BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048514
(89 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5R|A Chain A, Structure Determination Of The Small Ubiquitin-Related
Modifier Sumo-1, Nmr, 10 Structures
Length = 103
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 13 FINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQL 72
+I L V GQD+ ++F+ + +KKL +YC+++ + FL G R TP +L
Sbjct: 23 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 82
Query: 73 GLKDGDEI 80
G+++ D I
Sbjct: 83 GMEEEDVI 90
>pdb|2IY0|B Chain B, Senp1 (Mutant) Sumo1 Rangap
Length = 82
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 13 FINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQL 72
+I L V GQD+ ++F+ + +KKL +YC+++ + FL G R TP +L
Sbjct: 2 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 61
Query: 73 GLKDGDEI 80
G+++ D I
Sbjct: 62 GMEEEDVI 69
>pdb|2IY1|B Chain B, Senp1 (Mutant) Full Length Sumo1
pdb|2IY1|D Chain D, Senp1 (Mutant) Full Length Sumo1
Length = 83
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 13 FINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQL 72
+I L V GQD+ ++F+ + +KKL +YC+++ + FL G R TP +L
Sbjct: 2 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 61
Query: 73 GLKDGDEI 80
G+++ D I
Sbjct: 62 GMEEEDVI 69
>pdb|3KYD|D Chain D, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 115
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 13 FINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQL 72
+I L V GQD+ ++F+ + +KKL +YC+++ + FL G R TP +L
Sbjct: 40 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 99
Query: 73 GLKDGDEI 80
G+++ D I
Sbjct: 100 GMEEEDVI 107
>pdb|2KQS|A Chain A, Phosphorylation Of Sumo-Interacting Motif By Ck2
Enhances Daxx Sumo Binding Activity
Length = 99
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 13 FINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQL 72
+I L V GQD+ ++F+ + +KKL +YC+++ + FL G R TP +L
Sbjct: 23 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 82
Query: 73 GLKDGDEI 80
G+++ D I
Sbjct: 83 GMEEEDVI 90
>pdb|2UYZ|B Chain B, Non-Covalent Complex Between Ubc9 And Sumo1
pdb|2VRR|B Chain B, Structure Of Sumo Modified Ubc9
Length = 79
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 13 FINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQL 72
+I L V GQD+ ++F+ + +KKL +YC+++ + FL G R TP +L
Sbjct: 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 62
Query: 73 GLKDGDEI 80
G+++ D I
Sbjct: 63 GMEEEDVI 70
>pdb|1Y8R|C Chain C, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|F Chain F, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1WYW|B Chain B, Crystal Structure Of Sumo1-Conjugated Thymine Dna
Glycosylase
pdb|2PE6|B Chain B, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
pdb|2ASQ|A Chain A, Solution Structure Of Sumo-1 In Complex With A
Sumo-Binding Motif (Sbm)
Length = 97
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 13 FINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQL 72
+I L V GQD+ ++F+ + +KKL +YC+++ + FL G R TP +L
Sbjct: 21 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 80
Query: 73 GLKDGDEI 80
G+++ D I
Sbjct: 81 GMEEEDVI 88
>pdb|1Z5S|B Chain B, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2IO2|B Chain B, Crystal Structure Of Human Senp2 In Complex With
Rangap1-sumo-1
Length = 82
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 13 FINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQL 72
+I L V GQD+ ++F+ + +KKL +YC+++ + FL G R TP +L
Sbjct: 6 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 65
Query: 73 GLKDGDEI 80
G+++ D I
Sbjct: 66 GMEEEDVI 73
>pdb|2BF8|B Chain B, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 77
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 13 FINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQL 72
+I L V GQD+ ++F+ + +KKL +YC+++ + FL G R TP +L
Sbjct: 1 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 60
Query: 73 GLKDGDEI 80
G+++ D I
Sbjct: 61 GMEEEDVI 68
>pdb|2G4D|B Chain B, Crystal Structure Of Human Senp1 Mutant (C603s) In
Complex With Sumo-1
pdb|2G4D|D Chain D, Crystal Structure Of Human Senp1 Mutant (C603s) In
Complex With Sumo-1
pdb|2LAS|A Chain A, Molecular Determinants Of Paralogue-Specific Sumo-Sim
Recognition
Length = 78
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 13 FINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQL 72
+I L V GQD+ ++F+ + +KKL +YC+++ + FL G R TP +L
Sbjct: 2 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 61
Query: 73 GLKDGDEI 80
G+++ D I
Sbjct: 62 GMEEEDVI 69
>pdb|1TGZ|B Chain B, Structure Of Human Senp2 In Complex With Sumo-1
pdb|3UIP|B Chain B, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 80
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 13 FINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQL 72
+I L V GQD+ ++F+ + +KKL +YC+++ + FL G R TP +L
Sbjct: 4 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 63
Query: 73 GLKDGDEI 80
G+++ D I
Sbjct: 64 GMEEEDVI 71
>pdb|3KYC|D Chain D, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 97
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 13 FINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQL 72
+I L V GQD+ ++F+ + +KKL +YC+++ + FL G R TP +L
Sbjct: 21 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 80
Query: 73 GLKDGDEI 80
G+++ D I
Sbjct: 81 GMEEEDVI 88
>pdb|2K8H|A Chain A, Solution Structure Of Sumo From Trypanosoma Brucei
Length = 110
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%)
Query: 10 DQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTP 69
+ + + V D ++F + +KKL+ TYC+K+ + FL +G +TP
Sbjct: 23 ETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTP 82
Query: 70 DQLGLKDGDEIVATFYAGGA 89
++LG++D D I A G
Sbjct: 83 EELGMEDDDVIDAMVEQTGG 102
>pdb|3RZW|C Chain C, Crystal Structure Of The Monobody Ysmb-9 Bound To Human
Sumo1
pdb|3RZW|D Chain D, Crystal Structure Of The Monobody Ysmb-9 Bound To Human
Sumo1
Length = 99
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 13 FINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQL 72
+I L V GQD+ ++F+ + +KKL +Y +++ + FL G R TP +L
Sbjct: 23 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYAQRQGVPMNSLRFLFEGQRIADNHTPKEL 82
Query: 73 GLKDGDEI 80
G+++ D I
Sbjct: 83 GMEEEDVI 90
>pdb|1WZ0|A Chain A, Solution Structure Of Human Sumo-2 (Smt3b), A Ubiquitin-
Like Protein
Length = 104
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLG 73
INL V GQD + F+ +R + KL+ YCE++ F +G TP QL
Sbjct: 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 84
Query: 74 LKDGDEI 80
++D D I
Sbjct: 85 MEDEDTI 91
>pdb|2IO1|B Chain B, Crystal Structure Of Human Senp2 In Complex With
Presumo-3
pdb|2IO1|D Chain D, Crystal Structure Of Human Senp2 In Complex With
Presumo-3
pdb|2IO1|F Chain F, Crystal Structure Of Human Senp2 In Complex With
Presumo-3
Length = 94
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLG 73
INL V GQD + F+ +R + KL+ YCE++ F +G TP QL
Sbjct: 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 67
Query: 74 LKDGDEI 80
++D D I
Sbjct: 68 MEDEDTI 74
>pdb|2IO3|B Chain B, Crystal Structure Of Human Senp2 In Complex With
Rangap1- Sumo-2
Length = 81
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLG 73
INL V GQD + F+ +R + KL+ YCE++ F +G TP QL
Sbjct: 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 65
Query: 74 LKDGDEI 80
++D D I
Sbjct: 66 MEDEDTI 72
>pdb|2IO0|B Chain B, Crystal Structure Of Human Senp2 In Complex With
Presumo-2
Length = 91
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLG 73
INL V GQD + F+ +R + KL+ YCE++ F +G TP QL
Sbjct: 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 65
Query: 74 LKDGDEI 80
++D D I
Sbjct: 66 MEDEDTI 72
>pdb|2AWT|A Chain A, Solution Structure Of Human Small Ubiquitin-Like
Modifier Protein Isoform 2 (Sumo-2)
Length = 95
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLG 73
INL V GQD + F+ +R + KL+ YCE++ F +G TP QL
Sbjct: 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 77
Query: 74 LKDGDEI 80
++D D I
Sbjct: 78 MEDEDTI 84
>pdb|2D07|B Chain B, Crystal Structure Of Sumo-3-Modified Thymine-Dna
Glycosylase
pdb|2RPQ|A Chain A, Solution Structure Of A Sumo-Interacting Motif Of Mbd1-
Containing Chromatin-Associated Factor 1 Bound To
Sumo-3
Length = 93
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLG 73
INL V GQD + F+ +R + KL+ YCE++ F +G TP QL
Sbjct: 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 77
Query: 74 LKDGDEI 80
++D D I
Sbjct: 78 MEDEDTI 84
>pdb|2CKH|B Chain B, Senp1-sumo2 Complex
Length = 79
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLG 73
INL V GQD + F+ +R + KL+ YCE++ F +G TP QL
Sbjct: 4 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 63
Query: 74 LKDGDEI 80
++D D I
Sbjct: 64 MEDEDTI 70
>pdb|1WM3|A Chain A, Crystal Structure Of Human Sumo-2 Protein
Length = 72
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLG 73
INL V GQD + F+ +R + KL+ YCE++ F +G TP QL
Sbjct: 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 61
Query: 74 LKDGDEI 80
++D D I
Sbjct: 62 MEDEDTI 68
>pdb|3UIN|B Chain B, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
pdb|3UIO|B Chain B, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 80
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLG 73
INL V GQD + F+ +R + KL+ YCE++ F +G TP QL
Sbjct: 5 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 64
Query: 74 LKDGDEI 80
++D D I
Sbjct: 65 MEDEDTI 71
>pdb|2IYD|B Chain B, Senp1 Covalent Complex With Sumo-2
Length = 81
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLG 73
INL V GQD + F+ +R + KL+ YCE++ F +G TP QL
Sbjct: 4 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 63
Query: 74 LKDGDEI 80
++D D I
Sbjct: 64 MEDEDTI 70
>pdb|1WM2|A Chain A, Crystal Structure Of Human Sumo-2 Protein
Length = 78
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLG 73
INL V GQD + F+ +R + KL+ YCE++ F +G TP QL
Sbjct: 7 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 66
Query: 74 LKDGDEI 80
++D D I
Sbjct: 67 MEDEDTI 73
>pdb|2K1F|A Chain A, Sumo-3 From Drosophila Melanogaster (Dsmt3)
Length = 88
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLG 73
INL V GQDN + F+ ++ ++KL+ YC++ F +G TP L
Sbjct: 13 INLKVLGQDNAVVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINENDTPTSLE 72
Query: 74 LKDGDEI 80
+++GD I
Sbjct: 73 MEEGDTI 79
>pdb|1U4A|A Chain A, Solution Structure Of Human Sumo-3 C47s
Length = 87
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%)
Query: 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLG 73
INL V GQD + F+ +R + KL+ Y E++ F +G TP QL
Sbjct: 4 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYSERQGLSMRQIRFRFDGQPINETDTPAQLE 63
Query: 74 LKDGDEI 80
++D D I
Sbjct: 64 MEDEDTI 70
>pdb|3PGE|A Chain A, Structure Of Sumoylated Pcna
Length = 200
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 2 EKSPDNIPDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGN 61
E P+ P+ H INL V ++ ++F+ ++ +++L+ + +++ + + FL +G
Sbjct: 19 EVKPEVKPETH-INLKVSDGSSE-IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 76
Query: 62 RFPHIRTPDQLGLKDGDEIVA 82
R +TP+ L ++D D I A
Sbjct: 77 RIQADQTPEDLDMEDNDIIEA 97
>pdb|2EKE|C Chain C, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|D Chain D, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 106
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 2 EKSPDNIPDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGN 61
E P+ P+ H INL V ++ ++F+ ++ +++L+ + +++ + + FL +G
Sbjct: 21 EVKPEVKPETH-INLKVSDGSSE-IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 78
Query: 62 RFPHIRTPDQLGLKDGDEIVA 82
R +TP+ L ++D D I A
Sbjct: 79 RIQADQTPEDLDMEDNDIIEA 99
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 2 EKSPDNIPDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGN 61
E P+ P+ H INL V ++ ++F+ ++ +++L+ + +++ + + FL +G
Sbjct: 11 EVKPEVKPETH-INLKVSDGSSE-IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 68
Query: 62 RFPHIRTPDQLGLKDGDEIVA 82
R +TP+ L ++D D I A
Sbjct: 69 RIQADQTPEDLDMEDNDIIEA 89
>pdb|1L2N|A Chain A, Smt3 Solution Structure
Length = 101
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 2 EKSPDNIPDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGN 61
E P+ P+ H INL V ++ ++F+ ++ +++L+ + +++ + + FL +G
Sbjct: 13 EVKPEVKPETH-INLKVSDGSSE-IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 70
Query: 62 RFPHIRTPDQLGLKDGDEIVA 82
R +TP+ L ++D D I A
Sbjct: 71 RIQADQTPEDLDMEDNDIIEA 91
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 2 EKSPDNIPDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGN 61
E P+ P+ H INL V ++ ++F+ ++ +++L+ + +++ + + FL +G
Sbjct: 11 EVKPEVKPETH-INLKVSDGSSE-IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 68
Query: 62 RFPHIRTPDQLGLKDGDEIVA 82
R +TP+ L ++D D I A
Sbjct: 69 RIQADQTPEDLDMEDNDIIEA 89
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 2 EKSPDNIPDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGN 61
E P+ P+ H INL V ++ ++F+ ++ +++L+ + +++ + + FL +G
Sbjct: 11 EVKPEVKPETH-INLKVSDGSSE-IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 68
Query: 62 RFPHIRTPDQLGLKDGDEIVA 82
R +TP+ L ++D D I A
Sbjct: 69 RIQADQTPEDLDMEDNDIIEA 89
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 2 EKSPDNIPDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGN 61
E P+ P+ H INL V + ++F+ ++ +++L+ + +++ + + FL +G
Sbjct: 11 EVKPEVKPETH-INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 68
Query: 62 RFPHIRTPDQLGLKDGDEIVA 82
R +TP+ L ++D D I A
Sbjct: 69 RIQADQTPEDLDMEDNDIIEA 89
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 2 EKSPDNIPDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGN 61
E P+ P+ H INL V ++ ++F+ ++ +++L+ + +++ + + FL +G
Sbjct: 11 EVKPEVKPETH-INLKVSDGSSE-IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 68
Query: 62 RFPHIRTPDQLGLKDGDEIVA 82
R +TP+ L ++D D I A
Sbjct: 69 RIQADQTPEDLDMEDNDIIEA 89
>pdb|1EUV|B Chain B, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain
In Complex With Smt3, The Yeast Ortholog Of Sumo
Length = 86
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 2 EKSPDNIPDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGN 61
E P+ P+ H INL V ++ ++F+ ++ +++L+ + +++ + + FL +G
Sbjct: 1 EVKPEVKPETH-INLKVSDGSSE-IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 58
Query: 62 RFPHIRTPDQLGLKDGDEIVA 82
R +TP+ L ++D D I A
Sbjct: 59 RIQADQTPEDLDMEDNDIIEA 79
>pdb|3IX6|A Chain A, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
pdb|3IX6|B Chain B, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
Length = 360
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 2 EKSPDNIPDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGN 61
E P+ P+ H INL V ++ ++F+ ++ +++L+ + +++ + + FL +G
Sbjct: 11 EVKPEVKPETH-INLKVSDGSSE-IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 68
Query: 62 RFPHIRTPDQLGLKDGDEIVA 82
R +TP+ L ++D D I A
Sbjct: 69 RIQADQTPEDLDMEDNDIIEA 89
>pdb|3V7O|A Chain A, Crystal Structure Of The C-Terminal Domain Of Ebola
Virus Vp30 (Strain Reston-89)
pdb|3V7O|B Chain B, Crystal Structure Of The C-Terminal Domain Of Ebola
Virus Vp30 (Strain Reston-89)
Length = 227
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 2 EKSPDNIPDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGN 61
E P+ P+ H INL V ++ ++F+ ++ +++L+ + +++ + + FL +G
Sbjct: 11 EVKPEVKPETH-INLKVSDGSSE-IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 68
Query: 62 RFPHIRTPDQLGLKDGDEIVA 82
R +TP+ L ++D D I A
Sbjct: 69 RIQADQTPEDLDMEDNDIIEA 89
>pdb|3QHT|A Chain A, Crystal Structure Of The Monobody Ysmb-1 Bound To Yeast
Sumo
pdb|3QHT|B Chain B, Crystal Structure Of The Monobody Ysmb-1 Bound To Yeast
Sumo
Length = 98
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 2 EKSPDNIPDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGN 61
E P+ P+ H INL V ++ ++F+ ++ +++L+ + +++ + + FL +G
Sbjct: 13 EVKPEVKPETH-INLKVSDGSSE-IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 70
Query: 62 RFPHIRTPDQLGLKDGDEIVA 82
R +TP+ L ++D D I A
Sbjct: 71 RIQADQTPEDLDMEDNDIIEA 91
>pdb|3V60|A Chain A, Structure Of S. Cerevisiae Pcna Conjugated To Sumo On
Lysine 164
pdb|3V61|A Chain A, Structure Of S. Cerevisiae Pcna Conjugated To Sumo On
Lysine 164
Length = 84
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 9 PDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRT 68
P+ H INL V ++ ++F+ ++ +++L+ + +++ + + FL +G R +T
Sbjct: 6 PETH-INLKVSDGSSE-IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQT 63
Query: 69 PDQLGLKDGDEIVA 82
P+ L ++D D I A
Sbjct: 64 PEDLDMEDNDIIEA 77
>pdb|3TIX|A Chain A, Crystal Structure Of The Chp1-Tas3 Complex Core
pdb|3TIX|C Chain C, Crystal Structure Of The Chp1-Tas3 Complex Core
Length = 207
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 2 EKSPDNIPDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGN 61
E P+ P+ H INL V ++ ++F+ ++ +++L+ + +++ + + FL +G
Sbjct: 47 EVKPEVKPETH-INLKVSDGSSE-IFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGI 104
Query: 62 RFPHIRTPDQLGLKDGDEIVA 82
+TP+ L ++D D I A
Sbjct: 105 EIQADQTPEDLDMEDNDIIEA 125
>pdb|3V62|A Chain A, Structure Of The S. Cerevisiae Srs2 C-Terminal Domain In
Complex With Pcna Conjugated To Sumo On Lysine 164
pdb|3V62|D Chain D, Structure Of The S. Cerevisiae Srs2 C-Terminal Domain In
Complex With Pcna Conjugated To Sumo On Lysine 164
Length = 84
Score = 32.0 bits (71), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 9 PDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRT 68
P+ H INL V ++ ++F +++L+ + ++ + + FL +G R +T
Sbjct: 6 PETH-INLXVSDGSSE-IFFXIXXTTPLRRLMEAFAXRQGXEMDSLRFLYDGIRIQADQT 63
Query: 69 PDQLGLKDGDEIVA 82
P+ L ++D D I A
Sbjct: 64 PEDLDMEDNDIIEA 77
>pdb|2JXX|A Chain A, Nmr Solution Structure Of Ubiquitin-Like Domain Of
Nfatc2ip. Northeast Structural Genomics Consortium
Target Hr5627
Length = 97
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 14 INLVVKGQD-NDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQL 72
+ L V+G++ + L RD +K L+ Y E F +G + P L
Sbjct: 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADL 85
Query: 73 GLKDGDEI 80
G++ GD I
Sbjct: 86 GMESGDLI 93
>pdb|3RD2|A Chain A, Nip45 Sumo-Like Domain 2
Length = 82
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 14 INLVVKGQD-NDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQL 72
+ L V+G++ + L RD +K L+ Y E F +G + P L
Sbjct: 11 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADL 70
Query: 73 GLKDGDEI 80
G++ GD I
Sbjct: 71 GMESGDLI 78
>pdb|3K0Y|A Chain A, Crystal Structure Of Putative Toxin Related Protein
(Yp_001303978.1) From Parabacteroides Distasonis Atcc
8503 At 2.16 A Resolution
Length = 229
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 12 HFINLVVKGQDNDPLYFEFRRD 33
HFINL+ +NDP EFR +
Sbjct: 134 HFINLIQPDAENDPYTLEFRHN 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.144 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,246,703
Number of Sequences: 62578
Number of extensions: 124945
Number of successful extensions: 187
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 143
Number of HSP's gapped (non-prelim): 46
length of query: 89
length of database: 14,973,337
effective HSP length: 56
effective length of query: 33
effective length of database: 11,468,969
effective search space: 378475977
effective search space used: 378475977
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)