP-LSFL 310 (351)
Q Consensus 289 ~~l~s~~-------~dg~v~vw~~~-~~~~ 310 (351)
++|++++ .++.|.|||+. ++..
T Consensus 433 ~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 433 SHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp CEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred CcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 9999987 27799999987 5444
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=1.9e-22 Score=178.15 Aligned_cols=227 Identities=12% Similarity=0.001 Sum_probs=173.7
Q ss_pred ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCC---cEEEEecCCCcccceeecccccc
Q 048511 6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDK---VIRIWKLALRGSSANTQSTYRKE 82 (351)
Q Consensus 6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg---~i~iwd~~~~~~~~~~~~~~~~~ 82 (351)
++|++||++. +. ...+.+|...|.+++|+ |++++|++++.|+ .|++||+.+++... .......
T Consensus 159 ~~i~i~d~~g-~~---~~~l~~~~~~v~~~~~S--------pdg~~la~~s~~~~~~~i~~~d~~tg~~~~--l~~~~~~ 224 (415)
T 2hqs_A 159 YELRVSDYDG-YN---QFVVHRSPQPLMSPAWS--------PDGSKLAYVTFESGRSALVIQTLANGAVRQ--VASFPRH 224 (415)
T ss_dssp EEEEEEETTS-CS---CEEEEEESSCEEEEEEC--------TTSSEEEEEECTTSSCEEEEEETTTCCEEE--EECCSSC
T ss_pred ceEEEEcCCC-CC---CEEEeCCCCcceeeEEc--------CCCCEEEEEEecCCCcEEEEEECCCCcEEE--eecCCCc
Confidence 7999999986 43 45677899999999999 8899999999885 99999999876542 2223456
Q ss_pred eeeeEeeecCCeEE-ecCCce--eEEEE-------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec-CC--e
Q 048511 83 VISLASYIEGPVLV-AGSSSY--QVSVE-------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM-DK--T 149 (351)
Q Consensus 83 ~~~~~~~~~~~~l~-~~~~~~--~~~~~-------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~-d~--~ 149 (351)
+.+++|+|+|+.|+ ++..++ .+.++ ..+..|...+.+++|+ |+++. |++++. ++ .
T Consensus 225 ~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s------pdg~~------l~~~s~~~g~~~ 292 (415)
T 2hqs_A 225 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWF------PDSQN------LAFTSDQAGRPQ 292 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEEC------TTSSE------EEEEECTTSSCE
T ss_pred ccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEEC------CCCCE------EEEEECCCCCcE
Confidence 78999999999877 444333 34433 3456788889999999 78888 887776 45 6
Q ss_pred EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC---CeEEEEEcccCcccCcccccccccccccEE
Q 048511 150 MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG---GAFHLWRNVGVDIDNWQPQKVPSGHFAAVM 226 (351)
Q Consensus 150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~ 226 (351)
|.+||+.. +... .+. .+...+.+++|+|+|++|++++.+ ..|++||+.+++ ...+..+. .+.
T Consensus 293 i~~~d~~~--~~~~-~l~-----~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~------~~~l~~~~-~~~ 357 (415)
T 2hqs_A 293 VYKVNING--GAPQ-RIT-----WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG------VQVLSSTF-LDE 357 (415)
T ss_dssp EEEEETTS--SCCE-ECC-----CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC------EEECCCSS-SCE
T ss_pred EEEEECCC--CCEE-EEe-----cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC------EEEecCCC-CcC
Confidence 77778876 4322 222 345578899999999999988875 589999998864 23344454 789
Q ss_pred EEEeecCCCEEEEEeCCC---cEEEEcCCCccccccCccceEEeccccccccceeEEEEee
Q 048511 227 DISWSRSSDYLLSVSHDQ---TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQ 284 (351)
Q Consensus 227 ~v~~sp~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 284 (351)
+++|+|+|++|++++.++ .|++||+..+. ...+..|...|.+++|+|
T Consensus 358 ~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~-----------~~~l~~~~~~v~~~~~~~ 407 (415)
T 2hqs_A 358 TPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-----------KARLPATDGQVKFPAWSP 407 (415)
T ss_dssp EEEECTTSSEEEEEEEETTEEEEEEEETTSCC-----------EEECCCSSSEEEEEEECC
T ss_pred CeEEcCCCCEEEEEEcCCCccEEEEEECCCCc-----------EEEeeCCCCCCcCCcccc
Confidence 999999999999888776 79999986443 344557888899999998
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=1e-21 Score=168.23 Aligned_cols=272 Identities=8% Similarity=0.064 Sum_probs=179.0
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC-CCcEEEEecCCCcc-cceeeccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ-DKVIRIWKLALRGS-SANTQSTY 79 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~-~~~~~~~~ 79 (351)
++.++.|++||.++ ++. ...+..+...+ +++|+ +++++|++++. ++.|.+||+.++.. ..... .
T Consensus 16 ~~~~~~v~~~d~~~-~~~--~~~~~~~~~~~-~~~~s--------~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~- 81 (331)
T 3u4y_A 16 EQHLRRISFFSTDT-LEI--LNQITLGYDFV-DTAIT--------SDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ-E- 81 (331)
T ss_dssp EGGGTEEEEEETTT-CCE--EEEEECCCCEE-EEEEC--------SSSCEEEEEESTTCEEEEEECSSSSCEEEEEE-E-
T ss_pred ecCCCeEEEEeCcc-cce--eeeEEccCCcc-eEEEc--------CCCCEEEEEeCCCCeEEEEECCCCceeEEecc-c-
Confidence 45689999999998 754 33444556666 99999 88887766655 89999999998776 33222 2
Q ss_pred ccceee-eEeeecCCeEEecCCce---eEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEe-ec
Q 048511 80 RKEVIS-LASYIEGPVLVAGSSSY---QVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSA-SM 146 (351)
Q Consensus 80 ~~~~~~-~~~~~~~~~l~~~~~~~---~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~-~~ 146 (351)
...... ++++|+|+.+++..... .+.++.. +. +.....+++|+ ++++. ++++ ..
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s------pdg~~------l~~~~~~ 148 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP-IPYDAVGIAIS------PNGNG------LILIDRS 148 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE-CCTTEEEEEEC------TTSSC------EEEEEET
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE-CCCCccceEEC------CCCCE------EEEEecC
Confidence 234445 89999999888665552 5655542 22 23456899999 78875 5544 55
Q ss_pred CCe-EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-eCCeEEEEEcccCcccCccccccccccccc
Q 048511 147 DKT-MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNVGVDIDNWQPQKVPSGHFAA 224 (351)
Q Consensus 147 d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~ 224 (351)
++. |.+|++... +..... ..... ........++|+|+++++++++ .++.|.+||+.+++. .+.+..+.. ...
T Consensus 149 ~~~~i~~~~~~~~-g~~~~~-~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~--~~~~~~~~~-~~~ 222 (331)
T 3u4y_A 149 SANTVRRFKIDAD-GVLFDT-GQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN--ITLLNAVGT-NNL 222 (331)
T ss_dssp TTTEEEEEEECTT-CCEEEE-EEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS--CEEEEEEEC-SSC
T ss_pred CCceEEEEEECCC-CcEeec-CCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc--cceeeeccC-CCC
Confidence 588 999999852 222111 11111 2334578999999999766555 689999999987631 011444443 356
Q ss_pred EEEEEeecCCCEEEEEe-CCCcEEEEcCCCccccccCccceEEec-cccccccc---eeEEEEeeeCCCcEEE-EecCCC
Q 048511 225 VMDISWSRSSDYLLSVS-HDQTTRVFAPWKNVASLMGENSWHEVA-RPQVHGHD---INCVTIIQGKGNHRFV-SGADEK 298 (351)
Q Consensus 225 v~~v~~sp~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~---i~~~~~~~~~~~~~l~-s~~~dg 298 (351)
+..++|+|+|++|+.++ .++.|.+||+.+++.. ....+. ....+... ...++|+| ++++|+ ++..++
T Consensus 223 ~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~v~~~~~~ 295 (331)
T 3u4y_A 223 PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLS-----FVKSFGHGLLIDPRPLFGANQMALNK--TETKLFISANISR 295 (331)
T ss_dssp CCCEEECTTSSEEEEECSSEEEEEEEETTTTEEE-----EEEEEECCCCCCCGGGTTCCCEEECT--TSSEEEEEETTTT
T ss_pred CceEEECCCCCEEEEEEcCCCEEEEEECCCCcee-----eecccccccccCCCCcccccceEECC--CCCEEEEecCCCC
Confidence 78899999999776554 5788999999887621 111111 11111222 35689999 887764 555678
Q ss_pred eEEEEecCchhhhce
Q 048511 299 VARVFEAPLSFLKTL 313 (351)
Q Consensus 299 ~v~vw~~~~~~~~~~ 313 (351)
.|.+||+....+..+
T Consensus 296 ~v~v~d~~~~~~~~~ 310 (331)
T 3u4y_A 296 ELKVFTISGKVVGYV 310 (331)
T ss_dssp EEEEEETTSCEEEEC
T ss_pred cEEEEEecCCcccce
Confidence 999999986554433
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=3.8e-22 Score=181.55 Aligned_cols=278 Identities=14% Similarity=0.083 Sum_probs=198.6
Q ss_pred CCCCceEEEEEc--cCCCceEEEEeeeecCCceeEEEeeCCcccCCCC----CccEEEEeeC-CCcEEEEecCCCcccce
Q 048511 2 GGLDNKIHLYRG--QRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEA----ISILLVSSSQ-DKVIRIWKLALRGSSAN 74 (351)
Q Consensus 2 g~~dg~i~vw~~--~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~----~~~~l~t~~~-dg~i~iwd~~~~~~~~~ 74 (351)
++.|++|++||+ .+ + ..+.++. +...+..++|+ + ++++|++++. +++|.+||..+.+.+..
T Consensus 196 ~~~d~~V~v~D~~~~t-~--~~~~~i~-~g~~p~~va~s--------p~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~ 263 (543)
T 1nir_A 196 IGRDARIDMIDLWAKE-P--TKVAEIK-IGIEARSVESS--------KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQI 263 (543)
T ss_dssp EETTSEEEEEETTSSS-C--EEEEEEE-CCSEEEEEEEC--------CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEE
T ss_pred ECCCCeEEEEECcCCC-C--cEEEEEe-cCCCcceEEeC--------CCcCCCCCEEEEEEccCCeEEEEecccccccee
Confidence 467899999999 55 5 4566776 45568999999 8 8999999884 89999999998877665
Q ss_pred eecc----------cccceeeeEeeecCCeEE-ecCCceeEEEEEec---------cccccceEEEEecCCCCCCCCCcc
Q 048511 75 TQST----------YRKEVISLASYIEGPVLV-AGSSSYQVSVESLL---------IGHEDWVYSVQWEPPSTAPSDGVS 134 (351)
Q Consensus 75 ~~~~----------~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~---------~~h~~~v~~l~~~p~~~~~~~~~~ 134 (351)
+... ....+..+.+++++..++ ....++.+.++..- ..+...+.++.|+ +++++
T Consensus 264 i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~s------pdg~~ 337 (543)
T 1nir_A 264 VSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWD------SSHRY 337 (543)
T ss_dssp EECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEEC------TTSCE
T ss_pred ecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceEC------CCCCE
Confidence 5431 122567888999776554 44555666555421 1244567788999 78886
Q ss_pred cCCCceeEEe-ecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCC-CCEEEEEe-eCCeEEEEEcccCcc--
Q 048511 135 CQQPSSILSA-SMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD-GRSILAHG-YGGAFHLWRNVGVDI-- 209 (351)
Q Consensus 135 ~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~-~dg~i~~~d~~~~~~-- 209 (351)
|+++ ..+++|.+||+.+ ++.+..+..... .|......+ ++|+ +..++++. .|++|.+||+.+...
T Consensus 338 ------l~va~~~~~~v~v~D~~t--g~l~~~i~~g~~-ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~ 407 (543)
T 1nir_A 338 ------FMTAANNSNKVAVIDSKD--RRLSALVDVGKT-PHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ 407 (543)
T ss_dssp ------EEEEEGGGTEEEEEETTT--TEEEEEEECSSS-BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT
T ss_pred ------EEEEecCCCeEEEEECCC--CeEEEeeccCCC-CCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch
Confidence 6554 5689999999998 777777664322 233323333 4777 55566665 579999999987321
Q ss_pred cCcccccccccccccEEEEEeecCCCEEEEEe-------CCCcEEEEcCCCccccccCccceEEe--c---cccccccce
Q 048511 210 DNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS-------HDQTTRVFAPWKNVASLMGENSWHEV--A---RPQVHGHDI 277 (351)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-------~dg~i~vwd~~~~~~~~~~~~~~~~~--~---~~~~~~~~i 277 (351)
..+++++++..|...+..|+++|++++|++++ .+++|.|||+.+.+.. .+.+ . .+..+...+
T Consensus 408 ~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~------~~~~~v~~~~~~~~~~~~~ 481 (543)
T 1nir_A 408 YAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK------YQVLPIAEWADLGEGAKRV 481 (543)
T ss_dssp TBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC------CEEECHHHHHCCCSSCCEE
T ss_pred hcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC------eEEeechhhcccCCCCCce
Confidence 12477888998988889999999999999987 2679999999988731 1121 1 123456779
Q ss_pred eEEEEeeeCCCcEEEEe-----cCCCeEEEEecC-chhhhceee
Q 048511 278 NCVTIIQGKGNHRFVSG-----ADEKVARVFEAP-LSFLKTLNH 315 (351)
Q Consensus 278 ~~~~~~~~~~~~~l~s~-----~~dg~v~vw~~~-~~~~~~~~~ 315 (351)
..+.|++ +|+.++.+ +.|+.|.|||.. ++++++++.
T Consensus 482 ~~~~~~~--~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 523 (543)
T 1nir_A 482 VQPEYNK--RGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD 523 (543)
T ss_dssp EEEEECS--SSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred EeccCCC--CCCEEEEEeecCCCCCCeEEEEECCCceEEEeecC
Confidence 9999999 88887754 358999999987 777777664
No 134
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=6.2e-21 Score=164.46 Aligned_cols=268 Identities=11% Similarity=0.043 Sum_probs=177.4
Q ss_pred CCCCceEEEEEccC-CCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC---CCcEEEEecCCCcccceee-
Q 048511 2 GGLDNKIHLYRGQR-TGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ---DKVIRIWKLALRGSSANTQ- 76 (351)
Q Consensus 2 g~~dg~i~vw~~~~-~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~---dg~i~iwd~~~~~~~~~~~- 76 (351)
++.++.|.+|+++. .+++..+. ...+...+..++|+ ++++ |++++. ++.|.+|++.++.......
T Consensus 12 ~~~~~~i~v~~~d~~tg~~~~~~-~~~~~~~p~~~a~s--------pdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~ 81 (347)
T 3hfq_A 12 KKTSQGIYQGTLDTTAKTLTNDG-LLAATQNPTYLALS--------AKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV 81 (347)
T ss_dssp SSSCCEEEEEEEETTTTEEEEEE-EEEECSCCCCEEEC--------TTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCCCEEEEEEcCCCCeEEEee-eeeccCCcceEEEc--------cCCe-EEEEEecCCCceEEEEEecCCcEEEeeee
Confidence 34567788887764 25544433 34456778899999 8888 555544 6899999997654322111
Q ss_pred cccccceeeeEeeecCCeEEecC-CceeEEEEEec-----------cc---------cccceEEEEecCCCCCCCCCccc
Q 048511 77 STYRKEVISLASYIEGPVLVAGS-SSYQVSVESLL-----------IG---------HEDWVYSVQWEPPSTAPSDGVSC 135 (351)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~-----------~~---------h~~~v~~l~~~p~~~~~~~~~~~ 135 (351)
......+..++++++|+.++++. .++.+.++..- .. +...+.+++|+ +++++
T Consensus 82 ~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s------pdg~l- 154 (347)
T 3hfq_A 82 VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT------PDNRL- 154 (347)
T ss_dssp EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC------TTSCE-
T ss_pred ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC------CCCcE-
Confidence 22345677899999999887765 55555554431 10 11237789999 67778
Q ss_pred CCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEE-eeCCeEEEEEccc--CcccCc
Q 048511 136 QQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAH-GYGGAFHLWRNVG--VDIDNW 212 (351)
Q Consensus 136 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~~~d~~~--~~~~~~ 212 (351)
+++...++.|.+||+... +......... . .....+..++|+|+|++++++ ..++.|.+|++.. ++.
T Consensus 155 -----~v~~~~~~~v~~~~~~~~-g~~~~~~~~~-~-~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~--- 223 (347)
T 3hfq_A 155 -----AVIDLGSDKVYVYNVSDA-GQLSEQSVLT-M-EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF--- 223 (347)
T ss_dssp -----EEEETTTTEEEEEEECTT-SCEEEEEEEE-C-CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE---
T ss_pred -----EEEeCCCCEEEEEEECCC-CcEEEeeeEE-c-CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce---
Confidence 888888999999999831 4332221111 1 122357789999999976664 5678999999874 321
Q ss_pred ccccccccc------cccEEEEEeecCCCEE-EEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeee
Q 048511 213 QPQKVPSGH------FAAVMDISWSRSSDYL-LSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQG 285 (351)
Q Consensus 213 ~~~~~~~~~------~~~v~~v~~sp~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 285 (351)
..+..+... ...+..++|+|+|++| ++...++.|.+|++.... .+..+.....++..+..++|+|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g-------~~~~~~~~~~~~~~~~~~~~sp- 295 (347)
T 3hfq_A 224 TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG-------HLTLIQQISTEGDFPRDFDLDP- 295 (347)
T ss_dssp EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG-------CEEEEEEEECSSSCCCEEEECT-
T ss_pred EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC-------cEEEeEEEecCCCCcCeEEECC-
Confidence 112222211 1458899999999987 455668999999997432 2234444445566689999999
Q ss_pred CCCcEEEEec-CCCeEEEEecC
Q 048511 286 KGNHRFVSGA-DEKVARVFEAP 306 (351)
Q Consensus 286 ~~~~~l~s~~-~dg~v~vw~~~ 306 (351)
++++|++++ .++.|.+|+++
T Consensus 296 -dg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 296 -TEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp -TSSEEEEEETTTTEEEEEEEC
T ss_pred -CCCEEEEEEcCCCcEEEEEEe
Confidence 888777666 55999999553
No 135
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=4.9e-20 Score=159.73 Aligned_cols=268 Identities=15% Similarity=0.152 Sum_probs=175.8
Q ss_pred CCCCceEEEEEccC-CCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCC----CcEEEEecCCC-ccccee
Q 048511 2 GGLDNKIHLYRGQR-TGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQD----KVIRIWKLALR-GSSANT 75 (351)
Q Consensus 2 g~~dg~i~vw~~~~-~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d----g~i~iwd~~~~-~~~~~~ 75 (351)
++.++.|++|+++. .+++..+..+ |...+..++|+ +++++|++++.+ +.|.+|++... ..+...
T Consensus 23 ~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~s--------pdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 23 SGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPS--------ADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp SSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEEC--------TTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred CCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEEC--------CCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 35678899997743 1666555555 77888999999 889999999876 79999998764 222222
Q ss_pred ec--ccccceeeeEeeecCCeEEecC-CceeEEEEEeccc----------------------cccceEEEEecCCCCCCC
Q 048511 76 QS--TYRKEVISLASYIEGPVLVAGS-SSYQVSVESLLIG----------------------HEDWVYSVQWEPPSTAPS 130 (351)
Q Consensus 76 ~~--~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~----------------------h~~~v~~l~~~p~~~~~~ 130 (351)
.. ........+++ +++.++++. .++.+.++..-.. +...+.+++|+ |
T Consensus 93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s------p 164 (361)
T 3scy_A 93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRIT------P 164 (361)
T ss_dssp EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEEC------T
T ss_pred eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEEC------C
Confidence 11 12234555555 777666654 4555655543110 11234789999 7
Q ss_pred CCcccCCCceeEE-eecCCeEEEEeccCCCc----c-eE-----EEEEeccccccccceEEEEEcCCCCEEEEEe-eCCe
Q 048511 131 DGVSCQQPSSILS-ASMDKTMMIWQPEKTTG----I-WM-----NVVTVGELSHSALGFYGGHWSPDGRSILAHG-YGGA 198 (351)
Q Consensus 131 ~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~----~-~~-----~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~ 198 (351)
++++ +++ ...++.|.+|++....+ + .. .... .........++|+|+++++++++ .++.
T Consensus 165 dg~~------l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~spdg~~l~v~~~~~~~ 234 (361)
T 3scy_A 165 DGKY------LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFK----VAPGSGPRHLIFNSDGKFAYLINEIGGT 234 (361)
T ss_dssp TSSE------EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE----CCTTCCEEEEEECTTSSEEEEEETTTCE
T ss_pred CCCE------EEEEeCCCCEEEEEEEcCCCCcccccceeeccccccee----cCCCCCCeEEEEcCCCCEEEEEcCCCCe
Confidence 8885 544 44589999999986433 2 11 1111 12344578999999999888777 6899
Q ss_pred EEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC--CCcEEEEcCCCccccccCccceEEeccccccccc
Q 048511 199 FHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH--DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHD 276 (351)
Q Consensus 199 i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (351)
|.+|++.++.......+.....+...+..++|+|+|++|+++.. ++.|.+|++..... .+..+..... +..
T Consensus 235 v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g------~~~~~~~~~~-g~~ 307 (361)
T 3scy_A 235 VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNG------TLTKVGYQLT-GIH 307 (361)
T ss_dssp EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTC------CEEEEEEEEC-SSC
T ss_pred EEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCC------cEEEeeEecC-CCC
Confidence 99999986542111222233334456789999999999876655 48999999863210 1223333323 456
Q ss_pred eeEEEEeeeCCCcEEEEec-CCCeEEEEecC
Q 048511 277 INCVTIIQGKGNHRFVSGA-DEKVARVFEAP 306 (351)
Q Consensus 277 i~~~~~~~~~~~~~l~s~~-~dg~v~vw~~~ 306 (351)
+.+++|+| ++++|++++ .++.|.+|+++
T Consensus 308 ~~~~~~sp--dg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 308 PRNFIITP--NGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp CCEEEECT--TSCEEEEEETTTTEEEEEEEC
T ss_pred CceEEECC--CCCEEEEEECCCCCEEEEEEE
Confidence 88999999 898777776 78999997654
No 136
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=5.3e-22 Score=175.91 Aligned_cols=221 Identities=12% Similarity=0.045 Sum_probs=152.2
Q ss_pred CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEE
Q 048511 29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES 108 (351)
Q Consensus 29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 108 (351)
...++.++++ +++.++++++.|+ +++|+........... . ... .+... .. .
T Consensus 36 ~~~~n~lavs--------~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~-~---~~~---------~~~~~------~~-~ 86 (434)
T 2oit_A 36 KERSSLLAVS--------NKYGLVFAGGASG-LQIFPTKNLLIQNKPG-D---DPN---------KIVDK------VQ-G 86 (434)
T ss_dssp CSCCBCEEEE--------TTTTEEEEEETTE-EEEEEHHHHCCCCCTT-C---CTT---------CEEEC------CC-C
T ss_pred CCCccEEEEe--------cCCCEEEEECCCE-EEEEEchHhhhhcccc-c---Ccc---------ccccc------Cc-c
Confidence 3468899999 7888999999888 8998864321110000 0 000 00000 00 0
Q ss_pred eccccccceEEEEecCCCCCCCCCcccCCCceeE----EeecCCeEEEEeccCC-----Cc-ceEEEEEeccccccccce
Q 048511 109 LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSIL----SASMDKTMMIWQPEKT-----TG-IWMNVVTVGELSHSALGF 178 (351)
Q Consensus 109 ~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~----s~~~d~~i~iwd~~~~-----~~-~~~~~~~~~~~~~~~~~i 178 (351)
....+...|.+++|+ +++++ |+ +++.|+.|+|||++.. +. ..+..+. ...+|...|
T Consensus 87 ~~~~~~~~v~~l~~s------pdg~~------lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~h~~~V 152 (434)
T 2oit_A 87 LLVPMKFPIHHLALS------CDNLT------LSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHK--LLKDAGGMV 152 (434)
T ss_dssp EEECCSSCEEEEEEC------TTSCE------EEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEE--CCCSGGGSE
T ss_pred ccccCCCcccEEEEc------CCCCE------EEEEEeccCCCceEEEEEccccccCCcCCcceeeeee--ccCCCCCce
Confidence 012356789999999 78888 88 7889999999999762 00 1111222 234688899
Q ss_pred EEEEEcCC-CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccc
Q 048511 179 YGGHWSPD-GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVAS 257 (351)
Q Consensus 179 ~~i~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~ 257 (351)
.+++|+|+ +.+|++++.||+|++||++++. ......+|...|++++|+|+|++|++|+.||.|++||++ +..
T Consensus 153 ~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~-----~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~- 225 (434)
T 2oit_A 153 IDMKWNPTVPSMVAVCLADGSIAVLQVTETV-----KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE- 225 (434)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEEESSSE-----EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCE-
T ss_pred EEEEECCCCCCEEEEEECCCeEEEEEcCCCc-----ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc-
Confidence 99999998 7899999999999999998862 344555688899999999999999999999999999997 321
Q ss_pred ccCccceEEecccc----ccccceeEEEEeeeCCCcEEEE-ecCCC------eEEEEecCc
Q 048511 258 LMGENSWHEVARPQ----VHGHDINCVTIIQGKGNHRFVS-GADEK------VARVFEAPL 307 (351)
Q Consensus 258 ~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~l~s-~~~dg------~v~vw~~~~ 307 (351)
...+.... .|...+.+++|++ ++.++++ ...|| .+++|++..
T Consensus 226 ------~~~~~~~~~~~~~~~~~v~~v~w~~--~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 226 ------KKVIPCPPFYESDHPVRVLDVLWIG--TYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp ------EEEECCCTTCCTTSCEEEEEEEEEE--TTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred ------cccccCCcccCCCCceeEEEEEEec--CceEEEEEccCCCccCCCCceEEEEecc
Confidence 11121111 2334799999999 7776644 33443 389999873
No 137
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=4.2e-21 Score=164.49 Aligned_cols=261 Identities=10% Similarity=0.043 Sum_probs=180.6
Q ss_pred CCCCceEEEEEccCCCceEEEEeeee-cCC-ceeEEEeeCCcccCCCCCccEE-EEeeCCCcEEEEecCCCcccceeecc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKG-HTD-WIRSLDFSLPVCTSGEAISILL-VSSSQDKVIRIWKLALRGSSANTQST 78 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~-h~~-~V~~l~~~~~~~~~~~~~~~~l-~t~~~dg~i~iwd~~~~~~~~~~~~~ 78 (351)
++.+++|++||+.+ ++ .+..+.. +.. .+..++|+ ++++++ ++++.++.|.+||+.+++........
T Consensus 7 ~~~~~~v~~~d~~~-~~--~~~~~~~~~~~~~~~~~~~s--------~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~ 75 (337)
T 1pby_B 7 PARPDKLVVIDTEK-MA--VDKVITIADAGPTPMVPMVA--------PGGRIAYATVNKSESLVKIDLVTGETLGRIDLS 75 (337)
T ss_dssp EETTTEEEEEETTT-TE--EEEEEECTTCTTCCCCEEEC--------TTSSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred cCCCCeEEEEECCC-Cc--EEEEEEcCCCCCCccceEEc--------CCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcC
Confidence 56799999999998 64 3444442 222 48899999 788665 55666889999999988765544432
Q ss_pred c----ccceeeeEeeecCCeEEecC------------CceeEEEEEecc-------ccccceEEEEecCCCCCCCCCccc
Q 048511 79 Y----RKEVISLASYIEGPVLVAGS------------SSYQVSVESLLI-------GHEDWVYSVQWEPPSTAPSDGVSC 135 (351)
Q Consensus 79 ~----~~~~~~~~~~~~~~~l~~~~------------~~~~~~~~~~~~-------~h~~~v~~l~~~p~~~~~~~~~~~ 135 (351)
. ...+..++++++|+.++++. .+..+.++..-. .....+.+++|+ ++++.
T Consensus 76 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s------~dg~~- 148 (337)
T 1pby_B 76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWA------RDGSK- 148 (337)
T ss_dssp BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEEC------TTSSC-
T ss_pred CcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEEC------CCCCE-
Confidence 2 12566889999999888774 345555443211 113356778899 78887
Q ss_pred CCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-C-----------------
Q 048511 136 QQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-G----------------- 197 (351)
Q Consensus 136 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g----------------- 197 (351)
|+++ ++.|.+||+.+ +.....+.... ... .+.|+|+++.++..+.. +
T Consensus 149 -----l~~~--~~~i~~~d~~~--~~~~~~~~~~~---~~~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (337)
T 1pby_B 149 -----LYGL--GRDLHVMDPEA--GTLVEDKPIQS---WEA---ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPAD 213 (337)
T ss_dssp -----EEEE--SSSEEEEETTT--TEEEEEECSTT---TTT---TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTS
T ss_pred -----EEEe--CCeEEEEECCC--CcEeeeeeccc---cCC---CceeCCCccEEeeeccCCCceeeeeecccccccccc
Confidence 7777 68899999998 66655544211 112 23788988866554432 2
Q ss_pred ------eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccc
Q 048511 198 ------AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQ 271 (351)
Q Consensus 198 ------~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 271 (351)
.|.+||+.+++. . ...+..+...+.+++|+|++++|+++ ++.|++||+.+++ .+..+.
T Consensus 214 ~~~~~~~v~~~d~~~~~~---~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~----------~~~~~~ 277 (337)
T 1pby_B 214 PTAYRTGLLTMDLETGEM---A-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA----------SIKRVP 277 (337)
T ss_dssp GGGEEEEEEEEETTTCCE---E-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE----------EEEEEE
T ss_pred ccccccceEEEeCCCCCc---e-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCc----------Ccceec
Confidence 478999988642 1 22334455678899999999999887 7999999998775 222222
Q ss_pred ccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhcee
Q 048511 272 VHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLN 314 (351)
Q Consensus 272 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~ 314 (351)
....+.+++|+| ++++|++++.++.|++||+. ++.+..+.
T Consensus 278 -~~~~~~~~~~s~--dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 278 -LPHSYYSVNVST--DGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp -CSSCCCEEEECT--TSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred -CCCceeeEEECC--CCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 224578999999 89988888999999999987 55555543
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.86 E-value=7.3e-20 Score=172.65 Aligned_cols=260 Identities=12% Similarity=0.065 Sum_probs=179.5
Q ss_pred CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCC-----Ccccceeecc
Q 048511 4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLAL-----RGSSANTQST 78 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~-----~~~~~~~~~~ 78 (351)
.|+.|++||+.+ ++. ..+..|...+.+++|+ |+|++|+++ .|+.|.+|++.+ ++........
T Consensus 99 ~~~~i~~~d~~~-~~~---~~l~~~~~~~~~~~~S--------pdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~ 165 (706)
T 2z3z_A 99 TQGGLVGFDMLA-RKV---TYLFDTNEETASLDFS--------PVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDG 165 (706)
T ss_dssp ETTEEEEEETTT-TEE---EEEECCTTCCTTCEEC--------TTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCC
T ss_pred ECCEEEEEECCC-Cce---EEccCCcccccCCcCC--------CCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCC
Confidence 468999999988 643 3445567789999999 889999985 689999999987 6544322222
Q ss_pred cc-------------cceeeeEeeecCCeEEecC---------------------------------CceeEEEEEe---
Q 048511 79 YR-------------KEVISLASYIEGPVLVAGS---------------------------------SSYQVSVESL--- 109 (351)
Q Consensus 79 ~~-------------~~~~~~~~~~~~~~l~~~~---------------------------------~~~~~~~~~~--- 109 (351)
.. .....+.|+|+|+.|+.+. ....+.++..
T Consensus 166 ~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~ 245 (706)
T 2z3z_A 166 TETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG 245 (706)
T ss_dssp BTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT
T ss_pred CCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC
Confidence 11 1147889999999998875 2334444321
Q ss_pred ----c---cccccceEEEEecCCCCCCCCCcccCCCceeEEeecCC-----eEEEEeccCCCcceEEEEEeccccccccc
Q 048511 110 ----L---IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDK-----TMMIWQPEKTTGIWMNVVTVGELSHSALG 177 (351)
Q Consensus 110 ----~---~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 177 (351)
+ ..|...+.+++|+ +|++. |++++.++ .|++||+.+ +.....+...........
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~s------pdg~~------l~~~~~~~~~~~~~v~~~d~~~--g~~~~~~~~~~~~~~~~~ 311 (706)
T 2z3z_A 246 KTVYLQTGEPKEKFLTNLSWS------PDENI------LYVAEVNRAQNECKVNAYDAET--GRFVRTLFVETDKHYVEP 311 (706)
T ss_dssp EEEECCCCSCTTCEEEEEEEC------TTSSE------EEEEEECTTSCEEEEEEEETTT--CCEEEEEEEEECSSCCCC
T ss_pred ceEeeccCCCCceeEeeEEEE------CCCCE------EEEEEeCCCCCeeEEEEEECCC--CceeeEEEEccCCCeECc
Confidence 1 1456679999999 79998 88888776 899999988 522222221111111112
Q ss_pred eEEEEEcC--CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEE-EEeecCCCEEEEEeC-CC----cEEEE
Q 048511 178 FYGGHWSP--DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD-ISWSRSSDYLLSVSH-DQ----TTRVF 249 (351)
Q Consensus 178 i~~i~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~-v~~sp~~~~l~s~~~-dg----~i~vw 249 (351)
+..++|+| ++++++++..++.++||++.... ..+..+..+...+.. ++|+|+++.|+.++. ++ .|..|
T Consensus 312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~----~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 387 (706)
T 2z3z_A 312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG----RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI 387 (706)
T ss_dssp CSCCEECTTCSSEEEEEECTTSSCEEEEEETTS----CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred cCCceeecCCCCEEEEEEccCCccEEEEEECCC----CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence 46789999 99999999999999999886221 335566667777876 799999988765554 44 56667
Q ss_pred cCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC----CeEEEEecCch
Q 048511 250 APWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE----KVARVFEAPLS 308 (351)
Q Consensus 250 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d----g~v~vw~~~~~ 308 (351)
|+.++.. ..+ .+...+.+++|+| ++++|+....+ +.|++||+.+.
T Consensus 388 d~~~~~~--------~~l----~~~~~~~~~~~sp--dg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 388 DIKGGKT--------KDL----TPESGMHRTQLSP--DGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp ETTCCCC--------EES----CCSSSEEEEEECT--TSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred EcCCCCc--------eec----cCCCceEEEEECC--CCCEEEEEecCCCCCcEEEEEECCCC
Confidence 7655431 122 2455688999999 88888765433 56999998743
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.86 E-value=6e-20 Score=173.69 Aligned_cols=264 Identities=8% Similarity=0.016 Sum_probs=171.0
Q ss_pred CCCceEEEEEccCCCceEEEEeeeecCC---ceeEEEeeCCcccCCCCCccEEEEeeCC---------CcEEEEecCCCc
Q 048511 3 GLDNKIHLYRGQRTGKFVRACELKGHTD---WIRSLDFSLPVCTSGEAISILLVSSSQD---------KVIRIWKLALRG 70 (351)
Q Consensus 3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~---~V~~l~~~~~~~~~~~~~~~~l~t~~~d---------g~i~iwd~~~~~ 70 (351)
+.||+|++||+.+ ++. ...+.+|.. .|.+++|+ |+|++|++++.+ +.|.+||+.+++
T Consensus 34 ~~dg~i~~~d~~~-g~~--~~~~~~~~~~~~~v~~~~~S--------pDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 102 (723)
T 1xfd_A 34 EQKGTVRLWNVET-NTS--TVLIEGKKIESLRAIRYEIS--------PDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD 102 (723)
T ss_dssp CSSSCEEEBCGGG-CCC--EEEECTTTTTTTTCSEEEEC--------TTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred eCCCCEEEEECCC-CcE--EEEeccccccccccceEEEC--------CCCCEEEEEecCccceeecceeeEEEEECCCCc
Confidence 5789999999998 643 345556654 49999999 899999999875 778899999876
Q ss_pred ccceee-cccccceeeeEeeecCCeEEecCCceeEEEEE--------eccccccc------------------eEEEEec
Q 048511 71 SSANTQ-STYRKEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDW------------------VYSVQWE 123 (351)
Q Consensus 71 ~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~------------------v~~l~~~ 123 (351)
...... ......+..++|+|+|+.++.+.. ..+.++. ....+... +.+++|+
T Consensus 103 ~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~S 181 (723)
T 1xfd_A 103 PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWS 181 (723)
T ss_dssp CEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEEC
T ss_pred eEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEEC
Confidence 521111 111223678899999998887654 3343332 12222222 2789999
Q ss_pred CCCCCCCCCcccCCCceeEEeecCC----------------------------------eEEEEeccCCCcceEEEEEec
Q 048511 124 PPSTAPSDGVSCQQPSSILSASMDK----------------------------------TMMIWQPEKTTGIWMNVVTVG 169 (351)
Q Consensus 124 p~~~~~~~~~~~~~~~~l~s~~~d~----------------------------------~i~iwd~~~~~~~~~~~~~~~ 169 (351)
||++. |++++.|+ .|++||+.+ +.....+...
T Consensus 182 ------pDg~~------la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~--~~~~~~l~~~ 247 (723)
T 1xfd_A 182 ------PDGTR------LAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG--PTHDLEMMPP 247 (723)
T ss_dssp ------TTSSE------EEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS--SCCCEECCCC
T ss_pred ------CCCCE------EEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC--CceeEEeeCC
Confidence 79998 98887653 789999987 4432333210
Q ss_pred -cccccccceEEEEEcCCCCEEEEEeeC----CeEEEEEcccCcccCccccccccc-ccccE----EEEEeecCCCEEEE
Q 048511 170 -ELSHSALGFYGGHWSPDGRSILAHGYG----GAFHLWRNVGVDIDNWQPQKVPSG-HFAAV----MDISWSRSSDYLLS 239 (351)
Q Consensus 170 -~~~~~~~~i~~i~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~~~~~-~~~~v----~~v~~sp~~~~l~s 239 (351)
....+...+..++|+|||+++++.... ..|++||+.+++ +...+.. +...+ ..++|+|||+.|+.
T Consensus 248 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~-----~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 322 (723)
T 1xfd_A 248 DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV-----CTKKHEDESEAWLHRQNEEPVFSKDGRKFFF 322 (723)
T ss_dssp CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC-----EEEEEEEECSSCCCCCCCCCEECTTSCSEEE
T ss_pred ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc-----ceEEEEeccCCEEeccCCCceEcCCCCeEEE
Confidence 011235678999999999988776543 579999998864 2222222 33333 37899999997765
Q ss_pred --EeCCC------cEEEEcCCCccccccCccceEEeccccccccceeE-EEEeeeCCCcEEEEecC-C--CeEEEEecC
Q 048511 240 --VSHDQ------TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINC-VTIIQGKGNHRFVSGAD-E--KVARVFEAP 306 (351)
Q Consensus 240 --~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~l~s~~~-d--g~v~vw~~~ 306 (351)
...++ .|++||+..+... . ....+..+...+.. ++|+| +++.|+..+. + +.++||+++
T Consensus 323 ~~~~~~~~~~~~~~l~~~d~~~~~~~----~---~~~~l~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 323 IRAIPQGGRGKFYHITVSSSQPNSSN----D---NIQSITSGDWDVTKILAYDE--KGNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp EEEECCSSSSCEEEEEEECSSCCSSS----C---CCCBSCCSSSCEEEEEEEET--TTTEEEEEESSSCTTCCEEEEEC
T ss_pred EEecccCCCcceeEEEEEeccCCCCc----c---ceeEeecCCeEEEeeeEEcC--CCCEEEEEEcCCCCcceEEEEEe
Confidence 44566 5777773222200 0 01222222233444 68999 8888875554 4 789999975
No 140
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.86 E-value=3e-20 Score=171.42 Aligned_cols=232 Identities=10% Similarity=-0.003 Sum_probs=163.3
Q ss_pred CCceeEEEeeCCcccCCCCCccEEEEeeC-CCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCC---ceeE
Q 048511 29 TDWIRSLDFSLPVCTSGEAISILLVSSSQ-DKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSS---SYQV 104 (351)
Q Consensus 29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~ 104 (351)
..+|++++|+ +||++||+++. ||+++||++..+.. ..+.......+..++|+|+ ++++++.. +...
T Consensus 21 ~~~~~~~~~~--------~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~ 90 (582)
T 3o4h_A 21 AVEKYSLQGV--------VDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQH 90 (582)
T ss_dssp HSCEEEEEEE--------ETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCE
T ss_pred ccchheeecC--------CCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcce
Confidence 5689999999 89999999887 99999999865443 2232222246778889988 66665443 2222
Q ss_pred EEEEe-c--cc------cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc
Q 048511 105 SVESL-L--IG------HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA 175 (351)
Q Consensus 105 ~~~~~-~--~~------h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 175 (351)
.++.. . .+ ....+...+|+ ++++. ..+++++.++ +.+||+.+ +....... +.
T Consensus 91 ~l~~~~~~~~g~~~~l~~~~~~~~~~~s------~dg~~----~~~~s~~~~~-~~l~d~~~--g~~~~l~~------~~ 151 (582)
T 3o4h_A 91 ALFKVNTSRPGEEQRLEAVKPMRILSGV------DTGEA----VVFTGATEDR-VALYALDG--GGLRELAR------LP 151 (582)
T ss_dssp EEEEEETTSTTCCEECTTSCSBEEEEEE------ECSSC----EEEEEECSSC-EEEEEEET--TEEEEEEE------ES
T ss_pred EEEEEeccCCCccccccCCCCceeeeeC------CCCCe----EEEEecCCCC-ceEEEccC--CcEEEeec------CC
Confidence 22211 1 11 11234456777 45532 0145555554 55999987 54433322 11
Q ss_pred cceEEEEEcCCCCEEEEEeeC----CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCC--cEEEE
Q 048511 176 LGFYGGHWSPDGRSILAHGYG----GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQ--TTRVF 249 (351)
Q Consensus 176 ~~i~~i~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg--~i~vw 249 (351)
. .+++|+|||++|++++.+ +.|++||+.+++ ...+..|...+..++|+|||++|+++..++ .|++|
T Consensus 152 ~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~------~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~ 223 (582)
T 3o4h_A 152 G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG------LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTV 223 (582)
T ss_dssp S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC------CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEE
T ss_pred C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC------ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEE
Confidence 2 789999999999988877 789999998864 346677888899999999999999888888 89999
Q ss_pred cCCCccccccCccceEEeccccccccceeEEE--------EeeeCCCcEEEEecCCCeEEEEecCchhhh
Q 048511 250 APWKNVASLMGENSWHEVARPQVHGHDINCVT--------IIQGKGNHRFVSGADEKVARVFEAPLSFLK 311 (351)
Q Consensus 250 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~ 311 (351)
|+.+++ .. ....|...+..++ |+| |+.++++++.|+.+++|++ ++.+.
T Consensus 224 d~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~~~sp--dg~~~~~~~~~g~~~l~~~-g~~~~ 279 (582)
T 3o4h_A 224 DPRDGS----------VE-DLELPSKDFSSYRPTAITWLGYLP--DGRLAVVARREGRSAVFID-GERVE 279 (582)
T ss_dssp CTTTCC----------EE-ECCCSCSHHHHHCCSEEEEEEECT--TSCEEEEEEETTEEEEEET-TEEEC
T ss_pred cCCCCc----------EE-EccCCCcChhhhhhccccceeEcC--CCcEEEEEEcCCcEEEEEE-CCeec
Confidence 998776 22 3445666666677 999 8889999999999999999 65443
No 141
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.86 E-value=3.3e-20 Score=175.99 Aligned_cols=260 Identities=9% Similarity=0.027 Sum_probs=177.9
Q ss_pred eEEEEEccCCCceEEEEeeeecC----------------------CceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEE
Q 048511 7 KIHLYRGQRTGKFVRACELKGHT----------------------DWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIW 64 (351)
Q Consensus 7 ~i~vw~~~~~~~~~~~~~~~~h~----------------------~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iw 64 (351)
+|++||+.+ ++...+.....+. ..|.+++|+ ++|++|++++. +.|.+|
T Consensus 65 ~i~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S--------pDg~~l~~~~~-~~i~~~ 134 (741)
T 2ecf_A 65 DLWSYDIGS-GQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS--------PDAQRLLFPLG-GELYLY 134 (741)
T ss_dssp EEEEEETTT-CCEEEEECGGGTC--------------------CCEESCCCEEC--------TTSSEEEEEET-TEEEEE
T ss_pred EEEEEECCC-CceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC--------CCCCEEEEEeC-CcEEEE
Confidence 899999998 7554443333332 348899999 89999999986 899999
Q ss_pred ecCCC---cccceeecccccceeeeEeeecCCeEEecCCceeEEEEEe--------ccccccc----------------e
Q 048511 65 KLALR---GSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDW----------------V 117 (351)
Q Consensus 65 d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~h~~~----------------v 117 (351)
|+.++ .... + ......+..+.|+|+|+.++.+... .+.++.. ...+... +
T Consensus 135 d~~~~~~~~~~~-l-~~~~~~~~~~~~SPDG~~la~~~~~-~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~ 211 (741)
T 2ecf_A 135 DLKQEGKAAVRQ-L-THGEGFATDAKLSPKGGFVSFIRGR-NLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRH 211 (741)
T ss_dssp ESSSCSTTSCCB-C-CCSSSCEEEEEECTTSSEEEEEETT-EEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCC
T ss_pred ECCCCCcceEEE-c-ccCCcccccccCCCCCCEEEEEeCC-cEEEEecCCCCEEEeccCCccceeccccceeeeeccccc
Confidence 99887 3322 2 2224567889999999988876543 4544432 1122221 4
Q ss_pred EEEEecCCCCCCCCCcccCCCceeEEeecCC---------------------------------eEEEEeccC-CCcceE
Q 048511 118 YSVQWEPPSTAPSDGVSCQQPSSILSASMDK---------------------------------TMMIWQPEK-TTGIWM 163 (351)
Q Consensus 118 ~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~---------------------------------~i~iwd~~~-~~~~~~ 163 (351)
..+.|+ ||++. |++++.|+ .|.+||+.+ .+.
T Consensus 212 ~~~~~S------pDg~~------l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~--- 276 (741)
T 2ecf_A 212 TGYWWA------PDDSA------IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT--- 276 (741)
T ss_dssp CSEEEC------TTSSC------EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC---
T ss_pred cceEEC------CCCCE------EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce---
Confidence 679999 79998 99998776 788889875 432
Q ss_pred EEEEeccccccccceEEEEEcCCCCEEEEEee-----CCeEEEEEcccCcccCcccccccccccc----cEEEEEeecCC
Q 048511 164 NVVTVGELSHSALGFYGGHWSPDGRSILAHGY-----GGAFHLWRNVGVDIDNWQPQKVPSGHFA----AVMDISWSRSS 234 (351)
Q Consensus 164 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-----dg~i~~~d~~~~~~~~~~~~~~~~~~~~----~v~~v~~sp~~ 234 (351)
..+.. ...+...+..++| |+|++|++++. +..|++||+.+++ ....+..+.. .+..++|+|||
T Consensus 277 ~~~~~--~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~-----~~~~~~~~~~~~~~~~~~~~~spdg 348 (741)
T 2ecf_A 277 QWIDL--GKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ-----QRVLAHETSPTWVPLHNSLRFLDDG 348 (741)
T ss_dssp EEECC--CSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC-----EEEEEEEECSSCCCCCSCCEECTTS
T ss_pred EEecC--CCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc-----eEEEEEcCCCCcCCcCCceEECCCC
Confidence 11211 1135667899999 99999987765 5689999998874 2333333332 34678999999
Q ss_pred CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEE-EEeeeCCCcEEE-EecCCC--eEEEEecC--ch
Q 048511 235 DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCV-TIIQGKGNHRFV-SGADEK--VARVFEAP--LS 308 (351)
Q Consensus 235 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~l~-s~~~dg--~v~vw~~~--~~ 308 (351)
+++++++.|+.++||.+.... . ...+..+...+..+ +|+| +++.|+ +++.++ .++||+++ +.
T Consensus 349 ~~~~~~~~~g~~~l~~~~~~~------~----~~~l~~~~~~v~~~~~~s~--dg~~l~~~~~~~~~~~~~l~~~~~~g~ 416 (741)
T 2ecf_A 349 SILWSSERTGFQHLYRIDSKG------K----AAALTHGNWSVDELLAVDE--KAGLAYFRAGIESARESQIYAVPLQGG 416 (741)
T ss_dssp CEEEEECTTSSCEEEEECSSS------C----EEESCCSSSCEEEEEEEET--TTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred eEEEEecCCCccEEEEEcCCC------C----eeeeeecceEEEeEeEEeC--CCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence 999999999988888775332 1 22333455667777 5999 887664 555565 89999864 44
Q ss_pred hhhcee
Q 048511 309 FLKTLN 314 (351)
Q Consensus 309 ~~~~~~ 314 (351)
..+.+.
T Consensus 417 ~~~~l~ 422 (741)
T 2ecf_A 417 QPQRLS 422 (741)
T ss_dssp CCEECC
T ss_pred Ceeecc
Confidence 444443
No 142
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=7.2e-20 Score=162.24 Aligned_cols=179 Identities=16% Similarity=0.177 Sum_probs=127.7
Q ss_pred ecCCceeEEEeeCCcccCCCCCccEEE----EeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCce
Q 048511 27 GHTDWIRSLDFSLPVCTSGEAISILLV----SSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSY 102 (351)
Q Consensus 27 ~h~~~V~~l~~~~~~~~~~~~~~~~l~----t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 102 (351)
.|.+.|++++|+ +++++|+ +++.|++|++||+.+........ ..
T Consensus 90 ~~~~~v~~l~~s--------pdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~------------------------~~ 137 (434)
T 2oit_A 90 PMKFPIHHLALS--------CDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQ------------------------KR 137 (434)
T ss_dssp CCSSCEEEEEEC--------TTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSS------------------------CC
T ss_pred cCCCcccEEEEc--------CCCCEEEEEEeccCCCceEEEEEccccccCCcCC------------------------cc
Confidence 356789999999 8899999 88999999999987541000000 00
Q ss_pred eEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEE
Q 048511 103 QVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGH 182 (351)
Q Consensus 103 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 182 (351)
.+.....+.+|...|.+++|+| .++.+ |++++.||+|++||+++ +....... .|...|.+++
T Consensus 138 ~~~~~~~~~~h~~~V~~v~~~p-----~~~~~------las~s~Dg~v~iwD~~~--~~~~~~~~-----~~~~~v~~v~ 199 (434)
T 2oit_A 138 PFAYHKLLKDAGGMVIDMKWNP-----TVPSM------VAVCLADGSIAVLQVTE--TVKVCATL-----PSTVAVTSVC 199 (434)
T ss_dssp CSEEEECCCSGGGSEEEEEECS-----SCTTE------EEEEETTSCEEEEEESS--SEEEEEEE-----CGGGCEEEEE
T ss_pred eeeeeeccCCCCCceEEEEECC-----CCCCE------EEEEECCCeEEEEEcCC--Ccceeecc-----CCCCceeEEE
Confidence 0012345678999999999995 33778 99999999999999998 54433332 5778899999
Q ss_pred EcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc-cccccEEEEEeecCCCEEEEE-eCCC------cEEEEcCCCc
Q 048511 183 WSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS-GHFAAVMDISWSRSSDYLLSV-SHDQ------TTRVFAPWKN 254 (351)
Q Consensus 183 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~l~s~-~~dg------~i~vwd~~~~ 254 (351)
|+|++++|++|+.||.|++||++.............. .|...|.+++|++++.++++. +.|| .+++|+++..
T Consensus 200 wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 200 WSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp ECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 9999999999999999999999832110000000111 234589999999998877543 3343 3899999865
Q ss_pred c
Q 048511 255 V 255 (351)
Q Consensus 255 ~ 255 (351)
.
T Consensus 280 ~ 280 (434)
T 2oit_A 280 E 280 (434)
T ss_dssp T
T ss_pred C
Confidence 3
No 143
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.85 E-value=6.8e-20 Score=173.82 Aligned_cols=240 Identities=9% Similarity=0.052 Sum_probs=171.2
Q ss_pred CCceeEEEeeCCcccCCCCCccEEEEeeC-CC-----cEEEEecCCCcccceeecccc----------------------
Q 048511 29 TDWIRSLDFSLPVCTSGEAISILLVSSSQ-DK-----VIRIWKLALRGSSANTQSTYR---------------------- 80 (351)
Q Consensus 29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~-dg-----~i~iwd~~~~~~~~~~~~~~~---------------------- 80 (351)
...|.+++|+ ++|++|++++. |+ .|.+||+.+++..........
T Consensus 36 ~~~~~~~~~S--------pdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (741)
T 2ecf_A 36 GPTLMKPKVA--------PDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAA 107 (741)
T ss_dssp CCCCEEEEEC--------TTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------C
T ss_pred CCCCCCceEe--------cCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhcc
Confidence 3468999999 89999999998 88 899999998765443322111
Q ss_pred -cceeeeEeeecCCeEEecCCceeEEEEEe----------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCe
Q 048511 81 -KEVISLASYIEGPVLVAGSSSYQVSVESL----------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT 149 (351)
Q Consensus 81 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~ 149 (351)
..+..++|+|+|+.|+.+.. ..+.++.. +..|...+.+++|+ |||+. |+.++ ++.
T Consensus 108 ~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~S------PDG~~------la~~~-~~~ 173 (741)
T 2ecf_A 108 MTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLS------PKGGF------VSFIR-GRN 173 (741)
T ss_dssp CEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEEC------TTSSE------EEEEE-TTE
T ss_pred ccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCC------CCCCE------EEEEe-CCc
Confidence 23678999999999888765 55554432 33466789999999 79998 88886 568
Q ss_pred EEEEeccCCCcceEEEEEecccccccc----------------ceEEEEEcCCCCEEEEEeeCC----------------
Q 048511 150 MMIWQPEKTTGIWMNVVTVGELSHSAL----------------GFYGGHWSPDGRSILAHGYGG---------------- 197 (351)
Q Consensus 150 i~iwd~~~~~~~~~~~~~~~~~~~~~~----------------~i~~i~~~~~~~~l~~~~~dg---------------- 197 (351)
|++||+.. +....... .+.. .+..++|+|||++|++++.|+
T Consensus 174 i~~~d~~~--g~~~~~~~-----~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~ 246 (741)
T 2ecf_A 174 LWVIDLAS--GRQMQLTA-----DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRT 246 (741)
T ss_dssp EEEEETTT--TEEEECCC-----CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCE
T ss_pred EEEEecCC--CCEEEecc-----CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcc
Confidence 99999987 54332221 1111 146799999999999988775
Q ss_pred -----------------eEEEEEccc-CcccCcccccccccccccEEEEEeecCCCEEEEEeC-----CCcEEEEcCCCc
Q 048511 198 -----------------AFHLWRNVG-VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-----DQTTRVFAPWKN 254 (351)
Q Consensus 198 -----------------~i~~~d~~~-~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-----dg~i~vwd~~~~ 254 (351)
.|++||+.+ ++. ..+.....|...+..++| |||++|++++. +..|++||+.++
T Consensus 247 ~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g 322 (741)
T 2ecf_A 247 DVIEQRYPAAGDANVQVKLGVISPAEQAQT---QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN 322 (741)
T ss_dssp EEEEEECCBTTSCCCEEEEEEECSSTTCCC---EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC
T ss_pred cceEeecCCCCCCCCeeEEEEEECCCCCce---EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC
Confidence 888999887 642 111111247778999999 99999987654 578999999887
Q ss_pred cccccCccceEEecccccccc----ceeEEEEeeeCCCcEEEEecCCCeEEEEecC--chhhhcee
Q 048511 255 VASLMGENSWHEVARPQVHGH----DINCVTIIQGKGNHRFVSGADEKVARVFEAP--LSFLKTLN 314 (351)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~--~~~~~~~~ 314 (351)
+. ......+.. .+..++|+| |++++++++.||.++||.++ +. ...+.
T Consensus 323 ~~----------~~~~~~~~~~~~~~~~~~~~sp--dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~ 375 (741)
T 2ecf_A 323 QQ----------RVLAHETSPTWVPLHNSLRFLD--DGSILWSSERTGFQHLYRIDSKGK-AAALT 375 (741)
T ss_dssp CE----------EEEEEEECSSCCCCCSCCEECT--TSCEEEEECTTSSCEEEEECSSSC-EEESC
T ss_pred ce----------EEEEEcCCCCcCCcCCceEECC--CCeEEEEecCCCccEEEEEcCCCC-eeeee
Confidence 62 111112221 356899999 88899999999988887654 44 44443
No 144
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.85 E-value=7.5e-19 Score=151.52 Aligned_cols=246 Identities=5% Similarity=-0.030 Sum_probs=173.0
Q ss_pred CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEE-EEeeCCCcEEEEecCCCcccceeeccccc--
Q 048511 5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILL-VSSSQDKVIRIWKLALRGSSANTQSTYRK-- 81 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l-~t~~~dg~i~iwd~~~~~~~~~~~~~~~~-- 81 (351)
++.|.+||..+ ++. +..+.. ...+..++|+ ++++++ ++...++.|.+||..+++...........
T Consensus 68 ~~~v~~~d~~~-~~~--~~~~~~-~~~~~~~~~s--------~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 135 (353)
T 3vgz_A 68 GGVVYRLDPVT-LEV--TQAIHN-DLKPFGATIN--------NTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRT 135 (353)
T ss_dssp SEEEEEECTTT-CCE--EEEEEE-SSCCCSEEEE--------TTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCC
T ss_pred CccEEEEcCCC-CeE--EEEEec-CCCcceEEEC--------CCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccc
Confidence 78999999998 643 334443 3457889999 778755 45566899999999988766555432211
Q ss_pred ------ceeeeEeeecCCeEEecC--CceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEee
Q 048511 82 ------EVISLASYIEGPVLVAGS--SSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS 145 (351)
Q Consensus 82 ------~~~~~~~~~~~~~l~~~~--~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~ 145 (351)
....++++++++.++++. .+..+..+. .+..+...+.+++|+ ++++. +++++
T Consensus 136 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s------~dg~~------l~~~~ 203 (353)
T 3vgz_A 136 EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALD------SEGKR------LYTTN 203 (353)
T ss_dssp SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEE------TTTTE------EEEEC
T ss_pred cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEEC------CCCCE------EEEEc
Confidence 257899999999777754 345554433 233344557788999 78888 89999
Q ss_pred cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-CeEEEEEcccCcccCccccccccccccc
Q 048511 146 MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-GAFHLWRNVGVDIDNWQPQKVPSGHFAA 224 (351)
Q Consensus 146 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g~i~~~d~~~~~~~~~~~~~~~~~~~~~ 224 (351)
.++.|.+||+.+ ++....+.... ..+...+..++|+|+++++++++.+ +.|.+||+.+++ .+..+....
T Consensus 204 ~~~~i~~~d~~~--~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~-----~~~~~~~~~-- 273 (353)
T 3vgz_A 204 ADGELITIDTAD--NKILSRKKLLD-DGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN-----ILAKVAAPE-- 273 (353)
T ss_dssp TTSEEEEEETTT--TEEEEEEECCC-SSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC-----EEEEEECSS--
T ss_pred CCCeEEEEECCC--CeEEEEEEcCC-CCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc-----EEEEEEcCC--
Confidence 999999999998 76666655321 1234567889999999988777654 999999998763 333433322
Q ss_pred EEEEEeecCCCEEEEEe-CCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC
Q 048511 225 VMDISWSRSSDYLLSVS-HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE 297 (351)
Q Consensus 225 v~~v~~sp~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d 297 (351)
...++|+|+++++++++ .++.|.+||..+++ .+..+.. ...+.+++|+| ++++|+.+..+
T Consensus 274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~----------~~~~~~~-~~~~~~~~~s~--dg~~l~v~~~~ 334 (353)
T 3vgz_A 274 SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK----------VVKTFDT-PTHPNSLALSA--DGKTLYVSVKQ 334 (353)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEEEETTTTE----------EEEEEEC-CSEEEEEEECT--TSCEEEEEEEC
T ss_pred CceEEECCCCCEEEEEECCCCeEEEEECCCCe----------EEEEEec-CCCCCeEEEcC--CCCEEEEEEcc
Confidence 25699999999665554 68999999998776 2222222 23578999999 88866655544
No 145
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.85 E-value=9.7e-19 Score=150.06 Aligned_cols=243 Identities=12% Similarity=0.091 Sum_probs=160.8
Q ss_pred CceEEEEEcc--CCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC-CCcEEEEecCCCc---ccceeecc
Q 048511 5 DNKIHLYRGQ--RTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ-DKVIRIWKLALRG---SSANTQST 78 (351)
Q Consensus 5 dg~i~vw~~~--~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~---~~~~~~~~ 78 (351)
++.|++|++. + +++..+..+..+. .+..++|+ +++++|++++. ++.|.+||+..+. ..... .
T Consensus 59 ~~~v~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~s--------~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~ 126 (343)
T 1ri6_A 59 EFRVLAYRIAPDD-GALTFAAESALPG-SLTHISTD--------HQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV--E 126 (343)
T ss_dssp TTEEEEEEECTTT-CCEEEEEEEECSS-CCSEEEEC--------TTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE--C
T ss_pred CCeEEEEEecCCC-CceeeccccccCC-CCcEEEEc--------CCCCEEEEEecCCCeEEEEECCCCccccccccc--c
Confidence 4899999998 5 6666666666544 88999999 88988876664 8899999995222 22221 2
Q ss_pred cccceeeeEeeecCCeEEecC-CceeEEEEEecc-------------c-cccceEEEEecCCCCCCCCCcccCCCceeE-
Q 048511 79 YRKEVISLASYIEGPVLVAGS-SSYQVSVESLLI-------------G-HEDWVYSVQWEPPSTAPSDGVSCQQPSSIL- 142 (351)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~-------------~-h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~- 142 (351)
....+..++++++++.++++. .+..+.++..-. . ....+..++|+ ++++. ++
T Consensus 127 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------pdg~~------l~~ 194 (343)
T 1ri6_A 127 GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFH------PNEQY------AYC 194 (343)
T ss_dssp CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEEC------TTSSE------EEE
T ss_pred CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEEC------CCCCE------EEE
Confidence 234577899999999777765 556665544321 1 22367789999 67875 54
Q ss_pred EeecCCeEEEEeccCCCcceEEEEEecccc---ccccceEEEEEcCCCCEEEEEe-eCCeEEEEEccc--CcccCccccc
Q 048511 143 SASMDKTMMIWQPEKTTGIWMNVVTVGELS---HSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNVG--VDIDNWQPQK 216 (351)
Q Consensus 143 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~--~~~~~~~~~~ 216 (351)
++..++.|.+||+....+............ .....+..++|+|++++|+++. .++.|.+||+.. +. .+.+.
T Consensus 195 ~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~---~~~~~ 271 (343)
T 1ri6_A 195 VNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV---LSKEG 271 (343)
T ss_dssp EETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC---EEEEE
T ss_pred EeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCc---eEEee
Confidence 445899999999964324332211111111 1134577899999999887555 789999999973 22 13333
Q ss_pred ccccccccEEEEEeecCCCEEEEEe-CCCcEEEEcCC--CccccccCccceEEeccccccccceeEEEEee
Q 048511 217 VPSGHFAAVMDISWSRSSDYLLSVS-HDQTTRVFAPW--KNVASLMGENSWHEVARPQVHGHDINCVTIIQ 284 (351)
Q Consensus 217 ~~~~~~~~v~~v~~sp~~~~l~s~~-~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 284 (351)
.+..+.. +..++|+|++++|++++ .++.|.+|++. ++. ++.+..+.. +....+++|.+
T Consensus 272 ~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~--------~~~~~~~~~-g~~p~~i~~~~ 332 (343)
T 1ri6_A 272 FQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL--------LHEKGRYAV-GQGPMWVVVNA 332 (343)
T ss_dssp EEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE--------EEEEEEEEC-SSSCCEEEEEE
T ss_pred eecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCce--------eeEcccccc-CCCCeeEEEEc
Confidence 4443433 88999999999888777 58999999654 433 223333322 24467888887
No 146
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.84 E-value=1.6e-18 Score=149.39 Aligned_cols=239 Identities=8% Similarity=0.028 Sum_probs=169.8
Q ss_pred cCCceeEEEeeCCcccCCCCCccEEEEeeC-------CCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEe-cC
Q 048511 28 HTDWIRSLDFSLPVCTSGEAISILLVSSSQ-------DKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVA-GS 99 (351)
Q Consensus 28 h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 99 (351)
....+..++|+ ++++++++++. ++.|.+||..+++....... ......++++++|+.+++ ..
T Consensus 39 ~~~~~~~~~~s--------~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~ 108 (353)
T 3vgz_A 39 VGKGAYEMAYS--------QQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN--DLKPFGATINNTTQTLWFGNT 108 (353)
T ss_dssp EESSEEEEEEE--------TTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE--SSCCCSEEEETTTTEEEEEET
T ss_pred hccCccceEEC--------CCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec--CCCcceEEECCCCCEEEEEec
Confidence 34578899999 88888887774 56899999998876655543 235678899999995554 44
Q ss_pred CceeEEEEEe--------cccccc---------ceEEEEecCCCCCCCCCcccCCCceeEEee--cCCeEEEEeccCCCc
Q 048511 100 SSYQVSVESL--------LIGHED---------WVYSVQWEPPSTAPSDGVSCQQPSSILSAS--MDKTMMIWQPEKTTG 160 (351)
Q Consensus 100 ~~~~~~~~~~--------~~~h~~---------~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~ 160 (351)
.+..+.++.. +..+.. .+.++.|+ ++++. +++++ .++.|.+||+.+ +
T Consensus 109 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s------~dg~~------l~~~~~~~~~~i~~~d~~~--~ 174 (353)
T 3vgz_A 109 VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVAD------DATNT------VYISGIGKESVIWVVDGGN--I 174 (353)
T ss_dssp TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEE------TTTTE------EEEEEESSSCEEEEEETTT--T
T ss_pred CCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEEC------CCCCE------EEEEecCCCceEEEEcCCC--C
Confidence 4555554432 222221 26889999 67776 66665 488999999988 6
Q ss_pred ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc----cccccEEEEEeecCCCE
Q 048511 161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS----GHFAAVMDISWSRSSDY 236 (351)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~----~~~~~v~~v~~sp~~~~ 236 (351)
+....+. .+...+.+++|+|+++++++++.++.|.+||+.+++ ....+. ++...+..++|+|++++
T Consensus 175 ~~~~~~~-----~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~dg~~ 244 (353)
T 3vgz_A 175 KLKTAIQ-----NTGKMSTGLALDSEGKRLYTTNADGELITIDTADNK-----ILSRKKLLDDGKEHFFINISLDTARQR 244 (353)
T ss_dssp EEEEEEC-----CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE-----EEEEEECCCSSSCCCEEEEEEETTTTE
T ss_pred ceEEEec-----CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCe-----EEEEEEcCCCCCCcccceEEECCCCCE
Confidence 6655543 233447789999999999999999999999998864 233332 24556888999999998
Q ss_pred EEEEeC-CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcE-EEEecCCCeEEEEecC-chhhhce
Q 048511 237 LLSVSH-DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHR-FVSGADEKVARVFEAP-LSFLKTL 313 (351)
Q Consensus 237 l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-l~s~~~dg~v~vw~~~-~~~~~~~ 313 (351)
+++++. ++.|.+||..+++ .+....... ...++|+| ++++ +++...++.|.+||.. ++.+..+
T Consensus 245 l~~~~~~~~~v~~~d~~~~~----------~~~~~~~~~--~~~~~~s~--dg~~l~v~~~~~~~v~~~d~~~~~~~~~~ 310 (353)
T 3vgz_A 245 AFITDSKAAEVLVVDTRNGN----------ILAKVAAPE--SLAVLFNP--ARNEAYVTHRQAGKVSVIDAKSYKVVKTF 310 (353)
T ss_dssp EEEEESSSSEEEEEETTTCC----------EEEEEECSS--CCCEEEET--TTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCc----------EEEEEEcCC--CceEEECC--CCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence 766655 5999999998876 222221221 25789999 7774 5566689999999986 6555554
Q ss_pred e
Q 048511 314 N 314 (351)
Q Consensus 314 ~ 314 (351)
.
T Consensus 311 ~ 311 (353)
T 3vgz_A 311 D 311 (353)
T ss_dssp E
T ss_pred e
Confidence 3
No 147
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.84 E-value=2.8e-18 Score=148.91 Aligned_cols=270 Identities=9% Similarity=-0.040 Sum_probs=171.6
Q ss_pred ceEEEEEcc--CCCceEEEEeee-ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecC-CCcccceeeccccc
Q 048511 6 NKIHLYRGQ--RTGKFVRACELK-GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLA-LRGSSANTQSTYRK 81 (351)
Q Consensus 6 g~i~vw~~~--~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~-~~~~~~~~~~~~~~ 81 (351)
+.|.+|+++ + +++..+.... ++...+..++|+ +++++|++++.+ .|.+|++. +++...........
T Consensus 14 ~~i~~~~~d~~~-g~l~~~~~~~~~~~~~~~~~a~s--------pdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g 83 (365)
T 1jof_A 14 GAIFTVQFDDEK-LTCKLIKRTEIPQDEPISWMTFD--------HERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGG 83 (365)
T ss_dssp CEEEEEEEETTT-TEEEEEEEEECCTTCCCSEEEEC--------TTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCS
T ss_pred CcEEEEEEECCC-CCEEEeeEEccCCCCCCcEEEEC--------CCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCC
Confidence 578887764 4 6555444332 334578899999 889999999888 99999997 55443222211112
Q ss_pred ceeeeEeeecCCe--EEecC-------------CceeEEEEEec---------c----ccccceEEEEecCCCCCCCCCc
Q 048511 82 EVISLASYIEGPV--LVAGS-------------SSYQVSVESLL---------I----GHEDWVYSVQWEPPSTAPSDGV 133 (351)
Q Consensus 82 ~~~~~~~~~~~~~--l~~~~-------------~~~~~~~~~~~---------~----~h~~~v~~l~~~p~~~~~~~~~ 133 (351)
....++++|+|+. ++++. .++.+.++..- . .+...+.+++|+ ++++
T Consensus 84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s------pdG~ 157 (365)
T 1jof_A 84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD------PTET 157 (365)
T ss_dssp SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC------TTSS
T ss_pred CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEEC------CCCC
Confidence 3556889999984 44443 34445444321 1 134568899999 7888
Q ss_pred ccCCCceeEEee-cCCeEEEEecc-CCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee-CCeEEEEEccc--Cc
Q 048511 134 SCQQPSSILSAS-MDKTMMIWQPE-KTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY-GGAFHLWRNVG--VD 208 (351)
Q Consensus 134 ~~~~~~~l~s~~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~~~d~~~--~~ 208 (351)
+ |+++. .++.|++||+. + ++......+ ....+...+..++|+|+|+++++++. ++.|.+|++.. ++
T Consensus 158 ~------l~~~~~~~~~v~~~~~~~~--g~~~~~~~~-~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~ 228 (365)
T 1jof_A 158 Y------LYSADLTANKLWTHRKLAS--GEVELVGSV-DAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHM 228 (365)
T ss_dssp E------EEEEETTTTEEEEEEECTT--SCEEEEEEE-ECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred E------EEEEcCCCCEEEEEEECCC--CCEEEeeeE-ecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCc
Confidence 7 77665 46899999998 5 443221111 11112456899999999999988775 68999998753 32
Q ss_pred ccC-cccccccc----cccc------cEEEEE-eecCCCEEEEEeCC-C-----cEEEEcCC-CccccccCccceEEec-
Q 048511 209 IDN-WQPQKVPS----GHFA------AVMDIS-WSRSSDYLLSVSHD-Q-----TTRVFAPW-KNVASLMGENSWHEVA- 268 (351)
Q Consensus 209 ~~~-~~~~~~~~----~~~~------~v~~v~-~sp~~~~l~s~~~d-g-----~i~vwd~~-~~~~~~~~~~~~~~~~- 268 (351)
... ...+..+. +|.. .+..++ |+|+|++|+++..+ . .|.+|++. +++ ...+.
T Consensus 229 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~--------~~~~~~ 300 (365)
T 1jof_A 229 PVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS--------IEKQLF 300 (365)
T ss_dssp EEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC--------EEEEEE
T ss_pred EEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCC--------EEEeee
Confidence 100 00111221 2232 588999 99999998776543 2 89999986 333 11111
Q ss_pred cccccccceeEEEEeeeC--CCcEEEEecC-CCeEEEEecCchh
Q 048511 269 RPQVHGHDINCVTIIQGK--GNHRFVSGAD-EKVARVFEAPLSF 309 (351)
Q Consensus 269 ~~~~~~~~i~~~~~~~~~--~~~~l~s~~~-dg~v~vw~~~~~~ 309 (351)
....+...+..++|+| . ++++|++++. ++.|++|+++...
T Consensus 301 ~~~~~~~~~~~~a~sp-~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 301 LSPTPTSGGHSNAVSP-CPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp EEECSSCCTTCCCEEE-CTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred eeecCCCCcccceecC-CCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 1222344567889998 2 3788887775 5899999987553
No 148
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=5.6e-18 Score=145.91 Aligned_cols=230 Identities=11% Similarity=0.054 Sum_probs=155.8
Q ss_pred CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEee-CCCcEEEEecCCCcccceeecc----
Q 048511 4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSS-QDKVIRIWKLALRGSSANTQST---- 78 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~-~dg~i~iwd~~~~~~~~~~~~~---- 78 (351)
.++.|++|++.. ++...+..+..|...+..++|+ +++++|++++ .++.|.+|++............
T Consensus 61 ~~~~v~~~~~~~-g~~~~~~~~~~~~~~p~~~a~s--------pdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~ 131 (347)
T 3hfq_A 61 DEGGIAAWQIDG-QTAHKLNTVVAPGTPPAYVAVD--------EARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSG 131 (347)
T ss_dssp TEEEEEEEEEET-TEEEEEEEEEEESCCCSEEEEE--------TTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCC
T ss_pred CCceEEEEEecC-CcEEEeeeeecCCCCCEEEEEC--------CCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCC
Confidence 368999999987 7766777777788899999999 8899888887 7899999999643222211111
Q ss_pred -------cccceeeeEeeecCCeEEecCCceeEEEEEec-----------ccc-ccceEEEEecCCCCCCCCCcccCCCc
Q 048511 79 -------YRKEVISLASYIEGPVLVAGSSSYQVSVESLL-----------IGH-EDWVYSVQWEPPSTAPSDGVSCQQPS 139 (351)
Q Consensus 79 -------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------~~h-~~~v~~l~~~p~~~~~~~~~~~~~~~ 139 (351)
....+..++++|+|+++++...+..+.++..- ..+ ...+..++|+ +++++
T Consensus 132 ~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~s------pdg~~----- 200 (347)
T 3hfq_A 132 HGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFS------PDGQY----- 200 (347)
T ss_dssp CCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEEC------TTSSE-----
T ss_pred CCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEEC------CCCCE-----
Confidence 01235679999999966655555555554432 111 2256778999 78885
Q ss_pred eeEEeecCCeEEEEeccCCCcceEEEEEeccccc---cccceEEEEEcCCCCEEEEE-eeCCeEEEEEcccCcccCcccc
Q 048511 140 SILSASMDKTMMIWQPEKTTGIWMNVVTVGELSH---SALGFYGGHWSPDGRSILAH-GYGGAFHLWRNVGVDIDNWQPQ 215 (351)
Q Consensus 140 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~ 215 (351)
++++...++.|.+|++....+............. ....+..++|+|+|++|+++ ..++.|.+|++.... ....+
T Consensus 201 l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g--~~~~~ 278 (347)
T 3hfq_A 201 AFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG--HLTLI 278 (347)
T ss_dssp EEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG--CEEEE
T ss_pred EEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC--cEEEe
Confidence 0444567899999999853344322222111111 11358899999999988554 458999999996321 12344
Q ss_pred cccccccccEEEEEeecCCCEEEEEeC-CCcEEEEc--CCCcc
Q 048511 216 KVPSGHFAAVMDISWSRSSDYLLSVSH-DQTTRVFA--PWKNV 255 (351)
Q Consensus 216 ~~~~~~~~~v~~v~~sp~~~~l~s~~~-dg~i~vwd--~~~~~ 255 (351)
..+..+...+..++|+|+|++|++++. ++.|.+|+ ..+++
T Consensus 279 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 279 QQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGK 321 (347)
T ss_dssp EEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred EEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence 555555667889999999998888775 48999994 44454
No 149
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.83 E-value=4.3e-19 Score=152.74 Aligned_cols=233 Identities=11% Similarity=-0.002 Sum_probs=155.4
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecC-CceeEEEeeCCcccCCCCCccEE-EEeeCCCcEEEEecCCCcccceeeccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHT-DWIRSLDFSLPVCTSGEAISILL-VSSSQDKVIRIWKLALRGSSANTQSTY 79 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~~~~~~~~l-~t~~~dg~i~iwd~~~~~~~~~~~~~~ 79 (351)
++.+++|++||..+ ++ .+..+..+. ..+..++|+ ++++++ +++..++.|.+||+.+++.........
T Consensus 17 ~~~~~~v~~~d~~~-~~--~~~~~~~~~~~~~~~~~~s--------~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~ 85 (349)
T 1jmx_B 17 TNYPNNLHVVDVAS-DT--VYKSCVMPDKFGPGTAMMA--------PDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS 85 (349)
T ss_dssp EETTTEEEEEETTT-TE--EEEEEECSSCCSSCEEEEC--------TTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred eCCCCeEEEEECCC-Cc--EEEEEecCCCCCCceeEEC--------CCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccc
Confidence 46789999999998 64 344554332 257899999 788765 455678999999998765443222100
Q ss_pred ccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC------------
Q 048511 80 RKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD------------ 147 (351)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d------------ 147 (351)
. ...+...+..++|+ ++++. |++++.+
T Consensus 86 ~-----------------------------~~~~~~~~~~~~~s------pdg~~------l~~~~~~~~~~~~~~~~~~ 124 (349)
T 1jmx_B 86 V-----------------------------PGEVGRSMYSFAIS------PDGKE------VYATVNPTQRLNDHYVVKP 124 (349)
T ss_dssp S-----------------------------TTEEEECSSCEEEC------TTSSE------EEEEEEEEEECSSCEEECC
T ss_pred c-----------------------------cccccccccceEEC------CCCCE------EEEEcccccccccccccCC
Confidence 0 00002236678899 78888 8888765
Q ss_pred CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc-------
Q 048511 148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG------- 220 (351)
Q Consensus 148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~------- 220 (351)
+.|.+||+.+ +.....+... .+...+.+++|+|+++ +++++ +.|.+||+.+++.. ..+..
T Consensus 125 ~~i~~~d~~~--~~~~~~~~~~---~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~-----~~~~~~~~~~~~ 191 (349)
T 1jmx_B 125 PRLEVFSTAD--GLEAKPVRTF---PMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYT-----VALPLRNWNRKG 191 (349)
T ss_dssp CEEEEEEGGG--GGGBCCSEEE---ECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEE-----EEECSTTCCCTT
T ss_pred CeEEEEECCC--ccccceeeec---cCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCcee-----ccccccccCCcc
Confidence 8999999987 3322221111 1223578899999999 66553 44999999776421 11110
Q ss_pred -------------------------------------------------------------ccccEEEEEeec-CCCEEE
Q 048511 221 -------------------------------------------------------------HFAAVMDISWSR-SSDYLL 238 (351)
Q Consensus 221 -------------------------------------------------------------~~~~v~~v~~sp-~~~~l~ 238 (351)
+...+..++|+| ++++++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~ 271 (349)
T 1jmx_B 192 YSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY 271 (349)
T ss_dssp BCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEE
T ss_pred ccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEE
Confidence 112456778889 999988
Q ss_pred EEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhcee
Q 048511 239 SVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLN 314 (351)
Q Consensus 239 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~ 314 (351)
++ ++.|.+||+.+++ .+..+. ....+.+++|++ ++++|++++.++.|++||+. ++.+..+.
T Consensus 272 ~~--~~~v~~~d~~~~~----------~~~~~~-~~~~~~~~~~s~--dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 272 GV--LNRLAKYDLKQRK----------LIKAAN-LDHTYYCVAFDK--KGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp EE--ESEEEEEETTTTE----------EEEEEE-CSSCCCEEEECS--SSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred EE--cCeEEEEECccCe----------EEEEEc-CCCCccceEECC--CCCEEEEecCCCeEEEEeccccceeeeee
Confidence 88 8899999998876 222221 223478999999 88888888889999999986 55555543
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.83 E-value=6.5e-19 Score=147.67 Aligned_cols=219 Identities=14% Similarity=0.031 Sum_probs=154.8
Q ss_pred EeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEecc---------cc-ccceEEEEec
Q 048511 54 SSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLI---------GH-EDWVYSVQWE 123 (351)
Q Consensus 54 t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------~h-~~~v~~l~~~ 123 (351)
+++.|++|++||+.+++..... .+...+.++.|+|+++.++++. +..+.++..-. .+ ...+.+++|+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~--~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVW--QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEE--EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred CCCcceeEEEEeCCCCceeeec--cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence 3567899999999887654322 2356788999999999988875 44555544322 33 3567889999
Q ss_pred CCCCCCCCCcccCCCceeEEee--cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEE-EEeeCCeEE
Q 048511 124 PPSTAPSDGVSCQQPSSILSAS--MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSIL-AHGYGGAFH 200 (351)
Q Consensus 124 p~~~~~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~dg~i~ 200 (351)
++++. |++++ .++...||.+....+. ...+. ....+..++|+|++++|+ ++..++.+.
T Consensus 94 ------pdg~~------l~~~~~~~~~~~~l~~~~~~~~~-~~~~~------~~~~~~~~~~spdg~~l~~~~~~~~~~~ 154 (297)
T 2ojh_A 94 ------PDGAL------YAISDKVEFGKSAIYLLPSTGGT-PRLMT------KNLPSYWHGWSPDGKSFTYCGIRDQVFD 154 (297)
T ss_dssp ------TTSSE------EEEEECTTTSSCEEEEEETTCCC-CEECC------SSSSEEEEEECTTSSEEEEEEEETTEEE
T ss_pred ------CCCCE------EEEEEeCCCCcceEEEEECCCCc-eEEee------cCCCccceEECCCCCEEEEEECCCCceE
Confidence 78888 99888 4455666665432233 22221 223488899999999887 778899999
Q ss_pred EEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe-CCCcEEEEcCCCccccccCccceEEeccccccccceeE
Q 048511 201 LWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS-HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINC 279 (351)
Q Consensus 201 ~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (351)
+|+++... .....+..+...+.+++|+|++++|+.++ .++.++||++..... .+..+..|...+.+
T Consensus 155 l~~~~~~~----~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~ 221 (297)
T 2ojh_A 155 IYSMDIDS----GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS---------SVERITDSAYGDWF 221 (297)
T ss_dssp EEEEETTT----CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS---------CEEECCCCSEEEEE
T ss_pred EEEEECCC----CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCC---------CcEEEecCCcccCC
Confidence 99975432 22445566778899999999999887666 589999999863221 23334456677899
Q ss_pred EEEeeeCCCcEEEEecCC-----------CeEEEEecCchh
Q 048511 280 VTIIQGKGNHRFVSGADE-----------KVARVFEAPLSF 309 (351)
Q Consensus 280 ~~~~~~~~~~~l~s~~~d-----------g~v~vw~~~~~~ 309 (351)
++|+| ++.+|++++.+ +.|++||+.+..
T Consensus 222 ~~~s~--dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 260 (297)
T 2ojh_A 222 PHPSP--SGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN 260 (297)
T ss_dssp EEECT--TSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS
T ss_pred eEECC--CCCEEEEEEcCCCCCcccccCceEEEEEecCCCC
Confidence 99999 89999888765 579999987443
No 151
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.83 E-value=4.1e-19 Score=167.51 Aligned_cols=260 Identities=9% Similarity=-0.007 Sum_probs=170.0
Q ss_pred CCCceEEEEEccCCCceEEEEeeeecC-----------------CceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEe
Q 048511 3 GLDNKIHLYRGQRTGKFVRACELKGHT-----------------DWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWK 65 (351)
Q Consensus 3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~-----------------~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd 65 (351)
+.|+ | +||+.+ ++.. ...+..|. ..|.+++|+ ++ +.++.+. |+.|++||
T Consensus 42 ~~~~-i-~~d~~t-g~~~-~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~s--------pd-~~~~~~~-~~~i~~~d 107 (706)
T 2z3z_A 42 EGDD-L-VFNKAN-GKSA-QTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDA--------GR-GLVVLFT-QGGLVGFD 107 (706)
T ss_dssp ETTE-E-EEEC---------CEEEEHHHHHTTC-----------CCCEEEEET--------TT-TEEEEEE-TTEEEEEE
T ss_pred eCCc-E-EEECCC-CcEe-eEEeechhHhhhhccchhccccccccCceeEEEC--------CC-CeEEEEE-CCEEEEEE
Confidence 3456 8 999998 6430 02223332 569999999 77 5555443 69999999
Q ss_pred cCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEecc-----c--------cccc--------------eE
Q 048511 66 LALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLI-----G--------HEDW--------------VY 118 (351)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~--------h~~~--------------v~ 118 (351)
+.+++...... ....+..+.|+|+|+.++.. .+..+.++..-. + +... +.
T Consensus 108 ~~~~~~~~l~~--~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~ 184 (706)
T 2z3z_A 108 MLARKVTYLFD--TNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEK 184 (706)
T ss_dssp TTTTEEEEEEC--CTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCC
T ss_pred CCCCceEEccC--CcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCc
Confidence 98775433222 23457788999999988875 445555554322 1 2222 47
Q ss_pred EEEecCCCCCCCCCcccCCCceeEEee---------------------------------cCCeEEEEeccCCCcceEEE
Q 048511 119 SVQWEPPSTAPSDGVSCQQPSSILSAS---------------------------------MDKTMMIWQPEKTTGIWMNV 165 (351)
Q Consensus 119 ~l~~~p~~~~~~~~~~~~~~~~l~s~~---------------------------------~d~~i~iwd~~~~~~~~~~~ 165 (351)
++.|+ ||++. |++++ .+..|++||+.+ +.....
T Consensus 185 ~~~~S------pDg~~------la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~--~~~~~~ 250 (706)
T 2z3z_A 185 GTFWS------PKGSC------LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLAT--GKTVYL 250 (706)
T ss_dssp SEEEC------TTSSE------EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTT--TEEEEC
T ss_pred eEEEC------CCCCE------EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCC--CceEee
Confidence 89999 79998 99887 446799999987 543222
Q ss_pred EEeccccccccceEEEEEcCCCCEEEEEeeCC-----eEEEEEcccCcccCcccccccc--cccc---cEEEEEeec--C
Q 048511 166 VTVGELSHSALGFYGGHWSPDGRSILAHGYGG-----AFHLWRNVGVDIDNWQPQKVPS--GHFA---AVMDISWSR--S 233 (351)
Q Consensus 166 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~~~--~~~~---~v~~v~~sp--~ 233 (351)
. ....+...+.+++|+|+++.|++++.++ .|++||+.+++ ....+. .+.. .+..++|+| +
T Consensus 251 ~---~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~-----~~~~~~~~~~~~~~~~~~~~~~sp~~d 322 (706)
T 2z3z_A 251 Q---TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR-----FVRTLFVETDKHYVEPLHPLTFLPGSN 322 (706)
T ss_dssp C---CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC-----EEEEEEEEECSSCCCCCSCCEECTTCS
T ss_pred c---cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc-----eeeEEEEccCCCeECccCCceeecCCC
Confidence 1 1124556789999999999999988776 89999998862 111111 1222 246789999 9
Q ss_pred CCEEEEEeCCCcEEEEcCC-CccccccCccceEEeccccccccceeE-EEEeeeCCCcEEE-EecCCC----eEEEEecC
Q 048511 234 SDYLLSVSHDQTTRVFAPW-KNVASLMGENSWHEVARPQVHGHDINC-VTIIQGKGNHRFV-SGADEK----VARVFEAP 306 (351)
Q Consensus 234 ~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~l~-s~~~dg----~v~vw~~~ 306 (351)
|++|++++.|+.++||++. .+. .+..+..+...+.. ++|+| +++.|+ +++.++ .|..|++.
T Consensus 323 g~~l~~~~~~g~~~l~~~~~~~~----------~~~~l~~~~~~v~~~~~~sp--dg~~l~~~~~~~~~~~~~l~~~d~~ 390 (706)
T 2z3z_A 323 NQFIWQSRRDGWNHLYLYDTTGR----------LIRQVTKGEWEVTNFAGFDP--KGTRLYFESTEASPLERHFYCIDIK 390 (706)
T ss_dssp SEEEEEECTTSSCEEEEEETTSC----------EEEECCCSSSCEEEEEEECT--TSSEEEEEESSSCTTCBEEEEEETT
T ss_pred CEEEEEEccCCccEEEEEECCCC----------EEEecCCCCeEEEeeeEEcC--CCCEEEEEecCCCCceEEEEEEEcC
Confidence 9999999999999999876 332 23334455566766 79999 787665 444554 67777766
Q ss_pred chhhhce
Q 048511 307 LSFLKTL 313 (351)
Q Consensus 307 ~~~~~~~ 313 (351)
+...+.+
T Consensus 391 ~~~~~~l 397 (706)
T 2z3z_A 391 GGKTKDL 397 (706)
T ss_dssp CCCCEES
T ss_pred CCCceec
Confidence 4334333
No 152
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.82 E-value=1e-18 Score=171.56 Aligned_cols=256 Identities=9% Similarity=0.038 Sum_probs=182.9
Q ss_pred ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCC-cccceeeccccccee
Q 048511 6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALR-GSSANTQSTYRKEVI 84 (351)
Q Consensus 6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~ 84 (351)
...++|.....++ ...+.+|...+.++.|+ ++ .++++++.|+++++|.+... .....+... ....
T Consensus 183 ~~~~lw~~~~~~~---~~~l~~~~~~v~~~~~s--------~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~--~~~~ 248 (1045)
T 1k32_A 183 TRGKIWIEVNSGA---FKKIVDMSTHVSSPVIV--------GH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSF--TDYY 248 (1045)
T ss_dssp TCCEEEEEEETTE---EEEEECCSSCCEEEEEE--------TT-EEEEEECTTSSCEEEEEETTSCSCEECCCC--CSSC
T ss_pred CcCCEEEECCCCC---eEECcCCCCcccceEEe--------CC-EEEEEEeccCceEEEEEeCCCCcceEecCC--CCcc
Confidence 3456665443132 23458899999999999 66 67778888999999987642 222222211 2345
Q ss_pred eeEeeecCCeEEecCCceeEEEEE-------eccc-----------cccceEEEEecCCCCCCCCCcccCCCceeEEeec
Q 048511 85 SLASYIEGPVLVAGSSSYQVSVES-------LLIG-----------HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM 146 (351)
Q Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~-----------h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~ 146 (351)
...|+|+|+.++.+. ++.+.++. .+.+ |...+.+++|+| |+++. |++++
T Consensus 249 ~~~~SpDG~~la~~~-~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~-----pdG~~------la~~~- 315 (1045)
T 1k32_A 249 PRHLNTDGRRILFSK-GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSP-----LDGDL------IAFVS- 315 (1045)
T ss_dssp EEEEEESSSCEEEEE-TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEE-----CGGGC------EEEEE-
T ss_pred eeeEcCCCCEEEEEe-CCEEEEecCCceEeeeeccCcccccccccccccccceeeecC-----CCCCE------EEEEE-
Confidence 668999999887763 44443332 2222 334688999993 37777 88877
Q ss_pred CCeEEEEeccCCCcceEEEEEecccccccc-ceEEEEEcCCCCEEEEEeeCCeEE-EEEcccCcccCccccccccccccc
Q 048511 147 DKTMMIWQPEKTTGIWMNVVTVGELSHSAL-GFYGGHWSPDGRSILAHGYGGAFH-LWRNVGVDIDNWQPQKVPSGHFAA 224 (351)
Q Consensus 147 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~-~~d~~~~~~~~~~~~~~~~~~~~~ 224 (351)
++.|.+|++.. +.... + ..+.. .+..++|+ +++.|+.++.++.+. +||+.++. ...+..|...
T Consensus 316 ~~~i~~~~~~~--~~~~~-~-----~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~------~~~l~~~~~~ 380 (1045)
T 1k32_A 316 RGQAFIQDVSG--TYVLK-V-----PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK------AEKFEENLGN 380 (1045)
T ss_dssp TTEEEEECTTS--SBEEE-C-----SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC------EEECCCCCCS
T ss_pred cCEEEEEcCCC--CceEE-c-----cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC------ceEecCCccc
Confidence 88999999987 44322 2 24455 78999999 999999988888888 99988753 2333467788
Q ss_pred EEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC-------
Q 048511 225 VMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE------- 297 (351)
Q Consensus 225 v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d------- 297 (351)
+..++|+|+|++|++++.++.|++||+.+++ .......|...+.+++|+| |+++|++++.+
T Consensus 381 ~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~----------~~~~~~~~~~~v~~~~~Sp--DG~~la~~~~~~~~~~~~ 448 (1045)
T 1k32_A 381 VFAMGVDRNGKFAVVANDRFEIMTVDLETGK----------PTVIERSREAMITDFTISD--NSRFIAYGFPLKHGETDG 448 (1045)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCC----------EEEEEECSSSCCCCEEECT--TSCEEEEEEEECSSTTCS
T ss_pred eeeeEECCCCCEEEEECCCCeEEEEECCCCc----------eEEeccCCCCCccceEECC--CCCeEEEEecCccccccC
Confidence 9999999999999999999999999998876 2222335777789999999 99999888764
Q ss_pred ---CeEEEEecCchhhhceee
Q 048511 298 ---KVARVFEAPLSFLKTLNH 315 (351)
Q Consensus 298 ---g~v~vw~~~~~~~~~~~~ 315 (351)
+.|++||+.+..+..+..
T Consensus 449 ~~~~~i~l~d~~~g~~~~l~~ 469 (1045)
T 1k32_A 449 YVMQAIHVYDMEGRKIFAATT 469 (1045)
T ss_dssp CCEEEEEEEETTTTEEEECSC
T ss_pred CCCCeEEEEECCCCcEEEeeC
Confidence 499999987433444433
No 153
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.82 E-value=6e-19 Score=173.15 Aligned_cols=252 Identities=8% Similarity=-0.012 Sum_probs=182.8
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc---
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST--- 78 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~--- 78 (351)
++.|++++||.+...+. ....+..|. .+..++|+ ++|++|+++. ++.|.+|++... .+..+...
T Consensus 220 ~~~dg~~~l~~~~~~g~--~~~~l~~~~-~~~~~~~S--------pDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~~ 286 (1045)
T 1k32_A 220 TDIDGFGQIYSTDLDGK--DLRKHTSFT-DYYPRHLN--------TDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGDLE 286 (1045)
T ss_dssp ECTTSSCEEEEEETTSC--SCEECCCCC-SSCEEEEE--------ESSSCEEEEE-TTEEEEECTTTC-CEEECCCCCCC
T ss_pred EeccCceEEEEEeCCCC--cceEecCCC-CcceeeEc--------CCCCEEEEEe-CCEEEEecCCce-EeeeeccCccc
Confidence 34578888998664221 223444554 46778999 8899898874 899999998433 22222110
Q ss_pred -------cccceeeeEee-ecCCeEEecCCceeEEEE-------Eecccccc-ceEEEEecCCCCCCCCCcccCCCceeE
Q 048511 79 -------YRKEVISLASY-IEGPVLVAGSSSYQVSVE-------SLLIGHED-WVYSVQWEPPSTAPSDGVSCQQPSSIL 142 (351)
Q Consensus 79 -------~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~-------~~~~~h~~-~v~~l~~~p~~~~~~~~~~~~~~~~l~ 142 (351)
+...+..++|+ |+|+.++.+. .+.+.++ ..+..|.. .+..++|+ +++. |+
T Consensus 287 ~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-------dg~~------l~ 352 (1045)
T 1k32_A 287 SPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-------TKVA------FI 352 (1045)
T ss_dssp BCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-------SEEE------EE
T ss_pred ccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-------CCCe------EE
Confidence 12257789999 9999888765 3333322 22455666 78888887 4556 88
Q ss_pred EeecCCeEE-EEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccc
Q 048511 143 SASMDKTMM-IWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH 221 (351)
Q Consensus 143 s~~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~ 221 (351)
+++.++.+. +||+.. +... .+ ..+...+..++|+|++++|++++.++.|++||+.+++ ....+.+|
T Consensus 353 ~~s~~~~l~~~~d~~~--~~~~-~l-----~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~-----~~~~~~~~ 419 (1045)
T 1k32_A 353 HGTREGDFLGIYDYRT--GKAE-KF-----EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK-----PTVIERSR 419 (1045)
T ss_dssp EEETTEEEEEEEETTT--CCEE-EC-----CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----EEEEEECS
T ss_pred EEECCCceEEEEECCC--CCce-Ee-----cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc-----eEEeccCC
Confidence 888888888 889876 4322 11 1456779999999999999999999999999998873 34445578
Q ss_pred cccEEEEEeecCCCEEEEEeCCC----------cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEE
Q 048511 222 FAAVMDISWSRSSDYLLSVSHDQ----------TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRF 291 (351)
Q Consensus 222 ~~~v~~v~~sp~~~~l~s~~~dg----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 291 (351)
...+..++|+|||++|++++.++ .|++||+.+++ ...+..|...+..++|+| ++++|
T Consensus 420 ~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-----------~~~l~~~~~~~~~~~~sp--dG~~l 486 (1045)
T 1k32_A 420 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-----------IFAATTENSHDYAPAFDA--DSKNL 486 (1045)
T ss_dssp SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-----------EEECSCSSSBEEEEEECT--TSCEE
T ss_pred CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-----------EEEeeCCCcccCCceEcC--CCCEE
Confidence 88899999999999998887644 89999997764 223345666788899999 99999
Q ss_pred EEecCCCeEEEEecC
Q 048511 292 VSGADEKVARVFEAP 306 (351)
Q Consensus 292 ~s~~~dg~v~vw~~~ 306 (351)
+.++.++..++|+..
T Consensus 487 ~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 487 YYLSYRSLDPSPDRV 501 (1045)
T ss_dssp EEEESCCCCCEECSS
T ss_pred EEEecccCCcCcchh
Confidence 999998888888754
No 154
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.81 E-value=4.2e-18 Score=145.58 Aligned_cols=227 Identities=7% Similarity=-0.014 Sum_probs=153.7
Q ss_pred CccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC-CceeEEEEEe---------ccccccce
Q 048511 48 ISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS-SSYQVSVESL---------LIGHEDWV 117 (351)
Q Consensus 48 ~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~---------~~~h~~~v 117 (351)
.+..+++++.++.|.+||+.+++........ .... .++++++++.++++. .+..+..+.. +..+..+.
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 86 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQITLG-YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSM 86 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEEEECC-CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCC
T ss_pred CCEEEEEecCCCeEEEEeCcccceeeeEEcc-CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCc
Confidence 4556888889999999999988776555433 3344 899999999666544 3555544432 23334444
Q ss_pred EEEEecCCCCCCCCCcccCCCceeEEeecCC---eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe
Q 048511 118 YSVQWEPPSTAPSDGVSCQQPSSILSASMDK---TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG 194 (351)
Q Consensus 118 ~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 194 (351)
.+++|+ +++++ ++++..++ .|.+||+.. ++.+..+. ......+++|+|+++++++++
T Consensus 87 ~~~~~s------~dg~~------l~~~~~~~~~~~i~v~d~~~--~~~~~~~~------~~~~~~~~~~spdg~~l~~~~ 146 (331)
T 3u4y_A 87 ADVDIT------PDDQF------AVTVTGLNHPFNMQSYSFLK--NKFISTIP------IPYDAVGIAISPNGNGLILID 146 (331)
T ss_dssp CCEEEC------TTSSE------EEECCCSSSSCEEEEEETTT--TEEEEEEE------CCTTEEEEEECTTSSCEEEEE
T ss_pred cceEEC------CCCCE------EEEecCCCCcccEEEEECCC--CCeEEEEE------CCCCccceEECCCCCEEEEEe
Confidence 448999 78888 88655553 899999988 66666554 223468999999998766665
Q ss_pred e-CCe-EEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEE-EeCCCcEEEEcCCCccccccCccceEEecccc
Q 048511 195 Y-GGA-FHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLS-VSHDQTTRVFAPWKNVASLMGENSWHEVARPQ 271 (351)
Q Consensus 195 ~-dg~-i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 271 (351)
. ++. |.+|++.............+ .....+..++|+|+|++++. +..++.|++||+.+++. ...+..+.
T Consensus 147 ~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~-------~~~~~~~~ 218 (331)
T 3u4y_A 147 RSSANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN-------ITLLNAVG 218 (331)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS-------CEEEEEEE
T ss_pred cCCCceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc-------cceeeecc
Confidence 4 477 99999875321000001111 23455789999999996654 45689999999987762 01122222
Q ss_pred ccccceeEEEEeeeCCCcEEE-EecCCCeEEEEecCc
Q 048511 272 VHGHDINCVTIIQGKGNHRFV-SGADEKVARVFEAPL 307 (351)
Q Consensus 272 ~~~~~i~~~~~~~~~~~~~l~-s~~~dg~v~vw~~~~ 307 (351)
....+..++|+| ++++++ +...++.|.+||+..
T Consensus 219 -~~~~~~~~~~sp--dg~~l~v~~~~~~~i~~~d~~~ 252 (331)
T 3u4y_A 219 -TNNLPGTIVVSR--DGSTVYVLTESTVDVFNFNQLS 252 (331)
T ss_dssp -CSSCCCCEEECT--TSSEEEEECSSEEEEEEEETTT
T ss_pred -CCCCCceEEECC--CCCEEEEEEcCCCEEEEEECCC
Confidence 235578999999 888665 455688999999873
No 155
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.81 E-value=6.6e-19 Score=166.56 Aligned_cols=239 Identities=10% Similarity=0.086 Sum_probs=159.8
Q ss_pred ceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc--cceeeeEeeecCCeEEecCCc-------
Q 048511 31 WIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR--KEVISLASYIEGPVLVAGSSS------- 101 (351)
Q Consensus 31 ~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~------- 101 (351)
.+.+++|+ ++|+++++ +.||+|++||+.+++.......... ..+..++|+|+|+.++.+..+
T Consensus 18 ~~~~~~~s--------pdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~ 88 (723)
T 1xfd_A 18 HDPEAKWI--------SDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHS 88 (723)
T ss_dssp CCCCCCBS--------SSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSC
T ss_pred cccccEEc--------CCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeec
Confidence 46788999 88887776 7899999999998876544332211 137899999999998886543
Q ss_pred --eeEEEEEe-------c---cccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEec
Q 048511 102 --YQVSVESL-------L---IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVG 169 (351)
Q Consensus 102 --~~~~~~~~-------~---~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 169 (351)
..+.++.. + .+|...+..++|+ |||+. |+.++. +.|++||+.. +.........
T Consensus 89 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~S------PdG~~------la~~~~-~~i~~~~~~~--g~~~~~~~~~ 153 (723)
T 1xfd_A 89 YTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWG------PKGQQ------LIFIFE-NNIYYCAHVG--KQAIRVVSTG 153 (723)
T ss_dssp CCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBC------SSTTC------EEEEET-TEEEEESSSS--SCCEEEECCC
T ss_pred ceeeEEEEECCCCceEeccCCccccccccccEEC------CCCCE------EEEEEC-CeEEEEECCC--CceEEEecCC
Confidence 34444432 1 2344457889999 79988 998876 7999999987 5443332210
Q ss_pred ccc----cc---------ccceEEEEEcCCCCEEEEEeeCC----------------------------------eEEEE
Q 048511 170 ELS----HS---------ALGFYGGHWSPDGRSILAHGYGG----------------------------------AFHLW 202 (351)
Q Consensus 170 ~~~----~~---------~~~i~~i~~~~~~~~l~~~~~dg----------------------------------~i~~~ 202 (351)
... ++ ...+.+++|+|||+.|++++.++ .|++|
T Consensus 154 ~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~ 233 (723)
T 1xfd_A 154 KEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVI 233 (723)
T ss_dssp BTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEE
T ss_pred CCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEE
Confidence 000 00 01237899999999999987653 79999
Q ss_pred EcccCcccCccccccccc------ccccEEEEEeecCCCEEEEEeC----CCcEEEEcCCCccccccCccceEEeccccc
Q 048511 203 RNVGVDIDNWQPQKVPSG------HFAAVMDISWSRSSDYLLSVSH----DQTTRVFAPWKNVASLMGENSWHEVARPQV 272 (351)
Q Consensus 203 d~~~~~~~~~~~~~~~~~------~~~~v~~v~~sp~~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 272 (351)
|+.+++ ....+.. +...+..++|+|||++|++.+. +..|++||+.+++.. .... ..
T Consensus 234 d~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~-------~~~~--~~ 299 (723)
T 1xfd_A 234 GLNGPT-----HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT-------KKHE--DE 299 (723)
T ss_dssp ESSSSC-----CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE-------EEEE--EE
T ss_pred ECCCCc-----eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce-------EEEE--ec
Confidence 998764 2233333 3667999999999998876643 367999999877621 1111 11
Q ss_pred cccce----eEEEEeeeCCCcEEEE--ecCCC------eEEEEe-cCchh
Q 048511 273 HGHDI----NCVTIIQGKGNHRFVS--GADEK------VARVFE-APLSF 309 (351)
Q Consensus 273 ~~~~i----~~~~~~~~~~~~~l~s--~~~dg------~v~vw~-~~~~~ 309 (351)
+...+ ..++|+| |++.|+. +..++ .|.+|| ..+..
T Consensus 300 ~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~ 347 (723)
T 1xfd_A 300 SEAWLHRQNEEPVFSK--DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS 347 (723)
T ss_dssp CSSCCCCCCCCCEECT--TSCSEEEEEEECCSSSSCEEEEEEECSSCCSS
T ss_pred cCCEEeccCCCceEcC--CCCeEEEEEecccCCCcceeEEEEEeccCCCC
Confidence 22222 3789999 8886664 45677 577788 44433
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=4.7e-18 Score=156.76 Aligned_cols=242 Identities=9% Similarity=0.039 Sum_probs=166.7
Q ss_pred CCceEEEEEccCCCceEEEEeeeecC-CceeEEEeeCCcccCCCCCccEEEEeeC---CCcEEEEecCC--Ccccceeec
Q 048511 4 LDNKIHLYRGQRTGKFVRACELKGHT-DWIRSLDFSLPVCTSGEAISILLVSSSQ---DKVIRIWKLAL--RGSSANTQS 77 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~~~~~~~~l~t~~~---dg~i~iwd~~~--~~~~~~~~~ 77 (351)
.||+++||+++. ++. ..+..|. ..|..+.|+ |+ +++++++. +...++|.+.. .........
T Consensus 42 ~~g~~~lw~~~~-g~~---~~lt~~~~~~~~~~~~s--------pd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~ 108 (582)
T 3o4h_A 42 SEGSVNAYLYDG-GET---VKLNREPINSVLDPHYG--------VG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEA 108 (582)
T ss_dssp ETTEEEEEEEET-TEE---EECCSSCCSEECEECTT--------CS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTT
T ss_pred cCCceeEEEEcC-CCc---EeeecccccccccccCC--------CC-eEEEEeccCCCCcceEEEEEeccCCCccccccC
Confidence 389999999976 633 3444454 689999999 77 78887775 55667776654 222222211
Q ss_pred ccccceeeeEeeecCCe--EEecCCceeEEEEEe-------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC-
Q 048511 78 TYRKEVISLASYIEGPV--LVAGSSSYQVSVESL-------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD- 147 (351)
Q Consensus 78 ~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~-------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d- 147 (351)
.......+++++|+. ++.+..+... ++.. +..+.. .+++|+ |||+. |++++.+
T Consensus 109 --~~~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~--~~~~~s------pDG~~------la~~~~~~ 171 (582)
T 3o4h_A 109 --VKPMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG--FGFVSD------IRGDL------IAGLGFFG 171 (582)
T ss_dssp --SCSBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS--CEEEEE------EETTE------EEEEEEEE
T ss_pred --CCCceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC--ceEEEC------CCCCE------EEEEEEcC
Confidence 123335688888864 3333333222 3322 111222 688999 79999 9988877
Q ss_pred ---CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCC--eEEEEEcccCcccCccccccccccc
Q 048511 148 ---KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGG--AFHLWRNVGVDIDNWQPQKVPSGHF 222 (351)
Q Consensus 148 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~ 222 (351)
+.|++||+.+ +... .+. .+...+..++|+|||+.|+++..++ .|++||+.+++ .. .+..|.
T Consensus 172 ~~~~~i~~~d~~~--g~~~-~l~-----~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~-----~~-~~~~~~ 237 (582)
T 3o4h_A 172 GGRVSLFTSNLSS--GGLR-VFD-----SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS-----VE-DLELPS 237 (582)
T ss_dssp TTEEEEEEEETTT--CCCE-EEC-----CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC-----EE-ECCCSC
T ss_pred CCCeEEEEEcCCC--CCce-Eee-----cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc-----EE-EccCCC
Confidence 7899999987 4433 222 5667789999999999999888888 89999998874 23 556676
Q ss_pred ccEEEEE--------eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEe
Q 048511 223 AAVMDIS--------WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSG 294 (351)
Q Consensus 223 ~~v~~v~--------~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~ 294 (351)
..+..++ |+|||.++++++.|+.+++|++ ++ .... +...+.+++|+ ++.+++++
T Consensus 238 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~----------~~~~---~~~~v~~~~~s---dg~~l~~~ 299 (582)
T 3o4h_A 238 KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GE----------RVEA---PQGNHGRVVLW---RGKLVTSH 299 (582)
T ss_dssp SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TE----------EECC---CSSEEEEEEEE---TTEEEEEE
T ss_pred cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CC----------eecc---CCCceEEEEec---CCEEEEEE
Confidence 6666667 9999988899999999999999 43 2222 23458888887 47888887
Q ss_pred cCCC---eEEEEecCc
Q 048511 295 ADEK---VARVFEAPL 307 (351)
Q Consensus 295 ~~dg---~v~vw~~~~ 307 (351)
+.+. .+.+|+..+
T Consensus 300 s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 300 TSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EETTEEEEEEEETTCC
T ss_pred cCCCCCCeEEEEcCCC
Confidence 7764 466777655
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.80 E-value=3e-16 Score=135.82 Aligned_cols=242 Identities=12% Similarity=0.137 Sum_probs=155.5
Q ss_pred CceEEEEEccCC-CceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEee-CCCcEEEEecCCCcccceeec---c-
Q 048511 5 DNKIHLYRGQRT-GKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSS-QDKVIRIWKLALRGSSANTQS---T- 78 (351)
Q Consensus 5 dg~i~vw~~~~~-~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~-~dg~i~iwd~~~~~~~~~~~~---~- 78 (351)
++.|.+|++... +++..+.....+......+++. +++|++++ .++.|.+|++.....+..... .
T Consensus 74 ~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~d----------g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~ 143 (361)
T 3scy_A 74 QAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTN----------GKNIVTANYSGGSITVFPIGQDGALLPASDVIEFK 143 (361)
T ss_dssp TCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEEC----------SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECC
T ss_pred CCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEEC----------CCEEEEEECCCCEEEEEEeCCCCcCcccceeEEcc
Confidence 489999988763 5566666666555666666664 66666665 688999999976543322111 0
Q ss_pred ---------cccceeeeEeeecCCeEEecC-CceeEEEEEec---------------------cccccceEEEEecCCCC
Q 048511 79 ---------YRKEVISLASYIEGPVLVAGS-SSYQVSVESLL---------------------IGHEDWVYSVQWEPPST 127 (351)
Q Consensus 79 ---------~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~---------------------~~h~~~v~~l~~~p~~~ 127 (351)
.......++++|+|+.+++.+ .+..+.++..- ..+...+..++|+
T Consensus 144 g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s---- 219 (361)
T 3scy_A 144 GSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFN---- 219 (361)
T ss_dssp CCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEEC----
T ss_pred CCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEc----
Confidence 012236789999999665543 34444444221 1223457789999
Q ss_pred CCCCCcccCCCceeEEee-cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC--CeEEEEEc
Q 048511 128 APSDGVSCQQPSSILSAS-MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG--GAFHLWRN 204 (351)
Q Consensus 128 ~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--g~i~~~d~ 204 (351)
+++++ +++++ .++.|.+||+.. +.......+.....+......++|+|++++|+++..+ +.|.+|++
T Consensus 220 --pdg~~------l~v~~~~~~~v~v~~~~~--g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~ 289 (361)
T 3scy_A 220 --SDGKF------AYLINEIGGTVIAFRYAD--GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKV 289 (361)
T ss_dssp --TTSSE------EEEEETTTCEEEEEEEET--TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEE
T ss_pred --CCCCE------EEEEcCCCCeEEEEEecC--CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEE
Confidence 78887 76666 689999999986 5443322222223334457899999999999777765 89999999
Q ss_pred c--cCcccCcccccccccccccEEEEEeecCCCEEEEEe-CCCcEEEEcC--CCccccccCccceEEeccccccccceeE
Q 048511 205 V--GVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS-HDQTTRVFAP--WKNVASLMGENSWHEVARPQVHGHDINC 279 (351)
Q Consensus 205 ~--~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (351)
. ++.. ..+..+.. ...+..++|+|+|++|++++ .++.|.+|++ .+++. ..+. ...+...+.|
T Consensus 290 ~~~~g~~---~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~--------~~~~-~~~~~~~p~~ 356 (361)
T 3scy_A 290 DETNGTL---TKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLL--------TDIK-KDIKVDKPVC 356 (361)
T ss_dssp CTTTCCE---EEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCE--------EECS-CCEECSSEEE
T ss_pred cCCCCcE---EEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcE--------eecc-eeeeCCCCeE
Confidence 6 3321 23333333 45678999999999888877 5789999655 44441 1121 1123345888
Q ss_pred EEEe
Q 048511 280 VTII 283 (351)
Q Consensus 280 ~~~~ 283 (351)
+.|.
T Consensus 357 v~~~ 360 (361)
T 3scy_A 357 LKFV 360 (361)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 8885
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.79 E-value=3.7e-18 Score=161.35 Aligned_cols=258 Identities=14% Similarity=0.110 Sum_probs=168.9
Q ss_pred CCCceEEEEEccCCCceEEEEeeeecCC---ceeEEEeeCCcccCCCCCccEEEEeeC---------CCcEEEEecCCCc
Q 048511 3 GLDNKIHLYRGQRTGKFVRACELKGHTD---WIRSLDFSLPVCTSGEAISILLVSSSQ---------DKVIRIWKLALRG 70 (351)
Q Consensus 3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~---~V~~l~~~~~~~~~~~~~~~~l~t~~~---------dg~i~iwd~~~~~ 70 (351)
+.|++|++||+.+ ++. ...+.+|.. .|.+++|+ |+|++|++++. |+.|++||+.+++
T Consensus 33 ~~d~~i~~~~~~~-g~~--~~~~~~~~~~~~~~~~~~~S--------pDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~ 101 (719)
T 1z68_A 33 SADNNIVLYNIET-GQS--YTILSNRTMKSVNASNYGLS--------PDRQFVYLESDYSKLWRYSYTATYYIYDLSNGE 101 (719)
T ss_dssp CTTSCEEEEESSS-CCE--EEEECHHHHHTTTCSEEEEC--------TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE
T ss_pred cCCCCEEEEEcCC-CcE--EEEEccccccccceeeEEEC--------CCCCeEEEEecCceeEEeecceEEEEEECCCCc
Confidence 3589999999998 743 334444443 48999999 89999998876 7899999999876
Q ss_pred ccceeecccccceeeeEeeecCCeEEecCCceeEEEEEec---------cccccce-----------------EEEEecC
Q 048511 71 SSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLL---------IGHEDWV-----------------YSVQWEP 124 (351)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---------~~h~~~v-----------------~~l~~~p 124 (351)
....... ...+..++|+|+|+.|+.+. +..+.++..- .++...| .++.|+
T Consensus 102 ~~~~~~l--~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wS- 177 (719)
T 1z68_A 102 FVRGNEL--PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWS- 177 (719)
T ss_dssp ECCSSCC--CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEEC-
T ss_pred cccceec--CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEEC-
Confidence 5210111 23577899999999988864 3455444321 2222222 489999
Q ss_pred CCCCCCCCcccCCCceeEEeecCC----------------------------------eEEEEeccCCCcceEEEEEe--
Q 048511 125 PSTAPSDGVSCQQPSSILSASMDK----------------------------------TMMIWQPEKTTGIWMNVVTV-- 168 (351)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~s~~~d~----------------------------------~i~iwd~~~~~~~~~~~~~~-- 168 (351)
|||+. |++++.|. .|++||+.. +.....+.+
T Consensus 178 -----PDG~~------la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~--~~~~~~~~~~~ 244 (719)
T 1z68_A 178 -----PNGKF------LAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY--PAYVGPQEVPV 244 (719)
T ss_dssp -----TTSSE------EEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC--HHHHCCEECCC
T ss_pred -----CCCCE------EEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC--CCccceeEccC
Confidence 79999 99988663 788999987 443201111
Q ss_pred -ccccccccceEEEEEcCCCCEEEEEeeC----CeEEEEE----cccCcccCccccccc----ccccccEE-----EEEe
Q 048511 169 -GELSHSALGFYGGHWSPDGRSILAHGYG----GAFHLWR----NVGVDIDNWQPQKVP----SGHFAAVM-----DISW 230 (351)
Q Consensus 169 -~~~~~~~~~i~~i~~~~~~~~l~~~~~d----g~i~~~d----~~~~~~~~~~~~~~~----~~~~~~v~-----~v~~ 230 (351)
.....+...+..++|+||++++++.... ..|.+|| +.+++ +...+ ..|...+. .+.|
T Consensus 245 ~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (719)
T 1z68_A 245 PAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD-----CPKTQEHIEESRTGWAGGFFVSTPVF 319 (719)
T ss_dssp CHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE-----CCGGGEEEEECSSSCSSSSSCCCCEE
T ss_pred CccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc-----eEEEEecccccCCceEccccCCccEE
Confidence 1122466778999999998777764433 2488888 66653 33334 35666666 7899
Q ss_pred ecCCCEEEE--EeCCC--cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecC----CCeEEE
Q 048511 231 SRSSDYLLS--VSHDQ--TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD----EKVARV 302 (351)
Q Consensus 231 sp~~~~l~s--~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~----dg~v~v 302 (351)
+|+|+.|+. ...++ .|.+||+..+.. ..+ ..+...+..+.+.. ++.+++++.. ++.+++
T Consensus 320 spdg~~l~~~~~~~~g~~~l~~~~~~~~~~--------~~l---t~~~~~v~~~~~~d--~~~i~~~~~~~~~~~~~~~l 386 (719)
T 1z68_A 320 SYDAISYYKIFSDKDGYKHIHYIKDTVENA--------IQI---TSGKWEAINIFRVT--QDSLFYSSNEFEEYPGRRNI 386 (719)
T ss_dssp CTTSSCEEEEEECTTSCEEEEEESSCSTTC--------EEC---SCSSSCEEEEEEEC--SSEEEEEESCGGGCTTCBEE
T ss_pred CCCCCeEEEEEEccCCceEEEEEECCCCce--------Eec---ccCceEEEEEEEEe--CCEEEEEEecCCCCCceEEE
Confidence 999986554 44455 577778765541 122 23344466666654 4555555555 588899
Q ss_pred EecC
Q 048511 303 FEAP 306 (351)
Q Consensus 303 w~~~ 306 (351)
|.++
T Consensus 387 ~~~~ 390 (719)
T 1z68_A 387 YRIS 390 (719)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9864
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.77 E-value=9.2e-18 Score=158.64 Aligned_cols=237 Identities=8% Similarity=0.004 Sum_probs=157.0
Q ss_pred EEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc--cceeeeEeeecCCeEEecCC---------ce
Q 048511 34 SLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR--KEVISLASYIEGPVLVAGSS---------SY 102 (351)
Q Consensus 34 ~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~---------~~ 102 (351)
.++|+ +++.+++++ .|++|++||+.+++.......... ..+..++|+|+|+.|+.+.. +.
T Consensus 20 ~~~~s--------~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~ 90 (719)
T 1z68_A 20 FPNWI--------SGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTA 90 (719)
T ss_dssp CCEES--------SSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccEEC--------CCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecce
Confidence 67899 788666554 699999999998875443332111 13788999999999988765 46
Q ss_pred eEEEEEeccc-------cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc
Q 048511 103 QVSVESLLIG-------HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA 175 (351)
Q Consensus 103 ~~~~~~~~~~-------h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 175 (351)
.+.++..-.+ ....+..++|+ |||+. |+.+. ++.|++||+.+ +....... .++.
T Consensus 91 ~i~~~d~~~g~~~~~~~l~~~~~~~~~S------PDG~~------la~~~-~~~i~~~~~~~--g~~~~l~~----~~~~ 151 (719)
T 1z68_A 91 TYYIYDLSNGEFVRGNELPRPIQYLCWS------PVGSK------LAYVY-QNNIYLKQRPG--DPPFQITF----NGRE 151 (719)
T ss_dssp EEEEEETTTTEECCSSCCCSSBCCEEEC------SSTTC------EEEEE-TTEEEEESSTT--SCCEECCC----CCBT
T ss_pred EEEEEECCCCccccceecCcccccceEC------CCCCE------EEEEE-CCeEEEEeCCC--CCcEEEec----CCCc
Confidence 6666653222 22457889999 79998 88885 78999999987 44332111 1222
Q ss_pred cce-----------------EEEEEcCCCCEEEEEeeCC----------------------------------eEEEEEc
Q 048511 176 LGF-----------------YGGHWSPDGRSILAHGYGG----------------------------------AFHLWRN 204 (351)
Q Consensus 176 ~~i-----------------~~i~~~~~~~~l~~~~~dg----------------------------------~i~~~d~ 204 (351)
..+ .+++|+|||++|++++.|. .|++||+
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~ 231 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDT 231 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEES
T ss_pred CCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEEC
Confidence 212 4899999999999988652 7889999
Q ss_pred ccCccc---CcccccccccccccEEEEEeecCCCEEEEEeCC----CcEEEEc----CCCccccccCccceEEeccc---
Q 048511 205 VGVDID---NWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD----QTTRVFA----PWKNVASLMGENSWHEVARP--- 270 (351)
Q Consensus 205 ~~~~~~---~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d----g~i~vwd----~~~~~~~~~~~~~~~~~~~~--- 270 (351)
.+++.. .......+.+|...+..++|+||++++++.... ..|.+|| ..+++. ....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~----------~~~~~~~ 301 (719)
T 1z68_A 232 TYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC----------PKTQEHI 301 (719)
T ss_dssp SCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC----------CGGGEEE
T ss_pred CCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce----------EEEEecc
Confidence 876420 000002345688889999999998877764432 2488899 666542 1122
Q ss_pred -ccccccee-----EEEEeeeCCCcEEE--EecCCC--eEEEEecCchhh
Q 048511 271 -QVHGHDIN-----CVTIIQGKGNHRFV--SGADEK--VARVFEAPLSFL 310 (351)
Q Consensus 271 -~~~~~~i~-----~~~~~~~~~~~~l~--s~~~dg--~v~vw~~~~~~~ 310 (351)
..|...+. .++|+| |++.|+ +...+| .|.+|++.+...
T Consensus 302 ~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~g~~~l~~~~~~~~~~ 349 (719)
T 1z68_A 302 EESRTGWAGGFFVSTPVFSY--DAISYYKIFSDKDGYKHIHYIKDTVENA 349 (719)
T ss_dssp EECSSSCSSSSSCCCCEECT--TSSCEEEEEECTTSCEEEEEESSCSTTC
T ss_pred cccCCceEccccCCccEECC--CCCeEEEEEEccCCceEEEEEECCCCce
Confidence 24555555 789999 887544 344555 566677664333
No 160
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.76 E-value=3.8e-16 Score=133.44 Aligned_cols=244 Identities=11% Similarity=0.028 Sum_probs=169.9
Q ss_pred CCceeEEEeeCCcccCCCCCccEEEEeeCC------------------------CcEEEEecCCCcccceeeccccccee
Q 048511 29 TDWIRSLDFSLPVCTSGEAISILLVSSSQD------------------------KVIRIWKLALRGSSANTQSTYRKEVI 84 (351)
Q Consensus 29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~ 84 (351)
-+.+.+|+++ ++++++++...+ ++|.+||..+++..............
T Consensus 23 l~~v~~va~d--------~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~ 94 (329)
T 3fvz_A 23 PGQVSGVALD--------SKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPH 94 (329)
T ss_dssp CSCEEEEEEC--------TTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEE
T ss_pred cCCceEEEEC--------CCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCce
Confidence 4579999999 889999888777 47999999877765443333334677
Q ss_pred eeEeeecCCeEEecCCceeEEEEEe---------c---------cccccceEEEEecCCCCCCCCCcccCCCceeEEee-
Q 048511 85 SLASYIEGPVLVAGSSSYQVSVESL---------L---------IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS- 145 (351)
Q Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~~~~---------~---------~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~- 145 (351)
.++++++|+++++......+..+.. + .++......++++| .++.+ +++.+
T Consensus 95 gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~-----~~g~l------yv~d~~ 163 (329)
T 3fvz_A 95 GLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEP-----STGAV------FVSDGY 163 (329)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECT-----TTCCE------EEEECS
T ss_pred EEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeC-----CCCeE------EEEeCC
Confidence 8999999998887766665554432 1 23334688999993 26777 77776
Q ss_pred cCCeEEEEeccCCCcceEEEEEeccc-----cccccceEEEEEcCC-CCEEEEEeeCCeEEEEEcccCcccCccccccc-
Q 048511 146 MDKTMMIWQPEKTTGIWMNVVTVGEL-----SHSALGFYGGHWSPD-GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP- 218 (351)
Q Consensus 146 ~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~- 218 (351)
.++.|++||.. +..+..+..... ..+-.....++++|+ +.++++...++.|++||..+++ .+..+
T Consensus 164 ~~~~I~~~~~~---g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~-----~~~~~~ 235 (329)
T 3fvz_A 164 CNSRIVQFSPS---GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE-----FVREIK 235 (329)
T ss_dssp SCCEEEEECTT---SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC-----EEEEEC
T ss_pred CCCeEEEEcCC---CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc-----EEEEEe
Confidence 68999999943 555554431110 112234789999998 6666777788999999998653 33333
Q ss_pred -ccccccEEEEEeec------CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEE
Q 048511 219 -SGHFAAVMDISWSR------SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRF 291 (351)
Q Consensus 219 -~~~~~~v~~v~~sp------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 291 (351)
..+...+..++|+| +++.+++...+..|++||..+++. ...+.....+...+..+++++ ++.++
T Consensus 236 ~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~-------~~~~~~~~~~~~~p~~ia~~~--dG~ly 306 (329)
T 3fvz_A 236 HASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEI-------IDVFKPVRKHFDMPHDIVASE--DGTVY 306 (329)
T ss_dssp CTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCE-------EEEECCSSSCCSSEEEEEECT--TSEEE
T ss_pred ccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeE-------EEEEcCCCCccCCeeEEEECC--CCCEE
Confidence 34556788999999 333333334456899999988762 222222235556689999999 88999
Q ss_pred EEecCCCeEEEEecCch
Q 048511 292 VSGADEKVARVFEAPLS 308 (351)
Q Consensus 292 ~s~~~dg~v~vw~~~~~ 308 (351)
++...++.|++|++.+.
T Consensus 307 vad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 307 IGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EEESSSCCEEEEEEEEC
T ss_pred EEECCCCEEEEEeCCcc
Confidence 99999999999998753
No 161
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.75 E-value=1.7e-16 Score=135.66 Aligned_cols=213 Identities=8% Similarity=-0.025 Sum_probs=145.2
Q ss_pred CCCceEEEEEccCCCceEEEEeeee---cCCceeEEEeeCCcccCCCCCccEEEEee------------CCCcEEEEecC
Q 048511 3 GLDNKIHLYRGQRTGKFVRACELKG---HTDWIRSLDFSLPVCTSGEAISILLVSSS------------QDKVIRIWKLA 67 (351)
Q Consensus 3 ~~dg~i~vw~~~~~~~~~~~~~~~~---h~~~V~~l~~~~~~~~~~~~~~~~l~t~~------------~dg~i~iwd~~ 67 (351)
..++.|.+||+.+ ++......+.. |...+.+++|+ +++++|++++ .++.|.+||+.
T Consensus 53 ~~~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~s--------~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~ 123 (337)
T 1pby_B 53 NKSESLVKIDLVT-GETLGRIDLSTPEERVKSLFGAALS--------PDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123 (337)
T ss_dssp TTTTEEEEEETTT-CCEEEEEECCBTTEEEECTTCEEEC--------TTSSEEEEEEEEEEECSSCEEECCCEEEEEETT
T ss_pred CCCCeEEEEECCC-CCeEeeEEcCCcccccccccceEEC--------CCCCEEEEEecccccccccccccCceEEEEECC
Confidence 4578999999988 64433222221 22367889999 8898888886 57999999998
Q ss_pred CCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCc
Q 048511 68 LRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPS 139 (351)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~ 139 (351)
+++....... ...+..++++|+++.+++++ ..+.++.. +..+.. ...+.|+ +++..
T Consensus 124 ~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~--~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s------~dg~~----- 187 (337)
T 1pby_B 124 TLSRRKAFEA--PRQITMLAWARDGSKLYGLG--RDLHVMDPEAGTLVEDKPIQSW-EAETYAQ------PDVLA----- 187 (337)
T ss_dssp TTEEEEEEEC--CSSCCCEEECTTSSCEEEES--SSEEEEETTTTEEEEEECSTTT-TTTTBCC------CBCCC-----
T ss_pred CCcEEEEEeC--CCCcceeEECCCCCEEEEeC--CeEEEEECCCCcEeeeeecccc-CCCceeC------CCccE-----
Confidence 7765544433 33567888999999887773 34444332 111110 0112555 55554
Q ss_pred eeEEee-cCC-----------------------eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee
Q 048511 140 SILSAS-MDK-----------------------TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY 195 (351)
Q Consensus 140 ~l~s~~-~d~-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 195 (351)
++..+ .++ .|.+||+.+ ++.. .... ..+...+.+++|+|++++++++
T Consensus 188 -l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~--~~~~-~~~~---~~~~~~~~~~~~s~dg~~l~~~-- 258 (337)
T 1pby_B 188 -VWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET--GEMA-MREV---RIMDVFYFSTAVNPAKTRAFGA-- 258 (337)
T ss_dssp -CCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT--CCEE-EEEE---EECSSCEEEEEECTTSSEEEEE--
T ss_pred -EeeeccCCCceeeeeeccccccccccccccccceEEEeCCC--CCce-Eeec---CCCCCceeeEEECCCCCEEEEe--
Confidence 43333 222 478999988 5443 3222 2344568899999999999888
Q ss_pred CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511 196 GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 196 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
++.|.+||+.+++ .+..+.. ...+.+++|+|++++|++++.++.|++||+.+++
T Consensus 259 ~~~v~~~d~~~~~-----~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 259 YNVLESFDLEKNA-----SIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp ESEEEEEETTTTE-----EEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred CCeEEEEECCCCc-----CcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 7999999998763 3344432 3457899999999999988899999999998876
No 162
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.74 E-value=1e-15 Score=132.34 Aligned_cols=269 Identities=13% Similarity=0.084 Sum_probs=171.5
Q ss_pred CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEee----------CCCcEEEEecCCCcccc
Q 048511 4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSS----------QDKVIRIWKLALRGSSA 73 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~----------~dg~i~iwd~~~~~~~~ 73 (351)
.|+.|++||..+ ++. +..+..+..+ .++|+ +++++|+++. .+++|.+||..+.+...
T Consensus 29 ~d~~v~v~D~~t-~~~--~~~i~~g~~p--~i~~s--------pdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~ 95 (361)
T 2oiz_A 29 TESRVHVYDYTN-GKF--LGMVPTAFNG--HVQVS--------NDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEK 95 (361)
T ss_dssp GGCEEEEEETTT-CCE--EEEEECCEEE--EEEEC--------TTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEE
T ss_pred ccCeEEEEECCC-CeE--EEEecCCCCC--ceEEC--------CCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEE
Confidence 478999999988 643 4566666555 89999 8899999886 36789999998877665
Q ss_pred eeecc-----cccceeeeEeeecCCeEEecCC--ceeEEEEEecccc-------ccceEEEEecCCCCCCCCCcccCCCc
Q 048511 74 NTQST-----YRKEVISLASYIEGPVLVAGSS--SYQVSVESLLIGH-------EDWVYSVQWEPPSTAPSDGVSCQQPS 139 (351)
Q Consensus 74 ~~~~~-----~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~h-------~~~v~~l~~~p~~~~~~~~~~~~~~~ 139 (351)
.+... .......++++|+|++++++.. ...+.++..-.+. ......+.+.| .....
T Consensus 96 ~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p-----~~~~~----- 165 (361)
T 2oiz_A 96 EISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQP-----NRPRS----- 165 (361)
T ss_dssp EEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECT-----TSSSE-----
T ss_pred EEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcC-----CCCee-----
Confidence 55432 1235678899999999998753 4566655432110 01112244563 22245
Q ss_pred eeEEeecCCeEEEEeccCCCcceEEEEEe-ccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccc
Q 048511 140 SILSASMDKTMMIWQPEKTTGIWMNVVTV-GELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP 218 (351)
Q Consensus 140 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 218 (351)
+++.+.||.+.+|++... +........ ........+ ..+.+++++..++..+.++.+.++|+..............
T Consensus 166 -~~~~~~dg~~~~v~~~~~-g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~ 242 (361)
T 2oiz_A 166 -FMTICGDGGLLTINLGED-GKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLL 242 (361)
T ss_dssp -EEEEETTSSEEEEEECTT-SSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESC
T ss_pred -EEEECCCCcEEEEEECCC-CcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceeccccccc
Confidence 888899999999998642 332211110 001111111 2334467777777778889999999865432100000000
Q ss_pred c---cc----cccEEEEEeecCCCEEEEEeC-----------CCcEEEEcCCCccccccCccceEEeccccccccceeEE
Q 048511 219 S---GH----FAAVMDISWSRSSDYLLSVSH-----------DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCV 280 (351)
Q Consensus 219 ~---~~----~~~v~~v~~sp~~~~l~s~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (351)
. .+ ......++|+|+++.++++.. .+.|.+||+.+.+ .+..+..+. +..+
T Consensus 243 ~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~----------~v~~i~~~~--p~~i 310 (361)
T 2oiz_A 243 NDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ----------RVARIPGRD--ALSM 310 (361)
T ss_dssp CHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE----------EEEEEECTT--CCEE
T ss_pred CccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc----------EEEEEecCC--eeEE
Confidence 0 00 111223789999888776543 3489999998876 555555555 8999
Q ss_pred EEeeeCCCcEEEEecCCCeEEEEecC-c--hhhhce
Q 048511 281 TIIQGKGNHRFVSGADEKVARVFEAP-L--SFLKTL 313 (351)
Q Consensus 281 ~~~~~~~~~~l~s~~~dg~v~vw~~~-~--~~~~~~ 313 (351)
+|+| ++++|++++. +.|.+||.. + +.++++
T Consensus 311 a~sp--dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 311 TIDQ--QRNLMLTLDG-GNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp EEET--TTTEEEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred EECC--CCCEEEEeCC-CeEEEEECCCCcceeeEEe
Confidence 9999 8998888877 999999987 5 555544
No 163
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.73 E-value=6.6e-15 Score=123.10 Aligned_cols=235 Identities=10% Similarity=0.093 Sum_probs=159.9
Q ss_pred ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeec-----ccccceeeeEee-ecCCeEEecCC
Q 048511 27 GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQS-----TYRKEVISLASY-IEGPVLVAGSS 100 (351)
Q Consensus 27 ~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~l~~~~~ 100 (351)
+|-..+.+|+++ +++.++++...++.|.+||.. +........ .....+..+++. +++.++++...
T Consensus 27 g~~~~p~~v~~~--------~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~ 97 (286)
T 1q7f_A 27 GQFTEPSGVAVN--------AQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS 97 (286)
T ss_dssp TCBSCEEEEEEC--------TTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG
T ss_pred CccCCCceEEEC--------CCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC
Confidence 445678999999 788888888889999999987 333322221 112356677884 66666666532
Q ss_pred -ceeEEEEE-------ec-cccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccc
Q 048511 101 -SYQVSVES-------LL-IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGEL 171 (351)
Q Consensus 101 -~~~~~~~~-------~~-~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 171 (351)
+..+..+. .+ ..+...+.++++. +++++ +++...++.|.+||.. +..+..+..
T Consensus 98 ~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~------~~g~l------~v~~~~~~~i~~~~~~---g~~~~~~~~--- 159 (286)
T 1q7f_A 98 PTHQIQIYNQYGQFVRKFGATILQHPRGVTVD------NKGRI------IVVECKVMRVIIFDQN---GNVLHKFGC--- 159 (286)
T ss_dssp GGCEEEEECTTSCEEEEECTTTCSCEEEEEEC------TTSCE------EEEETTTTEEEEECTT---SCEEEEEEC---
T ss_pred CCCEEEEECCCCcEEEEecCccCCCceEEEEe------CCCCE------EEEECCCCEEEEEcCC---CCEEEEeCC---
Confidence 44444332 22 1234568899999 77887 8887888999999965 444444321
Q ss_pred cccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc--cccccEEEEEeecCCCEEEEEeCCC-cEEE
Q 048511 172 SHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS--GHFAAVMDISWSRSSDYLLSVSHDQ-TTRV 248 (351)
Q Consensus 172 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--~~~~~v~~v~~sp~~~~l~s~~~dg-~i~v 248 (351)
..+...+..++++++++++++...++.|++||.... .+..+. ++...+..++++++|+++++...++ .|.+
T Consensus 160 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~------~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~ 233 (286)
T 1q7f_A 160 SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ------YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTI 233 (286)
T ss_dssp TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC------EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEE
T ss_pred CCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC------EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEE
Confidence 123346889999999997777778999999998553 233332 2235789999999999888887776 9999
Q ss_pred EcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 249 FAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 249 wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
||..... ...+... .....+.++++++ +++++++ +.|+.|++|+..
T Consensus 234 ~~~~g~~--------~~~~~~~-~~~~~~~~i~~~~--~g~l~vs-~~~~~v~v~~~~ 279 (286)
T 1q7f_A 234 FTQDGQL--------ISALESK-VKHAQCFDVALMD--DGSVVLA-SKDYRLYIYRYV 279 (286)
T ss_dssp ECTTSCE--------EEEEEES-SCCSCEEEEEEET--TTEEEEE-ETTTEEEEEECS
T ss_pred ECCCCCE--------EEEEccc-CCCCcceeEEECC--CCcEEEE-CCCCeEEEEEcc
Confidence 9964322 1122111 1222477899999 8887777 569999999965
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.72 E-value=6.9e-16 Score=146.14 Aligned_cols=241 Identities=10% Similarity=0.049 Sum_probs=155.4
Q ss_pred CceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc----ceeeeEeeecCCeEEecCCcee--
Q 048511 30 DWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK----EVISLASYIEGPVLVAGSSSYQ-- 103 (351)
Q Consensus 30 ~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~-- 103 (351)
....++.|+ +++.+|+++ |++|++||+.+++....+...... ......++|||+.++.+..+..
T Consensus 17 ~~~~~~~w~--------~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~ 86 (740)
T 4a5s_A 17 LKLYSLRWI--------SDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQW 86 (740)
T ss_dssp CCCCCEEEC--------SSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECS
T ss_pred ccccccEEC--------CCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeE
Confidence 346689999 889899886 999999999988764433222111 1223788999999888765422
Q ss_pred -------EEEEE-------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEec
Q 048511 104 -------VSVES-------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVG 169 (351)
Q Consensus 104 -------~~~~~-------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 169 (351)
+.++. .+..|...+...+|+ |||+. ||.+ .++.|++||+.. +.... +..
T Consensus 87 r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~S------PdG~~------la~~-~~~~i~~~~~~~--~~~~~-lt~- 149 (740)
T 4a5s_A 87 RHSYTASYDIYDLNKRQLITEERIPNNTQWVTWS------PVGHK------LAYV-WNNDIYVKIEPN--LPSYR-ITW- 149 (740)
T ss_dssp SSCEEEEEEEEETTTTEECCSSCCCTTEEEEEEC------SSTTC------EEEE-ETTEEEEESSTT--SCCEE-CCS-
T ss_pred EEccceEEEEEECCCCcEEEcccCCCcceeeEEC------CCCCE------EEEE-ECCeEEEEECCC--CceEE-EcC-
Confidence 22332 345567789999999 79998 8887 578999999987 44222 110
Q ss_pred cccccccce-----------------EEEEEcCCCCEEEEEeeCC-----------------------------------
Q 048511 170 ELSHSALGF-----------------YGGHWSPDGRSILAHGYGG----------------------------------- 197 (351)
Q Consensus 170 ~~~~~~~~i-----------------~~i~~~~~~~~l~~~~~dg----------------------------------- 197 (351)
.++...+ ..+.|+|||+.|+....|.
T Consensus 150 --~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~ 227 (740)
T 4a5s_A 150 --TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPT 227 (740)
T ss_dssp --CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCE
T ss_pred --CCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCe
Confidence 1121112 3489999999998876432
Q ss_pred -eEEEEEccc---CcccCcccccccc------cccccEEEEEeecCCCEEEEEeC----CCcEEEEcCCCccccccCccc
Q 048511 198 -AFHLWRNVG---VDIDNWQPQKVPS------GHFAAVMDISWSRSSDYLLSVSH----DQTTRVFAPWKNVASLMGENS 263 (351)
Q Consensus 198 -~i~~~d~~~---~~~~~~~~~~~~~------~~~~~v~~v~~sp~~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~ 263 (351)
.|++||+.+ ++.. ....+. +|...+..++|+|||+.++.... +..|++||+.+++. .
T Consensus 228 ~~l~v~d~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~------~ 298 (740)
T 4a5s_A 228 VKFFVVNTDSLSSVTNA---TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSG------R 298 (740)
T ss_dssp EEEEEEETTSCCSSSCC---CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTT------E
T ss_pred eEEEEEECCCCCCCCcc---eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcc------c
Confidence 477888877 5210 111222 37778999999999997665432 34799999987651 0
Q ss_pred eEE--eccc--ccccccee-----EEEEeeeCCCcEEE-Eec-CC--CeEEEEecCchhh
Q 048511 264 WHE--VARP--QVHGHDIN-----CVTIIQGKGNHRFV-SGA-DE--KVARVFEAPLSFL 310 (351)
Q Consensus 264 ~~~--~~~~--~~~~~~i~-----~~~~~~~~~~~~l~-s~~-~d--g~v~vw~~~~~~~ 310 (351)
+.+ +..+ ..|...+. ..+|+| ||+.|+ ..+ .+ ..|++|++.+...
T Consensus 299 ~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp--DG~~l~~~~s~~~G~~~l~~~~~~~~~~ 356 (740)
T 4a5s_A 299 WNCLVARQHIEMSTTGWVGRFRPSEPHFTL--DGNSFYKIISNEEGYRHICYFQIDKKDC 356 (740)
T ss_dssp EEECGGGCEEEECSSSCSSSSSCCCCEECT--TSSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred cceeEEEEeeeccCCceEccCcCCCceEcC--CCCEEEEEEEcCCCceEEEEEECCCCce
Confidence 101 1111 23333333 788999 888776 555 33 4688888775433
No 165
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.69 E-value=2.2e-15 Score=129.46 Aligned_cols=156 Identities=8% Similarity=-0.019 Sum_probs=107.9
Q ss_pred CCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCC
Q 048511 47 AISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPS 126 (351)
Q Consensus 47 ~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 126 (351)
+++.++++++.+++|.+||+.+++...... .+....+..++|+
T Consensus 9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~----------------------------------~~~~~~~~~~~~s--- 51 (349)
T 1jmx_B 9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCV----------------------------------MPDKFGPGTAMMA--- 51 (349)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEEEEEE----------------------------------CSSCCSSCEEEEC---
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcEEEEEe----------------------------------cCCCCCCceeEEC---
Confidence 678899999999999999998765432221 1111246788999
Q ss_pred CCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccc-ccccceEEEEEcCCCCEEEEEeeC---------
Q 048511 127 TAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELS-HSALGFYGGHWSPDGRSILAHGYG--------- 196 (351)
Q Consensus 127 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d--------- 196 (351)
++++. ++++...++.|.+||+.+ ++....+...... .....+..++|+|+++++++++.+
T Consensus 52 ---~dg~~-----~~v~~~~~~~i~~~d~~t--~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 121 (349)
T 1jmx_B 52 ---PDNRT-----AYVLNNHYGDIYGIDLDT--CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 121 (349)
T ss_dssp ---TTSSE-----EEEEETTTTEEEEEETTT--TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred ---CCCCE-----EEEEeCCCCcEEEEeCCC--CcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccc
Confidence 67764 045566789999999988 6666555421100 002236789999999999998866
Q ss_pred ---CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511 197 ---GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 197 ---g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
+.|.+||+.+++.. ..+..+. +...+.+++|+|+++ +++++. .|++||+.+++
T Consensus 122 ~~~~~i~~~d~~~~~~~--~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~ 177 (349)
T 1jmx_B 122 VKPPRLEVFSTADGLEA--KPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGK 177 (349)
T ss_dssp ECCCEEEEEEGGGGGGB--CCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCC
T ss_pred cCCCeEEEEECCCcccc--ceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCc
Confidence 99999999875321 1222232 334688899999999 555543 49999998775
No 166
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.68 E-value=1.1e-14 Score=124.28 Aligned_cols=262 Identities=7% Similarity=-0.035 Sum_probs=171.6
Q ss_pred CCCCceEEEEEccCCCceEEEEee-e-----ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccccee
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACEL-K-----GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANT 75 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~-~-----~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~ 75 (351)
|+.+++|.+||.++ +++. ..+ . ........+.+. +++++++...++.|.+||..+++.+..+
T Consensus 13 g~~~~~l~~~d~~t-~~~~--~~i~~~~n~~~lg~~~~~i~~~---------~~~lyv~~~~~~~v~viD~~t~~~~~~i 80 (328)
T 3dsm_A 13 QYSNATLSYYDPAT-CEVE--NEVFYRANGFKLGDVAQSMVIR---------DGIGWIVVNNSHVIFAIDINTFKEVGRI 80 (328)
T ss_dssp TSCCBEEEEEETTT-TEEE--CSHHHHHHSSCCBSCEEEEEEE---------TTEEEEEEGGGTEEEEEETTTCCEEEEE
T ss_pred CCCCceEEEEECCC-CEEh--hhhHhhhcCcccCccceEEEEE---------CCEEEEEEcCCCEEEEEECcccEEEEEc
Confidence 56789999999998 7432 222 1 112345778776 3556666667899999999988876655
Q ss_pred ecccccceeeeEeeecCCeEEecCCceeEEEEEeccc--------cc-----cceEEEEecCCCCCCCCCcccCCCceeE
Q 048511 76 QSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIG--------HE-----DWVYSVQWEPPSTAPSDGVSCQQPSSIL 142 (351)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------h~-----~~v~~l~~~p~~~~~~~~~~~~~~~~l~ 142 (351)
. .......+++++++..+++...+..+..+..-.+ .. .....+++. ++.+ ++
T Consensus 81 ~--~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~-------~~~l------yv 145 (328)
T 3dsm_A 81 T--GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQY-------GKYV------YV 145 (328)
T ss_dssp E--CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEE-------TTEE------EE
T ss_pred C--CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEE-------CCEE------EE
Confidence 3 2356778888888855555435555554432111 00 022233332 2333 44
Q ss_pred Eee-cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC----------CeEEEEEcccCcccC
Q 048511 143 SAS-MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG----------GAFHLWRNVGVDIDN 211 (351)
Q Consensus 143 s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----------g~i~~~d~~~~~~~~ 211 (351)
+.. .++.|.++|+.+ ++....+... .....++++|++++++++..+ +.|.++|..+.+
T Consensus 146 ~~~~~~~~v~viD~~t--~~~~~~i~~g------~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~--- 214 (328)
T 3dsm_A 146 NCWSYQNRILKIDTET--DKVVDELTIG------IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT--- 214 (328)
T ss_dssp EECTTCCEEEEEETTT--TEEEEEEECS------SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE---
T ss_pred EcCCCCCEEEEEECCC--CeEEEEEEcC------CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe---
Confidence 443 488999999998 7766666532 234578899999977776655 789999998763
Q ss_pred cccccccccc-cccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcE
Q 048511 212 WQPQKVPSGH-FAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHR 290 (351)
Q Consensus 212 ~~~~~~~~~~-~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 290 (351)
....+... ......++|+|+++.|+++.. .|.+||..+++.. ..............++++| .++.+
T Consensus 215 --v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~--------~~~~~~~~~~~p~gi~vdp-~~g~l 281 (328)
T 3dsm_A 215 --VEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP--------VRPFLEFRDTKYYGLTVNP-NNGEV 281 (328)
T ss_dssp --EEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC--------SSCSBCCCSSCEEEEEECT-TTCCE
T ss_pred --EEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCcee--------eeeeecCCCCceEEEEEcC-CCCeE
Confidence 23333221 236789999999998887754 8999999877621 0011111245588999997 35667
Q ss_pred EEEe----cCCCeEEEEecCchhhhcee
Q 048511 291 FVSG----ADEKVARVFEAPLSFLKTLN 314 (351)
Q Consensus 291 l~s~----~~dg~v~vw~~~~~~~~~~~ 314 (351)
+++. ..++.|.+||..++.+.++.
T Consensus 282 yva~~~~y~~~~~V~v~d~~g~~~~~i~ 309 (328)
T 3dsm_A 282 YVADAIDYQQQGIVYRYSPQGKLIDEFY 309 (328)
T ss_dssp EEEECTTSSSEEEEEEECTTCCEEEEEE
T ss_pred EEEcccccccCCEEEEECCCCCEEEEEE
Confidence 7776 67899999999988887775
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.68 E-value=2.2e-15 Score=131.60 Aligned_cols=252 Identities=12% Similarity=0.037 Sum_probs=156.5
Q ss_pred eEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccce--e
Q 048511 7 KIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV--I 84 (351)
Q Consensus 7 ~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~ 84 (351)
.|.+||+.+ ++. .....+|...+..+.|+ ++++.|+.++.++.|.+||+.+++........ .... .
T Consensus 61 ~l~~~d~~~-g~~--~~lt~~~~~~~~~~~~s--------pdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~-~~~~~~~ 128 (388)
T 3pe7_A 61 NYYLLDLNT-QVA--TQLTEGRGDNTFGGFLS--------PDDDALFYVKDGRNLMRVDLATLEENVVYQVP-AEWVGYG 128 (388)
T ss_dssp EEEEEETTT-CEE--EECCCSSCBCSSSCEEC--------TTSSEEEEEETTTEEEEEETTTCCEEEEEECC-TTEEEEE
T ss_pred eEEEEeCCC-Cce--EEeeeCCCCCccceEEc--------CCCCEEEEEeCCCeEEEEECCCCcceeeeech-hhccccc
Confidence 488888887 643 33445666666678899 89999999999999999999987654333222 1112 2
Q ss_pred eeEeeecCCeEEec----------------------CCceeEEEEE-------eccccccceEEEEecCCCCCCC-CCcc
Q 048511 85 SLASYIEGPVLVAG----------------------SSSYQVSVES-------LLIGHEDWVYSVQWEPPSTAPS-DGVS 134 (351)
Q Consensus 85 ~~~~~~~~~~l~~~----------------------~~~~~~~~~~-------~~~~h~~~v~~l~~~p~~~~~~-~~~~ 134 (351)
...+++++..++.. .....+..+. .+..+...+..+.|+ | +++.
T Consensus 129 ~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~s------p~dg~~ 202 (388)
T 3pe7_A 129 TWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYR------PYDDST 202 (388)
T ss_dssp EEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEE------TTEEEE
T ss_pred ceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEEC------CCCCCE
Confidence 23347788777631 1223333322 233455668899999 7 8888
Q ss_pred cCCCceeEEeecC------CeEEEEeccCCCcceEEEEEeccccccc--cceEEEEEcCCCCEEEEEee-CC----eEEE
Q 048511 135 CQQPSSILSASMD------KTMMIWQPEKTTGIWMNVVTVGELSHSA--LGFYGGHWSPDGRSILAHGY-GG----AFHL 201 (351)
Q Consensus 135 ~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~-dg----~i~~ 201 (351)
|+..+.+ ..|.++|+.. +.. ..+. .+. ..+...+|+|+|+.|+..+. ++ .|++
T Consensus 203 ------l~~~~~~~~~~~~~~l~~~d~~~--~~~-~~l~-----~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (388)
T 3pe7_A 203 ------VAFCHEGPHDLVDARMWLINEDG--TNM-RKVK-----THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYS 268 (388)
T ss_dssp ------EEEEECSCTTTSSCSEEEEETTS--CCC-EESC-----CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEE
T ss_pred ------EEEEEecCCCCCcceEEEEeCCC--Cce-EEee-----eCCCCcccccceECCCCCEEEEEecCCCCCcceEEE
Confidence 8777653 3677777765 322 1221 222 35778899999997765443 22 3999
Q ss_pred EEcccCcccCccccccccccccc---EEEEEeecCCCEEEEE---------eCCCcEEEEcCCCccccccCccceEEecc
Q 048511 202 WRNVGVDIDNWQPQKVPSGHFAA---VMDISWSRSSDYLLSV---------SHDQTTRVFAPWKNVASLMGENSWHEVAR 269 (351)
Q Consensus 202 ~d~~~~~~~~~~~~~~~~~~~~~---v~~v~~sp~~~~l~s~---------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 269 (351)
||+.+++. ..+..+.++... ...+.|+|+|+.|+.. ..+..|++||+.+++. ..+.
T Consensus 269 ~d~~~g~~---~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--------~~l~- 336 (388)
T 3pe7_A 269 ADPETLEN---RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ--------HRVA- 336 (388)
T ss_dssp ECTTTCCE---EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE--------EEEE-
T ss_pred EecCCCce---EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce--------EEec-
Confidence 99988753 222223221110 1123799999987753 4567899999987652 1221
Q ss_pred cccccc-----------ceeEEEEeeeCCCcEEEEec-CCCeEEEEecC
Q 048511 270 PQVHGH-----------DINCVTIIQGKGNHRFVSGA-DEKVARVFEAP 306 (351)
Q Consensus 270 ~~~~~~-----------~i~~~~~~~~~~~~~l~s~~-~dg~v~vw~~~ 306 (351)
.+.. .+.+++|+| |++.|+..+ .+|...||.++
T Consensus 337 --~~~~~~~~~~~~~~~~~~~~~~sp--Dg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 337 --RHDTSWKVFEGDRQVTHPHPSFTP--DDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp --ECCCCCCCBTTBSSTTCCCCEECT--TSSEEEEEECTTSSCEEEEEE
T ss_pred --cccCcccccccccccCCCCccCCC--CCCEEEEEecCCCceeEEEEE
Confidence 2222 467889999 888777555 57777777644
No 168
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.68 E-value=8.3e-15 Score=127.02 Aligned_cols=223 Identities=8% Similarity=-0.023 Sum_probs=142.1
Q ss_pred eEEEEEcc-CCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccE--EEEee-------------CCCcEEEEecCC-C
Q 048511 7 KIHLYRGQ-RTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISIL--LVSSS-------------QDKVIRIWKLAL-R 69 (351)
Q Consensus 7 ~i~vw~~~-~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~--l~t~~-------------~dg~i~iwd~~~-~ 69 (351)
.|.+|++. + +++..+.....+ +.+.+++|+ +++++ ++++. .++++.+|++.. +
T Consensus 61 ~v~~~~~~~~-g~~~~~~~~~~~-g~~~~~~~s--------pdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g 130 (365)
T 1jof_A 61 KWSSFAVKSP-TEIVHEASHPIG-GHPRANDAD--------TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETG 130 (365)
T ss_dssp EEEEEEEEET-TEEEEEEEEECC-SSGGGGCTT--------SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTC
T ss_pred eEEEEEECCC-CCEEEeeEeecC-CCCccEEEC--------CCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCC
Confidence 79999997 5 654333232211 335668888 88884 55653 689999999974 4
Q ss_pred cccceeec---ccccceeeeEeeecCCeEEecC-CceeEEEEEe-----------cc--ccccceEEEEecCCCCCCCCC
Q 048511 70 GSSANTQS---TYRKEVISLASYIEGPVLVAGS-SSYQVSVESL-----------LI--GHEDWVYSVQWEPPSTAPSDG 132 (351)
Q Consensus 70 ~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~-----------~~--~h~~~v~~l~~~p~~~~~~~~ 132 (351)
+....... ........++++|+|+.+++++ ....+.++.. +. .|...+..++|+ +++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~s------pdg 204 (365)
T 1jof_A 131 KLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH------PTG 204 (365)
T ss_dssp CEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC------TTS
T ss_pred cCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEEC------CCC
Confidence 33222221 1235678899999999877653 2334443332 11 134568889999 788
Q ss_pred cccCCCceeEEeec-CCeEEEEeccCCCcceEE---EEEeccc--ccccc------ceEEEE-EcCCCCEEEEEeeCC--
Q 048511 133 VSCQQPSSILSASM-DKTMMIWQPEKTTGIWMN---VVTVGEL--SHSAL------GFYGGH-WSPDGRSILAHGYGG-- 197 (351)
Q Consensus 133 ~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~---~~~~~~~--~~~~~------~i~~i~-~~~~~~~l~~~~~dg-- 197 (351)
++ +++++. ++.|.+|++....+.... .+..... .++.. .+..++ |+|+|++|+++..+.
T Consensus 205 ~~------l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~ 278 (365)
T 1jof_A 205 NY------LYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF 278 (365)
T ss_dssp SE------EEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST
T ss_pred CE------EEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCC
Confidence 87 777664 789999987643244322 1221100 11121 478999 999999988776543
Q ss_pred ----eEEEEEcc-cCcccCccccc-ccccccccEEEEEeec---CCCEEEEEeCC-CcEEEEcCCCc
Q 048511 198 ----AFHLWRNV-GVDIDNWQPQK-VPSGHFAAVMDISWSR---SSDYLLSVSHD-QTTRVFAPWKN 254 (351)
Q Consensus 198 ----~i~~~d~~-~~~~~~~~~~~-~~~~~~~~v~~v~~sp---~~~~l~s~~~d-g~i~vwd~~~~ 254 (351)
.|.+|++. +++. ..+. ....+...+..++|+| +|++|++++.+ +.|.+|++...
T Consensus 279 ~~~~~i~v~~~~~~g~~---~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 279 ELQGYIAGFKLRDCGSI---EKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TSCCEEEEEEECTTSCE---EEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCeEEEEEECCCCCE---EEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999996 4321 1111 1222444567789999 89999988764 89999998654
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.67 E-value=2.5e-14 Score=133.84 Aligned_cols=264 Identities=10% Similarity=-0.017 Sum_probs=159.8
Q ss_pred CCCceEEEEEccCCCceEEEEeeeecCCcee---------EEEeeCCcccCCCCCccE-EEEeeC-CCcEEEEecC--C-
Q 048511 3 GLDNKIHLYRGQRTGKFVRACELKGHTDWIR---------SLDFSLPVCTSGEAISIL-LVSSSQ-DKVIRIWKLA--L- 68 (351)
Q Consensus 3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~---------~l~~~~~~~~~~~~~~~~-l~t~~~-dg~i~iwd~~--~- 68 (351)
+.++...||.....++ ...+..|...+. ...|+ .+ |+++. |+.++. +..|.+|++. .
T Consensus 44 ~~~~~~~l~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~----~S--PDg~~~la~~~~~~~~l~~~~~~~~g~ 114 (662)
T 3azo_A 44 AEAGRATLVRRRADGA---EESALPAPWNVRNRVFEYSGFPWAGV----PR--PAGGPLLVFTHFGDQRLYAFEPDAPGG 114 (662)
T ss_dssp TTTTEEEEEEECTTSC---EEESSCTTCCBCCCGGGTCCCCEEEE----CC--SSSSCEEEEEBTTTCCEEEECTTSTTC
T ss_pred ccCCcEEEEEECCCCC---cceeCCCCccccccccccCCccceee----ee--cCCCeEEEEEECCCCeEEEEcCCCCCC
Confidence 4577889998654243 345556665555 45454 11 67877 665543 4556666654 2
Q ss_pred Ccccceeecc----cccceeeeEeeecCCeEEecCCc----------eeEEEEEe-------------cc-ccccceEEE
Q 048511 69 RGSSANTQST----YRKEVISLASYIEGPVLVAGSSS----------YQVSVESL-------------LI-GHEDWVYSV 120 (351)
Q Consensus 69 ~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~~~-------------~~-~h~~~v~~l 120 (351)
+. ...+... .......++|+|+|+.|+....+ ..+.++.. +. .+...+..+
T Consensus 115 ~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 193 (662)
T 3azo_A 115 AV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGP 193 (662)
T ss_dssp CC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCC
T ss_pred CC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCc
Confidence 32 2222211 23456789999999998876654 34444432 22 344567778
Q ss_pred EecCCCCCCCCCcccCCCceeEEeecCC--------eEEEEecc-CCCcc--eEEEEEeccccccccceEEEEEcCCCCE
Q 048511 121 QWEPPSTAPSDGVSCQQPSSILSASMDK--------TMMIWQPE-KTTGI--WMNVVTVGELSHSALGFYGGHWSPDGRS 189 (351)
Q Consensus 121 ~~~p~~~~~~~~~~~~~~~~l~s~~~d~--------~i~iwd~~-~~~~~--~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 189 (351)
+|+ |||+. |+.++.++ .|.+||+. + +. ....+. ..+...+..++|+|+|++
T Consensus 194 ~~S------pDG~~------la~~~~~~~~~~~~~~~i~~~d~~~~--g~~~~~~~l~----~~~~~~~~~~~~spdg~l 255 (662)
T 3azo_A 194 RLS------PDGRQ------AVWLAWDHPRMPWEGTELKTARVTED--GRFADTRTLL----GGPEEAIAQAEWAPDGSL 255 (662)
T ss_dssp EEC------TTSSE------EEEEEECTTCCTTTCEEEEEEEECTT--SCEEEEEEEE----EETTBCEEEEEECTTSCE
T ss_pred eEC------CCCCE------EEEEECCCCCCCCCCcEEEEEEECCC--CcccccEEeC----CCCCceEcceEECCCCeE
Confidence 899 79998 88887653 79999998 4 41 222222 134567899999999998
Q ss_pred EEEEeeCC--eEEEEEcccCcccCccccccccccccc--------EEEEEeecCCCEEEEEeCCCcEEEEcC--CCcccc
Q 048511 190 ILAHGYGG--AFHLWRNVGVDIDNWQPQKVPSGHFAA--------VMDISWSRSSDYLLSVSHDQTTRVFAP--WKNVAS 257 (351)
Q Consensus 190 l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~--------v~~v~~sp~~~~l~s~~~dg~i~vwd~--~~~~~~ 257 (351)
++++..++ .|.+||+.+++. ......+... +..++|+|+++++++++. +.++||.+ ..+.
T Consensus 256 ~~~~~~~~~~~l~~~~~~~~~~-----~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-- 327 (662)
T 3azo_A 256 IVATDRTGWWNLHRVDPATGAA-----TQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-- 327 (662)
T ss_dssp EEEECTTSSCEEEEECTTTCCE-----EESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE--
T ss_pred EEEECCCCCeEEEEEECCCCce-----eecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc--
Confidence 88887788 666666655431 1122222111 467899999999999988 99999944 3332
Q ss_pred ccCccceEEeccccccccceeEE-EEeeeCCCcEEEEecCCCeEEEE--ecCchhhhce
Q 048511 258 LMGENSWHEVARPQVHGHDINCV-TIIQGKGNHRFVSGADEKVARVF--EAPLSFLKTL 313 (351)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~l~s~~~dg~v~vw--~~~~~~~~~~ 313 (351)
+..+..+...+..+ +++. +.-++++++.+....+| |+.+.....+
T Consensus 328 ---------~~~l~~~~~~~~~~~s~~~--~~~~~~~~~~~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 328 ---------LVDAAGPWTEWAATLTVSG--TRAVGVAASPRTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp ---------EEECCSSCCEEEEEEEEET--TEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred ---------EEEecCCCCeEEEEEecCC--CEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence 22334455556666 4443 44445556666554554 5544333333
No 170
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.67 E-value=7.7e-15 Score=128.14 Aligned_cols=258 Identities=11% Similarity=0.046 Sum_probs=160.3
Q ss_pred EccCCCceEEEEeeeecCCceeE-----EEeeCCcccCCCCCccEEEEeeC-CCc--EEEEecCCCcccceeecccccce
Q 048511 12 RGQRTGKFVRACELKGHTDWIRS-----LDFSLPVCTSGEAISILLVSSSQ-DKV--IRIWKLALRGSSANTQSTYRKEV 83 (351)
Q Consensus 12 ~~~~~~~~~~~~~~~~h~~~V~~-----l~~~~~~~~~~~~~~~~l~t~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~ 83 (351)
+..+ + ..+..+..|...... .+|+ |+|++|+.++. ++. |.+||+.+++..... .......
T Consensus 16 ~~~~-g--~~~~~lt~~~~~~~~~~~~~~~~S--------pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt-~~~~~~~ 83 (388)
T 3pe7_A 16 DAST-G--AQVTRLTPPDVTCHRNYFYQKCFT--------RDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT-EGRGDNT 83 (388)
T ss_dssp CTTT-C--CEEEECSCTTSCEECCCTTSCCBC--------TTSCEEEEEECTTSSCEEEEEETTTCEEEECC-CSSCBCS
T ss_pred cCCC-C--cceEEecCCcccccchhhcCccCC--------CCCCEEEEEEcCCCCceEEEEeCCCCceEEee-eCCCCCc
Confidence 4444 4 345567777766655 7899 88999998887 674 778888876544332 2222233
Q ss_pred eeeEeeecCCeEEecCCceeEEEEEec--------cccccceEEEE--ecCCCCCCCCCcccCCCceeEEe---------
Q 048511 84 ISLASYIEGPVLVAGSSSYQVSVESLL--------IGHEDWVYSVQ--WEPPSTAPSDGVSCQQPSSILSA--------- 144 (351)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~h~~~v~~l~--~~p~~~~~~~~~~~~~~~~l~s~--------- 144 (351)
....|+|+|+.|+....+..+..+..- ..+...+.... ++ +++.+ ++..
T Consensus 84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~------~dg~~------l~~~~~~~~~~~~ 151 (388)
T 3pe7_A 84 FGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVAN------SDCTK------LVGIEIRREDWVP 151 (388)
T ss_dssp SSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEEC------TTSSE------EEEEEEEGGGCCC
T ss_pred cceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeEC------CCCCe------eccccccCccccc
Confidence 467899999999887766555544322 22333333333 35 67776 6532
Q ss_pred -------------ecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC-CCCEEEEEeeC------CeEEEEEc
Q 048511 145 -------------SMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP-DGRSILAHGYG------GAFHLWRN 204 (351)
Q Consensus 145 -------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d------g~i~~~d~ 204 (351)
..+..|.+||+.+ ++..... .+...+..++|+| +++.|+....+ ..|.++|+
T Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~d~~~--g~~~~l~------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~ 223 (388)
T 3pe7_A 152 LTDWKKFHEFYFTKPCCRLMRVDLKT--GESTVIL------QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINE 223 (388)
T ss_dssp CCSHHHHHHHGGGCCCEEEEEEETTT--CCEEEEE------EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEET
T ss_pred ccccchhhhhhccCCcceEEEEECCC--CceEEee------cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeC
Confidence 2346799999988 5433222 3345688999999 99988877753 37888887
Q ss_pred ccCcccCccccccccccc--ccEEEEEeecCCCEEEEEeC-CC----cEEEEcCCCccccccCccceEEecccccccc--
Q 048511 205 VGVDIDNWQPQKVPSGHF--AAVMDISWSRSSDYLLSVSH-DQ----TTRVFAPWKNVASLMGENSWHEVARPQVHGH-- 275 (351)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~--~~v~~v~~sp~~~~l~s~~~-dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-- 275 (351)
.+.. ...+..+. ..+....|+|||+.|+..+. ++ .|++||+.+++. ..+.....+..
T Consensus 224 ~~~~------~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~--------~~l~~~~~~~~~~ 289 (388)
T 3pe7_A 224 DGTN------MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN--------RQLTSMPACSHLM 289 (388)
T ss_dssp TSCC------CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE--------EEEEEECCEEEEE
T ss_pred CCCc------eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce--------EEEEcCCCceeee
Confidence 6643 23333333 35778899999998765443 22 399999988762 12222222111
Q ss_pred -ceeEEEEeeeCCCcEEEEe---------cCCCeEEEEecCchhhhceeecc
Q 048511 276 -DINCVTIIQGKGNHRFVSG---------ADEKVARVFEAPLSFLKTLNHAT 317 (351)
Q Consensus 276 -~i~~~~~~~~~~~~~l~s~---------~~dg~v~vw~~~~~~~~~~~~~~ 317 (351)
....++|+| |++.|+.. ..+..|++||+.+..+..+..+.
T Consensus 290 ~~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~ 339 (388)
T 3pe7_A 290 SNYDGSLMVG--DGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHD 339 (388)
T ss_dssp ECTTSSEEEE--EECCC------------CCCCEEEEEETTTTEEEEEEECC
T ss_pred ecCCCCeEcc--CCCcceeEeeeccccccCCCCEEEEEeccCCceEEecccc
Confidence 122347999 88877743 55679999999865555555443
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.66 E-value=1.2e-14 Score=136.07 Aligned_cols=250 Identities=10% Similarity=0.059 Sum_probs=161.5
Q ss_pred EeeeecCCceeEEEeeCCcccCCCCCccEEEEe--eCCCcEEEEecCCCcccceeeccccccee---------eeEee--
Q 048511 23 CELKGHTDWIRSLDFSLPVCTSGEAISILLVSS--SQDKVIRIWKLALRGSSANTQSTYRKEVI---------SLASY-- 89 (351)
Q Consensus 23 ~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---------~~~~~-- 89 (351)
..+.+|...|..++|+ ++.-++++. +.++...||....+.....+... ...+. ...++
T Consensus 17 ~~~~~~~~~~~~~~~s--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~S 87 (662)
T 3azo_A 17 ALVASRSGRPACVGAV--------GDEVWWVAPRPAEAGRATLVRRRADGAEESALPA-PWNVRNRVFEYSGFPWAGVPR 87 (662)
T ss_dssp HHHHHTCSCCEEEEEE--------TTEEEEEEEETTTTTEEEEEEECTTSCEEESSCT-TCCBCCCGGGTCCCCEEEECC
T ss_pred HHHhhcCCccceeEEc--------CCeEEEEecCcccCCcEEEEEECCCCCcceeCCC-CccccccccccCCccceeeee
Confidence 3466789999999999 666666766 56889999996444333222221 11222 44454
Q ss_pred ecCCe-EEecCC-ceeEEEEE----------eccc-----cccceEEEEecCCCCCCCCCcccCCCceeEEeecC-----
Q 048511 90 IEGPV-LVAGSS-SYQVSVES----------LLIG-----HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD----- 147 (351)
Q Consensus 90 ~~~~~-l~~~~~-~~~~~~~~----------~~~~-----h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d----- 147 (351)
|+|+. ++.... +..+..+. .+.. |...+..++|+ +|++. |++++.+
T Consensus 88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~s------pDg~~------l~~~~~~~~~~~ 155 (662)
T 3azo_A 88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLL------PERGE------VWCMAEEFTGEG 155 (662)
T ss_dssp SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEE------TTTTE------EEEEEEEECSSS
T ss_pred cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEEC------CCCCE------EEEEEecccCCC
Confidence 88887 665432 33333322 1223 55678899999 79998 9988877
Q ss_pred -----CeEEEEeccCCC----cceEEEEEecccc-ccccceEEEEEcCCCCEEEEEeeCC--------eEEEEEcc-cCc
Q 048511 148 -----KTMMIWQPEKTT----GIWMNVVTVGELS-HSALGFYGGHWSPDGRSILAHGYGG--------AFHLWRNV-GVD 208 (351)
Q Consensus 148 -----~~i~iwd~~~~~----~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg--------~i~~~d~~-~~~ 208 (351)
..|++||+.... +. ...+ . .+...+..++|+|||++|+.++.++ .|++||+. ++.
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~-~~~l-----~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~ 229 (662)
T 3azo_A 156 PSDVRRFLAAVPLDGSAAADRSA-VREL-----SDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR 229 (662)
T ss_dssp TTCEEEEEEEEETTSTTTTCGGG-SEES-----SCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC
T ss_pred CCCceeEEEEEECCCCccccCCc-eeEE-----EecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc
Confidence 589999987611 11 1111 1 2334677899999999999887653 79999998 441
Q ss_pred ccCcccccccccccccEEEEEeecCCCEEEEEeCCC--cEEEEcCCCccccccCccceEEecccccccc--------cee
Q 048511 209 IDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQ--TTRVFAPWKNVASLMGENSWHEVARPQVHGH--------DIN 278 (351)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--------~i~ 278 (351)
.. ........+...+..+.|+|||++++++..++ .|.+||+.+++. ..+.. .+.. .+.
T Consensus 230 ~~--~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~--------~~l~~--~~~~~~~p~w~~~~~ 297 (662)
T 3azo_A 230 FA--DTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAA--------TQLCR--REEEFAGPLWTPGMR 297 (662)
T ss_dssp EE--EEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCE--------EESSC--CSSBSSCCCCSTTCC
T ss_pred cc--ccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCce--------eeccc--ccccccCccccccCc
Confidence 10 11222334567899999999999888888888 666677655431 12211 1111 156
Q ss_pred EEEEeeeCCCcEEEEecCCCeEEEE--ecCchhhhcee
Q 048511 279 CVTIIQGKGNHRFVSGADEKVARVF--EAPLSFLKTLN 314 (351)
Q Consensus 279 ~~~~~~~~~~~~l~s~~~dg~v~vw--~~~~~~~~~~~ 314 (351)
.++|++ ++.++++++. +.++|| |+.+..++.+.
T Consensus 298 ~~~~~~--~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~ 332 (662)
T 3azo_A 298 WFAPLA--NGLIAVVHGK-GAAVLGILDPESGELVDAA 332 (662)
T ss_dssp SEEECT--TSCEEEEEBS-SSCEEEEEETTTTEEEECC
T ss_pred eEeEeC--CCEEEEEEEc-CccEEEEEECCCCcEEEec
Confidence 788888 8999999998 999999 55544445444
No 172
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.65 E-value=1.2e-14 Score=137.62 Aligned_cols=225 Identities=12% Similarity=0.090 Sum_probs=141.2
Q ss_pred CceEEEEEccCCCceEEEEeeeecCCc-----eeEEEeeCCcccCCCCCccEEEEeeCC---------CcEEEEecCCCc
Q 048511 5 DNKIHLYRGQRTGKFVRACELKGHTDW-----IRSLDFSLPVCTSGEAISILLVSSSQD---------KVIRIWKLALRG 70 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~~~~~~h~~~-----V~~l~~~~~~~~~~~~~~~~l~t~~~d---------g~i~iwd~~~~~ 70 (351)
||+|++||+.+ ++. ...+.+|... ...+.|+ |+|++|+.++.+ +.+.+||+.+++
T Consensus 35 ~~~i~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~S--------pdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~ 103 (740)
T 4a5s_A 35 ENNILVFNAEY-GNS--SVFLENSTFDEFGHSINDYSIS--------PDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ 103 (740)
T ss_dssp TTEEEEEETTT-CCE--EEEECTTTTTTCCSCCCEEEEC--------TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE
T ss_pred CCcEEEEECCC-Cce--EEEEechhhhhhcccccceEEC--------CCCCEEEEEECCeeeEEEccceEEEEEECCCCc
Confidence 88999999998 643 3456666543 2447889 899999998876 556799999876
Q ss_pred ccceeecccccceeeeEeeecCCeEEecCCceeEEEEEe---------ccccccce-----------------EEEEecC
Q 048511 71 SSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL---------LIGHEDWV-----------------YSVQWEP 124 (351)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------~~~h~~~v-----------------~~l~~~p 124 (351)
.... ..........+|+|+|+.|+.... ..+.++.. ..++...+ ..+.|+
T Consensus 104 ~~~l--~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wS- 179 (740)
T 4a5s_A 104 LITE--ERIPNNTQWVTWSPVGHKLAYVWN-NDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWS- 179 (740)
T ss_dssp ECCS--SCCCTTEEEEEECSSTTCEEEEET-TEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEEC-
T ss_pred EEEc--ccCCCcceeeEECCCCCEEEEEEC-CeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEEC-
Confidence 5432 222346789999999998887643 34433321 11222222 248899
Q ss_pred CCCCCCCCcccCCCceeEEeecCC------------------------------------eEEEEeccC---CCcceEEE
Q 048511 125 PSTAPSDGVSCQQPSSILSASMDK------------------------------------TMMIWQPEK---TTGIWMNV 165 (351)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~s~~~d~------------------------------------~i~iwd~~~---~~~~~~~~ 165 (351)
|||+. ||.++.|. .|++||+.+ .+......
T Consensus 180 -----pDg~~------la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~ 248 (740)
T 4a5s_A 180 -----PNGTF------LAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQ 248 (740)
T ss_dssp -----TTSSE------EEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEE
T ss_pred -----CCCCE------EEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEE
Confidence 79998 88876443 366677664 31101112
Q ss_pred EEe-ccccccccceEEEEEcCCCCEEEEEeeC----CeEEEEEcccCcccC-ccccccc--ccccccEE-----EEEeec
Q 048511 166 VTV-GELSHSALGFYGGHWSPDGRSILAHGYG----GAFHLWRNVGVDIDN-WQPQKVP--SGHFAAVM-----DISWSR 232 (351)
Q Consensus 166 ~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~-~~~~~~~--~~~~~~v~-----~v~~sp 232 (351)
+.. .....+...+..++|+||++.++..... ..|.+||+.+++... ...+..+ ..|...|. ...|+|
T Consensus 249 l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp 328 (740)
T 4a5s_A 249 ITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL 328 (740)
T ss_dssp ECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT
T ss_pred ecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcC
Confidence 210 0001255678899999999976655432 379999998874000 0112222 34555544 688999
Q ss_pred CCCEEE-EEeC-C--CcEEEEcCCCcc
Q 048511 233 SSDYLL-SVSH-D--QTTRVFAPWKNV 255 (351)
Q Consensus 233 ~~~~l~-s~~~-d--g~i~vwd~~~~~ 255 (351)
||+.|+ ..+. + ..|++||...+.
T Consensus 329 DG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 329 DGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp TSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred CCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 999876 6654 3 468888887654
No 173
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.64 E-value=1.3e-13 Score=114.36 Aligned_cols=239 Identities=10% Similarity=-0.057 Sum_probs=163.6
Q ss_pred CCCCCceEEEEEccCCCceEEEEeeeecC-CceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccc
Q 048511 1 MGGLDNKIHLYRGQRTGKFVRACELKGHT-DWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTY 79 (351)
Q Consensus 1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~ 79 (351)
+++.|+.|++||.++ + +.+..+..+. ..+.++.+. ++|++|+ +.++.|..||. +++.+.....
T Consensus 10 ~~~~~~~v~~~d~~t-G--~~~w~~~~~~~~~~~~~~~~--------pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~-- 73 (276)
T 3no2_A 10 GGSGWNKIAIINKDT-K--EIVWEYPLEKGWECNSVAAT--------KAGEILF--SYSKGAKMITR-DGRELWNIAA-- 73 (276)
T ss_dssp ECTTCSEEEEEETTT-T--EEEEEEECCTTCCCCEEEEC--------TTSCEEE--ECBSEEEEECT-TSCEEEEEEC--
T ss_pred eeCCCCEEEEEECCC-C--eEEEEeCCCccCCCcCeEEC--------CCCCEEE--eCCCCEEEECC-CCCEEEEEcC--
Confidence 367899999999988 7 4567777665 478999999 8899888 34778999998 6655443321
Q ss_pred ccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec-CCeEEEEeccCC
Q 048511 80 RKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM-DKTMMIWQPEKT 158 (351)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~ 158 (351)
+....+.++.+. +++++ +++.+. ++.|..+|. .
T Consensus 74 --------------------------------~~~~~~~~~~~~------~dG~~------lv~~~~~~~~v~~vd~-~- 107 (276)
T 3no2_A 74 --------------------------------PAGCEMQTARIL------PDGNA------LVAWCGHPSTILEVNM-K- 107 (276)
T ss_dssp --------------------------------CTTCEEEEEEEC------TTSCE------EEEEESTTEEEEEECT-T-
T ss_pred --------------------------------CCCccccccEEC------CCCCE------EEEecCCCCEEEEEeC-C-
Confidence 122357788888 78888 888777 777777775 3
Q ss_pred CcceEEEEEeccc-cccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEE
Q 048511 159 TGIWMNVVTVGEL-SHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYL 237 (351)
Q Consensus 159 ~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l 237 (351)
++.+..+.+... ..+......+++.++|+++++...++.|..||.. ++ .+.++... ..+.++...++++++
T Consensus 108 -Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~-----~~w~~~~~-~~~~~~~~~~~g~~~ 179 (276)
T 3no2_A 108 -GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ-----LLNSVKLS-GTPFSSAFLDNGDCL 179 (276)
T ss_dssp -SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC-----EEEEEECS-SCCCEEEECTTSCEE
T ss_pred -CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC-----EEEEEECC-CCccceeEcCCCCEE
Confidence 666666654321 1222345566789999999999999999999998 53 34444432 345677888999999
Q ss_pred EEEeCCCcEEEEcCCCccccccCccceEEecc-ccc-cccceeEEEEeeeCCCcEEEEec--C--------CCeEEEEec
Q 048511 238 LSVSHDQTTRVFAPWKNVASLMGENSWHEVAR-PQV-HGHDINCVTIIQGKGNHRFVSGA--D--------EKVARVFEA 305 (351)
Q Consensus 238 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~-~~~~i~~~~~~~~~~~~~l~s~~--~--------dg~v~vw~~ 305 (351)
++++.++.|..+|..+++ ..|+.-.. ... .-..+..++..+ ++.++++.. . ++.+.-.+.
T Consensus 180 v~~~~~~~v~~~d~~tG~------~~w~~~~~~~~~~~l~~~~~~~~~~--~G~i~v~~~~g~~~~~~~~~~~~~~~~~~ 251 (276)
T 3no2_A 180 VACGDAHCFVQLNLESNR------IVRRVNANDIEGVQLFFVAQLFPLQ--NGGLYICNWQGHDREAGKGKHPQLVEIDS 251 (276)
T ss_dssp EECBTTSEEEEECTTTCC------EEEEEEGGGSBSCCCSEEEEEEECT--TSCEEEEEECTTCTTGGGSCCCSEEEECT
T ss_pred EEeCCCCeEEEEeCcCCc------EEEEecCCCCCCccccccccceEcC--CCCEEEEeccCccccccccCCceEEEECC
Confidence 998888899999998887 24443221 111 122367777877 888888773 1 333333444
Q ss_pred Cchhhhceeecc
Q 048511 306 PLSFLKTLNHAT 317 (351)
Q Consensus 306 ~~~~~~~~~~~~ 317 (351)
+++.+-++....
T Consensus 252 ~g~~~W~~~~~~ 263 (276)
T 3no2_A 252 EGKVVWQLNDKV 263 (276)
T ss_dssp TSBEEEEECCTT
T ss_pred CCCEEEEecCcc
Confidence 577766665544
No 174
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.64 E-value=1.2e-13 Score=115.32 Aligned_cols=215 Identities=10% Similarity=0.125 Sum_probs=145.5
Q ss_pred CCCceEEEEEccCCCceEEEEeee------ecCCceeEEEeeCCcccCCCCCccEEEEeeC-CCcEEEEecCCCccccee
Q 048511 3 GLDNKIHLYRGQRTGKFVRACELK------GHTDWIRSLDFSLPVCTSGEAISILLVSSSQ-DKVIRIWKLALRGSSANT 75 (351)
Q Consensus 3 ~~dg~i~vw~~~~~~~~~~~~~~~------~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~ 75 (351)
..++.|++||... .. +..+. +|...+.++++. + +++.++++... ++.|.+|| .++......
T Consensus 48 ~~~~~i~~~d~~g-~~---~~~~~~~~~~~~~~~~p~~i~~~----~---~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~ 115 (286)
T 1q7f_A 48 TNNHRIQIFDKEG-RF---KFQFGECGKRDSQLLYPNRVAVV----R---NSGDIIVTERSPTHQIQIYN-QYGQFVRKF 115 (286)
T ss_dssp GGGTEEEEECTTS-CE---EEEECCBSSSTTCBSSEEEEEEE----T---TTTEEEEEECGGGCEEEEEC-TTSCEEEEE
T ss_pred CCCCEEEEECCCC-cE---EEEecccCCCcccccCceEEEEE----c---CCCeEEEEcCCCCCEEEEEC-CCCcEEEEe
Confidence 4578899999775 32 22332 344678899994 1 56666666543 88999999 445444333
Q ss_pred ecccccceeeeEeeecCCeEEecCCceeEEEEE-------ecc--ccccceEEEEecCCCCCCCCCcccCCCceeEEeec
Q 048511 76 QSTYRKEVISLASYIEGPVLVAGSSSYQVSVES-------LLI--GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM 146 (351)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~--~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~ 146 (351)
.......+..+++.++|+++++......+..+. .+. ++...+..++++ +++++ +++...
T Consensus 116 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~------~~g~l------~v~~~~ 183 (286)
T 1q7f_A 116 GATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVN------DKQEI------FISDNR 183 (286)
T ss_dssp CTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEEC------SSSEE------EEEEGG
T ss_pred cCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEEC------CCCCE------EEEECC
Confidence 333334677899999998777765555454332 121 344568899999 78888 888888
Q ss_pred CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCC-eEEEEEcccCcccCccccccccccc--c
Q 048511 147 DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGG-AFHLWRNVGVDIDNWQPQKVPSGHF--A 223 (351)
Q Consensus 147 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~~~--~ 223 (351)
++.|++||.. +..+..+.. ..+...+..++++++++++++...++ .|.+||.... .+..+..+. .
T Consensus 184 ~~~i~~~~~~---g~~~~~~~~---~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~------~~~~~~~~~~~~ 251 (286)
T 1q7f_A 184 AHCVKVFNYE---GQYLRQIGG---EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ------LISALESKVKHA 251 (286)
T ss_dssp GTEEEEEETT---CCEEEEESC---TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC------EEEEEEESSCCS
T ss_pred CCEEEEEcCC---CCEEEEEcc---CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC------EEEEEcccCCCC
Confidence 9999999975 444444321 12235688999999998888877775 9999996542 233333332 3
Q ss_pred cEEEEEeecCCCEEEEEeCCCcEEEEcCCCc
Q 048511 224 AVMDISWSRSSDYLLSVSHDQTTRVFAPWKN 254 (351)
Q Consensus 224 ~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~ 254 (351)
.+.+++++|+|+++++ +.|+.|++|++...
T Consensus 252 ~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 252 QCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred cceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 4789999999987776 57999999998543
No 175
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.63 E-value=7.9e-14 Score=120.50 Aligned_cols=242 Identities=7% Similarity=-0.041 Sum_probs=147.4
Q ss_pred CCceEEEEEccCCCceEEEEeeee------cCCceeEEEeeCCcccCCCCCccEEEEeeC--CCcEEEEecCCCcccce-
Q 048511 4 LDNKIHLYRGQRTGKFVRACELKG------HTDWIRSLDFSLPVCTSGEAISILLVSSSQ--DKVIRIWKLALRGSSAN- 74 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~~~~~~~~~------h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~--dg~i~iwd~~~~~~~~~- 74 (351)
.+++|.+||..+ .+ .+.++.. +......++++ +++++|+++.. +++|.+||+.+.+.+..
T Consensus 79 ~~~~v~v~d~~t-~~--~~~~i~~~~~~~~~g~~p~~i~~s--------pdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~ 147 (361)
T 2oiz_A 79 RSDVVEVWDADK-LT--FEKEISLPPKRVQGLNYDGLFRQT--------TDGKFIVLQNASPATSIGIVDVAKGDYVEDV 147 (361)
T ss_dssp EEEEEEEEETTT-CC--EEEEEEECTTBCCBCCCGGGEEEC--------TTSSEEEEEEESSSEEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEECcC-Cc--EEEEEEcCccccccCCCcceEEEC--------CCCCEEEEECCCCCCeEEEEECCCCcEEEEE
Confidence 477899999987 53 3344432 23456789999 88999998864 58999999998866544
Q ss_pred eecccc--------cceeeeEeeecCCeEEecCC-ceeEE-EEE---eccccccceEEEEecCCCCCCCCCcccCCCcee
Q 048511 75 TQSTYR--------KEVISLASYIEGPVLVAGSS-SYQVS-VES---LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSI 141 (351)
Q Consensus 75 ~~~~~~--------~~~~~~~~~~~~~~l~~~~~-~~~~~-~~~---~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l 141 (351)
+..... ....-+..+++|.++..... ++.+. ... .+..+..++ .+.+. +++.. +
T Consensus 148 i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~------~~g~~------~ 214 (361)
T 2oiz_A 148 TAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPA------LDKDK------A 214 (361)
T ss_dssp GGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCE------ECSSE------E
T ss_pred ecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEec------ccCCE------E
Confidence 322110 00122334444444433211 11111 000 011111111 11122 34444 6
Q ss_pred EEeecCCeEEEEeccCCCcceEEEEEecc-----ccccccceEEEEEcCCCCEEEEEee-----------CCeEEEEEcc
Q 048511 142 LSASMDKTMMIWQPEKTTGIWMNVVTVGE-----LSHSALGFYGGHWSPDGRSILAHGY-----------GGAFHLWRNV 205 (351)
Q Consensus 142 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~i~~i~~~~~~~~l~~~~~-----------dg~i~~~d~~ 205 (351)
+..+.++.|.++|+..........+.+.. ..........++|+|+++.++++.. .+.|.+||+.
T Consensus 215 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~ 294 (361)
T 2oiz_A 215 HFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTK 294 (361)
T ss_dssp EEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETT
T ss_pred EEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECC
Confidence 66778899999999763222222222110 0000111123689999988887654 3589999998
Q ss_pred cCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCc--cccccCccceEEeccccccccceeEEEEe
Q 048511 206 GVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKN--VASLMGENSWHEVARPQVHGHDINCVTII 283 (351)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 283 (351)
+. +.+.++..+. +.+++|+|+|++|++++. +.|.+||..++ + .+..+..++.....++++
T Consensus 295 t~-----~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~----------~~~~i~~~G~~P~~~~~~ 356 (361)
T 2oiz_A 295 TK-----QRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPK----------LLRTIEGAAEASLQVQFH 356 (361)
T ss_dssp TT-----EEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCE----------EEEEETTSCSSEEEEEEC
T ss_pred CC-----cEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcce----------eeEEeccCCCCcEEEEec
Confidence 87 4577777666 899999999999998886 99999999887 5 555544566678889999
Q ss_pred eeCCCc
Q 048511 284 QGKGNH 289 (351)
Q Consensus 284 ~~~~~~ 289 (351)
| +|.
T Consensus 357 p--~G~ 360 (361)
T 2oiz_A 357 P--VGG 360 (361)
T ss_dssp C--CSC
T ss_pred C--CCC
Confidence 8 664
No 176
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.62 E-value=2.1e-14 Score=125.63 Aligned_cols=250 Identities=9% Similarity=-0.010 Sum_probs=148.6
Q ss_pred CceEEEEEccCCCceEEEEeeeecCCc-eeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc--c
Q 048511 5 DNKIHLYRGQRTGKFVRACELKGHTDW-IRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR--K 81 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~~~~~~h~~~-V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~--~ 81 (351)
+..|.+||+.+ ++.. .+..+... ...+.|+ +++++|+.++.++.|.+||+.+++.......... .
T Consensus 59 ~~~l~~~d~~~-~~~~---~l~~~~~~~~~~~~~s--------pdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 126 (396)
T 3c5m_A 59 NRNYYLLNLET-QQAV---QLTEGKGDNTFGGFIS--------TDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKG 126 (396)
T ss_dssp SCEEEEEETTT-TEEE---ECCCSSCBCTTTCEEC--------TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEE
T ss_pred CceEEEEECCC-CcEE---EeecCCCCccccceEC--------CCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCC
Confidence 34688888887 6432 23333333 3347899 8899999999999999999987754332221110 0
Q ss_pred ceee----------------eEeeecCCeEEec-----CCceeEEEEE-------eccccccceEEEEecCCCCCCC-CC
Q 048511 82 EVIS----------------LASYIEGPVLVAG-----SSSYQVSVES-------LLIGHEDWVYSVQWEPPSTAPS-DG 132 (351)
Q Consensus 82 ~~~~----------------~~~~~~~~~l~~~-----~~~~~~~~~~-------~~~~h~~~v~~l~~~p~~~~~~-~~ 132 (351)
.... ..++|+++.++.. .....+.++. .+..+...+..+.|+ + ++
T Consensus 127 ~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~s------p~dg 200 (396)
T 3c5m_A 127 YGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYR------PFDD 200 (396)
T ss_dssp EEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEE------TTEE
T ss_pred CCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceEC------CCCC
Confidence 0001 2345555544432 2223333222 122355678889999 6 67
Q ss_pred cccCCCceeEEeecC------CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-----CeEEE
Q 048511 133 VSCQQPSSILSASMD------KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-----GAFHL 201 (351)
Q Consensus 133 ~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~~ 201 (351)
.. |+..+.+ ..|.+||+.. +... .+. . ......+..++|+|+++.|+.++.+ +.|++
T Consensus 201 ~~------l~~~~~~~~~~~~~~l~~~d~~~--~~~~-~l~--~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (396)
T 3c5m_A 201 ST------VGFCHEGPHDLVDARMWLVNEDG--SNVR-KIK--E-HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYK 268 (396)
T ss_dssp EE------EEEEECSCSSSCSCCCEEEETTS--CCCE-ESS--C-CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEE
T ss_pred CE------EEEEecCCCCCCCceEEEEECCC--Ccee-Eee--c-cCCCccccceEECCCCCEEEEEecCCCCccceEEE
Confidence 76 6665543 3588888765 3221 111 1 0112357889999999988777654 45999
Q ss_pred EEcccCcccCcccccccccccccEEEEEeec-CCCEEEEEe----------------CCCcEEEEcCCCccccccCccce
Q 048511 202 WRNVGVDIDNWQPQKVPSGHFAAVMDISWSR-SSDYLLSVS----------------HDQTTRVFAPWKNVASLMGENSW 264 (351)
Q Consensus 202 ~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~s~~----------------~dg~i~vwd~~~~~~~~~~~~~~ 264 (351)
||+.+++. ..+..+. . .. +.|+| +|+++++++ .+..|++||+.++.. .
T Consensus 269 ~d~~~g~~---~~l~~~~---~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-----~-- 333 (396)
T 3c5m_A 269 ANPETLEN---EEVMVMP---P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-----Q-- 333 (396)
T ss_dssp ECTTTCCE---EEEEECC---S-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-----C--
T ss_pred EECCCCCe---EEeeeCC---C-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-----E--
Confidence 99987642 1122222 1 23 88999 999888754 347899999977652 1
Q ss_pred EEecccccccc-----------ceeEEEEeeeCCCcEEEEec-CCCeEEEEec
Q 048511 265 HEVARPQVHGH-----------DINCVTIIQGKGNHRFVSGA-DEKVARVFEA 305 (351)
Q Consensus 265 ~~~~~~~~~~~-----------~i~~~~~~~~~~~~~l~s~~-~dg~v~vw~~ 305 (351)
.+. .+.. .+..++|+| ++..|+..+ .++...||.+
T Consensus 334 -~l~---~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 334 -KLC---KHSTSWDVLDGDRQITHPHPSFTP--NDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp -EEE---ECCCCCCCBTTBSSTTCCCCEECT--TSSEEEEEECTTSSCEEEEE
T ss_pred -Ecc---CCCCccccccccccCCCCCceEcc--CCCeEEEEecCCCCceEEEE
Confidence 111 1211 256678999 888777665 4566556654
No 177
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.61 E-value=3.3e-13 Score=111.58 Aligned_cols=222 Identities=6% Similarity=-0.022 Sum_probs=148.0
Q ss_pred CCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccc
Q 048511 3 GLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKE 82 (351)
Q Consensus 3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 82 (351)
..++.|.+|+... +... .....+...+.+|++. ++++++++.. ++.|.+||........ .
T Consensus 43 ~~~~~i~~~~~~~-~~~~--~~~~~~~~~p~~i~~~--------~~g~l~v~~~-~~~i~~~d~~~~~~~~-~------- 102 (270)
T 1rwi_B 43 GMYGRVVKLATGS-TGTT--VLPFNGLYQPQGLAVD--------GAGTVYVTDF-NNRVVTLAAGSNNQTV-L------- 102 (270)
T ss_dssp SSSCEEEEECC------E--ECCCCSCCSCCCEEEC--------TTCCEEEEET-TTEEEEECTTCSCCEE-C-------
T ss_pred CCCCcEEEecCCC-cccc--eEeeCCcCCcceeEEC--------CCCCEEEEcC-CCEEEEEeCCCceEee-e-------
Confidence 4567888888765 3211 1112334568889999 7787666655 8899999976543210 0
Q ss_pred eeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcce
Q 048511 83 VISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIW 162 (351)
Q Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 162 (351)
.......+..+++. +++++ +++...++.|.+|+... ...
T Consensus 103 ---------------------------~~~~~~~p~~i~~~------~~g~l------~v~~~~~~~i~~~~~~~--~~~ 141 (270)
T 1rwi_B 103 ---------------------------PFDGLNYPEGLAVD------TQGAV------YVADRGNNRVVKLAAGS--KTQ 141 (270)
T ss_dssp ---------------------------CCCSCSSEEEEEEC------TTCCE------EEEEGGGTEEEEECTTC--CSC
T ss_pred ---------------------------ecCCcCCCcceEEC------CCCCE------EEEECCCCEEEEEECCC--cee
Confidence 01122457899999 67777 88777888999997654 222
Q ss_pred EEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC
Q 048511 163 MNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH 242 (351)
Q Consensus 163 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~ 242 (351)
... . ......+..++++++++.+++...++.|.+||...... ......+...+.+++++++|.++++...
T Consensus 142 ~~~-~----~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~p~~i~~d~~g~l~v~~~~ 211 (270)
T 1rwi_B 142 TVL-P----FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ-----VVLPFTDITAPWGIAVDEAGTVYVTEHN 211 (270)
T ss_dssp EEC-C----CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE-----EECCCSSCCSEEEEEECTTCCEEEEETT
T ss_pred Eee-c----cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce-----EeecccCCCCceEEEECCCCCEEEEECC
Confidence 111 1 12223567899999998777666788999999876531 1122223356889999999987777777
Q ss_pred CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511 243 DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 243 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 307 (351)
++.|.+||...... .. ....+...+.++++++ ++.++++...++.|+++++..
T Consensus 212 ~~~v~~~~~~~~~~---------~~-~~~~~~~~p~~i~~~~--~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 212 TNQVVKLLAGSTTS---------TV-LPFTGLNTPLAVAVDS--DRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp TSCEEEECTTCSCC---------EE-CCCCSCSCEEEEEECT--TCCEEEEEGGGTEEEEECCCG
T ss_pred CCcEEEEcCCCCcc---------ee-eccCCCCCceeEEECC--CCCEEEEECCCCEEEEEcCCC
Confidence 89999999865431 11 1112234588999998 888999999999999999874
No 178
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.61 E-value=1.2e-13 Score=116.12 Aligned_cols=221 Identities=10% Similarity=-0.008 Sum_probs=141.4
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK 81 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~ 81 (351)
+..++.|..|+..+ + ...+..+...+.+++++ ++++++++...++.|.+||..+++.......
T Consensus 46 ~~~~~~i~~~~~~~-~----~~~~~~~~~~~~~l~~~--------~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~---- 108 (296)
T 3e5z_A 46 DVRQNRTWAWSDDG-Q----LSPEMHPSHHQNGHCLN--------KQGHLIACSHGLRRLERQREPGGEWESIADS---- 108 (296)
T ss_dssp EGGGTEEEEEETTS-C----EEEEESSCSSEEEEEEC--------TTCCEEEEETTTTEEEEECSTTCCEEEEECE----
T ss_pred eCCCCEEEEEECCC-C----eEEEECCCCCcceeeEC--------CCCcEEEEecCCCeEEEEcCCCCcEEEEeec----
Confidence 34678899999987 4 23455577789999999 8888888777778999999876643211100
Q ss_pred ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEE----eec-----------
Q 048511 82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILS----ASM----------- 146 (351)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s----~~~----------- 146 (351)
........+..+++. ++|++ +++ |+.
T Consensus 109 ---------------------------~~~~~~~~~~~i~~d------~~G~l------~vtd~~~g~~~~~~~~~~~~~ 149 (296)
T 3e5z_A 109 ---------------------------FEGKKLNSPNDVCLA------PDGSL------WFSDPTYGIDKPEEGYGGEME 149 (296)
T ss_dssp ---------------------------ETTEECCCCCCEEEC------TTSCE------EEEECSHHHHCGGGSSCCCCC
T ss_pred ---------------------------cCCCCCCCCCCEEEC------CCCCE------EEECCcccccccccccccccc
Confidence 000112345678888 67777 776 321
Q ss_pred --CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcc-cCcccCcccccccccccc
Q 048511 147 --DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNV-GVDIDNWQPQKVPSGHFA 223 (351)
Q Consensus 147 --d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~-~~~~~~~~~~~~~~~~~~ 223 (351)
.+.|..++.. +.. ..+. ........++|+|+++.+++...++.|.+|++. .+... .....+..+..
T Consensus 150 ~~~~~l~~~~~~---g~~-~~~~-----~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~--~~~~~~~~~~~ 218 (296)
T 3e5z_A 150 LPGRWVFRLAPD---GTL-SAPI-----RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETE--YQGVHFTVEPG 218 (296)
T ss_dssp SSSCEEEEECTT---SCE-EEEE-----CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEE--EEEEEECCSSS
T ss_pred CCCcEEEEECCC---CCE-EEee-----cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCc--CCCeEeeCCCC
Confidence 2345445443 222 2222 334456889999999988777778999999996 33210 00111123455
Q ss_pred cEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEe-eeCCCcEEEEecCCCeEEE
Q 048511 224 AVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTII-QGKGNHRFVSGADEKVARV 302 (351)
Q Consensus 224 ~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~l~s~~~dg~v~v 302 (351)
.+.+++++++|+++++. ++.|.+||.. ++ .+..+..+.. +++++|. + +++.|.+++.++. .-
T Consensus 219 ~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~----------~~~~~~~~~~-~~~~~f~~~--d~~~L~v~t~~~l-~~ 281 (296)
T 3e5z_A 219 KTDGLRVDAGGLIWASA--GDGVHVLTPD-GD----------ELGRVLTPQT-TSNLCFGGP--EGRTLYMTVSTEF-WS 281 (296)
T ss_dssp CCCSEEEBTTSCEEEEE--TTEEEEECTT-SC----------EEEEEECSSC-CCEEEEEST--TSCEEEEEETTEE-EE
T ss_pred CCCeEEECCCCCEEEEc--CCeEEEECCC-CC----------EEEEEECCCC-ceeEEEECC--CCCEEEEEcCCeE-EE
Confidence 67789999999877665 7899999986 33 2333334445 8999995 5 7777877777643 33
Q ss_pred EecC
Q 048511 303 FEAP 306 (351)
Q Consensus 303 w~~~ 306 (351)
++..
T Consensus 282 ~~~~ 285 (296)
T 3e5z_A 282 IETN 285 (296)
T ss_dssp EECS
T ss_pred EEcc
Confidence 3444
No 179
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.60 E-value=6.9e-13 Score=113.29 Aligned_cols=233 Identities=9% Similarity=0.005 Sum_probs=153.6
Q ss_pred CCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccc
Q 048511 3 GLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKE 82 (351)
Q Consensus 3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 82 (351)
+.++.++.|. + .....+..+...+.+++|+ +++++++++..++.|.+||..+++....
T Consensus 24 ~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~--------~~g~l~~~~~~~~~i~~~d~~~~~~~~~-------- 81 (333)
T 2dg1_A 24 ISESELQTIT----A--EPWLEISKKGLQLEGLNFD--------RQGQLFLLDVFEGNIFKINPETKEIKRP-------- 81 (333)
T ss_dssp CCGGGSCEEE----C--EEEEEEESSCCCEEEEEEC--------TTSCEEEEETTTCEEEEECTTTCCEEEE--------
T ss_pred eecccCcccc----c--ceeEEEeccCccccCcEEC--------CCCCEEEEECCCCEEEEEeCCCCcEEEE--------
Confidence 3466777782 2 3345666677788999999 7888888888899999999876543210
Q ss_pred eeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC----CeEEEEeccCC
Q 048511 83 VISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD----KTMMIWQPEKT 158 (351)
Q Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~ 158 (351)
...+...+.+++++ +++++ +++...+ +.|.+||...
T Consensus 82 ---------------------------~~~~~~~~~~i~~~------~dg~l------~v~~~~~~~~~~~i~~~d~~~- 121 (333)
T 2dg1_A 82 ---------------------------FVSHKANPAAIKIH------KDGRL------FVCYLGDFKSTGGIFAATENG- 121 (333)
T ss_dssp ---------------------------EECSSSSEEEEEEC------TTSCE------EEEECTTSSSCCEEEEECTTS-
T ss_pred ---------------------------eeCCCCCcceEEEC------CCCcE------EEEeCCCCCCCceEEEEeCCC-
Confidence 11244679999999 78877 7776666 6899999887
Q ss_pred CcceEEEEEeccccccccceEEEEEcCCCCEEEEEee------CCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511 159 TGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY------GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR 232 (351)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 232 (351)
+.....+. . ......+..++++|+++++++... .+.|..+|..+++ ...+......+..++|+|
T Consensus 122 -~~~~~~~~--~-~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~i~~~~ 191 (333)
T 2dg1_A 122 -DNLQDIIE--D-LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT------VTPIIQNISVANGIALST 191 (333)
T ss_dssp -CSCEEEEC--S-SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC------EEEEEEEESSEEEEEECT
T ss_pred -CEEEEEEc--c-CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE------EEEeecCCCcccceEECC
Confidence 43322221 0 123456899999999987776553 2556666655432 122222334578899999
Q ss_pred CCCEEE-EEeCCCcEEEEcCCCc-cccccCccce--EEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCch
Q 048511 233 SSDYLL-SVSHDQTTRVFAPWKN-VASLMGENSW--HEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLS 308 (351)
Q Consensus 233 ~~~~l~-s~~~dg~i~vwd~~~~-~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 308 (351)
++++|+ +.+.++.|.+||+... ... ..+ .....+..+ ..+..+++++ ++.++++...++.|.+|+.+++
T Consensus 192 dg~~l~v~~~~~~~i~~~d~~~~g~~~----~~~~~~~~~~~~~~-~~~~~i~~d~--~G~l~v~~~~~~~v~~~d~~g~ 264 (333)
T 2dg1_A 192 DEKVLWVTETTANRLHRIALEDDGVTI----QPFGATIPYYFTGH-EGPDSCCIDS--DDNLYVAMYGQGRVLVFNKRGY 264 (333)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSSSE----EEEEEEEEEECCSS-SEEEEEEEBT--TCCEEEEEETTTEEEEECTTSC
T ss_pred CCCEEEEEeCCCCeEEEEEecCCCcCc----ccccceEEEecCCC-CCCCceEECC--CCCEEEEEcCCCEEEEECCCCC
Confidence 998654 4456789999998642 200 001 011111122 3578899998 8888888888899999998776
Q ss_pred hhhcee
Q 048511 309 FLKTLN 314 (351)
Q Consensus 309 ~~~~~~ 314 (351)
.+..+.
T Consensus 265 ~~~~~~ 270 (333)
T 2dg1_A 265 PIGQIL 270 (333)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 655553
No 180
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.60 E-value=3.5e-13 Score=115.72 Aligned_cols=233 Identities=13% Similarity=0.077 Sum_probs=149.3
Q ss_pred CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCC---Cc--EEEEecCCCcccceeecc
Q 048511 4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQD---KV--IRIWKLALRGSSANTQST 78 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d---g~--i~iwd~~~~~~~~~~~~~ 78 (351)
.++.|.+||+.+ ++...+ ..+..+.|+ |+|++|+.++.+ +. |.+|++.+++.......
T Consensus 41 ~~~~l~~~d~~~-~~~~~l-------~~~~~~~~S--------pDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~- 103 (347)
T 2gop_A 41 YENTIVIENLKN-NARRFI-------ENATMPRIS--------PDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA- 103 (347)
T ss_dssp EEEEEEEEETTT-CCEEEE-------ESCEEEEEC--------TTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-
T ss_pred ccceEEEEeCCC-CceEEc-------ccCCCeEEC--------CCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-
Confidence 367899999988 654332 468899999 889999888754 33 77778876654333222
Q ss_pred cccceeeeEeeecCCeEEecCC---------------------------ceeEEEEEe--------ccccccceEEEEec
Q 048511 79 YRKEVISLASYIEGPVLVAGSS---------------------------SYQVSVESL--------LIGHEDWVYSVQWE 123 (351)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~---------------------------~~~~~~~~~--------~~~h~~~v~~l~~~ 123 (351)
.. +..+.|+|+|+.|+.... ...+.++.. +.. . .+..+.|+
T Consensus 104 -~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s 179 (347)
T 2gop_A 104 -KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH 179 (347)
T ss_dssp -SE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE
T ss_pred -CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC
Confidence 12 778899999998877542 123333221 111 2 56678899
Q ss_pred CCCCCCCCCcccCCCceeEEeecCC-------eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC
Q 048511 124 PPSTAPSDGVSCQQPSSILSASMDK-------TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196 (351)
Q Consensus 124 p~~~~~~~~~~~~~~~~l~s~~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 196 (351)
+++ + ++++..+. ...||.+.. +.... +. .+ ..+..+ +|+|+.|+.++.+
T Consensus 180 ------pdg-~------~~~~~~~~~~~~~~~~~~l~~~d~--~~~~~-l~-----~~-~~~~~~--spdg~~l~~~~~~ 235 (347)
T 2gop_A 180 ------RDK-I------VVNVPHREIIPQYFKFWDIYIWED--GKEEK-MF-----EK-VSFYAV--DSDGERILLYGKP 235 (347)
T ss_dssp ------TTE-E------EEEEECCCSSCCSSCCEEEEEEET--TEEEE-EE-----EE-ESEEEE--EECSSCEEEEECC
T ss_pred ------CCe-E------EEEEecccccccccccccEEEeCC--CceEE-ec-----cC-cceeeE--CCCCCEEEEEEcc
Confidence 788 7 88876542 445555543 44332 22 12 334444 9999988877744
Q ss_pred --------CeEEEEEcccCcccCcccccccccccccEEE-EEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEe
Q 048511 197 --------GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD-ISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEV 267 (351)
Q Consensus 197 --------g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~-v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 267 (351)
..|.+|| ++ ........+...+.. +.|+ ++ ++++++.++.++|| +.+++ ...+
T Consensus 236 ~~~~~~~~~~l~~~d--~~-----~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~--------~~~~ 297 (347)
T 2gop_A 236 EKKYMSEHNKLYIYD--GK-----EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE--------IKPI 297 (347)
T ss_dssp SSSCCCSSCEEEEEC--SS-----CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSS--------EEEE
T ss_pred ccCCccccceEEEEC--CC-----ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc--------eEEE
Confidence 4688888 43 223334456677886 8999 88 88999999999999 87432 1122
Q ss_pred ccccccccceeEEEEeeeCCCcEEEEecCCCeE-EEEecC
Q 048511 268 ARPQVHGHDINCVTIIQGKGNHRFVSGADEKVA-RVFEAP 306 (351)
Q Consensus 268 ~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v-~vw~~~ 306 (351)
..+...|.+++|++ .++++++.++.. .||.++
T Consensus 298 ---~~~~~~v~~~~~s~----~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 298 ---AKGRHWIMGFDVDE----IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp ---ECSSSEEEEEEESS----SEEEEEECSSSCCEEEEES
T ss_pred ---ecCCCeEEeeeeeC----cEEEEEcCCCChHHheEeC
Confidence 12355688888875 566676666654 777765
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.59 E-value=1.4e-12 Score=123.03 Aligned_cols=236 Identities=10% Similarity=0.000 Sum_probs=153.2
Q ss_pred cCCceeEEEeeCCcccCCCCCccEEEEeeCCC-----cEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCce
Q 048511 28 HTDWIRSLDFSLPVCTSGEAISILLVSSSQDK-----VIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSY 102 (351)
Q Consensus 28 h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 102 (351)
|...+..++|+ |+|++||.++.++ .|++||+.+++........ .....++|+|||+.|+.+..+.
T Consensus 123 ~~~~~~~~~~S--------PDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~--~~~~~~~wspDg~~l~~~~~~~ 192 (710)
T 2xdw_A 123 GTVALRGYAFS--------EDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQ 192 (710)
T ss_dssp SCEEEEEEEEC--------TTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCC
T ss_pred CCEEEEEEEEC--------CCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC--cccceEEEEeCCCEEEEEEECC
Confidence 44468899999 8899998776543 8999999988765432211 1245789999999888754432
Q ss_pred e----------------EEEEEe------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeec-----CCe
Q 048511 103 Q----------------VSVESL------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM-----DKT 149 (351)
Q Consensus 103 ~----------------~~~~~~------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~-----d~~ 149 (351)
. +..+.. ...|...+..+.|+ +|+++ |+.++. +..
T Consensus 193 ~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~S------pDg~~------l~~~~~~~~~~~~~ 260 (710)
T 2xdw_A 193 QDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELS------DDGRY------VLLSIREGCDPVNR 260 (710)
T ss_dssp CSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC------TTSCE------EEEEEECSSSSCCE
T ss_pred ccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEc------CCCCE------EEEEEEccCCCccE
Confidence 2 433321 11134457789999 78888 877765 578
Q ss_pred EEEEeccC------CCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC----CeEEEEEcccCcccCcccccccc
Q 048511 150 MMIWQPEK------TTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG----GAFHLWRNVGVDIDNWQPQKVPS 219 (351)
Q Consensus 150 i~iwd~~~------~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~~~~ 219 (351)
|.+||+.. ... ....+. .+...+.. .|+|+|..|+..+.. +.|.+||+.++... ....+.
T Consensus 261 l~~~d~~~~~~~~~~~~-~~~~l~-----~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~---~~~~l~ 330 (710)
T 2xdw_A 261 LWYCDLQQESNGITGIL-KWVKLI-----DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES---KWKVLV 330 (710)
T ss_dssp EEEEEGGGSSSSSCSSC-CCEEEE-----CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG---GCEEEE
T ss_pred EEEEECcccccccCCcc-ceEEee-----CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc---cceecc
Confidence 99999975 211 223333 23333333 478898887766653 36999999775321 123344
Q ss_pred cccc--cEEEEEeecCCCEEEEEeCCCc--EEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEE-E-
Q 048511 220 GHFA--AVMDISWSRSSDYLLSVSHDQT--TRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFV-S- 293 (351)
Q Consensus 220 ~~~~--~v~~v~~sp~~~~l~s~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-s- 293 (351)
.|.. .+..++|++++.++++...|+. |++||+.+++ .+..+..+...+..+++++ ++..++ +
T Consensus 331 ~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~----------~~~~l~~~~~~v~~~~~s~--d~~~l~~~~ 398 (710)
T 2xdw_A 331 PEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA----------LLKIFPLEVGSVVGYSGQK--KDTEIFYQF 398 (710)
T ss_dssp CCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC----------EEEEECCCSSEEEEEECCT--TCSEEEEEE
T ss_pred CCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC----------EEEecCCCCceEEEEecCC--CCCEEEEEE
Confidence 4433 6888999988888888888885 5566765554 2222334456688888888 665554 3
Q ss_pred --ecCCCeEEEEecCc
Q 048511 294 --GADEKVARVFEAPL 307 (351)
Q Consensus 294 --~~~dg~v~vw~~~~ 307 (351)
....+.|++||+..
T Consensus 399 ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 399 TSFLSPGIIYHCDLTK 414 (710)
T ss_dssp ECSSCCCEEEEEETTS
T ss_pred eCCCCCCEEEEEECCC
Confidence 23567999999873
No 182
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.58 E-value=4e-13 Score=114.64 Aligned_cols=215 Identities=10% Similarity=0.004 Sum_probs=151.2
Q ss_pred CceEEEEEccCCCceEEEEeee-ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCc-ccceee------
Q 048511 5 DNKIHLYRGQRTGKFVRACELK-GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRG-SSANTQ------ 76 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~-~~~~~~------ 76 (351)
+++|.+||..+ +++. ..+. ++-.....|+++ ++++++++...++.|++|+..... .+..+.
T Consensus 68 ~~~i~~~d~~~-g~~~--~~~~~~~~~~p~gia~d--------~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g 136 (329)
T 3fvz_A 68 EDTILVIDPNN-AEIL--QSSGKNLFYLPHGLSID--------TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPG 136 (329)
T ss_dssp SCCEEEECTTT-CCEE--EEECTTTCSSEEEEEEC--------TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCC
T ss_pred CCcEEEEECCC-CeEE--eccCCCccCCceEEEEC--------CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCC
Confidence 36899999987 6542 2332 455678999999 889988888889999999986542 222221
Q ss_pred --cccccceeeeEeee-cCCeEEecC-CceeEEEEE-------ecc----------ccccceEEEEecCCCCCCCC-Ccc
Q 048511 77 --STYRKEVISLASYI-EGPVLVAGS-SSYQVSVES-------LLI----------GHEDWVYSVQWEPPSTAPSD-GVS 134 (351)
Q Consensus 77 --~~~~~~~~~~~~~~-~~~~l~~~~-~~~~~~~~~-------~~~----------~h~~~v~~l~~~p~~~~~~~-~~~ 134 (351)
.........+++++ ++.++++.. ....+..+. .+. ++-.....++++ ++ +.+
T Consensus 137 ~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d------~~~g~l 210 (329)
T 3fvz_A 137 SDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALV------PHLDQL 210 (329)
T ss_dssp CSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEE------TTTTEE
T ss_pred CCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEE------CCCCEE
Confidence 11223577899999 777777764 466664433 121 122347899999 56 777
Q ss_pred cCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEE-------EeeCCeEEEEEcccC
Q 048511 135 CQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILA-------HGYGGAFHLWRNVGV 207 (351)
Q Consensus 135 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-------~~~dg~i~~~d~~~~ 207 (351)
+++...++.|++||..+ ++.+..+.. ..+...+..++++| +..+.+ ...+..|++||+.++
T Consensus 211 ------~v~d~~~~~I~~~~~~~--G~~~~~~~~---~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g 278 (329)
T 3fvz_A 211 ------CVADRENGRIQCFKTDT--KEFVREIKH---ASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSG 278 (329)
T ss_dssp ------EEEETTTTEEEEEETTT--CCEEEEECC---TTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTC
T ss_pred ------EEEECCCCEEEEEECCC--CcEEEEEec---cccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCC
Confidence 88888899999999987 776666542 23455688999999 333333 233458999998876
Q ss_pred cccCccccccc---ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCC
Q 048511 208 DIDNWQPQKVP---SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWK 253 (351)
Q Consensus 208 ~~~~~~~~~~~---~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~ 253 (351)
+ .+..+ .++...+.+|+++|+|.++++...++.|++|++..
T Consensus 279 ~-----~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 279 E-----IIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp C-----EEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred e-----EEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 3 34444 35667789999999998888888899999999743
No 183
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.55 E-value=2.5e-13 Score=118.73 Aligned_cols=254 Identities=11% Similarity=0.006 Sum_probs=152.2
Q ss_pred EEccCCCceEEEEeeeecCCc-----eeEEEeeCCcccCCCCCccEEEEeeCC---CcEEEEecCCCcccceeecccccc
Q 048511 11 YRGQRTGKFVRACELKGHTDW-----IRSLDFSLPVCTSGEAISILLVSSSQD---KVIRIWKLALRGSSANTQSTYRKE 82 (351)
Q Consensus 11 w~~~~~~~~~~~~~~~~h~~~-----V~~l~~~~~~~~~~~~~~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~~~~~~ 82 (351)
.|..+ ++ .+..+..+... +..++|+ |+|++|+..... ..|.+||+.+++..... ......
T Consensus 15 ~d~~~-g~--~~~~l~~~~~~~~~~~~~~~~~S--------pdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~-~~~~~~ 82 (396)
T 3c5m_A 15 VDSDT-QV--KVTRLTPTDIICHRNYFYQKCFT--------QDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT-EGKGDN 82 (396)
T ss_dssp ECTTT-CC--EEEECSCTTSCEECCCTTSCCBC--------TTSCEEEEEECTTSSCEEEEEETTTTEEEECC-CSSCBC
T ss_pred ecCCC-Cc--ceEEEecCCCCccceeeecCcCC--------CCCCEEEEEEecCCCceEEEEECCCCcEEEee-cCCCCc
Confidence 35666 53 33455444333 7788999 889998776543 36888898876543221 111111
Q ss_pred eeeeEeeecCCeEEecCCceeEEEEEec--------cccccceEE-------------------EEecCCCCCCCCCccc
Q 048511 83 VISLASYIEGPVLVAGSSSYQVSVESLL--------IGHEDWVYS-------------------VQWEPPSTAPSDGVSC 135 (351)
Q Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~h~~~v~~-------------------l~~~p~~~~~~~~~~~ 135 (351)
...+.|+|+|+.|+....+..+.++..- ..+...... +.|+ ++++.
T Consensus 83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~s------pdg~~- 155 (396)
T 3c5m_A 83 TFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQ------PLTSW- 155 (396)
T ss_dssp TTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCC------CCCSH-
T ss_pred cccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccC------CCCcc-
Confidence 2237789999988776655555444321 112222222 2344 55655
Q ss_pred CCCceeEEe-----ecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC-CCCEEEEEeeC------CeEEEEE
Q 048511 136 QQPSSILSA-----SMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP-DGRSILAHGYG------GAFHLWR 203 (351)
Q Consensus 136 ~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d------g~i~~~d 203 (351)
++.+ ..+..|.+||+.. +...... .+...+..+.|+| +++.|+..+.+ ..|.+||
T Consensus 156 -----~~~~~~~~~~~~~~l~~~d~~~--g~~~~~~------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d 222 (396)
T 3c5m_A 156 -----EKFAEFYHTNPTCRLIKVDIET--GELEVIH------QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVN 222 (396)
T ss_dssp -----HHHHHHHHTCCCEEEEEEETTT--CCEEEEE------EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEE
T ss_pred -----eeeeeeccCCCcceEEEEECCC--CcEEeec------cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEE
Confidence 5544 3566899999987 5443322 2345688999999 78877666543 3688888
Q ss_pred cccCcccCcccccccccc--cccEEEEEeecCCCEEEEEeCC-----CcEEEEcCCCccccccCccceEEeccccccccc
Q 048511 204 NVGVDIDNWQPQKVPSGH--FAAVMDISWSRSSDYLLSVSHD-----QTTRVFAPWKNVASLMGENSWHEVARPQVHGHD 276 (351)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (351)
+.++. ...+..+ ...+..++|+|+|++|+..+.+ +.|++||+.+++. ..+.....
T Consensus 223 ~~~~~------~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~--------~~l~~~~~---- 284 (396)
T 3c5m_A 223 EDGSN------VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN--------EEVMVMPP---- 284 (396)
T ss_dssp TTSCC------CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE--------EEEEECCS----
T ss_pred CCCCc------eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe--------EEeeeCCC----
Confidence 86643 1222222 2357889999999987776543 4599999987652 12222211
Q ss_pred eeEEEEeeeCCCcEEEEec----------------CCCeEEEEecCchhhhceeec
Q 048511 277 INCVTIIQGKGNHRFVSGA----------------DEKVARVFEAPLSFLKTLNHA 316 (351)
Q Consensus 277 i~~~~~~~~~~~~~l~s~~----------------~dg~v~vw~~~~~~~~~~~~~ 316 (351)
.. +.|+| .++.+++.++ .+..|++||+.+..+..+..+
T Consensus 285 ~~-~~~s~-~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 338 (396)
T 3c5m_A 285 CS-HLMSN-FDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKH 338 (396)
T ss_dssp EE-EEEEC-SSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEEC
T ss_pred CC-CCccC-CCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCC
Confidence 22 77775 3677777654 357899999875444555443
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.55 E-value=1.5e-12 Score=109.33 Aligned_cols=217 Identities=11% Similarity=0.045 Sum_probs=146.8
Q ss_pred EeeeecCCceeEEEeeCCcccCCCCCcc-EEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCc
Q 048511 23 CELKGHTDWIRSLDFSLPVCTSGEAISI-LLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSS 101 (351)
Q Consensus 23 ~~~~~h~~~V~~l~~~~~~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 101 (351)
..+..+.....+++|+ ++++ +++++..++.|..|+..++ ..
T Consensus 21 ~~l~~~~~~~eg~~~d--------~~g~~l~~~~~~~~~i~~~~~~~~--~~---------------------------- 62 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYV--------PARSAVIFSDVRQNRTWAWSDDGQ--LS---------------------------- 62 (296)
T ss_dssp EEEECCCSSEEEEEEE--------GGGTEEEEEEGGGTEEEEEETTSC--EE----------------------------
T ss_pred EEEecCCccccCCeEe--------CCCCEEEEEeCCCCEEEEEECCCC--eE----------------------------
Confidence 3444566678899999 7887 7888888999999998765 21
Q ss_pred eeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEE
Q 048511 102 YQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGG 181 (351)
Q Consensus 102 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i 181 (351)
.+..+...+.+++++ +++++ +++...++.|.+||..+ +........ ........+..+
T Consensus 63 -------~~~~~~~~~~~l~~~------~dg~l------~v~~~~~~~i~~~d~~~--g~~~~~~~~-~~~~~~~~~~~i 120 (296)
T 3e5z_A 63 -------PEMHPSHHQNGHCLN------KQGHL------IACSHGLRRLERQREPG--GEWESIADS-FEGKKLNSPNDV 120 (296)
T ss_dssp -------EEESSCSSEEEEEEC------TTCCE------EEEETTTTEEEEECSTT--CCEEEEECE-ETTEECCCCCCE
T ss_pred -------EEECCCCCcceeeEC------CCCcE------EEEecCCCeEEEEcCCC--CcEEEEeec-cCCCCCCCCCCE
Confidence 112245668899999 78887 87777778999999977 543322211 011112346789
Q ss_pred EEcCCCCEEEEE----ee-------------CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCC
Q 048511 182 HWSPDGRSILAH----GY-------------GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQ 244 (351)
Q Consensus 182 ~~~~~~~~l~~~----~~-------------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg 244 (351)
+++|+|+++++. .. .+.|..++.. ++ +..+..+......++|+|+++.|++.+.++
T Consensus 121 ~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~------~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~ 193 (296)
T 3e5z_A 121 CLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT------LSAPIRDRVKPNGLAFLPSGNLLVSDTGDN 193 (296)
T ss_dssp EECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC------EEEEECCCSSEEEEEECTTSCEEEEETTTT
T ss_pred EECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC------EEEeecCCCCCccEEECCCCCEEEEeCCCC
Confidence 999999988873 21 3456666554 22 223334556678999999999987777789
Q ss_pred cEEEEcCC-CccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhceeecc
Q 048511 245 TTRVFAPW-KNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLNHAT 317 (351)
Q Consensus 245 ~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~ 317 (351)
.|++||+. .+... .....+ ..+...+..+++++ +++++++. ++.|.+|+..++.+..+....
T Consensus 194 ~i~~~~~~~~g~~~----~~~~~~---~~~~~~p~~i~~d~--~G~l~v~~--~~~v~~~~~~g~~~~~~~~~~ 256 (296)
T 3e5z_A 194 ATHRYCLNARGETE----YQGVHF---TVEPGKTDGLRVDA--GGLIWASA--GDGVHVLTPDGDELGRVLTPQ 256 (296)
T ss_dssp EEEEEEECSSSCEE----EEEEEE---CCSSSCCCSEEEBT--TSCEEEEE--TTEEEEECTTSCEEEEEECSS
T ss_pred eEEEEEECCCCcCc----CCCeEe---eCCCCCCCeEEECC--CCCEEEEc--CCeEEEECCCCCEEEEEECCC
Confidence 99999987 33210 001122 22444577899998 88877776 789999999887776665443
No 185
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.54 E-value=1.8e-12 Score=121.96 Aligned_cols=242 Identities=9% Similarity=-0.042 Sum_probs=152.1
Q ss_pred ecCCceeEEEeeCCcccCCCCCccEEE-----EeeCCCcEEEEecCCCccc-ceeecccccceeeeEeeecCCeEEecCC
Q 048511 27 GHTDWIRSLDFSLPVCTSGEAISILLV-----SSSQDKVIRIWKLALRGSS-ANTQSTYRKEVISLASYIEGPVLVAGSS 100 (351)
Q Consensus 27 ~h~~~V~~l~~~~~~~~~~~~~~~~l~-----t~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 100 (351)
+|...+..++|+ |+|++|| .|+.+.+|++||+.+++.. ..... ......++|+|+|+.|+....
T Consensus 118 ~~~~~~~~~~~S--------PDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~~~~~~~~wspDg~~l~~~~~ 187 (695)
T 2bkl_A 118 DGTVSLGTWAVS--------WDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE--GGKYATPKWTPDSKGFYYEWL 187 (695)
T ss_dssp SSCEEEEEEEEC--------TTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS--CCTTCCCEECTTSSEEEEEEC
T ss_pred CCCEEEEEEEEC--------CCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC--cccccceEEecCCCEEEEEEe
Confidence 455678999999 8899998 4455678999999988764 21111 111267899999998887654
Q ss_pred cee-------------EEEEEe------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCC----eEE
Q 048511 101 SYQ-------------VSVESL------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDK----TMM 151 (351)
Q Consensus 101 ~~~-------------~~~~~~------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~----~i~ 151 (351)
+.. +..+.. ...|...+..+.|+ +||++ |+.++.++ .|.
T Consensus 188 d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S------pDG~~------l~~~~~~~~~~~~l~ 255 (695)
T 2bkl_A 188 PTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS------RDGKY------LFVYILRGWSENDVY 255 (695)
T ss_dssp CCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC------TTSCC------EEEEEEETTTEEEEE
T ss_pred cCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC------CCCCE------EEEEEeCCCCceEEE
Confidence 322 433321 12244578899999 78988 88877766 667
Q ss_pred EEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe---eCCeEEEEEcccCcccCcccccccccc--cccEE
Q 048511 152 IWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG---YGGAFHLWRNVGVDIDNWQPQKVPSGH--FAAVM 226 (351)
Q Consensus 152 iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~~~--~~~v~ 226 (351)
+||... +... .+. .+...+....+ +++.+++.+. .++.|.+||+.++.... ...+..+ ...+.
T Consensus 256 ~~~~~~--~~~~-~l~-----~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~---~~~l~~~~~~~~l~ 323 (695)
T 2bkl_A 256 WKRPGE--KDFR-LLV-----KGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARAS---WKEIVPEDSSASLL 323 (695)
T ss_dssp EECTTC--SSCE-EEE-----ECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGG---CEEEECCCSSCEEE
T ss_pred EEcCCC--CceE-Eee-----cCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccC---CeEEecCCCCCeEE
Confidence 776544 4332 222 22334455556 5666444433 25889999997753211 1222222 44678
Q ss_pred EEEeecCCCEEEEEeCCCcEEEEcCCC-ccccccCccceEEecccccc-ccceeEEEEeeeCCCcEEE----EecCCCeE
Q 048511 227 DISWSRSSDYLLSVSHDQTTRVFAPWK-NVASLMGENSWHEVARPQVH-GHDINCVTIIQGKGNHRFV----SGADEKVA 300 (351)
Q Consensus 227 ~v~~sp~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~----s~~~dg~v 300 (351)
.++|+ ++.++++...|+..+||.+.. +. ....+..+ ...+..+++++ ++..++ +....+.|
T Consensus 324 ~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~----------~~~~l~~~~~~~v~~~~~s~--d~~~l~~~~ss~~~P~~v 390 (695)
T 2bkl_A 324 SVSIV-GGHLSLEYLKDATSEVRVATLKGK----------PVRTVQLPGVGAASNLMGLE--DLDDAYYVFTSFTTPRQI 390 (695)
T ss_dssp EEEEE-TTEEEEEEEETTEEEEEEEETTCC----------EEEECCCSSSSEECCCBSCT--TCSEEEEEEEETTEEEEE
T ss_pred EEEEE-CCEEEEEEEECCEEEEEEEeCCCC----------eeEEecCCCCeEEEEeecCC--CCCEEEEEEcCCCCCCEE
Confidence 88888 667888888999888886642 22 12222233 44577888888 676666 44456889
Q ss_pred EEEecCchhhhceee
Q 048511 301 RVFEAPLSFLKTLNH 315 (351)
Q Consensus 301 ~vw~~~~~~~~~~~~ 315 (351)
++||+.......+..
T Consensus 391 ~~~d~~~g~~~~l~~ 405 (695)
T 2bkl_A 391 YKTSVSTGKSELWAK 405 (695)
T ss_dssp EEEETTTCCEEEEEE
T ss_pred EEEECCCCcEEEEec
Confidence 999987433444443
No 186
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.54 E-value=2.9e-11 Score=101.23 Aligned_cols=239 Identities=9% Similarity=0.011 Sum_probs=161.3
Q ss_pred eeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCcee
Q 048511 24 ELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQ 103 (351)
Q Consensus 24 ~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 103 (351)
.+..+...+.++++. +++.++++...++.|.+||.. +.............+..+++.++|.++++....+.
T Consensus 9 ~~~~~~~~~~~i~~d--------~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~ 79 (299)
T 2z2n_A 9 NLTNQDTGPYGITVS--------DKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANK 79 (299)
T ss_dssp ECCSSSCCEEEEEEC--------TTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTE
T ss_pred cCCCcCCCccceEEC--------CCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCe
Confidence 344456789999999 788887776668899999987 43322111112346778888899888777554443
Q ss_pred EEEEE------e--ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc
Q 048511 104 VSVES------L--LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA 175 (351)
Q Consensus 104 ~~~~~------~--~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 175 (351)
+..+. . +......+.++++. +++.+ +++...++.|..||. . +.... +. .....
T Consensus 80 i~~~~~~g~~~~~~~~~~~~~~~~i~~~------~~g~l------~v~~~~~~~i~~~d~-~--g~~~~-~~---~~~~~ 140 (299)
T 2z2n_A 80 IGRITKKGIIKEYTLPNPDSAPYGITEG------PNGDI------WFTEMNGNRIGRITD-D--GKIRE-YE---LPNKG 140 (299)
T ss_dssp EEEECTTSCEEEEECSSTTCCEEEEEEC------TTSCE------EEEETTTTEEEEECT-T--CCEEE-EE---CSSTT
T ss_pred EEEECCCCcEEEEeCCCcCCCceeeEEC------CCCCE------EEEecCCceEEEECC-C--CCEEE-ec---CCCCC
Confidence 33221 1 11234468889998 67777 777777889999998 4 43322 21 11234
Q ss_pred cceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511 176 LGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 176 ~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
..+..++++++++.+++...++.|..||. +++. . ...+......+.+++++++++++++...++.|.+||. ++.
T Consensus 141 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~---~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~ 214 (299)
T 2z2n_A 141 SYPSFITLGSDNALWFTENQNNAIGRITE-SGDI---T-EFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE 214 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE---E-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred CCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcE---E-EeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc
Confidence 46889999999987777666789999998 5431 1 1112233456889999999997777767889999998 544
Q ss_pred ccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511 256 ASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 307 (351)
. ..+ ....+...+.++++++ ++.++++...++.|.+|+..+
T Consensus 215 ~--------~~~-~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~d~~g 255 (299)
T 2z2n_A 215 I--------TEF-KIPTPNARPHAITAGA--GIDLWFTEWGANKIGRLTSNN 255 (299)
T ss_dssp E--------EEE-ECSSTTCCEEEEEECS--TTCEEEEETTTTEEEEEETTT
T ss_pred E--------EEE-ECCCCCCCceeEEECC--CCCEEEeccCCceEEEECCCC
Confidence 1 111 1223345688999998 788777777889999999864
No 187
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.53 E-value=6.8e-11 Score=98.97 Aligned_cols=251 Identities=10% Similarity=0.010 Sum_probs=162.8
Q ss_pred CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeec-ccccce
Q 048511 5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQS-TYRKEV 83 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~ 83 (351)
++.|.+||... ++.. ..+..+...+.++++. +++.++++...++.|..|+.. +. ...... .....+
T Consensus 35 ~~~v~~~d~~~--~~~~-~~~~~~~~~~~~i~~~--------~~g~l~v~~~~~~~i~~~~~~-g~-~~~~~~~~~~~~~ 101 (299)
T 2z2n_A 35 ANMISCINLDG--KITE-YPLPTPDAKVMCLTIS--------SDGEVWFTENAANKIGRITKK-GI-IKEYTLPNPDSAP 101 (299)
T ss_dssp TTEEEEECTTC--CEEE-EECSSTTCCEEEEEEC--------TTSCEEEEETTTTEEEEECTT-SC-EEEEECSSTTCCE
T ss_pred CCcEEEEcCCC--CeEE-ecCCcccCceeeEEEC--------CCCCEEEeCCCCCeEEEECCC-Cc-EEEEeCCCcCCCc
Confidence 56788888763 3322 2233345678999999 788888877778889999976 22 222211 123456
Q ss_pred eeeEeeecCCeEEecCCceeEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEec
Q 048511 84 ISLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQP 155 (351)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 155 (351)
..+++.++|.++++......+..+.. ...+...+..+++. +++.+ +++...++.|..||.
T Consensus 102 ~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~------~~g~l------~v~~~~~~~i~~~~~ 169 (299)
T 2z2n_A 102 YGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLG------SDNAL------WFTENQNNAIGRITE 169 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEEC------TTSCE------EEEETTTTEEEEECT
T ss_pred eeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEc------CCCCE------EEEeCCCCEEEEEcC
Confidence 78888888887776544443332221 12234567889998 67776 777667789999998
Q ss_pred cCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCC
Q 048511 156 EKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSD 235 (351)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 235 (351)
+ +.... +. .......+..++++++++.+++...++.|.+||. ++.. . ...+..+...+.+++++++|+
T Consensus 170 -~--g~~~~-~~---~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~---~-~~~~~~~~~~~~~i~~~~~g~ 237 (299)
T 2z2n_A 170 -S--GDITE-FK---IPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI---T-EFKIPTPNARPHAITAGAGID 237 (299)
T ss_dssp -T--CCEEE-EE---CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE---E-EEECSSTTCCEEEEEECSTTC
T ss_pred -C--CcEEE-ee---CCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE---E-EEECCCCCCCceeEEECCCCC
Confidence 5 44332 21 1123446789999999987666666889999998 5432 1 112233456789999999998
Q ss_pred EEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 236 YLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 236 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
++++...++.|.+||. ++. +..+. ...+...+.++++ + ++.++++.. .+.+..++..
T Consensus 238 l~v~~~~~~~i~~~d~-~g~--------~~~~~-~~~~~~~~~~i~~-~--~g~l~v~~~-~~~l~~~~~~ 294 (299)
T 2z2n_A 238 LWFTEWGANKIGRLTS-NNI--------IEEYP-IQIKSAEPHGICF-D--GETIWFAME-CDKIGKLTLI 294 (299)
T ss_dssp EEEEETTTTEEEEEET-TTE--------EEEEE-CSSSSCCEEEEEE-C--SSCEEEEET-TTEEEEEEEC
T ss_pred EEEeccCCceEEEECC-CCc--------eEEEe-CCCCCCccceEEe-c--CCCEEEEec-CCcEEEEEcC
Confidence 7776667889999998 332 11221 1233456889999 7 788777766 4556666655
No 188
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.51 E-value=2.1e-11 Score=104.03 Aligned_cols=221 Identities=10% Similarity=0.031 Sum_probs=136.7
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCC----CcEEEEecCCCcccceeec
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQD----KVIRIWKLALRGSSANTQS 77 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d----g~i~iwd~~~~~~~~~~~~ 77 (351)
+..++.|.+||.++ ++...+ ...+...+.+++++ ++++++++...+ +.|.+||..++.......
T Consensus 62 ~~~~~~i~~~d~~~-~~~~~~--~~~~~~~~~~i~~~--------~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~- 129 (333)
T 2dg1_A 62 DVFEGNIFKINPET-KEIKRP--FVSHKANPAAIKIH--------KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE- 129 (333)
T ss_dssp ETTTCEEEEECTTT-CCEEEE--EECSSSSEEEEEEC--------TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC-
T ss_pred ECCCCEEEEEeCCC-CcEEEE--eeCCCCCcceEEEC--------CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEc-
Confidence 35678899999887 654332 22456789999999 788888877666 689999987654321110
Q ss_pred ccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec------CCeEE
Q 048511 78 TYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM------DKTMM 151 (351)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~------d~~i~ 151 (351)
...+...+.++.+. +++++ +++... .+.|.
T Consensus 130 --------------------------------~~~~~~~~~~i~~d------~~g~l------~v~~~~~~~~~~~~~l~ 165 (333)
T 2dg1_A 130 --------------------------------DLSTAYCIDDMVFD------SKGGF------YFTDFRGYSTNPLGGVY 165 (333)
T ss_dssp --------------------------------SSSSCCCEEEEEEC------TTSCE------EEEECCCBTTBCCEEEE
T ss_pred --------------------------------cCccCCcccceEEC------CCCCE------EEEeccccccCCCceEE
Confidence 01133568899999 67776 666543 24565
Q ss_pred EEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEE-eeCCeEEEEEcccC-cc-cCc--ccccccccccccEE
Q 048511 152 IWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAH-GYGGAFHLWRNVGV-DI-DNW--QPQKVPSGHFAAVM 226 (351)
Q Consensus 152 iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~~~d~~~~-~~-~~~--~~~~~~~~~~~~v~ 226 (351)
.+|... +.... +. .....+..++|+|+++.++.+ ..++.|.+||+.+. .. ..+ .....+.++ ..+.
T Consensus 166 ~~~~~~--~~~~~-~~-----~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~ 236 (333)
T 2dg1_A 166 YVSPDF--RTVTP-II-----QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPD 236 (333)
T ss_dssp EECTTS--CCEEE-EE-----EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEE
T ss_pred EEeCCC--CEEEE-ee-----cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCC
Confidence 666544 33322 21 122346889999999866555 45789999999642 10 000 000112222 4678
Q ss_pred EEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccc---ccccceeEEEEeeeCCCcEEEEecCC
Q 048511 227 DISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQ---VHGHDINCVTIIQGKGNHRFVSGADE 297 (351)
Q Consensus 227 ~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~s~~~d 297 (351)
.++++++|+++++...++.|.+||.. ++ ....+.... +|...+.+++|++ ++..|+.++.+
T Consensus 237 ~i~~d~~G~l~v~~~~~~~v~~~d~~-g~-------~~~~~~~~~~~~g~~~~~~~~~~~~--dg~~L~v~~~~ 300 (333)
T 2dg1_A 237 SCCIDSDDNLYVAMYGQGRVLVFNKR-GY-------PIGQILIPGRDEGHMLRSTHPQFIP--GTNQLIICSND 300 (333)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEECTT-SC-------EEEEEECTTGGGTCSCBCCEEEECT--TSCEEEEEEEC
T ss_pred ceEECCCCCEEEEEcCCCEEEEECCC-CC-------EEEEEEcCCCccccccCcceEEECC--CCCEEEEEeCc
Confidence 89999999988887778999999984 33 111222111 1222588999987 76555544444
No 189
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.51 E-value=2e-12 Score=107.24 Aligned_cols=198 Identities=14% Similarity=0.046 Sum_probs=141.1
Q ss_pred CccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccc-cceEEEEecCCC
Q 048511 48 ISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHE-DWVYSVQWEPPS 126 (351)
Q Consensus 48 ~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~-~~v~~l~~~p~~ 126 (351)
.+++|++++.|+.|.+||..+++.+.... .+. ..+.++.+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~-----------------------------------~~~~~~~~~~~~~--- 45 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYP-----------------------------------LEKGWECNSVAAT--- 45 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEE-----------------------------------CCTTCCCCEEEEC---
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeC-----------------------------------CCccCCCcCeEEC---
Confidence 36799999999999999998887654433 122 357788899
Q ss_pred CCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee-CCeEEEEEcc
Q 048511 127 TAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY-GGAFHLWRNV 205 (351)
Q Consensus 127 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~~~d~~ 205 (351)
+++++ ++ +.++.|..||. + ++.+..+.. .....+.++.+.++|+.+++.+. ++.|..+|..
T Consensus 46 ---pdG~i------lv--s~~~~V~~~d~-~--G~~~W~~~~----~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~ 107 (276)
T 3no2_A 46 ---KAGEI------LF--SYSKGAKMITR-D--GRELWNIAA----PAGCEMQTARILPDGNALVAWCGHPSTILEVNMK 107 (276)
T ss_dssp ---TTSCE------EE--ECBSEEEEECT-T--SCEEEEEEC----CTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT
T ss_pred ---CCCCE------EE--eCCCCEEEECC-C--CCEEEEEcC----CCCccccccEECCCCCEEEEecCCCCEEEEEeCC
Confidence 78887 77 45788999998 6 666666652 12246788999999999998887 7788888764
Q ss_pred cCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeee
Q 048511 206 GVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQG 285 (351)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 285 (351)
......+........+......+++.++|+++++...++.|..||.. ++ ..|+.- .. ..+..+.+.+
T Consensus 108 Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~------~~w~~~----~~-~~~~~~~~~~- 174 (276)
T 3no2_A 108 GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ------LLNSVK----LS-GTPFSSAFLD- 174 (276)
T ss_dssp SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC------EEEEEE----CS-SCCCEEEECT-
T ss_pred CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC------EEEEEE----CC-CCccceeEcC-
Confidence 32211111101111222345567789999999999999999999987 65 233322 22 2355677777
Q ss_pred CCCcEEEEecCCCeEEEEecC-chhhhceee
Q 048511 286 KGNHRFVSGADEKVARVFEAP-LSFLKTLNH 315 (351)
Q Consensus 286 ~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~ 315 (351)
+++++++++.+++|..+|.. ++.+..+..
T Consensus 175 -~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~ 204 (276)
T 3no2_A 175 -NGDCLVACGDAHCFVQLNLESNRIVRRVNA 204 (276)
T ss_dssp -TSCEEEECBTTSEEEEECTTTCCEEEEEEG
T ss_pred -CCCEEEEeCCCCeEEEEeCcCCcEEEEecC
Confidence 89999999999999999988 888877763
No 190
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.50 E-value=3e-11 Score=102.01 Aligned_cols=237 Identities=11% Similarity=0.045 Sum_probs=151.8
Q ss_pred cCCceeEEEeeCCcccCCCCCccEEEE-------eeCCCcEEEEecCCCcccceee---cccccceeeeEeeec-CCeEE
Q 048511 28 HTDWIRSLDFSLPVCTSGEAISILLVS-------SSQDKVIRIWKLALRGSSANTQ---STYRKEVISLASYIE-GPVLV 96 (351)
Q Consensus 28 h~~~V~~l~~~~~~~~~~~~~~~~l~t-------~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~l~ 96 (351)
.-....+++|. +++.++++ ...++.|.+||..+++...... ......+..+++.++ +.+++
T Consensus 16 ~~~~~~~~~~~--------~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v 87 (314)
T 1pjx_A 16 DIPGAEGPVFD--------KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV 87 (314)
T ss_dssp CCTTCEEEEEC--------TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE
T ss_pred cCCCccCceEC--------CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE
Confidence 34567899999 78888888 6778999999987765432111 012345778889998 77666
Q ss_pred ecCCceeEEEEE------ec-c----c-cccceEEEEecCCCCCCCCCcccCCCceeEEeecC---------------Ce
Q 048511 97 AGSSSYQVSVES------LL-I----G-HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD---------------KT 149 (351)
Q Consensus 97 ~~~~~~~~~~~~------~~-~----~-h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d---------------~~ 149 (351)
+.... .+..+. .+ . + ....+.++++. +++++ +++...+ +.
T Consensus 88 ~~~~~-~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d------~~g~l------~v~~~~~~~~~~~~~~~~~~~~~~ 154 (314)
T 1pjx_A 88 ADMRL-GLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFD------YEGNL------WITAPAGEVAPADYTRSMQEKFGS 154 (314)
T ss_dssp EETTT-EEEEEETTSCEEECCSBCTTSCBCBCCCEEEEC------TTSCE------EEEECBCBCTTSCCCBTTSSSCEE
T ss_pred EECCC-CEEEEeCCCCEEEEEeccCCCccccCCcCEEEC------CCCCE------EEEecCcccccccccccccCCCCe
Confidence 54433 222221 11 1 1 11347789998 67776 7666554 45
Q ss_pred EEEEeccCCCcceEEEEEeccccccccceEEEEEc----CCCCEEEEE-eeCCeEEEEEcc-cCcccCccccccccccc-
Q 048511 150 MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWS----PDGRSILAH-GYGGAFHLWRNV-GVDIDNWQPQKVPSGHF- 222 (351)
Q Consensus 150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~----~~~~~l~~~-~~dg~i~~~d~~-~~~~~~~~~~~~~~~~~- 222 (351)
|..||.. +...... ........++|+ |+++.++++ ..++.|.+||+. .+..........+..+.
T Consensus 155 l~~~~~~---g~~~~~~------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 225 (314)
T 1pjx_A 155 IYCFTTD---GQMIQVD------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE 225 (314)
T ss_dssp EEEECTT---SCEEEEE------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred EEEECCC---CCEEEec------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC
Confidence 6666654 2222211 122345788999 999766655 467899999986 33211011223333343
Q ss_pred ccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCc-EEEEecCCCeEE
Q 048511 223 AAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNH-RFVSGADEKVAR 301 (351)
Q Consensus 223 ~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~l~s~~~dg~v~ 301 (351)
..+..++++++|+++++...++.|.+||..+++ .+..+..+...+.+++|++ +++ ++++...++.|.
T Consensus 226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~----------~~~~~~~~~~~~~~i~~~~--dg~~l~v~~~~~~~l~ 293 (314)
T 1pjx_A 226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ----------PKMRIRCPFEKPSNLHFKP--QTKTIFVTEHENNAVW 293 (314)
T ss_dssp CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS----------CSEEEECSSSCEEEEEECT--TSSEEEEEETTTTEEE
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCc----------EeEEEeCCCCCceeEEECC--CCCEEEEEeCCCCeEE
Confidence 567889999999988887788999999987554 1112223445689999988 787 556666778999
Q ss_pred EEecC
Q 048511 302 VFEAP 306 (351)
Q Consensus 302 vw~~~ 306 (351)
.|++.
T Consensus 294 ~~~~~ 298 (314)
T 1pjx_A 294 KFEWQ 298 (314)
T ss_dssp EEECS
T ss_pred EEeCC
Confidence 99975
No 191
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.48 E-value=5e-11 Score=108.44 Aligned_cols=267 Identities=11% Similarity=0.054 Sum_probs=167.3
Q ss_pred CCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecC--CCcccceeecccc
Q 048511 3 GLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLA--LRGSSANTQSTYR 80 (351)
Q Consensus 3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~--~~~~~~~~~~~~~ 80 (351)
..+++|.++|..+ ++ .+.++.. ...+..+.|+ ++++++++++.|+.|.+||+. +.+....+.. .
T Consensus 174 ~~~~~V~viD~~t-~~--v~~~i~~-g~~p~~v~~S--------pDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~--G 239 (567)
T 1qks_A 174 RDAGQIALIDGST-YE--IKTVLDT-GYAVHISRLS--------ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--G 239 (567)
T ss_dssp TTTTEEEEEETTT-CC--EEEEEEC-SSCEEEEEEC--------TTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--C
T ss_pred CCCCeEEEEECCC-Ce--EEEEEeC-CCCccceEEC--------CCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec--C
Confidence 4578999999998 63 3445543 3356789999 899999999999999999996 5555544433 3
Q ss_pred cceeeeEee----ecCCeEEecCCc-eeEEEEE--------ecc--c--------ccc-ceEEEEecCCCCCCCCCcccC
Q 048511 81 KEVISLASY----IEGPVLVAGSSS-YQVSVES--------LLI--G--------HED-WVYSVQWEPPSTAPSDGVSCQ 136 (351)
Q Consensus 81 ~~~~~~~~~----~~~~~l~~~~~~-~~~~~~~--------~~~--~--------h~~-~v~~l~~~p~~~~~~~~~~~~ 136 (351)
.....++++ |+|++++++... ..+.++. .+. + |.. .+..+..++ ....+
T Consensus 240 ~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~-----~~~~~-- 312 (567)
T 1qks_A 240 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH-----YRPEF-- 312 (567)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS-----SSSEE--
T ss_pred CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcC-----CCCEE--
Confidence 456789999 699988876533 3333322 111 0 112 466777773 22334
Q ss_pred CCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-eCCeEEEEEcccCcccCcccc
Q 048511 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNVGVDIDNWQPQ 215 (351)
Q Consensus 137 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~ 215 (351)
++....+|.|.++|....+...+..+. .......+.|+|++++++++. .++.|.++|+.+++......+
T Consensus 313 ----vv~~~~~g~v~~vd~~~~~~~~v~~i~------~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~v 382 (567)
T 1qks_A 313 ----IVNVKETGKILLVDYTDLNNLKTTEIS------AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT 382 (567)
T ss_dssp ----EEEETTTTEEEEEETTCSSEEEEEEEE------CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred ----EEEecCCCeEEEEecCCCccceeeeee------ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEec
Confidence 666677899999998873222222221 223466889999999987766 579999999998742111111
Q ss_pred cccccccccEEEEEeecCCC-EEEEEe-CCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEE
Q 048511 216 KVPSGHFAAVMDISWSRSSD-YLLSVS-HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVS 293 (351)
Q Consensus 216 ~~~~~~~~~v~~v~~sp~~~-~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s 293 (351)
--...|.+.-..+ ++|++. .+++.. .++.|.++|....... ...|+.+..+...+..-..+..+| ++.++.+
T Consensus 383 gg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~---~~~~kvv~~i~~~g~g~~~i~~~p--~~~~l~v 456 (567)
T 1qks_A 383 GGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHP---DNAWKILDSFPALGGGSLFIKTHP--NSQYLYV 456 (567)
T ss_dssp SSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT---TTBTSEEEEEECSCSCCCCEECCT--TCSEEEE
T ss_pred cCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCc---cccCEEEEEEecCCCCCEEEEeCC--CCCeEEE
Confidence 0012243322222 578744 445543 4689999998764311 123555555544433334577888 7877766
Q ss_pred ecC-------CCeEEEEecC
Q 048511 294 GAD-------EKVARVFEAP 306 (351)
Q Consensus 294 ~~~-------dg~v~vw~~~ 306 (351)
... ...|.|+|+.
T Consensus 457 ~~~~~~~~~~~~~v~v~d~~ 476 (567)
T 1qks_A 457 DATLNPEAEISGSVAVFDIK 476 (567)
T ss_dssp ECTTCSSHHHHTCEEEEEGG
T ss_pred ecCCCCCcccCceEEEEECC
Confidence 542 4599999976
No 192
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.45 E-value=7.2e-11 Score=100.56 Aligned_cols=215 Identities=6% Similarity=-0.148 Sum_probs=139.0
Q ss_pred CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc---
Q 048511 4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR--- 80 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~--- 80 (351)
.++.|.+||..+ ++. +.++. .......++++ +++.++++...++.|.+||..+.+....+.....
T Consensus 62 ~~~~v~viD~~t-~~~--~~~i~-~~~~p~~i~~~--------~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~ 129 (328)
T 3dsm_A 62 NSHVIFAIDINT-FKE--VGRIT-GFTSPRYIHFL--------SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDME 129 (328)
T ss_dssp GGTEEEEEETTT-CCE--EEEEE-CCSSEEEEEEE--------ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTT
T ss_pred CCCEEEEEECcc-cEE--EEEcC-CCCCCcEEEEe--------CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcccc
Confidence 468999999998 643 34443 34678899998 6775555555899999999998776544443220
Q ss_pred -cceeeeEeeecCCeEEecC-CceeEEEEEeccc-------cccceEEEEecCCCCCCCCCcccCCCceeEEeecC----
Q 048511 81 -KEVISLASYIEGPVLVAGS-SSYQVSVESLLIG-------HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD---- 147 (351)
Q Consensus 81 -~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~-------h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d---- 147 (351)
.....+++ .++.++++.. .+..+.++..-.+ -......+.++ +++++ ++++..+
T Consensus 130 ~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~------~dG~l------~v~~~~~~~~~ 196 (328)
T 3dsm_A 130 SGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMD------KYNKM------WTITDGGYEGS 196 (328)
T ss_dssp TCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEEC------TTSEE------EEEBCCBCTTC
T ss_pred CCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEc------CCCCE------EEEECCCccCC
Confidence 13445555 4444444432 2445544432111 01223566777 67777 7777655
Q ss_pred ------CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccc
Q 048511 148 ------KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH 221 (351)
Q Consensus 148 ------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~ 221 (351)
+.|.++|..+ ++....+.+. .......++|+|+++.|+++.. .|.+||..+++.. ....+...
T Consensus 197 ~~~~~~~~v~~id~~t--~~v~~~~~~~----~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~---~~~~~~~~ 265 (328)
T 3dsm_A 197 PYGYEAPSLYRIDAET--FTVEKQFKFK----LGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP---VRPFLEFR 265 (328)
T ss_dssp SSCBCCCEEEEEETTT--TEEEEEEECC----TTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC---SSCSBCCC
T ss_pred ccccCCceEEEEECCC--CeEEEEEecC----CCCCceeEEEecCCCEEEEEcc--EEEEEECCCCcee---eeeeecCC
Confidence 7899999988 6665555421 1235789999999998888755 8999999876421 11112222
Q ss_pred cccEEEEEeec-CCCEEEEE----eCCCcEEEEcCCCcc
Q 048511 222 FAAVMDISWSR-SSDYLLSV----SHDQTTRVFAPWKNV 255 (351)
Q Consensus 222 ~~~v~~v~~sp-~~~~l~s~----~~dg~i~vwd~~~~~ 255 (351)
......++++| ++.++++. ..++.|.+||.. ++
T Consensus 266 ~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 266 DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 45688999999 55666665 568999999987 54
No 193
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.45 E-value=2.7e-10 Score=98.57 Aligned_cols=262 Identities=10% Similarity=0.014 Sum_probs=162.3
Q ss_pred eEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEee----------CCCcEEEEecCCCcccceee
Q 048511 7 KIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSS----------QDKVIRIWKLALRGSSANTQ 76 (351)
Q Consensus 7 ~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~----------~dg~i~iwd~~~~~~~~~~~ 76 (351)
+|.+||..+ ++ .+..+..-..+ .++++ +++++|+.+. .++.|.+||..+.+....+.
T Consensus 48 ~v~v~D~~t-~~--~~~~i~~g~~p--~i~~s--------pDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~ 114 (373)
T 2mad_H 48 QQWVLDAGS-GS--ILGHVNGGFLP--NPVAA--------HSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIE 114 (373)
T ss_pred EEEEEECCC-Ce--EEEEecCCCCC--CeEEC--------CCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEE
Confidence 889999988 64 44556543333 89999 8899998885 36789999998776655443
Q ss_pred cc-c-----ccceeeeEeeecCCeEEecCC--ceeEEEEEeccccc-cc-e---EEEEecCCCCCCCCCcccCCCceeEE
Q 048511 77 ST-Y-----RKEVISLASYIEGPVLVAGSS--SYQVSVESLLIGHE-DW-V---YSVQWEPPSTAPSDGVSCQQPSSILS 143 (351)
Q Consensus 77 ~~-~-----~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~h~-~~-v---~~l~~~p~~~~~~~~~~~~~~~~l~s 143 (351)
.. . ......++++|+|+.++++.. ...+.++. -.+.. .. + .++.+.| ..... +++
T Consensus 115 ~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~-----~~~~~------~~~ 182 (373)
T 2mad_H 115 LPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHP-----GAPST------FYL 182 (373)
T ss_pred CCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEe-----CCCce------EEE
Confidence 32 0 124558899999999998763 35566655 22210 00 0 1233332 12234 677
Q ss_pred eecCCeEEEEeccCCCcceEEEEEeccccccccc-eEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc---
Q 048511 144 ASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALG-FYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS--- 219 (351)
Q Consensus 144 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--- 219 (351)
.+.||.+.++|. . +................+ .....+.+++..++..+.++.+.+.|+...... .+..+.
T Consensus 183 ~~~dg~~~~vd~-~--g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~---v~~~~~~~~ 256 (373)
T 2mad_H 183 LCAQGGLAKTDH-A--GGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGAT---NKAPIDALS 256 (373)
T ss_pred EcCCCCEEEEEC-C--CcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcce---EeeeeeecC
Confidence 788999999999 6 544422211000011111 223456666665555557889999998754311 111111
Q ss_pred -------cccccEEEEEeecCCCEEEEEeC----------CCcEEEEcCCCccccccCccceEEeccccccccceeEEEE
Q 048511 220 -------GHFAAVMDISWSRSSDYLLSVSH----------DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTI 282 (351)
Q Consensus 220 -------~~~~~v~~v~~sp~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 282 (351)
........+.++|+++.++.+.. .+.|.++|..+.+ .+..+. .+.....++|
T Consensus 257 ~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~----------vv~~i~-~g~~p~~i~~ 325 (373)
T 2mad_H 257 GGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ----------TSSQIS-LGHDVDAISV 325 (373)
T ss_pred CcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE----------EEEEEE-CCCCcCeEEE
Confidence 01223445788999888777543 3579999998876 333332 2235789999
Q ss_pred eeeCCCc-EEEEec-CCCeEEEEecC-chhhhc
Q 048511 283 IQGKGNH-RFVSGA-DEKVARVFEAP-LSFLKT 312 (351)
Q Consensus 283 ~~~~~~~-~l~s~~-~dg~v~vw~~~-~~~~~~ 312 (351)
++ |++ +++++. .++.|.+||+. ++.+++
T Consensus 326 s~--Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 326 AQ--DGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CC--CCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 99 888 677766 58999999987 565555
No 194
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.44 E-value=5.7e-10 Score=93.33 Aligned_cols=252 Identities=11% Similarity=0.033 Sum_probs=161.2
Q ss_pred CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511 4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV 83 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 83 (351)
.++.|.+|+.. +++.. ..+..+...+.+|++. +++.++++...++.|..||.. +.............+
T Consensus 39 ~~~~v~~~~~~--~~~~~-~~~~~~~~~~~~i~~~--------~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~ 106 (300)
T 2qc5_A 39 KANKISSLDQS--GRIKE-FEVPTPDAKVMCLIVS--------SLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGP 106 (300)
T ss_dssp TTTEEEEECTT--SCEEE-EECSSTTCCEEEEEEC--------TTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCE
T ss_pred CCCeEEEECCC--CceEE-EECCCCCCcceeEEEC--------CCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCC
Confidence 35778888766 33332 2333444678999998 778877777667889999987 443211111123457
Q ss_pred eeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEec
Q 048511 84 ISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQP 155 (351)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 155 (351)
..+++.++|.++++......+..+. .+......+..+++. +++++ +++...++.|..+|.
T Consensus 107 ~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d------~~g~l------~v~~~~~~~i~~~~~ 174 (300)
T 2qc5_A 107 YGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLG------SDNAL------WFTENQNNSIGRITN 174 (300)
T ss_dssp EEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEEC------TTSSE------EEEETTTTEEEEECT
T ss_pred ccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEEEC------CCCCE------EEEecCCCeEEEECC
Confidence 7888888888777654333332221 122234567888988 67777 777766888999998
Q ss_pred cCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCC
Q 048511 156 EKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSD 235 (351)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 235 (351)
. +.... +. .......+..++++++++..++....+.|.+||. ++.. ....+..+...+.++++.++|+
T Consensus 175 -~--g~~~~-~~---~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~----~~~~~~~~~~~~~~i~~d~~g~ 242 (300)
T 2qc5_A 175 -T--GKLEE-YP---LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEI----SEYDIPTPNARPHAITAGKNSE 242 (300)
T ss_dssp -T--CCEEE-EE---CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE----EEEECSSTTCCEEEEEECSTTC
T ss_pred -C--CcEEE-ee---CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcE----EEEECCCCCCCceEEEECCCCC
Confidence 4 44332 22 1123346889999999987776666788999998 3321 1112223445688999999998
Q ss_pred EEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511 236 YLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA 305 (351)
Q Consensus 236 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~ 305 (351)
++++...++.|..||.. +. +.... .......+.++++.+ ++.++++.. . .|..++.
T Consensus 243 l~v~~~~~~~i~~~~~~-g~--------~~~~~-~~~~~~~~~~i~~~~--~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 243 IWFTEWGANQIGRITND-NT--------IQEYQ-LQTENAEPHGITFGK--DGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp EEEEETTTTEEEEECTT-SC--------EEEEE-CCSTTCCCCCEEECT--TSCEEEECS-S-EEEEEEE
T ss_pred EEEeccCCCeEEEECCC-Cc--------EEEEE-CCccCCccceeEeCC--CCCEEEEcc-C-ceEEeCC
Confidence 77776667899999983 33 11111 112334578899988 787777665 4 6666664
No 195
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.44 E-value=1.9e-10 Score=100.90 Aligned_cols=236 Identities=9% Similarity=-0.045 Sum_probs=149.1
Q ss_pred CceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCce--eEEEE
Q 048511 30 DWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSY--QVSVE 107 (351)
Q Consensus 30 ~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ 107 (351)
.....|+|+ ++++++++...++.|++||..++........ ..... ++++++++.+++++... .+..+
T Consensus 131 ~~P~~la~d--------~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~--~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~ 199 (409)
T 3hrp_A 131 KYMWGIAAV--------GNNTVLAYQRDDPRVRLISVDDNKVTTVHPG--FKGGK-PAVTKDKQRVYSIGWEGTHTVYVY 199 (409)
T ss_dssp CCEEEEEEC--------STTEEEEEETTTTEEEEEETTTTEEEEEEET--CCBCB-CEECTTSSEEEEEBSSTTCEEEEE
T ss_pred CCceEEEEe--------CCCCEEEEecCCCcEEEEECCCCEEEEeecc--CCCCc-eeEecCCCcEEEEecCCCceEEEE
Confidence 357889999 7888888777789999999987654433222 22233 88999999887766543 33332
Q ss_pred Ee--------c---cc-cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc
Q 048511 108 SL--------L---IG-HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA 175 (351)
Q Consensus 108 ~~--------~---~~-h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 175 (351)
.. + .. ....+.+++++| .++.+ ++ +..++.|+.||... +.. ..+.........
T Consensus 200 d~~~~~~~~~~g~~~~~~~~~p~~iav~p-----~~g~l------yv-~d~~~~I~~~d~~~--~~~-~~~~~~~~~g~~ 264 (409)
T 3hrp_A 200 MKASGWAPTRIGQLGSTFSGKIGAVALDE-----TEEWL------YF-VDSNKNFGRFNVKT--QEV-TLIKQLELSGSL 264 (409)
T ss_dssp EGGGTTCEEEEEECCTTSCSCCCBCEECT-----TSSEE------EE-ECTTCEEEEEETTT--CCE-EEEEECCCCSCC
T ss_pred EcCCCceeEEeeeccchhcCCcEEEEEeC-----CCCeE------EE-EECCCcEEEEECCC--CCE-EEEecccccCCC
Confidence 21 1 11 334567788883 25554 44 66788999999987 332 222100011111
Q ss_pred cce-E-EEEEcCC-CCEEEEEeeCCeEEEEEcccCcccCcccccccccc---------------cccEEEEEeecCCCEE
Q 048511 176 LGF-Y-GGHWSPD-GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH---------------FAAVMDISWSRSSDYL 237 (351)
Q Consensus 176 ~~i-~-~i~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~---------------~~~v~~v~~sp~~~~l 237 (351)
..- . .++|+|+ +.++++-..++.|+.|+.... +..+.++ -.....++++|+|+++
T Consensus 265 ~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~ly 337 (409)
T 3hrp_A 265 GTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFY 337 (409)
T ss_dssp CCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEE
T ss_pred CCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEE
Confidence 111 3 8999996 555555556789999987653 1111111 2347899999999988
Q ss_pred EEEe-CCCcEEEEcCCCccccccCccceEEeccc---------cccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511 238 LSVS-HDQTTRVFAPWKNVASLMGENSWHEVARP---------QVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA 305 (351)
Q Consensus 238 ~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~ 305 (351)
++-+ .++.|+.|++.++... .+.-.... ...-.....+++++ ++.++++-..+++|+.+++
T Consensus 338 vad~~~~~~I~~~~~~~G~v~-----~~~g~~~~~g~~~g~~~~~~~~~P~giavd~--~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 338 IVDGFKGYCLRKLDILDGYVS-----TVAGQVDVASQIDGTPLEATFNYPYDICYDG--EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEETTTTCEEEEEETTTTEEE-----EEEECTTCBSCCCBSTTTCCBSSEEEEEECS--SSEEEEEESTTCEEEEEEE
T ss_pred EEeCCCCCEEEEEECCCCEEE-----EEeCCCCCCCcCCCChhceEeCCceEEEEcC--CCCEEEEECCCCeEEEEEe
Confidence 8877 8899999997666411 11100000 00123478999999 7889999999999998875
No 196
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.44 E-value=3.4e-10 Score=94.70 Aligned_cols=239 Identities=8% Similarity=-0.048 Sum_probs=157.4
Q ss_pred eeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeE
Q 048511 25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQV 104 (351)
Q Consensus 25 ~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 104 (351)
+......+.+|.+. +++.++++...++.|.+||.. +.............+..+++.+++.++++......+
T Consensus 15 ~~~~~~~p~~i~~d--------~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v 85 (300)
T 2qc5_A 15 LSIPDSGPYGITSS--------EDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKI 85 (300)
T ss_dssp CSSTTCCEEEEEEC--------TTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred cCCCCCCcceeeEC--------CCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeE
Confidence 33445678899999 788888877778999999987 433221111122456788888888877765544433
Q ss_pred EEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccccccc
Q 048511 105 SVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSAL 176 (351)
Q Consensus 105 ~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 176 (351)
..+. .+......+.++++. +++++ +++...++.|..+|... ... .+. ......
T Consensus 86 ~~~d~~g~~~~~~~~~~~~~~~~i~~~------~~g~l------~v~~~~~~~i~~~~~~g---~~~-~~~---~~~~~~ 146 (300)
T 2qc5_A 86 GKLSKKGGFTEYPLPQPDSGPYGITEG------LNGDI------WFTQLNGDRIGKLTADG---TIY-EYD---LPNKGS 146 (300)
T ss_dssp EEECTTSCEEEEECSSTTCCEEEEEEC------STTCE------EEEETTTTEEEEECTTS---CEE-EEE---CSSTTC
T ss_pred EEECCCCCeEEecCCCCCCCCccceEC------CCCCE------EEEccCCCeEEEECCCC---CEE-Ecc---CCCCCC
Confidence 3221 112223568889988 67777 77776688899998762 222 222 112345
Q ss_pred ceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccc
Q 048511 177 GFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVA 256 (351)
Q Consensus 177 ~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~ 256 (351)
.+..++++++++..++...++.|..||. +++. . ......+...+..+++.+++.++++....+.|.+||. ++.
T Consensus 147 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~---~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~- 219 (300)
T 2qc5_A 147 YPAFITLGSDNALWFTENQNNSIGRITN-TGKL---E-EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE- 219 (300)
T ss_dssp CEEEEEECTTSSEEEEETTTTEEEEECT-TCCE---E-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC-
T ss_pred CceeEEECCCCCEEEEecCCCeEEEECC-CCcE---E-EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc-
Confidence 6889999999996666656789999998 4321 1 1122233456889999999987777666778999998 333
Q ss_pred cccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCch
Q 048511 257 SLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLS 308 (351)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~ 308 (351)
+.... ...+...+.++++.+ ++.++++...++.|..|+..+.
T Consensus 220 -------~~~~~-~~~~~~~~~~i~~d~--~g~l~v~~~~~~~i~~~~~~g~ 261 (300)
T 2qc5_A 220 -------ISEYD-IPTPNARPHAITAGK--NSEIWFTEWGANQIGRITNDNT 261 (300)
T ss_dssp -------EEEEE-CSSTTCCEEEEEECS--TTCEEEEETTTTEEEEECTTSC
T ss_pred -------EEEEE-CCCCCCCceEEEECC--CCCEEEeccCCCeEEEECCCCc
Confidence 11111 112345578999998 7888887777899999998653
No 197
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.42 E-value=3.2e-11 Score=99.59 Aligned_cols=200 Identities=8% Similarity=-0.031 Sum_probs=134.1
Q ss_pred ceeEEEeeCCcccCCCCCccEEE-EeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEe
Q 048511 31 WIRSLDFSLPVCTSGEAISILLV-SSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL 109 (351)
Q Consensus 31 ~V~~l~~~~~~~~~~~~~~~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 109 (351)
...++++. +++++++ +.+.++.|.+|+..+..... .
T Consensus 25 ~p~~i~~~--------~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~---------------------------------- 61 (270)
T 1rwi_B 25 SPSGVAVD--------SAGNVYVTSEGMYGRVVKLATGSTGTTV-L---------------------------------- 61 (270)
T ss_dssp CEEEEEEC--------TTCCEEEEECSSSCEEEEECC-----EE-C----------------------------------
T ss_pred CccceEEC--------CCCCEEEEccCCCCcEEEecCCCcccce-E----------------------------------
Confidence 67889999 7788777 54778899999865432110 0
Q ss_pred ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCE
Q 048511 110 LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRS 189 (351)
Q Consensus 110 ~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 189 (351)
...+...+.++++. +++++ +++.. ++.|.+||... ... ..+. ......+..++++++++.
T Consensus 62 ~~~~~~~p~~i~~~------~~g~l------~v~~~-~~~i~~~d~~~--~~~-~~~~----~~~~~~p~~i~~~~~g~l 121 (270)
T 1rwi_B 62 PFNGLYQPQGLAVD------GAGTV------YVTDF-NNRVVTLAAGS--NNQ-TVLP----FDGLNYPEGLAVDTQGAV 121 (270)
T ss_dssp CCCSCCSCCCEEEC------TTCCE------EEEET-TTEEEEECTTC--SCC-EECC----CCSCSSEEEEEECTTCCE
T ss_pred eeCCcCCcceeEEC------CCCCE------EEEcC-CCEEEEEeCCC--ceE-eeee----cCCcCCCcceEECCCCCE
Confidence 01122456788998 67776 66665 88999999875 322 1121 122246789999999997
Q ss_pred EEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecc
Q 048511 190 ILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVAR 269 (351)
Q Consensus 190 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 269 (351)
+++...++.|.+|+..+.. ...........+.+++++++++++++...++.|.+||..... ....
T Consensus 122 ~v~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~----------~~~~ 186 (270)
T 1rwi_B 122 YVADRGNNRVVKLAAGSKT-----QTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN----------QVVL 186 (270)
T ss_dssp EEEEGGGTEEEEECTTCCS-----CEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC----------EEEC
T ss_pred EEEECCCCEEEEEECCCce-----eEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc----------eEee
Confidence 7777778999999765432 111112223457889999999977777778899999987654 1111
Q ss_pred ccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhh
Q 048511 270 PQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFL 310 (351)
Q Consensus 270 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~ 310 (351)
...+...+..+++++ ++.++++...++.|.+|+..+...
T Consensus 187 ~~~~~~~p~~i~~d~--~g~l~v~~~~~~~v~~~~~~~~~~ 225 (270)
T 1rwi_B 187 PFTDITAPWGIAVDE--AGTVYVTEHNTNQVVKLLAGSTTS 225 (270)
T ss_dssp CCSSCCSEEEEEECT--TCCEEEEETTTSCEEEECTTCSCC
T ss_pred cccCCCCceEEEECC--CCCEEEEECCCCcEEEEcCCCCcc
Confidence 112224578999998 788888888899999999876543
No 198
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.42 E-value=2.2e-10 Score=96.14 Aligned_cols=215 Identities=6% Similarity=-0.035 Sum_probs=131.1
Q ss_pred CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511 4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV 83 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 83 (351)
.++.|+.||..+ ++.. .+ .+...+.+++++ ++++++++ . ++.|.+||..++.......
T Consensus 33 ~~~~i~~~d~~~-~~~~---~~-~~~~~~~~i~~~--------~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~------- 90 (297)
T 3g4e_A 33 PAKKVCRWDSFT-KQVQ---RV-TMDAPVSSVALR--------QSGGYVAT-I-GTKFCALNWKEQSAVVLAT------- 90 (297)
T ss_dssp TTTEEEEEETTT-CCEE---EE-ECSSCEEEEEEB--------TTSSEEEE-E-TTEEEEEETTTTEEEEEEE-------
T ss_pred CCCEEEEEECCC-CcEE---EE-eCCCceEEEEEC--------CCCCEEEE-E-CCeEEEEECCCCcEEEEEe-------
Confidence 467788888877 5432 22 235678999999 77885554 3 5678899987654221110
Q ss_pred eeeEeeecCCeEEecCCceeEEEEEecc-ccccceEEEEecCCCCCCCCCcccCCCceeEEeecC---------CeEEEE
Q 048511 84 ISLASYIEGPVLVAGSSSYQVSVESLLI-GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD---------KTMMIW 153 (351)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d---------~~i~iw 153 (351)
... .....++.+++. +++++ +++.... ..-.||
T Consensus 91 -------------------------~~~~~~~~~~~di~~d------~dG~l------~~~~~~~~~~~~~~~~~~~~l~ 133 (297)
T 3g4e_A 91 -------------------------VDNDKKNNRFNDGKVD------PAGRY------FAGTMAEETAPAVLERHQGALY 133 (297)
T ss_dssp -------------------------CCTTCSSEEEEEEEEC------TTSCE------EEEEEECCSBTTBCCTTCEEEE
T ss_pred -------------------------cCCCCCCCCCCCEEEC------CCCCE------EEecCCcccccccccCCCcEEE
Confidence 000 112347788888 67776 6654322 234556
Q ss_pred eccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEE-eeCCeEEEEEcc--cCcccCcccccccccccccEEEEEe
Q 048511 154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAH-GYGGAFHLWRNV--GVDIDNWQPQKVPSGHFAAVMDISW 230 (351)
Q Consensus 154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~~~d~~--~~~~~~~~~~~~~~~~~~~v~~v~~ 230 (351)
.+... +.... +. ........++|+|+++.|+.+ +.++.|.+|++. ++..........+..+...+..+++
T Consensus 134 ~~d~~-g~~~~-~~-----~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~ 206 (297)
T 3g4e_A 134 SLFPD-HHVKK-YF-----DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCI 206 (297)
T ss_dssp EECTT-SCEEE-EE-----EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEE
T ss_pred EEECC-CCEEE-Ee-----eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEE
Confidence 55431 22222 11 122345789999999877555 457899999974 3321111122333334457889999
Q ss_pred ecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEe-eeCCCcE-EEEecC
Q 048511 231 SRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTII-QGKGNHR-FVSGAD 296 (351)
Q Consensus 231 sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~-l~s~~~ 296 (351)
.++|++.++...++.|.+||..+++ .+..+..+...+++++|. | +++. +++...
T Consensus 207 d~~G~lwva~~~~~~v~~~d~~tG~----------~~~~i~~p~~~~t~~~f~g~--d~~~L~vt~~~ 262 (297)
T 3g4e_A 207 DAEGKLWVACYNGGRVIRLDPVTGK----------RLQTVKLPVDKTTSCCFGGK--NYSEMYVTCAR 262 (297)
T ss_dssp BTTSCEEEEEETTTEEEEECTTTCC----------EEEEEECSSSBEEEEEEESG--GGCEEEEEEBC
T ss_pred CCCCCEEEEEcCCCEEEEEcCCCce----------EEEEEECCCCCceEEEEeCC--CCCEEEEEcCC
Confidence 9999888877778889999998776 333333444568999998 6 5544 444443
No 199
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.41 E-value=8.8e-12 Score=107.21 Aligned_cols=186 Identities=16% Similarity=0.099 Sum_probs=124.9
Q ss_pred ceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEec
Q 048511 31 WIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLL 110 (351)
Q Consensus 31 ~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 110 (351)
.++.++++ +...++++|+.++ +++|++............ . .... ..
T Consensus 39 ~~nlLais--------~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~---~---------------------~~~~-~~ 84 (388)
T 1xip_A 39 SLQNLDIS--------NSKSLFVAASGSK-AVVGELQLLRDHITSDST---P---------------------LTFK-WE 84 (388)
T ss_dssp CCBCEEEE--------TTTTEEEEEETTE-EEEEEHHHHHHHHHSSSC---C---------------------CCCS-EE
T ss_pred cccEEEEc--------CCCCEEEEeCCCE-EEEEEhhHhhhhhccccc---c---------------------ccce-EE
Confidence 68999999 7888999999885 666998654311100000 0 0000 01
Q ss_pred cccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEE
Q 048511 111 IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSI 190 (351)
Q Consensus 111 ~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 190 (351)
..+.. |+.++|. ++. |+++ .++.|++||++.. ....... .+...+.++.+.+. .+
T Consensus 85 ~~lp~-V~~l~fd--------~~~------L~v~-~~~~l~v~dv~sl--~~~~~~~-----~~~~~v~~i~~~~p--~~ 139 (388)
T 1xip_A 85 KEIPD-VIFVCFH--------GDQ------VLVS-TRNALYSLDLEEL--SEFRTVT-----SFEKPVFQLKNVNN--TL 139 (388)
T ss_dssp EECTT-EEEEEEE--------TTE------EEEE-ESSEEEEEESSST--TCEEEEE-----ECSSCEEEEEECSS--EE
T ss_pred eeCCC-eeEEEEC--------CCE------EEEE-cCCcEEEEEchhh--hccCccc-----eeecceeeEEecCC--CE
Confidence 12455 9999983 345 7777 8899999999873 3333333 34456777776654 38
Q ss_pred EEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecc-
Q 048511 191 LAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVAR- 269 (351)
Q Consensus 191 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~- 269 (351)
+++..||.|.+||+.++.. . .+...|++++|+|+| ++.|..||.+++|+....... .-..+..
T Consensus 140 av~~~dG~L~v~dl~~~~~-----~----~~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~-----~k~~I~~P 203 (388)
T 1xip_A 140 VILNSVNDLSALDLRTKST-----K----QLAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEME-----KQFEFSLP 203 (388)
T ss_dssp EEEETTSEEEEEETTTCCE-----E----EEEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEE-----EEEEECCC
T ss_pred EEEECCCCEEEEEccCCcc-----c----cccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCcccc-----ccceecCC
Confidence 8899999999999987631 2 145689999999999 677889999999988665410 0112211
Q ss_pred --cc---ccccceeEEEEeeeCCCcEEEE
Q 048511 270 --PQ---VHGHDINCVTIIQGKGNHRFVS 293 (351)
Q Consensus 270 --~~---~~~~~i~~~~~~~~~~~~~l~s 293 (351)
+. +|...|.++.|.+ ++.++++
T Consensus 204 p~~~~~~~~~~~V~sI~wl~--~~~flv~ 230 (388)
T 1xip_A 204 SELEELPVEEYSPLSVTILS--PQDFLAV 230 (388)
T ss_dssp HHHHTSCTTTSEEEEEEESS--SSEEEEE
T ss_pred cccccccCCCeeEEEEEEec--CCeEEEE
Confidence 11 3677899999998 7888775
No 200
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.39 E-value=4.8e-11 Score=102.33 Aligned_cols=194 Identities=10% Similarity=0.136 Sum_probs=125.0
Q ss_pred CCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCc-----eeEEEEE-------eccccccceEEEEecCC
Q 048511 58 DKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSS-----YQVSVES-------LLIGHEDWVYSVQWEPP 125 (351)
Q Consensus 58 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~-------~~~~h~~~v~~l~~~p~ 125 (351)
++.|.+||+.+++.... .....+.|+|+|+.|+..... ..+.++. .+..+.. +..+.|+
T Consensus 42 ~~~l~~~d~~~~~~~~l------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~ws-- 112 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI------ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWN-- 112 (347)
T ss_dssp EEEEEEEETTTCCEEEE------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEEC--
T ss_pred cceEEEEeCCCCceEEc------ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeEC--
Confidence 56799999987654222 356788999999988875432 2232222 1222233 8899999
Q ss_pred CCCCCCCcccCCCceeEEeecC---------------------------CeEEEEeccCCCcceEEEEEeccccccccce
Q 048511 126 STAPSDGVSCQQPSSILSASMD---------------------------KTMMIWQPEKTTGIWMNVVTVGELSHSALGF 178 (351)
Q Consensus 126 ~~~~~~~~~~~~~~~l~s~~~d---------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i 178 (351)
|+++. |+.++.+ ..|.+||+.. +..+..+. . . .+
T Consensus 113 ----pdg~~------l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~--~~~~~~l~-----~-~-~~ 173 (347)
T 2gop_A 113 ----EDSRK------LLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES--EEVIEEFE-----K-P-RF 173 (347)
T ss_dssp ----TTSSE------EEEEEECCCC---------CCCC---------CEEEEEEEETTT--TEEEEEEE-----E-E-TT
T ss_pred ----CCCCE------EEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC--CeEEeeec-----C-C-Cc
Confidence 78887 8777642 5789999987 55434443 1 2 57
Q ss_pred EEEEEcCCCCEEEEEeeCC-------eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCC--------
Q 048511 179 YGGHWSPDGRSILAHGYGG-------AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD-------- 243 (351)
Q Consensus 179 ~~i~~~~~~~~l~~~~~dg-------~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d-------- 243 (351)
..++|+|++ +++++..++ ...||.+.+++ ...+..+ ..+..+ +|+|++|+.++.+
T Consensus 174 ~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~------~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~ 243 (347)
T 2gop_A 174 SSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK------EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEH 243 (347)
T ss_dssp CEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE------EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSS
T ss_pred ccccCCCCe-EEEEEecccccccccccccEEEeCCCc------eEEeccC-cceeeE--CCCCCEEEEEEccccCCcccc
Confidence 789999999 777776542 34555544332 2233333 445444 9999998877644
Q ss_pred CcEEEEcCCCccccccCccceEEeccccccccceeE-EEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 244 QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINC-VTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 244 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
..|.+|| +++ .......+...+.. +.|+ ++ ++++++.++.++|| +.
T Consensus 244 ~~l~~~d--~~~----------~~~l~~~~~~~~~~~~~~s---dg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 244 NKLYIYD--GKE----------VMGILDEVDRGVGQAKIKD---GK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp CEEEEEC--SSC----------EEESSTTCCSEEEEEEEET---TE-EEEEEEETTEEEEE-EE
T ss_pred ceEEEEC--CCc----------eEeccccCCcccCCccEEc---Cc-EEEEEecCCcEEEE-Ec
Confidence 3688888 333 12222344556775 7775 46 88999999999999 86
No 201
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.39 E-value=1.2e-10 Score=99.84 Aligned_cols=269 Identities=12% Similarity=0.072 Sum_probs=166.5
Q ss_pred CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEee----------CCCcEEEEecCCCcccce
Q 048511 5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSS----------QDKVIRIWKLALRGSSAN 74 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~----------~dg~i~iwd~~~~~~~~~ 74 (351)
++.|.+.|..+ + +.+.++..-..+ .+.++ +++++|+.+. .++.|.+||..+.+....
T Consensus 58 ~~~V~ViD~~t-~--~v~~~I~vG~~P--~va~s--------pDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~ 124 (386)
T 3sjl_D 58 VTQQFVIDGEA-G--RVIGMIDGGFLP--NPVVA--------DDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTAD 124 (386)
T ss_dssp SEEEEEEETTT-T--EEEEEEEECSSC--EEEEC--------TTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEE
T ss_pred CCEEEEEECCC-C--eEEEEEECCCCC--cEEEC--------CCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEE
Confidence 67999999988 6 445666644444 49999 8899887765 367899999999887766
Q ss_pred eeccc------ccceeeeEeeecCCeEEecCC--ceeEEEEEeccccccceEEE------EecCCCCCCCCCcccCCCce
Q 048511 75 TQSTY------RKEVISLASYIEGPVLVAGSS--SYQVSVESLLIGHEDWVYSV------QWEPPSTAPSDGVSCQQPSS 140 (351)
Q Consensus 75 ~~~~~------~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~h~~~v~~l------~~~p~~~~~~~~~~~~~~~~ 140 (351)
+..+. ......++++++|+.++++.. ...+.++..-... .+..+ .+.| ...+.
T Consensus 125 I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~--vv~tI~v~g~~~~~P-----~g~~~------ 191 (386)
T 3sjl_D 125 IELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA--FKRMLDVPDCYHIFP-----TAPDT------ 191 (386)
T ss_dssp EEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE--EEEEEECCSEEEEEE-----EETTE------
T ss_pred EECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc--EEEEEECCCcceeec-----CCCce------
Confidence 64432 235678999999999888753 4566555432211 11111 2232 23344
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceE-EEEEc-CCCCEEEEEeeCCeEEEEEcccCcccCccccccc
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFY-GGHWS-PDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP 218 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~-~i~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 218 (351)
+++.+.||.+.+.++... +....... .........+. ...|. ++|++++ .+.+|.|++.|+.+...........+
T Consensus 192 ~~~~~~DG~~~~v~~~~~-g~v~~~~~-~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~ 268 (386)
T 3sjl_D 192 FFMHCRDGSLAKVAFGTE-GTPEITHT-EVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEAL 268 (386)
T ss_dssp EEEEETTSCEEEEECCSS-SCCEEEEC-CCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESS
T ss_pred eEEECCCCCEEEEECCCC-CeEEEeec-ceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecc
Confidence 778888999999998752 22221111 11111112222 24554 6776555 55589999999976532111111100
Q ss_pred c-------cccccEEEEEeecCCCEEEEEeC----------CCcEEEEcCCCccccccCccceEEeccccccccceeEEE
Q 048511 219 S-------GHFAAVMDISWSRSSDYLLSVSH----------DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVT 281 (351)
Q Consensus 219 ~-------~~~~~v~~v~~sp~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 281 (351)
. ........++++|+++.++.... ...|.++|+.+.+ .+.++. -+..++.++
T Consensus 269 ~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k----------v~~~i~-vg~~~~~la 337 (386)
T 3sjl_D 269 TEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE----------RLAKFE-MGHEIDSIN 337 (386)
T ss_dssp CHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC----------EEEEEE-EEEEECEEE
T ss_pred ccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe----------EEEEEE-CCCCcceEE
Confidence 0 01223445778999888877542 2579999998887 333322 123688999
Q ss_pred EeeeCCCc-EE-EEecCCCeEEEEecC-chhhhceee
Q 048511 282 IIQGKGNH-RF-VSGADEKVARVFEAP-LSFLKTLNH 315 (351)
Q Consensus 282 ~~~~~~~~-~l-~s~~~dg~v~vw~~~-~~~~~~~~~ 315 (351)
+++ |++ +| ++...++.|.++|.. ++.++++..
T Consensus 338 vs~--D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 338 VSQ--DEKPLLYALSTGDKTLYIHDAESGEELRSVNQ 372 (386)
T ss_dssp ECS--SSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred ECC--CCCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence 999 765 54 445679999999986 776666644
No 202
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.38 E-value=9.3e-10 Score=100.11 Aligned_cols=282 Identities=10% Similarity=0.042 Sum_probs=172.4
Q ss_pred CCCCceEEEEEcc--CCCceEEEEeeeecCCceeEEEeeCCcccCCCC----CccEEEEee-CCCcEEEEecCCCcccce
Q 048511 2 GGLDNKIHLYRGQ--RTGKFVRACELKGHTDWIRSLDFSLPVCTSGEA----ISILLVSSS-QDKVIRIWKLALRGSSAN 74 (351)
Q Consensus 2 g~~dg~i~vw~~~--~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~----~~~~l~t~~-~dg~i~iwd~~~~~~~~~ 74 (351)
++.|+.|.+||+. + . ..+..+.... ....++|+ + +|++++++. .+++|.++|..+.+.+..
T Consensus 214 ~~~dg~V~viD~~~~t-~--~~v~~i~~G~-~P~~ia~s--------~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~ 281 (567)
T 1qks_A 214 IGRDGKVNMIDLWMKE-P--TTVAEIKIGS-EARSIETS--------KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI 281 (567)
T ss_dssp EETTSEEEEEETTSSS-C--CEEEEEECCS-EEEEEEEC--------CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEE
T ss_pred EcCCCeEEEEECCCCC-C--cEeEEEecCC-CCceeEEc--------cccCCCCCEEEEEEccCCeEEEEECCCCcEEEE
Confidence 4568899999995 4 4 3445565433 45789998 4 788877765 459999999988777655
Q ss_pred eeccc----------ccceeeeEeeecCCeEEec-CCceeEEEEEecc---------ccccceEEEEecCCCCCCCCCcc
Q 048511 75 TQSTY----------RKEVISLASYIEGPVLVAG-SSSYQVSVESLLI---------GHEDWVYSVQWEPPSTAPSDGVS 134 (351)
Q Consensus 75 ~~~~~----------~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~---------~h~~~v~~l~~~p~~~~~~~~~~ 134 (351)
+.... ...+..+..++++..+++. ...+.+.++.... .......++.|+ +++++
T Consensus 282 i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~------pdgr~ 355 (567)
T 1qks_A 282 QSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLD------GSHRY 355 (567)
T ss_dssp EECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEEC------TTSCE
T ss_pred EeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceEC------CCCCE
Confidence 43221 1134566666665544432 3334443332111 122346678899 78887
Q ss_pred cCCCceeEEee-cCCeEEEEeccCCCcceEEEEEe-ccccccc-cceEEEEEcCCCCEEE-EEe-eCCeEEEEEcccCcc
Q 048511 135 CQQPSSILSAS-MDKTMMIWQPEKTTGIWMNVVTV-GELSHSA-LGFYGGHWSPDGRSIL-AHG-YGGAFHLWRNVGVDI 209 (351)
Q Consensus 135 ~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~-~~i~~i~~~~~~~~l~-~~~-~dg~i~~~d~~~~~~ 209 (351)
|+++. .++.|.++|+.+ ++.+..+.+ ... .|. ..+. + ++|++..++ ++. .++.|.++|......
T Consensus 356 ------~~va~~~sn~V~ViD~~t--~kl~~~i~vgg~~-Phpg~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~ 424 (567)
T 1qks_A 356 ------FITAANARNKLVVIDTKE--GKLVAIEDTGGQT-PHPGRGAN-F-VHPTFGPVWATSHMGDDSVALIGTDPEGH 424 (567)
T ss_dssp ------EEEEEGGGTEEEEEETTT--TEEEEEEECSSSS-BCCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred ------EEEEeCCCCeEEEEECCC--CcEEEEEeccCcC-CCCcccee-e-ECCCCCcEEEeCCCCCCeEEEecCCCCCC
Confidence 65554 688999999998 777776665 332 232 2222 2 588755444 443 468999999876332
Q ss_pred c--CcccccccccccccEEEEEeecCCCEEEEEeC-------CCcEEEEcCCCccccccCccceEEec-----ccccccc
Q 048511 210 D--NWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-------DQTTRVFAPWKNVASLMGENSWHEVA-----RPQVHGH 275 (351)
Q Consensus 210 ~--~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~-----~~~~~~~ 275 (351)
. .++.++++......-..+..+|++++|.+... ..+|.|+|+.+.+.... ...++.+. .+...+.
T Consensus 425 ~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~ 503 (567)
T 1qks_A 425 PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGS-DPEFKTLPIAEWAGITEGQP 503 (567)
T ss_dssp TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSS-CCCEEEECHHHHHTCCSSCC
T ss_pred ccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCccccccc-CCCcEEeccccccccCCCCc
Confidence 1 23455666544333345788999999887653 35999999987610000 01112221 1111245
Q ss_pred ceeEEEEeeeCCCcEEEEe--c---CCCeEEEEecC-chhhhceee
Q 048511 276 DINCVTIIQGKGNHRFVSG--A---DEKVARVFEAP-LSFLKTLNH 315 (351)
Q Consensus 276 ~i~~~~~~~~~~~~~l~s~--~---~dg~v~vw~~~-~~~~~~~~~ 315 (351)
.+..+.|++ +|..+..+ + .++.|.|+|.. .+.+.+++.
T Consensus 504 ~~~~~~~~~--~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 504 RVVQGEFNK--DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp EEEEEEECT--TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred ceEeeeECC--CCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 688999999 77666544 2 47899999976 555555543
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.38 E-value=4.7e-10 Score=94.63 Aligned_cols=224 Identities=10% Similarity=0.064 Sum_probs=138.6
Q ss_pred CCCceEEEEEccCCCceEEEEe--eeecCCceeEEEeeCCcccCCCCC-ccEEEEeeCCCcEEEEecCCCcccce-eec-
Q 048511 3 GLDNKIHLYRGQRTGKFVRACE--LKGHTDWIRSLDFSLPVCTSGEAI-SILLVSSSQDKVIRIWKLALRGSSAN-TQS- 77 (351)
Q Consensus 3 ~~dg~i~vw~~~~~~~~~~~~~--~~~h~~~V~~l~~~~~~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~-~~~- 77 (351)
..++.|.+||..+ +++..+.. ..++...+.++++. ++ ++++++.. .+.|.+||.. ++.... ...
T Consensus 43 ~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~~~i~~~--------~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~ 111 (314)
T 1pjx_A 43 KPAGEILRIDLKT-GKKTVICKPEVNGYGGIPAGCQCD--------RDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDS 111 (314)
T ss_dssp EECCEEEEECTTT-CCEEEEECCEETTEECCEEEEEEC--------SSSSEEEEEET-TTEEEEEETT-SCEEECCSBCT
T ss_pred CCCCEEEEEeCCC-CcEEEEEecccCCCCCCCceEEEe--------cCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccC
Confidence 4578899999877 65433221 01255678999999 77 66555444 4478899987 543221 111
Q ss_pred --ccccceeeeEeeecCCeEEecCCc---------------eeEEEEEe------ccccccceEEEEec----CCCCCCC
Q 048511 78 --TYRKEVISLASYIEGPVLVAGSSS---------------YQVSVESL------LIGHEDWVYSVQWE----PPSTAPS 130 (351)
Q Consensus 78 --~~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~~~~------~~~h~~~v~~l~~~----p~~~~~~ 130 (351)
.....+..+++.++|.++++.... ..+..+.. +..+......++++ |
T Consensus 112 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~d~------ 185 (314)
T 1pjx_A 112 EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDG------ 185 (314)
T ss_dssp TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTS------
T ss_pred CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEeccCCCCcceEEEecccCC------
Confidence 112346788899999887775443 23322221 11122335667777 5
Q ss_pred CCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc-cceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcc
Q 048511 131 DGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA-LGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDI 209 (351)
Q Consensus 131 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 209 (351)
+++. ++++...++.|.+||+... +.............+. ..+..++++++|+++++...++.|.+||..+++
T Consensus 186 dg~~-----l~v~~~~~~~i~~~~~~~~-g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~- 258 (314)
T 1pjx_A 186 RPYQ-----LIVAETPTKKLWSYDIKGP-AKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ- 258 (314)
T ss_dssp CEEE-----EEEEETTTTEEEEEEEEET-TEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS-
T ss_pred CCCE-----EEEEECCCCeEEEEECCCC-CccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCc-
Confidence 4433 0455556889999998721 3322111111122232 457889999999888877788999999988542
Q ss_pred cCcccccccccccccEEEEEeecCCCEE-EEEeCCCcEEEEcCCCc
Q 048511 210 DNWQPQKVPSGHFAAVMDISWSRSSDYL-LSVSHDQTTRVFAPWKN 254 (351)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l-~s~~~dg~i~vwd~~~~ 254 (351)
.+..+..+...+.+++|+|+++.| ++...++.|..|++...
T Consensus 259 ----~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 259 ----PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp ----CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred ----EeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 334444455778999999999955 45556789999998654
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.37 E-value=1.7e-10 Score=109.32 Aligned_cols=241 Identities=12% Similarity=-0.013 Sum_probs=147.4
Q ss_pred cCCceeEEEeeCCcccCCCCCccEEEEeeCC-----CcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCce
Q 048511 28 HTDWIRSLDFSLPVCTSGEAISILLVSSSQD-----KVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSY 102 (351)
Q Consensus 28 h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 102 (351)
|...+..++|+ |+|++||.++.+ ..|++||+.+++....... ......++|+|+ +.|+.+..+.
T Consensus 161 ~~~~~~~~~~S--------PDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~--~~~~~~~~wspD-~~l~~~~~~~ 229 (741)
T 1yr2_A 161 GATALDAWAAS--------DDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELK--WVKFSGLAWLGN-DALLYSRFAE 229 (741)
T ss_dssp --EEEEEEEEC--------TTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEE--EEESCCCEESTT-SEEEEEECCC
T ss_pred CCEEEEeEEEC--------CCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCC--CceeccEEEECC-CEEEEEEecC
Confidence 44468899999 889999877654 4699999998876543211 112257889999 8777654322
Q ss_pred --------------eEEEEEe----------c--cccccceEEEEecCCCCCCCCCcccCCCceeEEeecCC-----eEE
Q 048511 103 --------------QVSVESL----------L--IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDK-----TMM 151 (351)
Q Consensus 103 --------------~~~~~~~----------~--~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~-----~i~ 151 (351)
.+..+.. + ..+...+..+.|+ +||++ |+..+.++ .|.
T Consensus 230 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~S------pDG~~------l~~~~~~~~~~~~~l~ 297 (741)
T 1yr2_A 230 PKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVS------SDGRW------VVITSSEGTDPVNTVH 297 (741)
T ss_dssp C--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC------TTSCE------EEEEEECTTCSCCEEE
T ss_pred cccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEEC------CCCCE------EEEEEEccCCCcceEE
Confidence 2333221 1 1122357889999 79988 88777554 899
Q ss_pred EEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC----CeEEEEEcccCcccCcccccccccccccEEE
Q 048511 152 IWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG----GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD 227 (351)
Q Consensus 152 iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~ 227 (351)
+||+..........+. .+...+.... +|+++.|+..+.+ +.|.+||+.+.. . .....+..+...+..
T Consensus 298 ~~d~~~~~~~~~~~l~-----~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~--~~~~l~~~~~~~l~~ 368 (741)
T 1yr2_A 298 VARVTNGKIGPVTALI-----PDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST-P--RFDTVVPESKDNLES 368 (741)
T ss_dssp EEEEETTEECCCEEEE-----CSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS-C--EEEEEECCCSSEEEE
T ss_pred EEECCCCCCcccEEec-----CCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc-c--ccEEEecCCCCeEEE
Confidence 9999872113122332 2222334443 4888888877753 569999987641 0 112223344455777
Q ss_pred EEeecCCCEEEEEeCCCcEEEEcCC-CccccccCccceEEeccccc-cccceeEEEEeeeCCCcEEE----EecCCCeEE
Q 048511 228 ISWSRSSDYLLSVSHDQTTRVFAPW-KNVASLMGENSWHEVARPQV-HGHDINCVTIIQGKGNHRFV----SGADEKVAR 301 (351)
Q Consensus 228 v~~sp~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~----s~~~dg~v~ 301 (351)
++++ ++.++++...|+..+||.+. .+. ....+.. ....+..+++++ ++..|+ +....+.|+
T Consensus 369 ~~~~-~~~lv~~~~~dg~~~l~~~~~~g~----------~~~~l~~~~~~~v~~~~~s~--d~~~l~~~~ss~~~P~~i~ 435 (741)
T 1yr2_A 369 VGIA-GNRLFASYIHDAKSQVLAFDLDGK----------PAGAVSLPGIGSASGLSGRP--GDRHAYLSFSSFTQPATVL 435 (741)
T ss_dssp EEEE-BTEEEEEEEETTEEEEEEEETTSC----------EEEECBCSSSCEEEEEECCB--TCSCEEEEEEETTEEEEEE
T ss_pred EEEE-CCEEEEEEEECCEEEEEEEeCCCC----------ceeeccCCCCeEEEEeecCC--CCCEEEEEEcCCCCCCEEE
Confidence 8887 56678888889988777654 222 1222222 245588889988 666555 334568999
Q ss_pred EEecCchhhhce
Q 048511 302 VFEAPLSFLKTL 313 (351)
Q Consensus 302 vw~~~~~~~~~~ 313 (351)
+||+.......+
T Consensus 436 ~~d~~tg~~~~l 447 (741)
T 1yr2_A 436 ALDPATAKTTPW 447 (741)
T ss_dssp EEETTTTEEEEC
T ss_pred EEECCCCcEEEE
Confidence 999874334434
No 205
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.33 E-value=4.5e-10 Score=105.91 Aligned_cols=217 Identities=9% Similarity=-0.079 Sum_probs=137.2
Q ss_pred CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCc----------------EEEEecCC
Q 048511 5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKV----------------IRIWKLAL 68 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~----------------i~iwd~~~ 68 (351)
..+|++||+.+ ++.... .+.. ..+..++|+ ++++.|+.++.++. |.+|++.+
T Consensus 150 ~~~i~v~d~~t-g~~~~~-~~~~--~~~~~~~ws--------pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t 217 (710)
T 2xdw_A 150 WVTIKFMKVDG-AKELPD-VLER--VKFSCMAWT--------HDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGT 217 (710)
T ss_dssp CEEEEEEETTT-TEEEEE-EEEE--ECSCCEEEC--------TTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTS
T ss_pred eEEEEEEECCC-CCCCcc-cccC--cccceEEEE--------eCCCEEEEEEECCccccccccccccCCCCEEEEEECCC
Confidence 34899999998 754332 2322 236789999 88999999888776 99999987
Q ss_pred Cccccee-ecc--cccceeeeEeeecCCeEEecCC-----ceeEEEEEe---------------ccccccceEEEEecCC
Q 048511 69 RGSSANT-QST--YRKEVISLASYIEGPVLVAGSS-----SYQVSVESL---------------LIGHEDWVYSVQWEPP 125 (351)
Q Consensus 69 ~~~~~~~-~~~--~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~---------------~~~h~~~v~~l~~~p~ 125 (351)
+...... ... .......+.++++|+.|+.... ...+.++.. +..+...+.. .|+
T Consensus 218 ~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s-- 294 (710)
T 2xdw_A 218 DQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVT-- 294 (710)
T ss_dssp CGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEE--
T ss_pred CcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEe--
Confidence 6532111 111 1233568899999998887542 334444332 1223333333 366
Q ss_pred CCCCCCCcccCCCceeEEeecC----CeEEEEeccCCCcceEEEEEeccccccc-cceEEEEEcCCCCEEEEEeeCCe--
Q 048511 126 STAPSDGVSCQQPSSILSASMD----KTMMIWQPEKTTGIWMNVVTVGELSHSA-LGFYGGHWSPDGRSILAHGYGGA-- 198 (351)
Q Consensus 126 ~~~~~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~-- 198 (351)
+++.. |+..+.. ..|.+||+...+......+. .... ..+..++|++++.++++...++.
T Consensus 295 ----~dg~~------l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~ 360 (710)
T 2xdw_A 295 ----NEGTV------FTFKTNRHSPNYRLINIDFTDPEESKWKVLV----PEHEKDVLEWVACVRSNFLVLCYLHDVKNT 360 (710)
T ss_dssp ----EETTE------EEEEECTTCTTCEEEEEETTSCCGGGCEEEE----CCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred ----ccCCE------EEEEECCCCCCCEEEEEeCCCCCcccceecc----CCCCCCeEEEEEEEcCCEEEEEEEECCEEE
Confidence 56665 5555442 36999998873211122222 1222 35778999888888888888885
Q ss_pred EEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE-e---CCCcEEEEcCCCcc
Q 048511 199 FHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV-S---HDQTTRVFAPWKNV 255 (351)
Q Consensus 199 i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~-~---~dg~i~vwd~~~~~ 255 (351)
|.+|++.++ ..+..+..+.+.+..+.++|++..++.. + ..++|++||+.+++
T Consensus 361 l~~~~~~~g-----~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 361 LQLHDLATG-----ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEETTTC-----CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEECCCC-----CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 555566454 2345555667788999999998766533 2 35789999997765
No 206
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.33 E-value=2.9e-10 Score=99.14 Aligned_cols=266 Identities=11% Similarity=0.027 Sum_probs=166.5
Q ss_pred ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEee----------CCCcEEEEecCCCccccee
Q 048511 6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSS----------QDKVIRIWKLALRGSSANT 75 (351)
Q Consensus 6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~----------~dg~i~iwd~~~~~~~~~~ 75 (351)
+.|.++|..+ . +.+.++..-..+ .+.++ +++++|+.+. .++.|.++|..+.+....+
T Consensus 99 ~~VsVID~~t-~--~vv~~I~vG~~P--gia~S--------pDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I 165 (426)
T 3c75_H 99 TQQFVIDGST-G--RILGMTDGGFLP--HPVAA--------EDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADI 165 (426)
T ss_dssp EEEEEEETTT-T--EEEEEEEECSSC--EEEEC--------TTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEE
T ss_pred CeEEEEECCC-C--EEEEEEECCCCC--ceEEC--------CCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEE
Confidence 7999999998 6 445566543445 89999 8898888775 4678999999998877665
Q ss_pred ecc------cccceeeeEeeecCCeEEecCC--ceeEEEEEeccccccceEEE------EecCCCCCCCCCcccCCCcee
Q 048511 76 QST------YRKEVISLASYIEGPVLVAGSS--SYQVSVESLLIGHEDWVYSV------QWEPPSTAPSDGVSCQQPSSI 141 (351)
Q Consensus 76 ~~~------~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~h~~~v~~l------~~~p~~~~~~~~~~~~~~~~l 141 (351)
... .......+.++++|+.++++.. ...+.++..-... .+..+ ...| ..... +
T Consensus 166 ~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~k--vv~~I~v~g~~~~~p-----~g~~~------~ 232 (426)
T 3c75_H 166 ELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKT--FDRMLDVPDCYHIFP-----ASPTV------F 232 (426)
T ss_dssp EETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTE--EEEEEECCSEEEEEE-----EETTE------E
T ss_pred ECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCe--EEEEEEcCCceeecc-----CCCcE------E
Confidence 432 1234568899999999998753 4555555432211 11122 2221 11233 6
Q ss_pred EEeecCCeEEEEeccCCCcceEEEEEeccccccccc-eEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccc---
Q 048511 142 LSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALG-FYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKV--- 217 (351)
Q Consensus 142 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--- 217 (351)
++.+.||.+.+.+... +....... ........+ ...+.+.+++..++.....+.+.+.|+.............
T Consensus 233 v~~~~dG~~~~V~~~~--~~v~~~~~-~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~ 309 (426)
T 3c75_H 233 YMNCRDGSLARVDFAD--GETKVTNT-EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTE 309 (426)
T ss_dssp EEEETTSSEEEEECCT--TCCEEEEC-CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCT
T ss_pred EEEcCCCCEEEEECCC--CcEEEEee-eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccc
Confidence 7777899988888854 33332111 001111111 1235678998888777888999999986543210000000
Q ss_pred --cc--cccccEEEEEeecCCCEEEEEeC----------CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEe
Q 048511 218 --PS--GHFAAVMDISWSRSSDYLLSVSH----------DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTII 283 (351)
Q Consensus 218 --~~--~~~~~v~~v~~sp~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 283 (351)
.. ........++++|+++.+++... ++.|.++|..+.+ .+.++.. +.....++|+
T Consensus 310 ~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k----------vv~~I~v-g~~P~gia~s 378 (426)
T 3c75_H 310 AERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE----------RINKIEL-GHEIDSINVS 378 (426)
T ss_dssp TTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC----------EEEEEEE-EEEECEEEEC
T ss_pred cccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe----------EEEEEEC-CCCcCeEEEc
Confidence 00 01112233789999887766542 3579999998887 3333322 2247899999
Q ss_pred eeCCCc-EEEEec-CCCeEEEEecC-chhhhce
Q 048511 284 QGKGNH-RFVSGA-DEKVARVFEAP-LSFLKTL 313 (351)
Q Consensus 284 ~~~~~~-~l~s~~-~dg~v~vw~~~-~~~~~~~ 313 (351)
+ |++ ++++.. .++.|.|+|+. .+.++++
T Consensus 379 p--Dg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 379 Q--DAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp C--SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred c--CCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 9 887 676666 69999999987 6666665
No 207
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.33 E-value=3.4e-10 Score=106.43 Aligned_cols=235 Identities=12% Similarity=0.060 Sum_probs=144.9
Q ss_pred CCccEEEEeeCCC---cEEEEecC--CCcccceeecc------cccceeeeEeeecCCeEE-----ecCCceeEEEEEec
Q 048511 47 AISILLVSSSQDK---VIRIWKLA--LRGSSANTQST------YRKEVISLASYIEGPVLV-----AGSSSYQVSVESLL 110 (351)
Q Consensus 47 ~~~~~l~t~~~dg---~i~iwd~~--~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~ 110 (351)
++|++++....++ .-.+|... .+.. ..+... +...+..+.|+|+|+.|+ .|+....+.++..-
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQE-KVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCC-EEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCc-EEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 5677777665544 34555543 3322 112111 122467889999999998 35555667666542
Q ss_pred cc------cccce--EEEEecCCCCCCCCCcccCCCceeEEeecCCe-------------EEEEeccCCCcceEEEEEec
Q 048511 111 IG------HEDWV--YSVQWEPPSTAPSDGVSCQQPSSILSASMDKT-------------MMIWQPEKTTGIWMNVVTVG 169 (351)
Q Consensus 111 ~~------h~~~v--~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~-------------i~iwd~~~~~~~~~~~~~~~ 169 (351)
.+ +...+ ..++|+ +|++. |+.++.|.. |++|++.+........+.
T Consensus 156 tg~~~~~~~~~~~~~~~~~ws------pDg~~------l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~-- 221 (695)
T 2bkl_A 156 SGEWSKVDVIEGGKYATPKWT------PDSKG------FYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE-- 221 (695)
T ss_dssp TCCBCSSCCBSCCTTCCCEEC------TTSSE------EEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC--
T ss_pred CCCCcCCcccCcccccceEEe------cCCCE------EEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe--
Confidence 21 22223 678999 78888 999888776 999999873222111111
Q ss_pred cccccccceEEEEEcCCCCEEEEEeeCC----eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe---C
Q 048511 170 ELSHSALGFYGGHWSPDGRSILAHGYGG----AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS---H 242 (351)
Q Consensus 170 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg----~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~---~ 242 (351)
...+...+..+.|+|+|++|+.++.++ .|++++..++. ...+..+...+....+ +++.+++... .
T Consensus 222 -~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~------~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~ 293 (695)
T 2bkl_A 222 -RTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD------FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAP 293 (695)
T ss_dssp -CCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS------CEEEEECSSCCEEEEE-ETTEEEEEECTTCT
T ss_pred -cCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc------eEEeecCCCceEEEEe-cCCcEEEEECCCCC
Confidence 223445788999999999998887766 66666554432 3344445555566666 5666444443 2
Q ss_pred CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC--chhhhce
Q 048511 243 DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP--LSFLKTL 313 (351)
Q Consensus 243 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~--~~~~~~~ 313 (351)
++.|.+||+.++. ...|..+... .....+..++|+ ++.++++...|+..+||.++ ++.++.+
T Consensus 294 ~~~l~~~d~~~~~-----~~~~~~l~~~-~~~~~l~~~~~~---~~~lv~~~~~dg~~~l~~~~~~g~~~~~l 357 (695)
T 2bkl_A 294 RQRVFEVDPAKPA-----RASWKEIVPE-DSSASLLSVSIV---GGHLSLEYLKDATSEVRVATLKGKPVRTV 357 (695)
T ss_dssp TCEEEEEBTTBCS-----GGGCEEEECC-CSSCEEEEEEEE---TTEEEEEEEETTEEEEEEEETTCCEEEEC
T ss_pred CCEEEEEeCCCCC-----ccCCeEEecC-CCCCeEEEEEEE---CCEEEEEEEECCEEEEEEEeCCCCeeEEe
Confidence 5889999997764 1234444321 113457778886 47889999999998888653 5444333
No 208
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.32 E-value=3.5e-09 Score=89.98 Aligned_cols=214 Identities=14% Similarity=0.029 Sum_probs=126.2
Q ss_pred CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511 4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV 83 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 83 (351)
.++.|.+||..+ ++... +. +...+.++.|. ++++++++. .+ .|.+||..+++......
T Consensus 69 ~~~~i~~~d~~~-~~~~~---~~-~~~~v~~i~~~--------~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~------- 126 (326)
T 2ghs_A 69 LERELHELHLAS-GRKTV---HA-LPFMGSALAKI--------SDSKQLIAS-DD-GLFLRDTATGVLTLHAE------- 126 (326)
T ss_dssp GGTEEEEEETTT-TEEEE---EE-CSSCEEEEEEE--------ETTEEEEEE-TT-EEEEEETTTCCEEEEEC-------
T ss_pred CCCEEEEEECCC-CcEEE---EE-CCCcceEEEEe--------CCCeEEEEE-CC-CEEEEECCCCcEEEEee-------
Confidence 456788888876 54322 22 34578889998 778777654 33 48888876654211000
Q ss_pred eeeEeeecCCeEEecCCceeEEEEEecc-ccccceEEEEecCCCCCCCCCcccCCCceeEEeecC----CeEEEEeccCC
Q 048511 84 ISLASYIEGPVLVAGSSSYQVSVESLLI-GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD----KTMMIWQPEKT 158 (351)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~ 158 (351)
... .....+.++.++ +++++ +++...+ +...||.+..
T Consensus 127 -------------------------~~~~~~~~~~~~i~~d------~~G~l------~v~~~~~~~~~~~~~l~~~~~- 168 (326)
T 2ghs_A 127 -------------------------LESDLPGNRSNDGRMH------PSGAL------WIGTMGRKAETGAGSIYHVAK- 168 (326)
T ss_dssp -------------------------SSTTCTTEEEEEEEEC------TTSCE------EEEEEETTCCTTCEEEEEEET-
T ss_pred -------------------------CCCCCCCCCCCCEEEC------CCCCE------EEEeCCCcCCCCceEEEEEeC-
Confidence 000 112357889999 67776 6654322 2233444433
Q ss_pred CcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-eCCeEEEEEcc--cC-cccCcccccccccccccEEEEEeecCC
Q 048511 159 TGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNV--GV-DIDNWQPQKVPSGHFAAVMDISWSRSS 234 (351)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~--~~-~~~~~~~~~~~~~~~~~v~~v~~sp~~ 234 (351)
+.... +. ........++|+|+++.++.+. .++.|.+||+. ++ ..........+......+..+++.++|
T Consensus 169 -g~~~~-~~-----~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G 241 (326)
T 2ghs_A 169 -GKVTK-LF-----ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG 241 (326)
T ss_dssp -TEEEE-EE-----EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS
T ss_pred -CcEEE-ee-----CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC
Confidence 43322 11 1122457899999998776554 56899999986 43 211111122222334567889999999
Q ss_pred CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEe-eeCCCcEE-EEecCC
Q 048511 235 DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTII-QGKGNHRF-VSGADE 297 (351)
Q Consensus 235 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~l-~s~~~d 297 (351)
.++++...++.|.+||. +++ .+..+..+...+++++|. + ++..| ++...+
T Consensus 242 ~lwva~~~~~~v~~~d~-~g~----------~~~~i~~~~~~~~~~af~g~--d~~~L~vt~~~~ 293 (326)
T 2ghs_A 242 HIWNARWGEGAVDRYDT-DGN----------HIARYEVPGKQTTCPAFIGP--DASRLLVTSARE 293 (326)
T ss_dssp CEEEEEETTTEEEEECT-TCC----------EEEEEECSCSBEEEEEEEST--TSCEEEEEEBCT
T ss_pred CEEEEEeCCCEEEEECC-CCC----------EEEEEECCCCCcEEEEEecC--CCCEEEEEecCC
Confidence 88777766789999998 343 222233444568999998 6 65544 444444
No 209
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.28 E-value=4e-11 Score=103.11 Aligned_cols=148 Identities=6% Similarity=-0.029 Sum_probs=107.3
Q ss_pred ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCC-------cceEEEEEeccccccccceEEEEEcCCCC
Q 048511 116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTT-------GIWMNVVTVGELSHSALGFYGGHWSPDGR 188 (351)
Q Consensus 116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 188 (351)
.++.++++ +...+ +++|+.++ +++|++.... +....... ..... |+.++| +++
T Consensus 39 ~~nlLais------~~~gl------l~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~----~~lp~-V~~l~f--d~~ 98 (388)
T 1xip_A 39 SLQNLDIS------NSKSL------FVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE----KEIPD-VIFVCF--HGD 98 (388)
T ss_dssp CCBCEEEE------TTTTE------EEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE----EECTT-EEEEEE--ETT
T ss_pred cccEEEEc------CCCCE------EEEeCCCE-EEEEEhhHhhhhhccccccccceEE----eeCCC-eeEEEE--CCC
Confidence 58889999 66677 88888875 6669977521 00110011 12344 999999 899
Q ss_pred EEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEec
Q 048511 189 SILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVA 268 (351)
Q Consensus 189 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 268 (351)
+|+++ .++.|++||+++.. .......|...+.++.+.+. .+++++.||.|.+||+.++. ..
T Consensus 99 ~L~v~-~~~~l~v~dv~sl~-----~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~----------~~- 159 (388)
T 1xip_A 99 QVLVS-TRNALYSLDLEELS-----EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS----------TK- 159 (388)
T ss_dssp EEEEE-ESSEEEEEESSSTT-----CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC----------EE-
T ss_pred EEEEE-cCCcEEEEEchhhh-----ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCc----------cc-
Confidence 99998 88999999997753 22334456667888777654 38888999999999998775 11
Q ss_pred cccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchh
Q 048511 269 RPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSF 309 (351)
Q Consensus 269 ~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~ 309 (351)
.+...|+|++|+| +| ++.|..||.+++|+.++..
T Consensus 160 ---~~~~~Vs~v~WSp--kG--~~vg~~dg~i~~~~~~~~~ 193 (388)
T 1xip_A 160 ---QLAQNVTSFDVTN--SQ--LAVLLKDRSFQSFAWRNGE 193 (388)
T ss_dssp ---EEEESEEEEEECS--SE--EEEEETTSCEEEEEEETTE
T ss_pred ---cccCCceEEEEcC--Cc--eEEEEcCCcEEEEcCCCcc
Confidence 1345699999999 67 6788899999999877444
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.26 E-value=9.3e-09 Score=86.14 Aligned_cols=214 Identities=13% Similarity=0.045 Sum_probs=135.4
Q ss_pred cCCceeEEEeeCCcccCCCC-CccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEE
Q 048511 28 HTDWIRSLDFSLPVCTSGEA-ISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSV 106 (351)
Q Consensus 28 h~~~V~~l~~~~~~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 106 (351)
+..-.-+..|+ + ++.++++...++.|..||..++... ..
T Consensus 11 ~~~~~Egp~w~--------~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~------------------------------- 50 (297)
T 3g4e_A 11 NCRCGESPVWE--------EVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV------------------------------- 50 (297)
T ss_dssp CCSBEEEEEEE--------TTTTEEEEEETTTTEEEEEETTTCCEE-EE-------------------------------
T ss_pred CCccccCCeEE--------CCCCEEEEEECCCCEEEEEECCCCcEE-EE-------------------------------
Confidence 33445578888 5 4567777777899999998865421 00
Q ss_pred EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCC
Q 048511 107 ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD 186 (351)
Q Consensus 107 ~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 186 (351)
.....+.++++. +++++ +++. ++.|.+||..+ +........ ........+..++++|+
T Consensus 51 -----~~~~~~~~i~~~------~dG~l------~v~~--~~~l~~~d~~~--g~~~~~~~~-~~~~~~~~~~di~~d~d 108 (297)
T 3g4e_A 51 -----TMDAPVSSVALR------QSGGY------VATI--GTKFCALNWKE--QSAVVLATV-DNDKKNNRFNDGKVDPA 108 (297)
T ss_dssp -----ECSSCEEEEEEB------TTSSE------EEEE--TTEEEEEETTT--TEEEEEEEC-CTTCSSEEEEEEEECTT
T ss_pred -----eCCCceEEEEEC------CCCCE------EEEE--CCeEEEEECCC--CcEEEEEec-CCCCCCCCCCCEEECCC
Confidence 123568899999 67776 6554 56799999987 443322221 11112345788999999
Q ss_pred CCEEEEEeeC---------CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEE-EEeCCCcEEEEcCC--Cc
Q 048511 187 GRSILAHGYG---------GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLL-SVSHDQTTRVFAPW--KN 254 (351)
Q Consensus 187 ~~~l~~~~~d---------g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~-s~~~dg~i~vwd~~--~~ 254 (351)
|+++++.... ..-.+|.+.... . ...+.......+.++|+|+++.|+ +.+.++.|.+||+. ++
T Consensus 109 G~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g----~-~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G 183 (297)
T 3g4e_A 109 GRYFAGTMAEETAPAVLERHQGALYSLFPDH----H-VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTG 183 (297)
T ss_dssp SCEEEEEEECCSBTTBCCTTCEEEEEECTTS----C-EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTC
T ss_pred CCEEEecCCcccccccccCCCcEEEEEECCC----C-EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCC
Confidence 9966654332 234555554321 1 122223344568899999998764 45567899999873 33
Q ss_pred cccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceee
Q 048511 255 VASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNH 315 (351)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~ 315 (351)
.. ...+.+..+..+...+..+++.+ ++++.++...++.|.+||.. ++.+..+..
T Consensus 184 ~~-----~~~~~~~~~~~~~~~p~g~~~d~--~G~lwva~~~~~~v~~~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 184 QI-----SNRRSVYKLEKEEQIPDGMCIDA--EGKLWVACYNGGRVIRLDPVTGKRLQTVKL 238 (297)
T ss_dssp CE-----EEEEEEEECCGGGCEEEEEEEBT--TSCEEEEEETTTEEEEECTTTCCEEEEEEC
T ss_pred cc-----cCcEEEEECCCCCCCCCeeEECC--CCCEEEEEcCCCEEEEEcCCCceEEEEEEC
Confidence 31 01112222323334578899988 88888888888999999987 777766653
No 211
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.21 E-value=2.2e-09 Score=92.09 Aligned_cols=259 Identities=9% Similarity=-0.029 Sum_probs=157.4
Q ss_pred eEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEee----------CCCcEEEEecCCCcccceee
Q 048511 7 KIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSS----------QDKVIRIWKLALRGSSANTQ 76 (351)
Q Consensus 7 ~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~----------~dg~i~iwd~~~~~~~~~~~ 76 (351)
+|.++|..+ + +.+.++..-..+ .+.++ +++++++.+. .+++|.+||+.+.+....+.
T Consensus 47 ~vsvID~~t-~--~v~~~i~vG~~P--~i~~s--------pDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~ 113 (368)
T 1mda_H 47 ENWVSCAGC-G--VTLGHSLGAFLS--LAVAG--------HSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE 113 (368)
T ss_dssp EEEEEETTT-T--EEEEEEEECTTC--EEEEC--------TTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE
T ss_pred eEEEEECCC-C--eEEEEEeCCCCC--ceEEC--------CCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEE
Confidence 888999988 6 455666644455 79999 8898888876 47899999999998877765
Q ss_pred ccc------ccceeeeEeeecCCeEEecCC--ceeEEEEEeccccccceEEEE------ecCCCCCCCCCcccCCCceeE
Q 048511 77 STY------RKEVISLASYIEGPVLVAGSS--SYQVSVESLLIGHEDWVYSVQ------WEPPSTAPSDGVSCQQPSSIL 142 (351)
Q Consensus 77 ~~~------~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~h~~~v~~l~------~~p~~~~~~~~~~~~~~~~l~ 142 (351)
.+. ......++++|+|+.++++.. ...+.+ ..+...+ +..+. +. +++.. .++
T Consensus 114 v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V-~~iD~~t--v~~i~v~~~~~~~------p~g~~-----~~~ 179 (368)
T 1mda_H 114 LPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGL-SVPGASD--DQLTKSASCFHIH------PGAAA-----THY 179 (368)
T ss_dssp ETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEE-EETTTEE--EEEEECSSCCCCE------EEETT-----EEE
T ss_pred CCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEE-EEEchhh--ceEEECCCceEEc------cCCCe-----EEE
Confidence 431 135678999999999988753 233433 1111111 22222 22 22221 155
Q ss_pred EeecCCeEEEEeccCCC---cceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc
Q 048511 143 SASMDKTMMIWQPEKTT---GIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS 219 (351)
Q Consensus 143 s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 219 (351)
+.+.|+.+.+.|+.... ++...... ........+. . .+++..++..+. +.+.+.|+.+... +.+..+.
T Consensus 180 ~~~~dg~~~~vd~~~~~~~~~~v~~~~t-~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~---~v~~~~~ 250 (368)
T 1mda_H 180 LGSCPASLAASDLAAAPAAAGIVGAQCT-GAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGA---TMKAAID 250 (368)
T ss_dssp CCCCTTSCEEEECCSSCCCCEECCCCSC-TTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCC---EEECCCC
T ss_pred EEcCCCCEEEEECccccccCCeEEEEee-eeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcc---eEEEEEE
Confidence 66778888888876400 11110000 0011112233 3 555665555555 8999999865321 1111111
Q ss_pred -------c---ccccEEEEEeecCCCEEEEEeC---------CCcEEEEcCCCccccccCccceEEeccccccccceeEE
Q 048511 220 -------G---HFAAVMDISWSRSSDYLLSVSH---------DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCV 280 (351)
Q Consensus 220 -------~---~~~~v~~v~~sp~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (351)
. .......++++|+++.++.+.. ++.+.++|+.+.+ .+.++... .....+
T Consensus 251 ~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~----------vv~~i~vg-~~p~gi 319 (368)
T 1mda_H 251 GNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ----------TSGPISNG-HDSDAI 319 (368)
T ss_dssp SSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC----------EEECCEEE-EEECEE
T ss_pred eccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe----------EEEEEECC-CCcceE
Confidence 0 1111222689999988876533 2356699998887 44444333 258899
Q ss_pred EEeeeCCCc-EEEEec-CCCeEEEEecC-chhhhcee
Q 048511 281 TIIQGKGNH-RFVSGA-DEKVARVFEAP-LSFLKTLN 314 (351)
Q Consensus 281 ~~~~~~~~~-~l~s~~-~dg~v~vw~~~-~~~~~~~~ 314 (351)
+|++ |++ ++++.. .++.|.++|+. .+.++++.
T Consensus 320 ~~s~--Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 320 IAAQ--DGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp EECC--SSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred EECC--CCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence 9999 776 567776 69999999987 66666654
No 212
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.17 E-value=9.6e-09 Score=86.40 Aligned_cols=229 Identities=11% Similarity=0.026 Sum_probs=137.2
Q ss_pred eeeecCCceeEEEeeCCcccCCCCCcc-EEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCce
Q 048511 24 ELKGHTDWIRSLDFSLPVCTSGEAISI-LLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSY 102 (351)
Q Consensus 24 ~~~~h~~~V~~l~~~~~~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 102 (351)
.+..+........|+ ++++ ++++...++.|..|+.. +.. ... .........+++.++|+++++.....
T Consensus 39 ~l~~~~~~~egp~~~--------~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~-~~~~~~~~gl~~d~dG~l~v~~~~~~ 107 (305)
T 3dr2_A 39 TLYDQATWSEGPAWW--------EAQRTLVWSDLVGRRVLGWRED-GTV-DVL-LDATAFTNGNAVDAQQRLVHCEHGRR 107 (305)
T ss_dssp EEECCCSSEEEEEEE--------GGGTEEEEEETTTTEEEEEETT-SCE-EEE-EESCSCEEEEEECTTSCEEEEETTTT
T ss_pred EEecCCcCccCCeEe--------CCCCEEEEEECCCCEEEEEeCC-CCE-EEE-eCCCCccceeeECCCCCEEEEECCCC
Confidence 334445567789999 7787 66777788999999874 332 212 22234567888999999777654433
Q ss_pred eEEEEE------ec----ccc-ccceEEEEecCCCCCCCCCcccCCCceeEE----eec-------------CCeEEEEe
Q 048511 103 QVSVES------LL----IGH-EDWVYSVQWEPPSTAPSDGVSCQQPSSILS----ASM-------------DKTMMIWQ 154 (351)
Q Consensus 103 ~~~~~~------~~----~~h-~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s----~~~-------------d~~i~iwd 154 (351)
.+..+. .+ .+. ...+..+++. ++|++ +++ |.. .+.|..||
T Consensus 108 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~i~~d------~dG~l------~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d 175 (305)
T 3dr2_A 108 AITRSDADGQAHLLVGRYAGKRLNSPNDLIVA------RDGAI------WFTDPPFGLRKPSQGCPADPELAHHSVYRLP 175 (305)
T ss_dssp EEEEECTTSCEEEEECEETTEECSCCCCEEEC------TTSCE------EEECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred EEEEECCCCCEEEEEeccCCCccCCCCCEEEC------CCCCE------EEeCcCCCccccccccccccccCCCeEEEEc
Confidence 332221 11 111 1235678888 78887 776 332 24577777
Q ss_pred ccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC------CeEEEEEcccCcccCcccccccccccccEEEE
Q 048511 155 PEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG------GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDI 228 (351)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v 228 (351)
..+ +....... ......++|+|+++.|+++... +.|.+|++.............. ....+..+
T Consensus 176 ~~~--g~~~~~~~-------~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~--~~~~pdgi 244 (305)
T 3dr2_A 176 PDG--SPLQRMAD-------LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV--PDGLPDGF 244 (305)
T ss_dssp SSS--CCCEEEEE-------ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC--SSSCCCSE
T ss_pred CCC--CcEEEEec-------CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC--CCCCCCeE
Confidence 655 43322111 1235789999999988877765 7899999875421000111111 23345678
Q ss_pred EeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEE
Q 048511 229 SWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARV 302 (351)
Q Consensus 229 ~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~v 302 (351)
++.++|++.++ +.+ .|.+|+.. ++ .+..+..+. .+.+++|.+ +++.|..++.++..++
T Consensus 245 ~~d~~G~lwv~-~~~-gv~~~~~~-g~----------~~~~~~~~~-~~~~~~f~~--d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 245 CVDRGGWLWSS-SGT-GVCVFDSD-GQ----------LLGHIPTPG-TASNCTFDQ--AQQRLFITGGPCLWML 302 (305)
T ss_dssp EECTTSCEEEC-CSS-EEEEECTT-SC----------EEEEEECSS-CCCEEEECT--TSCEEEEEETTEEEEE
T ss_pred EECCCCCEEEe-cCC-cEEEECCC-CC----------EEEEEECCC-ceeEEEEeC--CCCEEEEEcCCeEEEE
Confidence 99999995554 444 49999984 33 122222222 488899997 7777777666655444
No 213
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.16 E-value=4.6e-09 Score=98.65 Aligned_cols=241 Identities=12% Similarity=0.027 Sum_probs=142.0
Q ss_pred ecCCceeEEEeeCCcccCCCCCccEEEEe-----eCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCc
Q 048511 27 GHTDWIRSLDFSLPVCTSGEAISILLVSS-----SQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSS 101 (351)
Q Consensus 27 ~h~~~V~~l~~~~~~~~~~~~~~~~l~t~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 101 (351)
+|...+..++|+ |++++||-+ +.+.+|++||+.+++.+...... .....++|+ |++.|+....+
T Consensus 126 ~~~~~l~~~~~S--------pDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~ 194 (693)
T 3iuj_A 126 DGTTALDQLSFS--------RDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYD 194 (693)
T ss_dssp TSCCEEEEEEEC--------TTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESS
T ss_pred CCcEEEEEEEEC--------CCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEec
Confidence 355578889999 889988843 33357999999998754432211 113577899 99877765433
Q ss_pred -------------eeEEEEEe------------ccc-cccceEEEEecCCCCCCCCCcccCCCceeEEeec----CCeEE
Q 048511 102 -------------YQVSVESL------------LIG-HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM----DKTMM 151 (351)
Q Consensus 102 -------------~~~~~~~~------------~~~-h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~----d~~i~ 151 (351)
..+..+.. ... |...+..+.|+ +|+++ |+.... ++.|.
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S------pDg~~------l~~~~~~~~~~~~i~ 262 (693)
T 3iuj_A 195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT------EDDRF------LLISAANSTSGNRLY 262 (693)
T ss_dssp CCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC------TTSCE------EEEEEESSSSCCEEE
T ss_pred CcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc------CCCCE------EEEEEccCCCCcEEE
Confidence 12333221 112 33356788999 78887 654432 35899
Q ss_pred EEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-eC---CeEEEEEcccCcccCcccccccccccccEEE
Q 048511 152 IWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-YG---GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD 227 (351)
Q Consensus 152 iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d---g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~ 227 (351)
++|+...+.... .+. .+....... +++++..|+..+ .+ +.|..+|+.++.... ...+..|...+.
T Consensus 263 ~~d~~~~~~~~~-~l~-----~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~---~~~l~~~~~~~~- 331 (693)
T 3iuj_A 263 VKDLSQENAPLL-TVQ-----GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAH---WRDLIPERQQVL- 331 (693)
T ss_dssp EEETTSTTCCCE-EEE-----CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGG---CEEEECCCSSCE-
T ss_pred EEECCCCCCceE-EEe-----CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccc---cEEEecCCCCEE-
Confidence 999987332332 232 223333443 566666555444 33 689999998764211 234445555554
Q ss_pred EEeecCCCEEEEEeC-CC--cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC----CeE
Q 048511 228 ISWSRSSDYLLSVSH-DQ--TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE----KVA 300 (351)
Q Consensus 228 v~~sp~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d----g~v 300 (351)
.|++++++|+.... ++ .|++||+..+. ...+.. .....+..+.+++ ++..|+....+ +.+
T Consensus 332 -~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~--------~~~l~~--p~~~~~~~~~~~~--d~~~l~~~~ss~~tP~~l 398 (693)
T 3iuj_A 332 -TVHSGSGYLFAEYMVDATARVEQFDYEGKR--------VREVAL--PGLGSVSGFNGKH--DDPALYFGFENYAQPPTL 398 (693)
T ss_dssp -EEEEETTEEEEEEEETTEEEEEEECTTSCE--------EEEECC--SSSSEEEECCCCT--TCSCEEEEEECSSSCCEE
T ss_pred -EEEEECCEEEEEEEECCeeEEEEEECCCCe--------eEEeec--CCCceEEeeecCC--CCCEEEEEecCCCCCCEE
Confidence 88999988876654 43 68999987443 112211 1223466666766 55555443333 789
Q ss_pred EEEecCchhhhcee
Q 048511 301 RVFEAPLSFLKTLN 314 (351)
Q Consensus 301 ~vw~~~~~~~~~~~ 314 (351)
..||+.+.....+.
T Consensus 399 ~~~d~~~g~~~~l~ 412 (693)
T 3iuj_A 399 YRFEPKSGAISLYR 412 (693)
T ss_dssp EEECTTTCCEEEEE
T ss_pred EEEECCCCeEEEEE
Confidence 99998643333333
No 214
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.15 E-value=8.4e-08 Score=82.89 Aligned_cols=221 Identities=7% Similarity=-0.081 Sum_probs=125.9
Q ss_pred CCceEEEEEccCCCceEEEEeeeec-------CCceeEEEeeCCcccCCCCCccEEEEeeC--CCcEEEEecCCCcccce
Q 048511 4 LDNKIHLYRGQRTGKFVRACELKGH-------TDWIRSLDFSLPVCTSGEAISILLVSSSQ--DKVIRIWKLALRGSSAN 74 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~~~~~~~~~h-------~~~V~~l~~~~~~~~~~~~~~~~l~t~~~--dg~i~iwd~~~~~~~~~ 74 (351)
.++.|.+||..+ .+. +..+.-- ...-..+.|+ +++++|+.+.. ++.|.++| .+++....
T Consensus 95 ~~~~v~viD~~t-~~~--~~~i~~~~~~~~~~g~~p~~~~~s--------pDG~~l~v~n~~~~~~v~viD-~t~~~~~~ 162 (373)
T 2mad_H 95 RTDYVEVFDPVT-FLP--IADIELPDAPRFDVGPYSWMNANT--------PNNADLLFFQFAAGPAVGLVV-QGGSSDDQ 162 (373)
T ss_pred CCCeEEEEECCC-CcE--EEEEECCCccccccCCCccceEEC--------CCCCEEEEEecCCCCeEEEEE-CCCCEEeE
Confidence 467899999987 533 3333211 1234578999 88999998874 57899999 88766544
Q ss_pred -eecccc------cceeeeEeeecCCeEEecCCceeEEEEEe---ccccccce-EEEEecCCCCCCCCCcccCCCceeEE
Q 048511 75 -TQSTYR------KEVISLASYIEGPVLVAGSSSYQVSVESL---LIGHEDWV-YSVQWEPPSTAPSDGVSCQQPSSILS 143 (351)
Q Consensus 75 -~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~h~~~v-~~l~~~p~~~~~~~~~~~~~~~~l~s 143 (351)
+..... ....-+..+++|..++... .+....... ......++ ....+. +++.. ++.
T Consensus 163 ~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~------~~~~~------~~~ 229 (373)
T 2mad_H 163 LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQA------NKSGR------IVW 229 (373)
T ss_pred EcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeE------ecCCE------EEE
Confidence 332110 0001122333444433333 222110000 00011111 122334 33333 344
Q ss_pred eecCCeEEEEeccCCCcceEEEEEecc-----ccccccceEEEEEcCCCCEEEEEee----------CCeEEEEEcccCc
Q 048511 144 ASMDKTMMIWQPEKTTGIWMNVVTVGE-----LSHSALGFYGGHWSPDGRSILAHGY----------GGAFHLWRNVGVD 208 (351)
Q Consensus 144 ~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~i~~i~~~~~~~~l~~~~~----------dg~i~~~d~~~~~ 208 (351)
.+..+.+.+.|+.......+..+.+.. ..........+.++|+++.++++.. ++.|.++|+.+.
T Consensus 230 ~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~- 308 (373)
T 2mad_H 230 PVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG- 308 (373)
T ss_pred EcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC-
Confidence 446789999999763223333332111 0011223445789999998887653 358999999886
Q ss_pred ccCcccccccccccccEEEEEeecCCC-EEEEEe-CCCcEEEEcCCCcc
Q 048511 209 IDNWQPQKVPSGHFAAVMDISWSRSSD-YLLSVS-HDQTTRVFAPWKNV 255 (351)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~-~dg~i~vwd~~~~~ 255 (351)
+.+.++.. ......+.|+|||+ +++++. .++.|.++|..+.+
T Consensus 309 ----~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 309 ----QTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred ----EEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 34555542 33578999999999 777776 48999999998887
No 215
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.14 E-value=5.8e-09 Score=89.30 Aligned_cols=228 Identities=10% Similarity=0.012 Sum_probs=136.6
Q ss_pred CceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEee--CCCcEEEEecCCCcccceeecccccceeeeEeeecCCe
Q 048511 17 GKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSS--QDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPV 94 (351)
Q Consensus 17 ~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (351)
++++.+..+. ..+..|+++ ++++++++.. .++.++||.+.++. +... |+..
T Consensus 7 g~~~~v~~~~---~~p~~va~~--------~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~--------------p~~~- 59 (343)
T 2qe8_A 7 DRLEVVAELS---LAPGNITLT--------PDGRLFLSLHQFYQPEMQVAELTQDG-LIPF--------------PPQS- 59 (343)
T ss_dssp -CCEEEEEES---SCEEEEEEC--------TTSCEEEEECGGGCCSCSEEEEETTE-EEES--------------CCCC-
T ss_pred ceeEEEEEcC---CCcceEEEC--------CCCCEEEEeCCCCCCceEEEEECCCC-eecC--------------CCcc-
Confidence 4445555544 678999999 8899988864 23436677665221 1100 0000
Q ss_pred EEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec-----CCeEEEEeccCCCcceEEEEEec
Q 048511 95 LVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM-----DKTMMIWQPEKTTGIWMNVVTVG 169 (351)
Q Consensus 95 l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~ 169 (351)
.....|...+..+++. +++++ +++-.. +..|.+||+.+ ++.+..+.+.
T Consensus 60 -------------~~~~~~~~~p~gv~~d------~~g~L------~v~D~g~~~~~~~~i~~~d~~t--g~~~~~~~~~ 112 (343)
T 2qe8_A 60 -------------GNAIITFDTVLGIKSD------GNGIV------WMLDNGNQSKSVPKLVAWDTLN--NQLSRVIYLP 112 (343)
T ss_dssp -------------SSCCCCCSCEEEEEEC------SSSEE------EEEECHHHHTSCCEEEEEETTT--TEEEEEEECC
T ss_pred -------------cCcccceeEeeEEEEc------CCCcE------EEEcCCCCcCCCCeEEEEECCC--CeEEEEEECC
Confidence 0012355679999999 67776 665544 57899999988 7666666542
Q ss_pred c-ccccccceEEEEEcCCCCEE-EEEe---eCCeEEEEEcccCcccCcccccccccc-----------------------
Q 048511 170 E-LSHSALGFYGGHWSPDGRSI-LAHG---YGGAFHLWRNVGVDIDNWQPQKVPSGH----------------------- 221 (351)
Q Consensus 170 ~-~~~~~~~i~~i~~~~~~~~l-~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~~~----------------------- 221 (351)
. ...+...+..+++++++..+ ++-. .++.|.+||+.+++. ...+.+|
T Consensus 113 ~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~-----~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 187 (343)
T 2qe8_A 113 PPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA-----ARVLQGYPGIAPEDIDLVIDGVPVQIGQPD 187 (343)
T ss_dssp TTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE-----EEECTTCTTTSCCSCCCEETTEECBEECTT
T ss_pred hhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE-----EEEecCCCcccccccceeECCEEEEeccCC
Confidence 1 11223456889999865555 4444 578999999876532 1111110
Q ss_pred ------cccEEEEEeecCCCEEEEEeCCC-cEEEEcCCC---ccccccCccceEEeccccccccceeEEEEeeeCCCcEE
Q 048511 222 ------FAAVMDISWSRSSDYLLSVSHDQ-TTRVFAPWK---NVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRF 291 (351)
Q Consensus 222 ------~~~v~~v~~sp~~~~l~s~~~dg-~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 291 (351)
...+..|+|+|+++.|+.+..++ .+..++... ..... ...+..+. ..++......+++++ ++.++
T Consensus 188 g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~-~~g~~g~pdgia~d~--~G~l~ 262 (343)
T 2qe8_A 188 GTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTD--AELGSKIE-RYSEKPICDGISIDK--DHNIY 262 (343)
T ss_dssp SCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCH--HHHHTTCE-EEEECCSCSCEEECT--TCCEE
T ss_pred CceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCCh--hhhhcceE-ecccCCCCceEEECC--CCCEE
Confidence 12368899999999888877665 444444311 10000 00000000 012223466789998 89999
Q ss_pred EEecCCCeEEEEec-Cch
Q 048511 292 VSGADEKVARVFEA-PLS 308 (351)
Q Consensus 292 ~s~~~dg~v~vw~~-~~~ 308 (351)
++...++.|.+||. .++
T Consensus 263 va~~~~~~V~~~d~~~G~ 280 (343)
T 2qe8_A 263 VGDLAHSAIGVITSADRA 280 (343)
T ss_dssp EEEGGGTEEEEEETTTTE
T ss_pred EEccCCCeEEEEECCCCC
Confidence 99999999999998 565
No 216
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.14 E-value=1.1e-08 Score=96.86 Aligned_cols=236 Identities=14% Similarity=0.094 Sum_probs=137.9
Q ss_pred CCccEEEEeeCCCc---EEEEecCC----Ccccceeec------ccccceeeeEeeecCCeEEecCCc-----eeEEEEE
Q 048511 47 AISILLVSSSQDKV---IRIWKLAL----RGSSANTQS------TYRKEVISLASYIEGPVLVAGSSS-----YQVSVES 108 (351)
Q Consensus 47 ~~~~~l~t~~~dg~---i~iwd~~~----~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~ 108 (351)
++|++++....++. -.+|.... +.....+.. ..........|+|||+.++.+... ..+.++.
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 56777776654433 55665542 122121111 111245678999999998875332 4455544
Q ss_pred ecccc-----ccc--eEEEEecCCCCCCCCCcccCCCceeEEeecCCe--------------EEEEeccCCCcceEEEEE
Q 048511 109 LLIGH-----EDW--VYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT--------------MMIWQPEKTTGIWMNVVT 167 (351)
Q Consensus 109 ~~~~h-----~~~--v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~--------------i~iwd~~~~~~~~~~~~~ 167 (351)
.-.+. ... +..++|+ +| +. |+.++.++. |++|++.+........+.
T Consensus 196 l~tg~~~~~~~~~~~~~~~~ws------pD-~~------l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~ 262 (741)
T 1yr2_A 196 VADGKPLADELKWVKFSGLAWL------GN-DA------LLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA 262 (741)
T ss_dssp TTTCCEEEEEEEEEESCCCEES------TT-SE------EEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC
T ss_pred CCCCCCCCccCCCceeccEEEE------CC-CE------EEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec
Confidence 32221 111 2467899 67 77 777776554 889998763221111111
Q ss_pred eccccccccceEEEEEcCCCCEEEEEeeCC-----eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC
Q 048511 168 VGELSHSALGFYGGHWSPDGRSILAHGYGG-----AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH 242 (351)
Q Consensus 168 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~ 242 (351)
...+...+..+.|+|+|++|+..+.++ .|++||+.++.. .+...+..+...+... ++|+++.|+..+.
T Consensus 263 ---~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~---~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~ 335 (741)
T 1yr2_A 263 ---TPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI---GPVTALIPDLKAQWDF-VDGVGDQLWFVSG 335 (741)
T ss_dssp ---CTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE---CCCEEEECSSSSCEEE-EEEETTEEEEEEC
T ss_pred ---cCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC---cccEEecCCCCceEEE-EeccCCEEEEEEC
Confidence 122333588999999999998887654 899999987521 1023333444444444 3588888877765
Q ss_pred ----CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec--Cchhhhce
Q 048511 243 ----DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA--PLSFLKTL 313 (351)
Q Consensus 243 ----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~--~~~~~~~~ 313 (351)
++.|.+||+.++. ..|..+. ..+...+..+++.. +.++++...|+..+||.+ .++..+.+
T Consensus 336 ~~~~~~~l~~~d~~~~~------~~~~~l~--~~~~~~l~~~~~~~---~~lv~~~~~dg~~~l~~~~~~g~~~~~l 401 (741)
T 1yr2_A 336 DGAPLKKIVRVDLSGST------PRFDTVV--PESKDNLESVGIAG---NRLFASYIHDAKSQVLAFDLDGKPAGAV 401 (741)
T ss_dssp TTCTTCEEEEEECSSSS------CEEEEEE--CCCSSEEEEEEEEB---TEEEEEEEETTEEEEEEEETTSCEEEEC
T ss_pred CCCCCCEEEEEeCCCCc------cccEEEe--cCCCCeEEEEEEEC---CEEEEEEEECCEEEEEEEeCCCCceeec
Confidence 3459999987641 0233332 23334466777764 778889999998887764 45444433
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.14 E-value=2.2e-08 Score=84.99 Aligned_cols=206 Identities=8% Similarity=-0.030 Sum_probs=126.1
Q ss_pred eeEEEeeCCcccCCCCC-ccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEec
Q 048511 32 IRSLDFSLPVCTSGEAI-SILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLL 110 (351)
Q Consensus 32 V~~l~~~~~~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 110 (351)
..+..|+ ++ +.++++...++.|..||..++... . +
T Consensus 51 ~egp~~~--------~~~~~l~~~d~~~~~i~~~d~~~~~~~---------------------------------~---~ 86 (326)
T 2ghs_A 51 GEGPTFD--------PASGTAWWFNILERELHELHLASGRKT---------------------------------V---H 86 (326)
T ss_dssp EEEEEEE--------TTTTEEEEEEGGGTEEEEEETTTTEEE---------------------------------E---E
T ss_pred CcCCeEe--------CCCCEEEEEECCCCEEEEEECCCCcEE---------------------------------E---E
Confidence 3567788 54 556666667788988888754321 0 0
Q ss_pred cccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEE
Q 048511 111 IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSI 190 (351)
Q Consensus 111 ~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 190 (351)
. ....+.++.+. +++++ +++. . ..|.+||..+ +........ ........+..++++|+|+++
T Consensus 87 ~-~~~~v~~i~~~------~dg~l------~v~~-~-~gl~~~d~~~--g~~~~~~~~-~~~~~~~~~~~i~~d~~G~l~ 148 (326)
T 2ghs_A 87 A-LPFMGSALAKI------SDSKQ------LIAS-D-DGLFLRDTAT--GVLTLHAEL-ESDLPGNRSNDGRMHPSGALW 148 (326)
T ss_dssp E-CSSCEEEEEEE------ETTEE------EEEE-T-TEEEEEETTT--CCEEEEECS-STTCTTEEEEEEEECTTSCEE
T ss_pred E-CCCcceEEEEe------CCCeE------EEEE-C-CCEEEEECCC--CcEEEEeeC-CCCCCCCCCCCEEECCCCCEE
Confidence 0 23468899999 67776 6654 3 4499999877 443322111 001112458899999999966
Q ss_pred EEEeeC------CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE-eCCCcEEEEcCC--Cc-cccccC
Q 048511 191 LAHGYG------GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV-SHDQTTRVFAPW--KN-VASLMG 260 (351)
Q Consensus 191 ~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~-~~dg~i~vwd~~--~~-~~~~~~ 260 (351)
++...+ +.|..++ +++ ...+..+......++|+|+++.|+.+ +.++.|.+||+. ++ ...
T Consensus 149 v~~~~~~~~~~~~~l~~~~--~g~------~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~--- 217 (326)
T 2ghs_A 149 IGTMGRKAETGAGSIYHVA--KGK------VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG--- 217 (326)
T ss_dssp EEEEETTCCTTCEEEEEEE--TTE------EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS---
T ss_pred EEeCCCcCCCCceEEEEEe--CCc------EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc---
Confidence 654432 4555555 332 12222233456789999999876544 557899999986 44 210
Q ss_pred ccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhcee
Q 048511 261 ENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLN 314 (351)
Q Consensus 261 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 314 (351)
....+..+......+..+++.+ ++.+.++...++.|.+|+..++.+..+.
T Consensus 218 --~~~~~~~~~~~~~~p~gi~~d~--~G~lwva~~~~~~v~~~d~~g~~~~~i~ 267 (326)
T 2ghs_A 218 --KAEVFIDSTGIKGGMDGSVCDA--EGHIWNARWGEGAVDRYDTDGNHIARYE 267 (326)
T ss_dssp --CCEEEEECTTSSSEEEEEEECT--TSCEEEEEETTTEEEEECTTCCEEEEEE
T ss_pred --CceEEEECCCCCCCCCeeEECC--CCCEEEEEeCCCEEEEECCCCCEEEEEE
Confidence 0011222222234467888888 7888887777789999998776655544
No 218
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.11 E-value=2.9e-08 Score=85.92 Aligned_cols=227 Identities=10% Similarity=0.039 Sum_probs=135.3
Q ss_pred CCCCceEEEEEccC-CCceEEEEeee------e-cCCceeEEEeeCCcccCCCCCccEEEEeeCC------CcEEEEecC
Q 048511 2 GGLDNKIHLYRGQR-TGKFVRACELK------G-HTDWIRSLDFSLPVCTSGEAISILLVSSSQD------KVIRIWKLA 67 (351)
Q Consensus 2 g~~dg~i~vw~~~~-~~~~~~~~~~~------~-h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d------g~i~iwd~~ 67 (351)
|..+++|+|+|+.+ ..+++...+++ . -...-..+... +++ +++++..+ +.|.+.|..
T Consensus 102 ~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~--------pdG-i~Vs~~g~~~g~~~g~v~vlD~~ 172 (462)
T 2ece_A 102 GLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCG--------PDA-IYISALGNEEGEGPGGILMLDHY 172 (462)
T ss_dssp BTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEEC--------SSC-EEEEEEEETTSCSCCEEEEECTT
T ss_pred cCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeEC--------CCe-EEEEcCCCcCCCCCCeEEEEECC
Confidence 55678999999874 24445555552 0 11134456677 778 77776555 789999998
Q ss_pred CCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEee--
Q 048511 68 LRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS-- 145 (351)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~-- 145 (351)
+.+........... ...-+.+-|+ ++++. +++..
T Consensus 173 T~~v~~~~~~~~~~--------------------------------~~~~Yd~~~~------p~~~~------mvsS~wg 208 (462)
T 2ece_A 173 SFEPLGKWEIDRGD--------------------------------QYLAYDFWWN------LPNEV------LVSSEWA 208 (462)
T ss_dssp TCCEEEECCSBCTT--------------------------------CCCCCCEEEE------TTTTE------EEECBCC
T ss_pred CCeEEEEEccCCCC--------------------------------ccccceEEEC------CCCCE------EEEccCc
Confidence 87765444322110 1112245555 45554 55553
Q ss_pred -----------------cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEE--cCCCCEEEEEee------CCeEE
Q 048511 146 -----------------MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHW--SPDGRSILAHGY------GGAFH 200 (351)
Q Consensus 146 -----------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~--~~~~~~l~~~~~------dg~i~ 200 (351)
.+.+|.+||+.+ ++.+.++.+.. .......+.| +|+++++++++. +++|.
T Consensus 209 ~p~~~~~g~~~~~~~~~~~d~V~v~D~~~--~k~~~tI~vg~---~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~ 283 (462)
T 2ece_A 209 VPNTIEDGLKLEHLKDRYGNRIHFWDLRK--RKRIHSLTLGE---ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIW 283 (462)
T ss_dssp CHHHHTTCCCTTTHHHHSCCEEEEEETTT--TEEEEEEESCT---TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEE
T ss_pred CccccccccchhhhhhccCCEEEEEECCC--CcEeeEEecCC---CCCccceeEeeECCCCCEEEEEEeeeccCCCceEE
Confidence 478999999998 67777766421 1223445555 999998888775 56887
Q ss_pred EEEcccCcccCccc--------cccc-------ccccccEEEEEeecCCCEEEEEeC-CCcEEEEcCCCccccccCccce
Q 048511 201 LWRNVGVDIDNWQP--------QKVP-------SGHFAAVMDISWSRSSDYLLSVSH-DQTTRVFAPWKNVASLMGENSW 264 (351)
Q Consensus 201 ~~d~~~~~~~~~~~--------~~~~-------~~~~~~v~~v~~sp~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~ 264 (351)
+|..+.+.....+. ...+ .+-......|.++||+++|.++.. .+.|.+||+.... ..
T Consensus 284 v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~-------~~ 356 (462)
T 2ece_A 284 LWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPF-------KP 356 (462)
T ss_dssp EEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTT-------SC
T ss_pred EEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCC-------Cc
Confidence 76664432100000 0001 001245778999999999877665 7899999986432 11
Q ss_pred EEecccccc--------------ccceeEEEEeeeCCCcEEEEec
Q 048511 265 HEVARPQVH--------------GHDINCVTIIQGKGNHRFVSGA 295 (351)
Q Consensus 265 ~~~~~~~~~--------------~~~i~~~~~~~~~~~~~l~s~~ 295 (351)
+.+...... ......+++++ ||++|+++.
T Consensus 357 ~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp--DGk~LyVaN 399 (462)
T 2ece_A 357 VLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR--DGRRVYVTN 399 (462)
T ss_dssp EEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT--TSSEEEEEC
T ss_pred EEEEEEEeCCeeccccccccccCCCCCCEEEEcC--CCCEEEEEc
Confidence 122221111 01357899999 888887776
No 219
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.09 E-value=1.1e-08 Score=87.76 Aligned_cols=223 Identities=5% Similarity=-0.040 Sum_probs=134.8
Q ss_pred CCceEEEEEccCCCceEEEEeeeec-------CCceeEEEeeCCcccCCCCCccEEEEeeC--CCcEEEEecCCCcccce
Q 048511 4 LDNKIHLYRGQRTGKFVRACELKGH-------TDWIRSLDFSLPVCTSGEAISILLVSSSQ--DKVIRIWKLALRGSSAN 74 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~~~~~~~~~h-------~~~V~~l~~~~~~~~~~~~~~~~l~t~~~--dg~i~iwd~~~~~~~~~ 74 (351)
.++.|.+||..+ .+. +.++.-- ...-..+.|+ ++|++|+.+.. ++.|.++|+.+.+....
T Consensus 107 ~~~~VsviD~~t-~~v--~~~I~v~~g~r~~~g~~P~~~a~s--------pDGk~lyVan~~~~~~VsVID~~t~~vv~t 175 (386)
T 3sjl_D 107 RTDYVEVFDPVT-LLP--TADIELPDAPRFLVGTYPWMTSLT--------PDGKTLLFYQFSPAPAVGVVDLEGKAFKRM 175 (386)
T ss_dssp EEEEEEEECTTT-CCE--EEEEEETTCCCCCBSCCGGGEEEC--------TTSSEEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred CCCEEEEEECCC-CeE--EEEEECCCccccccCCCCceEEEc--------CCCCEEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 367899999998 643 3343311 1245679999 88999888764 68999999999887666
Q ss_pred eecccc------cceeeeEeeecCCeEEecCCc-eeEEEEEe--ccccccceE-EEEecCCCCCCCCCcccCCCceeEEe
Q 048511 75 TQSTYR------KEVISLASYIEGPVLVAGSSS-YQVSVESL--LIGHEDWVY-SVQWEPPSTAPSDGVSCQQPSSILSA 144 (351)
Q Consensus 75 ~~~~~~------~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~--~~~h~~~v~-~l~~~p~~~~~~~~~~~~~~~~l~s~ 144 (351)
+..... ....-+..+++|+++.+.... +.+..... +.....++. ...|.+ +++++ ++ .
T Consensus 176 I~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~-----~dG~~------~~-v 243 (386)
T 3sjl_D 176 LDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ-----KAGRL------VW-P 243 (386)
T ss_dssp EECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEET-----TTTEE------EE-E
T ss_pred EECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEc-----CCCcE------EE-E
Confidence 543211 011123566777776665443 33311110 000011111 123332 45654 44 5
Q ss_pred ecCCeEEEEeccCCCcceEEEEEeccc-----cccccceEEEEEcCCCCEEEEEee----------CCeEEEEEcccCcc
Q 048511 145 SMDKTMMIWQPEKTTGIWMNVVTVGEL-----SHSALGFYGGHWSPDGRSILAHGY----------GGAFHLWRNVGVDI 209 (351)
Q Consensus 145 ~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~i~~i~~~~~~~~l~~~~~----------dg~i~~~d~~~~~~ 209 (351)
+.+|.|.+.|+..........+.+... .-....+..++++++++.+++... .+.|.++|+.+.
T Consensus 244 s~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~-- 321 (386)
T 3sjl_D 244 TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG-- 321 (386)
T ss_dssp BTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC--
T ss_pred eCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC--
Confidence 568999999997632233333321100 011123335777999998888754 257999999887
Q ss_pred cCcccccccccccccEEEEEeecCCC-EEEEE-eCCCcEEEEcCCCcc
Q 048511 210 DNWQPQKVPSGHFAAVMDISWSRSSD-YLLSV-SHDQTTRVFAPWKNV 255 (351)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~-~~dg~i~vwd~~~~~ 255 (351)
+.+..+.. ...+.+|.+++|++ +|++. ..++.|.++|..+++
T Consensus 322 ---kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 322 ---ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp ---CEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred ---eEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 44555542 24688999999996 66664 458999999998887
No 220
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.08 E-value=2.9e-09 Score=91.17 Aligned_cols=216 Identities=6% Similarity=-0.012 Sum_probs=126.6
Q ss_pred ecCCceeEEEeeCCcccCCCCCccEEEEeeC-----CCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCc
Q 048511 27 GHTDWIRSLDFSLPVCTSGEAISILLVSSSQ-----DKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSS 101 (351)
Q Consensus 27 ~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 101 (351)
+|-..+..|++. ++++++++-.. ++.|.+||+.+++.........
T Consensus 64 ~~~~~p~gv~~d--------~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~---------------------- 113 (343)
T 2qe8_A 64 ITFDTVLGIKSD--------GNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPP---------------------- 113 (343)
T ss_dssp CCCSCEEEEEEC--------SSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCT----------------------
T ss_pred cceeEeeEEEEc--------CCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECCh----------------------
Confidence 355689999999 77876665433 5789999998775433222100
Q ss_pred eeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEee---cCCeEEEEeccCCCcceEEEEEec-c-------
Q 048511 102 YQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS---MDKTMMIWQPEKTTGIWMNVVTVG-E------- 170 (351)
Q Consensus 102 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~-~------- 170 (351)
....+...+..+++.| .++.. +++-. .++.|.+||+.+ +.....+... .
T Consensus 114 -------~~~~~~~~~~~v~vd~-----~~g~~------yvtd~~~~~~~~i~v~d~~~--g~~~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 114 -------PITLSNSFVNDLAVDL-----IHNFV------YISDPAPDDKAALIRVDLQT--GLAARVLQGYPGIAPEDID 173 (343)
T ss_dssp -------TTSCTTCCCCEEEEET-----TTTEE------EEEECCSGGGCEEEEEETTT--CCEEEECTTCTTTSCCSCC
T ss_pred -------hhcccccccceEEEec-----CCCEE------EEEcCccCCCCeEEEEECCC--CCEEEEecCCCcccccccc
Confidence 0011233456777773 23444 55555 677888888876 4333222100 0
Q ss_pred --ccc--------------cccceEEEEEcCCCCEEEEEeeCC-eEEEEEcccCcc---cCccccc--ccccccccEEEE
Q 048511 171 --LSH--------------SALGFYGGHWSPDGRSILAHGYGG-AFHLWRNVGVDI---DNWQPQK--VPSGHFAAVMDI 228 (351)
Q Consensus 171 --~~~--------------~~~~i~~i~~~~~~~~l~~~~~dg-~i~~~d~~~~~~---~~~~~~~--~~~~~~~~v~~v 228 (351)
..+ ....+..++|+|+++.|+.+..++ .+..++...... ....... ...++......+
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgi 253 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGI 253 (343)
T ss_dssp CEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCE
T ss_pred eeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceE
Confidence 000 012367899999999888887765 555555421100 0000011 111334456779
Q ss_pred EeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEE
Q 048511 229 SWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVF 303 (351)
Q Consensus 229 ~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw 303 (351)
+++++|.++++...++.|.+||..+++ +..+... .+...++.++|.+ ++.++++.+..+.+-+|
T Consensus 254 a~d~~G~l~va~~~~~~V~~~d~~~G~--------~~~~~~~-~~~~~p~~va~~~--~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 254 SIDKDHNIYVGDLAHSAIGVITSADRA--------YKLLVTD-EKLSWTDSFNFGS--DGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp EECTTCCEEEEEGGGTEEEEEETTTTE--------EEEEEEC-GGGSCEEEEEECT--TSCEEEEECCGGGSGGG
T ss_pred EECCCCCEEEEccCCCeEEEEECCCCC--------EEEEEEC-CceecCCeeEECC--CCcEEEEeCcccccccc
Confidence 999999999988889999999984443 1122211 1234578999988 78888887755544333
No 221
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.08 E-value=2.2e-11 Score=105.42 Aligned_cols=188 Identities=11% Similarity=0.005 Sum_probs=97.7
Q ss_pred CCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCC
Q 048511 47 AISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPS 126 (351)
Q Consensus 47 ~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 126 (351)
-++..+++++.|+.|..||..+++....... +.+.+..+.
T Consensus 7 v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-------------------------------------~~~~s~p~~--- 46 (369)
T 2hz6_A 7 LPETLLFVSTLDGSLHAVSKRTGSIKWTLKE-------------------------------------DPVLQVPTH--- 46 (369)
T ss_dssp -CTTEEEEEETTSEEEEEETTTCCEEEEEEC-------------------------------------CCSCCCC-----
T ss_pred eeCCEEEEEcCCCEEEEEECCCCCEEEEecC-------------------------------------CCceecceE---
Confidence 3577899999999999999998876543321 122222333
Q ss_pred CCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceE-EEEEcCCCCEEEEEeeCCeEEEEEcc
Q 048511 127 TAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFY-GGHWSPDGRSILAHGYGGAFHLWRNV 205 (351)
Q Consensus 127 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~-~i~~~~~~~~l~~~~~dg~i~~~d~~ 205 (351)
.++.+ +++++.|+.|+.||.++ ++.+....... ...+. +..+. .+..+++++.++.|+.||..
T Consensus 47 ---~~g~~------~v~~s~dg~l~a~d~~t--G~~~w~~~~~~----~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~ 110 (369)
T 2hz6_A 47 ---VEEPA------FLPDPNDGSLYTLGSKN--NEGLTKLPFTI----PELVQASPCRS-SDGILYMGKKQDIWYVIDLL 110 (369)
T ss_dssp ------CC------EEECTTTCCEEEC-------CCSEECSCCH----HHHHTTCSCC------CCCCEEEEEEEEECCC
T ss_pred ---cCCCE------EEEeCCCCEEEEEECCC--CceeeeeeccC----ccccccCceEe-cCCEEEEEeCCCEEEEEECC
Confidence 45666 88888999999999988 44332222110 00010 00111 34567888899999999999
Q ss_pred cCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeee
Q 048511 206 GVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQG 285 (351)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 285 (351)
+++ .+..+..+. ...++|++..+++++.|+.|+.||.++++ ..|..-. +. ....++..
T Consensus 111 tG~-----~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~------~~W~~~~----~~--~~~~~~~~- 168 (369)
T 2hz6_A 111 TGE-----KQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRE------LRWNATY----FD--YAASLPED- 168 (369)
T ss_dssp -------------------------------EEEEEEEEEEECCCSSSSS------CCCEEEE----EE--ECCBCCCC-
T ss_pred CCc-----EEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCC------EEEeEec----cc--ccCccccC-
Confidence 884 333443332 23456788889999999999999999887 2343211 10 12222322
Q ss_pred CCC---cEEEEecCCCeEEEEecC-chhhhce
Q 048511 286 KGN---HRFVSGADEKVARVFEAP-LSFLKTL 313 (351)
Q Consensus 286 ~~~---~~l~s~~~dg~v~vw~~~-~~~~~~~ 313 (351)
+. ..+++++.||.|+.||.. ++.+..+
T Consensus 169 -~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 199 (369)
T 2hz6_A 169 -DVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ 199 (369)
T ss_dssp -CTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred -CccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence 21 456778889999999985 6655443
No 222
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.07 E-value=3.9e-08 Score=86.13 Aligned_cols=214 Identities=13% Similarity=0.046 Sum_probs=132.3
Q ss_pred CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCC--cEEEEecCCCccccee---ecc
Q 048511 4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDK--VIRIWKLALRGSSANT---QST 78 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg--~i~iwd~~~~~~~~~~---~~~ 78 (351)
.++.|++||.++ +....+ ... ..... ++|+ ++++.|+.+..++ .|.+|+.......... ...
T Consensus 150 ~~~~I~~id~~~-g~~~~~--~~~-~~~~~-ia~~--------~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~ 216 (409)
T 3hrp_A 150 DDPRVRLISVDD-NKVTTV--HPG-FKGGK-PAVT--------KDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGST 216 (409)
T ss_dssp TTTEEEEEETTT-TEEEEE--EET-CCBCB-CEEC--------TTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTT
T ss_pred CCCcEEEEECCC-CEEEEe--ecc-CCCCc-eeEe--------cCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccch
Confidence 457899999887 644332 222 23334 8899 7888888888766 7888887655432222 011
Q ss_pred cccceeeeEeeecCCeEEecCCceeEEEEEe------------ccccccce--EEEEecCCCCCCCCCcccCCCceeEEe
Q 048511 79 YRKEVISLASYIEGPVLVAGSSSYQVSVESL------------LIGHEDWV--YSVQWEPPSTAPSDGVSCQQPSSILSA 144 (351)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------~~~h~~~v--~~l~~~p~~~~~~~~~~~~~~~~l~s~ 144 (351)
.......+++++++..|++....+.+..+.. ..++...- ..++|+| .++.+ +++-
T Consensus 217 ~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p-----~~g~l------yv~d 285 (409)
T 3hrp_A 217 FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYF-----VDSNF------YMSD 285 (409)
T ss_dssp SCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEET-----TTTEE------EEEE
T ss_pred hcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeC-----CCCEE------EEEe
Confidence 2345678889995444444555555543321 11111111 2889994 25666 7777
Q ss_pred ecCCeEEEEeccCCCcceEEEEEecc-cc---------ccccceEEEEEcCCCCEEEEEe-eCCeEEEEEcccCcccCcc
Q 048511 145 SMDKTMMIWQPEKTTGIWMNVVTVGE-LS---------HSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNVGVDIDNWQ 213 (351)
Q Consensus 145 ~~d~~i~iwd~~~~~~~~~~~~~~~~-~~---------~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~ 213 (351)
..++.|+.|+... . ...+.-.. .. ..-.....++++++++++++-. .++.|+.|++.++.
T Consensus 286 ~~~~~I~~~~~~g--~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~----- 356 (409)
T 3hrp_A 286 QNLSSVYKITPDG--E--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY----- 356 (409)
T ss_dssp TTTTEEEEECTTC--C--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE-----
T ss_pred CCCCEEEEEecCC--C--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE-----
Confidence 7789999998764 2 22221100 00 0013478899999999777766 78999999976553
Q ss_pred cccccccc---------------cccEEEEEeecCCCEEEEEeCCCcEEEEcC
Q 048511 214 PQKVPSGH---------------FAAVMDISWSRSSDYLLSVSHDQTTRVFAP 251 (351)
Q Consensus 214 ~~~~~~~~---------------~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~ 251 (351)
+..+.++ -.....+++++++.++++-..++.|+.+++
T Consensus 357 -v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 357 -VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 2222222 245889999999888888778888888765
No 223
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.06 E-value=8e-11 Score=101.88 Aligned_cols=177 Identities=10% Similarity=0.000 Sum_probs=93.8
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK 81 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~ 81 (351)
|+.||.|+.||..+ |+. +..+.. +.+.+..+. .++..+++++.|+.|..||..+++.+......
T Consensus 15 gs~dg~v~a~d~~t-G~~--~W~~~~--~~~~s~p~~--------~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~--- 78 (369)
T 2hz6_A 15 STLDGSLHAVSKRT-GSI--KWTLKE--DPVLQVPTH--------VEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT--- 78 (369)
T ss_dssp EETTSEEEEEETTT-CCE--EEEEEC--CCSCCCC-------------CCEEECTTTCCEEEC-----CCSEECSCC---
T ss_pred EcCCCEEEEEECCC-CCE--EEEecC--CCceecceE--------cCCCEEEEeCCCCEEEEEECCCCceeeeeecc---
Confidence 57799999999998 743 445544 455555555 56778888889999999999887654332210
Q ss_pred ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcc
Q 048511 82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGI 161 (351)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 161 (351)
....+ ..+|.- .++.. +++++.|+.|+.||.++ ++
T Consensus 79 -------------------------------~~~~~---~~sp~~---~~~~~------v~~g~~dg~v~a~D~~t--G~ 113 (369)
T 2hz6_A 79 -------------------------------IPELV---QASPCR---SSDGI------LYMGKKQDIWYVIDLLT--GE 113 (369)
T ss_dssp -------------------------------HHHHH---TTCSCC--------------CCCCEEEEEEEEECCC-----
T ss_pred -------------------------------Ccccc---ccCceE---ecCCE------EEEEeCCCEEEEEECCC--Cc
Confidence 00001 001100 12334 77888999999999998 65
Q ss_pred eEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCC---CEEE
Q 048511 162 WMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSS---DYLL 238 (351)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~---~~l~ 238 (351)
.+..+.. +. ...++|++..+++++.++.|+.||.++++. +..+..+ ......+.++. ..++
T Consensus 114 ~~w~~~~-----~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~-----~W~~~~~--~~~~~~~~~~~~~~~~v~ 177 (369)
T 2hz6_A 114 KQQTLSS-----AF----ADSLSPSTSLLYLGRTEYTITMYDTKTREL-----RWNATYF--DYAASLPEDDVDYKMSHF 177 (369)
T ss_dssp ----------------------------EEEEEEEEEEECCCSSSSSC-----CCEEEEE--EECCBCCCCCTTCCCCEE
T ss_pred EEEEecC-----CC----cccccccCCEEEEEecCCEEEEEECCCCCE-----EEeEecc--cccCccccCCccccceEE
Confidence 5444431 11 134566888999999999999999988742 2222211 11223334332 4577
Q ss_pred EEeCCCcEEEEcCCCcc
Q 048511 239 SVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 239 s~~~dg~i~vwd~~~~~ 255 (351)
+++.||.|+.||..+++
T Consensus 178 ~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 178 VSNGDGLVVTVDSESGD 194 (369)
T ss_dssp EEETSCEEEEECTTTCC
T ss_pred EECCCCEEEEEECCCCc
Confidence 78899999999999887
No 224
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.01 E-value=1.2e-07 Score=88.61 Aligned_cols=154 Identities=10% Similarity=0.066 Sum_probs=92.4
Q ss_pred eEEEEeccCCCcceEEEEEeccccc----cccceEEEEEcCCCC---EEEEEeeCCeEEEEEcccCcccCcccccc----
Q 048511 149 TMMIWQPEKTTGIWMNVVTVGELSH----SALGFYGGHWSPDGR---SILAHGYGGAFHLWRNVGVDIDNWQPQKV---- 217 (351)
Q Consensus 149 ~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~i~~i~~~~~~~---~l~~~~~dg~i~~~d~~~~~~~~~~~~~~---- 217 (351)
.|..+|.++ ++.+-.++...... ............+|+ .++.++.+|.++++|.++++.........
T Consensus 276 ~v~AlD~~T--G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~ 353 (689)
T 1yiq_A 276 SIVAVNADT--GEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWT 353 (689)
T ss_dssp EEEEEETTT--CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred eEEEEEccC--CceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccc
Confidence 399999999 66655555321100 111222223333554 78889999999999998885310000000
Q ss_pred -------------------ccccc-----------ccEEEEEeecCCCEEEEEeC-------------------------
Q 048511 218 -------------------PSGHF-----------AAVMDISWSRSSDYLLSVSH------------------------- 242 (351)
Q Consensus 218 -------------------~~~~~-----------~~v~~v~~sp~~~~l~s~~~------------------------- 242 (351)
+.... ..-..++++|+..++++...
T Consensus 354 ~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g 433 (689)
T 1yiq_A 354 KGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLG 433 (689)
T ss_dssp EEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCS
T ss_pred cccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccC
Confidence 00000 01123688888877776532
Q ss_pred --------------------CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEE
Q 048511 243 --------------------DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARV 302 (351)
Q Consensus 243 --------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~v 302 (351)
+|.|+.||+.+++ ..|+.- .+ .+.....+.. .+.+++.|+.||.++.
T Consensus 434 ~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~------~~W~~~----~~-~~~~~g~~~t--agglvf~gt~dg~l~a 500 (689)
T 1yiq_A 434 LRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ------AAWEVP----YV-TIFNGGTLST--AGNLVFEGSADGRVIA 500 (689)
T ss_dssp SEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE------EEEEEE----ES-SSCCCCEEEE--TTTEEEEECTTSEEEE
T ss_pred ccccccCcccccCCCCCCCcceeEEEEECCCCC------eEeEcc----CC-CCccCccceE--CCCEEEEECCCCcEEE
Confidence 3778999998887 244432 11 2233345555 6789999999999999
Q ss_pred EecC-chhhhceeecc
Q 048511 303 FEAP-LSFLKTLNHAT 317 (351)
Q Consensus 303 w~~~-~~~~~~~~~~~ 317 (351)
||.+ |+.+..++...
T Consensus 501 ~D~~tG~~lw~~~~~~ 516 (689)
T 1yiq_A 501 YAADTGEKLWEQPAAS 516 (689)
T ss_dssp EETTTCCEEEEEECSS
T ss_pred EECCCCccceeeeCCC
Confidence 9987 88887776543
No 225
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.97 E-value=2e-07 Score=87.04 Aligned_cols=148 Identities=12% Similarity=0.104 Sum_probs=94.5
Q ss_pred eEEEEeccCCCcceEEEEEeccccc----cccceEEEEEcCCC---CEEEEEeeCCeEEEEEcccCcccCccccccccc-
Q 048511 149 TMMIWQPEKTTGIWMNVVTVGELSH----SALGFYGGHWSPDG---RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG- 220 (351)
Q Consensus 149 ~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~i~~i~~~~~~---~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~- 220 (351)
.|..+|.++ ++.+-.++...... .......+....+| ..++.++.+|.++++|..+++. +..+..
T Consensus 284 sv~AlD~~T--G~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~-----l~~~~~~ 356 (677)
T 1kb0_A 284 SIVALDPDT--GKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF-----ISAKNFV 356 (677)
T ss_dssp EEEEECTTT--CCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE-----EEEEESS
T ss_pred EEEEEECCC--CCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE-----ecccccc
Confidence 599999998 66655555321100 01122223333467 6788999999999999988753 111110
Q ss_pred ----------ccccE------------------------EEEEeecCCCEEEEEeC------------------------
Q 048511 221 ----------HFAAV------------------------MDISWSRSSDYLLSVSH------------------------ 242 (351)
Q Consensus 221 ----------~~~~v------------------------~~v~~sp~~~~l~s~~~------------------------ 242 (351)
....+ ..++++|+..++++...
T Consensus 357 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~ 436 (677)
T 1kb0_A 357 PVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQS 436 (677)
T ss_dssp CCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTG
T ss_pred ccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccc
Confidence 00000 25788998888876543
Q ss_pred -------------------CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEE
Q 048511 243 -------------------DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVF 303 (351)
Q Consensus 243 -------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw 303 (351)
.+.|..||+.+++ ..|+.- +..++....+.. ++.+++.++.||.+++|
T Consensus 437 ~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~------~~W~~~-----~~~~~~~g~~~~--~g~~v~~g~~dg~l~a~ 503 (677)
T 1kb0_A 437 GTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK------AAWSVE-----HVSPWNGGTLTT--AGNVVFQGTADGRLVAY 503 (677)
T ss_dssp GGTCCCCEEECSSCCCSCCEEEEEEEETTTTE------EEEEEE-----ESSSCCCCEEEE--TTTEEEEECTTSEEEEE
T ss_pred ccccccccccccccCCCCCccEEEEEeCCCCc------EEeecC-----CCCCCcCcceEe--CCCEEEEECCCCcEEEE
Confidence 2779999998887 344432 223345555666 67788889999999999
Q ss_pred ecC-chhhhceeec
Q 048511 304 EAP-LSFLKTLNHA 316 (351)
Q Consensus 304 ~~~-~~~~~~~~~~ 316 (351)
|.. ++.+.++...
T Consensus 504 D~~tG~~lw~~~~~ 517 (677)
T 1kb0_A 504 HAATGEKLWEAPTG 517 (677)
T ss_dssp ETTTCCEEEEEECS
T ss_pred ECCCCceeeeeeCC
Confidence 986 8888777643
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.96 E-value=3e-07 Score=85.79 Aligned_cols=107 Identities=9% Similarity=0.131 Sum_probs=74.2
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEecccc------ccccce------------------------EEEEEcCCCCEE
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELS------HSALGF------------------------YGGHWSPDGRSI 190 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~------~~~~~i------------------------~~i~~~~~~~~l 190 (351)
++.++.+|.|+++|.++ ++.+..+...... .....+ ..++++|+...+
T Consensus 330 l~~~~~~G~l~~lD~~t--G~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~ 407 (677)
T 1kb0_A 330 ILHAPKNGFFFVLDRTN--GKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV 407 (677)
T ss_dssp EEECCTTSEEEEEETTT--CCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred EEEECCCCEEEEEECCC--CCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEE
Confidence 88899999999999999 7766555432110 000001 257889988888
Q ss_pred EEEeeC-------------------------------------------CeEEEEEcccCcccCcccccccccccccEEE
Q 048511 191 LAHGYG-------------------------------------------GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD 227 (351)
Q Consensus 191 ~~~~~d-------------------------------------------g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~ 227 (351)
++...+ +.|..||+.+++. +-++. +...+..
T Consensus 408 yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~-----~W~~~-~~~~~~~ 481 (677)
T 1kb0_A 408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA-----AWSVE-HVSPWNG 481 (677)
T ss_dssp EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE-----EEEEE-ESSSCCC
T ss_pred EEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE-----EeecC-CCCCCcC
Confidence 776542 7899999988742 22222 2333445
Q ss_pred EEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511 228 ISWSRSSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 228 v~~sp~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
..+..++.+++.++.|+.+++||.++++
T Consensus 482 g~~~~~g~~v~~g~~dg~l~a~D~~tG~ 509 (677)
T 1kb0_A 482 GTLTTAGNVVFQGTADGRLVAYHAATGE 509 (677)
T ss_dssp CEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cceEeCCCEEEEECCCCcEEEEECCCCc
Confidence 5567778888889999999999999998
No 227
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.95 E-value=1.1e-07 Score=82.94 Aligned_cols=223 Identities=5% Similarity=-0.030 Sum_probs=135.3
Q ss_pred CCceEEEEEccCCCceEEEEeeee-------cCCceeEEEeeCCcccCCCCCccEEEEeeC--CCcEEEEecCCCcccce
Q 048511 4 LDNKIHLYRGQRTGKFVRACELKG-------HTDWIRSLDFSLPVCTSGEAISILLVSSSQ--DKVIRIWKLALRGSSAN 74 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~~~~~~~~~-------h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~--dg~i~iwd~~~~~~~~~ 74 (351)
.++.|.++|..+ .+. +..+.- .......+.|+ +++++|+.+.. ++.|.+.|+.+.+....
T Consensus 147 ~~~~VsviD~~t-~~v--v~~I~v~g~~r~~~g~~P~~~~~s--------pDGk~lyV~n~~~~~~VsVID~~t~kvv~~ 215 (426)
T 3c75_H 147 RTDYVEVFDPVT-FLP--IADIELPDAPRFLVGTYQWMNALT--------PDNKNLLFYQFSPAPAVGVVDLEGKTFDRM 215 (426)
T ss_dssp EEEEEEEECTTT-CCE--EEEEEETTCCCCCBSCCGGGSEEC--------TTSSEEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred CCCEEEEEECCC-CcE--EEEEECCCccccccCCCcceEEEc--------CCCCEEEEEecCCCCeEEEEECCCCeEEEE
Confidence 467899999998 643 333321 11234578899 88999998864 57899999999877665
Q ss_pred eecccc------cceeeeEeeecCCeEEecCCceeEEEEE--eccccccce-EEEEecCCCCCCCCCcccCCCceeEEee
Q 048511 75 TQSTYR------KEVISLASYIEGPVLVAGSSSYQVSVES--LLIGHEDWV-YSVQWEPPSTAPSDGVSCQQPSSILSAS 145 (351)
Q Consensus 75 ~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~h~~~v-~~l~~~p~~~~~~~~~~~~~~~~l~s~~ 145 (351)
+..... ....-+.++++|+++++....+.+.... .+.....++ ..+.|. +++.. ++..+
T Consensus 216 I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~------~dg~~------~~~~s 283 (426)
T 3c75_H 216 LDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFS------LRSGR------LVWPT 283 (426)
T ss_dssp EECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEEC------TTTCE------EEEEB
T ss_pred EEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeec------CCCCE------EEEEe
Confidence 543211 0112245566666665544333332111 111111111 123445 55555 66667
Q ss_pred cCCeEEEEeccCCCcceEEEEEecccc-----ccccceEEEEEcCCCCEEEEEee----------CCeEEEEEcccCccc
Q 048511 146 MDKTMMIWQPEKTTGIWMNVVTVGELS-----HSALGFYGGHWSPDGRSILAHGY----------GGAFHLWRNVGVDID 210 (351)
Q Consensus 146 ~d~~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~i~~i~~~~~~~~l~~~~~----------dg~i~~~d~~~~~~~ 210 (351)
..+.|.+.|+..........+.+.... ........++++|+++.+++... ++.|.++|..+.
T Consensus 284 ~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~--- 360 (426)
T 3c75_H 284 YTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG--- 360 (426)
T ss_dssp TTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC---
T ss_pred CCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC---
Confidence 788999999975222222222211000 00111223689999988877653 357999999887
Q ss_pred CcccccccccccccEEEEEeecCCC-EEEEEe-CCCcEEEEcCCCcc
Q 048511 211 NWQPQKVPSGHFAAVMDISWSRSSD-YLLSVS-HDQTTRVFAPWKNV 255 (351)
Q Consensus 211 ~~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~-~dg~i~vwd~~~~~ 255 (351)
+.+.++.. ......+.|+|+++ ++++.. .++.|.++|+.+.+
T Consensus 361 --kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 361 --ERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp --CEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred --eEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 44555543 23578999999999 888877 58999999998887
No 228
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.93 E-value=3e-07 Score=79.64 Aligned_cols=245 Identities=9% Similarity=-0.018 Sum_probs=134.9
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK 81 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~ 81 (351)
++.++.|..+|.++ ++.. ................ +..++.++.++.|..+|..+++...........
T Consensus 109 ~~~~g~l~a~d~~t-G~~~--W~~~~~~~~~~~p~~~----------~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~ 175 (376)
T 3q7m_A 109 GSEKAQVYALNTSD-GTVA--WQTKVAGEALSRPVVS----------DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPS 175 (376)
T ss_dssp EETTSEEEEEETTT-CCEE--EEEECSSCCCSCCEEE----------TTEEEEECTTSEEEEEETTTCCEEEEEECCC--
T ss_pred EcCCCEEEEEECCC-CCEE--EEEeCCCceEcCCEEE----------CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCc
Confidence 45678899999988 7432 3333222211112222 447777888999999999988876655432211
Q ss_pred c----eeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEE-----------------ecCCCCCCCCCcccCCCce
Q 048511 82 E----VISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQ-----------------WEPPSTAPSDGVSCQQPSS 140 (351)
Q Consensus 82 ~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~-----------------~~p~~~~~~~~~~~~~~~~ 140 (351)
. ...... .+..++++..++.+..+....+.. ++... ..|. ..+..
T Consensus 176 ~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~--~w~~~~~~~~~~~~~~~~~~~~~~p~----~~~~~------ 241 (376)
T 3q7m_A 176 LSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQM--IWQQRISQATGSTEIDRLSDVDTTPV----VVNGV------ 241 (376)
T ss_dssp ---CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCE--EEEEECCC-----------CCCCCCE----EETTE------
T ss_pred eeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcE--EEEEecccCCCCcccccccccCCCcE----EECCE------
Confidence 0 011111 234455555555444433222211 11111 1110 01223
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc-
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS- 219 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~- 219 (351)
+..++.++.+..+|.++ ++.+-.... .....+.. ++..+++++.++.|..+|..+++. +....
T Consensus 242 v~~~~~~g~l~~~d~~t--G~~~w~~~~-------~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~-----~w~~~~ 305 (376)
T 3q7m_A 242 VFALAYNGNLTALDLRS--GQIMWKREL-------GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVT-----LWTQSD 305 (376)
T ss_dssp EEEECTTSCEEEEETTT--CCEEEEECC-------CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCE-----EEEECT
T ss_pred EEEEecCcEEEEEECCC--CcEEeeccC-------CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcE-----EEeecc
Confidence 77777899999999988 655443321 12333333 466788888899999999988753 22211
Q ss_pred cccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCe
Q 048511 220 GHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKV 299 (351)
Q Consensus 220 ~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~ 299 (351)
.....+..... .+..|+.++.+|.|.++|..+++. .|+ .......+....... +..|+.++.+|.
T Consensus 306 ~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~------~~~----~~~~~~~~~~~~~~~---~~~l~v~~~~G~ 370 (376)
T 3q7m_A 306 LLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRF------VAQ----QKVDSSGFQTEPVAA---DGKLLIQAKDGT 370 (376)
T ss_dssp TTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE------EEE----EECCTTCBCSCCEEE---TTEEEEEBTTSC
T ss_pred cCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcE------EEE----EecCCCcceeCCEEE---CCEEEEEeCCCE
Confidence 11111222222 245788888999999999988872 222 222222232222223 456778888999
Q ss_pred EEEEe
Q 048511 300 ARVFE 304 (351)
Q Consensus 300 v~vw~ 304 (351)
|..|+
T Consensus 371 l~~~~ 375 (376)
T 3q7m_A 371 VYSIT 375 (376)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99887
No 229
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.93 E-value=3.5e-07 Score=76.79 Aligned_cols=204 Identities=9% Similarity=-0.016 Sum_probs=122.7
Q ss_pred CCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc---c
Q 048511 3 GLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST---Y 79 (351)
Q Consensus 3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~---~ 79 (351)
..++.|..|+.. ++. ..+..+...+..+++. ++++++++...++.|.+|+.. +......... .
T Consensus 64 ~~~~~i~~~~~~--g~~---~~~~~~~~~~~gl~~d--------~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~ 129 (305)
T 3dr2_A 64 LVGRRVLGWRED--GTV---DVLLDATAFTNGNAVD--------AQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKR 129 (305)
T ss_dssp TTTTEEEEEETT--SCE---EEEEESCSCEEEEEEC--------TTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEE
T ss_pred CCCCEEEEEeCC--CCE---EEEeCCCCccceeeEC--------CCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCc
Confidence 356788888873 432 3444566778999999 788877665566789999976 3322111111 1
Q ss_pred ccceeeeEeeecCCeEEe----cCC-------------ceeEEEEEeccc------cccceEEEEecCCCCCCCCCcccC
Q 048511 80 RKEVISLASYIEGPVLVA----GSS-------------SYQVSVESLLIG------HEDWVYSVQWEPPSTAPSDGVSCQ 136 (351)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~----~~~-------------~~~~~~~~~~~~------h~~~v~~l~~~p~~~~~~~~~~~~ 136 (351)
...+..+++.++|.++++ +.. ...+..+..-.+ .......++|+ ++++.
T Consensus 130 ~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~gl~~s------pdg~~-- 201 (305)
T 3dr2_A 130 LNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNGLAFS------PDEQT-- 201 (305)
T ss_dssp CSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEEEEEC------TTSSE--
T ss_pred cCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCCcceEEc------CCCCE--
Confidence 123557889999998885 211 122222211001 22345778999 78876
Q ss_pred CCceeEEeecC------CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc
Q 048511 137 QPSSILSASMD------KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID 210 (351)
Q Consensus 137 ~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 210 (351)
|..+... +.|.+|++.. +.......... ........++++++|+ |.++..+ .|.+|+....
T Consensus 202 ----lyv~~~~~~~~~~~~i~~~~~~~--~~l~~~~~~~~--~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~~g~--- 268 (305)
T 3dr2_A 202 ----LYVSQTPEQGHGSVEITAFAWRD--GALHDRRHFAS--VPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDSDGQ--- 268 (305)
T ss_dssp ----EEEEECCC---CCCEEEEEEEET--TEEEEEEEEEC--CSSSCCCSEEECTTSC-EEECCSS-EEEEECTTSC---
T ss_pred ----EEEEecCCcCCCCCEEEEEEecC--CCccCCeEEEE--CCCCCCCeEEECCCCC-EEEecCC-cEEEECCCCC---
Confidence 6666554 7899999876 32111111111 1223345688999999 4444444 5999998543
Q ss_pred CcccccccccccccEEEEEeecCCCEEEEEeCCCc
Q 048511 211 NWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQT 245 (351)
Q Consensus 211 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~ 245 (351)
.+..+..+. .+.+++|+|+++.|+.++.++.
T Consensus 269 ---~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 269 ---LLGHIPTPG-TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp ---EEEEEECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred ---EEEEEECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence 233443333 5788999999988887776643
No 230
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.90 E-value=9.9e-07 Score=71.62 Aligned_cols=210 Identities=9% Similarity=0.022 Sum_probs=132.8
Q ss_pred EEEEeeeecCC--ceeEEEeeCCcccCCCCCccEEEEeeC--CCcEEEEecCCCcccceeecccccceeeeEeeecCCeE
Q 048511 20 VRACELKGHTD--WIRSLDFSLPVCTSGEAISILLVSSSQ--DKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVL 95 (351)
Q Consensus 20 ~~~~~~~~h~~--~V~~l~~~~~~~~~~~~~~~~l~t~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 95 (351)
+.+.++. |.. ....+.|+ +++.++++.+. ++.|++.|+.+++.......
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~--------~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l------------------ 62 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYA--------ENDTLFESTGLYGRSSVRQVALQTGKVENIHKM------------------ 62 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEEC--------STTEEEEEECSTTTCEEEEEETTTCCEEEEEEC------------------
T ss_pred eEEEEEE-CCCCCCcccEEEe--------CCCeEEEECCCCCCCEEEEEECCCCCEEEEEec------------------
Confidence 4455553 553 36899999 76655555553 57999999998876543321
Q ss_pred EecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc
Q 048511 96 VAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA 175 (351)
Q Consensus 96 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 175 (351)
..+ .....+++. .+.+ .++.-.++.+.++|..+ .+.+.++... . . .
T Consensus 63 ---------------~~~-~fgeGi~~~-------g~~l------yv~t~~~~~v~viD~~t--~~v~~~i~~g-~-~-~ 108 (266)
T 2iwa_A 63 ---------------DDS-YFGEGLTLL-------NEKL------YQVVWLKNIGFIYDRRT--LSNIKNFTHQ-M-K-D 108 (266)
T ss_dssp ---------------CTT-CCEEEEEEE-------TTEE------EEEETTCSEEEEEETTT--TEEEEEEECC-S-S-S
T ss_pred ---------------CCC-cceEEEEEe-------CCEE------EEEEecCCEEEEEECCC--CcEEEEEECC-C-C-C
Confidence 111 112244544 1234 55555688999999998 7777777643 0 1 1
Q ss_pred cceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccc-----cccEEEEEeecCCCEEEEEeCCCcEEEEc
Q 048511 176 LGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH-----FAAVMDISWSRSSDYLLSVSHDQTTRVFA 250 (351)
Q Consensus 176 ~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~-----~~~v~~v~~sp~~~~l~s~~~dg~i~vwd 250 (351)
...++++++.++++..++.|.++|..+.+ .+..+.-. -..++.+.|. ++..++..-.++.|.+-|
T Consensus 109 ----g~glt~Dg~~l~vs~gs~~l~viD~~t~~-----v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID 178 (266)
T 2iwa_A 109 ----GWGLATDGKILYGSDGTSILYEIDPHTFK-----LIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARIS 178 (266)
T ss_dssp ----CCEEEECSSSEEEECSSSEEEEECTTTCC-----EEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred ----eEEEEECCCEEEEECCCCeEEEEECCCCc-----EEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEE
Confidence 13355678878777788999999998853 23333211 1246788888 676555555678999999
Q ss_pred CCCccccccCccceEEecccc--------ccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 251 PWKNVASLMGENSWHEVARPQ--------VHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
..+++.. .+-.+..+. ......+.++|+| ....+++++.....|.+.++.
T Consensus 179 ~~tg~V~-----~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~-~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 179 AKDGTLL-----GWILLPNLRKKLIDEGFRDIDVLNGIAWDQ-ENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp TTTCCEE-----EEEECHHHHHHHHHTTCTTCCCEEEEEEET-TTTEEEEEETTCSEEEEEEEE
T ss_pred CCCCcEE-----EEEECCCcccccccccccccCceEEEEEcC-CCCEEEEECCCCCeEEEEEEe
Confidence 9988721 111111110 0112468999998 234677888899999998865
No 231
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.84 E-value=8.4e-06 Score=70.43 Aligned_cols=267 Identities=11% Similarity=0.069 Sum_probs=141.6
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeec-------CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccce
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGH-------TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSAN 74 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h-------~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~ 74 (351)
++.++.|..+|.++ ++..-...+... ...+.+.-. ..+..++.++.++.|..+|..+++....
T Consensus 59 ~~~~g~v~a~d~~t-G~~~W~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~v~~~~g~l~a~d~~tG~~~W~ 128 (376)
T 3q7m_A 59 ADRAGLVKALNADD-GKEIWSVSLAEKDGWFSKEPALLSGGVT---------VSGGHVYIGSEKAQVYALNTSDGTVAWQ 128 (376)
T ss_dssp ECTTSEEEEEETTT-CCEEEEEECCC---CCSCCCCCEEEEEE---------EETTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EcCCCeEEEEEccC-CceeeeecCccccccccccCcccccCce---------EeCCEEEEEcCCCEEEEEECCCCCEEEE
Confidence 45678999999988 754322222211 122322211 2356788888899999999998887655
Q ss_pred eecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCC--------CCCCCCCcccCCCceeEEeec
Q 048511 75 TQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPP--------STAPSDGVSCQQPSSILSASM 146 (351)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~--------~~~~~~~~~~~~~~~l~s~~~ 146 (351)
..... ........ .+..++++..++.+..+....+. .++....... ... ..+.. ++.+..
T Consensus 129 ~~~~~--~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~--~~W~~~~~~~~~~~~~~~~~~-~~~~~------v~~g~~ 196 (376)
T 3q7m_A 129 TKVAG--EALSRPVV-SDGLVLIHTSNGQLQALNEADGA--VKWTVNLDMPSLSLRGESAPT-TAFGA------AVVGGD 196 (376)
T ss_dssp EECSS--CCCSCCEE-ETTEEEEECTTSEEEEEETTTCC--EEEEEECCC-----CCCCCCE-EETTE------EEECCT
T ss_pred EeCCC--ceEcCCEE-ECCEEEEEcCCCeEEEEECCCCc--EEEEEeCCCCceeecCCCCcE-EECCE------EEEEcC
Confidence 44321 11111111 23344444444444443322221 1111111000 000 11223 777888
Q ss_pred CCeEEEEeccCCCcceEEEEEeccccccc--cceEEEEEcC--CCCEEEEEeeCCeEEEEEcccCcccCccccccccccc
Q 048511 147 DKTMMIWQPEKTTGIWMNVVTVGELSHSA--LGFYGGHWSP--DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHF 222 (351)
Q Consensus 147 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~i~~i~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~ 222 (351)
++.|..+|.++ ++.+-........... ..+..+.-.| .+..+++++.++.+..+|..+++. +.... .
T Consensus 197 ~g~l~~~d~~t--G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~-----~w~~~--~ 267 (376)
T 3q7m_A 197 NGRVSAVLMEQ--GQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI-----MWKRE--L 267 (376)
T ss_dssp TTEEEEEETTT--CCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE-----EEEEC--C
T ss_pred CCEEEEEECCC--CcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE-----Eeecc--C
Confidence 99999999998 6555444322110000 0000011111 246677788899999999988742 22221 1
Q ss_pred ccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEE
Q 048511 223 AAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARV 302 (351)
Q Consensus 223 ~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~v 302 (351)
.....+.. ++..++.++.++.|..+|..+++ ..|+.-. .....+...... +..|+.++.+|.|.+
T Consensus 268 ~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~------~~w~~~~---~~~~~~~~~~~~----~~~l~v~~~~g~l~~ 332 (376)
T 3q7m_A 268 GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGV------TLWTQSD---LLHRLLTSPVLY----NGNLVVGDSEGYLHW 332 (376)
T ss_dssp CCEEEEEE--ETTEEEEEETTCCEEEEETTTCC------EEEEECT---TTTSCCCCCEEE----TTEEEEECTTSEEEE
T ss_pred CCCCCceE--ECCEEEEEcCCCeEEEEECCCCc------EEEeecc---cCCCcccCCEEE----CCEEEEEeCCCeEEE
Confidence 22333333 35677778889999999998887 2343321 111223333332 457888888999999
Q ss_pred EecC-chhhhcee
Q 048511 303 FEAP-LSFLKTLN 314 (351)
Q Consensus 303 w~~~-~~~~~~~~ 314 (351)
+|.. ++.+..+.
T Consensus 333 ~d~~tG~~~~~~~ 345 (376)
T 3q7m_A 333 INVEDGRFVAQQK 345 (376)
T ss_dssp EETTTCCEEEEEE
T ss_pred EECCCCcEEEEEe
Confidence 9976 66655443
No 232
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.83 E-value=2e-07 Score=79.86 Aligned_cols=216 Identities=7% Similarity=-0.084 Sum_probs=122.5
Q ss_pred CCCceEEEEEccCCCceEEEEeeeec-------CCceeEEEeeCCcccCCCCCccEEEEeeC--CCcEEE--EecCCCcc
Q 048511 3 GLDNKIHLYRGQRTGKFVRACELKGH-------TDWIRSLDFSLPVCTSGEAISILLVSSSQ--DKVIRI--WKLALRGS 71 (351)
Q Consensus 3 ~~dg~i~vw~~~~~~~~~~~~~~~~h-------~~~V~~l~~~~~~~~~~~~~~~~l~t~~~--dg~i~i--wd~~~~~~ 71 (351)
..++.|.+||+.+ ++ .+.++..+ ......+.++ +++++|+.+.. +..|.+ +|..+
T Consensus 93 ~~~~~VsviD~~T-~~--vv~~I~v~~~~~~~~g~~P~~ia~S--------pDGk~lyVan~~~~~~v~V~~iD~~t--- 158 (368)
T 1mda_H 93 KRTDYVEVFDPVT-FL--PIADIELPDAPRFSVGPRVHIIGNC--------ASSACLLFFLFGSSAAAGLSVPGASD--- 158 (368)
T ss_dssp SEEEEEEEECTTT-CC--EEEEEEETTSCSCCBSCCTTSEEEC--------TTSSCEEEEECSSSCEEEEEETTTEE---
T ss_pred CCCCEEEEEECCC-CC--EEEEEECCCccccccCCCcceEEEc--------CCCCEEEEEccCCCCeEEEEEEchhh---
Confidence 3578999999998 64 34555432 1235689999 88999998864 467888 99876
Q ss_pred cceeeccc------ccceeeeEeeecCCeEEecCCc-----eeEEEEE--eccccccceEEEEecCCCCCCCCCcccCCC
Q 048511 72 SANTQSTY------RKEVISLASYIEGPVLVAGSSS-----YQVSVES--LLIGHEDWVYSVQWEPPSTAPSDGVSCQQP 138 (351)
Q Consensus 72 ~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~--~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~ 138 (351)
...+.... .....-+..++++..+.+.... +.+.... .+.....+. . . +++..
T Consensus 159 v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~------~~~~~---- 224 (368)
T 1mda_H 159 DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-A------NYPGM---- 224 (368)
T ss_dssp EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-E------TTTTE----
T ss_pred ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-c------ccCCE----
Confidence 22221110 0011122334444444433222 2211100 011111222 2 3 34444
Q ss_pred ceeEEeecCCeEEEEeccCCCcceEEEEEeccc-----cccccceEEEEEcCCCCEEEEEee-C--------CeEEEEEc
Q 048511 139 SSILSASMDKTMMIWQPEKTTGIWMNVVTVGEL-----SHSALGFYGGHWSPDGRSILAHGY-G--------GAFHLWRN 204 (351)
Q Consensus 139 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~i~~i~~~~~~~~l~~~~~-d--------g~i~~~d~ 204 (351)
++..+. +.|.+.|+.......+..+.+... .........++++|+++.++++.. . +.+.++|+
T Consensus 225 --~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~ 301 (368)
T 1mda_H 225 --LVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA 301 (368)
T ss_dssp --EEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEES
T ss_pred --EEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEEC
Confidence 555555 899999987522222222221100 000111122689999998887644 2 35669999
Q ss_pred ccCcccCcccccccccccccEEEEEeecCCCE-EEEEe-CCCcEEEEcCCCcc
Q 048511 205 VGVDIDNWQPQKVPSGHFAAVMDISWSRSSDY-LLSVS-HDQTTRVFAPWKNV 255 (351)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~-l~s~~-~dg~i~vwd~~~~~ 255 (351)
.+. +.+..+.... ....++|+|||++ +++.. .++.|.++|+.+.+
T Consensus 302 ~t~-----~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 302 SVG-----QTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp SSC-----CEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred CCC-----eEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 887 4455555333 5789999999984 56666 58999999998876
No 233
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.82 E-value=1.2e-06 Score=81.95 Aligned_cols=107 Identities=11% Similarity=0.102 Sum_probs=71.7
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEecccc-----------------------ccc-----------cceEEEEEcCC
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELS-----------------------HSA-----------LGFYGGHWSPD 186 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-----------------------~~~-----------~~i~~i~~~~~ 186 (351)
++.++.+|.++++|.++ ++.+....+.... ... .....++++|+
T Consensus 322 v~~~~~~G~l~~lD~~t--G~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~ 399 (689)
T 1yiq_A 322 LMQAPKNGFFYVIDRAT--GELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPD 399 (689)
T ss_dssp EEECCTTSEEEEEETTT--CCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETT
T ss_pred EEEECCCCeEEEEECCC--CCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCC
Confidence 88889999999999998 6665433321100 000 00123688888
Q ss_pred CCEEEEEee---------------------------------------------CCeEEEEEcccCcccCcccccccccc
Q 048511 187 GRSILAHGY---------------------------------------------GGAFHLWRNVGVDIDNWQPQKVPSGH 221 (351)
Q Consensus 187 ~~~l~~~~~---------------------------------------------dg~i~~~d~~~~~~~~~~~~~~~~~~ 221 (351)
...+++... +|.|..||+.+++. +-++..+
T Consensus 400 ~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~-----~W~~~~~ 474 (689)
T 1yiq_A 400 TGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQA-----AWEVPYV 474 (689)
T ss_dssp TTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEE-----EEEEEES
T ss_pred CCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCe-----EeEccCC
Confidence 887776533 37799999988753 3333322
Q ss_pred cccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511 222 FAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 222 ~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
..+....+...+.+++.++.|+.++.||.++++
T Consensus 475 -~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 475 -TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp -SSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred -CCccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence 223334566678899999999999999999998
No 234
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.80 E-value=9.6e-06 Score=68.49 Aligned_cols=140 Identities=9% Similarity=0.014 Sum_probs=82.5
Q ss_pred CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEE-eeCCeEEEEEcccCcccCcccccccccccccE
Q 048511 147 DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAH-GYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAV 225 (351)
Q Consensus 147 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v 225 (351)
++.|..||... +....... .-.....++++|+++.|+++ ...+.|..|++............. ..+ .
T Consensus 164 ~g~v~~~d~~~--~~~~~~~~------~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~~g-P 231 (322)
T 2fp8_A 164 TGRLIKYDPST--KETTLLLK------ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---IPN-P 231 (322)
T ss_dssp CEEEEEEETTT--TEEEEEEE------EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---CSS-E
T ss_pred CceEEEEeCCC--CEEEEecc------CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---CCC-C
Confidence 36788888765 33222111 11234568999999977666 456899999987532111111111 123 7
Q ss_pred EEEEeecCCCEEEEEeC----------CCcEEEEcCCCccccccCccceEEecccccc-ccceeEEEEeeeCCCcEEEEe
Q 048511 226 MDISWSRSSDYLLSVSH----------DQTTRVFAPWKNVASLMGENSWHEVARPQVH-GHDINCVTIIQGKGNHRFVSG 294 (351)
Q Consensus 226 ~~v~~sp~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~s~ 294 (351)
..+++.++|+++++... .+.|..+|.. ++ ....+....+. ...++++++ . ++.++++.
T Consensus 232 ~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~-------~~~~~~~~~g~~~~~~~~~~~-~--~g~L~v~~ 300 (322)
T 2fp8_A 232 GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GN-------ILEVIPLPPPFAGEHFEQIQE-H--DGLLYIGT 300 (322)
T ss_dssp EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SC-------EEEEEECCTTTTTSCCCEEEE-E--TTEEEEEC
T ss_pred CCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CC-------EEEEEECCCCCccccceEEEE-e--CCEEEEee
Confidence 78999999987766544 4678888864 33 11222222111 234666766 4 57888888
Q ss_pred cCCCeEEEEecCchh
Q 048511 295 ADEKVARVFEAPLSF 309 (351)
Q Consensus 295 ~~dg~v~vw~~~~~~ 309 (351)
...+.|.++++..+.
T Consensus 301 ~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 301 LFHGSVGILVYDKKG 315 (322)
T ss_dssp SSCSEEEEEEC----
T ss_pred cCCCceEEEeccccc
Confidence 888999999987443
No 235
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.79 E-value=4.9e-07 Score=84.90 Aligned_cols=216 Identities=13% Similarity=0.075 Sum_probs=124.9
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCC-------------cEEEEecCC
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDK-------------VIRIWKLAL 68 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg-------------~i~iwd~~~ 68 (351)
|+.+.+|++||+++ ++.... .+.+. ....++|+ +++.|+.++.+. .|.+|++.+
T Consensus 151 G~~~~~i~v~dl~t-g~~~~~-~~~~~--k~~~~~Ws---------Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt 217 (693)
T 3iuj_A 151 GSDWREIHLMDVES-KQPLET-PLKDV--KFSGISWL---------GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGT 217 (693)
T ss_dssp SCCEEEEEEEETTT-CSEEEE-EEEEE--ESCCCEEE---------TTTEEEEEESSCCC-------CCCCEEEEEETTS
T ss_pred CCceEEEEEEECCC-CCCCcc-ccCCc--eeccEEEe---------CCCEEEEEEecCcccccccccCCCcEEEEEECCC
Confidence 45557899999998 764332 23221 12456776 466777777664 399999987
Q ss_pred Ccccce-eecc---cccceeeeEeeecCCeEEecC----CceeEEEEE---------eccccccceEEEEecCCCCCCCC
Q 048511 69 RGSSAN-TQST---YRKEVISLASYIEGPVLVAGS----SSYQVSVES---------LLIGHEDWVYSVQWEPPSTAPSD 131 (351)
Q Consensus 69 ~~~~~~-~~~~---~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~---------~~~~h~~~v~~l~~~p~~~~~~~ 131 (351)
...... +... .......+.++++|+.++... ....+.++. .+..+....... ++ ++
T Consensus 218 ~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~------~~ 290 (693)
T 3iuj_A 218 AQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VD------NK 290 (693)
T ss_dssp CGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EE------EE
T ss_pred CcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-Ee------cc
Confidence 654222 1111 122356788999999886532 222333332 122233333333 44 33
Q ss_pred CcccCCCceeEEeecC---CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCC---eEEEEEcc
Q 048511 132 GVSCQQPSSILSASMD---KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGG---AFHLWRNV 205 (351)
Q Consensus 132 ~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg---~i~~~d~~ 205 (351)
+.. +++....+ +.|..+|+..........+. .+...+. .|+++++.|+....++ .|++||+.
T Consensus 291 g~~-----l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~-----~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 291 GST-----LYLLTNRDAPNRRLVTVDAANPGPAHWRDLI-----PERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp TTE-----EEEEECTTCTTCEEEEEETTSCCGGGCEEEE-----CCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred CCE-----EEEEECCCCCCCEEEEEeCCCCCccccEEEe-----cCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 333 14444443 67999998873221122333 2333343 8889998887766543 68889887
Q ss_pred cCcccCcccccccc-cccccEEEEEeecCCCEEEEEeCC----CcEEEEcCCCcc
Q 048511 206 GVDIDNWQPQKVPS-GHFAAVMDISWSRSSDYLLSVSHD----QTTRVFAPWKNV 255 (351)
Q Consensus 206 ~~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~l~s~~~d----g~i~vwd~~~~~ 255 (351)
++. ...+. ...+.+..+.++++++.|+....+ +.++.||+.+++
T Consensus 359 g~~------~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 359 GKR------VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp SCE------EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred CCe------eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 542 22222 234567788888888776655444 789999987765
No 236
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.74 E-value=1.7e-06 Score=80.71 Aligned_cols=256 Identities=11% Similarity=0.025 Sum_probs=136.0
Q ss_pred eEEEEEccCCCceEEEEeeee-cCCceeEEEeeCCcccCCCCCccEEEEeeC-CCcEEEEecCCCcccceeeccccccee
Q 048511 7 KIHLYRGQRTGKFVRACELKG-HTDWIRSLDFSLPVCTSGEAISILLVSSSQ-DKVIRIWKLALRGSSANTQSTYRKEVI 84 (351)
Q Consensus 7 ~i~vw~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~ 84 (351)
.+.+||..+ +++..+..+.. +.....++++. .++++++.|+. +..+.+||..+................
T Consensus 220 ~~~~yd~~t-~~w~~~~~~~~~~~~~~~~~~~~--------~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~ 290 (656)
T 1k3i_A 220 LTSSWDPST-GIVSDRTVTVTKHDMFCPGISMD--------GNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQ 290 (656)
T ss_dssp EEEEECTTT-CCBCCCEEEECSCCCSSCEEEEC--------TTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSC
T ss_pred EEEEEeCCC-CcEEeCcccCCCCCCccccccCC--------CCCCEEEeCCCCCCceEEecCcCCceeECCCCCcccccc
Confidence 578888888 66655544432 23334456777 67889999984 457999999876543322222122223
Q ss_pred eeEeeecCCeEEecCC-ce-----eEEEEEeccccccceEEEE---ecCCCC------CCCCCcccCCCceeEEeecCC-
Q 048511 85 SLASYIEGPVLVAGSS-SY-----QVSVESLLIGHEDWVYSVQ---WEPPST------APSDGVSCQQPSSILSASMDK- 148 (351)
Q Consensus 85 ~~~~~~~~~~l~~~~~-~~-----~~~~~~~~~~h~~~v~~l~---~~p~~~------~~~~~~~~~~~~~l~s~~~d~- 148 (351)
+++..+++++++.|+. +. .+.++.. .+..-..+. ..|... ...++.+ ++.++.++
T Consensus 291 s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~---~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~i------yv~Gg~~g~ 361 (656)
T 1k3i_A 291 SSATMSDGRVFTIGGSWSGGVFEKNGEVYSP---SSKTWTSLPNAKVNPMLTADKQGLYRSDNHA------WLFGWKKGS 361 (656)
T ss_dssp EEEECTTSCEEEECCCCCSSSCCCCEEEEET---TTTEEEEETTSCSGGGCCCCTTGGGTTTCSC------CEEECGGGC
T ss_pred ceEEecCCeEEEEeCcccCCcccccceEeCC---CCCcceeCCCccccccccccccceeecCCce------EEEECCCCc
Confidence 4455568999888873 31 2222211 111111110 000000 0023334 56665554
Q ss_pred --------eEEEEeccCCCcceEEEEEeccc----cccccceEEEEEcC-CCCEEEEEeeCC-----------eEEEEEc
Q 048511 149 --------TMMIWQPEKTTGIWMNVVTVGEL----SHSALGFYGGHWSP-DGRSILAHGYGG-----------AFHLWRN 204 (351)
Q Consensus 149 --------~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~i~~i~~~~-~~~~l~~~~~dg-----------~i~~~d~ 204 (351)
.+..||... ..+......... ......-.++.|.. ++++++.|+.++ .+.+||.
T Consensus 362 ~~~~~~~~~v~~yd~~~--~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~ 439 (656)
T 1k3i_A 362 VFQAGPSTAMNWYYTSG--SGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEP 439 (656)
T ss_dssp EEECCSSSEEEEEECST--TCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCST
T ss_pred EEEecCccceeeeecCC--cceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCC
Confidence 467888887 554433321111 00111223444543 677778877543 6778887
Q ss_pred ccCcccCccccc--ccccccccEEEEEeecCCCEEEEEeCC-----------CcEEEEcCCCccccccCccceEEecccc
Q 048511 205 VGVDIDNWQPQK--VPSGHFAAVMDISWSRSSDYLLSVSHD-----------QTTRVFAPWKNVASLMGENSWHEVARPQ 271 (351)
Q Consensus 205 ~~~~~~~~~~~~--~~~~~~~~v~~v~~sp~~~~l~s~~~d-----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~ 271 (351)
.+.. |..+. .+. ....-.+++..|++++++.|+.+ ..+.+||..+. .|..+....
T Consensus 440 ~~~~---W~~~~~~~mp-~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~--------~W~~~~~~~ 507 (656)
T 1k3i_A 440 GTSP---NTVFASNGLY-FARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD--------TFYKQNPNS 507 (656)
T ss_dssp TSCC---EEEECTTCCS-SCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT--------EEEECCCCS
T ss_pred CCCC---eeEEccCCCC-CCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC--------ceeecCCCC
Confidence 6653 22221 111 11112345567899999998864 46889998654 466655443
Q ss_pred ccccceeEEEEeeeCCCcEEEEecC
Q 048511 272 VHGHDINCVTIIQGKGNHRFVSGAD 296 (351)
Q Consensus 272 ~~~~~i~~~~~~~~~~~~~l~s~~~ 296 (351)
.....-.+..+.+ ++++++.|+.
T Consensus 508 ~~R~~hs~a~ll~--dg~v~v~GG~ 530 (656)
T 1k3i_A 508 IVRVYHSISLLLP--DGRVFNGGGG 530 (656)
T ss_dssp SCCCTTEEEEECT--TSCEEEEECC
T ss_pred CccccccHhhcCC--CcEEEecCCC
Confidence 2222223344556 8999999885
No 237
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.72 E-value=2.1e-05 Score=64.42 Aligned_cols=229 Identities=9% Similarity=0.013 Sum_probs=133.5
Q ss_pred CceEEEEEccCCCceEE---EEeeeecCCceeEEEeeCCcccCCCCCc-cEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511 5 DNKIHLYRGQRTGKFVR---ACELKGHTDWIRSLDFSLPVCTSGEAIS-ILLVSSSQDKVIRIWKLALRGSSANTQSTYR 80 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~---~~~~~~h~~~V~~l~~~~~~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 80 (351)
.+.|+.++++. ..... ...+......+..++|+ +++ .++++-..++.|..+++....... .
T Consensus 9 ~~~I~~~~~~g-~~~~~~~~~~~~~~~~~~~~gi~~d--------~~~~~ly~~d~~~~~I~~~~~~g~~~~~-~----- 73 (267)
T 1npe_A 9 TGKIERLPLER-NTMKKTEAKAFLHIPAKVIIGLAFD--------CVDKVVYWTDISEPSIGRASLHGGEPTT-I----- 73 (267)
T ss_dssp EEEEEEEEESS-SCBCGGGCEEEEEEEEEEEEEEEEE--------TTTTEEEEEETTTTEEEEEESSSCCCEE-E-----
T ss_pred CCeEEEEEecC-cccccccceeeecCCCCcEEEEEEe--------cCCCEEEEEECCCCEEEEEecCCCCcEE-E-----
Confidence 35788888876 32110 01111122356789999 644 445555567889999986542210 0
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG 160 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 160 (351)
..........+++.| ..+.+ +++-...+.|.++++.. .
T Consensus 74 -----------------------------~~~~~~~p~~ia~d~-----~~~~l------yv~d~~~~~I~~~~~~g--~ 111 (267)
T 1npe_A 74 -----------------------------IRQDLGSPEGIALDH-----LGRTI------FWTDSQLDRIEVAKMDG--T 111 (267)
T ss_dssp -----------------------------ECTTCCCEEEEEEET-----TTTEE------EEEETTTTEEEEEETTS--C
T ss_pred -----------------------------EECCCCCccEEEEEe-----cCCeE------EEEECCCCEEEEEEcCC--C
Confidence 011123567888983 23445 55656678899999874 2
Q ss_pred ceEEEEEeccccccccceEEEEEcCCCCEEEEEee---CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEE
Q 048511 161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY---GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYL 237 (351)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l 237 (351)
. ...+.. ........++++|++..|+.+.. .+.|..+++..... ..+ ..........++++|++..|
T Consensus 112 ~-~~~~~~----~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~---~~~--~~~~~~~P~gia~d~~~~~l 181 (267)
T 1npe_A 112 Q-RRVLFD----TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR---RIL--AQDNLGLPNGLTFDAFSSQL 181 (267)
T ss_dssp S-CEEEEC----SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC---EEE--ECTTCSCEEEEEEETTTTEE
T ss_pred C-EEEEEE----CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc---EEE--EECCCCCCcEEEEcCCCCEE
Confidence 2 122210 11235688999997666665554 36888888865321 111 11123457889999987666
Q ss_pred E-EEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhcee
Q 048511 238 L-SVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLN 314 (351)
Q Consensus 238 ~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~ 314 (351)
+ +-...+.|.++|+..... ...+. . ......++.. ++.++++....+.|.++|.. ++.+.++.
T Consensus 182 yv~d~~~~~I~~~~~~g~~~-------~~~~~---~-~~~P~gi~~d---~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 182 CWVDAGTHRAECLNPAQPGR-------RKVLE---G-LQYPFAVTSY---GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp EEEETTTTEEEEEETTEEEE-------EEEEE---C-CCSEEEEEEE---TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred EEEECCCCEEEEEecCCCce-------EEEec---C-CCCceEEEEe---CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 4 445568999999865431 01111 1 1223456543 46677777778899999986 66666664
No 238
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.71 E-value=7.4e-06 Score=65.80 Aligned_cols=196 Identities=7% Similarity=0.036 Sum_probs=119.6
Q ss_pred EEEEeeeecCCc--eeEEEeeCCcccCCCCCccEEEEeeCCC--cEEEEecCCCcccceeecccccceeeeEeeecCCeE
Q 048511 20 VRACELKGHTDW--IRSLDFSLPVCTSGEAISILLVSSSQDK--VIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVL 95 (351)
Q Consensus 20 ~~~~~~~~h~~~--V~~l~~~~~~~~~~~~~~~~l~t~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 95 (351)
+.+.++ .|... ...|.|+ . +.++.+.+.+| .|+++|+.+++........
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~--------~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~----------------- 84 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR--------N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELG----------------- 84 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE--------T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECC-----------------
T ss_pred EEEEEe-cCCCCcccceEEEE--------C-CEEEEECCCCCCceEEEEECCCCcEEEEEecC-----------------
Confidence 445555 45543 4888888 3 56777777776 8999999998765443311
Q ss_pred EecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc
Q 048511 96 VAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA 175 (351)
Q Consensus 96 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 175 (351)
. ...-..+.+. ..++ .+..-.++.+.+||..+ .+.+.++... .
T Consensus 85 ----------------~-~~FgeGit~~-------g~~l------y~ltw~~~~v~v~D~~t--~~~~~ti~~~---~-- 127 (262)
T 3nol_A 85 ----------------K-RYFGEGISDW-------KDKI------VGLTWKNGLGFVWNIRN--LRQVRSFNYD---G-- 127 (262)
T ss_dssp ----------------T-TCCEEEEEEE-------TTEE------EEEESSSSEEEEEETTT--CCEEEEEECS---S--
T ss_pred ----------------C-ccceeEEEEe-------CCEE------EEEEeeCCEEEEEECcc--CcEEEEEECC---C--
Confidence 0 1111223433 1233 44445688999999998 7778777732 1
Q ss_pred cceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc----cc-ccEEEEEeecCCCEEEEEeCCCcEEEEc
Q 048511 176 LGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG----HF-AAVMDISWSRSSDYLLSVSHDQTTRVFA 250 (351)
Q Consensus 176 ~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~----~~-~~v~~v~~sp~~~~l~s~~~dg~i~vwd 250 (351)
....+.++++.|+.+..++.|.++|..+.+ .+.++.- .. ..++.+.|. +|++++..-.+..|.+.|
T Consensus 128 ---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~-----v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vID 198 (262)
T 3nol_A 128 ---EGWGLTHNDQYLIMSDGTPVLRFLDPESLT-----PVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRID 198 (262)
T ss_dssp ---CCCCEEECSSCEEECCSSSEEEEECTTTCS-----EEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEC
T ss_pred ---CceEEecCCCEEEEECCCCeEEEEcCCCCe-----EEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEE
Confidence 112333577778777778899999998863 2333322 11 345667877 676665555688999999
Q ss_pred CCCccccccCccceEEecccc-------ccccceeEEEEeeeCCCcEEEEe
Q 048511 251 PWKNVASLMGENSWHEVARPQ-------VHGHDINCVTIIQGKGNHRFVSG 294 (351)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~l~s~ 294 (351)
.++++.. .+-.+..+. ......+.+||+| ..+.++++|
T Consensus 199 p~tG~V~-----~~Id~~~L~~~~~~~~~~~~vlNGIA~dp-~~~~lfVTG 243 (262)
T 3nol_A 199 PETGKVT-----GIIDLNGILAEAGPLPSPIDVLNGIAWDK-EHHRLFVTG 243 (262)
T ss_dssp TTTCBEE-----EEEECTTGGGGSCSCCSSCCCEEEEEEET-TTTEEEEEE
T ss_pred CCCCcEE-----EEEECCcCccccccccCcCCceEEEEEcC-CCCEEEEEC
Confidence 9998732 122222111 1123479999999 334555666
No 239
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.68 E-value=5.4e-06 Score=77.28 Aligned_cols=153 Identities=10% Similarity=0.072 Sum_probs=88.9
Q ss_pred eEEEEeccCCCcceEEEEEeccccc----cccceEEEEEcCCCC---EEEEEeeCCeEEEEEcccCcccCcccc------
Q 048511 149 TMMIWQPEKTTGIWMNVVTVGELSH----SALGFYGGHWSPDGR---SILAHGYGGAFHLWRNVGVDIDNWQPQ------ 215 (351)
Q Consensus 149 ~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~i~~i~~~~~~~---~l~~~~~dg~i~~~d~~~~~~~~~~~~------ 215 (351)
.|..+|.++ ++.+-.++...... ...+.....+..+++ .++.++.+|.++++|..+++.......
T Consensus 271 ~v~AlD~~t--G~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~ 348 (668)
T 1kv9_A 271 SILAIRPDT--GKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWA 348 (668)
T ss_dssp EEEEECTTT--CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSE
T ss_pred eEEEEcCCC--CceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccc
Confidence 499999998 66655555321110 012233333334665 688899999999999988753100000
Q ss_pred ccccc-ccc------------------------cEEEEEeecCCCEEEEE------------------------------
Q 048511 216 KVPSG-HFA------------------------AVMDISWSRSSDYLLSV------------------------------ 240 (351)
Q Consensus 216 ~~~~~-~~~------------------------~v~~v~~sp~~~~l~s~------------------------------ 240 (351)
..+.. ... .-..++++|+..+++..
T Consensus 349 ~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 428 (668)
T 1kv9_A 349 EKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADA 428 (668)
T ss_dssp EEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGC
T ss_pred cccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcccccc
Confidence 00000 000 01125777776665531
Q ss_pred ------eCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhce
Q 048511 241 ------SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTL 313 (351)
Q Consensus 241 ------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~ 313 (351)
..+|.|..||+.+++ ..|+.-. ........+.. .+.+++.++.|+.+++||.. ++.+..+
T Consensus 429 ~~~p~~~~~g~l~A~D~~tG~------~~W~~~~-----~~~~~~~~~~t--~gg~vf~g~~dg~l~a~d~~tG~~l~~~ 495 (668)
T 1kv9_A 429 TDVPAAVVSGALLAWDPVKQK------AAWKVPY-----PTHWNGGTLST--AGNLVFQGTAAGQMHAYSADKGEALWQF 495 (668)
T ss_dssp CCCCGGGCEEEEEEEETTTTE------EEEEEEE-----SSSCCCCEEEE--TTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCCCCCCccceEEEEeCCCCc------EEEEccC-----CCCCcCceeEe--CCCEEEEECCcccchhhhhhcChhheEe
Confidence 124789999998887 3454321 12233344455 57788889999999999987 8777766
Q ss_pred eec
Q 048511 314 NHA 316 (351)
Q Consensus 314 ~~~ 316 (351)
+..
T Consensus 496 ~~~ 498 (668)
T 1kv9_A 496 EAQ 498 (668)
T ss_dssp ECS
T ss_pred cCC
Confidence 543
No 240
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.65 E-value=3.6e-05 Score=61.24 Aligned_cols=198 Identities=9% Similarity=0.027 Sum_probs=122.1
Q ss_pred eEEEEeeeecCC--ceeEEEeeCCcccCCCCCccEEEEeeCCC--cEEEEecCCCcccceeecccccceeeeEeeecCCe
Q 048511 19 FVRACELKGHTD--WIRSLDFSLPVCTSGEAISILLVSSSQDK--VIRIWKLALRGSSANTQSTYRKEVISLASYIEGPV 94 (351)
Q Consensus 19 ~~~~~~~~~h~~--~V~~l~~~~~~~~~~~~~~~~l~t~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (351)
++.+.++ .|.. -...+.|+ . +.++.+.+.+| .|+.+|+.+++........
T Consensus 9 ~~v~~~~-phd~~~ftqGL~~~--------~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~---------------- 62 (243)
T 3mbr_X 9 YRVVKRY-PHDTTAFTEGLFYL--------R-GHLYESTGETGRSSVRKVDLETGRILQRAEVP---------------- 62 (243)
T ss_dssp EEEEEEE-ECCTTCCEEEEEEE--------T-TEEEEEECCTTSCEEEEEETTTCCEEEEEECC----------------
T ss_pred eEEEEEc-CCCCccccccEEEE--------C-CEEEEECCCCCCceEEEEECCCCCEEEEEeCC----------------
Confidence 4555666 4654 56799998 4 56667777654 8999999998766544321
Q ss_pred EEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccccc
Q 048511 95 LVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHS 174 (351)
Q Consensus 95 l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 174 (351)
.+ ..-..+.+. .+++ .+..-.++.+.+||..+ .+.+.++... .
T Consensus 63 -----------------~~-~fgeGi~~~-------~~~l------y~ltw~~~~v~v~D~~t--l~~~~ti~~~---~- 105 (243)
T 3mbr_X 63 -----------------PP-YFGAGIVAW-------RDRL------IQLTWRNHEGFVYDLAT--LTPRARFRYP---G- 105 (243)
T ss_dssp -----------------TT-CCEEEEEEE-------TTEE------EEEESSSSEEEEEETTT--TEEEEEEECS---S-
T ss_pred -----------------CC-cceeEEEEe-------CCEE------EEEEeeCCEEEEEECCc--CcEEEEEeCC---C-
Confidence 11 011223333 2333 45555688999999998 8888877732 1
Q ss_pred ccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc--cc---ccEEEEEeecCCCEEEEEeCCCcEEEE
Q 048511 175 ALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG--HF---AAVMDISWSRSSDYLLSVSHDQTTRVF 249 (351)
Q Consensus 175 ~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~--~~---~~v~~v~~sp~~~~l~s~~~dg~i~vw 249 (351)
.-+.++ +++..|+.+..++.|.++|..+.+ .+.++.- +. ..++.+.+. +|+.++..-.+..|.+.
T Consensus 106 --~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~-----~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vI 175 (243)
T 3mbr_X 106 --EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQ-----QVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARI 175 (243)
T ss_dssp --CCCEEE--ECSSCEEEECSSSEEEEECTTTCC-----EEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred --CceEEe--eCCCEEEEECCCCeEEEEeCCCCe-----EEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEE
Confidence 113444 567777777778999999998853 2333332 11 345667766 66655555467899999
Q ss_pred cCCCccccccCccceEEecccc--------ccccceeEEEEeeeCCCcEEEEec
Q 048511 250 APWKNVASLMGENSWHEVARPQ--------VHGHDINCVTIIQGKGNHRFVSGA 295 (351)
Q Consensus 250 d~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~~l~s~~ 295 (351)
|.++++.. .+-.+..+. ......+.+|++| ..+.++++|-
T Consensus 176 Dp~tG~V~-----~~idl~~l~~~~~~~~~~~~~vlNGIA~d~-~~~~lfVTGK 223 (243)
T 3mbr_X 176 DPASGKVV-----AWIDLQALVPDADALTDSTNDVLNGIAFDA-EHDRLFVTGK 223 (243)
T ss_dssp CTTTCBEE-----EEEECGGGSTTTTSCCCTTSSCEEEEEEET-TTTEEEEEET
T ss_pred ECCCCCEE-----EEEECCcCccccccccCCcCCceEEEEEcC-CCCEEEEECC
Confidence 99998832 222222111 1223479999998 3455666663
No 241
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.65 E-value=7.1e-07 Score=75.52 Aligned_cols=248 Identities=10% Similarity=-0.021 Sum_probs=130.6
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK 81 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~ 81 (351)
|+.++.|..|| .+ ++. ...+..+...+.++... .++. |..++.+ |..+|. +++......... .
T Consensus 36 ~t~~~~l~~~d-~~-g~~--~~~~~~~~~~~~~~~~~--------~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~-~ 98 (330)
T 3hxj_A 36 GSSNKNLYAIN-TD-GSV--KWFFKSGEIIECRPSIG--------KDGT-IYFGSDK--VYAINP-DGTEKWRFDTKK-A 98 (330)
T ss_dssp SSTTTTTEEEC-TT-SCE--EESSCGGGEEEECCEET--------TTTE-ECCSSCE--EEEECC-CGGGGGGSCC----
T ss_pred EcCCCEEEEEC-CC-CcE--EEEEecCCCcccceEEe--------cCCc-EEEecCc--EEEECC-CCcEEEEEECCC-C
Confidence 56678888999 66 643 33333334445666665 4554 4445544 888886 444433322111 1
Q ss_pred ceeeeEeeecCCeEEecCCceeEEEEEec-------cccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEe
Q 048511 82 EVISLASYIEGPVLVAGSSSYQVSVESLL-------IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQ 154 (351)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd 154 (351)
........ +..+.++..++.+..+..- ......+.++... +++. +..++.++.|..+|
T Consensus 99 ~~~~~~~~--~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~------~~g~-------l~vgt~~~~l~~~d 163 (330)
T 3hxj_A 99 IVSDFTIF--EDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVS------EDGT-------IYVGSNDNYLYAIN 163 (330)
T ss_dssp --CCEEEE--TTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEEC------TTSC-------EEEECTTSEEEEEC
T ss_pred cccCceEE--CCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEc------CCCE-------EEEEcCCCEEEEEC
Confidence 11112222 3344444433333322211 1112222333333 3443 66777889999999
Q ss_pred ccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCC
Q 048511 155 PEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSS 234 (351)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~ 234 (351)
.. +.....+. .....+.++...+++...+ ++ +.|..|| .+++ ...........+.++...+++
T Consensus 164 ~~---g~~~~~~~-----~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~-----~~~~~~~~~~~~~~~~~~~~g 226 (330)
T 3hxj_A 164 PD---GTEKWRFK-----TNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGT-----EKWNFYAGYWTVTRPAISEDG 226 (330)
T ss_dssp TT---SCEEEEEE-----CSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSC-----EEEEECCSSCCCSCCEECTTS
T ss_pred CC---CCEeEEEe-----cCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCc-----EEEEEccCCcceeceEECCCC
Confidence 87 23333333 1233456677777777554 44 7789998 4442 233333334567778888887
Q ss_pred CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhce
Q 048511 235 DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTL 313 (351)
Q Consensus 235 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 313 (351)
.+ ..++.++.|..+|. ++. ..|... .....+..+.+.+ +..|..++.+|.|..+|..++.+..+
T Consensus 227 ~l-~v~t~~~gl~~~~~-~g~------~~~~~~----~~~~~~~~~~~~~---~g~l~v~t~~ggl~~~d~~g~~~~~~ 290 (330)
T 3hxj_A 227 TI-YVTSLDGHLYAINP-DGT------EKWRFK----TGKRIESSPVIGN---TDTIYFGSYDGHLYAINPDGTEKWNF 290 (330)
T ss_dssp CE-EEEETTTEEEEECT-TSC------EEEEEE----CSSCCCSCCEECT---TSCEEEECTTCEEEEECTTSCEEEEE
T ss_pred eE-EEEcCCCeEEEECC-CCC------EeEEee----CCCCccccceEcC---CCeEEEecCCCCEEEECCCCcEEEEE
Confidence 64 44667788888874 333 122221 1222234455544 44566777888899999766655443
No 242
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.64 E-value=3.7e-06 Score=72.91 Aligned_cols=163 Identities=8% Similarity=0.034 Sum_probs=103.7
Q ss_pred eEEEEecCCCCCCCCCcccCCCceeEEeecC------CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEE
Q 048511 117 VYSVQWEPPSTAPSDGVSCQQPSSILSASMD------KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSI 190 (351)
Q Consensus 117 v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 190 (351)
-..+... +++ + ++++..+ +.|.++|.++ .+.+.++.... .....-+.+.|+|+++.+
T Consensus 140 Ph~~~~~------pdG-i------~Vs~~g~~~g~~~g~v~vlD~~T--~~v~~~~~~~~--~~~~~~Yd~~~~p~~~~m 202 (462)
T 2ece_A 140 LHTVHCG------PDA-I------YISALGNEEGEGPGGILMLDHYS--FEPLGKWEIDR--GDQYLAYDFWWNLPNEVL 202 (462)
T ss_dssp EEEEEEC------SSC-E------EEEEEEETTSCSCCEEEEECTTT--CCEEEECCSBC--TTCCCCCCEEEETTTTEE
T ss_pred ccceeEC------CCe-E------EEEcCCCcCCCCCCeEEEEECCC--CeEEEEEccCC--CCccccceEEECCCCCEE
Confidence 4456667 677 6 6776666 7899999998 67766665321 112234568889999988
Q ss_pred EEEe-------------------eCCeEEEEEcccCcccCcccccccccc--cccEEEEEe--ecCCCEEEEEe------
Q 048511 191 LAHG-------------------YGGAFHLWRNVGVDIDNWQPQKVPSGH--FAAVMDISW--SRSSDYLLSVS------ 241 (351)
Q Consensus 191 ~~~~-------------------~dg~i~~~d~~~~~~~~~~~~~~~~~~--~~~v~~v~~--sp~~~~l~s~~------ 241 (351)
+++. .+.+|.+||+.+. +.+.++... ......+.| +|+++++++++
T Consensus 203 vsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-----k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~ 277 (462)
T 2ece_A 203 VSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-----KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKD 277 (462)
T ss_dssp EECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-----EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTT
T ss_pred EEccCcCccccccccchhhhhhccCCEEEEEECCCC-----cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccC
Confidence 8885 3689999999875 334444432 123455555 99999987766
Q ss_pred CCCcEEEEcCCCccccccCccceEEeccc-------------cccccceeEEEEeeeCCCcEEEEec-CCCeEEEEecC
Q 048511 242 HDQTTRVFAPWKNVASLMGENSWHEVARP-------------QVHGHDINCVTIIQGKGNHRFVSGA-DEKVARVFEAP 306 (351)
Q Consensus 242 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~~~~~~~~~~~~~l~s~~-~dg~v~vw~~~ 306 (351)
.+++|.+|....+.... ..... +... .+-......+.+++ |+++|.++. ..+.|.+||+.
T Consensus 278 Lss~V~v~~~d~g~~~~--~~vId-i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~--DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 278 LSSSIWLWFYEDGKWNA--EKVIE-IPAEPLEGNLPEILKPFKAVPPLVTDIDISL--DDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp CCEEEEEEEEETTEEEE--EEEEE-ECCEECCSSCCGGGGGGTEECCCCCCEEECT--TSCEEEEEETTTTEEEEEECS
T ss_pred CCceEEEEEecCCceeE--EEEEe-CCCccccccccccccccccCCCceeEEEECC--CCCEEEEEeCCCCEEEEEEec
Confidence 46688887765432110 00000 0110 00023478899999 777775544 68899999985
No 243
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.64 E-value=1.4e-05 Score=64.18 Aligned_cols=195 Identities=9% Similarity=0.047 Sum_probs=122.3
Q ss_pred EEEeeeecCC--ceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEec
Q 048511 21 RACELKGHTD--WIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAG 98 (351)
Q Consensus 21 ~~~~~~~h~~--~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 98 (351)
.+.++ .|.. -...|.|+ . +.++.+.+.+|.|+++|+.+++..... ..
T Consensus 45 Vv~~~-phd~~~ftqGL~~~--------~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-------------------- 93 (268)
T 3nok_A 45 IIREY-PHATNAFTQGLVFH--------Q-GHFFESTGHQGTLRQLSLESAQPVWME-RL-------------------- 93 (268)
T ss_dssp EEEEE-ECCTTCCEEEEEEE--------T-TEEEEEETTTTEEEECCSSCSSCSEEE-EC--------------------
T ss_pred EEEEE-cCCCccccceEEEE--------C-CEEEEEcCCCCEEEEEECCCCcEEeEE-CC--------------------
Confidence 34455 3543 34788888 3 667788888999999999998766433 11
Q ss_pred CCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccce
Q 048511 99 SSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGF 178 (351)
Q Consensus 99 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i 178 (351)
. ...-..+++. ...+ .+..-.++.+.+||..+ .+.+.++... .. -
T Consensus 94 -------------~-~~FgeGit~~-------g~~L------y~ltw~~~~v~V~D~~T--l~~~~ti~~~---~e---G 138 (268)
T 3nok_A 94 -------------G-NIFAEGLASD-------GERL------YQLTWTEGLLFTWSGMP--PQRERTTRYS---GE---G 138 (268)
T ss_dssp -------------T-TCCEEEEEEC-------SSCE------EEEESSSCEEEEEETTT--TEEEEEEECS---SC---C
T ss_pred -------------C-CcceeEEEEe-------CCEE------EEEEccCCEEEEEECCc--CcEEEEEeCC---Cc---e
Confidence 1 1111234443 2233 44555688999999999 8888887732 11 1
Q ss_pred EEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc--cc---ccEEEEEeecCCCEEEEEeCCCcEEEEcCCC
Q 048511 179 YGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG--HF---AAVMDISWSRSSDYLLSVSHDQTTRVFAPWK 253 (351)
Q Consensus 179 ~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~--~~---~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~ 253 (351)
+.++ ++++.|+.+..++.|.++|..+.+ .+.++.- +. ..++.+.|. +|++++..-.+..|.+-|.++
T Consensus 139 wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~-----v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~T 210 (268)
T 3nok_A 139 WGLC--YWNGKLVRSDGGTMLTFHEPDGFA-----LVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPAT 210 (268)
T ss_dssp CCEE--EETTEEEEECSSSEEEEECTTTCC-----EEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTT
T ss_pred eEEe--cCCCEEEEECCCCEEEEEcCCCCe-----EEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCC
Confidence 3333 567888888889999999998863 2333322 11 245677877 676555555678999999999
Q ss_pred ccccccCccceEEeccc--------cccccceeEEEEeeeCCCcEEEEec
Q 048511 254 NVASLMGENSWHEVARP--------QVHGHDINCVTIIQGKGNHRFVSGA 295 (351)
Q Consensus 254 ~~~~~~~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~~~l~s~~ 295 (351)
++.. .+-.+..+ .....-.+.+|++| ..+.++++|-
T Consensus 211 G~V~-----~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp-~~~rlfVTGK 254 (268)
T 3nok_A 211 GTVV-----GVIDASALTRAVAGQVTNPEAVLNGIAVEP-GSGRIFMTGK 254 (268)
T ss_dssp CBEE-----EEEECHHHHHHHTTTCCCTTCCEEEEEECT-TTCCEEEEET
T ss_pred CcEE-----EEEECCCCcccccccccCcCCceEEEEEcC-CCCEEEEeCC
Confidence 8732 12222211 01123479999998 3466777773
No 244
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.60 E-value=1.6e-06 Score=73.30 Aligned_cols=209 Identities=12% Similarity=0.034 Sum_probs=110.2
Q ss_pred ccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEe-------ccccccceEEEE
Q 048511 49 SILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL-------LIGHEDWVYSVQ 121 (351)
Q Consensus 49 ~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~h~~~v~~l~ 121 (351)
+.+.+ ++.++.|..+|.. ++......... ....++...+++.+++. ..++.+..+.. +......+.++.
T Consensus 108 ~~l~v-~t~~~~l~~~d~~-g~~~~~~~~~~-~~~~~~~~~~~g~l~vg-t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 183 (330)
T 3hxj_A 108 DILYV-TSMDGHLYAINTD-GTEKWRFKTKK-AIYATPIVSEDGTIYVG-SNDNYLYAINPDGTEKWRFKTNDAITSAAS 183 (330)
T ss_dssp TEEEE-ECTTSEEEEECTT-SCEEEEEECSS-CCCSCCEECTTSCEEEE-CTTSEEEEECTTSCEEEEEECSSCCCSCCE
T ss_pred CEEEE-EecCCEEEEEcCC-CCEEEEEcCCC-ceeeeeEEcCCCEEEEE-cCCCEEEEECCCCCEeEEEecCCCceeeeE
Confidence 44443 4556777777777 55444333321 12233344445554333 22222222111 111122344444
Q ss_pred ecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEE
Q 048511 122 WEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHL 201 (351)
Q Consensus 122 ~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~ 201 (351)
+. .++. +..++ +.|..+| .+ +....... .....+.++...+++. +.+++.++.|..
T Consensus 184 ~d------~~g~-------l~v~t--~~l~~~d-~~--g~~~~~~~-----~~~~~~~~~~~~~~g~-l~v~t~~~gl~~ 239 (330)
T 3hxj_A 184 IG------KDGT-------IYFGS--DKVYAIN-PD--GTEKWNFY-----AGYWTVTRPAISEDGT-IYVTSLDGHLYA 239 (330)
T ss_dssp EC------TTCC-------EEEES--SSEEEEC-TT--SCEEEEEC-----CSSCCCSCCEECTTSC-EEEEETTTEEEE
T ss_pred Ec------CCCE-------EEEEe--CEEEEEC-CC--CcEEEEEc-----cCCcceeceEECCCCe-EEEEcCCCeEEE
Confidence 44 3444 44444 7799999 55 44443333 2234577788887765 556677888888
Q ss_pred EEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEE
Q 048511 202 WRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVT 281 (351)
Q Consensus 202 ~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 281 (351)
+|..... +..+......+..+...+++. |..++.++.|..+|. +++ ..|. .......+.++.
T Consensus 240 ~~~~g~~------~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~------~~~~----~~~~~~~~~~~~ 301 (330)
T 3hxj_A 240 INPDGTE------KWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGT------EKWN----FETGSWIIATPV 301 (330)
T ss_dssp ECTTSCE------EEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSC------EEEE----EECSSCCCSCCE
T ss_pred ECCCCCE------eEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC-CCc------EEEE----EEcCCccccceE
Confidence 8753321 222222223334455555664 666778889999996 444 1222 222334466777
Q ss_pred EeeeCCCcEEEEecCCCeEEEEecC
Q 048511 282 IIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 282 ~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
..+ ++. |..++.+|.+++...+
T Consensus 302 ~d~--~g~-l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 302 IDE--NGT-IYFGTRNGKFYALFNL 323 (330)
T ss_dssp ECT--TCC-EEEECTTSCEEEEEC-
T ss_pred EcC--CCE-EEEEcCCCeEEEEecc
Confidence 765 554 6668899999988765
No 245
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.56 E-value=3.4e-06 Score=75.66 Aligned_cols=248 Identities=10% Similarity=0.048 Sum_probs=138.3
Q ss_pred CCccEEEEeeC-CCcEEEEecCCCcccceeecccccceeeeEe-e-ecCCeEEecCC------------------ceeEE
Q 048511 47 AISILLVSSSQ-DKVIRIWKLALRGSSANTQSTYRKEVISLAS-Y-IEGPVLVAGSS------------------SYQVS 105 (351)
Q Consensus 47 ~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~------------------~~~~~ 105 (351)
++|++|+.+.. +..|.+.|+.+.+....+..+.......+++ . |++.+++++++ +..+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 47888777654 5579999999988776555444455667776 4 88888877631 11222
Q ss_pred EEEecccc-------ccceEEEEecCCCCCCCCCcccCCCceeEEeecCC------------------------------
Q 048511 106 VESLLIGH-------EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDK------------------------------ 148 (351)
Q Consensus 106 ~~~~~~~h-------~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~------------------------------ 148 (351)
++..-... .+....++++ +++++ +++.+.+.
T Consensus 179 vID~~t~~v~~qI~Vgg~pd~~~~s------pdGk~------~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~ 246 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSGNLDNCDAD------YEGKW------AFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA 246 (595)
T ss_dssp EEETTTTEEEEEEEESSCCCCEEEC------SSSSE------EEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred EEECCCCeEEEEEEeCCCccceEEC------CCCCE------EEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence 22211000 0011235566 66776 66665432
Q ss_pred --------eEEEEeccCCCcce-EEEEEeccccccccceEEEEEcCCCCEEEEEe-eCCeEEEEEcccCcc------cC-
Q 048511 149 --------TMMIWQPEKTTGIW-MNVVTVGELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNVGVDI------DN- 211 (351)
Q Consensus 149 --------~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~~~~------~~- 211 (351)
.|.+.|.++.++.. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+. ..
T Consensus 247 ~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv------g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~ 320 (595)
T 1fwx_A 247 AGDYQELNGVKVVDGRKEASSLFTRYIPI------ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR 320 (595)
T ss_dssp HTCSEEETTEEEEECSGGGCCSSEEEEEE------ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGG
T ss_pred CCCeeEECcEEEEeCcccCCceeEEEEec------CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcc
Confidence 35555555411111 223321 12345789999999887776 568999999986420 00
Q ss_pred cccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccccccc-----ceeEEEEeeeC
Q 048511 212 WQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGH-----DINCVTIIQGK 286 (351)
Q Consensus 212 ~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~ 286 (351)
...+..+. -......++|+|+|...++.-.|++|.+||+........+......+.++..|-. .-..+.++|
T Consensus 321 ~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~-- 397 (595)
T 1fwx_A 321 SAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA-- 397 (595)
T ss_dssp GGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC--
T ss_pred cceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCC--
Confidence 01122222 2345788999999944455566999999998762100000011223333333322 123334567
Q ss_pred CCcEEEEec---CCCeE----------EEEecCchhhhceee
Q 048511 287 GNHRFVSGA---DEKVA----------RVFEAPLSFLKTLNH 315 (351)
Q Consensus 287 ~~~~l~s~~---~dg~v----------~vw~~~~~~~~~~~~ 315 (351)
||++|++.. .|+.+ .++|+++..++.+..
T Consensus 398 DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv~d 439 (595)
T 1fwx_A 398 TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHD 439 (595)
T ss_dssp CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEE
T ss_pred CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEEEEE
Confidence 888888765 24431 778887655555543
No 246
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.50 E-value=4.8e-05 Score=64.15 Aligned_cols=229 Identities=9% Similarity=0.012 Sum_probs=126.9
Q ss_pred CceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEe
Q 048511 30 DWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL 109 (351)
Q Consensus 30 ~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 109 (351)
....+++|. +++++++++..++.|..|+..++.... ...... ... ....++.. . ..
T Consensus 19 ~~p~~i~~d--------~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~--~~~-~~~~~g~~--------~----~~ 74 (322)
T 2fp8_A 19 YAPNSFTFD--------STNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASP--YWN-KAFCENST--------D----AE 74 (322)
T ss_dssp SCCCCEECC--------TTCSSEEEECTTSEEEEECCTTTCEEE-EEESCT--TCC-HHHHTTCC--------C----GG
T ss_pred CCceEEEEc--------CCCCEEEEEcCCCeEEEECCCCCceEE-Eecccc--ccc-cccccccc--------c----hh
Confidence 345678888 778878888888999999876543211 100000 000 00000000 0 00
Q ss_pred ccccccceEEEEecCCCCCCC-CCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC-CC
Q 048511 110 LIGHEDWVYSVQWEPPSTAPS-DGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP-DG 187 (351)
Q Consensus 110 ~~~h~~~v~~l~~~p~~~~~~-~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~ 187 (351)
.......+..+++. + +++ |..+...+.|..+|... +.. ..+..............+++.+ +|
T Consensus 75 ~~~~~~~p~gi~~~------~~~g~-------l~v~d~~~~i~~~d~~~--g~~-~~~~~~~~~~~~~~p~~i~~d~~~G 138 (322)
T 2fp8_A 75 KRPLCGRTYDISYN------LQNNQ-------LYIVDCYYHLSVVGSEG--GHA-TQLATSVDGVPFKWLYAVTVDQRTG 138 (322)
T ss_dssp GHHHHCCEEEEEEE------TTTTE-------EEEEETTTEEEEECTTC--EEC-EEEESEETTEECSCEEEEEECTTTC
T ss_pred ccccCCCCceEEEc------CCCCc-------EEEEECCCCEEEEeCCC--CEE-EEecccCCCCcccccceEEEecCCC
Confidence 00112347788888 4 555 44454455588888765 322 1221000001123467899999 88
Q ss_pred CEEEEEee-----------------CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE-eCCCcEEEE
Q 048511 188 RSILAHGY-----------------GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV-SHDQTTRVF 249 (351)
Q Consensus 188 ~~l~~~~~-----------------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~-~~dg~i~vw 249 (351)
+..++-.. ++.|..||..+++. ..+.........++++|++++|+.+ +.++.|.+|
T Consensus 139 ~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~------~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~ 212 (322)
T 2fp8_A 139 IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET------TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKY 212 (322)
T ss_dssp CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE------EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEE
T ss_pred EEEEECCcccccccccceehcccCCCceEEEEeCCCCEE------EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEE
Confidence 76665432 36788888766531 1111112345679999999866555 556899999
Q ss_pred cCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecC----------CCeEEEEecCchhhhceee
Q 048511 250 APWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD----------EKVARVFEAPLSFLKTLNH 315 (351)
Q Consensus 250 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~----------dg~v~vw~~~~~~~~~~~~ 315 (351)
++..... .....+.... . ...+++.+ +|.+.++... .+.|..++..++.+..+..
T Consensus 213 ~~~~~~~-----~~~~~~~~~~---g-P~gi~~d~--~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~ 277 (322)
T 2fp8_A 213 WLEGPKK-----GTAEVLVKIP---N-PGNIKRNA--DGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPL 277 (322)
T ss_dssp ESSSTTT-----TCEEEEEECS---S-EEEEEECT--TSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEEC
T ss_pred ECCCCcC-----CccceEEeCC---C-CCCeEECC--CCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEEC
Confidence 9875321 1122222221 2 67788888 7877776654 5678888888777666654
No 247
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.47 E-value=0.00037 Score=66.47 Aligned_cols=262 Identities=9% Similarity=0.010 Sum_probs=149.6
Q ss_pred CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeec------
Q 048511 4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQS------ 77 (351)
Q Consensus 4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~------ 77 (351)
.++.|..|+..+ +++..... ..+...|.++... .++.+.+ ++.++-|..||..+.........
T Consensus 191 ~~~Gl~~~~~~~-~~~~~~~~-~~~~~~i~~i~~d--------~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 259 (795)
T 4a2l_A 191 STDGLYTYSITQ-KTFEKVIP-ILGTKQIQAILQQ--------SPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKS 259 (795)
T ss_dssp SSSCEEEEETTT-CCEEECC-----CCCEEEEEEE--------ETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTS
T ss_pred CCCCEEEEeCCC-CeEEEecC-CCCCCeeEEEEEc--------CCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccc
Confidence 344577788776 54433211 1234578888887 6665555 44443488888876543211111
Q ss_pred ccccceeeeEeeecCCeEEecCCceeEEEEE-------ecc--------ccccceEEEEecCCCCCCCCCcccCCCceeE
Q 048511 78 TYRKEVISLASYIEGPVLVAGSSSYQVSVES-------LLI--------GHEDWVYSVQWEPPSTAPSDGVSCQQPSSIL 142 (351)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~--------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~ 142 (351)
.....+.++....+|.+.+.... +-. .+. .+. -....|.++... +++. |.
T Consensus 260 l~~~~i~~i~~d~~g~lWigt~~-Gl~-~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D------~~g~-------lW 324 (795)
T 4a2l_A 260 ISSNYIRSLAMDSQNRLWIGTFN-DLN-IYHEGTDSFASYSSNPVENGSLSQRSVRSIFMD------SQGG-------MW 324 (795)
T ss_dssp CSCSBEEEEEECTTSCEEEEESS-CEE-EEETTTTEEEEECCCTTSTTSCSSSCEEEEEEC------TTSC-------EE
T ss_pred cCCCeEEEEEEcCCCCEEEEeCC-hhh-eEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEe------CCcC-------EE
Confidence 11345677777777776665433 322 111 111 123568888887 5665 67
Q ss_pred EeecCCeEEEEeccCCCcceEEEEEecc--ccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccc--
Q 048511 143 SASMDKTMMIWQPEKTTGIWMNVVTVGE--LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP-- 218 (351)
Q Consensus 143 s~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-- 218 (351)
.|+.++-|..|+... .... .+.... ..-....|.++...+++. |..|+.++-|..||..++....+.....-
T Consensus 325 igt~~~Gl~~~~~~~--~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~ 400 (795)
T 4a2l_A 325 LGTYFGGLNYYHPIR--NRFK-NIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESA 400 (795)
T ss_dssp EEESSSCEEEECGGG--GSSE-EECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC-----
T ss_pred EEECCCCeEEeCCCc--ccce-EEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcc
Confidence 777777899999876 3222 121100 011234689999988876 55677777799998876532111100000
Q ss_pred -ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecc--ccccccceeEEEEeeeCCCcEEEEec
Q 048511 219 -SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVAR--PQVHGHDINCVTIIQGKGNHRFVSGA 295 (351)
Q Consensus 219 -~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~l~s~~ 295 (351)
......|.+++..++++.|..|+.++-|.+||..++.. ..+.. .......|.++...+ ++.+.+...
T Consensus 401 ~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~--------~~~~~~~~~l~~~~v~~i~~d~--~g~lwigt~ 470 (795)
T 4a2l_A 401 RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV--------ENFNQRNSQLVNENVYAILPDG--EGNLWLGTL 470 (795)
T ss_dssp -CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE--------EEECTTTSCCSCSCEEEEEECS--SSCEEEEES
T ss_pred cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE--------EEeecCCCCcCCCeeEEEEECC--CCCEEEEec
Confidence 01235789999988888455677777899999877651 12211 112345688888776 666555543
Q ss_pred CCCeEEEEecCc
Q 048511 296 DEKVARVFEAPL 307 (351)
Q Consensus 296 ~dg~v~vw~~~~ 307 (351)
+ -+.+|+...
T Consensus 471 -~-Gl~~~~~~~ 480 (795)
T 4a2l_A 471 -S-ALVRFNPEQ 480 (795)
T ss_dssp -S-CEEEEETTT
T ss_pred -C-ceeEEeCCC
Confidence 4 467788653
No 248
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.44 E-value=0.00036 Score=66.55 Aligned_cols=261 Identities=9% Similarity=0.091 Sum_probs=146.3
Q ss_pred ceEEEEEccCCCceEEEEeeeec-CCc-eeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511 6 NKIHLYRGQRTGKFVRACELKGH-TDW-IRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV 83 (351)
Q Consensus 6 g~i~vw~~~~~~~~~~~~~~~~h-~~~-V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 83 (351)
+.|.+|+..+ +++.... .++ ... |.++... .++.+.+ ++.++-|..|+..+..............+
T Consensus 150 ~gl~~~~~~~-~~~~~~~--~~~~~~~~i~~i~~d--------~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i 217 (795)
T 4a2l_A 150 EGLIMFDIKE-SKFIDDS--FSTAMHKTIASTLYR--------QGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQI 217 (795)
T ss_dssp TEEEEEETTT-TEEECSS--SCHHHHTCCEEEEEE--------ETTEEEE-EESSSCEEEEETTTCCEEECC----CCCE
T ss_pred CceEEEECCC-CEEEecc--CCCCCCcceEEEEEC--------CCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCee
Confidence 3466777665 4332111 111 123 8888887 6665555 55554588888776543221111123356
Q ss_pred eeeEeeecCCeEEecCCceeEEE------EEecc--------ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCe
Q 048511 84 ISLASYIEGPVLVAGSSSYQVSV------ESLLI--------GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT 149 (351)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~------~~~~~--------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~ 149 (351)
.++....++.+++.....+-... ...+. -....|.++... +++. |..|+.+ -
T Consensus 218 ~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d------~~g~-------lWigt~~-G 283 (795)
T 4a2l_A 218 QAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMD------SQNR-------LWIGTFN-D 283 (795)
T ss_dssp EEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEEC------TTSC-------EEEEESS-C
T ss_pred EEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEc------CCCC-------EEEEeCC-h
Confidence 66666777776665433332211 11111 113568888887 5665 4555555 5
Q ss_pred EEEEeccCCCcceEEEEEecc---ccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccc-cccccccE
Q 048511 150 MMIWQPEKTTGIWMNVVTVGE---LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKV-PSGHFAAV 225 (351)
Q Consensus 150 i~iwd~~~~~~~~~~~~~~~~---~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~~~~~v 225 (351)
|.+||... +.... +.... ..-....|.++..+++|. |..|+.++-|..|+..+.....+..... -.-....|
T Consensus 284 l~~~~~~~--~~~~~-~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V 359 (795)
T 4a2l_A 284 LNIYHEGT--DSFAS-YSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVV 359 (795)
T ss_dssp EEEEETTT--TEEEE-ECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSE
T ss_pred hheEcCCC--CeEEE-EecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCee
Confidence 88999876 43322 21110 111235699999998887 5567777779999876653211111000 01124569
Q ss_pred EEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccc------cccccceeEEEEeeeCCCcEEEEecCCCe
Q 048511 226 MDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARP------QVHGHDINCVTIIQGKGNHRFVSGADEKV 299 (351)
Q Consensus 226 ~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~l~s~~~dg~ 299 (351)
.++...++|.+. .|+.++-|..||..++. +...... ......|.++...+ ++.+|..|+.++-
T Consensus 360 ~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~v~~i~~d~--~g~~lWigt~~~G 428 (795)
T 4a2l_A 360 SCIVEDKDKNLW-IGTNDGGLNLYNPITQR--------FTSYTLQEDESARGIGSNNIKAVYVDE--KKSLVYIGTHAGG 428 (795)
T ss_dssp EEEEECTTSCEE-EEESSSCEEEECTTTCC--------EEEECCC------CCSCSCEEEEEEET--TTTEEEEEETTTE
T ss_pred EEEEECCCCCEE-EEECCCCeEEEcCCCCc--------EEEEecCCCCcccCCCCccEEEEEEcC--CCCEEEEEeCcCc
Confidence 999988888754 47777789999987654 1122111 11234588888877 6774566666667
Q ss_pred EEEEecCc
Q 048511 300 ARVFEAPL 307 (351)
Q Consensus 300 v~vw~~~~ 307 (351)
|.+|+...
T Consensus 429 l~~~d~~~ 436 (795)
T 4a2l_A 429 LSILHRNS 436 (795)
T ss_dssp EEEEETTT
T ss_pred eeEEeCCC
Confidence 88888763
No 249
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.44 E-value=3.5e-05 Score=62.53 Aligned_cols=182 Identities=8% Similarity=-0.027 Sum_probs=112.4
Q ss_pred CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccccee
Q 048511 5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 84 (351)
+++|+++|+.+ ++......+..+. ..-.+++. . +.+.++.-.++.+.++|..+.+.+..+..
T Consensus 43 ~s~v~~iD~~t-g~v~~~i~l~~~~-fgeGi~~~--------g-~~lyv~t~~~~~v~viD~~t~~v~~~i~~------- 104 (266)
T 2iwa_A 43 RSSVRQVALQT-GKVENIHKMDDSY-FGEGLTLL--------N-EKLYQVVWLKNIGFIYDRRTLSNIKNFTH------- 104 (266)
T ss_dssp TCEEEEEETTT-CCEEEEEECCTTC-CEEEEEEE--------T-TEEEEEETTCSEEEEEETTTTEEEEEEEC-------
T ss_pred CCEEEEEECCC-CCEEEEEecCCCc-ceEEEEEe--------C-CEEEEEEecCCEEEEEECCCCcEEEEEEC-------
Confidence 57899999998 7544333333321 22245555 2 23444455688999999987765433321
Q ss_pred eeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEE
Q 048511 85 SLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMN 164 (351)
Q Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 164 (351)
+ ... ...++ +|+.. ++.+..++.|.++|..+ .+...
T Consensus 105 ---------------------------g-~~~--g~glt------~Dg~~------l~vs~gs~~l~viD~~t--~~v~~ 140 (266)
T 2iwa_A 105 ---------------------------Q-MKD--GWGLA------TDGKI------LYGSDGTSILYEIDPHT--FKLIK 140 (266)
T ss_dssp ---------------------------C-SSS--CCEEE------ECSSS------EEEECSSSEEEEECTTT--CCEEE
T ss_pred ---------------------------C-CCC--eEEEE------ECCCE------EEEECCCCeEEEEECCC--CcEEE
Confidence 1 011 12234 45555 66666789999999998 77777
Q ss_pred EEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccc-------------cccEEEEEee
Q 048511 165 VVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH-------------FAAVMDISWS 231 (351)
Q Consensus 165 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~-------------~~~v~~v~~s 231 (351)
.+.+......-..+..+.|. ++...+....++.|.+.|..+++. +..+... ......|+|+
T Consensus 141 ~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V-----~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~ 214 (266)
T 2iwa_A 141 KHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTL-----LGWILLPNLRKKLIDEGFRDIDVLNGIAWD 214 (266)
T ss_dssp EEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCE-----EEEEECHHHHHHHHHTTCTTCCCEEEEEEE
T ss_pred EEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcE-----EEEEECCCcccccccccccccCceEEEEEc
Confidence 77654322222246677887 665444444678999999998743 3333211 1356899999
Q ss_pred cCCCEE-EEEeCCCcEEEEcCCCc
Q 048511 232 RSSDYL-LSVSHDQTTRVFAPWKN 254 (351)
Q Consensus 232 p~~~~l-~s~~~dg~i~vwd~~~~ 254 (351)
|+++.| +++...+.|.+.++...
T Consensus 215 ~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 215 QENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp TTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CCCCEEEEECCCCCeEEEEEEecc
Confidence 998765 55656788888887543
No 250
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.43 E-value=0.00059 Score=58.16 Aligned_cols=162 Identities=7% Similarity=-0.113 Sum_probs=99.0
Q ss_pred eEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-e
Q 048511 117 VYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-Y 195 (351)
Q Consensus 117 v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~ 195 (351)
...+++.+ ..+++ +++-...+.|.+.++.. .. ...+. ...-.....++++|.+..|+.+. .
T Consensus 118 p~glavd~-----~~g~l------y~~d~~~~~I~~~~~dG--~~-~~~l~----~~~l~~P~~iavdp~~g~ly~td~~ 179 (349)
T 3v64_C 118 PGGLAVDW-----VHDKL------YWTDSGTSRIEVANLDG--AH-RKVLL----WQSLEKPRAIALHPMEGTIYWTDWG 179 (349)
T ss_dssp CCEEEEET-----TTTEE------EEEETTTTEEEEEETTS--CS-CEEEE----CTTCSCEEEEEEETTTTEEEEEECS
T ss_pred ccEEEEec-----CCCeE------EEEcCCCCeEEEEcCCC--Cc-eEEEE----eCCCCCcceEEEecCcCeEEEeccC
Confidence 45677773 34555 66666678899998875 22 22221 12223468899999766665554 3
Q ss_pred C-CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE-eCCCcEEEEcCCCccccccCccceEEecccccc
Q 048511 196 G-GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV-SHDQTTRVFAPWKNVASLMGENSWHEVARPQVH 273 (351)
Q Consensus 196 d-g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 273 (351)
. +.|..+++..... .......-.....|+++|++..|+.+ ...+.|..+|+..... ..+.. ..
T Consensus 180 ~~~~I~r~~~dG~~~-----~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~--------~~~~~--~~ 244 (349)
T 3v64_C 180 NTPRIEASSMDGSGR-----RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR--------KAVIS--QG 244 (349)
T ss_dssp SSCEEEEEETTSCSC-----EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------EEEEC--SS
T ss_pred CCCEEEEEeCCCCCc-----EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce--------EEEEe--CC
Confidence 4 7888888876421 11112223457899999876665544 4567899999864331 11111 11
Q ss_pred ccceeEEEEeeeCCCcEEEEecCCCeEEEEe-cCchhhhcee
Q 048511 274 GHDINCVTIIQGKGNHRFVSGADEKVARVFE-APLSFLKTLN 314 (351)
Q Consensus 274 ~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~-~~~~~~~~~~ 314 (351)
......+++ . ++.++++-...+.|..++ ..++.+..+.
T Consensus 245 ~~~P~giav-~--~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 245 LPHPFAITV-F--EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp CSSEEEEEE-E--TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCceEEEE-E--CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 223567777 4 477778888888999888 5576666554
No 251
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.42 E-value=0.00013 Score=59.60 Aligned_cols=160 Identities=9% Similarity=-0.085 Sum_probs=98.6
Q ss_pred ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-
Q 048511 116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG- 194 (351)
Q Consensus 116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~- 194 (351)
.+..++|.| ..+.+ +++-...+.|..+++.. .... .+. .........+++++++..|+.+.
T Consensus 37 ~~~gi~~d~-----~~~~l------y~~d~~~~~I~~~~~~g--~~~~-~~~----~~~~~~p~~ia~d~~~~~lyv~d~ 98 (267)
T 1npe_A 37 VIIGLAFDC-----VDKVV------YWTDISEPSIGRASLHG--GEPT-TII----RQDLGSPEGIALDHLGRTIFWTDS 98 (267)
T ss_dssp EEEEEEEET-----TTTEE------EEEETTTTEEEEEESSS--CCCE-EEE----CTTCCCEEEEEEETTTTEEEEEET
T ss_pred cEEEEEEec-----CCCEE------EEEECCCCEEEEEecCC--CCcE-EEE----ECCCCCccEEEEEecCCeEEEEEC
Confidence 467899994 23455 56666678999999875 3222 221 11223578899999766565554
Q ss_pred eCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC---CCcEEEEcCCCccccccCccceEEecccc
Q 048511 195 YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH---DQTTRVFAPWKNVASLMGENSWHEVARPQ 271 (351)
Q Consensus 195 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 271 (351)
..+.|.++++..... .............++++|++..|+.+.. .+.|..+++..... ..+..
T Consensus 99 ~~~~I~~~~~~g~~~-----~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~--------~~~~~-- 163 (267)
T 1npe_A 99 QLDRIEVAKMDGTQR-----RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--------RILAQ-- 163 (267)
T ss_dssp TTTEEEEEETTSCSC-----EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC--------EEEEC--
T ss_pred CCCEEEEEEcCCCCE-----EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc--------EEEEE--
Confidence 568999999875421 1111112245689999996665554443 36888888754321 12211
Q ss_pred ccccceeEEEEeeeCCC-cEEEEecCCCeEEEEecCchhh
Q 048511 272 VHGHDINCVTIIQGKGN-HRFVSGADEKVARVFEAPLSFL 310 (351)
Q Consensus 272 ~~~~~i~~~~~~~~~~~-~~l~s~~~dg~v~vw~~~~~~~ 310 (351)
........+++++ ++ .++++-...+.|.+++..+...
T Consensus 164 ~~~~~P~gia~d~--~~~~lyv~d~~~~~I~~~~~~g~~~ 201 (267)
T 1npe_A 164 DNLGLPNGLTFDA--FSSQLCWVDAGTHRAECLNPAQPGR 201 (267)
T ss_dssp TTCSCEEEEEEET--TTTEEEEEETTTTEEEEEETTEEEE
T ss_pred CCCCCCcEEEEcC--CCCEEEEEECCCCEEEEEecCCCce
Confidence 1123478899998 54 5556666788999999885433
No 252
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.42 E-value=0.00032 Score=60.79 Aligned_cols=162 Identities=7% Similarity=-0.096 Sum_probs=98.3
Q ss_pred eEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee-
Q 048511 117 VYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY- 195 (351)
Q Consensus 117 v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~- 195 (351)
...+++.+ ..+.+ +++-...+.|.+.++.. .. ...+. ...-.....++++|.+..|+.+..
T Consensus 161 p~glavd~-----~~g~l------Y~~d~~~~~I~~~~~dg--~~-~~~l~----~~~l~~P~giavdp~~g~ly~td~~ 222 (386)
T 3v65_B 161 PGGLAVDW-----VHDKL------YWTDSGTSRIEVANLDG--AH-RKVLL----WQSLEKPRAIALHPMEGTIYWTDWG 222 (386)
T ss_dssp CCCEEEET-----TTTEE------EEEETTTTEEEECBTTS--CS-CEEEE----CSSCSCEEEEEEETTTTEEEEEECS
T ss_pred ccEEEEEe-----CCCeE------EEEcCCCCeEEEEeCCC--Cc-eEEee----cCCCCCCcEEEEEcCCCeEEEeccC
Confidence 34566663 34555 66666677888888764 22 22221 122235688999997776665553
Q ss_pred C-CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE-eCCCcEEEEcCCCccccccCccceEEecccccc
Q 048511 196 G-GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV-SHDQTTRVFAPWKNVASLMGENSWHEVARPQVH 273 (351)
Q Consensus 196 d-g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 273 (351)
. +.|..+++..... .......-.....|+++|++..|+.+ +..+.|..+|+..... ..+.. ..
T Consensus 223 ~~~~I~r~~~dG~~~-----~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~--------~~~~~--~~ 287 (386)
T 3v65_B 223 NTPRIEASSMDGSGR-----RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR--------KAVIS--QG 287 (386)
T ss_dssp SSCEEEEEETTSCSC-----EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC--------EEEEC--SS
T ss_pred CCCEEEEEeCCCCCc-----EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee--------EEEEE--CC
Confidence 3 6888888876421 11112223457899999866665544 4567899999864331 11111 11
Q ss_pred ccceeEEEEeeeCCCcEEEEecCCCeEEEEe-cCchhhhcee
Q 048511 274 GHDINCVTIIQGKGNHRFVSGADEKVARVFE-APLSFLKTLN 314 (351)
Q Consensus 274 ~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~-~~~~~~~~~~ 314 (351)
......+++ . ++.++++-...+.|..++ ..+..+..+.
T Consensus 288 ~~~P~giav-~--~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 288 LPHPFAITV-F--EDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp CSSEEEEEE-E--TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCceEEEE-E--CCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 223567777 3 477778888889999998 5576666654
No 253
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.38 E-value=0.00017 Score=65.93 Aligned_cols=152 Identities=9% Similarity=-0.066 Sum_probs=87.1
Q ss_pred eEEEEeccCCCcceEEEEEeccc-----cccccceEEEEEcCCCC---EEEEEeeCCeEEEEEcccCcccCcccccc-c-
Q 048511 149 TMMIWQPEKTTGIWMNVVTVGEL-----SHSALGFYGGHWSPDGR---SILAHGYGGAFHLWRNVGVDIDNWQPQKV-P- 218 (351)
Q Consensus 149 ~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~i~~i~~~~~~~---~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~- 218 (351)
.|..+|.++ ++.+-.++.... .....++. +....+|+ .++.++.+|.++++|..+++......... .
T Consensus 273 ~v~Ald~~t--G~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~ 349 (571)
T 2ad6_A 273 TIWGRDLDT--GMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVN 349 (571)
T ss_dssp EEEEEETTT--CCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred EEEEEecCC--CcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcc
Confidence 589999998 666555553211 01112222 22234674 56778889999999998875311000000 0
Q ss_pred -----c-cccccE--------------------------EEEEeecCCCEEEEEe-------------------------
Q 048511 219 -----S-GHFAAV--------------------------MDISWSRSSDYLLSVS------------------------- 241 (351)
Q Consensus 219 -----~-~~~~~v--------------------------~~v~~sp~~~~l~s~~------------------------- 241 (351)
. ....++ ..++++|+..+|+..+
T Consensus 350 w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 429 (571)
T 2ad6_A 350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATL 429 (571)
T ss_dssp SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred ccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccc
Confidence 0 000011 2457788777766543
Q ss_pred ------------CCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-ch
Q 048511 242 ------------HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LS 308 (351)
Q Consensus 242 ------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~ 308 (351)
.++.|..||..+++ ..|+.-.. ..+....+.. .+.+++.++.|+.|+.||.. ++
T Consensus 430 ~~~~~~~~~~~~~~g~l~a~D~~tG~------~~W~~~~~-----~~~~~~~~~t--~gg~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 430 AMYPGPNGPTKKEMGQIRAFDLTTGK------AKWTKWEK-----FAAWGGTLYT--KGGLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp EEEECTTSTTSCCCEEEEEECTTTCC------EEEEEEES-----SCCCSBCEEE--TTTEEEEECTTSEEEEEETTTCC
T ss_pred eeccCccccCCCCCCeEEEEECCCCC------EEEEecCC-----CCccceeEEE--CCCEEEEEcCCCeEEEEECCCCC
Confidence 35789999998886 24443211 1222333333 45677778999999999976 87
Q ss_pred hhhceeec
Q 048511 309 FLKTLNHA 316 (351)
Q Consensus 309 ~~~~~~~~ 316 (351)
.+.+++..
T Consensus 497 ~lw~~~~~ 504 (571)
T 2ad6_A 497 ELWNFKMP 504 (571)
T ss_dssp EEEEEECS
T ss_pred EEEEEeCC
Confidence 77766543
No 254
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.33 E-value=5.5e-05 Score=60.74 Aligned_cols=170 Identities=11% Similarity=0.095 Sum_probs=107.5
Q ss_pred EEEEecccccc--ceEEEEecCCCCCCCCCcccCCCceeEEeecCC--eEEEEeccCCCcceEEEEEeccccccccceEE
Q 048511 105 SVESLLIGHED--WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDK--TMMIWQPEKTTGIWMNVVTVGELSHSALGFYG 180 (351)
Q Consensus 105 ~~~~~~~~h~~--~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~ 180 (351)
++.+.+. |.. ....|.|+ ++.+ +.+.+.+| .|+++|+++ ++.+..+.+.. ...--.
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~-------~~~L------yestG~~g~S~v~~vD~~T--gkv~~~~~l~~----~~FgeG 91 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR-------NGYF------YESTGLNGRSSIRKVDIES--GKTLQQIELGK----RYFGEG 91 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE-------TTEE------EEEEEETTEEEEEEECTTT--CCEEEEEECCT----TCCEEE
T ss_pred EEEEEec-CCCCcccceEEEE-------CCEE------EEECCCCCCceEEEEECCC--CcEEEEEecCC----ccceeE
Confidence 4444443 433 34788887 3566 77777776 899999999 87777776321 111123
Q ss_pred EEEcCCCCEEEEEe-eCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccccc
Q 048511 181 GHWSPDGRSILAHG-YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM 259 (351)
Q Consensus 181 i~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~ 259 (351)
+++ ++..|+... .++.+.+||..+. +.+.++.... ....++++++.|+.+..++.|.++|..+.+.
T Consensus 92 it~--~g~~ly~ltw~~~~v~v~D~~t~-----~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v--- 158 (262)
T 3nol_A 92 ISD--WKDKIVGLTWKNGLGFVWNIRNL-----RQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTP--- 158 (262)
T ss_dssp EEE--ETTEEEEEESSSSEEEEEETTTC-----CEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSE---
T ss_pred EEE--eCCEEEEEEeeCCEEEEEECccC-----cEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeE---
Confidence 444 345555444 6899999999886 4455554322 2234446777777766678899999988762
Q ss_pred CccceEEecccccccc---ceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceee
Q 048511 260 GENSWHEVARPQVHGH---DINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNH 315 (351)
Q Consensus 260 ~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~ 315 (351)
...+... ..+. .++.+.|. ++.+++..-.+..|.+.|.. ++.+..+.-
T Consensus 159 ----~~~I~V~-~~g~~~~~lNELe~~---~G~lyan~w~~~~I~vIDp~tG~V~~~Id~ 210 (262)
T 3nol_A 159 ----VRTITVT-AHGEELPELNELEWV---DGEIFANVWQTNKIVRIDPETGKVTGIIDL 210 (262)
T ss_dssp ----EEEEECE-ETTEECCCEEEEEEE---TTEEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred ----EEEEEec-cCCccccccceeEEE---CCEEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence 1122111 1122 24557775 47777777788899999986 777776654
No 255
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.32 E-value=0.0011 Score=63.08 Aligned_cols=244 Identities=8% Similarity=-0.029 Sum_probs=136.9
Q ss_pred CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccccee--------ecccccceeeeEeeecCCeEEecCC
Q 048511 29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANT--------QSTYRKEVISLASYIEGPVLVAGSS 100 (351)
Q Consensus 29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~ 100 (351)
...|.++... .++. |..|+.++-|..++.......... .......+.++....+|.+.+....
T Consensus 312 ~~~v~~i~~D--------~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~ 382 (781)
T 3v9f_A 312 NASARYIFQD--------SFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDG 382 (781)
T ss_dssp SSCEEEEEEC--------SSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBS
T ss_pred CCeEEEEEEe--------CCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCC
Confidence 3578888887 6564 555666667888887654322111 0111334667777777776655423
Q ss_pred ceeEEE------EEec----cccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecc
Q 048511 101 SYQVSV------ESLL----IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGE 170 (351)
Q Consensus 101 ~~~~~~------~~~~----~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 170 (351)
.+-... ...+ ......|.++... +++. |..|+.++-+..+|.++ +... .+...
T Consensus 383 ~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d------~~g~-------lWigt~~~Gl~~~~~~~--~~~~-~~~~~- 445 (781)
T 3v9f_A 383 GGINVFENGKRVAIYNKENRELLSNSVLCSLKD------SEGN-------LWFGTYLGNISYYNTRL--KKFQ-IIELE- 445 (781)
T ss_dssp SCEEEEETTEEEEECC-----CCCSBEEEEEEC------TTSC-------EEEEETTEEEEEECSSS--CEEE-ECCST-
T ss_pred CcEEEEECCCCeEEEccCCCCCCCcceEEEEEC------CCCC-------EEEEeccCCEEEEcCCC--CcEE-EeccC-
Confidence 222111 1111 1123568888877 5555 55677767788998876 4322 12110
Q ss_pred ccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEc
Q 048511 171 LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFA 250 (351)
Q Consensus 171 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd 250 (351)
......|.++...+++. |..++. +-|..||..+++...+............|.++...++|.+.+ |+.++-+..||
T Consensus 446 -~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~ 521 (781)
T 3v9f_A 446 -KNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYT 521 (781)
T ss_dssp -TTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEEC
T ss_pred -CCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEe
Confidence 12345789999888776 444555 568899987754211110000001135789999998887655 44444577888
Q ss_pred CCCccccccCccceEEecccc-ccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhce
Q 048511 251 PWKNVASLMGENSWHEVARPQ-VHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTL 313 (351)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 313 (351)
..+.. +....... .....|.++...+ ++.+.++.. +|.|..||.....+..+
T Consensus 522 ~~~~~--------~~~~~~~~~l~~~~i~~i~~d~--~g~lWi~T~-~Glv~~~d~~~~~~~~~ 574 (781)
T 3v9f_A 522 PDMQL--------VRKFNQYEGFCSNTINQIYRSS--KGQMWLATG-EGLVCFPSARNFDYQVF 574 (781)
T ss_dssp TTCCE--------EEEECTTTTCSCSCEEEEEECT--TSCEEEEET-TEEEEESCTTTCCCEEE
T ss_pred CCCCe--------EEEccCCCCCCCCeeEEEEECC--CCCEEEEEC-CCceEEECCCCCcEEEc
Confidence 76554 12222111 2234588888776 666555544 77768888764433333
No 256
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.30 E-value=0.0002 Score=56.94 Aligned_cols=173 Identities=10% Similarity=0.099 Sum_probs=102.3
Q ss_pred ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceee
Q 048511 6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVIS 85 (351)
Q Consensus 6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 85 (351)
.+|+++|+++ ++......+..+. ---.+++. ++++....-.++.+.++|..+.+.+..+..
T Consensus 43 S~v~~vD~~t-gkv~~~~~l~~~~-fgeGi~~~---------~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~-------- 103 (243)
T 3mbr_X 43 SSVRKVDLET-GRILQRAEVPPPY-FGAGIVAW---------RDRLIQLTWRNHEGFVYDLATLTPRARFRY-------- 103 (243)
T ss_dssp CEEEEEETTT-CCEEEEEECCTTC-CEEEEEEE---------TTEEEEEESSSSEEEEEETTTTEEEEEEEC--------
T ss_pred ceEEEEECCC-CCEEEEEeCCCCc-ceeEEEEe---------CCEEEEEEeeCCEEEEEECCcCcEEEEEeC--------
Confidence 5899999999 7654433333221 11234444 234444455788999999988766544331
Q ss_pred eEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEE
Q 048511 86 LASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNV 165 (351)
Q Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 165 (351)
.+ .+ ..++ .++.. |..+..++.|.++|..+ .+.+..
T Consensus 104 -------------------------~~-~G--wglt--------~dg~~------L~vSdgs~~l~~iDp~t--~~~~~~ 139 (243)
T 3mbr_X 104 -------------------------PG-EG--WALT--------SDDSH------LYMSDGTAVIRKLDPDT--LQQVGS 139 (243)
T ss_dssp -------------------------SS-CC--CEEE--------ECSSC------EEEECSSSEEEEECTTT--CCEEEE
T ss_pred -------------------------CC-Cc--eEEe--------eCCCE------EEEECCCCeEEEEeCCC--CeEEEE
Confidence 11 11 2343 23444 55556688999999998 777777
Q ss_pred EEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc--------cccccEEEEEeecCCCEE
Q 048511 166 VTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS--------GHFAAVMDISWSRSSDYL 237 (351)
Q Consensus 166 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--------~~~~~v~~v~~sp~~~~l 237 (351)
+.+......-..+..+.+. +|+..+....+..|.+.|..+++....-.+..+. ......+.|+++|+++.|
T Consensus 140 I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~l 218 (243)
T 3mbr_X 140 IKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRL 218 (243)
T ss_dssp EECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEE
T ss_pred EEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEE
Confidence 7754322222345566665 5665555546789999999887532111111111 122467899999988777
Q ss_pred EEEeC
Q 048511 238 LSVSH 242 (351)
Q Consensus 238 ~s~~~ 242 (351)
+..+.
T Consensus 219 fVTGK 223 (243)
T 3mbr_X 219 FVTGK 223 (243)
T ss_dssp EEEET
T ss_pred EEECC
Confidence 66654
No 257
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.29 E-value=0.00029 Score=56.81 Aligned_cols=184 Identities=10% Similarity=0.079 Sum_probs=117.3
Q ss_pred EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCC
Q 048511 108 SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG 187 (351)
Q Consensus 108 ~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 187 (351)
+.+.+-.+.+..++|.| ..+.+ +++...++.|...|+. +..+..+.+. .....-.+++.+++
T Consensus 20 ~~l~g~~~~lSGla~~~-----~~~~L------~aV~d~~~~I~~ld~~---g~v~~~i~l~----g~~D~EGIa~~~~g 81 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSA-----QSNTL------FSTINKPAAIVEMTTN---GDLIRTIPLD----FVKDLETIEYIGDN 81 (255)
T ss_dssp EECTTCCSCEEEEEEET-----TTTEE------EEEEETTEEEEEEETT---CCEEEEEECS----SCSSEEEEEECSTT
T ss_pred eECCCcccCcceeEEeC-----CCCEE------EEEECCCCeEEEEeCC---CCEEEEEecC----CCCChHHeEEeCCC
Confidence 45677777899999995 33445 6667778888888876 5566666532 12457788999888
Q ss_pred CEEEEEeeCCeEEEEEcccCcc-cCccccc-cc--ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccc
Q 048511 188 RSILAHGYGGAFHLWRNVGVDI-DNWQPQK-VP--SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENS 263 (351)
Q Consensus 188 ~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~-~~--~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 263 (351)
.++++.-.++.+.++++..... ....... .+ .........|+|+|.++.|.++.+.....||.+..... ...
T Consensus 82 ~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~----~~~ 157 (255)
T 3qqz_A 82 QFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLS----SNE 157 (255)
T ss_dssp EEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTC----SSC
T ss_pred EEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEccccc----CCc
Confidence 8777766778999998865421 0000000 11 12344578999999998877777665555665541100 001
Q ss_pred eEEecc----ccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhcee
Q 048511 264 WHEVAR----PQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLN 314 (351)
Q Consensus 264 ~~~~~~----~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 314 (351)
...... -..+-..+..++++| ..+.+++.......+.++|..++.+..+.
T Consensus 158 l~i~~~~~~~~~~~~~d~S~l~~dp-~tg~lliLS~~s~~L~~~d~~g~~~~~~~ 211 (255)
T 3qqz_A 158 LHISKDKALQRQFTLDDVSGAEFNQ-QKNTLLVLSHESRALQEVTLVGEVIGEMS 211 (255)
T ss_dssp CEEEECHHHHHTCCSSCCCEEEEET-TTTEEEEEETTTTEEEEECTTCCEEEEEE
T ss_pred eeeecchhhccccccCCceeEEEcC-CCCeEEEEECCCCeEEEEcCCCCEEEEEE
Confidence 111110 012234589999999 46778888889999999999988655543
No 258
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.27 E-value=2.8e-05 Score=62.47 Aligned_cols=174 Identities=9% Similarity=-0.009 Sum_probs=104.3
Q ss_pred CCCCceEEEEEccCCCceEEEEeeeecCCceeE--EEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccc
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRS--LDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTY 79 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~--l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~ 79 (351)
.+.+|.|+++|+++ ++..... +.. .... +++. . +++.+..-.++.+.++|..+.+.+..+..
T Consensus 71 tG~~g~v~~iD~~T-gkv~~~~-l~~---~~FgeGit~~--------g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~-- 134 (268)
T 3nok_A 71 TGHQGTLRQLSLES-AQPVWME-RLG---NIFAEGLASD--------G-ERLYQLTWTEGLLFTWSGMPPQRERTTRY-- 134 (268)
T ss_dssp ETTTTEEEECCSSC-SSCSEEE-ECT---TCCEEEEEEC--------S-SCEEEEESSSCEEEEEETTTTEEEEEEEC--
T ss_pred cCCCCEEEEEECCC-CcEEeEE-CCC---CcceeEEEEe--------C-CEEEEEEccCCEEEEEECCcCcEEEEEeC--
Confidence 35677899999998 7543333 332 3333 5554 2 33444455788999999998766544331
Q ss_pred ccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCC
Q 048511 80 RKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTT 159 (351)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 159 (351)
.++ -+.+++ ++.. |+.+..++.|.++|.++
T Consensus 135 -------------------------------~~e---GwGLt~--------Dg~~------L~vSdGs~~l~~iDp~T-- 164 (268)
T 3nok_A 135 -------------------------------SGE---GWGLCY--------WNGK------LVRSDGGTMLTFHEPDG-- 164 (268)
T ss_dssp -------------------------------SSC---CCCEEE--------ETTE------EEEECSSSEEEEECTTT--
T ss_pred -------------------------------CCc---eeEEec--------CCCE------EEEECCCCEEEEEcCCC--
Confidence 111 123332 3444 55556688999999998
Q ss_pred cceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccc--------ccccccEEEEEee
Q 048511 160 GIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP--------SGHFAAVMDISWS 231 (351)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--------~~~~~~v~~v~~s 231 (351)
.+.+..+.+......-..+..+.|. +|+..+....+..|.+.|..+++....-.+..+ .......+.|+++
T Consensus 165 ~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~d 243 (268)
T 3nok_A 165 FALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVE 243 (268)
T ss_dssp CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEEC
T ss_pred CeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEc
Confidence 7777777754432233345667776 666555444678999999988753211111101 1122467899999
Q ss_pred cCCCEEEEEeC
Q 048511 232 RSSDYLLSVSH 242 (351)
Q Consensus 232 p~~~~l~s~~~ 242 (351)
|+++.|+..+.
T Consensus 244 p~~~rlfVTGK 254 (268)
T 3nok_A 244 PGSGRIFMTGK 254 (268)
T ss_dssp TTTCCEEEEET
T ss_pred CCCCEEEEeCC
Confidence 98766655543
No 259
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.26 E-value=0.0018 Score=56.34 Aligned_cols=232 Identities=9% Similarity=-0.035 Sum_probs=132.2
Q ss_pred ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCc-cEEEEeeCCCcEEEEecCCCcccceeeccccccee
Q 048511 6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAIS-ILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84 (351)
Q Consensus 6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 84 (351)
..|+..+++. ..+..+ ......+..|+|. +.+ .++++-...+.|..+++..........
T Consensus 92 ~~I~~i~l~~-~~~~~~---~~~~~~~~~l~~d--------~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~-------- 151 (400)
T 3p5b_L 92 HEVRKMTLDR-SEYTSL---IPNLRNVVALDTE--------VASNRIYWSDLSQRMICSTQLDRAHGVSSYD-------- 151 (400)
T ss_dssp TEEEEECTTS-CSCEEE---ECSCSCEEEEEEE--------TTTTEEEEEETTTTEEEEEEC------CCCE--------
T ss_pred ceeEEEccCC-cceeEe---ccccCcceEEeee--------eccCceEEEecCCCeEEEEEcccCCCCCcce--------
Confidence 4566666665 333222 2234567889998 544 444444556778878776422100000
Q ss_pred eeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEE
Q 048511 85 SLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMN 164 (351)
Q Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 164 (351)
..+.........+++.+ ..+++ +++-...+.|.+.++.. .....
T Consensus 152 -----------------------~~~~~~~~~p~glavD~-----~~~~l------Y~~d~~~~~I~~~~~~g--~~~~~ 195 (400)
T 3p5b_L 152 -----------------------TVISRDIQAPDGLAVDW-----IHSNI------YWTDSVLGTVSVADTKG--VKRKT 195 (400)
T ss_dssp -----------------------EEECSSCSCEEEEEEET-----TTTEE------EEEETTTTEEEEECTTT--CSEEE
T ss_pred -----------------------EEEeCCCCCcccEEEEe-----cCCce------EEEECCCCeEEEEeCCC--CceEE
Confidence 01111233567788873 24555 66666778899998875 32222
Q ss_pred EEEeccccccccceEEEEEcCCCCEEEEEee--CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE-e
Q 048511 165 VVTVGELSHSALGFYGGHWSPDGRSILAHGY--GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV-S 241 (351)
Q Consensus 165 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~-~ 241 (351)
.+. ..-.....++++|.+..|+.+.. .+.|...++..... .......-.....|++++++..|+.+ +
T Consensus 196 l~~-----~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~-----~~~~~~~l~~P~glavd~~~~~lY~aD~ 265 (400)
T 3p5b_L 196 LFR-----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-----YSLVTENIQWPNGITLDLLSGRLYWVDS 265 (400)
T ss_dssp EEE-----CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC-----EEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred EEe-----CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc-----EEEEECCCCceEEEEEEeCCCEEEEEEC
Confidence 221 22234688999997776666553 37888888876421 11112223467899999877766655 4
Q ss_pred CCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe-cCchhhhcee
Q 048511 242 HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE-APLSFLKTLN 314 (351)
Q Consensus 242 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~-~~~~~~~~~~ 314 (351)
....|..+|+..... ..+............+++. ++.++++-...+.|..++ ..++.+..+.
T Consensus 266 ~~~~I~~~d~dG~~~--------~~~~~~~~~l~~P~gl~v~---~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 266 KLHSISSIDVNGGNR--------KTILEDEKRLAHPFSLAVF---EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp TTTEEEEEETTSCCC--------EEEEECSSTTSSEEEEEEE---TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred CCCEEEEEeCCCCcc--------EEEEeCCCCCCCCEEEEEe---CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 567899999865431 1221111111224567763 466777777888899888 4566665554
No 260
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.26 E-value=0.0014 Score=54.98 Aligned_cols=232 Identities=9% Similarity=-0.032 Sum_probs=133.9
Q ss_pred CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCc-cEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511 5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAIS-ILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV 83 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 83 (351)
...|+..++.. .++..+ +. ....+.+++|. +.+ .++++-...+.|..+++.....-....
T Consensus 9 ~~~I~~i~~~~-~~~~~~--~~-~~~~p~g~~~d--------~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~------- 69 (316)
T 1ijq_A 9 RHEVRKMTLDR-SEYTSL--IP-NLRNVVALDTE--------VASNRIYWSDLSQRMICSTQLDRAHGVSSYD------- 69 (316)
T ss_dssp BSSEEEEETTS-CCCEEE--EC-SCSSEEEEEEE--------TTTTEEEEEETTTTEEEEEEC--------CE-------
T ss_pred CCeEEEEECCC-cceEeh--hc-CCCceEEEEEE--------eCCCEEEEEECCCCcEEEEECCCCCCCcccE-------
Confidence 45688888887 543332 22 34567899999 544 455555566888888876521000000
Q ss_pred eeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceE
Q 048511 84 ISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWM 163 (351)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 163 (351)
..+...-.....+++.+ ..+++ +++-...+.|.+.++.. .. .
T Consensus 70 ------------------------~~~~~~~~~p~glavd~-----~~~~l------y~~d~~~~~I~~~~~~g--~~-~ 111 (316)
T 1ijq_A 70 ------------------------TVISRDIQAPDGLAVDW-----IHSNI------YWTDSVLGTVSVADTKG--VK-R 111 (316)
T ss_dssp ------------------------EEECSSCSCCCEEEEET-----TTTEE------EEEETTTTEEEEEETTS--SS-E
T ss_pred ------------------------EEEeCCCCCcCEEEEee-----cCCeE------EEEECCCCEEEEEeCCC--Cc-e
Confidence 00111112346777773 24455 56666778899999874 22 2
Q ss_pred EEEEeccccccccceEEEEEcCCCCEEEEEeeC--CeEEEEEcccCcccCccccccc-ccccccEEEEEeecCCCEEEEE
Q 048511 164 NVVTVGELSHSALGFYGGHWSPDGRSILAHGYG--GAFHLWRNVGVDIDNWQPQKVP-SGHFAAVMDISWSRSSDYLLSV 240 (351)
Q Consensus 164 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--g~i~~~d~~~~~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~l~s~ 240 (351)
..+.. ..-.....++++|.+..|+.+... +.|..+++.... ...+ ...-.....++++|++..|+.+
T Consensus 112 ~~~~~----~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~------~~~~~~~~~~~P~gla~d~~~~~lY~~ 181 (316)
T 1ijq_A 112 KTLFR----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD------IYSLVTENIQWPNGITLDLLSGRLYWV 181 (316)
T ss_dssp EEEEE----CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC------EEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred EEEEE----CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC------eEEEEECCCCCceEEEEeccCCEEEEE
Confidence 22211 122356889999977766655543 688888886542 1111 1223467899999877666544
Q ss_pred -eCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec-Cchhhhcee
Q 048511 241 -SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA-PLSFLKTLN 314 (351)
Q Consensus 241 -~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~-~~~~~~~~~ 314 (351)
+..+.|..+|+..... +.+............+++. ++.++++-...+.|..++. .++.+..+.
T Consensus 182 D~~~~~I~~~d~dg~~~--------~~~~~~~~~~~~P~giav~---~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 182 DSKLHSISSIDVNGGNR--------KTILEDEKRLAHPFSLAVF---EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp ETTTTEEEEEETTSCSC--------EEEEECTTTTSSEEEEEEE---TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred ECCCCeEEEEecCCCce--------EEEeecCCccCCcEEEEEE---CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 4567899999864331 1221111111235677774 4677778788889999986 466555554
No 261
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.25 E-value=0.0012 Score=55.33 Aligned_cols=229 Identities=7% Similarity=-0.064 Sum_probs=133.2
Q ss_pred CceEEEEEccCCC-ceEEEEeeeecCCceeEEEeeCCcccCCCCC-ccEEEEeeCCCcEEEEecCCCcccceeecccccc
Q 048511 5 DNKIHLYRGQRTG-KFVRACELKGHTDWIRSLDFSLPVCTSGEAI-SILLVSSSQDKVIRIWKLALRGSSANTQSTYRKE 82 (351)
Q Consensus 5 dg~i~vw~~~~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 82 (351)
...|+..+++... .... .+.+ ...+.+|+|. +. +.++.+-...+.|..+++..........
T Consensus 12 ~~~I~~i~l~~~~~~~~~--~~~~-~~~~~~ld~d--------~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~------ 74 (318)
T 3sov_A 12 RRDLRLVDATNGKENATI--VVGG-LEDAAAVDFV--------FSHGLIYWSDVSEEAIKRTEFNKTESVQNVV------ 74 (318)
T ss_dssp EEEEEEEETTCTTSCCEE--EEEE-EEEEEEEEEE--------GGGTEEEEEETTTTEEEEEETTSSSCCCEEE------
T ss_pred cCeEEEEECCCCceEEEE--EecC-CCccEEEEEE--------eCCCEEEEEECCCCcEEEEEccCCCceEEEE------
Confidence 4578888887621 1211 1111 2356689998 53 4555555567788888877542211000
Q ss_pred eeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcce
Q 048511 83 VISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIW 162 (351)
Q Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 162 (351)
...-.....+++.+ ..+++ +++-...+.|.++++.. . .
T Consensus 75 ----------------------------~~~l~~p~glavd~-----~~g~l------y~~d~~~~~I~~~~~dG--~-~ 112 (318)
T 3sov_A 75 ----------------------------VSGLLSPDGLACDW-----LGEKL------YWTDSETNRIEVSNLDG--S-L 112 (318)
T ss_dssp ----------------------------EECCSCCCEEEEET-----TTTEE------EEEETTTTEEEEEETTS--C-S
T ss_pred ----------------------------cCCCCCccEEEEEc-----CCCeE------EEEECCCCEEEEEECCC--C-c
Confidence 00112345677773 34555 66666678899999874 2 2
Q ss_pred EEEEEeccccccccceEEEEEcCCCCEEEEEee--CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE
Q 048511 163 MNVVTVGELSHSALGFYGGHWSPDGRSILAHGY--GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV 240 (351)
Q Consensus 163 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~ 240 (351)
...+. .........++++|.+..|+.+.. .+.|..+++..... .......-.....|+++|++..|+.+
T Consensus 113 ~~~l~----~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-----~~~~~~~l~~Pnglavd~~~~~lY~a 183 (318)
T 3sov_A 113 RKVLF----WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-----FIIINSEIYWPNGLTLDYEEQKLYWA 183 (318)
T ss_dssp CEEEE----CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-----EEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred EEEEE----eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-----EEEEECCCCCccEEEEeccCCEEEEE
Confidence 22221 122335688999997666666653 57888888875421 11111223456899999976665544
Q ss_pred -eCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec-Cchhhhcee
Q 048511 241 -SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA-PLSFLKTLN 314 (351)
Q Consensus 241 -~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~-~~~~~~~~~ 314 (351)
+..+.|..+|+..... +.+.. ........+++.. +.++.+-...+.|..++. .++..+.+.
T Consensus 184 D~~~~~I~~~d~dG~~~--------~~~~~--~~~~~P~glav~~---~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 184 DAKLNFIHKSNLDGTNR--------QAVVK--GSLPHPFALTLFE---DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp ETTTTEEEEEETTSCSC--------EEEEC--SCCSCEEEEEEET---TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred ECCCCEEEEEcCCCCce--------EEEec--CCCCCceEEEEeC---CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 4578899999864331 12211 1123356777754 567777778889999997 466555544
No 262
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.24 E-value=8e-05 Score=69.39 Aligned_cols=230 Identities=12% Similarity=0.091 Sum_probs=120.5
Q ss_pred CccEEEEeeCCC-----------cEEEEecCCCcccceeeccc--ccceeeeEeeecCCeEEecCCc-eeEEEEEe----
Q 048511 48 ISILLVSSSQDK-----------VIRIWKLALRGSSANTQSTY--RKEVISLASYIEGPVLVAGSSS-YQVSVESL---- 109 (351)
Q Consensus 48 ~~~~l~t~~~dg-----------~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~---- 109 (351)
++++++.|+.+. .+.+||..+........... .......++..++++++.|+.. ..+.++..
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~ 276 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS 276 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCc
Confidence 788888887643 58899998876543322211 1122235667889999988743 23333321
Q ss_pred ---ccc-ccc-ceEEEEecCCCCCCCCCcccCCCceeEEee-cC-----CeEEEEeccCCCcceEEEEEe--cccccccc
Q 048511 110 ---LIG-HED-WVYSVQWEPPSTAPSDGVSCQQPSSILSAS-MD-----KTMMIWQPEKTTGIWMNVVTV--GELSHSAL 176 (351)
Q Consensus 110 ---~~~-h~~-~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~-~d-----~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~ 176 (351)
+.. +.. .-.++.+. +++++ ++.|+ .+ ..+.+||..+ ..+...-.. ..+.....
T Consensus 277 W~~~~~~~~~R~~~s~~~~------~dg~i------yv~GG~~~~~~~~~~~e~yd~~t--~~W~~~~~~~~~p~~~~~~ 342 (656)
T 1k3i_A 277 WIPGPDMQVARGYQSSATM------SDGRV------FTIGGSWSGGVFEKNGEVYSPSS--KTWTSLPNAKVNPMLTADK 342 (656)
T ss_dssp EEECCCCSSCCSSCEEEEC------TTSCE------EEECCCCCSSSCCCCEEEEETTT--TEEEEETTSCSGGGCCCCT
T ss_pred eeECCCCCccccccceEEe------cCCeE------EEEeCcccCCcccccceEeCCCC--CcceeCCCccccccccccc
Confidence 110 111 11233444 47777 88888 34 5699999987 555432100 00000000
Q ss_pred ceEEEEEcCCCCEEEEEeeC---------CeEEEEEcccCcccCccccccccc------ccccEEEEEeec-CCCEEEEE
Q 048511 177 GFYGGHWSPDGRSILAHGYG---------GAFHLWRNVGVDIDNWQPQKVPSG------HFAAVMDISWSR-SSDYLLSV 240 (351)
Q Consensus 177 ~i~~i~~~~~~~~l~~~~~d---------g~i~~~d~~~~~~~~~~~~~~~~~------~~~~v~~v~~sp-~~~~l~s~ 240 (351)
...+..++..++.++.+ ..+..||..+..- +........ ....-.++.|.. ++++++.|
T Consensus 343 ---~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w--~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~G 417 (656)
T 1k3i_A 343 ---QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD--VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFG 417 (656)
T ss_dssp ---TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE--EEEEEECEETTEECCCCBTCEEEEEETTTTEEEEEC
T ss_pred ---cceeecCCceEEEECCCCcEEEecCccceeeeecCCcce--eecCCccccccccCCCCCCCceEeccCCCCeEEEEe
Confidence 01223445555555444 3567888766431 011100000 011223444543 67788888
Q ss_pred eCCC-----------cEEEEcCCCccccccCccceEEec--cccccccceeEEEEeeeCCCcEEEEecCC----------
Q 048511 241 SHDQ-----------TTRVFAPWKNVASLMGENSWHEVA--RPQVHGHDINCVTIIQGKGNHRFVSGADE---------- 297 (351)
Q Consensus 241 ~~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---------- 297 (351)
+.++ .|.+||..+.. |..+. .+. ....-.+++..+ ++.+++.|+.+
T Consensus 418 G~~~~~~~~~~~~~~~v~~yd~~~~~--------W~~~~~~~mp-~~R~~~~~~~l~--~g~i~v~GG~~~~~~~~~~~~ 486 (656)
T 1k3i_A 418 GSPDYQDSDATTNAHIITLGEPGTSP--------NTVFASNGLY-FARTFHTSVVLP--DGSTFITGGQRRGIPFEDSTP 486 (656)
T ss_dssp CBSSSSSSBCCCCEEEEECCSTTSCC--------EEEECTTCCS-SCCBSCEEEECT--TSCEEEECCBSBCCTTCCCSB
T ss_pred CCCCCCCCCcCCcceEEEcCCCCCCC--------eeEEccCCCC-CCcccCCeEECC--CCCEEEECCcccCcCcCCCCc
Confidence 7542 67788876553 55543 221 112223445666 78999999854
Q ss_pred -CeEEEEecCc
Q 048511 298 -KVARVFEAPL 307 (351)
Q Consensus 298 -g~v~vw~~~~ 307 (351)
..+.+||...
T Consensus 487 ~~~v~~ydp~t 497 (656)
T 1k3i_A 487 VFTPEIYVPEQ 497 (656)
T ss_dssp CCCCEEEEGGG
T ss_pred ccceEEEcCCC
Confidence 4688999764
No 263
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.24 E-value=0.00049 Score=62.81 Aligned_cols=107 Identities=8% Similarity=0.023 Sum_probs=66.9
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEecc-cc-------ccccce--------------------------EEEEEcCC
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGE-LS-------HSALGF--------------------------YGGHWSPD 186 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~-------~~~~~i--------------------------~~i~~~~~ 186 (351)
++.++.+|.+.++|.++ ++.+-...+.. .. ....++ ..++++|+
T Consensus 319 v~~~~~~G~l~~lD~~t--G~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~ 396 (571)
T 2ad6_A 319 LSHIDRNGILYTLNREN--GNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE 396 (571)
T ss_dssp EEEECTTSEEEEEETTT--CCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred EEEeCCCcEEEEEECCC--CCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCC
Confidence 67788899999999998 66655554321 00 000011 24678888
Q ss_pred CCEEEEEee-------------------------------------CCeEEEEEcccCcccCcccccccccccccEEEEE
Q 048511 187 GRSILAHGY-------------------------------------GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDIS 229 (351)
Q Consensus 187 ~~~l~~~~~-------------------------------------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~ 229 (351)
...+++... ++.|..||+.+++. +-++. +...+.+..
T Consensus 397 ~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~-----~W~~~-~~~~~~~~~ 470 (571)
T 2ad6_A 397 SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA-----KWTKW-EKFAAWGGT 470 (571)
T ss_dssp TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE-----EEEEE-ESSCCCSBC
T ss_pred CCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE-----EEEec-CCCCcccee
Confidence 777776543 46888888887742 22222 112222223
Q ss_pred eecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511 230 WSRSSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 230 ~sp~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
+...+..++.++.|+.|+.||.++++
T Consensus 471 ~~t~gg~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 471 LYTKGGLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCC
T ss_pred EEECCCEEEEEcCCCeEEEEECCCCC
Confidence 33345677778999999999999987
No 264
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.23 E-value=0.00035 Score=65.15 Aligned_cols=54 Identities=11% Similarity=0.049 Sum_probs=37.3
Q ss_pred CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511 196 GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 196 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
+|.|..||+.+++. +-+... ........+...+.+++.++.|+.++.||.++++
T Consensus 437 ~g~l~A~D~~tG~~-----~W~~~~-~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~ 490 (668)
T 1kv9_A 437 SGALLAWDPVKQKA-----AWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE 490 (668)
T ss_dssp EEEEEEEETTTTEE-----EEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cceEEEEeCCCCcE-----EEEccC-CCCCcCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence 37899999988753 222221 1223333445567888899999999999999887
No 265
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.22 E-value=0.0016 Score=54.32 Aligned_cols=213 Identities=12% Similarity=0.054 Sum_probs=120.8
Q ss_pred EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511 20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS 99 (351)
Q Consensus 20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (351)
+.+..+... .....++|. ++++++++-..++.|..||.... ....
T Consensus 23 ~~~~~~p~~-~~pegia~~--------~~g~lyv~d~~~~~I~~~d~~g~-~~~~------------------------- 67 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASA--------PDGTIFVTNHEVGEIVSITPDGN-QQIH------------------------- 67 (306)
T ss_dssp EEEEEECTT-CCEEEEEEC--------TTSCEEEEETTTTEEEEECTTCC-EEEE-------------------------
T ss_pred eEeEeCCCC-CCcceEEEC--------CCCCEEEEeCCCCeEEEECCCCc-eEEE-------------------------
Confidence 445555432 457789999 77887777667888888887542 1100
Q ss_pred CceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCC--eEEEEeccCCCcceEEEEEeccccccccc
Q 048511 100 SSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDK--TMMIWQPEKTTGIWMNVVTVGELSHSALG 177 (351)
Q Consensus 100 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 177 (351)
+. ....+..+++. +++++ +++..... .|..+|..+ +......... ....
T Consensus 68 -------~~----~~~~p~gia~~------~dG~l------~vad~~~~~~~v~~~d~~~--g~~~~~~~~~----~~~~ 118 (306)
T 2p4o_A 68 -------AT----VEGKVSGLAFT------SNGDL------VATGWNADSIPVVSLVKSD--GTVETLLTLP----DAIF 118 (306)
T ss_dssp -------EE----CSSEEEEEEEC------TTSCE------EEEEECTTSCEEEEEECTT--SCEEEEEECT----TCSC
T ss_pred -------Ee----CCCCceeEEEc------CCCcE------EEEeccCCcceEEEEcCCC--CeEEEEEeCC----Cccc
Confidence 00 12347788998 67776 66554332 466667665 5443222211 1122
Q ss_pred eEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCc---cccc--ccccccccEEEEEeecCCCEEEEE-eCCCcEEEEcC
Q 048511 178 FYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNW---QPQK--VPSGHFAAVMDISWSRSSDYLLSV-SHDQTTRVFAP 251 (351)
Q Consensus 178 i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~---~~~~--~~~~~~~~v~~v~~sp~~~~l~s~-~~dg~i~vwd~ 251 (351)
...++..+++..+++-..++.|+.+|..++....+ .... .....-.....+ +|+++.|+.+ ...+.|.+|++
T Consensus 119 ~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~ 196 (306)
T 2p4o_A 119 LNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPV 196 (306)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEB
T ss_pred cCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEe
Confidence 34455555554444444578899998764311000 0000 111111234556 8888766544 55789999998
Q ss_pred CC-ccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchh
Q 048511 252 WK-NVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSF 309 (351)
Q Consensus 252 ~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~ 309 (351)
.. +.. .....+... .....+++.+ +|+++++....+.|.+++..++.
T Consensus 197 ~~~g~~-----~~~~~~~~~----~~P~gi~vd~--dG~l~va~~~~~~V~~~~~~G~~ 244 (306)
T 2p4o_A 197 DSTDKP-----GEPEIFVEQ----TNIDDFAFDV--EGNLYGATHIYNSVVRIAPDRST 244 (306)
T ss_dssp CTTSCB-----CCCEEEEES----CCCSSEEEBT--TCCEEEECBTTCCEEEECTTCCE
T ss_pred CCCCCC-----CccEEEecc----CCCCCeEECC--CCCEEEEeCCCCeEEEECCCCCE
Confidence 64 221 011111111 2357789988 88888888888899999987654
No 266
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.22 E-value=0.0021 Score=56.47 Aligned_cols=238 Identities=8% Similarity=0.003 Sum_probs=130.5
Q ss_pred ceeEEEeeCCcccCCCC-CccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCC-ce----eE
Q 048511 31 WIRSLDFSLPVCTSGEA-ISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSS-SY----QV 104 (351)
Q Consensus 31 ~V~~l~~~~~~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~----~~ 104 (351)
....|+++ + ++..|+.+...+.|+.+|+.......... .......++++++++.|.+++. .. .+
T Consensus 138 ~P~~lavd--------p~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~--~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v 207 (430)
T 3tc9_A 138 GAVWLSFD--------PKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS--GLSKVRTICWTHEADSMIITNDQNNNDRPNN 207 (430)
T ss_dssp CCCEEEEE--------TTEEEEEEEEEBTEEEEEEETTTTEEEEEEC--CCSCEEEEEECTTSSEEEEEECCSCTTSEEE
T ss_pred CCCEEEEC--------CCCCCeEEEEeCCCcEEEEECCCCEEEEEec--CCCCcceEEEeCCCCEEEEEeCCCCcccceE
Confidence 34678888 6 45566666555788889987654322221 3346778999999995555442 11 11
Q ss_pred EEEEeccc---------cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc
Q 048511 105 SVESLLIG---------HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA 175 (351)
Q Consensus 105 ~~~~~~~~---------h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 175 (351)
.... ..+ .......+++.| .++.+ +++-..++.|..++... +........ ...
T Consensus 208 ~~~~-~~g~~~~~~~l~~~~~p~giavdp-----~~g~l------yv~d~~~~~V~~~~~~~--~~~~~~~~~----~~~ 269 (430)
T 3tc9_A 208 YILT-RESGFKVITELTKGQNCNGAETHP-----INGEL------YFNSWNAGQVFRYDFTT--QETTPLFTI----QDS 269 (430)
T ss_dssp EEEE-GGGTSCSEEEEEECSSCCCEEECT-----TTCCE------EEEETTTTEEEEEETTT--TEEEEEEEC----SSS
T ss_pred EEEe-CCCceeeeeeeccCCCceEEEEeC-----CCCEE------EEEECCCCEEEEEECCC--CcEEEEEEc----CCC
Confidence 1111 111 012235566773 25665 66666778899999876 433222221 112
Q ss_pred cceEEEEEcCCCCEEEEEe-eCCeEEEEEcccCcccCccccccccc---------------ccccEE-EEEee-------
Q 048511 176 LGFYGGHWSPDGRSILAHG-YGGAFHLWRNVGVDIDNWQPQKVPSG---------------HFAAVM-DISWS------- 231 (351)
Q Consensus 176 ~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~---------------~~~~v~-~v~~s------- 231 (351)
.....++|+|++++|+.+. ..+.|..++....... +.....+.+ .-.... .++..
T Consensus 270 ~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~-~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~ 348 (430)
T 3tc9_A 270 GWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKR-LTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGS 348 (430)
T ss_dssp SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE-ECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTS
T ss_pred CcceeEEEcCCCCEEEEEECCCCEEEEEeCCccccc-ccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEcccccccc
Confidence 3467899999999665554 5689999887642100 000111110 011223 45543
Q ss_pred -cCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecc----ccc----------cccceeEEEEeeeCCCcEEEEecC
Q 048511 232 -RSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVAR----PQV----------HGHDINCVTIIQGKGNHRFVSGAD 296 (351)
Q Consensus 232 -p~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~~----------~~~~i~~~~~~~~~~~~~l~s~~~ 296 (351)
+++.++++-.....|+.++. ++.. .. .... ..+ .-.....+++.+ .++.++++-..
T Consensus 349 D~~g~lyvaD~~n~~I~~i~~-~G~v-----~~--~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~-~~g~lyVaD~~ 419 (430)
T 3tc9_A 349 SDEYDFYFCDRENHCIRILTP-QGRV-----TT--FAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDE-ERECFFIGDRE 419 (430)
T ss_dssp SCCEEEEEEEGGGTEEEEECT-TSEE-----EE--EEECCTTSSSSCBCEETTTTCBCSSEEEEEEET-TTTEEEEEEGG
T ss_pred CCCCeEEEEECCCcEEEEECC-CCcE-----EE--EEeCCCCCCCcccCCCchhhcEeCCCcEEEEEC-CCCEEEEEECC
Confidence 33555565556778888884 3321 01 1110 001 112478899987 23667777667
Q ss_pred CCeEEEEecC
Q 048511 297 EKVARVFEAP 306 (351)
Q Consensus 297 dg~v~vw~~~ 306 (351)
...|+.++++
T Consensus 420 n~rIr~i~~e 429 (430)
T 3tc9_A 420 NRRIRKIGYE 429 (430)
T ss_dssp GTEEEEEEEC
T ss_pred CCeEEEEccC
Confidence 7888887754
No 267
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.21 E-value=0.0011 Score=56.45 Aligned_cols=164 Identities=10% Similarity=-0.071 Sum_probs=99.3
Q ss_pred cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEE-EEE
Q 048511 115 DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSI-LAH 193 (351)
Q Consensus 115 ~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~ 193 (351)
..+..++|.+ .++.+ +++-...+.|..+++.. ......+. ........+++++.+..| ++-
T Consensus 73 ~~~~~l~~d~-----~~~~l------y~~D~~~~~I~r~~~~g--~~~~~~~~-----~~~~~p~glavd~~~g~ly~~d 134 (349)
T 3v64_C 73 ENAIALDFHH-----RRELV------FWSDVTLDRILRANLNG--SNVEEVVS-----TGLESPGGLAVDWVHDKLYWTD 134 (349)
T ss_dssp SCEEEEEEET-----TTTEE------EEEETTTTEEEEEETTS--CSCEEEEC-----SSCSCCCEEEEETTTTEEEEEE
T ss_pred CceEEEEEec-----cccEE------EEEeccCCceEEEecCC--CCceEEEe-----CCCCCccEEEEecCCCeEEEEc
Confidence 3478899985 44555 66656678899998876 32222111 112234678998755545 454
Q ss_pred eeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEE-EEeCC-CcEEEEcCCCccccccCccceEEecccc
Q 048511 194 GYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLL-SVSHD-QTTRVFAPWKNVASLMGENSWHEVARPQ 271 (351)
Q Consensus 194 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~-s~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~ 271 (351)
...+.|.++++..... ...+.........+++.|.+..|+ +-... +.|..+++..... ..+..
T Consensus 135 ~~~~~I~~~~~dG~~~-----~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~--------~~~~~-- 199 (349)
T 3v64_C 135 SGTSRIEVANLDGAHR-----KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR--------RIIAD-- 199 (349)
T ss_dssp TTTTEEEEEETTSCSC-----EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--------EESCC--
T ss_pred CCCCeEEEEcCCCCce-----EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc--------EEEEE--
Confidence 5568999999876421 111222334578999999665554 44444 7788888764331 11111
Q ss_pred ccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhc
Q 048511 272 VHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKT 312 (351)
Q Consensus 272 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~ 312 (351)
......+.+++++ .++.++++-...+.|..+++.+...+.
T Consensus 200 ~~~~~PnGla~d~-~~~~lY~aD~~~~~I~~~~~dG~~~~~ 239 (349)
T 3v64_C 200 THLFWPNGLTIDY-AGRRMYWVDAKHHVIERANLDGSHRKA 239 (349)
T ss_dssp SSCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CCCCCcceEEEeC-CCCEEEEEECCCCEEEEEeCCCCceEE
Confidence 1123468899997 245556666677899999988654443
No 268
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.20 E-value=0.00019 Score=64.59 Aligned_cols=147 Identities=10% Similarity=-0.045 Sum_probs=91.1
Q ss_pred cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCC---------------e------------
Q 048511 146 MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGG---------------A------------ 198 (351)
Q Consensus 146 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg---------------~------------ 198 (351)
.++.+.+.|..+ .+...++.+.. ....++++|+|+++++.+.+. .
T Consensus 173 ~~~~vtvID~~t--~~v~~qI~Vgg------~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~ 244 (595)
T 1fwx_A 173 YVNVFTAVDADK--WEVAWQVLVSG------NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA 244 (595)
T ss_dssp EEEEEEEEETTT--TEEEEEEEESS------CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred cCceEEEEECCC--CeEEEEEEeCC------CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEe
Confidence 356899999998 67776666421 234577899999999888553 2
Q ss_pred -----------EEEEEcccCcccCccc-ccccccccccEEEEEeecCCCEEEEEe-CCCcEEEEcCCCccccccC--ccc
Q 048511 199 -----------FHLWRNVGVDIDNWQP-QKVPSGHFAAVMDISWSRSSDYLLSVS-HDQTTRVFAPWKNVASLMG--ENS 263 (351)
Q Consensus 199 -----------i~~~d~~~~~~~~~~~-~~~~~~~~~~v~~v~~sp~~~~l~s~~-~dg~i~vwd~~~~~~~~~~--~~~ 263 (351)
|.+.|..+.+. .. +..+. -.....++.++|||+++++++ .+.+|.++|+.+.+..... ...
T Consensus 245 v~~Gk~~~i~~V~VID~~~~~~---~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~ 320 (595)
T 1fwx_A 245 IAAGDYQELNGVKVVDGRKEAS---SLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR 320 (595)
T ss_dssp HHHTCSEEETTEEEEECSGGGC---CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGG
T ss_pred ccCCCeeEECcEEEEeCcccCC---ceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcc
Confidence 44444443100 11 11221 122456789999999876665 5789999999855210000 000
Q ss_pred eEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511 264 WHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 307 (351)
-..+... .-+.....++|++ +|...++.--|+.|.+|++..
T Consensus 321 ~~v~~~v-~vG~gP~h~aF~~--dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 321 SAVVAEP-ELGLGPLHTAFDG--RGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp GGEEECC-BCCSCEEEEEECT--TSEEEEEETTTTEEEEEEHHH
T ss_pred cceEEEc-CCCCCcceEEECC--CCeEEEEEecCCcEEEEEhhH
Confidence 0012222 2334578999999 887677888999999999864
No 269
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.17 E-value=0.0012 Score=54.85 Aligned_cols=149 Identities=13% Similarity=0.124 Sum_probs=88.3
Q ss_pred CCeEEEEecc---CCCcceEEEEEeccccc--------cccceEEEEEcCCCCEEEEEeeC-CeEEEEEcccCcccCccc
Q 048511 147 DKTMMIWQPE---KTTGIWMNVVTVGELSH--------SALGFYGGHWSPDGRSILAHGYG-GAFHLWRNVGVDIDNWQP 214 (351)
Q Consensus 147 d~~i~iwd~~---~~~~~~~~~~~~~~~~~--------~~~~i~~i~~~~~~~~l~~~~~d-g~i~~~d~~~~~~~~~~~ 214 (351)
+..|..+|+. + ++.+....+..... .......++..++|+..++++.. +.|..++........+..
T Consensus 99 ~~~v~~~Dl~~~~t--g~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~ 176 (334)
T 2p9w_A 99 ASSFHSFNLPLSEN--SKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAW 176 (334)
T ss_dssp CCEEEEEESSCCTT--CCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEE
T ss_pred CCEEEEEcCCcCCC--CCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeee
Confidence 6789999998 6 44444343321111 12347899999999999999988 888887776542111110
Q ss_pred ccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccc--c--ccccceeEE-EEeeeCCCc
Q 048511 215 QKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARP--Q--VHGHDINCV-TIIQGKGNH 289 (351)
Q Consensus 215 ~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~--~~~~~i~~~-~~~~~~~~~ 289 (351)
...........+.|+++|++..|++....+.+..+|+.... .+ ++... - ........+ ..-. ++.
T Consensus 177 ~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv-------~~-~v~~~~~G~~~~~~~~dgilp~~~--~G~ 246 (334)
T 2p9w_A 177 ESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPY-------AW-PEPVKINGDFGTLSGTEKIVTVPV--GNE 246 (334)
T ss_dssp CCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSS-------CC-CEECEESSCCCCCTTEEEEEEEEE--TTE
T ss_pred cCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCc-------ce-eecccccCCcccccCccccccccc--CCE
Confidence 01011122346789999999988887679999999987432 11 11110 0 111123333 3323 566
Q ss_pred E-EEEecCCCeEEEEecCc
Q 048511 290 R-FVSGADEKVARVFEAPL 307 (351)
Q Consensus 290 ~-l~s~~~dg~v~vw~~~~ 307 (351)
. +++.+..+.+.+.+.++
T Consensus 247 vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 247 SVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEEEETTEEEEEECSST
T ss_pred EEEEEcCCCCEEEEECCCC
Confidence 6 56666677777777665
No 270
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.16 E-value=0.0014 Score=57.64 Aligned_cols=240 Identities=12% Similarity=0.077 Sum_probs=132.1
Q ss_pred ceeEEEeeCCcccCCCCC--ccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCc---ee-E
Q 048511 31 WIRSLDFSLPVCTSGEAI--SILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSS---YQ-V 104 (351)
Q Consensus 31 ~V~~l~~~~~~~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~-~ 104 (351)
....|+|. ++ +..|+.+...+.|+.++..++....... .......++++++|.++++.... .. +
T Consensus 140 ~P~gvavd--------~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~--~~~~P~giavd~dG~lyVad~~~~~~~~gv 209 (433)
T 4hw6_A 140 NIWRMMFD--------PNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT--NIGQCADVNFTLNGDMVVVDDQSSDTNTGI 209 (433)
T ss_dssp CCCEEEEC--------TTTTTCEEEEECBTSCEEEEETTTTEEEEECC--CCSCEEEEEECTTCCEEEEECCSCTTSEEE
T ss_pred CCceEEEc--------cccCCCEEEEEeCCCCEEEEECCCCEEEEeec--CCCCccEEEECCCCCEEEEcCCCCcccceE
Confidence 35678888 53 3445545444889999987654432221 23457889999999955543311 11 1
Q ss_pred EEEEecccc--------ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccccccc
Q 048511 105 SVESLLIGH--------EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSAL 176 (351)
Q Consensus 105 ~~~~~~~~h--------~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 176 (351)
.......+. -.....+++.| .++.+ +++-..++.|+.+|... +.....+.. . ....
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~P~giavd~-----~~G~l------yv~d~~~~~V~~~d~~~--g~~~~~~~~--~-~~~~ 273 (433)
T 4hw6_A 210 YLFTRASGFTERLSLCNARGAKTCAVHP-----QNGKI------YYTRYHHAMISSYDPAT--GTLTEEEVM--M-DTKG 273 (433)
T ss_dssp EEECGGGTTCCEEEEEECSSBCCCEECT-----TTCCE------EECBTTCSEEEEECTTT--CCEEEEEEE--C-SCCS
T ss_pred EEEECCCCeeccccccccCCCCEEEEeC-----CCCeE------EEEECCCCEEEEEECCC--CeEEEEEec--c-CCCC
Confidence 111100111 11234456662 25555 55555678899999876 444222211 1 1112
Q ss_pred ceEEEEEcCCCCEEEEEe-eCCeEEEEEcccCcccCccccccccc---------------ccccEEEEEe---------e
Q 048511 177 GFYGGHWSPDGRSILAHG-YGGAFHLWRNVGVDIDNWQPQKVPSG---------------HFAAVMDISW---------S 231 (351)
Q Consensus 177 ~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~---------------~~~~v~~v~~---------s 231 (351)
.-..++|+|++++|+.+. ..+.|+.+++...... +.....+.+ .-.....+++ .
T Consensus 274 ~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~-~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd 352 (433)
T 4hw6_A 274 SNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGK-LAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE 352 (433)
T ss_dssp SCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCC-BCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS
T ss_pred CcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcc-cCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC
Confidence 234799999999666555 5688999887532100 000011111 1124677898 6
Q ss_pred cCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccc--------------cccccceeEEEEeeeCCCcEEEEecCC
Q 048511 232 RSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARP--------------QVHGHDINCVTIIQGKGNHRFVSGADE 297 (351)
Q Consensus 232 p~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--------------~~~~~~i~~~~~~~~~~~~~l~s~~~d 297 (351)
+++.++++-.....|+.++. ++.. .. ..... ...-.....+++.| .++.++++=...
T Consensus 353 ~~g~lyvaD~~n~~I~~~~~-~G~v-----~t--~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~-~~g~lyVaD~~n 423 (433)
T 4hw6_A 353 DEYDFYFCDRDSHTVRVLTP-EGRV-----TT--YAGRGNSREWGYVDGELRSQALFNHPTSIAYDM-KRKCFYIGDCDN 423 (433)
T ss_dssp CCEEEEEEETTTTEEEEECT-TSEE-----EE--EECCCTTCSSCCBCEETTTTCBCSSEEEEEEET-TTTEEEEEEGGG
T ss_pred CCCcEEEEECCCCEEEEECC-CCCE-----EE--EEeCCCCCccccCCCccccccEeCCCcEEEEEC-CCCEEEEEeCCC
Confidence 77777777667788999985 3321 00 11100 00112367899983 267777777778
Q ss_pred CeEEEEecC
Q 048511 298 KVARVFEAP 306 (351)
Q Consensus 298 g~v~vw~~~ 306 (351)
.+|+.++++
T Consensus 424 ~rIr~i~~e 432 (433)
T 4hw6_A 424 HRVRKIAPE 432 (433)
T ss_dssp TEEEEEEEC
T ss_pred CEEEEEecC
Confidence 888888754
No 271
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.15 E-value=0.0024 Score=60.74 Aligned_cols=265 Identities=9% Similarity=-0.004 Sum_probs=141.2
Q ss_pred CCCCceEEEEEccCCCceEEEEee-------eecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccce
Q 048511 2 GGLDNKIHLYRGQRTGKFVRACEL-------KGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSAN 74 (351)
Q Consensus 2 g~~dg~i~vw~~~~~~~~~~~~~~-------~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~ 74 (351)
|+.++-|..|+... +.+...... .-....|.++... .++. |..|+.++-|..|+..+......
T Consensus 329 gt~~~Gl~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~v~~i~~d--------~~g~-lWigt~~~Gl~~~~~~~~~~~~~ 398 (781)
T 3v9f_A 329 GTWGGGINFISNAP-PTFHTWSYSPTQMNESSLSNKVVSSVCDD--------GQGK-LWIGTDGGGINVFENGKRVAIYN 398 (781)
T ss_dssp EEBSSCEEEECSSC-CSCEEEC----CCCSSCCSSSCEEEEEEC--------TTSC-EEEEEBSSCEEEEETTEEEEECC
T ss_pred EecCCeEEEeCCCC-CcceeeccCccccccCCCCCcceEEEEEc--------CCCC-EEEEeCCCcEEEEECCCCeEEEc
Confidence 34455677777665 443332111 0123568888887 5565 44566556688888765432211
Q ss_pred e--ecccccceeeeEeeecCCeEEecCCceeEEE------EEecc---ccccceEEEEecCCCCCCCCCcccCCCceeEE
Q 048511 75 T--QSTYRKEVISLASYIEGPVLVAGSSSYQVSV------ESLLI---GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILS 143 (351)
Q Consensus 75 ~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~---~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s 143 (351)
. .......+.++....++.+.+.....+-... ...+. .....|.++... +++. |..
T Consensus 399 ~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d------~~g~-------lwi 465 (781)
T 3v9f_A 399 KENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYED------KNKK-------IWI 465 (781)
T ss_dssp -----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEEC------TTSE-------EEE
T ss_pred cCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEEC------CCCC-------EEE
Confidence 1 0112345666766667776664332222211 11111 123568888877 5665 444
Q ss_pred eecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccc
Q 048511 144 ASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFA 223 (351)
Q Consensus 144 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 223 (351)
|+. +-|..||..+ +.................|.++...+++.+. .|+.++-|..||..+.+...+..... ....
T Consensus 466 gt~-~Gl~~~~~~~--~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~--l~~~ 539 (781)
T 3v9f_A 466 GTH-AGVFVIDLAS--KKVIHHYDTSNSQLLENFVRSIAQDSEGRFW-IGTFGGGVGIYTPDMQLVRKFNQYEG--FCSN 539 (781)
T ss_dssp EET-TEEEEEESSS--SSCCEEECTTTSSCSCSCEEEEEECTTCCEE-EEESSSCEEEECTTCCEEEEECTTTT--CSCS
T ss_pred EEC-CceEEEeCCC--CeEEecccCcccccccceeEEEEEcCCCCEE-EEEcCCCEEEEeCCCCeEEEccCCCC--CCCC
Confidence 555 5588899876 4332221111001123578999998888754 45554447778876653211111011 1245
Q ss_pred cEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccc-ccccceeEEEEeeeCCCcEEEEecCCCeEEE
Q 048511 224 AVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQ-VHGHDINCVTIIQGKGNHRFVSGADEKVARV 302 (351)
Q Consensus 224 ~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~v 302 (351)
.|.++...++|.+.++. .+|.|..||..+.. +....... .....|.++...+ ++.+.+++ .+| |..
T Consensus 540 ~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~--------~~~~~~~~gl~~~~i~~i~~d~--~g~lW~~t-~~G-l~~ 606 (781)
T 3v9f_A 540 TINQIYRSSKGQMWLAT-GEGLVCFPSARNFD--------YQVFQRKEGLPNTHIRAISEDK--NGNIWAST-NTG-ISC 606 (781)
T ss_dssp CEEEEEECTTSCEEEEE-TTEEEEESCTTTCC--------CEEECGGGTCSCCCCCEEEECS--SSCEEEEC-SSC-EEE
T ss_pred eeEEEEECCCCCEEEEE-CCCceEEECCCCCc--------EEEccccCCCCCceEEEEEECC--CCCEEEEc-CCc-eEE
Confidence 78999988888866544 46665889987654 12222211 1223477777776 66655554 555 455
Q ss_pred EecCch
Q 048511 303 FEAPLS 308 (351)
Q Consensus 303 w~~~~~ 308 (351)
|+....
T Consensus 607 ~~~~~~ 612 (781)
T 3v9f_A 607 YITSKK 612 (781)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 665533
No 272
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.14 E-value=0.0026 Score=53.65 Aligned_cols=232 Identities=9% Similarity=0.084 Sum_probs=123.3
Q ss_pred CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc--cccceeeeEeeecCCeEEecCCceeEE-
Q 048511 29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST--YRKEVISLASYIEGPVLVAGSSSYQVS- 105 (351)
Q Consensus 29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~- 105 (351)
...+.+|.|. + +..++ ++.++.|.. ..+.++.-...... .......+.+..++..++++......+
T Consensus 79 ~~~~~~i~~~--------~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S 147 (327)
T 2xbg_A 79 DYRFNSVSFQ--------G-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRT 147 (327)
T ss_dssp CCEEEEEEEE--------T-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEE
T ss_pred CccEEEEEec--------C-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEE
Confidence 3468888888 5 33444 455664433 22223322222111 122355666666666666553221111
Q ss_pred -----EEEe-ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceE
Q 048511 106 -----VESL-LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFY 179 (351)
Q Consensus 106 -----~~~~-~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~ 179 (351)
.|.. .......+..+.+. +++.+ ++.+...+..+-+|-.. ..+.. +. ......+.
T Consensus 148 ~DgG~tW~~~~~~~~~~~~~~~~~------~~~~~------~~~g~~G~~~~S~d~gG--~tW~~-~~----~~~~~~~~ 208 (327)
T 2xbg_A 148 KDSGKNWQALVQEAIGVMRNLNRS------PSGEY------VAVSSRGSFYSTWEPGQ--TAWEP-HN----RTTSRRLH 208 (327)
T ss_dssp SSTTSSEEEEECSCCCCEEEEEEC------TTSCE------EEEETTSSEEEEECTTC--SSCEE-EE----CCSSSCEE
T ss_pred cCCCCCCEEeecCCCcceEEEEEc------CCCcE------EEEECCCcEEEEeCCCC--CceeE-CC----CCCCCccc
Confidence 1221 22344568889998 56666 66554444333344311 22222 11 12345688
Q ss_pred EEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccc-ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccc
Q 048511 180 GGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP-SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASL 258 (351)
Q Consensus 180 ~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~ 258 (351)
.+.+.+++..+ .++.+|.+++.+...+.. |..+..- ..+...+.++.+.+++.+++++ .++.| .+....+.
T Consensus 209 ~~~~~~~g~~~-~~~~~G~~~~s~~D~G~t--W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~--- 280 (327)
T 2xbg_A 209 NMGFTPDGRLW-MIVNGGKIAFSDPDNSEN--WGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQ--- 280 (327)
T ss_dssp EEEECTTSCEE-EEETTTEEEEEETTEEEE--ECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTS---
T ss_pred eeEECCCCCEE-EEeCCceEEEecCCCCCe--eEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCc---
Confidence 89999988755 455678877764322211 2222211 1122358889999888776665 46766 33444443
Q ss_pred cCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511 259 MGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA 305 (351)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~ 305 (351)
.|..+.........+.++.|.+ ++ .+++++.+|.|.-++-
T Consensus 281 ----tW~~~~~~~~~~~~~~~v~~~~--~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 281 ----TWQQDVDVKKVPSNFYKILFFS--PD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp ----SCEECGGGTTSSSCCCEEEEEE--TT-EEEEECSTTEEEEECC
T ss_pred ----ccEEcCccCCCCCCeEEEEEEC--CC-ceEEEcCCceEEEEcC
Confidence 7777654333335578898876 45 4666677888766653
No 273
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.12 E-value=0.0021 Score=51.80 Aligned_cols=218 Identities=12% Similarity=0.097 Sum_probs=125.9
Q ss_pred eeeecCCceeEEEeeCCcccCCCCCcc-EEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCce
Q 048511 24 ELKGHTDWIRSLDFSLPVCTSGEAISI-LLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSY 102 (351)
Q Consensus 24 ~~~~h~~~V~~l~~~~~~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 102 (351)
.+.+-.+.+..|+|. ++++ ++++...++.|...|.. ++....+.
T Consensus 21 ~l~g~~~~lSGla~~--------~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-------------------------- 65 (255)
T 3qqz_A 21 EIAGITNNISSLTWS--------AQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-------------------------- 65 (255)
T ss_dssp ECTTCCSCEEEEEEE--------TTTTEEEEEEETTEEEEEEETT-CCEEEEEE--------------------------
T ss_pred ECCCcccCcceeEEe--------CCCCEEEEEECCCCeEEEEeCC-CCEEEEEe--------------------------
Confidence 455666789999999 5555 44556677788877876 43322221
Q ss_pred eEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc-ceEEEEEecc-ccccccceEE
Q 048511 103 QVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG-IWMNVVTVGE-LSHSALGFYG 180 (351)
Q Consensus 103 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~-~~~~~~~i~~ 180 (351)
+.+ ......|++. .++.+ +++.-.++.+.++++..... ..+....+.. ..........
T Consensus 66 -------l~g-~~D~EGIa~~------~~g~~------~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EG 125 (255)
T 3qqz_A 66 -------LDF-VKDLETIEYI------GDNQF------VISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEG 125 (255)
T ss_dssp -------CSS-CSSEEEEEEC------STTEE------EEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEE
T ss_pred -------cCC-CCChHHeEEe------CCCEE------EEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcce
Confidence 122 1346677887 66666 66665678888888876321 1222332211 1133456789
Q ss_pred EEEcCCCCEEEEEeeCCeEEEEEcccCcc-cCcccccc--c--ccccccEEEEEeecCC-CEEEEEeCCCcEEEEcCCCc
Q 048511 181 GHWSPDGRSILAHGYGGAFHLWRNVGVDI-DNWQPQKV--P--SGHFAAVMDISWSRSS-DYLLSVSHDQTTRVFAPWKN 254 (351)
Q Consensus 181 i~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~--~--~~~~~~v~~v~~sp~~-~~l~s~~~dg~i~vwd~~~~ 254 (351)
++|+|.++.|+++.......+|.+..... ........ + ..+...+.+++++|.. ++++.....+.+.++|....
T Consensus 126 LA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~ 205 (255)
T 3qqz_A 126 LAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE 205 (255)
T ss_dssp EEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC
T ss_pred EEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC
Confidence 99999998888877765556666542100 00011100 0 0123357889999965 45566666788999997644
Q ss_pred cccccCccceEEec-cccc---cccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511 255 VASLMGENSWHEVA-RPQV---HGHDINCVTIIQGKGNHRFVSGADEKVARVFEA 305 (351)
Q Consensus 255 ~~~~~~~~~~~~~~-~~~~---~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~ 305 (351)
.. ....+. ...+ .-...-.|+|.+ +|.++++ ++-..+++|..
T Consensus 206 ~~------~~~~L~~g~~~l~~~~~qpEGia~d~--~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 206 VI------GEMSLTKGSRGLSHNIKQAEGVAMDA--SGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EE------EEEECSTTGGGCSSCCCSEEEEEECT--TCCEEEE-ETTTEEEEEEC
T ss_pred EE------EEEEcCCccCCcccccCCCCeeEECC--CCCEEEE-cCCceEEEEEe
Confidence 21 111111 1100 012467899999 8876666 56667766653
No 274
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.10 E-value=0.0036 Score=57.30 Aligned_cols=60 Identities=8% Similarity=0.086 Sum_probs=38.3
Q ss_pred CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceee
Q 048511 243 DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNH 315 (351)
Q Consensus 243 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~ 315 (351)
+|.|.-||+.+++ ..|+.-... +...-.... .+.+++.++.|+.++.||.. |+.+-.++-
T Consensus 452 ~G~l~A~D~~tG~------~~W~~~~~~-----~~~~g~~~t--agg~vf~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 452 LGQIKAYNAITGD------YKWEKMERF-----AVWGGTMAT--AGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp CEEEEEECTTTCC------EEEEEEESS-----CCCSBCEEE--TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cCeEEEEECCCCC------EEeEecCCC-----CccCcceEe--cCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence 4678888888876 345432211 121111222 46677779999999999976 887776653
No 275
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.10 E-value=0.0029 Score=52.69 Aligned_cols=137 Identities=7% Similarity=-0.077 Sum_probs=74.0
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEe-c--cccccccceEEEEEcCCCCEEEEEe-eCCeEEEEEccc-CcccCcccc
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTV-G--ELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNVG-VDIDNWQPQ 215 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~--~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~-~~~~~~~~~ 215 (351)
+++-..++.|.++|.....+........ . .....-.....+ +++++.|+.+. ..+.|..|++.. +.. ...
T Consensus 131 ~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~---~~~ 205 (306)
T 2p4o_A 131 LTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP---GEP 205 (306)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB---CCC
T ss_pred EEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC---Ccc
Confidence 5554457888888876411111100000 0 000111123445 78887666655 568999999875 221 111
Q ss_pred cccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEe---eeCCCcEEE
Q 048511 216 KVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTII---QGKGNHRFV 292 (351)
Q Consensus 216 ~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~l~ 292 (351)
..+. .......+++.++|+++++....+.|.++|.. ++. ..+..........++++|. + ++..|.
T Consensus 206 ~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~--------~~~~~~~~~~~~p~~~a~~g~~~--d~~~Ly 273 (306)
T 2p4o_A 206 EIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RST--------TIIAQAEQGVIGSTAVAFGQTEG--DCTAIY 273 (306)
T ss_dssp EEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCE--------EEEECGGGTCTTEEEEEECCSTT--TTTEEE
T ss_pred EEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCE--------EEEeecccccCCceEEEEecccC--CCCEEE
Confidence 1111 11345678999999887777778899999974 331 1222222223457899997 6 554444
Q ss_pred Ee
Q 048511 293 SG 294 (351)
Q Consensus 293 s~ 294 (351)
..
T Consensus 274 Vt 275 (306)
T 2p4o_A 274 VV 275 (306)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 276
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.06 E-value=0.0031 Score=57.70 Aligned_cols=62 Identities=11% Similarity=0.166 Sum_probs=41.2
Q ss_pred CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511 243 DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT 317 (351)
Q Consensus 243 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~ 317 (351)
+|.|.-||+.+++ ..|+.-... ++..-.... .+.+++.|+.|+.++.||.+ |+.+-.++.-.
T Consensus 465 ~G~l~A~D~~tG~------~~W~~~~~~-----~~~~g~~~t--agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~ 527 (582)
T 1flg_A 465 VGSLRAMDPVSGK------VVWEHKEHL-----PLWAGVLAT--AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS 527 (582)
T ss_dssp SEEEEEECTTTCC------EEEEEEESS-----CCCSCCEEE--TTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred cceEEEEECCCCC------EEEEecCCC-----CCcccceEe--CCCEEEEECCCCcEEEEECCCCCEEEEecCCC
Confidence 5789999998887 345433211 222222222 36678889999999999986 88887776543
No 277
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.05 E-value=0.0016 Score=59.65 Aligned_cols=54 Identities=11% Similarity=-0.016 Sum_probs=32.4
Q ss_pred CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511 196 GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 196 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
.|.|..||+.+++. +-+.. +..+...-.+...+.+++.++.|+.++.||.++++
T Consensus 452 ~G~l~A~D~~tG~~-----~W~~~-~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~ 505 (599)
T 1w6s_A 452 LGQIKAYNAITGDY-----KWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGD 505 (599)
T ss_dssp CEEEEEECTTTCCE-----EEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cCeEEEEECCCCCE-----EeEec-CCCCccCcceEecCCEEEEECCCCeEEEEECCCCC
Confidence 36677777777642 11111 11111111123356677789999999999999998
No 278
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.04 E-value=0.00066 Score=64.24 Aligned_cols=153 Identities=13% Similarity=0.142 Sum_probs=80.1
Q ss_pred EEEecCCCCCCCCCcccCCCceeEEeecC-----CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEE
Q 048511 119 SVQWEPPSTAPSDGVSCQQPSSILSASMD-----KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAH 193 (351)
Q Consensus 119 ~l~~~p~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 193 (351)
.+.|+ +|++. |+....| ..|.++++.+........+. . ........+.|+||+++|+..
T Consensus 225 ~~~Ws------pDg~~------l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~--~--~~~~~~~~~~~SpDg~~l~~~ 288 (751)
T 2xe4_A 225 EIVWG------PDHTS------LFYVTKDETLRENKVWRHVMGKLQSEDVCLYE--E--HNPLFSAFMYKAADTNTLCIG 288 (751)
T ss_dssp CCEEC------SSTTE------EEEEEECTTCCEEEEEEEETTSCGGGCEEEEE--C--CCTTCEEEEEECTTSSEEEEE
T ss_pred eEEEe------cCCCE------EEEEEECCCCCCCEEEEEECCCCchhcEEEEe--c--CCCceEEEEEECCCCCEEEEE
Confidence 56788 67766 6665554 25777777652211111221 0 112345678999999988876
Q ss_pred ee---CCeEEEEEcccCcccCccc--ccccccccccEEEEEeecCCCEEEEEeCC----CcEEEEcCCCccccccCccce
Q 048511 194 GY---GGAFHLWRNVGVDIDNWQP--QKVPSGHFAAVMDISWSRSSDYLLSVSHD----QTTRVFAPWKNVASLMGENSW 264 (351)
Q Consensus 194 ~~---dg~i~~~d~~~~~~~~~~~--~~~~~~~~~~v~~v~~sp~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~ 264 (351)
.. ...|+++|+.++.. .. ............++.|+.++.+++....+ ..|..+|+.+.. .|
T Consensus 289 ~~~~~~~~l~~~d~~~~~~---~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~-------~~ 358 (751)
T 2xe4_A 289 SQSPETAEVHLLDLRKGNA---HNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPS-------DW 358 (751)
T ss_dssp EECSSCEEEEEEESSSCTT---CCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTT-------CC
T ss_pred ecCCCCceEEEEECCCCCC---CceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcc-------cc
Confidence 63 34688888876421 11 11222233444555555444444444433 356666765421 22
Q ss_pred EE-ecccccccc--ceeEEEEeeeCCCcEEEEecCCCeEEEE
Q 048511 265 HE-VARPQVHGH--DINCVTIIQGKGNHRFVSGADEKVARVF 303 (351)
Q Consensus 265 ~~-~~~~~~~~~--~i~~~~~~~~~~~~~l~s~~~dg~v~vw 303 (351)
.. +. .+.. .+..+++. ++.++++...++..+||
T Consensus 359 ~~~li---~~~~~~~l~~~~~~---~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 359 SHVLV---DHSEDVFMESIAVR---SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp CCEEE---CCCSSEEEEEEEEC---SSEEEEEEEETTEEEEE
T ss_pred eeeEE---CCCCCcEEEEEEEE---CCEEEEEEEeCCEEEEE
Confidence 22 21 1222 34444443 35667777788865554
No 279
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.04 E-value=0.0029 Score=52.48 Aligned_cols=145 Identities=10% Similarity=0.116 Sum_probs=77.9
Q ss_pred eEEeecC-----CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-----CeEEEEEcccCccc
Q 048511 141 ILSASMD-----KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-----GAFHLWRNVGVDID 210 (351)
Q Consensus 141 l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~ 210 (351)
++.|+.+ ..+.+||+.+ ..+...-.+. ........+.+ +++.++.|+.+ ..+.+||+.+..
T Consensus 116 yv~GG~~~~~~~~~~~~~d~~~--~~W~~~~~~p---~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~-- 186 (301)
T 2vpj_A 116 YVSGGFDGSRRHTSMERYDPNI--DQWSMLGDMQ---TAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGH-- 186 (301)
T ss_dssp EEECCBCSSCBCCEEEEEETTT--TEEEEEEECS---SCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE--
T ss_pred EEEcccCCCcccceEEEEcCCC--CeEEECCCCC---CCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCc--
Confidence 5555543 3578888887 5555433211 11111222222 66777777654 468899987754
Q ss_pred CcccccccccccccEEEEEeecCCCEEEEEeCC-----CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeee
Q 048511 211 NWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD-----QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQG 285 (351)
Q Consensus 211 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 285 (351)
|..+..+.........+. -++++++.|+.+ ..+.+||+.+. .|..+..+....... ++ ...
T Consensus 187 -W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~--------~W~~~~~~p~~r~~~-~~-~~~- 252 (301)
T 2vpj_A 187 -WTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTD--------SWTTVTSMTTPRCYV-GA-TVL- 252 (301)
T ss_dssp -EEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTT--------EEEEECCCSSCCBSC-EE-EEE-
T ss_pred -EEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCC--------cEEECCCCCCcccce-eE-EEE-
Confidence 233322222111112222 256777777764 46889998765 466665443222212 22 223
Q ss_pred CCCcEEEEecCC-----CeEEEEecCchh
Q 048511 286 KGNHRFVSGADE-----KVARVFEAPLSF 309 (351)
Q Consensus 286 ~~~~~l~s~~~d-----g~v~vw~~~~~~ 309 (351)
++.+++.|+.+ ..+.+||+....
T Consensus 253 -~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 253 -RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp -TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred -CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 57788888765 457788876443
No 280
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.03 E-value=0.0022 Score=55.41 Aligned_cols=163 Identities=10% Similarity=-0.065 Sum_probs=98.4
Q ss_pred cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEE-EEE
Q 048511 115 DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSI-LAH 193 (351)
Q Consensus 115 ~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~ 193 (351)
..+..++|.+ .++.+ +++-...+.|..+++.. ......+. ........+++++.+..| ++-
T Consensus 116 ~~~~gl~~d~-----~~~~l------y~~D~~~~~I~r~~~~g--~~~~~~~~-----~~~~~p~glavd~~~g~lY~~d 177 (386)
T 3v65_B 116 ENAIALDFHH-----RRELV------FWSDVTLDRILRANLNG--SNVEEVVS-----TGLESPGGLAVDWVHDKLYWTD 177 (386)
T ss_dssp SCEEEEEEET-----TTTEE------EEEETTTTEEEEEETTS--CCEEEEEC-----SSCSCCCCEEEETTTTEEEEEE
T ss_pred CccEEEEEec-----CCCeE------EEEeCCCCcEEEEecCC--CCcEEEEe-----CCCCCccEEEEEeCCCeEEEEc
Confidence 3477899995 44555 66666778899999875 32222211 111234578888765555 444
Q ss_pred eeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe-CC-CcEEEEcCCCccccccCccceEEecccc
Q 048511 194 GYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS-HD-QTTRVFAPWKNVASLMGENSWHEVARPQ 271 (351)
Q Consensus 194 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~ 271 (351)
...+.|.++++.... ....+.........+++.|.+..|+... .. +.|..+++..... ..+..
T Consensus 178 ~~~~~I~~~~~dg~~-----~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~--------~~~~~-- 242 (386)
T 3v65_B 178 SGTSRIEVANLDGAH-----RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR--------RIIAD-- 242 (386)
T ss_dssp TTTTEEEECBTTSCS-----CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--------EEEEC--
T ss_pred CCCCeEEEEeCCCCc-----eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc--------EEEEE--
Confidence 456889888887642 1112222334678999998766655443 34 6788888754431 11111
Q ss_pred ccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhh
Q 048511 272 VHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLK 311 (351)
Q Consensus 272 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~ 311 (351)
......+.+++++ .++.++++-+..+.|..+++.+...+
T Consensus 243 ~~~~~PnGlavd~-~~~~lY~aD~~~~~I~~~d~dG~~~~ 281 (386)
T 3v65_B 243 THLFWPNGLTIDY-AGRRMYWVDAKHHVIERANLDGSHRK 281 (386)
T ss_dssp SSCSCEEEEEEEG-GGTEEEEEETTTTEEEEECTTSCSCE
T ss_pred CCCCCeeeEEEeC-CCCEEEEEECCCCEEEEEeCCCCeeE
Confidence 1123468899997 24556666667889999998865443
No 281
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.02 E-value=0.00056 Score=56.85 Aligned_cols=166 Identities=8% Similarity=0.040 Sum_probs=104.5
Q ss_pred eEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccc--c-cccceEEEEE---cCCCCEE
Q 048511 117 VYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELS--H-SALGFYGGHW---SPDGRSI 190 (351)
Q Consensus 117 v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~-~~~~i~~i~~---~~~~~~l 190 (351)
-.++.|.+ .++.+ +++.-..++|..||... +..... .+.... + ....+..+.| .|+++++
T Consensus 15 PE~~~wd~-----~~g~~------~vs~l~~g~V~~~~~~~--~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~ 80 (334)
T 2p9w_A 15 PEDTIYDR-----TRQVF------YQSNLYKGRIEVYNPKT--QSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLF 80 (334)
T ss_dssp CSCEEEET-----TTTEE------EEEETTTTEEEEECTTT--CCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEE
T ss_pred CcCccCcC-----CCCEE------EEEeccCCEEEEEcCCC--CeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEE
Confidence 44678874 34555 55555799999999875 333222 222111 1 1224578999 6887777
Q ss_pred EEEee-------------CCeEEEEEcc---cCcccCccccccccc-----------ccccEEEEEeecCCCEEEEEeCC
Q 048511 191 LAHGY-------------GGAFHLWRNV---GVDIDNWQPQKVPSG-----------HFAAVMDISWSRSSDYLLSVSHD 243 (351)
Q Consensus 191 ~~~~~-------------dg~i~~~d~~---~~~~~~~~~~~~~~~-----------~~~~v~~v~~sp~~~~l~s~~~d 243 (351)
++... +..|..||+. +++.. ....+.. -......++..++|+..++++.-
T Consensus 81 vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~---~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~ 157 (334)
T 2p9w_A 81 AVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPV---WSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALG 157 (334)
T ss_dssp EEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCS---EEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEES
T ss_pred EEEcccccccccccccCCCCEEEEEcCCcCCCCCEE---EEecCccccccccccccccccCCceeEECCCCCEEEeCCCC
Confidence 75442 6789999998 55321 1111111 11347899999999999998888
Q ss_pred -CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 244 -QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 244 -g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
+.|...+..... ...|..-..........+.++++| ++.+|++...+|.+..+|+.
T Consensus 158 ~~~I~rV~pdG~~-----~~~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 158 MPAIARVSADGKT-----VSTFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp SCEEEEECTTSCC-----EEEEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECS
T ss_pred CCeEEEEeCCCCE-----EeeeeecCCCcccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCC
Confidence 888877775443 122322111112223478999999 88877777669999999977
No 282
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.00 E-value=0.0095 Score=56.35 Aligned_cols=166 Identities=9% Similarity=-0.093 Sum_probs=99.2
Q ss_pred cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe
Q 048511 115 DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG 194 (351)
Q Consensus 115 ~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 194 (351)
.....|++.+ ..+++ +++-...+.|.+.++.. .. ...+.. ..-.....|+++|...+|+.+.
T Consensus 471 ~~P~GLAvD~-----~~~~L------Y~tD~~~~~I~v~~ldG--~~-~~~l~~----~~l~~P~gIaVDp~~g~LYwtD 532 (791)
T 3m0c_C 471 QAPDGLAVDW-----IHSNI------YWTDSVLGTVSVADTKG--VK-RKTLFR----ENGSKPRAIVVDPVHGFMYWTD 532 (791)
T ss_dssp SCCCEEEEET-----TTTEE------EEEETTTTEEEEEETTS--SS-EEEEEE----CTTCCEEEEEEETTTTEEEEEE
T ss_pred CCcceeeeee-----cCCcE------EEEecCCCeEEEEeCCC--Ce-EEEEEe----CCCCCcceEEEecCCCCEEEec
Confidence 3455777773 23355 66666788999999875 22 222221 2223478999999876666655
Q ss_pred e-C-CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE-eCCCcEEEEcCCCccccccCccceEEecccc
Q 048511 195 Y-G-GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV-SHDQTTRVFAPWKNVASLMGENSWHEVARPQ 271 (351)
Q Consensus 195 ~-d-g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 271 (351)
. . +.|...++..... ...+...-.....|++.+.+..|+.+ .....|..+++..... ...+.. .
T Consensus 533 ~g~~~~I~~~~~dG~~~-----~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-------~~v~~~-~ 599 (791)
T 3m0c_C 533 WGTPAKIKKGGLNGVDI-----YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KTILED-E 599 (791)
T ss_dssp CSSSCEEEEEETTSCCE-----EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEEEEC-T
T ss_pred CCCCCeEEEEecCCCce-----EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-------EEEecC-C
Confidence 3 2 7888888876431 11222233568899999876666555 4467899998865431 111111 1
Q ss_pred ccccceeEEEEeeeCCCcEEEEecCCCeEEEEec-Cchhhhcee
Q 048511 272 VHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA-PLSFLKTLN 314 (351)
Q Consensus 272 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~-~~~~~~~~~ 314 (351)
..-.....|++.. +.++++-...+.|...+. .+..+..+.
T Consensus 600 ~~l~~P~glav~~---~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 600 KRLAHPFSLAVFE---DKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp TTTSSEEEEEEET---TEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred CccCCCCEEEEeC---CEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 1111244666643 567777777888888874 465555553
No 283
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.95 E-value=0.0027 Score=52.85 Aligned_cols=148 Identities=8% Similarity=0.091 Sum_probs=79.0
Q ss_pred eEEeecC------CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee---------CCeEEEEEcc
Q 048511 141 ILSASMD------KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY---------GGAFHLWRNV 205 (351)
Q Consensus 141 l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---------dg~i~~~d~~ 205 (351)
++.|+.+ ..+.+||+.+ ..+...-. ..........+.+ +++.++.|+. -..+.+||+.
T Consensus 105 yv~GG~~~~~~~~~~~~~~d~~~--~~W~~~~~---~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 177 (306)
T 3ii7_A 105 YTSGGSEVGNSALYLFECYDTRT--ESWHTKPS---MLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPA 177 (306)
T ss_dssp EEECCBBTTBSCCCCEEEEETTT--TEEEEECC---CSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETT
T ss_pred EEECCCCCCCcEeeeEEEEeCCC--CceEeCCC---CcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCC
Confidence 6666654 4588889887 55544322 1111111222222 5666666664 3458899987
Q ss_pred cCcccCcccccccccccccEEEEEeecCCCEEEEEeCC-----CcEEEEcCCCccccccCccceEEeccccccccceeEE
Q 048511 206 GVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD-----QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCV 280 (351)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (351)
+.. |..+..+......-. ++.. ++++++.|+.+ ..+.+||+.+. .|..+..+........++
T Consensus 178 ~~~---W~~~~~~p~~r~~~~-~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~--------~W~~~~~~p~~r~~~~~~ 244 (306)
T 3ii7_A 178 TET---WTELCPMIEARKNHG-LVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLN--------EWKMVSPMPWKGVTVKCA 244 (306)
T ss_dssp TTE---EEEECCCSSCCBSCE-EEEE-TTEEEEECCEETTEEBCCEEEEETTTT--------EEEECCCCSCCBSCCEEE
T ss_pred CCe---EEECCCccchhhcce-EEEE-CCEEEEEeCCCCCCCCceEEEeeCCCC--------cEEECCCCCCCccceeEE
Confidence 764 233332222111112 2222 56677777653 35888988665 477665443322222222
Q ss_pred EEeeeCCCcEEEEecCC-----CeEEEEecCchhhhc
Q 048511 281 TIIQGKGNHRFVSGADE-----KVARVFEAPLSFLKT 312 (351)
Q Consensus 281 ~~~~~~~~~~l~s~~~d-----g~v~vw~~~~~~~~~ 312 (351)
.+ ++.+++.|+.+ ..+.+||+....-..
T Consensus 245 ~~----~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 277 (306)
T 3ii7_A 245 AV----GSIVYVLAGFQGVGRLGHILEYNTETDKWVA 277 (306)
T ss_dssp EE----TTEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred EE----CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence 22 57788888854 468888887543333
No 284
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.92 E-value=0.006 Score=55.76 Aligned_cols=54 Identities=9% Similarity=0.063 Sum_probs=34.4
Q ss_pred CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511 196 GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 196 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
+|.|..||+.+++. +-+.... ..+..-.....+.+++.++.|+.++.||.++++
T Consensus 465 ~G~l~A~D~~tG~~-----~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~ 518 (582)
T 1flg_A 465 VGSLRAMDPVSGKV-----VWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGK 518 (582)
T ss_dssp SEEEEEECTTTCCE-----EEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cceEEEEECCCCCE-----EEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCC
Confidence 57888899888753 2121111 112111222346678889999999999999998
No 285
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.88 E-value=0.0078 Score=50.38 Aligned_cols=168 Identities=10% Similarity=-0.076 Sum_probs=97.1
Q ss_pred cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCC-cceEEEEEeccccccccceEEEEEcCCCCEEE-E
Q 048511 115 DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTT-GIWMNVVTVGELSHSALGFYGGHWSPDGRSIL-A 192 (351)
Q Consensus 115 ~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~ 192 (351)
..+..++|.+ .++.+ +++-...+.|..+++.... +.....+. ...-.....+++++.+..|+ +
T Consensus 30 ~~p~g~~~d~-----~~~~l------y~~D~~~~~I~~~~~~g~~~~~~~~~~~----~~~~~~p~glavd~~~~~ly~~ 94 (316)
T 1ijq_A 30 RNVVALDTEV-----ASNRI------YWSDLSQRMICSTQLDRAHGVSSYDTVI----SRDIQAPDGLAVDWIHSNIYWT 94 (316)
T ss_dssp SSEEEEEEET-----TTTEE------EEEETTTTEEEEEEC--------CEEEE----CSSCSCCCEEEEETTTTEEEEE
T ss_pred CceEEEEEEe-----CCCEE------EEEECCCCcEEEEECCCCCCCcccEEEE----eCCCCCcCEEEEeecCCeEEEE
Confidence 3567889984 34455 6666667889999887410 01111111 01112356788987555454 4
Q ss_pred EeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-C-CcEEEEcCCCccccccCccceEEeccc
Q 048511 193 HGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-D-QTTRVFAPWKNVASLMGENSWHEVARP 270 (351)
Q Consensus 193 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-d-g~i~vwd~~~~~~~~~~~~~~~~~~~~ 270 (351)
-...+.|.++++..... ...+.........+++.|.+..|+.+.. . +.|..+++.... .+.+..
T Consensus 95 d~~~~~I~~~~~~g~~~-----~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~--------~~~~~~- 160 (316)
T 1ijq_A 95 DSVLGTVSVADTKGVKR-----KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--------IYSLVT- 160 (316)
T ss_dssp ETTTTEEEEEETTSSSE-----EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--------EEEEEC-
T ss_pred ECCCCEEEEEeCCCCce-----EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC--------eEEEEE-
Confidence 45678999999876421 1112222346789999996665554443 2 678888875432 111211
Q ss_pred cccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhce
Q 048511 271 QVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTL 313 (351)
Q Consensus 271 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 313 (351)
......+.+++++ .++.++++-+..+.|..+++.+...+.+
T Consensus 161 -~~~~~P~gla~d~-~~~~lY~~D~~~~~I~~~d~dg~~~~~~ 201 (316)
T 1ijq_A 161 -ENIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNGGNRKTI 201 (316)
T ss_dssp -SSCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred -CCCCCceEEEEec-cCCEEEEEECCCCeEEEEecCCCceEEE
Confidence 1123478899997 2345556666778999999987555544
No 286
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.88 E-value=0.0062 Score=52.90 Aligned_cols=169 Identities=10% Similarity=-0.059 Sum_probs=99.2
Q ss_pred ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc-ceEEEEEeccccccccceEEEEEcCCCCEE-E
Q 048511 114 EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG-IWMNVVTVGELSHSALGFYGGHWSPDGRSI-L 191 (351)
Q Consensus 114 ~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~ 191 (351)
...+..++|.+ .++.+ +++-...+.|+.+++..... .....+. .........+++++.+..| +
T Consensus 111 ~~~~~~l~~d~-----~~~~l------ywsD~~~~~I~~~~~~g~~~~~~~~~~~----~~~~~~p~glavD~~~~~lY~ 175 (400)
T 3p5b_L 111 LRNVVALDTEV-----ASNRI------YWSDLSQRMICSTQLDRAHGVSSYDTVI----SRDIQAPDGLAVDWIHSNIYW 175 (400)
T ss_dssp CSCEEEEEEET-----TTTEE------EEEETTTTEEEEEEC------CCCEEEE----CSSCSCEEEEEEETTTTEEEE
T ss_pred cCcceEEeeee-----ccCce------EEEecCCCeEEEEEcccCCCCCcceEEE----eCCCCCcccEEEEecCCceEE
Confidence 45678899995 34555 56655678888888864110 1111111 1223356789998854444 4
Q ss_pred EEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC--CCcEEEEcCCCccccccCccceEEecc
Q 048511 192 AHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH--DQTTRVFAPWKNVASLMGENSWHEVAR 269 (351)
Q Consensus 192 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~ 269 (351)
+-...+.|.+.++.... ....+.........|++.|.+.+|+.... .+.|...++..... ..+..
T Consensus 176 ~d~~~~~I~~~~~~g~~-----~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~--------~~~~~ 242 (400)
T 3p5b_L 176 TDSVLGTVSVADTKGVK-----RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--------YSLVT 242 (400)
T ss_dssp EETTTTEEEEECTTTCS-----EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC--------EEEEC
T ss_pred EECCCCeEEEEeCCCCc-----eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc--------EEEEE
Confidence 44567899999987652 11122223345789999996666554432 46788888765431 11111
Q ss_pred ccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhce
Q 048511 270 PQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTL 313 (351)
Q Consensus 270 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 313 (351)
..-...+.|++++ .++.++++-.....|..+++.+...+.+
T Consensus 243 --~~l~~P~glavd~-~~~~lY~aD~~~~~I~~~d~dG~~~~~~ 283 (400)
T 3p5b_L 243 --ENIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNGGNRKTI 283 (400)
T ss_dssp --SSCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCCCEEE
T ss_pred --CCCCceEEEEEEe-CCCEEEEEECCCCEEEEEeCCCCccEEE
Confidence 1123478899997 2345555556778999999887655544
No 287
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.88 E-value=0.0086 Score=50.39 Aligned_cols=224 Identities=10% Similarity=0.108 Sum_probs=116.1
Q ss_pred CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc---cccceeeeEeeecCCeEEecCCceeEE
Q 048511 29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST---YRKEVISLASYIEGPVLVAGSSSYQVS 105 (351)
Q Consensus 29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~ 105 (351)
...+.+|.|. ..+..++ ++.+|.| +...+.++.-...... .......+.+.+ +..++++.. +.+.
T Consensus 35 ~~~~~~v~~~--------~~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~g~~-g~i~ 102 (327)
T 2xbg_A 35 TATILDMSFI--------DRHHGWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIVGEP-PIML 102 (327)
T ss_dssp SSCEEEEEES--------SSSCEEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEEEET-TEEE
T ss_pred CCcEEEEEEC--------CCCcEEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEEECC-CeEE
Confidence 4578999987 5566666 5567765 3333333322211111 123456677764 444444322 2211
Q ss_pred -------EEEecc---ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc
Q 048511 106 -------VESLLI---GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA 175 (351)
Q Consensus 106 -------~~~~~~---~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 175 (351)
.|.... .+...+..+.+. .++.. ++.+ .++.| |.-......+..... ...
T Consensus 103 ~S~DgG~tW~~~~~~~~~~~~~~~i~~~------~~~~~------~~~~-~~g~v--~~S~DgG~tW~~~~~-----~~~ 162 (327)
T 2xbg_A 103 HTTDGGQSWSQIPLDPKLPGSPRLIKAL------GNGSA------EMIT-NVGAI--YRTKDSGKNWQALVQ-----EAI 162 (327)
T ss_dssp EESSTTSSCEECCCCTTCSSCEEEEEEE------ETTEE------EEEE-TTCCE--EEESSTTSSEEEEEC-----SCC
T ss_pred EECCCCCCceECccccCCCCCeEEEEEE------CCCCE------EEEe-CCccE--EEEcCCCCCCEEeec-----CCC
Confidence 122211 123456777776 45555 5554 45543 322221123333222 234
Q ss_pred cceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511 176 LGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 176 ~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
..+..+++.+++.+++++...+..+-.|-. + ..|+.+. ......+..+.+.+++++++ ++.+|.+++.+...+.
T Consensus 163 ~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G--~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~ 236 (327)
T 2xbg_A 163 GVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-Q--TAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSE 236 (327)
T ss_dssp CCEEEEEECTTSCEEEEETTSSEEEEECTT-C--SSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEE
T ss_pred cceEEEEEcCCCcEEEEECCCcEEEEeCCC-C--CceeECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCC
Confidence 468899999988877766444433333321 1 1123332 12345788899999987665 4567888776422233
Q ss_pred ccccCccceEEeccc-cccccceeEEEEeeeCCCcEEEEecCCCeE
Q 048511 256 ASLMGENSWHEVARP-QVHGHDINCVTIIQGKGNHRFVSGADEKVA 300 (351)
Q Consensus 256 ~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v 300 (351)
.|..+... ......+.++++.+ ++.+++++. +|.|
T Consensus 237 -------tW~~~~~~~~~~~~~~~~v~~~~--~~~~~~~g~-~g~i 272 (327)
T 2xbg_A 237 -------NWGELLSPLRRNSVGFLDLAYRT--PNEVWLAGG-AGAL 272 (327)
T ss_dssp -------EECCCBCTTSSCCSCEEEEEESS--SSCEEEEES-TTCE
T ss_pred -------eeEeccCCcccCCcceEEEEecC--CCEEEEEeC-CCeE
Confidence 55554433 12234578888887 676666654 5655
No 288
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.87 E-value=0.0045 Score=51.35 Aligned_cols=147 Identities=14% Similarity=0.209 Sum_probs=78.2
Q ss_pred eEEeecCC-----eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-------CeEEEEEcccCc
Q 048511 141 ILSASMDK-----TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-------GAFHLWRNVGVD 208 (351)
Q Consensus 141 l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-------g~i~~~d~~~~~ 208 (351)
++.|+.++ .+.+||+.+ ..+...-. ..........+.+ +++.++.|+.+ ..+.+||+.+..
T Consensus 112 yv~GG~~~~~~~~~~~~~d~~~--~~W~~~~~---~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 184 (302)
T 2xn4_A 112 YAVGGFDGSTGLSSVEAYNIKS--NEWFHVAP---MNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNE 184 (302)
T ss_dssp EEEEEECSSCEEEEEEEEETTT--TEEEEECC---CSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred EEEcCCCCCccCceEEEEeCCC--CeEeecCC---CCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence 66666543 477888887 55544322 1111112222222 56666666643 358889987754
Q ss_pred ccCcccccccccccccEEEEEeecCCCEEEEEeCC-----CcEEEEcCCCccccccCccceEEeccccccccceeEEEEe
Q 048511 209 IDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD-----QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTII 283 (351)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 283 (351)
|..+..+.........+. -++++++.|+.+ ..+.+||+.+. .|..+..+...... ..++.
T Consensus 185 ---W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~--------~W~~~~~~~~~r~~-~~~~~- 249 (302)
T 2xn4_A 185 ---WTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTN--------AWRQVADMNMCRRN-AGVCA- 249 (302)
T ss_dssp ---EEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTT--------EEEEECCCSSCCBS-CEEEE-
T ss_pred ---EEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCC--------CEeeCCCCCCcccc-CeEEE-
Confidence 233322222111112222 256777777754 36889998665 46666544322211 12222
Q ss_pred eeCCCcEEEEecCCC-----eEEEEecCchhhh
Q 048511 284 QGKGNHRFVSGADEK-----VARVFEAPLSFLK 311 (351)
Q Consensus 284 ~~~~~~~l~s~~~dg-----~v~vw~~~~~~~~ 311 (351)
. ++.+++.|+.++ .+.+||+....-.
T Consensus 250 ~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 250 V--NGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp E--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred E--CCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 3 578888888654 4788888744333
No 289
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.87 E-value=0.00021 Score=66.86 Aligned_cols=164 Identities=9% Similarity=-0.086 Sum_probs=93.5
Q ss_pred eEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee-
Q 048511 117 VYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY- 195 (351)
Q Consensus 117 v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~- 195 (351)
...|++.+ ..+++ +++-...+.|.++++.. .. ...+.. ........++++|.+.+|+.+..
T Consensus 455 P~glavD~-----~~g~L------Y~tD~~~~~I~v~d~dg--~~-~~~l~~----~~~~~P~giavDp~~g~ly~td~~ 516 (699)
T 1n7d_A 455 PDGLAVDW-----IHSNI------YWTDSVLGTVSVADTKG--VK-RKTLFR----EQGSKPRAIVVDPVHGFMYWTDWG 516 (699)
T ss_dssp CCCEECCC-----SSSBC------EECCTTTSCEEEEBSSS--CC-EEEECC----CSSCCCCCEECCSSSSCCEECCCS
T ss_pred cceEEEEe-----eCCcE------EEEeccCCeEEEEecCC--Cc-eEEEEe----CCCCCcceEEEccCCCcEEEcccC
Confidence 34566663 34455 55555678899998875 22 222210 11223467889997666655543
Q ss_pred C-CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEE-EEEeCCCcEEEEcCCCccccccCccceEEecccccc
Q 048511 196 G-GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYL-LSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVH 273 (351)
Q Consensus 196 d-g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 273 (351)
. +.|..+++..... ...+...-.....|+|+|++..| ++-+..+.|.++++..... +.+......
T Consensus 517 ~~~~I~~~~~dG~~~-----~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~--------~~~~~~~~~ 583 (699)
T 1n7d_A 517 TPAKIKKGGLNGVDI-----YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR--------KTILEDEKR 583 (699)
T ss_dssp SSCCEEBCCSSSCCC-----CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC--------EEECCCSSS
T ss_pred CCCeEEEEeCCCCCe-----eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce--------EEEEecCCc
Confidence 2 6788887765321 11111122346789999876554 4445678899999864331 122211111
Q ss_pred ccceeEEEEeeeCCCcEEEEecCCCeEEEEec-Cchhhhcee
Q 048511 274 GHDINCVTIIQGKGNHRFVSGADEKVARVFEA-PLSFLKTLN 314 (351)
Q Consensus 274 ~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~-~~~~~~~~~ 314 (351)
......|++.. +.++++....+.|..++. .++.+..+.
T Consensus 584 ~~~P~glavd~---~~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 584 LAHPFSLAVFE---DKVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp CSSCCCCEEET---TEEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred CCCceEeEEEC---CEEEEEeCCCCeEEEEEccCCCceEEee
Confidence 12245666654 467777778889999986 466555553
No 290
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.71 E-value=0.023 Score=50.38 Aligned_cols=243 Identities=11% Similarity=0.032 Sum_probs=132.4
Q ss_pred eeEEEeeCCcccCCCC-CccEEEEee-CCCcEEEEecCCCcccceeecc--cccceeeeEe-------eecCCeEEecCC
Q 048511 32 IRSLDFSLPVCTSGEA-ISILLVSSS-QDKVIRIWKLALRGSSANTQST--YRKEVISLAS-------YIEGPVLVAGSS 100 (351)
Q Consensus 32 V~~l~~~~~~~~~~~~-~~~~l~t~~-~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~-------~~~~~~l~~~~~ 100 (351)
...|+|. | ++..|+.+. ..+.|++.|+..+......... .......+++ ++++..|++++.
T Consensus 141 p~~la~d--------p~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~ 212 (496)
T 3kya_A 141 NGRLAFD--------PLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAID 212 (496)
T ss_dssp EEEEEEE--------TTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEEC
T ss_pred CCEEEEc--------cCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeC
Confidence 4578888 5 344455444 3467888888765543322221 1235778889 999986665443
Q ss_pred ce-------eEEEEEecc--ccc-----------cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEecc----
Q 048511 101 SY-------QVSVESLLI--GHE-----------DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPE---- 156 (351)
Q Consensus 101 ~~-------~~~~~~~~~--~h~-----------~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~---- 156 (351)
.. .+..+..-. ... .....++++| .++.+ +++-..++.|..+|+.
T Consensus 213 ~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp-----~~g~L------Yvtd~~~g~V~r~d~~~~~~ 281 (496)
T 3kya_A 213 YDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHP-----INGEL------YFNSYEKGQVFRLDLVDYFK 281 (496)
T ss_dssp CCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECT-----TTCCE------EEEETTTTEEEEECHHHHHH
T ss_pred CCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcC-----CCCeE------EEEECCCCEEEEEecccccc
Confidence 32 122221111 000 1123455663 24555 6667778889999997
Q ss_pred ---CCCcce-----------EEE-EEeccccccccceEEEEEcCCCCEEEEEe-eCCeEEEEEcccCcccCccccccccc
Q 048511 157 ---KTTGIW-----------MNV-VTVGELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNVGVDIDNWQPQKVPSG 220 (351)
Q Consensus 157 ---~~~~~~-----------~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~ 220 (351)
+ +.. ... +.. ......+.++|+|++++|+.+. ..+.|+.++....... +.....+.+
T Consensus 282 ~~~t--g~~~tp~~~~~~g~~~~l~~~----~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~-~~~~~~~aG 354 (496)
T 3kya_A 282 TIKN--GGSWDPIVKNNPNTFKQLFTI----ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKE-FITPYNFVG 354 (496)
T ss_dssp HHHT--TCCCCCBGGGCTTTEEEEEEC----SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE-ECCCEEEEE
T ss_pred cccC--ceeecccccccccccceeEec----CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcce-ecccEEecC
Confidence 4 221 111 221 2233467899999999666554 5688988776442100 000011111
Q ss_pred ---------------ccccEE-EEEee-------cCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecc--------
Q 048511 221 ---------------HFAAVM-DISWS-------RSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVAR-------- 269 (351)
Q Consensus 221 ---------------~~~~v~-~v~~s-------p~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-------- 269 (351)
.-.... .++.. +++.++++=..+..|+.++. ++.. .++.-...
T Consensus 355 ~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v-----~TiaG~g~~~~~~~~~ 428 (496)
T 3kya_A 355 GYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIV-----STYAGRGASTSLADGN 428 (496)
T ss_dssp BTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBE-----EEEEESCTTHHHHHSC
T ss_pred CCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCCE-----EEEecccccccccCcc
Confidence 111244 44554 45666666667789999984 3321 11110000
Q ss_pred ----------ccccccceeEEEEeeeCC-CcEEEEecCCCeEEEEecCch
Q 048511 270 ----------PQVHGHDINCVTIIQGKG-NHRFVSGADEKVARVFEAPLS 308 (351)
Q Consensus 270 ----------~~~~~~~i~~~~~~~~~~-~~~l~s~~~dg~v~vw~~~~~ 308 (351)
..+.-.....|++.+ + +.++++=....+||.+++++.
T Consensus 429 ~~G~~dG~~~~~a~f~~P~gIavd~--~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 429 QWGTDDGDLREVARFRDVSGLVYDD--VKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp SCCCCCEETTTTCCCSSEEEEEEET--TTTEEEEEETTTTEEEEEEECCC
T ss_pred ccccCCCCchhhhhcCCCcEEEEEC--CCCEEEEEeCCCCEEEEEECCCC
Confidence 000112367889987 5 777787778889999998753
No 291
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.71 E-value=0.008 Score=50.36 Aligned_cols=165 Identities=10% Similarity=-0.068 Sum_probs=98.1
Q ss_pred ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEE-EEEe
Q 048511 116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSI-LAHG 194 (351)
Q Consensus 116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~ 194 (351)
.+..++|.+ .++.+ +++-...+.|..+++.. ......+.. ..-.....+++.+.+..| ++-.
T Consensus 36 ~~~~ld~d~-----~~~~l------yw~D~~~~~I~r~~~~g--~~~~~~~~~----~~l~~p~glavd~~~g~ly~~d~ 98 (318)
T 3sov_A 36 DAAAVDFVF-----SHGLI------YWSDVSEEAIKRTEFNK--TESVQNVVV----SGLLSPDGLACDWLGEKLYWTDS 98 (318)
T ss_dssp EEEEEEEEG-----GGTEE------EEEETTTTEEEEEETTS--SSCCCEEEE----ECCSCCCEEEEETTTTEEEEEET
T ss_pred ccEEEEEEe-----CCCEE------EEEECCCCcEEEEEccC--CCceEEEEc----CCCCCccEEEEEcCCCeEEEEEC
Confidence 456788884 34555 66666678898888876 221111111 111235678888755544 4445
Q ss_pred eCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe--CCCcEEEEcCCCccccccCccceEEeccccc
Q 048511 195 YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS--HDQTTRVFAPWKNVASLMGENSWHEVARPQV 272 (351)
Q Consensus 195 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 272 (351)
..+.|.++++..... ...+.........+++.|.+..|+.+. ..+.|...++..... ..+.. .
T Consensus 99 ~~~~I~~~~~dG~~~-----~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~--------~~~~~--~ 163 (318)
T 3sov_A 99 ETNRIEVSNLDGSLR-----KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR--------FIIIN--S 163 (318)
T ss_dssp TTTEEEEEETTSCSC-----EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC--------EEEEC--S
T ss_pred CCCEEEEEECCCCcE-----EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe--------EEEEE--C
Confidence 668999999876421 111222334578999999766655544 357788888754321 11111 1
Q ss_pred cccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhce
Q 048511 273 HGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTL 313 (351)
Q Consensus 273 ~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 313 (351)
.-...+.+++++ .++.++++=+..+.|..+++.+...+.+
T Consensus 164 ~l~~Pnglavd~-~~~~lY~aD~~~~~I~~~d~dG~~~~~~ 203 (318)
T 3sov_A 164 EIYWPNGLTLDY-EEQKLYWADAKLNFIHKSNLDGTNRQAV 203 (318)
T ss_dssp SCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred CCCCccEEEEec-cCCEEEEEECCCCEEEEEcCCCCceEEE
Confidence 123368899997 2355556666788999999886555444
No 292
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.70 E-value=0.016 Score=48.18 Aligned_cols=147 Identities=10% Similarity=0.125 Sum_probs=78.2
Q ss_pred eEEeecC-----CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-----CeEEEEEcccCccc
Q 048511 141 ILSASMD-----KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-----GAFHLWRNVGVDID 210 (351)
Q Consensus 141 l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~ 210 (351)
++.|+.+ ..+.+||+.+ ..+...-. ..........+.+ +++.++.|+.+ ..+.+||+.+..
T Consensus 125 yv~GG~~~~~~~~~~~~yd~~~--~~W~~~~~---~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-- 195 (308)
T 1zgk_A 125 YAVGGSHGCIHHNSVERYEPER--DEWHLVAP---MLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNE-- 195 (308)
T ss_dssp EEECCEETTEECCCEEEEETTT--TEEEECCC---CSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE--
T ss_pred EEEcCCCCCcccccEEEECCCC--CeEeECCC---CCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCe--
Confidence 5555533 3578888887 55543222 1111112222233 56677777654 458899987754
Q ss_pred CcccccccccccccEEEEEeecCCCEEEEEeCC-----CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeee
Q 048511 211 NWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD-----QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQG 285 (351)
Q Consensus 211 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 285 (351)
|..+..+......-..+.+ ++++++.|+.+ ..+.+||+.+. .|..+..+...... .+++. -
T Consensus 196 -W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~--------~W~~~~~~p~~r~~-~~~~~-~- 261 (308)
T 1zgk_A 196 -WRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE--------TWTFVAPMKHRRSA-LGITV-H- 261 (308)
T ss_dssp -EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT--------EEEECCCCSSCCBS-CEEEE-E-
T ss_pred -EeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC--------cEEECCCCCCCccc-eEEEE-E-
Confidence 2333222222222222222 66777777664 46889998765 46666544322221 22222 2
Q ss_pred CCCcEEEEecCC-----CeEEEEecCchhhh
Q 048511 286 KGNHRFVSGADE-----KVARVFEAPLSFLK 311 (351)
Q Consensus 286 ~~~~~l~s~~~d-----g~v~vw~~~~~~~~ 311 (351)
++.+++.|+.+ ..+.+||+....-.
T Consensus 262 -~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 262 -QGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp -TTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred -CCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 57888888754 35778887644333
No 293
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.67 E-value=0.016 Score=48.27 Aligned_cols=138 Identities=7% Similarity=0.060 Sum_probs=73.2
Q ss_pred CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee-C-----CeEEEEEcccCcccCcccccccccc
Q 048511 148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY-G-----GAFHLWRNVGVDIDNWQPQKVPSGH 221 (351)
Q Consensus 148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d-----g~i~~~d~~~~~~~~~~~~~~~~~~ 221 (351)
..+.+||+.+ ..+...-. .+........+. .+++.++.|+. + ..+.+||+.+.. |..+..+...
T Consensus 117 ~~~~~~d~~~--~~W~~~~~---~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~---W~~~~~~p~~ 186 (315)
T 4asc_A 117 DSVMCYDRLS--FKWGESDP---LPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFE---WKELAPMQTA 186 (315)
T ss_dssp CCEEEEETTT--TEEEECCC---CSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTE---EEECCCCSSC
T ss_pred ceEEEECCCC--CcEeECCC---CCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCe---EEECCCCCCc
Confidence 4588888887 55543222 111111122222 35667777776 2 468899987754 3333332222
Q ss_pred cccEEEEEeecCCCEEEEEeCCC-----cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecC
Q 048511 222 FAAVMDISWSRSSDYLLSVSHDQ-----TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD 296 (351)
Q Consensus 222 ~~~v~~v~~sp~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~ 296 (351)
...-..+. -++++++.|+.++ .+.+||+.+. .|..+..+....... +++. - ++.+++.|+.
T Consensus 187 r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~--------~W~~~~~~p~~r~~~-~~~~-~--~~~l~v~GG~ 252 (315)
T 4asc_A 187 RSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDN--------KWAPFEAFPQERSSL-SLVS-L--VGTLYAIGGF 252 (315)
T ss_dssp CBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTT--------EEEEECCCSSCCBSC-EEEE-E--TTEEEEEEEE
T ss_pred hhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCC--------eEEECCCCCCcccce-eEEE-E--CCEEEEECCc
Confidence 11112222 2667777777654 5788888665 477665443222212 2222 2 5778888876
Q ss_pred CC--------------eEEEEecCchh
Q 048511 297 EK--------------VARVFEAPLSF 309 (351)
Q Consensus 297 dg--------------~v~vw~~~~~~ 309 (351)
++ .+.+||+..+.
T Consensus 253 ~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 253 ATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp EEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred cccCcCCccccccccCcEEEecCCCCh
Confidence 42 36778877443
No 294
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.65 E-value=0.017 Score=50.60 Aligned_cols=218 Identities=10% Similarity=0.078 Sum_probs=110.3
Q ss_pred ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC-CC---cEEEEecCCCcccceeeccccc
Q 048511 6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ-DK---VIRIWKLALRGSSANTQSTYRK 81 (351)
Q Consensus 6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~-dg---~i~iwd~~~~~~~~~~~~~~~~ 81 (351)
+.|+.+|.+. +.... +.........|+|+ +++++|+.+.. ++ ...+|-...+............
T Consensus 159 ~~I~~id~~~-~~v~~---~~~~~~~P~~ia~d--------~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~ 226 (430)
T 3tc9_A 159 HPTRLIDFEK-EYVST---VYSGLSKVRTICWT--------HEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQ 226 (430)
T ss_dssp EEEEEEETTT-TEEEE---EECCCSCEEEEEEC--------TTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECS
T ss_pred CcEEEEECCC-CEEEE---EecCCCCcceEEEe--------CCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCC
Confidence 5677888876 54332 22234567899999 78886665543 22 1223333333222111111233
Q ss_pred ceeeeEeee-cCCeEEecCCceeEEEEEe-------c--cccccceEEEEecCCCCCCCCCc-ccCCCceeEEeecCCeE
Q 048511 82 EVISLASYI-EGPVLVAGSSSYQVSVESL-------L--IGHEDWVYSVQWEPPSTAPSDGV-SCQQPSSILSASMDKTM 150 (351)
Q Consensus 82 ~~~~~~~~~-~~~~l~~~~~~~~~~~~~~-------~--~~h~~~v~~l~~~p~~~~~~~~~-~~~~~~~l~s~~~d~~i 150 (351)
....+++.+ ++.++++......+..+.. + .+.......++|+ ++++ + +++-...+.|
T Consensus 227 ~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~------pdG~~l------yv~d~~~~~I 294 (430)
T 3tc9_A 227 NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFH------PSGNYA------YIVVVNQHYI 294 (430)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEEC------TTSSEE------EEEETTTTEE
T ss_pred CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEc------CCCCEE------EEEECCCCEE
Confidence 556778888 6666665444444433221 0 1111346789999 7887 4 5565677889
Q ss_pred EEEeccCCCcce--EEEEEec-cccc---------cccceE-EEEEc--------CCCCEEEEEeeCCeEEEEEcccCcc
Q 048511 151 MIWQPEKTTGIW--MNVVTVG-ELSH---------SALGFY-GGHWS--------PDGRSILAHGYGGAFHLWRNVGVDI 209 (351)
Q Consensus 151 ~iwd~~~~~~~~--~~~~~~~-~~~~---------~~~~i~-~i~~~--------~~~~~l~~~~~dg~i~~~d~~~~~~ 209 (351)
..++.....+.. ...+.-. ...+ .-.... .++.. +++.++++-...+.|+.++... ..
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~G-~v 373 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQG-RV 373 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTTS-EE
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCCC-cE
Confidence 998876421221 1111100 0000 001122 44443 3355555545567888887432 11
Q ss_pred cCcccccc-----ccc----------ccccEEEEEeecC-CCEEEEEeCCCcEEEEcC
Q 048511 210 DNWQPQKV-----PSG----------HFAAVMDISWSRS-SDYLLSVSHDQTTRVFAP 251 (351)
Q Consensus 210 ~~~~~~~~-----~~~----------~~~~v~~v~~sp~-~~~l~s~~~dg~i~vwd~ 251 (351)
..+.- ..+ .-.....|+++|+ +.++++-..+..|+.+++
T Consensus 374 ---~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 374 ---TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp ---EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred ---EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 00000 001 1125788999994 555555555677887765
No 295
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.58 E-value=0.0018 Score=61.25 Aligned_cols=116 Identities=9% Similarity=-0.082 Sum_probs=72.1
Q ss_pred ceEEEEecCCCCCCCCCcccCCCceeEEeec-CC----eEEEEeccCCCc-ceEEEEEeccccccccceEEEEEcCCCCE
Q 048511 116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASM-DK----TMMIWQPEKTTG-IWMNVVTVGELSHSALGFYGGHWSPDGRS 189 (351)
Q Consensus 116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~-d~----~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 189 (351)
.+....|+| |||++ ||.+.. +| +|+++|+.+ + +.+.. . .......++|+||++.
T Consensus 175 ~~~~~~~S~-----PDG~~------lAy~~~~~G~~~~~l~v~dl~~--g~~~l~~-~------~~~~~~~~~WspDg~~ 234 (751)
T 2xe4_A 175 DVMEVKPAP-----PEHDL------VAFSVDMSGNEVYTIEFKRISD--PSQTIAD-K------VSGTNGEIVWGPDHTS 234 (751)
T ss_dssp EEEEEEECT-----TTTCE------EEEEEESSSSSCEEEEEEETTC--TTCCCCC-C------EEEECSCCEECSSTTE
T ss_pred EEeeeEecC-----CCCCE------EEEEEeCCCCceEEEEEEECCC--CCEeCCc-c------ccCceeeEEEecCCCE
Confidence 577889993 37776 665433 22 599999988 4 32110 0 0111346899999998
Q ss_pred EEEEeeC-----CeEEEEEcccCcccCcccccccc-cccccEEEEEeecCCCEEEEEeC---CCcEEEEcCCCc
Q 048511 190 ILAHGYG-----GAFHLWRNVGVDIDNWQPQKVPS-GHFAAVMDISWSRSSDYLLSVSH---DQTTRVFAPWKN 254 (351)
Q Consensus 190 l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~l~s~~~---dg~i~vwd~~~~ 254 (351)
|+....+ ..|+++++.++.. .....+. ........+.|+|||++|+..+. ...|+++|+.++
T Consensus 235 l~y~~~d~~~~~~~v~~~~lgt~~~---~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 235 LFYVTKDETLRENKVWRHVMGKLQS---EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEEEECTTCCEEEEEEEETTSCGG---GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEEEEECCCCCCCEEEEEECCCCch---hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 8877765 3678888876531 1111111 12234567899999998876552 456888888765
No 296
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.57 E-value=0.027 Score=53.27 Aligned_cols=169 Identities=10% Similarity=-0.070 Sum_probs=99.6
Q ss_pred ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc-ceEEEEEeccccccccceEEEEEcCCCCEEEE
Q 048511 114 EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG-IWMNVVTVGELSHSALGFYGGHWSPDGRSILA 192 (351)
Q Consensus 114 ~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 192 (351)
...+..|+|.+ .++.+ +++-...+.|+.+++..... .....+. .........|++++.+..|+.
T Consensus 423 ~~~~~gl~~d~-----~~~~l------Y~sD~~~~~I~~~~l~g~~~~~~~~~vi----~~~l~~P~GLAvD~~~~~LY~ 487 (791)
T 3m0c_C 423 LRNVVALDTEV-----ASNRI------YWSDLSQRMICSTQLDRAHGVSSYDTVI----SRDIQAPDGLAVDWIHSNIYW 487 (791)
T ss_dssp CSSEEEEEEET-----TTTEE------EEEETTTTEEEEEEC--------CEEEE----CSSCSCCCEEEEETTTTEEEE
T ss_pred CCceEEEeecc-----cCCee------EEeeccceeEEEEeccCCCCCcceeEEE----ecCCCCcceeeeeecCCcEEE
Confidence 34577889884 34555 66666678888888874211 0111111 112234567899887765555
Q ss_pred E-eeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC--CCcEEEEcCCCccccccCccceEEecc
Q 048511 193 H-GYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH--DQTTRVFAPWKNVASLMGENSWHEVAR 269 (351)
Q Consensus 193 ~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~ 269 (351)
+ ...+.|.+.++..... ...+.........|++.|.+.+|+.... .+.|.+.++..... ..+.
T Consensus 488 tD~~~~~I~v~~ldG~~~-----~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~--------~~lv- 553 (791)
T 3m0c_C 488 TDSVLGTVSVADTKGVKR-----KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--------YSLV- 553 (791)
T ss_dssp EETTTTEEEEEETTSSSE-----EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE--------EEEE-
T ss_pred EecCCCeEEEEeCCCCeE-----EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce--------EEEE-
Confidence 4 4568999999976531 1112223345789999997666555442 26788888765431 1111
Q ss_pred ccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhce
Q 048511 270 PQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTL 313 (351)
Q Consensus 270 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 313 (351)
.......+.|++.+ .++.++++=.....|...++.|...+.+
T Consensus 554 -~~~l~~P~GLavD~-~~~~LYwaD~~~~~I~~~d~dG~~~~~v 595 (791)
T 3m0c_C 554 -TENIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNGGNRKTI 595 (791)
T ss_dssp -CSSCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred -eCCCCCceEEEEec-CCCeEEEEeCCCCcEEEEecCCCceEEE
Confidence 11223578899986 2455556656778899999887655554
No 297
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.44 E-value=0.038 Score=48.48 Aligned_cols=218 Identities=10% Similarity=0.092 Sum_probs=110.4
Q ss_pred ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCC---Cc-EEEEecCCCcccceeeccccc
Q 048511 6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQD---KV-IRIWKLALRGSSANTQSTYRK 81 (351)
Q Consensus 6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d---g~-i~iwd~~~~~~~~~~~~~~~~ 81 (351)
+.|+.++..+ +... .+.........|+++ ++++++++.... .. +...+.. .............
T Consensus 162 ~~I~~id~~~-g~v~---~~~~~~~~P~giavd--------~dG~lyVad~~~~~~~~gv~~~~~~-~~~~~~~~~~~~~ 228 (433)
T 4hw6_A 162 DAFRHVDFVN-QYVD---IKTTNIGQCADVNFT--------LNGDMVVVDDQSSDTNTGIYLFTRA-SGFTERLSLCNAR 228 (433)
T ss_dssp SCEEEEETTT-TEEE---EECCCCSCEEEEEEC--------TTCCEEEEECCSCTTSEEEEEECGG-GTTCCEEEEEECS
T ss_pred CCEEEEECCC-CEEE---EeecCCCCccEEEEC--------CCCCEEEEcCCCCcccceEEEEECC-CCeeccccccccC
Confidence 5677777766 5432 233334568899999 788855544311 12 2222222 1111101111123
Q ss_pred ceeeeEeee-cCCeEEecCCceeEEEEEec----------cccccceEEEEecCCCCCCCCCc-ccCCCceeEEeecCCe
Q 048511 82 EVISLASYI-EGPVLVAGSSSYQVSVESLL----------IGHEDWVYSVQWEPPSTAPSDGV-SCQQPSSILSASMDKT 149 (351)
Q Consensus 82 ~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~----------~~h~~~v~~l~~~p~~~~~~~~~-~~~~~~~l~s~~~d~~ 149 (351)
....+++.+ ++.++++......+..+..- .+....-..++|+ ++++ + +++-...+.
T Consensus 229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~d------pdG~~L------Yvad~~~~~ 296 (433)
T 4hw6_A 229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWH------PTGDWA------YIIYNGKHC 296 (433)
T ss_dssp SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEEC------TTSSEE------EEEETTTTE
T ss_pred CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEe------CCCCEE------EEEeCCCCE
Confidence 456677888 55555554444433322211 0111223468999 6777 4 555566788
Q ss_pred EEEEeccCCCcceE--EEEEec-ccc---------ccccceEEEEE---------cCCCCEEEEEeeCCeEEEEEcccCc
Q 048511 150 MMIWQPEKTTGIWM--NVVTVG-ELS---------HSALGFYGGHW---------SPDGRSILAHGYGGAFHLWRNVGVD 208 (351)
Q Consensus 150 i~iwd~~~~~~~~~--~~~~~~-~~~---------~~~~~i~~i~~---------~~~~~~l~~~~~dg~i~~~d~~~~~ 208 (351)
|+.++.....+... ..+.-. ... ..-.....+++ .+++.++++-...+.|+.++... .
T Consensus 297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G-~ 375 (433)
T 4hw6_A 297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEG-R 375 (433)
T ss_dssp EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTTS-E
T ss_pred EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCCC-C
Confidence 99988753212211 111100 000 01123567888 66777666666678899988532 1
Q ss_pred ccCcccccc---------------cccccccEEEEEee-cCCCEEEEEeCCCcEEEEcCC
Q 048511 209 IDNWQPQKV---------------PSGHFAAVMDISWS-RSSDYLLSVSHDQTTRVFAPW 252 (351)
Q Consensus 209 ~~~~~~~~~---------------~~~~~~~v~~v~~s-p~~~~l~s~~~dg~i~vwd~~ 252 (351)
. ..+.- ....-.....|+++ +++.++++=..+..|+.++++
T Consensus 376 v---~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 376 V---TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp E---EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred E---EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 1 00000 00112346789999 566666655567788877653
No 298
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.42 E-value=0.045 Score=46.37 Aligned_cols=145 Identities=8% Similarity=0.047 Sum_probs=78.5
Q ss_pred eEEeec--CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee-----------------CCeEEE
Q 048511 141 ILSASM--DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY-----------------GGAFHL 201 (351)
Q Consensus 141 l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-----------------dg~i~~ 201 (351)
+++-.. +.+|.+|++....+.....-... ...-.....+++.++|.+.++... .|.|..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~--g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR--HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEEC--CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccc--cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 444333 56788888876323222111111 122345788999999987776541 244544
Q ss_pred EEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe-CCCcEEEEcCCCccccccCccceEEeccccccccceeEE
Q 048511 202 WRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS-HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCV 280 (351)
Q Consensus 202 ~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (351)
+|. ++ +..+...-...+.++|+||++.|+.+. ..+.|..|++..... ....+.+ . .....-.+
T Consensus 208 ~d~--~~------~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~----l~~~~~~-~---~~g~PDGi 271 (355)
T 3sre_A 208 YSP--ND------VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT----LTPLRVL-S---FDTLVDNI 271 (355)
T ss_dssp ECT--TC------CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC----EEEEEEE-E---CSSEEEEE
T ss_pred EEC--Ce------EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCc----EecCEEE-e---CCCCCceE
Confidence 443 21 222222234568899999998876654 578999999864220 0011111 1 12345667
Q ss_pred EEeeeCC-CcEEEEecCC-CeEEEEec
Q 048511 281 TIIQGKG-NHRFVSGADE-KVARVFEA 305 (351)
Q Consensus 281 ~~~~~~~-~~~l~s~~~d-g~v~vw~~ 305 (351)
++.+ + |++.+++..+ +.|..|+.
T Consensus 272 ~vD~--e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 272 SVDP--VTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp EECT--TTCCEEEEEESCHHHHHSCCT
T ss_pred EEeC--CCCcEEEEecCCceEEEEECC
Confidence 7765 4 6666655433 34444443
No 299
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.37 E-value=0.037 Score=45.87 Aligned_cols=96 Identities=6% Similarity=0.028 Sum_probs=52.2
Q ss_pred CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-----CeEEEEEcccCcccCccccccccccc
Q 048511 148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-----GAFHLWRNVGVDIDNWQPQKVPSGHF 222 (351)
Q Consensus 148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~ 222 (351)
..+.+||+.+ ..+...-. ..........+.+ +++.++.|+.+ ..+.+||+.+.+ |..+..+....
T Consensus 169 ~~~~~yd~~~--~~W~~~~~---~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~---W~~~~~~p~~r 238 (306)
T 3ii7_A 169 NSCEVYDPAT--ETWTELCP---MIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNE---WKMVSPMPWKG 238 (306)
T ss_dssp CCEEEEETTT--TEEEEECC---CSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTE---EEECCCCSCCB
T ss_pred ceEEEeCCCC--CeEEECCC---ccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCc---EEECCCCCCCc
Confidence 4588899887 55544322 1111111222222 56677777654 468899987764 33333333222
Q ss_pred ccEEEEEeecCCCEEEEEeCC-----CcEEEEcCCCcc
Q 048511 223 AAVMDISWSRSSDYLLSVSHD-----QTTRVFAPWKNV 255 (351)
Q Consensus 223 ~~v~~v~~sp~~~~l~s~~~d-----g~i~vwd~~~~~ 255 (351)
.....+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 239 ~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 239 VTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp SCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred cceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 22222222 66777778754 468888887653
No 300
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.36 E-value=0.051 Score=45.65 Aligned_cols=161 Identities=12% Similarity=0.150 Sum_probs=93.4
Q ss_pred CCeEEEEeccCCCcceEEEEEec--cccccccceEEEEE--cCC-CC-EEEEEeeCCeEEEEEcccCcc--cCccccccc
Q 048511 147 DKTMMIWQPEKTTGIWMNVVTVG--ELSHSALGFYGGHW--SPD-GR-SILAHGYGGAFHLWRNVGVDI--DNWQPQKVP 218 (351)
Q Consensus 147 d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~i~~i~~--~~~-~~-~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~ 218 (351)
+++|.+|++....+. +..+.-. .....-..++.+|+ +|. ++ ++++...+|.+..|++..... ...+.++++
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 588999977422132 2222100 00011145677787 774 44 688888999999999943210 112445555
Q ss_pred ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccc--cccccceeEEEEeeeCCCc-EE-EEe
Q 048511 219 SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARP--QVHGHDINCVTIIQGKGNH-RF-VSG 294 (351)
Q Consensus 219 ~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~-~l-~s~ 294 (351)
.. .+.+..+...+....|+.+-++..|..++.+.... ...+.+... ......+..|++.+..++. +| +++
T Consensus 177 ~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~-----~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSs 250 (355)
T 3amr_A 177 KM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGG-----SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASS 250 (355)
T ss_dssp EC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSC-----SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEE
T ss_pred cC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCC-----CCceEEEEecCCccccCcceEEEEecCCCCEEEEEEc
Confidence 53 35788889999888999999987666666442210 011233222 1122358888886522333 44 455
Q ss_pred cCCCeEEEEecC--chhhhcee
Q 048511 295 ADEKVARVFEAP--LSFLKTLN 314 (351)
Q Consensus 295 ~~dg~v~vw~~~--~~~~~~~~ 314 (351)
-.+....|||.. .+.+.+|.
T Consensus 251 QG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 251 QGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp GGGTEEEEEESSTTCCEEEEEE
T ss_pred CCCCEEEEEECCCCCcEEEEEE
Confidence 477899999985 45555554
No 301
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.34 E-value=0.051 Score=45.32 Aligned_cols=144 Identities=11% Similarity=0.158 Sum_probs=75.2
Q ss_pred eEEeecC-------CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC------CeEEEEEcccC
Q 048511 141 ILSASMD-------KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG------GAFHLWRNVGV 207 (351)
Q Consensus 141 l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------g~i~~~d~~~~ 207 (351)
++.|+.+ ..+.+||+.+ ..+...-. .+........+. .+++.++.|+.+ ..+.+||+.+.
T Consensus 113 yv~GG~~~~~~~~~~~~~~yd~~~--~~W~~~~~---~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 185 (318)
T 2woz_A 113 YVVAGKDLQTEASLDSVLCYDPVA--AKWSEVKN---LPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKG 185 (318)
T ss_dssp EEEEEEBTTTCCEEEEEEEEETTT--TEEEEECC---CSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTT
T ss_pred EEEcCccCCCCcccceEEEEeCCC--CCEeECCC---CCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCC
Confidence 6666653 3477888887 55554322 111111111222 366666777642 45889998775
Q ss_pred cccCcccccccccccccEEEEEeecCCCEEEEEeCC-----CcEEEEcCCCccccccCccceEEeccccccccceeEEEE
Q 048511 208 DIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD-----QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTI 282 (351)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 282 (351)
. |..+..+....... +++. -++++++.|+.+ ..+.+||+.+. .|..+..+...... .+++.
T Consensus 186 ~---W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~--------~W~~~~~~p~~r~~-~~~~~ 251 (318)
T 2woz_A 186 D---WKDLAPMKTPRSMF-GVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTN--------KWEVMTEFPQERSS-ISLVS 251 (318)
T ss_dssp E---EEEECCCSSCCBSC-EEEE-ETTEEEEEEEEETTEEEEEEEEEETTTC--------CEEECCCCSSCCBS-CEEEE
T ss_pred E---EEECCCCCCCcccc-eEEE-ECCEEEEEcCcCCCCccceEEEEECCCC--------eEEECCCCCCcccc-eEEEE
Confidence 4 23332222111111 2222 256777777643 35778888665 47666544322221 22222
Q ss_pred eeeCCCcEEEEecCC--------------CeEEEEecCch
Q 048511 283 IQGKGNHRFVSGADE--------------KVARVFEAPLS 308 (351)
Q Consensus 283 ~~~~~~~~l~s~~~d--------------g~v~vw~~~~~ 308 (351)
. ++.+++.|+.+ ..+.+||+...
T Consensus 252 -~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 252 -L--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp -E--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred -E--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 2 57788888754 34778887643
No 302
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.29 E-value=0.11 Score=47.88 Aligned_cols=228 Identities=9% Similarity=-0.061 Sum_probs=122.2
Q ss_pred CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEE-EeeCCCcEEEEecCCCcccceeecccccce
Q 048511 5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLV-SSSQDKVIRIWKLALRGSSANTQSTYRKEV 83 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 83 (351)
...|+..+++. .... ...+...-.....|+|+ +.+..|+ +=...+.|..+++........
T Consensus 17 ~~~I~~i~~~~-~~~~-~~~~~~~~~~~~~ld~~--------~~~~~ly~sD~~~~~I~r~~~~g~~~~~~--------- 77 (619)
T 3s94_A 17 RRDLRLVDATN-GKEN-ATIVVGGLEDAAAVDFV--------FSHGLIYWSDVSEEAIKRTEFNKTESVQN--------- 77 (619)
T ss_dssp SSBEEEECCC-----------CBCCSCEEEEEEE--------TTTTEEEEEETTTTEEEEEEC-----CEE---------
T ss_pred cccEEEEeCCC-Ccce-EEEEEcCCCceEEEEEE--------eCCCEEEEEECCCCeEEEEEccCCCceEE---------
Confidence 45677777765 2111 11122234457788888 5444444 444456777777764321110
Q ss_pred eeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceE
Q 048511 84 ISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWM 163 (351)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 163 (351)
.+.........+++.+ ..+++ +++-...+.|.+.++.. ...
T Consensus 78 -------------------------v~~~~~~~P~GlAvD~-----~~~~l------y~~d~~~~~I~v~~~dG---~~~ 118 (619)
T 3s94_A 78 -------------------------VVVSGLLSPDGLACDW-----LGEKL------YWTDSETNRIEVSNLDG---SLR 118 (619)
T ss_dssp -------------------------EECSSCSCEEEEEEET-----TTTEE------EEEETTTTEEEEEETTS---CSC
T ss_pred -------------------------EEeCCCCCcCeEEEEe-----cCCEE------EEEeCCCCEEEEEECCC---CCE
Confidence 0111123577888883 24555 66666778999999875 222
Q ss_pred EEEEeccccccccceEEEEEcCCCCEEEEEee--CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE-
Q 048511 164 NVVTVGELSHSALGFYGGHWSPDGRSILAHGY--GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV- 240 (351)
Q Consensus 164 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~- 240 (351)
..+.. ..-.....|+++|.+..|+.+.. .+.|...++..... .......-.....|++++++..|+.+
T Consensus 119 ~~l~~----~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~-----~~l~~~~~~~P~Glald~~~~~LY~aD 189 (619)
T 3s94_A 119 KVLFW----QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-----FIIINSEIYWPNGLTLDYEEQKLYWAD 189 (619)
T ss_dssp EEEEC----SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-----EEEECSSCSSEEEEEEETTTTEEEEEE
T ss_pred EEEEe----CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-----EEEEeCCCCCCcEEEEEccCCEEEEEe
Confidence 22221 12234568999997666666553 36777777765421 11111223467899999976665544
Q ss_pred eCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhc
Q 048511 241 SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKT 312 (351)
Q Consensus 241 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~ 312 (351)
...+.|..+|+...... .+.. ........+++.. +.++++-...+.|...|.. ++....
T Consensus 190 ~~~~~I~~~~~dG~~~~--------~~~~--~~~~~P~gi~~~~---~~ly~td~~~~~V~~~d~~tg~~~~~ 249 (619)
T 3s94_A 190 AKLNFIHKSNLDGTNRQ--------AVVK--GSLPHPFALTLFE---DILYWTDWSTHSILACNKYTGEGLRE 249 (619)
T ss_dssp TTTCCEEEESSSCCEEC-------------------CCCEEESS---SEEEEECTTTCSEEEEESSSCCCCEE
T ss_pred CCCCeEEEecCCCCccE--------EEEe--CCCCCceEEEEeC---CEEEEecCCCCEEEEEECCCCcccEE
Confidence 45678999998654310 1111 1112235667755 4666676678888888864 544433
No 303
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.28 E-value=0.11 Score=47.88 Aligned_cols=226 Identities=8% Similarity=-0.102 Sum_probs=132.6
Q ss_pred CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCC-ccEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511 5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAI-SILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV 83 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 83 (351)
.+.|+..+++. ........+.+ -..+..|+|. +. +.++++-..++.|..+++.........
T Consensus 14 ~~~I~~i~l~~-~~~~~~~~~~~-~~~~~~l~~d--------~~~~~lywtD~~~~~I~r~~~~g~~~~~v~-------- 75 (628)
T 4a0p_A 14 RADIRRISLET-NNNNVAIPLTG-VKEASALDFD--------VTDNRIYWTDISLKTISRAFMNGSALEHVV-------- 75 (628)
T ss_dssp TTEEEEEESSC-TTCEEECCCCS-CSCEEEEEEE--------TTTTEEEEEETTTTEEEEEETTSCSCEEEE--------
T ss_pred CCcEEEEECCC-CCcceEEEcCC-CCceEEEEEE--------CCCCEEEEEECCCCeEEEEECCCCCcEEEE--------
Confidence 45678888876 43333222222 3467889999 54 444555556788888887643221100
Q ss_pred eeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceE
Q 048511 84 ISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWM 163 (351)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 163 (351)
.........+++.+ ..+++ +++-...+.|.+.++.. .. .
T Consensus 76 ---------------------------~~g~~~P~GlAvD~-----~~~~L------Y~tD~~~~~I~v~~~dG--~~-~ 114 (628)
T 4a0p_A 76 ---------------------------EFGLDYPEGMAVDW-----LGKNL------YWADTGTNRIEVSKLDG--QH-R 114 (628)
T ss_dssp ---------------------------CSSCSCCCEEEEET-----TTTEE------EEEETTTTEEEEEETTS--TT-C
T ss_pred ---------------------------eCCCCCcceEEEEe-----CCCEE------EEEECCCCEEEEEecCC--Cc-E
Confidence 11112355677763 34455 66666678899988874 22 2
Q ss_pred EEEEeccccccccceEEEEEcCCCCEEEEEee--CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE-
Q 048511 164 NVVTVGELSHSALGFYGGHWSPDGRSILAHGY--GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV- 240 (351)
Q Consensus 164 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~- 240 (351)
..+.. ..-.....++++|....|+.+.. .+.|...++..... ..+...-.....|++++++..|+.+
T Consensus 115 ~~l~~----~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~------~~l~~~~~~P~GlalD~~~~~LY~aD 184 (628)
T 4a0p_A 115 QVLVW----KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER------TTLVPNVGRANGLTIDYAKRRLYWTD 184 (628)
T ss_dssp EEEEC----SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------EEEECSCSSEEEEEEETTTTEEEEEE
T ss_pred EEEEe----CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce------EEEECCCCCcceEEEccccCEEEEEE
Confidence 22211 12234689999997666666553 56788888876532 2222234567899999976666555
Q ss_pred eCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec-Cchhhhce
Q 048511 241 SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA-PLSFLKTL 313 (351)
Q Consensus 241 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~-~~~~~~~~ 313 (351)
...+.|..+|+..... +.+.. .......+++.. +.++++-...+.|...|. .++....+
T Consensus 185 ~~~~~I~~~d~dG~~~--------~v~~~---~l~~P~glav~~---~~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 185 LDTNLIESSNMLGLNR--------EVIAD---DLPHPFGLTQYQ---DYIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp TTTTEEEEEETTSCSC--------EEEEE---CCSCEEEEEEET---TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCCCEEEEEcCCCCce--------EEeec---cCCCceEEEEEC---CEEEEecCCCCEEEEEECCCCCceEEE
Confidence 4567899999865431 12211 112245777754 567777777888988884 35444444
No 304
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.25 E-value=0.044 Score=46.52 Aligned_cols=139 Identities=9% Similarity=0.060 Sum_probs=65.9
Q ss_pred CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee------CCeEEEEEc--ccCcccCcccccccc
Q 048511 148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY------GGAFHLWRN--VGVDIDNWQPQKVPS 219 (351)
Q Consensus 148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~------dg~i~~~d~--~~~~~~~~~~~~~~~ 219 (351)
..+.+||+.+ ..+...-.+. .....-.+++. -+++.++.|+. ...+..||+ .+.. |..+..+.
T Consensus 168 ~~v~~yd~~~--~~W~~~~~~p---~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~---W~~~~~~~ 238 (357)
T 2uvk_A 168 KFLLSFDPST--QQWSYAGESP---WYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLK---WNKLAPVS 238 (357)
T ss_dssp CEEEEEETTT--TEEEEEEECS---SCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CE---EEECCCSS
T ss_pred ccEEEEeCCC--CcEEECCCCC---CCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCc---EEecCCCC
Confidence 5788999988 6665543211 11111012222 25666666664 345777876 4332 33333332
Q ss_pred cccccEEEEEeecCCCEEEEEeCC----------------------CcEEEEcCCCccccccCccceEEeccccccccce
Q 048511 220 GHFAAVMDISWSRSSDYLLSVSHD----------------------QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDI 277 (351)
Q Consensus 220 ~~~~~v~~v~~sp~~~~l~s~~~d----------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i 277 (351)
.........+...++++++.|+.+ ..+.+||+.+. .|..+..+......
T Consensus 239 ~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~--------~W~~~~~~p~~r~~- 309 (357)
T 2uvk_A 239 SPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG--------KWDKSGELSQGRAY- 309 (357)
T ss_dssp TTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-----------CEEEEECSSCCBS-
T ss_pred CCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCC--------ceeeCCCCCCCccc-
Confidence 111111111223356677777632 25778888755 46666544332222
Q ss_pred eEEEEeeeCCCcEEEEecCCC------eEEEEecCc
Q 048511 278 NCVTIIQGKGNHRFVSGADEK------VARVFEAPL 307 (351)
Q Consensus 278 ~~~~~~~~~~~~~l~s~~~dg------~v~vw~~~~ 307 (351)
..+... ++.+++.|+.++ .|.+++++.
T Consensus 310 -~~~~~~--~~~i~v~GG~~~~~~~~~~v~~l~~~~ 342 (357)
T 2uvk_A 310 -GVSLPW--NNSLLIIGGETAGGKAVTDSVLITVKD 342 (357)
T ss_dssp -SEEEEE--TTEEEEEEEECGGGCEEEEEEEEEC-C
T ss_pred -ceeEEe--CCEEEEEeeeCCCCCEeeeEEEEEEcC
Confidence 222333 678888888543 244456663
No 305
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.09 E-value=0.092 Score=43.31 Aligned_cols=96 Identities=9% Similarity=0.113 Sum_probs=51.5
Q ss_pred CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-----CeEEEEEcccCcccCccccccccccc
Q 048511 148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-----GAFHLWRNVGVDIDNWQPQKVPSGHF 222 (351)
Q Consensus 148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~ 222 (351)
..+.+||+.+ ..+...-. ..........+.+ +++.++.|+.+ ..+.+||+.+.+ |..+..+....
T Consensus 173 ~~~~~yd~~~--~~W~~~~~---~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~---W~~~~~~~~~r 242 (302)
T 2xn4_A 173 STVECYNATT--NEWTYIAE---MSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA---WRQVADMNMCR 242 (302)
T ss_dssp CCEEEEETTT--TEEEEECC---CSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE---EEEECCCSSCC
T ss_pred cEEEEEeCCC--CcEEECCC---CccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC---EeeCCCCCCcc
Confidence 3588889887 55554322 1111112222222 56777777764 468899987754 23332222111
Q ss_pred ccEEEEEeecCCCEEEEEeCCC-----cEEEEcCCCcc
Q 048511 223 AAVMDISWSRSSDYLLSVSHDQ-----TTRVFAPWKNV 255 (351)
Q Consensus 223 ~~v~~v~~sp~~~~l~s~~~dg-----~i~vwd~~~~~ 255 (351)
.... ++ .-++++++.|+.++ .+.+||+.+..
T Consensus 243 ~~~~-~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 243 RNAG-VC-AVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp BSCE-EE-EETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred ccCe-EE-EECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 1111 22 22667777777653 48899987653
No 306
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.07 E-value=0.052 Score=44.80 Aligned_cols=103 Identities=12% Similarity=0.182 Sum_probs=55.3
Q ss_pred eEEeecC-----CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-----CeEEEEEcccCccc
Q 048511 141 ILSASMD-----KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-----GAFHLWRNVGVDID 210 (351)
Q Consensus 141 l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~ 210 (351)
++.|+.+ ..+.+||+.+ ..+...-. ..........+.+ +++.++.|+.+ ..+.+||+.+.+
T Consensus 163 yv~GG~~~~~~~~~~~~~d~~~--~~W~~~~~---~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~-- 233 (301)
T 2vpj_A 163 YCLGGYDGLNILNSVEKYDPHT--GHWTNVTP---MATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDS-- 233 (301)
T ss_dssp EEECCBCSSCBCCCEEEEETTT--TEEEEECC---CSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE--
T ss_pred EEECCCCCCcccceEEEEeCCC--CcEEeCCC---CCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCc--
Confidence 6666543 4588889887 55544321 1111112222332 56777777764 468999998764
Q ss_pred CcccccccccccccEEEEEeecCCCEEEEEeCC-----CcEEEEcCCCcc
Q 048511 211 NWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD-----QTTRVFAPWKNV 255 (351)
Q Consensus 211 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d-----g~i~vwd~~~~~ 255 (351)
|..+..+.........+. -++++++.|+.+ ..+.+||+.+.+
T Consensus 234 -W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 234 -WTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp -EEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred -EEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 233332222211112222 266777777765 457888886653
No 307
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.06 E-value=0.29 Score=48.55 Aligned_cols=64 Identities=14% Similarity=0.025 Sum_probs=42.5
Q ss_pred CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC-CCcEEEEecCCCccc
Q 048511 5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ-DKVIRIWKLALRGSS 72 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~ 72 (351)
++.|.+++++. +++..+.... -...|.|+++.+..... ..+++++.|.. |++|+|+++.+.+.+
T Consensus 531 g~~l~~fel~~-~~L~~~~~~~-l~~evscl~i~~~~~~~--~~s~~~aVg~~~d~tv~I~sL~~l~~~ 595 (1158)
T 3ei3_A 531 GRALYYLQIHP-QELRQISHTE-MEHEVACLDITPLGDSN--GLSPLCAIGLWTDISARILKLPSFELL 595 (1158)
T ss_dssp TTEEEEEEEET-TEEEEEEEEE-CSSCEEEEECCCCSSST--TCCSEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCEEEEEEeeC-CceeeecccC-CCCceEEEEeecCCCCc--ccccEEEEEECCCCEEEEEECCCCCeE
Confidence 45677777776 5554443332 35689999998321111 34579999997 999999999865443
No 308
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.03 E-value=0.075 Score=45.77 Aligned_cols=144 Identities=15% Similarity=0.157 Sum_probs=87.7
Q ss_pred CccEEEEeeCCCcEEEEecCCCcccceeecc---cccceeeeEeeecCCeEEecCCceeE--------------------
Q 048511 48 ISILLVSSSQDKVIRIWKLALRGSSANTQST---YRKEVISLASYIEGPVLVAGSSSYQV-------------------- 104 (351)
Q Consensus 48 ~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~-------------------- 104 (351)
++..++.+- ++.||.=++.....-+.+... ....+..+..+|+|.+|++.+...-.
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~ 109 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAF 109 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccccc
Confidence 454555443 467877777744333333332 12356789999999999985432211
Q ss_pred EEEE-ecc----ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEec----cccccc
Q 048511 105 SVES-LLI----GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVG----ELSHSA 175 (351)
Q Consensus 105 ~~~~-~~~----~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~ 175 (351)
++.. .+. ....+|..+.|+|.+ ..+.. |++-..|+.|++||+........ .+... ......
T Consensus 110 q~~ty~l~~~~~~~~s~I~qVlWHPl~---~~ds~------LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~ 179 (452)
T 3pbp_A 110 QIFHYSIDEEEVGPKSSIKKVLFHPKS---YRDSC------IVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARV 179 (452)
T ss_dssp EEEEEEGGGCC--CCCCEEEEEECTTB---GGGCE------EEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSC
T ss_pred ceeEEEcCCcccCCCCceeEEEecccc---CCCCe------EEEEecCCEEEEEEcccCCCCCc-chhccccccCCCccc
Confidence 1101 010 024679999999866 44556 99999999999999986322222 22100 112233
Q ss_pred cceEEEEEcCCCCEEEEEe--eCCeEEEE
Q 048511 176 LGFYGGHWSPDGRSILAHG--YGGAFHLW 202 (351)
Q Consensus 176 ~~i~~i~~~~~~~~l~~~~--~dg~i~~~ 202 (351)
..|.+++|.+++-.|++.+ .+|.|+-.
T Consensus 180 ~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 180 NDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 6789999999887777655 77887654
No 309
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.01 E-value=0.048 Score=48.35 Aligned_cols=170 Identities=2% Similarity=-0.044 Sum_probs=95.0
Q ss_pred ceEEEEecCCCCCCCC-CcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEE-------cCCC
Q 048511 116 WVYSVQWEPPSTAPSD-GVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHW-------SPDG 187 (351)
Q Consensus 116 ~v~~l~~~p~~~~~~~-~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~-------~~~~ 187 (351)
....|+|.| .+ +++ +++-...+.|++.|+.. +.......... ........++| ++++
T Consensus 140 ~p~~la~dp-----~~~~~L------yv~~~~~~~i~~ID~~~--~~v~~l~~~~~--~~~~~p~~ia~~~~~~~~d~~G 204 (496)
T 3kya_A 140 DNGRLAFDP-----LNKDHL------YICYDGHKAIQLIDLKN--RMLSSPLNINT--IPTNRIRSIAFNKKIEGYADEA 204 (496)
T ss_dssp SEEEEEEET-----TEEEEE------EEEEETEEEEEEEETTT--TEEEEEECCTT--SSCSBEEEEEECCCBTTTBCTT
T ss_pred CCCEEEEcc-----CCCCEE------EEEECCCCeEEEEECCC--CEEEEEEccCc--cccCCCcEEEEeecccccCCCC
Confidence 356788884 12 333 44444446788888886 44443332111 12235789999 9999
Q ss_pred CEEEEEeeCC-------eEEEEEccc-CcccCccc-c--cccccccccEEEEEeecC-CCEEEEEeCCCcEEEEcCC---
Q 048511 188 RSILAHGYGG-------AFHLWRNVG-VDIDNWQP-Q--KVPSGHFAAVMDISWSRS-SDYLLSVSHDQTTRVFAPW--- 252 (351)
Q Consensus 188 ~~l~~~~~dg-------~i~~~d~~~-~~~~~~~~-~--~~~~~~~~~v~~v~~sp~-~~~l~s~~~dg~i~vwd~~--- 252 (351)
..|+++...+ .|.+++... +. +.. . ..+.. ......++++|+ +.++++-..++.|..+|+.
T Consensus 205 ~~lyvad~~~~~~~~~~~V~~i~r~~~G~---~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~ 280 (496)
T 3kya_A 205 EYMIVAIDYDGKGDESPSVYIIKRNADGT---FDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYF 280 (496)
T ss_dssp CEEEEEECCCTTGGGEEEEEEEECCTTSC---CSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHH
T ss_pred CEEEEEeCCCCCcccCceEEEEecCCCCc---eeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEeccccc
Confidence 9777776554 255665333 11 110 0 11111 123456788994 5555566678889999987
Q ss_pred ----Cccc-cc---cCccceEEeccccccccceeEEEEeeeCCCc-EEEEecCCCeEEEEecCc
Q 048511 253 ----KNVA-SL---MGENSWHEVARPQVHGHDINCVTIIQGKGNH-RFVSGADEKVARVFEAPL 307 (351)
Q Consensus 253 ----~~~~-~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~l~s~~~dg~v~vw~~~~ 307 (351)
++.. .+ ........+... ........++|+| ++. ++++-....+|+.++..+
T Consensus 281 ~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p--~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 281 KTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHP--TGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp HHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECT--TSSEEEEEETTTTEEEEEEEET
T ss_pred ccccCceeecccccccccccceeEec-CCCCCceEEEEcC--CCCEEEEEeCCCCEEEEEecCC
Confidence 4431 00 000001122111 1223467899999 887 466667788999977654
No 310
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.89 E-value=0.16 Score=42.72 Aligned_cols=106 Identities=8% Similarity=0.042 Sum_probs=68.3
Q ss_pred eEEeecCCeEEEEeccCC-----CcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccc
Q 048511 141 ILSASMDKTMMIWQPEKT-----TGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQ 215 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 215 (351)
+++...+|.+..|++... +.+.+.++.+ ...+..+...+....|+.+-.+..|..|+.+.......+.+
T Consensus 146 afV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l------gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v 219 (355)
T 3amr_A 146 AMVTGKEGEFEQYELKADKNGYISGKKVRAFKM------NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVI 219 (355)
T ss_dssp EEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC------SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEE
T ss_pred EEEECCCCeEEEEEEEeCCCCcccceEEEEecC------CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEE
Confidence 777778899999998531 1344555543 24678889999889999999997777777542211001223
Q ss_pred cccc-cc-cccEEEEEe--ecCCC-EEEEEe-CCCcEEEEcCC
Q 048511 216 KVPS-GH-FAAVMDISW--SRSSD-YLLSVS-HDQTTRVFAPW 252 (351)
Q Consensus 216 ~~~~-~~-~~~v~~v~~--sp~~~-~l~s~~-~dg~i~vwd~~ 252 (351)
..+. ++ ...+..|++ .++++ +|++++ .+.+..+||.+
T Consensus 220 ~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 220 DRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 2221 12 235777877 45555 666555 57799999996
No 311
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.82 E-value=0.3 Score=44.99 Aligned_cols=164 Identities=9% Similarity=-0.076 Sum_probs=98.9
Q ss_pred cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEE-
Q 048511 115 DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAH- 193 (351)
Q Consensus 115 ~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~- 193 (351)
..+..++|.+ .++.+ +++-..++.|..+++.. ......+. ........+++++.+..|+.+
T Consensus 37 ~~~~~l~~d~-----~~~~l------ywtD~~~~~I~r~~~~g--~~~~~v~~-----~g~~~P~GlAvD~~~~~LY~tD 98 (628)
T 4a0p_A 37 KEASALDFDV-----TDNRI------YWTDISLKTISRAFMNG--SALEHVVE-----FGLDYPEGMAVDWLGKNLYWAD 98 (628)
T ss_dssp SCEEEEEEET-----TTTEE------EEEETTTTEEEEEETTS--CSCEEEEC-----SSCSCCCEEEEETTTTEEEEEE
T ss_pred CceEEEEEEC-----CCCEE------EEEECCCCeEEEEECCC--CCcEEEEe-----CCCCCcceEEEEeCCCEEEEEE
Confidence 4577899995 45555 66666788898888875 22222121 111245678888766655544
Q ss_pred eeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe--CCCcEEEEcCCCccccccCccceEEecccc
Q 048511 194 GYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS--HDQTTRVFAPWKNVASLMGENSWHEVARPQ 271 (351)
Q Consensus 194 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 271 (351)
...+.|.+.++..... ...+...-....+|++.|....|+... ..+.|...++..... ..+..
T Consensus 99 ~~~~~I~v~~~dG~~~-----~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~--------~~l~~-- 163 (628)
T 4a0p_A 99 TGTNRIEVSKLDGQHR-----QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER--------TTLVP-- 163 (628)
T ss_dssp TTTTEEEEEETTSTTC-----EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--------EEEEC--
T ss_pred CCCCEEEEEecCCCcE-----EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce--------EEEEC--
Confidence 4568899999876421 111112334578999999655555444 256777777754431 12211
Q ss_pred ccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhce
Q 048511 272 VHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTL 313 (351)
Q Consensus 272 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 313 (351)
.......+++++ .++.++++-...+.|...++.+...+.+
T Consensus 164 -~~~~P~GlalD~-~~~~LY~aD~~~~~I~~~d~dG~~~~v~ 203 (628)
T 4a0p_A 164 -NVGRANGLTIDY-AKRRLYWTDLDTNLIESSNMLGLNREVI 203 (628)
T ss_dssp -SCSSEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred -CCCCcceEEEcc-ccCEEEEEECCCCEEEEEcCCCCceEEe
Confidence 223478899988 2345555656778999999886544433
No 312
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.77 E-value=0.18 Score=41.71 Aligned_cols=103 Identities=13% Similarity=0.150 Sum_probs=54.8
Q ss_pred eEEeecC-----CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-----CeEEEEEcccCccc
Q 048511 141 ILSASMD-----KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-----GAFHLWRNVGVDID 210 (351)
Q Consensus 141 l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~ 210 (351)
++.|+.+ ..+.+||+.+ ..+...-. ..........+.+ +++.++.|+.+ ..+.+||+.+.+
T Consensus 172 yv~GG~~~~~~~~~~~~yd~~~--~~W~~~~~---~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~-- 242 (308)
T 1zgk_A 172 YAVGGFDGTNRLNSAECYYPER--NEWRMITA---MNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET-- 242 (308)
T ss_dssp EEECCBCSSCBCCCEEEEETTT--TEEEECCC---CSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE--
T ss_pred EEEeCCCCCCcCceEEEEeCCC--CeEeeCCC---CCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc--
Confidence 5555543 4588888887 55543221 1111122222333 66777777654 568999988764
Q ss_pred CcccccccccccccEEEEEeecCCCEEEEEeCC-----CcEEEEcCCCcc
Q 048511 211 NWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD-----QTTRVFAPWKNV 255 (351)
Q Consensus 211 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d-----g~i~vwd~~~~~ 255 (351)
|..+..+........ ++. -++++++.|+.+ ..+.+||+.+.+
T Consensus 243 -W~~~~~~p~~r~~~~-~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 243 -WTFVAPMKHRRSALG-ITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp -EEECCCCSSCCBSCE-EEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred -EEECCCCCCCccceE-EEE-ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 333333322221212 222 256777777754 357888886653
No 313
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.69 E-value=0.11 Score=44.69 Aligned_cols=152 Identities=7% Similarity=-0.003 Sum_probs=89.7
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCc-----cc-
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNW-----QP- 214 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-----~~- 214 (351)
++.+ .++.||.-++.. ...-+.+..... ..-..|..+..+|+|++||..+ +..|.|..+..+..... ..
T Consensus 35 i~~a-~~n~iR~~~i~~--~~~Yk~L~~~~~-i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~ 109 (452)
T 3pbp_A 35 IVFI-QDNIIRWYNVLT--DSLYHSLNFSRH-LVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAF 109 (452)
T ss_dssp EEEE-ETTEEEEEETTT--CSSCEEEECTTT-CCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTT
T ss_pred EEEE-ECCEEEEEECCC--CCcceEEecCcc-cccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccccccc
Confidence 4444 457888888875 222223332100 0122578899999999998875 45788988863321100 00
Q ss_pred -ccccc------cccccEEEEEeecC---CCEEEEEeCCCcEEEEcCCCccccccCccceEEe-c--cccccccceeEEE
Q 048511 215 -QKVPS------GHFAAVMDISWSRS---SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEV-A--RPQVHGHDINCVT 281 (351)
Q Consensus 215 -~~~~~------~~~~~v~~v~~sp~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~--~~~~~~~~i~~~~ 281 (351)
.+.+. ....+|..+.|+|- +..|++-..|+.|++||+......+. .+... . .+......|.+++
T Consensus 110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~---~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI---VLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE---EESCCCSEEESCSSCCCEEEEE
T ss_pred ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc---chhccccccCCCcccceEEEEE
Confidence 01111 12567999999994 46789999999999999987332110 11100 0 1112225688999
Q ss_pred EeeeCCCcEEEE--ecCCCeEEE
Q 048511 282 IIQGKGNHRFVS--GADEKVARV 302 (351)
Q Consensus 282 ~~~~~~~~~l~s--~~~dg~v~v 302 (351)
|.. ++-.|.. ....|-|+-
T Consensus 187 Fg~--~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 187 FSK--DGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp ECT--TSSCEEEEECTTSCEEEE
T ss_pred EcC--CCcEEEEEecCCCCCEEE
Confidence 988 6665555 557787764
No 314
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.60 E-value=0.0049 Score=57.69 Aligned_cols=167 Identities=9% Similarity=-0.090 Sum_probs=90.0
Q ss_pred ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCC-cceEEEEEeccccccccceEEEEEcCCCC-EEEEE
Q 048511 116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTT-GIWMNVVTVGELSHSALGFYGGHWSPDGR-SILAH 193 (351)
Q Consensus 116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~ 193 (351)
.+..++|.+ ..+.+ +++-...+.|+.+++.... +.....+. .........+++.+.+. ++++-
T Consensus 407 ~p~gla~d~-----~~~~L------y~sD~~~~~I~~~~~~g~~~~~~~~~~i----~~~~~~P~glavD~~~g~LY~tD 471 (699)
T 1n7d_A 407 NVVALDTEV-----ASNRI------YWSDLSQRMICSTQLDRAHGVSSYDTVI----SRDIQAPDGLAVDWIHSNIYWTD 471 (699)
T ss_dssp TCCCCEEET-----TTTEE------EECCTTTTSBEEEESCCCCC-CCCCCBC----CSCC--CCCEECCCSSSBCEECC
T ss_pred ceEEEcccc-----ccCeE------EEEecCCCeEEEEecCCCCCCcceEEEE----eCCCCCcceEEEEeeCCcEEEEe
Confidence 355677773 23343 4444456788888876410 00000000 01111245678876444 44444
Q ss_pred eeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-C-CcEEEEcCCCccccccCccceEEecccc
Q 048511 194 GYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-D-QTTRVFAPWKNVASLMGENSWHEVARPQ 271 (351)
Q Consensus 194 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~ 271 (351)
...+.|.++++..... ...+.........|++.|.+.+|+.+.. . +.|.++++..... ..+..
T Consensus 472 ~~~~~I~v~d~dg~~~-----~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~--------~~l~~-- 536 (699)
T 1n7d_A 472 SVLGTVSVADTKGVKR-----KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--------YSLVT-- 536 (699)
T ss_dssp TTTSCEEEEBSSSCCE-----EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC--------CEESC--
T ss_pred ccCCeEEEEecCCCce-----EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe--------eEEEe--
Confidence 4568899999876421 1111212234577899986555544432 2 6788887754321 11111
Q ss_pred ccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhce
Q 048511 272 VHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTL 313 (351)
Q Consensus 272 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 313 (351)
......+.|+|++ .++.++++-+..+.|.++++.+...+.+
T Consensus 537 ~~l~~PnGlavd~-~~~~LY~aD~~~~~I~~~d~dG~~~~~~ 577 (699)
T 1n7d_A 537 ENIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNGGNRKTI 577 (699)
T ss_dssp SSCSSCCCEEECT-TTCCEEEEETTTTEEEEECSSSSCCEEE
T ss_pred CCCCCccEEEEec-cCCEEEEEecCCCeEEEEccCCCceEEE
Confidence 1123367899997 2356666777788999999876544433
No 315
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.55 E-value=0.22 Score=41.35 Aligned_cols=103 Identities=14% Similarity=0.179 Sum_probs=54.0
Q ss_pred eEEeec------CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCC-----eEEEEEcccCcc
Q 048511 141 ILSASM------DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGG-----AFHLWRNVGVDI 209 (351)
Q Consensus 141 l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~ 209 (351)
++.|+. -..+.+||+.+ ..+...-. ..........+.+ +++.++.|+.++ .+.+||+.+.+
T Consensus 152 yv~GG~~~~~~~~~~~~~yd~~~--~~W~~~~~---~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~- 223 (315)
T 4asc_A 152 YVIGGKGSDRKCLNKMCVYDPKK--FEWKELAP---MQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK- 223 (315)
T ss_dssp EEECCBCTTSCBCCCEEEEETTT--TEEEECCC---CSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE-
T ss_pred EEEeCCCCCCcccceEEEEeCCC--CeEEECCC---CCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe-
Confidence 566655 24688889887 55544222 1111111222222 667777777654 58888887754
Q ss_pred cCcccccccccccccEEEEEeecCCCEEEEEeCC--------------CcEEEEcCCCcc
Q 048511 210 DNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD--------------QTTRVFAPWKNV 255 (351)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d--------------g~i~vwd~~~~~ 255 (351)
|..+..+.........+. -++++++.|+.+ ..+.+||+.+.+
T Consensus 224 --W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 224 --WAPFEAFPQERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp --EEEECCCSSCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred --EEECCCCCCcccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 333333222222212222 256677777653 246778876653
No 316
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.50 E-value=0.23 Score=42.06 Aligned_cols=144 Identities=12% Similarity=0.049 Sum_probs=81.5
Q ss_pred cCCeEEEEeccCCCcceEEEEEecc--ccccccceEEEEEcC--CCC-EEEEEe-e--CCeEEEEEcccCcccCcccccc
Q 048511 146 MDKTMMIWQPEKTTGIWMNVVTVGE--LSHSALGFYGGHWSP--DGR-SILAHG-Y--GGAFHLWRNVGVDIDNWQPQKV 217 (351)
Q Consensus 146 ~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~i~~i~~~~--~~~-~l~~~~-~--dg~i~~~d~~~~~~~~~~~~~~ 217 (351)
.+|.|.++|+.+..... ..+.+.. ..........+.+.+ ++. +|+++. . +.+|.+|++..... ....+..
T Consensus 81 ~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~-~~~~~~~ 158 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK-SLLHLKT 158 (355)
T ss_dssp -CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTT-EEEEEEE
T ss_pred CCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCC-EEEEEec
Confidence 68999999998532332 2333222 122234566677655 453 444443 3 46888888865321 1123334
Q ss_pred cccc-cccEEEEEeecCCCEEEEEeC-----------------CCcEEEEcCCCccccccCccceEEeccccccccceeE
Q 048511 218 PSGH-FAAVMDISWSRSSDYLLSVSH-----------------DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINC 279 (351)
Q Consensus 218 ~~~~-~~~v~~v~~sp~~~~l~s~~~-----------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (351)
+.+. -...+.+.+.++|.++++... .|.|.-+|.. +. +.+. ..-...+.
T Consensus 159 ~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~--------~~~~---~~l~~pNG 225 (355)
T 3sre_A 159 IRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DV--------RVVA---EGFDFANG 225 (355)
T ss_dssp ECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CC--------EEEE---EEESSEEE
T ss_pred cccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eE--------EEee---cCCcccCc
Confidence 4332 235789999999987776541 2445555542 20 1111 11123688
Q ss_pred EEEeeeCCCcEE-EEecCCCeEEEEecC
Q 048511 280 VTIIQGKGNHRF-VSGADEKVARVFEAP 306 (351)
Q Consensus 280 ~~~~~~~~~~~l-~s~~~dg~v~vw~~~ 306 (351)
++|+| |++.| ++-+..+.|..|++.
T Consensus 226 ia~sp--Dg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 226 INISP--DGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp EEECT--TSSEEEEEEGGGTEEEEEEEC
T ss_pred ceECC--CCCEEEEEeCCCCeEEEEEEC
Confidence 99999 77655 455577899999975
No 317
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.49 E-value=0.26 Score=46.10 Aligned_cols=113 Identities=11% Similarity=0.133 Sum_probs=58.9
Q ss_pred eEEeecCC--eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCC-CCEEEEEee--C-----CeEEEEEcccCcc-
Q 048511 141 ILSASMDK--TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD-GRSILAHGY--G-----GAFHLWRNVGVDI- 209 (351)
Q Consensus 141 l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~--d-----g~i~~~d~~~~~~- 209 (351)
++.|+.++ .+.+||+.+ ..+...-..............+.+..+ ++.++.|+. + ..+.+||+.+..-
T Consensus 504 yv~GG~~~~~~v~~yd~~t--~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~ 581 (695)
T 2zwa_A 504 LILGGVTEGPAMLLYNVTE--EIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENAT 581 (695)
T ss_dssp EEECCBCSSCSEEEEETTT--TEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSS
T ss_pred EEECCCCCCCCEEEEECCC--CceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccc
Confidence 77777654 689999988 666543221111112222233555555 667777765 2 4688999987641
Q ss_pred --cCcccccccccccccEEEEEeecCCCEEEEEeC--------CCcEEEEcCCCcc
Q 048511 210 --DNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH--------DQTTRVFAPWKNV 255 (351)
Q Consensus 210 --~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~--------dg~i~vwd~~~~~ 255 (351)
..|..+.........-.+++...++++++.|+. ...+.+||+.+..
T Consensus 582 ~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 582 EPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp CCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred cceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 001111111001111112333333677777774 3468999987664
No 318
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.42 E-value=0.32 Score=40.34 Aligned_cols=204 Identities=10% Similarity=0.092 Sum_probs=118.4
Q ss_pred CCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCC
Q 048511 47 AISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPS 126 (351)
Q Consensus 47 ~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 126 (351)
|..+.+|-=. ..++.++|+++...+.... ....|.-=.|-
T Consensus 76 P~~~ViALra-g~~LQiFnletK~klks~~------------------------------------~~e~VvfWkWi--- 115 (365)
T 2xzh_A 76 PASKVIALKA-GKTLQIFNIEMKSKMKAHT------------------------------------MTDDVTFWKWI--- 115 (365)
T ss_dssp SSSSEEEEEE-TTEEEEEETTTTEEEEEEE------------------------------------CSSCEEEEEEC---
T ss_pred CCccEEEEec-CCeEEEechHHhhhhccee------------------------------------cCCccEEEEec---
Confidence 5566666554 6789999998876654433 12345555565
Q ss_pred CCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee-------CCeE
Q 048511 127 TAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY-------GGAF 199 (351)
Q Consensus 127 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-------dg~i 199 (351)
.+. . |+-.. +..|.-|++.. +..+.+.+.....- ....|..-..+++.++++..+- .|.+
T Consensus 116 ---s~~-~------L~lVT-~taVyHWs~~~-~s~P~kvFdR~~~L-~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~m 182 (365)
T 2xzh_A 116 ---SLN-T------VALVT-DNAVYHWSMEG-ESQPVKMFDRHSSL-AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAM 182 (365)
T ss_dssp ---SSS-E------EEEEE-SSEEEEEESST-TCCCEEEEECCGGG-TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEE
T ss_pred ---CCC-e------EEEEc-CCcEEEEcccC-CCCCceeeecchhc-ccceEEEEEECCCCCEEEEEeEeccCCccceeE
Confidence 222 2 44443 45699999875 23445555432221 2456888888999998876553 3778
Q ss_pred EEEEcccCcccCcccccccccccccEEEEEeecC---CCEEEEEeC---CCcEEEEcCCCc-ccccc-CccceEEecccc
Q 048511 200 HLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS---SDYLLSVSH---DQTTRVFAPWKN-VASLM-GENSWHEVARPQ 271 (351)
Q Consensus 200 ~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~---~~~l~s~~~---dg~i~vwd~~~~-~~~~~-~~~~~~~~~~~~ 271 (351)
.+|..+.+ ..+.+++|...-..+.+.-+ ..+|+.+.. .+.++|-++... ..... ..+.......+.
T Consensus 183 QLYS~er~------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppe 256 (365)
T 2xzh_A 183 QLYSVDRK------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE 256 (365)
T ss_dssp EEEETTTT------EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTT
T ss_pred EEEeeccc------ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCcc
Confidence 89988774 35667777655433333211 123333322 258888888543 11110 011111111122
Q ss_pred ccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhh
Q 048511 272 VHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLK 311 (351)
Q Consensus 272 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~ 311 (351)
....-.-++..++ ....+..-..-|.|++||+. +.++.
T Consensus 257 a~~DFPVamqvs~--kygviyviTK~G~ihlyDleTgt~i~ 295 (365)
T 2xzh_A 257 AQNDFPVAMQISE--KHDVVFLITKYGYIHLYDLETGTCIY 295 (365)
T ss_dssp CTTCCEEEEEEET--TTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred ccCCceEEEEecc--cCCEEEEEeCCcEEEEEEcccCcEEE
Confidence 2233356788887 77888888999999999987 55443
No 319
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.24 E-value=0.41 Score=39.72 Aligned_cols=223 Identities=9% Similarity=-0.023 Sum_probs=125.7
Q ss_pred CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc----cc
Q 048511 5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST----YR 80 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~----~~ 80 (351)
..+++|||+++ + ..+..+.- ...|.-=.|. +.+.|+-.+ +..|.-|++............ ..
T Consensus 86 g~~LQiFnlet-K--~klks~~~-~e~VvfWkWi---------s~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~ 151 (365)
T 2xzh_A 86 GKTLQIFNIEM-K--SKMKAHTM-TDDVTFWKWI---------SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAG 151 (365)
T ss_dssp TTEEEEEETTT-T--EEEEEEEC-SSCEEEEEEC---------SSSEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTT
T ss_pred CCeEEEechHH-h--hhhcceec-CCccEEEEec---------CCCeEEEEc-CCcEEEEcccCCCCCceeeecchhccc
Confidence 35799999998 5 23333332 3567777776 234555554 457999999764333222211 14
Q ss_pred cceeeeEeeecCCeEEecC-------CceeEEEE-------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec
Q 048511 81 KEVISLASYIEGPVLVAGS-------SSYQVSVE-------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM 146 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~-------~~~~~~~~-------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~ 146 (351)
..+.....+++.+.++..+ -.+.+++. +.+.||...-..+...-+. ....+ |+-+..
T Consensus 152 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~---~~~~l------f~fa~r 222 (365)
T 2xzh_A 152 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNA---EESTL------FCFAVR 222 (365)
T ss_dssp CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCS---SCEEE------EEEEEE
T ss_pred ceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeeeeeeeeEEEecCCCC---CCceE------EEEEEe
Confidence 5566666777777666532 12333332 3466675544444333111 12222 444433
Q ss_pred C---CeEEEEeccCC-Ccce---EEEEEecc-ccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccc
Q 048511 147 D---KTMMIWQPEKT-TGIW---MNVVTVGE-LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP 218 (351)
Q Consensus 147 d---~~i~iwd~~~~-~~~~---~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 218 (351)
. +.++|-++... .+.. .+...+.. .........++..++....++.-+.-|.|++||++++ .++..-
T Consensus 223 ~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTg-----t~i~~n 297 (365)
T 2xzh_A 223 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG-----TCIYMN 297 (365)
T ss_dssp ETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC-----CEEEEE
T ss_pred cCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccC-----cEEEEe
Confidence 2 58999998542 1211 11122111 1223445667888888889999999999999999998 456555
Q ss_pred ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511 219 SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 219 ~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
+-....|..-+......=++.....|.|.--.+....
T Consensus 298 rIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 298 RISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp ECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred ccCCCceEEecccCCCCcEEEEcCCCEEEEEEECccc
Confidence 5455566555555444445555577777666555443
No 320
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.12 E-value=0.13 Score=40.06 Aligned_cols=144 Identities=10% Similarity=0.000 Sum_probs=80.1
Q ss_pred eEEeecCCeEEEEeccCCCc-ceE-EEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccc
Q 048511 141 ILSASMDKTMMIWQPEKTTG-IWM-NVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP 218 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~-~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 218 (351)
|.....| +++.=....... .+. ...++... .-..+..++|+|++.+.++ .+|.++-.+..+.... ..
T Consensus 7 l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~--gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~------~W 75 (236)
T 1tl2_A 7 LRGVYQD-KFYQGTYPQNKNDNWLARATLIGKG--GWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDND------NW 75 (236)
T ss_dssp EEEEETT-EEEEESCCCSTTCCHHHHSEEEESS--SCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC------CH
T ss_pred EEEEeCC-cEEecCCCCCcccchhhhccccCcc--ccccceeEEECCCccEEEE--eCCeEEEECCCCCCcc------cc
Confidence 7777777 655544444111 010 11121110 0235779999998886666 7887666665443211 11
Q ss_pred ccccccE--------EEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccc--cccceeEEEEeeeCCC
Q 048511 219 SGHFAAV--------MDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQV--HGHDINCVTIIQGKGN 288 (351)
Q Consensus 219 ~~~~~~v--------~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~ 288 (351)
.+....| .++.|.|+|.+.++ .||.|+-++..+.. ...|.--....+ -=..+..|.+.| +|
T Consensus 76 ~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~-----~~~Wl~~a~~vg~~gw~~~~~lff~p--~G 146 (236)
T 1tl2_A 76 MGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSD-----TDNWIARATEVGSGGWSGFKFLFFHP--NG 146 (236)
T ss_dssp HHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCST-----TCCHHHHSEEEECSSGGGEEEEEECT--TS
T ss_pred cccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCC-----CCceeccccEeccCCCCceEEEEECC--Cc
Confidence 1112233 78899999987777 56999888864433 123311111100 113478999999 88
Q ss_pred cEEEEecCCCeEEEEecC
Q 048511 289 HRFVSGADEKVARVFEAP 306 (351)
Q Consensus 289 ~~l~s~~~dg~v~vw~~~ 306 (351)
.+.+.. |+.++-+..+
T Consensus 147 ~Lyav~--dg~lyr~~~P 162 (236)
T 1tl2_A 147 YLYAVH--GQQFYKALPP 162 (236)
T ss_dssp CEEEEE--TTEEEEECCC
T ss_pred eEEEEe--CCcEEecCCC
Confidence 777776 7775444433
No 321
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.12 E-value=1.2 Score=44.10 Aligned_cols=142 Identities=14% Similarity=0.217 Sum_probs=84.7
Q ss_pred eEEee----------cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc
Q 048511 141 ILSAS----------MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID 210 (351)
Q Consensus 141 l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 210 (351)
|+.|. ..|.|++|++.. ++.. .+.. ....+.+++++-- +| +|++ +....|++|++...+
T Consensus 847 lvVGTa~~~~~e~~~~~Gri~vf~v~~--~kL~-lv~~---~~v~g~v~al~~~-~g-~Lla-~ig~~l~vy~l~~~~-- 915 (1158)
T 3ei3_A 847 FIVGTAMVYPEEAEPKQGRIVVFQYSD--GKLQ-TVAE---KEVKGAVYSMVEF-NG-KLLA-SINSTVRLYEWTTEK-- 915 (1158)
T ss_dssp EEEEEEECCTTCSSCCCEEEEEEEEET--TEEE-EEEE---EEESSCEEEEEEE-TT-EEEE-EETTEEEEEEECTTS--
T ss_pred EEEEeeecCCCCCCCCceEEEEEEEEC--CEEE-EEEE---EEcCCcCEEEeee-CC-EEEE-EcCCEEEEEECCCCc--
Confidence 77775 347899999974 3222 1111 1235678887643 34 4443 346889999997642
Q ss_pred CcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcE
Q 048511 211 NWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHR 290 (351)
Q Consensus 211 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 290 (351)
.+..-..+-..|..+.....+.+++.|..-..|.++..+... ..+..+.+- .....++++.+.. ...
T Consensus 916 ---~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~------~~L~~~a~D-~~~~~vta~~~ld---~~t 982 (1158)
T 3ei3_A 916 ---ELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPME------GNFEEIARD-FNPNWMSAVEILD---DDN 982 (1158)
T ss_dssp ---CEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTT------TEEEEEEEC-CSCBCEEEEEEEE---TTE
T ss_pred ---eEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCC------CeEEEEEee-cccccEEEEEEEc---cCc
Confidence 122100111123333333457789999888888777654332 233444433 3345688999886 457
Q ss_pred EEEecCCCeEEEEecC
Q 048511 291 FVSGADEKVARVFEAP 306 (351)
Q Consensus 291 l~s~~~dg~v~vw~~~ 306 (351)
++.+..+|.+.+...+
T Consensus 983 ~l~aD~~gNl~vl~~~ 998 (1158)
T 3ei3_A 983 FLGAENAFNLFVCQKD 998 (1158)
T ss_dssp EEEEETTSEEEEEEEC
T ss_pred EEEEcCCCcEEEEecC
Confidence 8889999999998765
No 322
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.81 E-value=0.84 Score=39.56 Aligned_cols=223 Identities=9% Similarity=-0.023 Sum_probs=127.0
Q ss_pred CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc----cc
Q 048511 5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST----YR 80 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~----~~ 80 (351)
..++.|||+++ + ..+..+.- ...|.-=.|. +.+.|+-.+ +..|.-|++............ ..
T Consensus 85 g~~lQiFnle~-K--~klks~~~-~e~VvfWkWi---------s~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~ 150 (494)
T 1bpo_A 85 GKTLQIFNIEM-K--SKMKAHTM-TDDVTFWKWI---------SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAG 150 (494)
T ss_dssp TTEEEEEETTT-T--EEEEEEEC-SSCCCEEEEE---------ETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTT
T ss_pred CCeEEEEchHH-h--hhhcceec-CCCceEEEec---------CCCeEEEEc-CCeeEEecccCCCCchhheecchhccc
Confidence 46789999998 5 23333332 3456667776 234555554 457999999754333222211 14
Q ss_pred cceeeeEeeecCCeEEecC-------CceeEEEE-------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec
Q 048511 81 KEVISLASYIEGPVLVAGS-------SSYQVSVE-------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM 146 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~-------~~~~~~~~-------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~ 146 (351)
..+.....+++.+.++..+ -.+.+.+. +.+.||...-..+...-+. ....+ ++-+..
T Consensus 151 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~---~~~~l------f~fa~r 221 (494)
T 1bpo_A 151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNA---EESTL------FCFAVR 221 (494)
T ss_dssp CEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCS---SEEEE------EEEEEC
T ss_pred ceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCC---CCceE------EEEEEe
Confidence 5566666777777666532 12333332 3466776555444443111 11222 444444
Q ss_pred C---CeEEEEeccCC-Ccce---EEEEEeccc-cccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccc
Q 048511 147 D---KTMMIWQPEKT-TGIW---MNVVTVGEL-SHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP 218 (351)
Q Consensus 147 d---~~i~iwd~~~~-~~~~---~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 218 (351)
. +.++|-++... .+.. .+...+... ........++..++....++.-+.-|.|++||++++ .++..-
T Consensus 222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg-----t~i~~n 296 (494)
T 1bpo_A 222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG-----TCIYMN 296 (494)
T ss_dssp STTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC-----CEEEEE
T ss_pred cCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc-----eeeeee
Confidence 2 78999998642 1111 112222111 223445567888888889999999999999999998 455554
Q ss_pred ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511 219 SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV 255 (351)
Q Consensus 219 ~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~ 255 (351)
+-....|..-+......=++.....|.|.--.+....
T Consensus 297 rIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 297 RISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp ECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred cccCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 4455566555555544445555577777666655443
No 323
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.77 E-value=0.16 Score=43.07 Aligned_cols=110 Identities=11% Similarity=0.104 Sum_probs=61.6
Q ss_pred ceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccc---ccccccccEEEEEeecC---CCEEEEE-eCC-----C
Q 048511 177 GFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQK---VPSGHFAAVMDISWSRS---SDYLLSV-SHD-----Q 244 (351)
Q Consensus 177 ~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---~~~~~~~~v~~v~~sp~---~~~l~s~-~~d-----g 244 (351)
....++|.|+|+ |+++..++.|++++ .++. ..+. ...........|+|+|+ +..|+.+ ..+ .
T Consensus 32 ~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~---~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 32 VPWALAFLPDGG-MLIAERPGRIRLFR--EGRL---STYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CEEEEEECTTSC-EEEEETTTEEEEEE--TTEE---EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CceEEEEcCCCe-EEEEeCCCeEEEEE--CCCc---cEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 467899999998 45556679999998 3321 1111 11122456789999998 4454443 322 6
Q ss_pred cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEec
Q 048511 245 TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGA 295 (351)
Q Consensus 245 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~ 295 (351)
.|..|+........ ....+..+.......+....++|.| ++.++++-+
T Consensus 106 ~v~r~~~~~~~~~~-~~~l~~~~p~~~~~~h~~~~l~~~p--dG~Lyv~~G 153 (352)
T 2ism_A 106 QVVRLRHLGERGVL-DRVVLDGIPARPHGLHSGGRIAFGP--DGMLYVTTG 153 (352)
T ss_dssp EEEEEEECSSCEEE-EEEEEEEECCCTTCCCCCCCEEECT--TSCEEEECC
T ss_pred EEEEEEeCCCCcCc-eEEEEEeCCCCCCCCcCCceEEECC--CCCEEEEEC
Confidence 78888876432100 0001111111011122357899999 888777754
No 324
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.52 E-value=0.64 Score=36.21 Aligned_cols=143 Identities=15% Similarity=0.150 Sum_probs=75.4
Q ss_pred ceeeeEeeecCCeEEecCCceeEEEEEecc-------ccccce--------EEEEecCCCCCCCCCcccCCCceeEEeec
Q 048511 82 EVISLASYIEGPVLVAGSSSYQVSVESLLI-------GHEDWV--------YSVQWEPPSTAPSDGVSCQQPSSILSASM 146 (351)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~h~~~v--------~~l~~~p~~~~~~~~~~~~~~~~l~s~~~ 146 (351)
....++|+|+|.+.++ ..+.+....... +-...| .++.|. +++.+ .++ .
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD------~~G~L------Yav--~ 105 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFD------PNGYL------YAV--S 105 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEEC------TTSCE------EEE--E
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEEC------CCCCE------EEe--C
Confidence 5668999999998777 444333222211 111223 577888 67776 665 6
Q ss_pred CCeEEEEeccCC-CcceEEE-EEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc--ccc
Q 048511 147 DKTMMIWQPEKT-TGIWMNV-VTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS--GHF 222 (351)
Q Consensus 147 d~~i~iwd~~~~-~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--~~~ 222 (351)
||.|.-++..+. ...++.. -.+. ..--..+..+.+.|+|.+.++. |+.++-....+.....+....+.. ..-
T Consensus 106 dG~iyr~~pP~~~~~~Wl~~a~~vg--~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~ 181 (236)
T 1tl2_A 106 KDKLYKASPPQSDTDNWIARATEVG--SGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGW 181 (236)
T ss_dssp TTEEEEESCCCSTTCCHHHHSEEEE--CSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSG
T ss_pred CCEEEEeCCCcCCCCceeccccEec--cCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCc
Confidence 799887776431 1112111 0100 0122457899999999977766 777543322211110010011111 112
Q ss_pred ccEEEEEeecCCCEEEEEeCCCcE
Q 048511 223 AAVMDISWSRSSDYLLSVSHDQTT 246 (351)
Q Consensus 223 ~~v~~v~~sp~~~~l~s~~~dg~i 246 (351)
...+-+.|.+++.+.+.. ++.+
T Consensus 182 ~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 182 DTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp GGEEEEEECTTSCEEEEE--TTEE
T ss_pred ceEEEEEECCCCcEEEEe--CCeE
Confidence 234456789998876655 6633
No 325
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.39 E-value=1.6 Score=40.08 Aligned_cols=155 Identities=5% Similarity=-0.102 Sum_probs=88.1
Q ss_pred ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee
Q 048511 116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY 195 (351)
Q Consensus 116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 195 (351)
....+++.+ ..+++ +++-+..+.|.+.++.. .....+.. ..-.....++++|....|+.+..
T Consensus 393 ~p~GlAvD~-----~~~~l------Y~tD~~~~~I~v~~~~G---~~~~~l~~----~~l~~P~~iavdp~~G~ly~tD~ 454 (619)
T 3s94_A 393 HPDGIAVDW-----VARNL------YWTDTGTDRIEVTRLNG---TMRKILIS----EDLEEPRAIVLDPMVGYMYWTDW 454 (619)
T ss_dssp CCCEEEEET-----TTTEE------EEEETTTTEEEEEETTS---CSCEEEEC----TTCCSEEEEEEETTTTEEEEEEC
T ss_pred CcCceEEec-----ccCcE------EEEeCCCCcEEEEeCCC---CeEEEEEE----CCCCCeeeEEEEcCCCcEEEecC
Confidence 455677763 24555 66666678898888875 22222221 22345789999997555555543
Q ss_pred --CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe-CCCcEEEEcCCCccccccCccceEEeccccc
Q 048511 196 --GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS-HDQTTRVFAPWKNVASLMGENSWHEVARPQV 272 (351)
Q Consensus 196 --dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 272 (351)
...|...++..... .......-...+.|++++++..|+.+. ..+.|..+++..... +. .+.....
T Consensus 455 g~~~~I~r~~~dG~~~-----~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~-----~~--~~~~~l~ 522 (619)
T 3s94_A 455 GEIPKIERAALDGSDR-----VVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGR-----RV--LVEDKIP 522 (619)
T ss_dssp SSSCEEEEEETTSCSC-----EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-----EE--EEECCCC
T ss_pred CCCCEEEEEccCCCcc-----EEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCce-----EE--EeccCCC
Confidence 36777777765421 111122335678999998766666554 457888888854431 11 1111111
Q ss_pred cccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 273 HGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 273 ~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
| ...+++.. +.++++-...+.|...+..
T Consensus 523 ~---P~glav~~---~~ly~tD~~~~~I~~~~k~ 550 (619)
T 3s94_A 523 H---IFGFTLLG---DYVYWTDWQRRSIERVHKR 550 (619)
T ss_dssp S---SCCEEEET---TEEEEECTTSSCEEEEESS
T ss_pred C---cEEEEEEC---CEEEEeecCCCeEEEEEcC
Confidence 2 34566654 4566666666666666643
No 326
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.39 E-value=1.3 Score=38.94 Aligned_cols=114 Identities=13% Similarity=0.138 Sum_probs=62.5
Q ss_pred cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccc---ccccceEEEEEcCC---CC
Q 048511 115 DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELS---HSALGFYGGHWSPD---GR 188 (351)
Q Consensus 115 ~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~i~~i~~~~~---~~ 188 (351)
...+.|+|. +++++ +++-...+.|++++... +.......+.... ........|+|+|+ +.
T Consensus 27 ~~P~~~a~~------pdG~l------~V~e~~gg~I~~~~~~~--g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g 92 (454)
T 1cru_A 27 NKPHALLWG------PDNQI------WLTERATGKILRVNPES--GSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNP 92 (454)
T ss_dssp SSEEEEEEC------TTSCE------EEEETTTCEEEEECTTT--CCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSC
T ss_pred CCceEEEEc------CCCcE------EEEEcCCCEEEEEECCC--CcEeEEecCCccccccCCCCceeEEEECCCcCcCC
Confidence 356799999 78876 66654445788887654 3322222222111 12456789999996 55
Q ss_pred EEEEEee-------------CCeEEEEEcccCc--ccCccccc-ccc-cccccEEEEEeecCCCEEEEEeC
Q 048511 189 SILAHGY-------------GGAFHLWRNVGVD--IDNWQPQK-VPS-GHFAAVMDISWSRSSDYLLSVSH 242 (351)
Q Consensus 189 ~l~~~~~-------------dg~i~~~d~~~~~--~~~~~~~~-~~~-~~~~~v~~v~~sp~~~~l~s~~~ 242 (351)
.|+++.. ...|.-|+..... ....+.+. .+. ........|+|.|+|.++++.+.
T Consensus 93 ~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 93 YIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp EEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred EEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 5555443 2356666554321 00001111 111 11224688999999988776543
No 327
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.38 E-value=1.2 Score=38.58 Aligned_cols=160 Identities=9% Similarity=0.048 Sum_probs=94.0
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee-------CCeEEEEEcccCcccCcc
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY-------GGAFHLWRNVGVDIDNWQ 213 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-------dg~i~~~d~~~~~~~~~~ 213 (351)
|+-.+ +..|+-|++.. +..+.+.+.....- ....|..-..+++.++++..+- .|.+.+|..+.+
T Consensus 119 l~lVT-~taVyHWsi~~-~s~P~kvFdR~~~L-~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~------ 189 (494)
T 1bpo_A 119 VALVT-DNAVYHWSMEG-ESQPVKMFDRHSSL-AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK------ 189 (494)
T ss_dssp EEEEC-SSEEEEEESSS-SCCCEEEEECCGGG-TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC------
T ss_pred EEEEc-CCeeEEecccC-CCCchhheecchhc-ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc------
Confidence 44433 45699999875 23445555432221 2456888888999998876552 478889988774
Q ss_pred cccccccccccEEEEEeecC---CCEEEEEeC---CCcEEEEcCCCc-ccccc-CccceEEeccccccccceeEEEEeee
Q 048511 214 PQKVPSGHFAAVMDISWSRS---SDYLLSVSH---DQTTRVFAPWKN-VASLM-GENSWHEVARPQVHGHDINCVTIIQG 285 (351)
Q Consensus 214 ~~~~~~~~~~~v~~v~~sp~---~~~l~s~~~---dg~i~vwd~~~~-~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~ 285 (351)
..+.+++|...-..+.+.-+ ..+++.+.. .+.++|-++... ..... ..+.......+.....-.-++..++
T Consensus 190 ~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~- 268 (494)
T 1bpo_A 190 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE- 268 (494)
T ss_dssp CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-
T ss_pred ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-
Confidence 35677788665544443221 123444433 278899888543 11110 0011111111122233356788888
Q ss_pred CCCcEEEEecCCCeEEEEecC-chhhh
Q 048511 286 KGNHRFVSGADEKVARVFEAP-LSFLK 311 (351)
Q Consensus 286 ~~~~~l~s~~~dg~v~vw~~~-~~~~~ 311 (351)
....+..-..-|.|++||+. +.++.
T Consensus 269 -kygviyviTK~G~i~lyDleTgt~i~ 294 (494)
T 1bpo_A 269 -KHDVVFLITKYGYIHLYDLETGTCIY 294 (494)
T ss_dssp -TTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred -cCCEEEEEecCceEEEEecccceeee
Confidence 77888889999999999987 55443
No 328
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.22 E-value=1.1 Score=37.07 Aligned_cols=102 Identities=12% Similarity=0.188 Sum_probs=53.1
Q ss_pred eEEeec------CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-----CeEEEEEcccCcc
Q 048511 141 ILSASM------DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-----GAFHLWRNVGVDI 209 (351)
Q Consensus 141 l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~ 209 (351)
++.|+. -..+.+||+.+ ..+...-. ..........+.+ +++.++.|+.+ ..+.+||+.+.+
T Consensus 162 yv~GG~~~~~~~~~~~~~yd~~~--~~W~~~~~---~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~- 233 (318)
T 2woz_A 162 YCLGGKTDDKKCTNRVFIYNPKK--GDWKDLAP---MKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK- 233 (318)
T ss_dssp EEECCEESSSCBCCCEEEEETTT--TEEEEECC---CSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC-
T ss_pred EEEcCCCCCCCccceEEEEcCCC--CEEEECCC---CCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe-
Confidence 555553 23588899887 65554322 1111111222222 56777777653 357788887754
Q ss_pred cCcccccccccccccEEEEEeecCCCEEEEEeCC--------------CcEEEEcCCCc
Q 048511 210 DNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD--------------QTTRVFAPWKN 254 (351)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d--------------g~i~vwd~~~~ 254 (351)
|..+..+....... +++ .-++++++.|+.+ ..+.+||+.+.
T Consensus 234 --W~~~~~~p~~r~~~-~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 234 --WEVMTEFPQERSSI-SLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp --EEECCCCSSCCBSC-EEE-EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred --EEECCCCCCcccce-EEE-EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 33333332222211 222 2356677777653 35778887665
No 329
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.07 E-value=0.38 Score=40.80 Aligned_cols=110 Identities=10% Similarity=-0.001 Sum_probs=61.1
Q ss_pred ceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccc---cccccccEEEEEeecC---CCEE-EEEeC---C---
Q 048511 177 GFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKV---PSGHFAAVMDISWSRS---SDYL-LSVSH---D--- 243 (351)
Q Consensus 177 ~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~---~~~~~~~v~~v~~sp~---~~~l-~s~~~---d--- 243 (351)
....++|.|+++ |+++..++.|++++. .+. ..+.. ..........|+++|+ +..| ++-+. +
T Consensus 30 ~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~----~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 30 VPWSIAPLGGGR-YLVTERPGRLVLISP-SGK----KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp CEEEEEEEETTE-EEEEETTTEEEEECS-SCE----EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCc----eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 467899999998 555566799999873 221 11111 1122346889999997 4444 43332 3
Q ss_pred -CcEEEEcCCCccccccCcc-ceEEeccccccccceeEEEEeeeCCCcEEEEecC
Q 048511 244 -QTTRVFAPWKNVASLMGEN-SWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD 296 (351)
Q Consensus 244 -g~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~ 296 (351)
..|..|+............ .+..+.....| ....++|.| |+.++++-++
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h--~~~~l~~~p--DG~Lyvt~G~ 154 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIH--NGGRIRFGP--DGMLYITTGD 154 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSC--CCCCEEECT--TSCEEEECCC
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCc--CCceEEECC--CCcEEEEECC
Confidence 5677777654410000000 01111111122 357899999 8888777543
No 330
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.05 E-value=0.5 Score=40.00 Aligned_cols=124 Identities=12% Similarity=0.081 Sum_probs=67.5
Q ss_pred ceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccc----cccccccEEEEEeecC---CCEE-EEEeC------
Q 048511 177 GFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKV----PSGHFAAVMDISWSRS---SDYL-LSVSH------ 242 (351)
Q Consensus 177 ~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~----~~~~~~~v~~v~~sp~---~~~l-~s~~~------ 242 (351)
..+.++|.|+++.|+++...|.|++++...... ..+.. ..........|+++|+ +..| ++-+.
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~---~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLS---APLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEEC---CCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCcee---eEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 467899999998455566789999998543211 11111 1122346789999995 4444 43322
Q ss_pred -CCcEEEEcCCCccccccCccceEEe-cccc---ccccceeEEEEeeeCCCcEEEEecCC-------------CeEEEEe
Q 048511 243 -DQTTRVFAPWKNVASLMGENSWHEV-ARPQ---VHGHDINCVTIIQGKGNHRFVSGADE-------------KVARVFE 304 (351)
Q Consensus 243 -dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~---~~~~~i~~~~~~~~~~~~~l~s~~~d-------------g~v~vw~ 304 (351)
...|..|++....... ...+.+ ..+. ...+....++|.| |+.++++-++. |.|.-++
T Consensus 96 ~~~~v~r~~~~~~~~~~---~~~~~i~~~~p~~~~~~h~~~~l~~~p--dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~ 170 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKV---TDFRTVFRQMPKLSTGNHFGGRLVFDG--KGYLFIALGENNQRPTAQDLDKLQGKLVRLT 170 (353)
T ss_dssp EEEEEEEEEECTTSSBE---EEEEEEEECSSCCBSSSCCCCCEEECS--SSEEEEEECCTTCGGGGGCTTSCTTEEEEEE
T ss_pred ceeEEEEEEECCCCCCC---CceEEEEEECCCCCCCcccCccEEECC--CCcEEEEECCCCCCCccCCCCCCCeEEEEEC
Confidence 2356666654331100 011111 1111 1122356799999 88777775442 4566666
Q ss_pred cCch
Q 048511 305 APLS 308 (351)
Q Consensus 305 ~~~~ 308 (351)
..+.
T Consensus 171 ~dG~ 174 (353)
T 2g8s_A 171 DQGE 174 (353)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 6553
No 331
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.56 E-value=1.1 Score=37.77 Aligned_cols=53 Identities=11% Similarity=-0.053 Sum_probs=26.2
Q ss_pred eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCC------eEEEEEcccCc
Q 048511 149 TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGG------AFHLWRNVGVD 208 (351)
Q Consensus 149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg------~i~~~d~~~~~ 208 (351)
.+.+||+.+ ..+...-.+ ........++ ..+++.++.|+.++ .+.++++++++
T Consensus 286 ~~~~yd~~~--~~W~~~~~~---p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 286 STDIHLWHN--GKWDKSGEL---SQGRAYGVSL--PWNNSLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp CCEEEECC-----CEEEEEC---SSCCBSSEEE--EETTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred eEEEEecCC--CceeeCCCC---CCCcccceeE--EeCCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 477889887 555543221 1111112222 23677788888652 35566777654
No 332
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.51 E-value=1.8 Score=40.38 Aligned_cols=153 Identities=8% Similarity=0.017 Sum_probs=82.2
Q ss_pred eEEeecC----CeEEEEeccCCCcceEEEE-Ee--ccccccccceEEEEEcCCCCEEEEEeeC------CeEEEEEcccC
Q 048511 141 ILSASMD----KTMMIWQPEKTTGIWMNVV-TV--GELSHSALGFYGGHWSPDGRSILAHGYG------GAFHLWRNVGV 207 (351)
Q Consensus 141 l~s~~~d----~~i~iwd~~~~~~~~~~~~-~~--~~~~~~~~~i~~i~~~~~~~~l~~~~~d------g~i~~~d~~~~ 207 (351)
++.|+.+ ..+.+||+.+ ..+...- .. .........-..+.+..+++.++.|+.+ ..+.+||+.+.
T Consensus 401 yv~GG~~~~~~~~v~~yd~~~--~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~ 478 (695)
T 2zwa_A 401 FYMGGSNPYRVNEILQLSIHY--DKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTR 478 (695)
T ss_dssp EEECCBSSSBCCCEEEEEECS--SCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTT
T ss_pred EEECCCCCCCcCcEEEEECCC--CeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCC
Confidence 6667643 4688899888 6665433 10 0111111222233332267777777754 35788888775
Q ss_pred cccCcccccccccccccEEEEEeecCCCEEEEEeCCC--cEEEEcCCCccccccCccceEEecc---ccccccceeEEEE
Q 048511 208 DIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQ--TTRVFAPWKNVASLMGENSWHEVAR---PQVHGHDINCVTI 282 (351)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~ 282 (351)
. |..+..+...... .+++...++++++.|+.++ .+.+||..+. .|..+.. .......-.++.+
T Consensus 479 ~---W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~--------~W~~~~~~g~~p~~r~~~~a~v~ 546 (695)
T 2zwa_A 479 E---WSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEE--------IFKDVTPKDEFFQNSLVSAGLEF 546 (695)
T ss_dssp E---EEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTT--------EEEECCCSSGGGGSCCBSCEEEE
T ss_pred c---EEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCC--------ceEEccCCCCCCCcccceeEEEE
Confidence 4 3333333222211 1223324778888887654 6899998765 4666653 1111122233444
Q ss_pred eeeCCCcEEEEecC--C-----CeEEEEecCch
Q 048511 283 IQGKGNHRFVSGAD--E-----KVARVFEAPLS 308 (351)
Q Consensus 283 ~~~~~~~~l~s~~~--d-----g~v~vw~~~~~ 308 (351)
.. .++.+++.||. + ..+.+||+...
T Consensus 547 ~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 547 DP-VSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp ET-TTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred eC-CCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 44 12667788875 2 35888887643
No 333
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.26 E-value=0.9 Score=38.09 Aligned_cols=115 Identities=9% Similarity=0.028 Sum_probs=65.1
Q ss_pred ccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCC
Q 048511 49 SILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTA 128 (351)
Q Consensus 49 ~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ 128 (351)
+.+++.++.||.|.-.|..+++........ ...++.... .|...
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~----------------------------------~~~p~~~~~-~~~~~- 53 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPE----------------------------------NFQPLIEIQ-EPSRL- 53 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGG----------------------------------GSCCSEECC-CSCTT-
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCC----------------------------------ccCCcEEec-CCccc-
Confidence 458888999999999999988776655421 001111110 00000
Q ss_pred CCCCcccCCCceeEEe-ecCCeEEEEeccCCCcceEEEEEeccccccccceEE---EEE-c----CCCCEEEEEeeCCeE
Q 048511 129 PSDGVSCQQPSSILSA-SMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYG---GHW-S----PDGRSILAHGYGGAF 199 (351)
Q Consensus 129 ~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~---i~~-~----~~~~~l~~~~~dg~i 199 (351)
.++.. ++.. +.||.|..++..+ |.....+.+..+. ...++.. ... . ..+..+++++.+|.+
T Consensus 54 -~~~~~------~vv~p~~dG~l~a~~~~~--G~~~~~~~~~~lv-~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l 123 (339)
T 2be1_A 54 -ETYET------LIIEPFGDGNIYYFNAHQ--GLQKLPLSIRQLV-STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIM 123 (339)
T ss_dssp -TSSEE------EEECCSTTTEEEEEETTT--EEEEEEEEHHHHH-TTCSEEEECC----------CCEEEEECEEEEEE
T ss_pred -cCCcE------EEEEECCCCEEEEEECCC--CcEEeeeccccce-eccccccCCCceeecccccccCCEEEEEecCCEE
Confidence 12233 4443 6899999999887 6444444322211 1112221 000 0 145678999999999
Q ss_pred EEEEcccCcc
Q 048511 200 HLWRNVGVDI 209 (351)
Q Consensus 200 ~~~d~~~~~~ 209 (351)
...|+++++.
T Consensus 124 ~ald~~tG~~ 133 (339)
T 2be1_A 124 YTINMLNGEI 133 (339)
T ss_dssp EEEETTTCCE
T ss_pred EEEECCCCcE
Confidence 9999999853
No 334
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.18 E-value=4.1 Score=41.13 Aligned_cols=220 Identities=10% Similarity=-0.020 Sum_probs=112.2
Q ss_pred CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc----cc
Q 048511 5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST----YR 80 (351)
Q Consensus 5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~----~~ 80 (351)
..+++|||+++ +. .+..+.- ...|.-=.|. +.+.|+-.+ +..|.-|++............ ..
T Consensus 85 g~~lQiFnl~~-k~--klks~~~-~e~VvfWkWi---------s~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~ 150 (1630)
T 1xi4_A 85 GKTLQIFNIEM-KS--KMKAHTM-TDDVTFWKWI---------SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAG 150 (1630)
T ss_pred CCeEEEeehHH-hh--hhccccc-CCCceEEEec---------CCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhccc
Confidence 35678888877 32 1222221 2356566665 233454444 457999999753322222111 14
Q ss_pred cceeeeEeeecCCeEEecC-------CceeEEEEE-------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeec
Q 048511 81 KEVISLASYIEGPVLVAGS-------SSYQVSVES-------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM 146 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~-------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~ 146 (351)
..+.....+++.+.++..+ -.|.+.+.+ .+.||...-..+...-.. ....+ ++.+..
T Consensus 151 ~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~---~~~~l------~~f~~~ 221 (1630)
T 1xi4_A 151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNA---EESTL------FCFAVR 221 (1630)
T ss_pred CeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCC---CCceE------EEEEEe
Confidence 5566667777777666522 223333332 355665544444332111 12222 443332
Q ss_pred ---CCeEEEEeccCC-CcceE---EEEEeccc-cccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccc
Q 048511 147 ---DKTMMIWQPEKT-TGIWM---NVVTVGEL-SHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP 218 (351)
Q Consensus 147 ---d~~i~iwd~~~~-~~~~~---~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 218 (351)
.+.++|-++... .+... +...+... ........++..++....++.-+.-|.|++||+.++ .++..-
T Consensus 222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~-----~~i~~~ 296 (1630)
T 1xi4_A 222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG-----TCIYMN 296 (1630)
T ss_pred cCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccc-----hhhhhc
Confidence 368999988652 11111 11111111 122333456777888888888999999999999998 445444
Q ss_pred ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCC
Q 048511 219 SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPW 252 (351)
Q Consensus 219 ~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~ 252 (351)
+-....|...+......-++.....|.|.--.+.
T Consensus 297 ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~ 330 (1630)
T 1xi4_A 297 RISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (1630)
T ss_pred cccCCceEEeccCCCCCceEEEcCCceEEEEEEc
Confidence 3344444444433322223333455555444443
No 335
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.41 E-value=3.1 Score=34.99 Aligned_cols=41 Identities=17% Similarity=-0.065 Sum_probs=28.8
Q ss_pred EEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCC
Q 048511 21 RACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALR 69 (351)
Q Consensus 21 ~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~ 69 (351)
.+..+...-..-+.|+|. ++++++++--..|.|++++...+
T Consensus 23 ~~~~va~gL~~P~~ia~~--------pdG~llVter~~G~I~~v~~~~g 63 (347)
T 3das_A 23 VLRTVATGLNSPWGLAPL--------PGGDLLVSSRDEATITRVDAKTG 63 (347)
T ss_dssp EEEEEECCCSSEEEEEEC--------TTSCEEEEETTTCEEEEECTTTC
T ss_pred eeEEeecCCCCceEEEEc--------CCCcEEEEEecCCEEEEEECCCC
Confidence 344444445567899999 88887776655899988876543
No 336
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.30 E-value=3.2 Score=34.87 Aligned_cols=117 Identities=11% Similarity=-0.002 Sum_probs=65.3
Q ss_pred cccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecc-ccccccceEEEEEcCC---
Q 048511 111 IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGE-LSHSALGFYGGHWSPD--- 186 (351)
Q Consensus 111 ~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~i~~i~~~~~--- 186 (351)
...-...+.|+|. +++.+ +++--..|.|++++... +.......+.. ..........|+++|+
T Consensus 28 a~gL~~P~~ia~~------pdG~l------lVter~~G~I~~v~~~~--g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~ 93 (347)
T 3das_A 28 ATGLNSPWGLAPL------PGGDL------LVSSRDEATITRVDAKT--GRKTELGEVPGVSPSGEGGLLGIALSPDYAS 93 (347)
T ss_dssp ECCCSSEEEEEEC------TTSCE------EEEETTTCEEEEECTTT--CCEEEEEECTTCCCBTTBSEEEEEECTTHHH
T ss_pred ecCCCCceEEEEc------CCCcE------EEEEecCCEEEEEECCC--CcEeeecccCceeecCCCCceeeEecccccc
Confidence 3334567899999 78876 66665589999998655 33221111111 1123456889999995
Q ss_pred CCEEEEEe---eCCeEEEEEcccCc-----ccCcccc-cccc-cccccEEEEEeecCCCEEEEEe
Q 048511 187 GRSILAHG---YGGAFHLWRNVGVD-----IDNWQPQ-KVPS-GHFAAVMDISWSRSSDYLLSVS 241 (351)
Q Consensus 187 ~~~l~~~~---~dg~i~~~d~~~~~-----~~~~~~~-~~~~-~~~~~v~~v~~sp~~~~l~s~~ 241 (351)
+..|++.. .++.|.-|.+.... ....+.+ ..+. ........|.|.|+|.++++.+
T Consensus 94 ~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 94 DHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp HCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred CCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 44454432 34566666665421 1111111 1111 1112345699999998777654
No 337
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.22 E-value=3.5 Score=41.57 Aligned_cols=160 Identities=9% Similarity=0.047 Sum_probs=87.8
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-------eCCeEEEEEcccCcccCcc
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-------YGGAFHLWRNVGVDIDNWQ 213 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-------~dg~i~~~d~~~~~~~~~~ 213 (351)
|+-.+ +..|.-|++.. +..+.+.+..... -....|..-..+++.++++..+ ..|.+.+|..+.+
T Consensus 119 l~lVT-~~aVyHW~~~~-~s~P~k~fdR~~~-L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~------ 189 (1630)
T 1xi4_A 119 VALVT-DNAVYHWSMEG-ESQPVKMFDRHSS-LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK------ 189 (1630)
T ss_pred eEEEc-CCeEEEeccCC-CCccHHHHhcchh-cccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc------
Confidence 44433 34699999964 1233332221111 1135677778889999887655 3488999988774
Q ss_pred cccccccccccEEEEEee--cC-CCEEEEEeC---CCcEEEEcCCCc-ccccc-CccceEEeccccccccceeEEEEeee
Q 048511 214 PQKVPSGHFAAVMDISWS--RS-SDYLLSVSH---DQTTRVFAPWKN-VASLM-GENSWHEVARPQVHGHDINCVTIIQG 285 (351)
Q Consensus 214 ~~~~~~~~~~~v~~v~~s--p~-~~~l~s~~~---dg~i~vwd~~~~-~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~ 285 (351)
..+.+.||.+.-..+... +. ...++.+.. .+.++|-++... ..... ..+.......+.....-..++..++
T Consensus 190 ~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~- 268 (1630)
T 1xi4_A 190 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE- 268 (1630)
T ss_pred cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecc-
Confidence 355666776544333332 11 223332222 268888888543 11110 0010001111111222355777887
Q ss_pred CCCcEEEEecCCCeEEEEecC-chhhh
Q 048511 286 KGNHRFVSGADEKVARVFEAP-LSFLK 311 (351)
Q Consensus 286 ~~~~~l~s~~~dg~v~vw~~~-~~~~~ 311 (351)
....+...+.-|.|+++|+. +.++.
T Consensus 269 -k~g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 269 -KHDVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred -ccCEEEEEecCceEEEEecccchhhh
Confidence 67788888899999999987 55443
No 338
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=92.78 E-value=3.9 Score=34.44 Aligned_cols=69 Identities=12% Similarity=0.060 Sum_probs=40.0
Q ss_pred ccEEEEEeec-------CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEec
Q 048511 223 AAVMDISWSR-------SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGA 295 (351)
Q Consensus 223 ~~v~~v~~sp-------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~ 295 (351)
..+..+.|.. ++.++++.-..+.|...++..+.. ......+......+..+++.| ||.++++..
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~~rp~~v~~~p--dG~lyv~td 341 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKV-------TEDGRILTDRGQRIRDVRTGP--DGYLYVLTD 341 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEE-------EEEEEESGGGCCCEEEEEECT--TSCEEEEEC
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeE-------eeeEEcccCCCCceeEEEECC--CCcEEEEEe
Confidence 3567788764 466666666677787777764321 111111112234588999998 888776533
Q ss_pred -CCCeE
Q 048511 296 -DEKVA 300 (351)
Q Consensus 296 -~dg~v 300 (351)
.+|.|
T Consensus 342 ~~~g~I 347 (353)
T 2g8s_A 342 ESSGEL 347 (353)
T ss_dssp STTEEE
T ss_pred CCCCEE
Confidence 45543
No 339
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=92.13 E-value=2.9 Score=36.76 Aligned_cols=119 Identities=12% Similarity=0.105 Sum_probs=63.3
Q ss_pred ceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcc-cCcccccc-cc-----cccccEEEEEeecC----CCEEEEEeC--
Q 048511 177 GFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDI-DNWQPQKV-PS-----GHFAAVMDISWSRS----SDYLLSVSH-- 242 (351)
Q Consensus 177 ~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~-~~-----~~~~~v~~v~~sp~----~~~l~s~~~-- 242 (351)
..+.|+|.|++. .|+++...|.|++++...... ..+.-+.. +. ........|+|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 457899999996 566677899999997543211 00010111 11 11456889999996 444443332
Q ss_pred C----------CcEEEEcCCCcc---ccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCC
Q 048511 243 D----------QTTRVFAPWKNV---ASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEK 298 (351)
Q Consensus 243 d----------g~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg 298 (351)
+ ..|.-|.+.... ......+.+..+.. ....+....|+|.| |+.+.++.++.+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~-~~~~H~g~~l~fgp--DG~LYv~~Gd~~ 160 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAE-LHRKHLGGQLLFGP--DGFLYIILGDGM 160 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEE-SSSSSCEEEEEECT--TSCEEEEECCTT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCC-CCCcccCCcEeECC--CCcEEEEeCCCC
Confidence 1 134445554321 00000111112211 12223468899999 888888777654
No 340
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=91.86 E-value=6.2 Score=34.62 Aligned_cols=32 Identities=6% Similarity=-0.085 Sum_probs=22.1
Q ss_pred CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCC
Q 048511 29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLAL 68 (351)
Q Consensus 29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~ 68 (351)
-...+.|+|. ++++++++-...+.|++++..+
T Consensus 26 l~~P~~~a~~--------pdG~l~V~e~~gg~I~~~~~~~ 57 (454)
T 1cru_A 26 LNKPHALLWG--------PDNQIWLTERATGKILRVNPES 57 (454)
T ss_dssp CSSEEEEEEC--------TTSCEEEEETTTCEEEEECTTT
T ss_pred CCCceEEEEc--------CCCcEEEEEcCCCEEEEEECCC
Confidence 3456799999 8888777654434687776543
No 341
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=91.75 E-value=5.3 Score=33.61 Aligned_cols=28 Identities=7% Similarity=0.071 Sum_probs=20.2
Q ss_pred ceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 276 DINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 276 ~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
....++|. ++.++++.-..+.|...+++
T Consensus 269 ap~G~~~~---~G~l~v~~~~~~~v~~v~~~ 296 (352)
T 2ism_A 269 PPGNLAFF---RGDLYVAGLRGQALLRLVLE 296 (352)
T ss_dssp CEEEEEEE---TTEEEEEETTTTEEEEEEEE
T ss_pred CCcceEEE---CCEEEEEECCCCEEEEEEEC
Confidence 35677773 57777777777888877765
No 342
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=91.53 E-value=9.2 Score=35.97 Aligned_cols=232 Identities=7% Similarity=0.006 Sum_probs=113.1
Q ss_pred CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEE
Q 048511 29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES 108 (351)
Q Consensus 29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 108 (351)
...|++|.-. .+| +|-.|..+| +..||-................+.++....+|.+.+ +...+.. ...
T Consensus 21 ~n~V~~I~qD--------~~G-~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gT~~Gl~-~yd 88 (758)
T 3ott_A 21 ASVVSCFLQD--------SEG-LIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTYLYM-GTDNGIL-VYN 88 (758)
T ss_dssp CCCEEEEEEC--------TTS-CEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTTEEEE-EETTEEE-EEE
T ss_pred cceEEEEEEC--------CCC-CEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCCcEEE-EeCCCeE-EEe
Confidence 4578888877 555 455566777 445664322111101111123455655555554444 3333322 111
Q ss_pred e----c----cccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEE
Q 048511 109 L----L----IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYG 180 (351)
Q Consensus 109 ~----~----~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~ 180 (351)
. + ......|.++... ++. |..++.+ -+..+|..+ +... .+...........|.+
T Consensus 89 ~~~~~f~~~~~~~~~~i~~i~~~-------~g~-------lWigt~~-Gl~~~~~~~--~~~~-~~~~~~~~l~~~~i~~ 150 (758)
T 3ott_A 89 YRADRYEQPETDFPTDVRTMALQ-------GDT-------LWLGALN-GLYTYQLQS--RKLT-SFDTRRNGLPNNTIYS 150 (758)
T ss_dssp TTTTEECCCSCCCCSCEEEEEEE-------TTE-------EEEEETT-EEEEEETTT--CCEE-EECHHHHCCSCSCEEE
T ss_pred CCCCEEECcccCCCceEEEEEec-------CCc-------EEEEcCC-cceeEeCCC--CeEE-EeccCCCCcCCCeEEE
Confidence 1 0 0112235555432 333 5555555 577888765 3322 2210001112346888
Q ss_pred EEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccC
Q 048511 181 GHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMG 260 (351)
Q Consensus 181 i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 260 (351)
+....++.+.+ ++. +-|..|+..+.....+............|.++...+++..|..|+. +-+..+|..+..
T Consensus 151 i~~d~~g~lWi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~----- 222 (758)
T 3ott_A 151 IIRTKDNQIYV-GTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQ----- 222 (758)
T ss_dssp EEECTTCCEEE-EET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTE-----
T ss_pred EEEcCCCCEEE-EeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCe-----
Confidence 88887777554 444 4577888766432100000000001234888888777665444553 458888876654
Q ss_pred ccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511 261 ENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 261 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 307 (351)
+.....+ ....|.++.... ++.+.+. +.+| +.+++...
T Consensus 223 ---~~~~~~l--~~~~i~~i~~d~--~g~lWig-T~~G-l~~~~~~~ 260 (758)
T 3ott_A 223 ---IKQTEAF--HNNSIKSLALDG--NGDLLAG-TDNG-LYVYHNDT 260 (758)
T ss_dssp ---EEEEEEE--EEEEEEEEEECT--TCCEEEE-ETTE-EEEECCTT
T ss_pred ---EEeccCC--CCCeEEEEEEcC--CCCEEEE-eCCc-eeEEecCC
Confidence 1111111 223477777665 5555443 3444 66777653
No 343
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=89.95 E-value=8 Score=32.56 Aligned_cols=65 Identities=11% Similarity=-0.063 Sum_probs=39.2
Q ss_pred ccEEEEEee-------cCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEec
Q 048511 223 AAVMDISWS-------RSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGA 295 (351)
Q Consensus 223 ~~v~~v~~s-------p~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~ 295 (351)
.....++|. .+|.++++.-..+.|...++...... .....+ +......+..+++.| |+.++++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~----~~~~~~--~~~~~~rp~~v~~~p--DG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEV----RKISTF--FKNVFGRLRDVVIDD--DGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCE----EEEEEE--CTTTSCCEEEEEECT--TSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcc----cceeee--ccCCCCCeeEEEECC--CCcEEEEEe
Confidence 356788883 46777776666778888887653210 001111 112234588999998 887777664
No 344
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=89.28 E-value=9.4 Score=32.48 Aligned_cols=155 Identities=12% Similarity=0.061 Sum_probs=86.3
Q ss_pred CeEEEEeccCCCc--ceEEEEEecc-ccccccceEEEEEc---CC----CCEEEEEe-eCCeEEEEEcccCcccCcc---
Q 048511 148 KTMMIWQPEKTTG--IWMNVVTVGE-LSHSALGFYGGHWS---PD----GRSILAHG-YGGAFHLWRNVGVDIDNWQ--- 213 (351)
Q Consensus 148 ~~i~iwd~~~~~~--~~~~~~~~~~-~~~~~~~i~~i~~~---~~----~~~l~~~~-~dg~i~~~d~~~~~~~~~~--- 213 (351)
-.|.+||+.+ . +.++++.+.. .......+..+++. |. +.+++.+. ....|.+||+.+++.....
T Consensus 123 pkLv~~DL~t--~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~ 200 (381)
T 3q6k_A 123 PAIVAYDLKQ--PNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT 200 (381)
T ss_dssp CEEEEEESSS--TTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG
T ss_pred ceEEEEECCC--CCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC
Confidence 3688999999 6 7888777632 22334567888887 22 34555554 4678999999876431110
Q ss_pred --cc----cccccc----cccEEEEEeecC----CCEEEEEeCCCcEEEEcCCCccccccC-ccceEEecccccccccee
Q 048511 214 --PQ----KVPSGH----FAAVMDISWSRS----SDYLLSVSHDQTTRVFAPWKNVASLMG-ENSWHEVARPQVHGHDIN 278 (351)
Q Consensus 214 --~~----~~~~~~----~~~v~~v~~sp~----~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~i~ 278 (351)
+- ..+.+. ...|..|+++|+ ++.|.-....+ -++|.+.+.-..... ...++.+... +....-.
T Consensus 201 ~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~k-g~~s~~~ 278 (381)
T 3q6k_A 201 FKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNR-GKYNDAI 278 (381)
T ss_dssp GSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEEC-CTTCCEE
T ss_pred CccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeec-CCCCCcc
Confidence 00 000111 236888999997 67776655443 245544322111000 0122222211 1112223
Q ss_pred EEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511 279 CVTIIQGKGNHRFVSGADEKVARVFEAPL 307 (351)
Q Consensus 279 ~~~~~~~~~~~~l~s~~~dg~v~vw~~~~ 307 (351)
.+++.+ .+|.++++--+...|..|+..+
T Consensus 279 ~~~~D~-~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 279 ALAYDP-KTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEEECT-TTCEEEEEESSSSEEEEEETTS
T ss_pred eEEEeC-CCCeEEEEeccCCeEEEEeCCC
Confidence 455542 2688888888999999999876
No 345
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=86.91 E-value=5.1 Score=36.00 Aligned_cols=75 Identities=12% Similarity=0.070 Sum_probs=49.9
Q ss_pred EEEEEcCCCCEEEEEe-eCCeEEEEEcccCcc----cCccc----ccccccccccEEEEEeecCCCEEEEEeCCCcEEEE
Q 048511 179 YGGHWSPDGRSILAHG-YGGAFHLWRNVGVDI----DNWQP----QKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249 (351)
Q Consensus 179 ~~i~~~~~~~~l~~~~-~dg~i~~~d~~~~~~----~~~~~----~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vw 249 (351)
..+.++|||+++++++ .+.++.++|++.-.. +...+ +.... -.-...-.+|.++|....|---|..|.-|
T Consensus 326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvkW 404 (638)
T 3sbq_A 326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVKW 404 (638)
T ss_dssp CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEEE
T ss_pred cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEEE
Confidence 4678899999988877 578999999974211 00011 11222 12345678999999555566679999999
Q ss_pred cCCCc
Q 048511 250 APWKN 254 (351)
Q Consensus 250 d~~~~ 254 (351)
++...
T Consensus 405 ni~~a 409 (638)
T 3sbq_A 405 NMEEA 409 (638)
T ss_dssp EHHHH
T ss_pred eccHH
Confidence 98653
No 346
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=82.18 E-value=31 Score=33.50 Aligned_cols=40 Identities=10% Similarity=0.120 Sum_probs=31.6
Q ss_pred ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEec
Q 048511 116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVG 169 (351)
Q Consensus 116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 169 (351)
.+.++... ++..+ +++-+.|+++|+|++.+ +.++.+..+.
T Consensus 237 ~~~~~~~~------~~~~~------lftl~~D~~LRiWsl~t--~~~v~t~dL~ 276 (950)
T 4gq2_M 237 TIISMIFL------STYNV------LVMLSLDYKLKVLDLST--NQCVETIELS 276 (950)
T ss_dssp CEEEEEEE------TTTTE------EEEEETTCEEEEEETTT--TEEEEEEECC
T ss_pred eEEEEeec------CCCcE------EEEEECCCEEEEEECCC--CCeEeeeccc
Confidence 45666666 56667 99999999999999999 8887776543
No 347
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=82.17 E-value=33 Score=32.14 Aligned_cols=264 Identities=10% Similarity=0.038 Sum_probs=128.2
Q ss_pred eEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceee------cccc
Q 048511 7 KIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQ------STYR 80 (351)
Q Consensus 7 ~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~------~~~~ 80 (351)
-|..++..+ +++.....+. ...|.++... .++.+.+ |+.+| +.+++..+........ ....
T Consensus 212 Gl~~~~~~~-~~~~~~~~l~--~~~i~~i~~d--------~~g~lWi-gT~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~ 278 (758)
T 3ott_A 212 YLFQYFPST-GQIKQTEAFH--NNSIKSLALD--------GNGDLLA-GTDNG-LYVYHNDTTPLQHIIHDSRNIQSLTN 278 (758)
T ss_dssp EEEEEETTT-TEEEEEEEEE--EEEEEEEEEC--------TTCCEEE-EETTE-EEEECCTTSCCEEECCCTTCTTSCSC
T ss_pred CCeEEcCCC-CeEEeccCCC--CCeEEEEEEc--------CCCCEEE-EeCCc-eeEEecCCCcEEEEEcCCCCcCcCCc
Confidence 456667665 5444333332 2357777776 5565554 44444 7777776543211110 0112
Q ss_pred cceeeeEeeecCCeEEecCCceeEEEEE------ec-------cccccceEEEEecCCCCCCCCCcccCCCceeEEeecC
Q 048511 81 KEVISLASYIEGPVLVAGSSSYQVSVES------LL-------IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD 147 (351)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~-------~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d 147 (351)
..+.++....+|.+.+.... + +.... .+ ......|.++... .++. |..|+.+
T Consensus 279 ~~i~~i~~D~~g~lWiGT~~-G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D------~~g~-------lWiGt~~ 343 (758)
T 3ott_A 279 NIIWNIFADQEHNIWLGTDY-G-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRD------SKGF-------YWFGGAN 343 (758)
T ss_dssp SCEEEEEECTTCCEEEEESS-S-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEEC------TTCC-------EEEEETT
T ss_pred CeEEEEEEcCCCCEEEEeCC-c-ccccccCCceeEEecccCCCCCCCceEEEEEEc------CCCC-------EEEeeCC
Confidence 34556666666666554432 2 11110 00 0112357777766 5555 4555555
Q ss_pred CeEEEEeccCCCcceEEEEEecc--ccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc-ccccc
Q 048511 148 KTMMIWQPEKTTGIWMNVVTVGE--LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS-GHFAA 224 (351)
Q Consensus 148 ~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-~~~~~ 224 (351)
| +..++..+........+.... ..-....|.++.-..++++ ..|+ ++-|..||..+++...+....... .....
T Consensus 344 G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (758)
T 3ott_A 344 G-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQL-WIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNW 420 (758)
T ss_dssp E-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCE-EEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSS
T ss_pred c-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCE-EEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCce
Confidence 4 666665541111111121100 0012245888888887764 4455 457999998775421111000000 02345
Q ss_pred EEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceE---Eecccc-ccccceeEEEEeeeCCCcEEE-EecCCCe
Q 048511 225 VMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWH---EVARPQ-VHGHDINCVTIIQGKGNHRFV-SGADEKV 299 (351)
Q Consensus 225 v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~~-~~~~~i~~~~~~~~~~~~~l~-s~~~dg~ 299 (351)
|.++...+++.+. .|+..+-|.++|........ ...+. ...... .....|.++...+ ++.+.+ .+..+|
T Consensus 421 v~~i~~d~~g~lW-igT~~~Gl~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~i~~i~~d~--~g~lWi~~~t~~G- 494 (758)
T 3ott_A 421 TYYIFEDTAGQLW-ISTCLGGIFVVDKHKLMQST--SGQYIAEQNYSVHNGLSGMFINQIIPDN--EGNVWVLLYNNKG- 494 (758)
T ss_dssp EEEEEECTTSEEE-EEESSSCEEEEEHHHHHHCC--SSEEECSEEECGGGTCSCSCEEEEEECT--TSCEEEEETTCSS-
T ss_pred EEEEEEcCCCCEE-EEECCCceEEEccccccccC--CcceecccccccccccccceeeeEEEcC--CCCEEEEccCCCC-
Confidence 8888877777644 46666678888854210000 00010 111111 1223477887766 677665 344555
Q ss_pred EEEEecCc
Q 048511 300 ARVFEAPL 307 (351)
Q Consensus 300 v~vw~~~~ 307 (351)
|..+|...
T Consensus 495 l~~~d~~~ 502 (758)
T 3ott_A 495 IDKINPRT 502 (758)
T ss_dssp EEEEETTT
T ss_pred cEEEeCCC
Confidence 66677653
No 348
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=80.47 E-value=29 Score=30.41 Aligned_cols=117 Identities=7% Similarity=-0.057 Sum_probs=59.8
Q ss_pred cceEEEEecCCCCCCCCCc-ccCCCceeEEeecCCeEEEEeccCCC-cceEEEEEecccc----ccccceEEEEEcCC--
Q 048511 115 DWVYSVQWEPPSTAPSDGV-SCQQPSSILSASMDKTMMIWQPEKTT-GIWMNVVTVGELS----HSALGFYGGHWSPD-- 186 (351)
Q Consensus 115 ~~v~~l~~~p~~~~~~~~~-~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~----~~~~~i~~i~~~~~-- 186 (351)
...+.|+|. +++. . |+++...|.|++++..... ...+..+...... ........|+|+|+
T Consensus 14 ~~P~~~a~~------pdG~~r------l~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~ 81 (463)
T 2wg3_C 14 RQPVGALHS------GDGSQR------LFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYK 81 (463)
T ss_dssp SSEEEEECC------SSSSCC------EEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHH
T ss_pred CCceEEEEC------CCCCeE------EEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCc
Confidence 346789999 6775 4 5566788999999754210 0111111100000 12456889999996
Q ss_pred -CCEEEEE-eeC------------CeEEEEEcccCcc-----cCcccccccc--cccccEEEEEeecCCCEEEEEeCC
Q 048511 187 -GRSILAH-GYG------------GAFHLWRNVGVDI-----DNWQPQKVPS--GHFAAVMDISWSRSSDYLLSVSHD 243 (351)
Q Consensus 187 -~~~l~~~-~~d------------g~i~~~d~~~~~~-----~~~~~~~~~~--~~~~~v~~v~~sp~~~~l~s~~~d 243 (351)
..+|++. +.+ ..|.-|.+..... ...+.+..+. ........|.|.|||.+.++.+..
T Consensus 82 ~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 82 KNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp HHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 2334333 221 1444455543210 0011121111 112245789999999877766543
No 349
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=79.97 E-value=4.3 Score=33.95 Aligned_cols=115 Identities=10% Similarity=0.080 Sum_probs=61.6
Q ss_pred CEEEEEeeCCeEEEEEcccCcccCcccccccccc-cccEEEEEe--e-cCCCEEEEE-eCCCcEEEEcCCCccccccCcc
Q 048511 188 RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH-FAAVMDISW--S-RSSDYLLSV-SHDQTTRVFAPWKNVASLMGEN 262 (351)
Q Consensus 188 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~-~~~v~~v~~--s-p~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~ 262 (351)
..+++++.||.|+-+|..+++. +-++... ..++....- . .++..++.. ..||.|..++..++. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~-----~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~------~ 79 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHI-----IWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGL------Q 79 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEE-----EEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEE------E
T ss_pred CEEEEEeCCCeEEEEECCCCcE-----EEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCc------E
Confidence 4678888999999999887743 2222211 111111110 0 122333333 579999999987764 1
Q ss_pred ceEEe-ccccccccceeEEEEeeeC-------CCcEEEEecCCCeEEEEecC-chhhhceee
Q 048511 263 SWHEV-ARPQVHGHDINCVTIIQGK-------GNHRFVSGADEKVARVFEAP-LSFLKTLNH 315 (351)
Q Consensus 263 ~~~~~-~~~~~~~~~i~~~~~~~~~-------~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~ 315 (351)
.|..- ..+ ....++.. .-.|.- .+..+.+|+.+|.+.-.|+. |+.+..+..
T Consensus 80 ~~~~~~~~l-v~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 80 KLPLSIRQL-VSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp EEEEEHHHH-HTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred Eeeeccccc-eecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 22211 111 01111211 111111 36688899999999999976 877776654
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=73.60 E-value=34 Score=27.56 Aligned_cols=127 Identities=13% Similarity=0.095 Sum_probs=66.3
Q ss_pred CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEE
Q 048511 147 DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVM 226 (351)
Q Consensus 147 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~ 226 (351)
||.|..|=.... ++.- ........|..++.-... .+.-. ||.|+.|-..... ++- ....-...|.
T Consensus 119 ~G~v~~wG~n~~-gqlg------~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~g----qlg-~p~~~~~~v~ 183 (282)
T 3qhy_B 119 DGKVIAWGDDSD-GQTT------VPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFG----QTT-VPAEAQSGVD 183 (282)
T ss_dssp TTEEEEEECCTT-STTS------CCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTS----TTS-CCGGGGSSEE
T ss_pred CCeEEEecCCCC-CcCC------CCccCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCC----CCC-CceecCCCeE
Confidence 999999976542 2111 011223456666654333 22233 7999999765432 111 1011134577
Q ss_pred EEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 227 DISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 227 ~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
.|+..... .++. .||.|+.|-...... +..+......|..++.-. ...++.. ||.|..|-..
T Consensus 184 ~i~~G~~h-s~al--~~G~v~~wG~n~~gq----------lg~p~~~~~~v~~i~~G~---~h~~al~--~g~v~~wG~n 245 (282)
T 3qhy_B 184 DVAGGIFH-SLAL--KDGKVIAWGDNRYKQ----------TTVPTEALSGVSAIASGE---WYSLALK--NGKVIAWGSS 245 (282)
T ss_dssp EEEECSSE-EEEE--ETTEEEEEECCTTST----------TCCCGGGGSSCCEEEECS---SCEEEEE--TTEEEEESTT
T ss_pred EEEecCCE-EEEE--ECCeEEEEECCCCCC----------CCCCcccCCCceEEEcCC---CEEEEEE--CCEEEEecCC
Confidence 77655442 3333 599999998654431 111111123466666533 3333333 9999999865
No 351
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=68.53 E-value=18 Score=32.64 Aligned_cols=79 Identities=11% Similarity=0.027 Sum_probs=52.3
Q ss_pred EEEEEeecCCCEEEEEeC-CCcEEEEcCCCcccccc----CccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCe
Q 048511 225 VMDISWSRSSDYLLSVSH-DQTTRVFAPWKNVASLM----GENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKV 299 (351)
Q Consensus 225 v~~v~~sp~~~~l~s~~~-dg~i~vwd~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~ 299 (351)
...+..+|||++++.++. +.++.|+|++....... ..+.. .+..++ -+-.....+|.+ +|....+---|..
T Consensus 325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~-~~ae~e-~GlGPlHt~Fd~--~G~aYTtlfidSq 400 (638)
T 3sbq_A 325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDV-IVGEPE-LGLGPLHTTFDG--RGNAYTTLFIDSQ 400 (638)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGG-EEECCB-CCSCEEEEEECS--SSEEEEEETTTTE
T ss_pred CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccc-eEeecc-CCCcccEEEECC--CCceEeeeeecce
Confidence 456788999999876654 88999999875321000 00000 122222 234467889998 8877778889999
Q ss_pred EEEEecCc
Q 048511 300 ARVFEAPL 307 (351)
Q Consensus 300 v~vw~~~~ 307 (351)
|.-|++..
T Consensus 401 vvkWni~~ 408 (638)
T 3sbq_A 401 VVKWNMEE 408 (638)
T ss_dssp EEEEEHHH
T ss_pred EEEEeccH
Confidence 99999863
No 352
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=64.86 E-value=53 Score=26.39 Aligned_cols=127 Identities=11% Similarity=0.038 Sum_probs=66.9
Q ss_pred CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEE
Q 048511 147 DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVM 226 (351)
Q Consensus 147 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~ 226 (351)
||.|..|-.... ++.-. .......|..++.... +.+.-. +|.|+.|-..... ++-.. ......|.
T Consensus 80 ~G~v~~wG~n~~-Gqlg~------P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~g----qlg~~-~~~~~~i~ 144 (282)
T 3qhy_B 80 DGEVIAWGGNED-GQTTV------PAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDG----QTTVP-AEAQSGVT 144 (282)
T ss_dssp TTEEEEEECCTT-STTCC------CGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTS----TTSCC-GGGGSSEE
T ss_pred CCEEEEeeCCCC-CCCCC------CcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCC----cCCCC-ccCCCCeE
Confidence 899999976542 11110 0111235777776443 333344 9999999765432 11111 11234577
Q ss_pred EEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511 227 DISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306 (351)
Q Consensus 227 ~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~ 306 (351)
.++...... ++ -. ||.|+.|-..... .+..+......|..++.-. ...++. .||.|..|-..
T Consensus 145 ~i~~G~~~~-~~-l~-~G~v~~wG~n~~g----------qlg~p~~~~~~v~~i~~G~---~hs~al--~~G~v~~wG~n 206 (282)
T 3qhy_B 145 ALDGGVYTA-LA-VK-NGGVIAWGDNYFG----------QTTVPAEAQSGVDDVAGGI---FHSLAL--KDGKVIAWGDN 206 (282)
T ss_dssp EEEECSSEE-EE-EE-TTEEEEEECCTTS----------TTSCCGGGGSSEEEEEECS---SEEEEE--ETTEEEEEECC
T ss_pred EEEcccCEE-EE-EE-CCEEEEecCCCCC----------CCCCceecCCCeEEEEecC---CEEEEE--ECCeEEEEECC
Confidence 776544332 22 33 7999999875543 1111112234466665533 333444 69999999754
No 353
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=62.77 E-value=8.9 Score=35.60 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=24.5
Q ss_pred ccEEEEeeCCCcEEEEecCCCcccceeec
Q 048511 49 SILLVSSSQDKVIRIWKLALRGSSANTQS 77 (351)
Q Consensus 49 ~~~l~t~~~dg~i~iwd~~~~~~~~~~~~ 77 (351)
..+++|-+.|+++|+|++.+++.+.....
T Consensus 231 ~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 231 ERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 67999999999999999999887655443
No 354
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=60.49 E-value=95 Score=29.37 Aligned_cols=114 Identities=13% Similarity=0.125 Sum_probs=58.9
Q ss_pred ccceEEEEEcCCC-CEEEEEeeCCeEEEEEcccCcccCccccccccc----ccccEEEEEeecC-CCEEEEEeCCCc---
Q 048511 175 ALGFYGGHWSPDG-RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG----HFAAVMDISWSRS-SDYLLSVSHDQT--- 245 (351)
Q Consensus 175 ~~~i~~i~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~----~~~~v~~v~~sp~-~~~l~s~~~dg~--- 245 (351)
...|.+|+++|.. ..+++++..+.|...+= .++ .|+.+..... ....|.+|++.|. ...++.+..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~--tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~ 90 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTS--KWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDE 90 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTT--EEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSS
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCC--CeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCc
Confidence 3579999999963 56666766665544432 221 1333322111 1346899999984 233443332211
Q ss_pred -EEEEcCCCccccccCccceEEecccccc-----c-cceeEEEEeeeCCCcEEEEecCCC
Q 048511 246 -TRVFAPWKNVASLMGENSWHEVARPQVH-----G-HDINCVTIIQGKGNHRFVSGADEK 298 (351)
Q Consensus 246 -i~vwd~~~~~~~~~~~~~~~~~~~~~~~-----~-~~i~~~~~~~~~~~~~l~s~~~dg 298 (351)
-.||....+. .+|+.+...... . ..+..++++| .+...+..+...+
T Consensus 91 ~~~v~~S~DgG------~TW~~~~~~~~~~~~~~~~~~~~~iav~p-~~~~~v~~g~~~~ 143 (789)
T 1sqj_A 91 WAAFYVSEDRG------QSFTIYESPFPMGANDMGRNNGERLAVNP-FNSNEVWMGTRTE 143 (789)
T ss_dssp CCEEEEESSTT------SEEEEEECSSCCCTTSTTTTSCCCEEEET-TEEEEEEEECSSS
T ss_pred ccEEEEECCCC------CcceeccCCcccCccCCCccceeEEEEcC-CCCCEEEEEeccC
Confidence 3455444433 478776532111 1 1356788887 2344555555333
No 355
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=56.41 E-value=90 Score=26.27 Aligned_cols=110 Identities=12% Similarity=0.045 Sum_probs=56.0
Q ss_pred ceEEEEEcCC--CCEEEEEeeCCeEEEEEcccCcccCcccccccc----------------cccccEEEEEeecC-CCEE
Q 048511 177 GFYGGHWSPD--GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS----------------GHFAAVMDISWSRS-SDYL 237 (351)
Q Consensus 177 ~i~~i~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~----------------~~~~~v~~v~~sp~-~~~l 237 (351)
.|.++++.|. ...++++...+.|...+-... .|+.+..+. .....+.+|.+.|. ...|
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~---tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l 192 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGA---SWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHL 192 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEESSTTS---BCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCC---CeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEE
Confidence 5778999873 456777766666554422211 122222111 11235788999873 3444
Q ss_pred EEEeCCCcEEEEcCCCccccccCccceEEeccc-cc-c--------ccceeEEEEeeeCCCcEEEEecCCC
Q 048511 238 LSVSHDQTTRVFAPWKNVASLMGENSWHEVARP-QV-H--------GHDINCVTIIQGKGNHRFVSGADEK 298 (351)
Q Consensus 238 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~-~--------~~~i~~~~~~~~~~~~~l~s~~~dg 298 (351)
..+..++.|... ..+. ..|+.+... .. + ...+.++++.+ .+...|..+...+
T Consensus 193 ~vg~~~ggl~~s--~DgG------~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~-~~~~~l~vg~~~g 254 (394)
T 3b7f_A 193 YIGMSSGGVFES--TDAG------TDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHP-AAPDILYQQNHCG 254 (394)
T ss_dssp EEEEETBEEEEE--SSTT------SSCEECCTTCCCTTSSSSSSSSCBCEEEEEECS-SSTTEEEEEETTE
T ss_pred EEEECCCCEEEE--CCCC------CCceECCCCccccccCCCccccCcceeEEEECC-CCCCEEEEEcCCe
Confidence 445444444433 2222 256555321 10 0 23488899887 2235555565555
No 356
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=55.31 E-value=29 Score=31.58 Aligned_cols=58 Identities=17% Similarity=0.082 Sum_probs=37.0
Q ss_pred eEEEEEcCCCCEEEEEeeC------------CeEEEEEcccCcccCccccccccc-ccccEEEEEeecCCCEEEEE
Q 048511 178 FYGGHWSPDGRSILAHGYG------------GAFHLWRNVGVDIDNWQPQKVPSG-HFAAVMDISWSRSSDYLLSV 240 (351)
Q Consensus 178 i~~i~~~~~~~~l~~~~~d------------g~i~~~d~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~l~s~ 240 (351)
.--|+|+|.|.+++.-..+ ..+.+.+..+++. ...+.+ ....++.++|+||++.|+..
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~-----~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEI-----RRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCE-----EEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeE-----EEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4568999999866654332 2455555555532 222222 34689999999999887765
No 357
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=55.12 E-value=8.9 Score=38.16 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=24.9
Q ss_pred CCccEEEEeeCCCcEEEEecCCCccccee
Q 048511 47 AISILLVSSSQDKVIRIWKLALRGSSANT 75 (351)
Q Consensus 47 ~~~~~l~t~~~dg~i~iwd~~~~~~~~~~ 75 (351)
.+..+++|-+.|+++|+|++.+++++...
T Consensus 247 ~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 247 STYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp TTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred CCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 56789999999999999999998876544
No 358
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=52.55 E-value=95 Score=25.39 Aligned_cols=196 Identities=9% Similarity=0.012 Sum_probs=100.3
Q ss_pred CCccEEEEeeCCCcEEEEecCCCcccc-------eeecccccceeeeEeeecCCeEEecCCceeEEEEEe----------
Q 048511 47 AISILLVSSSQDKVIRIWKLALRGSSA-------NTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL---------- 109 (351)
Q Consensus 47 ~~~~~l~t~~~dg~i~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------- 109 (351)
++..++++.+.+|.|+--.+....... .+..........+........++.-...+.+.....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 456688889999999887765442211 111112233334433444444444333333322211
Q ss_pred ----------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceE
Q 048511 110 ----------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFY 179 (351)
Q Consensus 110 ----------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~ 179 (351)
+. ..+.|..+...+.. .+... |+..+..|.++...+.........-.....+.. ...+.
T Consensus 86 ~G~~i~~~l~l~-~~e~i~~~~~~~~~---~~~~~------ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv 154 (312)
T 1suu_A 86 KGQNISELINLG-DQEEILTIKNSKDL---TDDAY------LLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVT 154 (312)
T ss_dssp --CBGGGTSCCC-TTCCEEEEEEESCC---CTTCE------EEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEE
T ss_pred CCcChhhccCCC-CCCEEEEEEEeccC---CCCCE------EEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEE
Confidence 11 11234444322100 12344 788899999999888652111000011111222 44566
Q ss_pred EEEEcCCCCEEEEEeeCCeEEEEEcccCcc----cCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCc
Q 048511 180 GGHWSPDGRSILAHGYGGAFHLWRNVGVDI----DNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKN 254 (351)
Q Consensus 180 ~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~----~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~ 254 (351)
.+........++..+.+|.+..+....-.. ..-.....+.. ...|.++....++..+++.+..|..+..++..-
T Consensus 155 ~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 155 SAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp EEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred EEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 655555566788899999999998754210 00111222322 345666655555667888889999888887543
No 359
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=52.27 E-value=1.9e+02 Score=28.78 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=27.8
Q ss_pred eeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhcee
Q 048511 277 INCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLN 314 (351)
Q Consensus 277 i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~ 314 (351)
+.+++..+ +..++++-+.|+++|||++. +.++.+..
T Consensus 240 ~vs~~~~~--~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLS--TYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEET--TTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccC--CccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 44555555 77899999999999999986 77776643
No 360
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=48.71 E-value=2e+02 Score=27.97 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=28.8
Q ss_pred cEEEEEeecCCCEEEEEeCCCcEEEEcCCCccc
Q 048511 224 AVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVA 256 (351)
Q Consensus 224 ~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~ 256 (351)
.+.+++..++..++++-+.|+++|+|++.++++
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~ 269 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQC 269 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCe
Confidence 567778888888999999999999999998874
No 361
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=47.62 E-value=1.3e+02 Score=25.53 Aligned_cols=109 Identities=8% Similarity=0.117 Sum_probs=60.0
Q ss_pred EEeecCCeEEEEeccCCCcceEEEEEeccc---------ccc----ccceEEEEEcCC----CCEEEEEeeCCeEEEEEc
Q 048511 142 LSASMDKTMMIWQPEKTTGIWMNVVTVGEL---------SHS----ALGFYGGHWSPD----GRSILAHGYGGAFHLWRN 204 (351)
Q Consensus 142 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------~~~----~~~i~~i~~~~~----~~~l~~~~~dg~i~~~d~ 204 (351)
++=+..+-|.++|+.+ ++.-+....... .+. ...+..|+++|+ ++.|+-....+ -++|.+
T Consensus 175 ItD~~~~gLIVydl~~--~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V 251 (381)
T 3q6k_A 175 ITNFLRGALFIYDHKK--QDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSV 251 (381)
T ss_dssp EEETTTTEEEEEETTT--TEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEE
T ss_pred EEcCCCCcEEEEECCC--CcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEE
Confidence 3333467799999988 433322210000 011 246889999998 77777666554 245555
Q ss_pred ccCcccCccccc--cccccc---ccEEEEEee-cCCCEEEEEeCCCcEEEEcCCC
Q 048511 205 VGVDIDNWQPQK--VPSGHF---AAVMDISWS-RSSDYLLSVSHDQTTRVFAPWK 253 (351)
Q Consensus 205 ~~~~~~~~~~~~--~~~~~~---~~v~~v~~s-p~~~~l~s~~~dg~i~vwd~~~ 253 (351)
.+.-.+...... +..+.. ..-..+++. .+|.++++--....|..|+...
T Consensus 252 ~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 252 NTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 432111111111 111222 233445665 5777777777889999999875
No 362
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=47.21 E-value=69 Score=29.00 Aligned_cols=60 Identities=17% Similarity=0.073 Sum_probs=38.5
Q ss_pred ceEEEEEcCCCCEEEEEee------------CCeEEEEEcccCcccCccccccccc-ccccEEEEEeecCCCEEEEEe
Q 048511 177 GFYGGHWSPDGRSILAHGY------------GGAFHLWRNVGVDIDNWQPQKVPSG-HFAAVMDISWSRSSDYLLSVS 241 (351)
Q Consensus 177 ~i~~i~~~~~~~~l~~~~~------------dg~i~~~d~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~l~s~~ 241 (351)
....|+|+++|.+.++... ...+..++..+++. ...+.. ....++.++|+||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel-----~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEI-----RRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCE-----EEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeE-----EEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 4567999999987664322 12566666655532 222222 235789999999999887664
No 363
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=40.54 E-value=1.5e+02 Score=24.37 Aligned_cols=161 Identities=9% Similarity=-0.031 Sum_probs=84.5
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcc--cCccc----Cccc
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNV--GVDID----NWQP 214 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~--~~~~~----~~~~ 214 (351)
++..+.+|.++--.+.........-.....+. ....+..+........++..+..|.+..+... .-... .-..
T Consensus 112 ~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lk-e~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~ 190 (327)
T 3uc1_A 112 LVLATRNGLVKKSKLTDFDSNRSGGIVAVNLR-DNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQ 190 (327)
T ss_dssp EEEEETTSEEEEEEGGGGCCCCSSCEESCBCC-TTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEE
T ss_pred EEEEcCCCEEEEeEHHHhhccccCceEEEEEC-CCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCee
Confidence 99999999999988765211110001111111 23445555555556678888899998888776 21100 0011
Q ss_pred ccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEe
Q 048511 215 QKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSG 294 (351)
Q Consensus 215 ~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~ 294 (351)
...+. ....|.++...+++.+|+..+..|.++.-.+...........-. ....+..-...+-.+.... +...++..
T Consensus 191 ~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~-~~~~l~~~~d~lv~~~~~~--~~~~i~l~ 266 (327)
T 3uc1_A 191 GMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGV-LTVMYDRRRGRLVGALIVD--DDSELYAV 266 (327)
T ss_dssp SSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCE-ESSCCCTTTCSEEEEEEEC--TTCEEEEE
T ss_pred eecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcE-EEEEecCCCCeEEEEEEeC--CCccEEEE
Confidence 12232 23456666666666788889999998887654332110000011 1112211122344443333 34556666
Q ss_pred cCCCeEEEEecC
Q 048511 295 ADEKVARVFEAP 306 (351)
Q Consensus 295 ~~dg~v~vw~~~ 306 (351)
+.+|.+.-+...
T Consensus 267 T~~G~~ir~~~~ 278 (327)
T 3uc1_A 267 TSGGGVIRTAAR 278 (327)
T ss_dssp EGGGCEEEEEGG
T ss_pred cCCCeEEEEehh
Confidence 677776666543
No 364
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=39.81 E-value=1.7e+02 Score=24.65 Aligned_cols=109 Identities=11% Similarity=0.009 Sum_probs=61.6
Q ss_pred eEEeecCCeEEEEeccCCCc---ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc----Ccc
Q 048511 141 ILSASMDKTMMIWQPEKTTG---IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID----NWQ 213 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~----~~~ 213 (351)
|+.++..|.++.-.+..... .-+..+. +. ....+..+........++..+.+|.+..|....-... .-.
T Consensus 116 ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~---L~-~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV 191 (370)
T 3l6v_A 116 VFMATRNGTVKKTPLSEFAFRLARGKIAIN---LD-EGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGV 191 (370)
T ss_dssp EEEEETTSEEEEEEGGGGCSCCTTCEESSC---CC-TTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCE
T ss_pred EEEEeCCCeEEEeEHHHhhcccCCceEEEE---eC-CCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCe
Confidence 89999999999988765211 1111111 11 2344555555555567888888998888876432110 000
Q ss_pred cccccccccccEEEEEeec-----------------------------------CCCEEEEEeCCCcEEEEcCCCc
Q 048511 214 PQKVPSGHFAAVMDISWSR-----------------------------------SSDYLLSVSHDQTTRVFAPWKN 254 (351)
Q Consensus 214 ~~~~~~~~~~~v~~v~~sp-----------------------------------~~~~l~s~~~dg~i~vwd~~~~ 254 (351)
....+. ....|.++...+ ++..+++.+..|..+...+...
T Consensus 192 ~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~ 266 (370)
T 3l6v_A 192 RGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEY 266 (370)
T ss_dssp ECCCCC-TTCCEEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGGGS
T ss_pred eeEEeC-CCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHh
Confidence 111222 234455554444 3457888899998888776543
No 365
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=33.00 E-value=1.9e+02 Score=23.11 Aligned_cols=155 Identities=10% Similarity=-0.033 Sum_probs=85.3
Q ss_pred eEEeecCCeEEEEeccCCC--cceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc----Cccc
Q 048511 141 ILSASMDKTMMIWQPEKTT--GIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID----NWQP 214 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~----~~~~ 214 (351)
++..+.+|.++-..+..-. ..-...+. + .....+..+........++..+..|.+..+....-... .-..
T Consensus 83 ~v~~T~~G~iKr~~l~~~~~~~~G~~~i~---l-kegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~ 158 (276)
T 3no0_A 83 LLLATKKGYVKKIPLAEFEYKAQGMPIIK---L-TEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ 158 (276)
T ss_dssp EEEEETTSEEEEEEGGGTTTCSTTEECSC---C-CTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE
T ss_pred EEEEeCCCEEEEEEHHHhhhhcCCeEEEe---c-CCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE
Confidence 8889999999999876521 00011111 1 12345666655556668888999999888876432110 0011
Q ss_pred ccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEe
Q 048511 215 QKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSG 294 (351)
Q Consensus 215 ~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~ 294 (351)
...+.. ...|.++...+++..++..+..|.++...+..-........-...+ ..+..+..+.... +...++..
T Consensus 159 ~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i----~~~~~lv~~~~~~--~~~~i~~~ 231 (276)
T 3no0_A 159 GIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS----GTKDTLVDLIPIK--EEVELLIT 231 (276)
T ss_dssp CCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC----CSSSCEEEEEEES--SEEEEEEE
T ss_pred EEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE----cCCCcEEEEEEeC--CCCEEEEE
Confidence 122332 3456666655666788888999998888764432111000011111 1223344443333 45566667
Q ss_pred cCCCeEEE--EecC
Q 048511 295 ADEKVARV--FEAP 306 (351)
Q Consensus 295 ~~dg~v~v--w~~~ 306 (351)
+.+|.+.. ++.+
T Consensus 232 t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 232 TKNGKAFYDKINQK 245 (276)
T ss_dssp ETTSCEEEEEEEGG
T ss_pred cCCCeEEEeeeCHH
Confidence 77777777 7643
No 366
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=31.09 E-value=2.1e+02 Score=23.13 Aligned_cols=108 Identities=6% Similarity=-0.080 Sum_probs=58.3
Q ss_pred EEEcCCCCEEEEEee-CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCC--CcEEEEcCCCcccc
Q 048511 181 GHWSPDGRSILAHGY-GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD--QTTRVFAPWKNVAS 257 (351)
Q Consensus 181 i~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d--g~i~vwd~~~~~~~ 257 (351)
.+++++++.|+-.+. ...|...++..+.. ...+. +... ..+.|++.+|+-...+ ..|..-++.....
T Consensus 150 ~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~-----~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~- 219 (302)
T 3s25_A 150 FTCNTSDRYFYYNNPKNGQLYRYDTASQSE-----ALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP- 219 (302)
T ss_dssp CCSEEETTEEEEECTTTCCEEEEETTTTEE-----EEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-
T ss_pred eEeeEECCEEEEEeCCCceEEEEECCCCCE-----EEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-
Confidence 356778887775554 56788888766532 11122 1222 3466988888765543 3555555554431
Q ss_pred ccCccceEEeccccccccceeEEEEeeeCCCcEEEEe--cCCCeEEEEecCchhhhcee
Q 048511 258 LMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSG--ADEKVARVFEAPLSFLKTLN 314 (351)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~--~~dg~v~vw~~~~~~~~~~~ 314 (351)
..+. ...+ ..|+| ++.+|.-+ +....|..-++.|...+.+.
T Consensus 220 -------~~Lt-----~~~~--~~~~~--~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~ 262 (302)
T 3s25_A 220 -------VVLT-----EANI--EHYNV--YGSLIFYQRGGDNPALCVVKNDGTGFKELA 262 (302)
T ss_dssp -------EECS-----CSCE--EEEEE--ETTEEEEEECSSSCEEEEEETTSCCCEEEE
T ss_pred -------EEEe-----CCCc--ceEEE--CCCEEEEEECCCCcEEEEEECCCCccEEee
Confidence 1121 1123 23666 56666543 23466777777766555553
No 367
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=29.17 E-value=2.3e+02 Score=22.92 Aligned_cols=93 Identities=6% Similarity=-0.025 Sum_probs=48.2
Q ss_pred eEEeec-CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC--CeEEEEEcccCcccCcccccc
Q 048511 141 ILSASM-DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG--GAFHLWRNVGVDIDNWQPQKV 217 (351)
Q Consensus 141 l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--g~i~~~d~~~~~~~~~~~~~~ 217 (351)
|.-.+. ...|..-++.. +.. ..+. .. ... ..++|++.+|+-...+ ..|..-++.... ...
T Consensus 159 iy~t~~g~~~Iy~~~l~g--~~~-~~l~----~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~------~~~ 221 (302)
T 3s25_A 159 FYYNNPKNGQLYRYDTAS--QSE-ALFY----DC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN------PVV 221 (302)
T ss_dssp EEEECTTTCCEEEEETTT--TEE-EEEE----CS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC------CEE
T ss_pred EEEEeCCCceEEEEECCC--CCE-EEEe----CC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC------eEE
Confidence 443333 56677777664 322 2221 01 112 2456888888766544 356666666543 222
Q ss_pred cccccccEEEEEeecCCCEEEEEeC--CCcEEEEcCCCc
Q 048511 218 PSGHFAAVMDISWSRSSDYLLSVSH--DQTTRVFAPWKN 254 (351)
Q Consensus 218 ~~~~~~~v~~v~~sp~~~~l~s~~~--dg~i~vwd~~~~ 254 (351)
+.. ..+ ..|+|++.+|.-++. ...|..-++...
T Consensus 222 Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 222 LTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp CSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred EeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 221 223 347888888875532 345666555443
No 368
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=27.58 E-value=2.6e+02 Score=22.98 Aligned_cols=108 Identities=7% Similarity=-0.046 Sum_probs=62.2
Q ss_pred eEEeecCCeEEEEeccCCCc----ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc----Cc
Q 048511 141 ILSASMDKTMMIWQPEKTTG----IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID----NW 212 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~----~~ 212 (351)
++.++..|.++--.+..-.. .-+..+. +.. ...+..+........++..+.+|.+..+....-... .-
T Consensus 109 ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~---l~e-~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~G 184 (323)
T 1wp5_A 109 FLFVTRNGMVKKTELKHYKAQRYSKPLTGIN---LKN-DDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAG 184 (323)
T ss_dssp EEEEETTSEEEEEEGGGGCCSCCSSCEECSC---CCT-TCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCC
T ss_pred EEEEeCCCeEEEeEHHHhhhccccCceEEEE---eCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcC
Confidence 88889999999998864211 1111111 112 244555555455667888899999988887542110 00
Q ss_pred ccccccccccccEEEEEeecCCC-EEEEEeCCCcEEEEcCCC
Q 048511 213 QPQKVPSGHFAAVMDISWSRSSD-YLLSVSHDQTTRVFAPWK 253 (351)
Q Consensus 213 ~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~~dg~i~vwd~~~ 253 (351)
.....+. ....|.++...+++. .|++.+..|..+..++..
T Consensus 185 V~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 185 VKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 1111222 234566665444444 678888888887776644
No 369
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=27.51 E-value=3.1e+02 Score=24.72 Aligned_cols=78 Identities=12% Similarity=-0.001 Sum_probs=44.4
Q ss_pred EEEEEeec----CC--CEEEEEeCCCcEE-EEcCCCccccccCccceEEeccccc--------cccceeEEEEeeeCCCc
Q 048511 225 VMDISWSR----SS--DYLLSVSHDQTTR-VFAPWKNVASLMGENSWHEVARPQV--------HGHDINCVTIIQGKGNH 289 (351)
Q Consensus 225 v~~v~~sp----~~--~~l~s~~~dg~i~-vwd~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~~ 289 (351)
.+.|+... ++ ..++.|+.+|.|. +...............++++..+.. ...+|..+.+++ +..
T Consensus 405 lT~IaVd~~~g~~~~ytVlFLGTd~G~l~Kvv~~~~~~~~~~~~~~iEEi~vf~~~~~~~~~~~~~pI~~L~ls~--~~~ 482 (565)
T 3oky_B 405 LTKIAVDNAAGPYQNHTVVFLGSEKGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRIMGMQLDR--ASG 482 (565)
T ss_dssp EEEEEEEEEETTTTCEEEEEEEETTSEEEEEEECC-----CCCCEEEEEEECCCHHHHCBTTBCCCCCCEEEEEG--GGT
T ss_pred eEEEEEEEEecCCCceEEEEEECCCCeEEEEEecCCCCccccccEEEEEEEEeccccccccccCCCceEEEEEcC--CCC
Confidence 46777664 22 3477888999874 4332211100000112223322221 245688999998 788
Q ss_pred EEEEecCCCeEEEEe
Q 048511 290 RFVSGADEKVARVFE 304 (351)
Q Consensus 290 ~l~s~~~dg~v~vw~ 304 (351)
.|..++.++.++|-=
T Consensus 483 ~LYV~s~~~V~qVPl 497 (565)
T 3oky_B 483 SLYVAFSTCVIKVPL 497 (565)
T ss_dssp EEEEECSSCEEEEES
T ss_pred EEEEEecCeEEEeeh
Confidence 899999999988863
No 370
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=26.90 E-value=2.8e+02 Score=25.19 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=24.5
Q ss_pred eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEE
Q 048511 149 TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAH 193 (351)
Q Consensus 149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 193 (351)
.+.+.+..+ ++....+. ......++.++|+||++.|++.
T Consensus 510 ~~~~~~~~~--g~~~rf~~----~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 510 QMLCADPAT--GEIRRFMV----GPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTT--CCEEEEEE----CCTTCEEEEEEECTTSSEEEEE
T ss_pred eEEEEeCCC--CeEEEEEe----CCCCccCcCeeECCCCCEEEEE
Confidence 344555554 44433332 1245689999999999988765
No 371
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=25.24 E-value=2.7e+02 Score=22.53 Aligned_cols=111 Identities=9% Similarity=0.007 Sum_probs=63.2
Q ss_pred eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc----Cccccc
Q 048511 141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID----NWQPQK 216 (351)
Q Consensus 141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~----~~~~~~ 216 (351)
++..+..|.++--.+..-......-+....+... ..+..+........++..+.+|.+..+....-... .-....
T Consensus 112 ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i 190 (307)
T 1zi0_A 112 VFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGI 190 (307)
T ss_dssp EEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECC
T ss_pred EEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeE
Confidence 8888999999998876411110001111111122 45555555455567888888998888877532110 001111
Q ss_pred ccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCC
Q 048511 217 VPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWK 253 (351)
Q Consensus 217 ~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~ 253 (351)
.+. ....|.++...+++..+++.+..|.++-.++..
T Consensus 191 ~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 191 RLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp CCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred EeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 222 234566665555566788888999988887743
No 372
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=23.30 E-value=4.6e+02 Score=24.43 Aligned_cols=64 Identities=11% Similarity=-0.005 Sum_probs=35.2
Q ss_pred cceEEEEEcCCCCEEEEEeeCC-eEEEEEcccCcccCcccccccccccccEEEEEeecC--CCEEEEEeCCCc
Q 048511 176 LGFYGGHWSPDGRSILAHGYGG-AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS--SDYLLSVSHDQT 245 (351)
Q Consensus 176 ~~i~~i~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~--~~~l~s~~~dg~ 245 (351)
..+..+...|.+..|+++..|. .++--|+.... ...+........+|++..+ ..+++++..|+.
T Consensus 433 ~~~~~~~~~p~~~~l~~~~~d~g~~~~~d~~~~~------~~~~~~~~~~~~~i~~ag~~~~~~v~vG~~dg~ 499 (737)
T 2cn3_A 433 CAVLDLVSPPEGAPLVSAVGDLVGFVHDDLKVGP------KKMHVPSYSSGTGIDYAELVPNFMALVAKADLY 499 (737)
T ss_dssp CBEEEEECCSSSCSEEEEETTTBCCEESSTTSCC------SSCSCTTCSEEEEEEEETTEEEEEEEEEECSSC
T ss_pred eeeeeEEcCCCCCeeEEEEeccCCeEEcccccCC------ccccCCccccccceeecccCCCeEEEEECcCCC
Confidence 3455667778887788777663 33333343321 1111223334677888765 245667776664
No 373
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=22.33 E-value=2.2e+02 Score=25.49 Aligned_cols=71 Identities=10% Similarity=0.036 Sum_probs=0.0
Q ss_pred EEEEEeecCCCE--EEEEeCCCcEEEEcCCCccccccCcc-ceEEecccccccccee-EEEEeeeCCCcEEEEecCCCeE
Q 048511 225 VMDISWSRSSDY--LLSVSHDQTTRVFAPWKNVASLMGEN-SWHEVARPQVHGHDIN-CVTIIQGKGNHRFVSGADEKVA 300 (351)
Q Consensus 225 v~~v~~sp~~~~--l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~i~-~~~~~~~~~~~~l~s~~~dg~v 300 (351)
+++|+....+.+ ++.|+.+|.|.=.-+.... .. .......+...+.+|. .|.+++ +...|..++.++.+
T Consensus 402 lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~-----~~~~~~e~~~v~~~~~pv~~~l~~~~--~~~~Lyv~s~~~V~ 474 (539)
T 3al9_A 402 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPP-----HGGVQYEMVSVFKDGSPILRDMAFSI--NQLYLYVMSERQVT 474 (539)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEEEETT-----TEEEEEEEEECCTTCCCCCSCCEECT--TSSEEEEECSSEEE
T ss_pred eEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCC-----ccceeEEEEEeecCCCccccceEEcc--CCCeEEEEeccccc
Q ss_pred EE
Q 048511 301 RV 302 (351)
Q Consensus 301 ~v 302 (351)
+|
T Consensus 475 kv 476 (539)
T 3al9_A 475 RV 476 (539)
T ss_dssp EE
T ss_pred ee
Done!