Query 048514
Match_columns 89
No_of_seqs 120 out of 524
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 17:43:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048514.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048514hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kyd_D Small ubiquitin-related 100.0 5E-33 1.7E-37 177.7 10.6 81 8-88 35-115 (115)
2 2eke_C Ubiquitin-like protein 100.0 2.3E-32 7.8E-37 172.5 11.2 83 6-89 24-106 (106)
3 2io0_B Small ubiquitin-related 100.0 2E-32 6.7E-37 168.6 10.4 80 10-89 2-81 (91)
4 2d07_B Ubiquitin-like protein 100.0 2.8E-32 9.6E-37 168.2 10.5 81 9-89 13-93 (93)
5 1wz0_A Ubiquitin-like protein 100.0 5.8E-32 2E-36 170.1 9.9 81 9-89 20-100 (104)
6 2io1_B Small ubiquitin-related 100.0 1.5E-31 5.2E-36 165.3 9.9 80 10-89 4-83 (94)
7 2l76_A Nfatc2-interacting prot 100.0 2.6E-31 8.9E-36 164.2 10.2 78 6-84 14-91 (95)
8 2jxx_A Nfatc2-interacting prot 100.0 5.4E-31 1.9E-35 163.9 9.8 80 4-83 16-96 (97)
9 2k8h_A Small ubiquitin protein 100.0 1.8E-31 6.3E-36 169.3 7.8 83 7-89 20-102 (110)
10 3tix_A Ubiquitin-like protein 100.0 6E-31 2.1E-35 180.4 8.9 79 10-89 54-132 (207)
11 3pge_A SUMO-modified prolifera 100.0 4.5E-30 1.5E-34 177.1 10.2 79 10-89 26-104 (200)
12 3a4r_A Nfatc2-interacting prot 100.0 1.7E-29 5.9E-34 151.5 10.0 76 8-83 2-78 (79)
13 1wm3_A Ubiquitin-like protein 100.0 1.6E-29 5.6E-34 149.0 9.2 72 13-84 1-72 (72)
14 3v7o_A Minor nucleoprotein VP3 100.0 1.8E-31 6.2E-36 185.1 0.2 80 9-89 17-96 (227)
15 3uf8_A Ubiquitin-like protein 99.9 2.8E-27 9.7E-32 163.5 9.8 80 9-89 17-96 (209)
16 3ix6_A TS, tsase, thymidylate 99.9 5.7E-28 2E-32 178.2 0.0 79 10-89 18-96 (360)
17 4da1_A Protein phosphatase 1K, 99.9 1.8E-27 6.3E-32 175.7 0.0 79 10-89 27-105 (389)
18 3goe_A DNA repair protein RAD6 99.9 5.2E-24 1.8E-28 127.2 9.9 74 12-85 8-82 (82)
19 2uyz_B Small ubiquitin-related 99.9 7E-22 2.4E-26 116.7 9.2 78 12-89 2-79 (79)
20 1wyw_B Ubiquitin-like protein 99.9 1.2E-21 4E-26 120.7 9.8 81 9-89 17-97 (97)
21 3dbh_I NEDD8; cell cycle, acti 99.7 1.7E-16 5.9E-21 94.6 10.7 82 8-89 7-88 (88)
22 4hcn_B Polyubiquitin, ubiquiti 99.7 2.1E-16 7.2E-21 97.0 9.2 83 7-89 16-98 (98)
23 3n3k_B Ubiquitin; hydrolase, p 99.7 4.5E-16 1.5E-20 92.2 8.9 78 12-89 2-79 (85)
24 1ndd_A NEDD8, protein (ubiquit 99.7 1E-15 3.5E-20 88.5 9.5 76 14-89 1-76 (76)
25 3a9j_A Ubiquitin; protein comp 99.7 1.5E-15 5E-20 87.9 9.9 76 14-89 1-76 (76)
26 3mtn_B UBA80, ubcep1, ubiquiti 99.7 1.8E-15 6.2E-20 89.4 10.1 78 12-89 2-79 (85)
27 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 1.4E-15 4.8E-20 90.7 9.6 80 10-89 4-83 (87)
28 3phx_B Ubiquitin-like protein 99.6 2.9E-15 9.8E-20 88.0 10.7 77 12-88 3-79 (79)
29 3vdz_A Ubiquitin-40S ribosomal 99.6 2.4E-15 8.1E-20 94.4 10.7 80 10-89 32-111 (111)
30 3k9o_B Ubiquitin, UBB+1; E2-25 99.6 4.2E-15 1.4E-19 90.2 9.8 76 14-89 2-77 (96)
31 3v6c_B Ubiquitin; structural g 99.6 1E-14 3.5E-19 88.1 10.8 81 6-86 10-90 (91)
32 2ojr_A Ubiquitin; lanthide-bin 99.6 1.1E-14 3.9E-19 91.1 10.7 78 12-89 34-111 (111)
33 4fbj_B NEDD8; effector-HOST ta 99.6 8.6E-15 2.9E-19 88.2 9.1 76 14-89 1-76 (88)
34 1sif_A Ubiquitin; hydrophobic 99.6 8.1E-15 2.8E-19 88.3 9.0 77 13-89 9-85 (88)
35 2hj8_A Interferon-induced 17 k 99.6 9.2E-15 3.2E-19 88.0 8.2 78 12-89 3-80 (88)
36 2l7r_A Ubiquitin-like protein 99.6 1E-14 3.5E-19 88.8 7.9 78 10-89 16-93 (93)
37 1yx5_B Ubiquitin; proteasome, 99.6 2.9E-14 1E-18 87.1 9.9 76 14-89 1-76 (98)
38 1wy8_A NP95-like ring finger p 99.6 5.5E-14 1.9E-18 84.1 10.6 80 10-89 4-85 (89)
39 1j8c_A Ubiquitin-like protein 99.5 9E-14 3.1E-18 89.1 11.2 79 10-89 29-107 (125)
40 1wx8_A Riken cDNA 4931431F19; 99.5 3.3E-14 1.1E-18 86.5 8.6 79 10-89 14-92 (96)
41 4dwf_A HLA-B-associated transc 99.5 1.1E-13 3.8E-18 83.0 10.8 79 10-89 2-80 (90)
42 3plu_A Ubiquitin-like modifier 99.5 1.1E-13 3.9E-18 85.1 10.5 78 7-84 15-92 (93)
43 3b08_A Polyubiquitin-C, ubiqui 99.5 1.8E-13 6E-18 88.2 10.9 78 12-89 75-152 (152)
44 3rt3_B Ubiquitin-like protein 99.5 2.6E-13 8.8E-18 88.8 10.7 79 11-89 79-157 (159)
45 1wx7_A Ubiquilin 3; ubiquitin- 99.5 3.5E-13 1.2E-17 83.5 10.2 79 10-89 14-92 (106)
46 1ttn_A DC-UBP, dendritic cell- 99.5 2.4E-13 8.1E-18 84.5 9.3 79 10-88 20-98 (106)
47 1yqb_A Ubiquilin 3; structural 99.5 3.9E-13 1.3E-17 82.9 10.0 83 6-89 15-97 (100)
48 2faz_A Ubiquitin-like containi 99.5 5.1E-13 1.7E-17 78.0 10.0 74 13-86 2-77 (78)
49 2dzi_A Ubiquitin-like protein 99.5 4.3E-13 1.5E-17 78.5 9.4 77 10-86 4-80 (81)
50 2bwf_A Ubiquitin-like protein 99.5 6.5E-13 2.2E-17 77.0 9.8 72 14-86 5-76 (77)
51 2kan_A Uncharacterized protein 99.5 5.2E-13 1.8E-17 81.5 9.6 80 9-89 11-91 (94)
52 3l0w_B Monoubiquitinated proli 99.5 5.1E-13 1.7E-17 89.4 9.9 76 14-89 1-76 (169)
53 2kdi_A Ubiquitin, vacuolar pro 99.5 7.2E-13 2.5E-17 83.5 9.8 77 13-89 9-85 (114)
54 4eew_A Large proline-rich prot 99.5 1.2E-12 4.1E-17 78.2 10.2 75 10-85 14-88 (88)
55 1we6_A Splicing factor, putati 99.4 8.7E-13 3E-17 82.4 8.6 79 11-89 25-107 (111)
56 3u30_A Ubiquitin, linear DI-ub 99.4 1.7E-12 5.8E-17 86.1 10.5 81 9-89 16-96 (172)
57 3q3f_A Ribonuclease/ubiquitin 99.4 1.1E-12 3.9E-17 89.4 9.4 77 13-89 105-181 (189)
58 2klc_A Ubiquilin-1; ubiquitin- 99.4 3.9E-12 1.3E-16 78.4 11.0 79 9-88 21-99 (101)
59 2wyq_A HHR23A, UV excision rep 99.4 4E-12 1.4E-16 75.1 10.6 75 12-86 4-81 (85)
60 1wgd_A Homocysteine-responsive 99.4 1.2E-12 4.2E-17 79.2 8.4 80 10-89 4-89 (93)
61 1we7_A SF3A1 protein; structur 99.4 1.5E-12 5.2E-17 81.8 9.0 79 11-89 23-111 (115)
62 3b1l_X E3 ubiquitin-protein li 99.1 2.3E-14 7.8E-19 83.3 0.0 75 14-88 1-75 (76)
63 1uel_A HHR23B, UV excision rep 99.4 4.6E-12 1.6E-16 77.1 10.0 73 14-86 1-76 (95)
64 1uh6_A Ubiquitin-like 5; beta- 99.4 4.3E-12 1.5E-16 78.9 9.5 75 10-84 25-99 (100)
65 3u5e_m 60S ribosomal protein L 99.4 3.7E-14 1.3E-18 90.8 0.0 76 14-89 1-76 (128)
66 3m62_B UV excision repair prot 99.4 2.3E-12 7.8E-17 80.1 7.7 73 14-86 2-74 (106)
67 2kk8_A Uncharacterized protein 99.4 6.2E-12 2.1E-16 75.3 8.9 74 12-85 9-83 (84)
68 3b08_A Polyubiquitin-C, ubiqui 99.3 8.8E-12 3E-16 80.1 9.9 76 14-89 1-76 (152)
69 1wia_A Hypothetical ubiquitin- 99.3 6.7E-12 2.3E-16 76.1 8.7 77 9-88 3-80 (95)
70 3u30_A Ubiquitin, linear DI-ub 99.3 8.2E-12 2.8E-16 82.8 9.5 78 12-89 95-172 (172)
71 4a20_A Ubiquitin-like protein 99.3 1.4E-11 4.6E-16 76.1 9.7 78 9-86 15-96 (98)
72 3u5c_f 40S ribosomal protein S 99.3 1E-13 3.5E-18 91.7 0.0 76 14-89 1-76 (152)
73 2daf_A FLJ35834 protein; hypot 99.3 3.3E-11 1.1E-15 76.8 10.4 77 10-86 12-89 (118)
74 1v5o_A 1700011N24RIK protein; 99.3 1.8E-11 6.3E-16 75.4 8.8 78 12-89 6-88 (102)
75 3m63_B Ubiquitin domain-contai 99.3 5.3E-12 1.8E-16 78.0 4.7 73 12-85 27-99 (101)
76 1v2y_A 3300001G02RIK protein; 99.3 1.6E-11 5.5E-16 76.8 6.7 79 10-88 4-98 (105)
77 1wju_A NEDD8 ultimate buster-1 99.2 4.4E-11 1.5E-15 74.3 8.3 75 13-88 15-93 (100)
78 2gow_A HCG-1 protein, ubiquiti 99.2 1.3E-10 4.4E-15 74.6 9.4 81 9-89 13-103 (125)
79 2lxa_A Ubiquitin-like protein 99.2 5.5E-11 1.9E-15 71.9 6.5 72 14-85 2-77 (87)
80 1se9_A Ubiquitin family; ubiqu 99.2 3.1E-10 1E-14 73.1 9.7 78 12-89 15-106 (126)
81 2kd0_A LRR repeats and ubiquit 99.1 3.6E-10 1.2E-14 67.5 8.8 67 20-86 18-84 (85)
82 4dbg_A Ranbp-type and C3HC4-ty 99.1 5.6E-10 1.9E-14 69.8 9.9 75 11-85 22-99 (105)
83 1x1m_A Ubiquitin-like protein 99.1 2.1E-10 7.2E-15 71.2 7.7 76 11-86 10-100 (107)
84 3rt3_B Ubiquitin-like protein 99.1 5.7E-10 1.9E-14 72.7 9.9 73 14-86 3-77 (159)
85 1wgh_A Ubiquitin-like 3, HCG-1 99.1 1.2E-09 3.9E-14 69.4 10.5 78 10-87 13-100 (116)
86 2fnj_B Transcription elongatio 99.1 5.9E-10 2E-14 71.0 8.8 74 14-89 3-83 (118)
87 2kdb_A Homocysteine-responsive 99.1 3.7E-10 1.3E-14 69.7 7.0 74 10-83 20-99 (99)
88 1wxv_A BAG-family molecular ch 99.1 1.3E-09 4.3E-14 65.6 9.1 74 11-85 5-84 (92)
89 2kjr_A CG11242; UBL, ubiquitin 99.1 2.1E-09 7.1E-14 65.8 9.8 75 9-83 11-93 (95)
90 1wgg_A Ubiquitin carboxyl-term 99.0 1.4E-09 4.6E-14 66.5 8.4 72 11-84 5-77 (96)
91 3ai5_A Yeast enhanced green fl 99.0 1.9E-09 6.3E-14 78.2 10.3 77 10-86 230-306 (307)
92 1v5t_A 8430435I17RIK protein; 99.0 7.4E-10 2.5E-14 66.7 6.7 74 11-85 5-82 (90)
93 4ajy_B Transcription elongatio 99.0 4.8E-09 1.7E-13 66.8 9.6 73 14-87 3-82 (118)
94 1v86_A DNA segment, CHR 7, way 99.0 1.2E-09 4E-14 66.5 6.0 73 11-85 15-87 (95)
95 2kj6_A Tubulin folding cofacto 98.9 7.1E-09 2.4E-13 63.7 8.2 75 10-84 11-94 (97)
96 1wf9_A NPL4 family protein; be 98.9 2.4E-09 8.1E-14 66.5 6.1 73 12-85 6-94 (107)
97 2xzm_9 RPS31E; ribosome, trans 98.9 1.7E-10 5.8E-15 78.7 0.0 71 14-89 1-71 (189)
98 1oqy_A HHR23A, UV excision rep 98.9 3.3E-09 1.1E-13 78.4 6.6 79 11-89 5-87 (368)
99 1v6e_A Cytoskeleton-associated 98.9 1.4E-08 4.8E-13 61.6 7.9 72 13-84 7-86 (95)
100 1t0y_A Tubulin folding cofacto 98.9 2.9E-08 1E-12 62.8 9.6 73 12-84 5-85 (122)
101 2dzj_A Synaptic glycoprotein S 98.8 1.7E-08 5.9E-13 60.7 7.7 72 11-82 8-85 (88)
102 4b6w_A Tubulin-specific chaper 98.8 3.3E-08 1.1E-12 59.4 7.5 71 14-84 3-82 (86)
103 2kzr_A Ubiquitin thioesterase 98.8 9.2E-09 3.1E-13 61.3 4.7 71 14-85 1-77 (86)
104 1wjn_A Tubulin-folding protein 98.6 3.2E-07 1.1E-11 55.6 9.1 76 10-85 6-92 (97)
105 3shq_A UBLCP1; phosphatase, hy 98.5 4.2E-07 1.4E-11 66.0 7.5 74 11-85 3-79 (320)
106 2dzm_A FAS-associated factor 1 98.5 6.7E-07 2.3E-11 55.2 7.3 71 14-85 10-81 (100)
107 2pjh_A Protein NPL4, nuclear p 98.1 1.8E-06 6.1E-11 51.1 3.2 70 13-83 4-78 (80)
108 2al3_A TUG long isoform; TUG U 98.1 1.8E-05 6.1E-10 48.1 7.0 72 13-84 9-80 (90)
109 2bps_A YUKD protein; ubiquitin 97.6 0.00047 1.6E-08 40.9 7.2 71 12-82 3-80 (81)
110 4efo_A Serine/threonine-protei 97.4 0.00091 3.1E-08 40.7 7.6 52 13-64 12-64 (94)
111 3qx1_A FAS-associated factor 1 97.3 0.0042 1.4E-07 36.3 8.8 73 10-83 4-81 (84)
112 2daj_A KIAA0977 protein, COBL- 97.2 0.0012 4.1E-08 39.7 5.9 65 12-76 9-76 (91)
113 1ryj_A Unknown; beta/alpha pro 97.1 0.0098 3.3E-07 33.7 8.8 67 13-89 4-70 (70)
114 3rpf_C Molybdopterin convertin 96.9 0.0071 2.4E-07 34.5 7.2 57 28-89 16-74 (74)
115 3jyu_A Ubiquitin carboxyl-term 96.7 0.0079 2.7E-07 41.4 7.8 73 13-85 139-220 (231)
116 1wj4_A KIAA0794 protein; UBX d 96.7 0.019 6.5E-07 36.1 8.9 73 10-83 40-117 (124)
117 4a3p_A Ubiquitin carboxyl-term 96.6 0.0056 1.9E-07 41.8 6.3 77 13-89 127-212 (217)
118 2cr5_A Reproduction 8; UBX dom 96.6 0.023 8E-07 34.8 8.5 72 11-83 21-96 (109)
119 2dzk_A UBX domain-containing p 96.4 0.071 2.4E-06 32.6 9.7 75 10-84 10-89 (109)
120 1tyg_B YJBS; alpha beta barrel 96.3 0.012 4.1E-07 35.1 5.7 68 12-89 19-87 (87)
121 2kc2_A Talin-1, F1; FERM, adhe 96.2 0.02 6.7E-07 36.6 6.5 69 15-83 13-120 (128)
122 1f0z_A THis protein; ubiquitin 95.9 0.02 6.8E-07 31.8 5.0 61 22-89 6-66 (66)
123 1oey_A P67-PHOX, neutrophil cy 95.7 0.044 1.5E-06 32.5 6.2 49 11-61 3-51 (83)
124 3po0_A Small archaeal modifier 95.7 0.092 3.2E-06 30.4 7.6 61 24-89 18-89 (89)
125 2kvr_A Ubiquitin carboxyl-term 95.6 0.014 4.8E-07 37.1 3.9 62 4-65 21-97 (130)
126 2kl0_A Putative thiamin biosyn 95.3 0.019 6.4E-07 33.0 3.4 60 22-89 6-65 (73)
127 2l32_A Small archaeal modifier 95.2 0.09 3.1E-06 30.1 6.1 56 24-89 11-66 (74)
128 1h4r_A Merlin; FERM, neurofibr 95.1 0.31 1E-05 34.2 10.0 68 10-78 19-91 (314)
129 2k5p_A THis protein, thiamine- 94.9 0.036 1.2E-06 32.2 3.8 63 22-89 6-69 (78)
130 1vd2_A Protein kinase C, IOTA 94.8 0.26 8.8E-06 29.4 7.6 50 9-59 2-52 (89)
131 1vjk_A Molybdopterin convertin 94.7 0.22 7.6E-06 29.5 7.3 61 24-89 27-98 (98)
132 2cu3_A Unknown function protei 94.7 0.069 2.4E-06 29.4 4.7 60 22-89 5-64 (64)
133 1fm0_D Molybdopterin convertin 94.7 0.084 2.9E-06 29.9 5.2 59 25-89 18-81 (81)
134 2q5w_D Molybdopterin convertin 94.6 0.073 2.5E-06 30.0 4.7 59 25-89 17-77 (77)
135 1y8x_B Ubiquitin-activating en 94.3 0.063 2.1E-06 32.7 4.2 59 25-83 6-82 (98)
136 2g1e_A Hypothetical protein TA 94.2 0.29 9.8E-06 28.1 6.8 61 28-89 19-90 (90)
137 1j0g_A Hypothetical protein 18 93.9 0.19 6.6E-06 29.8 5.5 74 12-85 9-86 (92)
138 1s3s_G P47 protein; AAA ATPase 93.8 0.58 2E-05 29.2 8.1 71 11-81 50-124 (127)
139 3dwg_C 9.5 kDa culture filtrat 92.9 0.4 1.4E-05 27.9 5.9 60 28-89 21-93 (93)
140 2ylm_A Ubiquitin carboxyl-term 92.6 0.31 1.1E-05 37.2 6.4 74 11-84 128-216 (530)
141 2ylm_A Ubiquitin carboxyl-term 92.6 0.15 5.2E-06 38.9 4.7 37 26-62 38-74 (530)
142 1ef1_A Moesin; membrane, FERM 92.1 1.4 4.8E-05 30.3 8.8 61 13-74 1-67 (294)
143 1rws_A Hypothetical protein PF 91.3 0.14 5E-06 29.1 2.5 53 28-89 25-77 (77)
144 2hj1_A Hypothetical protein; s 91.1 1.4 4.6E-05 26.5 6.9 69 12-85 11-85 (97)
145 1wz3_A Autophagy 12B, ATG12B, 91.1 0.46 1.6E-05 28.6 4.8 65 6-72 6-75 (96)
146 2qjl_A URM1, ubiquitin-related 91.1 1.3 4.5E-05 26.1 6.8 62 24-89 20-99 (99)
147 3u7z_A Putative metal binding 90.7 1.2 4.2E-05 27.0 6.5 75 9-85 4-98 (101)
148 2i1j_A Moesin; FERM, coiled-co 89.7 2.9 0.0001 32.2 9.3 66 11-77 2-73 (575)
149 3qij_A Protein 4.1; cytoskelet 89.4 0.96 3.3E-05 31.6 6.0 51 8-58 12-63 (296)
150 2inc_C TOUB protein; DIIRON, 4 89.1 2.2 7.7E-05 25.1 7.6 60 26-85 15-82 (83)
151 3ivf_A Talin-1; FERM domain, c 89.1 4.4 0.00015 28.9 9.4 48 11-58 83-131 (371)
152 3w1s_C Ubiquitin-like protein 88.9 1.8 6.3E-05 25.7 6.1 61 10-72 5-70 (91)
153 2juo_A GA-binding protein alph 88.5 2.5 8.5E-05 25.1 6.4 59 27-85 6-64 (89)
154 2l52_A Methanosarcina acetivor 87.9 1.6 5.6E-05 25.7 5.5 56 33-89 27-99 (99)
155 3ivf_A Talin-1; FERM domain, c 87.6 5.9 0.0002 28.3 9.3 71 13-84 3-83 (371)
156 1ip9_A BEM1 protein; ubiquitin 85.1 4.2 0.00014 24.0 6.9 51 9-61 8-58 (85)
157 3ge3_C Toluene-4-monooxygenase 83.8 4.8 0.00017 23.7 6.5 60 26-85 17-83 (84)
158 1v8c_A MOAD related protein; r 83.3 2.9 9.8E-05 27.3 5.4 59 29-89 19-87 (168)
159 4gdk_A Ubiquitin-like protein 83.0 3.5 0.00012 24.4 5.2 70 11-81 3-82 (91)
160 3hvz_A Uncharacterized protein 82.4 4.6 0.00016 23.1 5.5 62 15-85 7-68 (78)
161 2kmm_A Guanosine-3',5'-BIS(dip 82.3 3.3 0.00011 22.4 4.8 62 15-85 2-63 (73)
162 1wgk_A Riken cDNA 2900073H19 p 81.6 6.9 0.00024 23.8 6.9 74 12-89 10-108 (114)
163 3pvl_A Myosin VIIA isoform 1; 78.9 8.3 0.00028 30.1 7.4 48 11-58 261-309 (655)
164 1q1o_A Cell division control p 78.4 3.9 0.00013 24.7 4.3 48 12-59 4-63 (98)
165 3au4_A Myosin-X; protein-prote 75.7 13 0.00044 28.0 7.5 49 11-59 214-264 (555)
166 3h9d_A ATG8, microtubule-assoc 72.4 14 0.00049 22.7 6.1 62 11-72 29-97 (119)
167 2fpe_A C-JUN-amino-terminal ki 72.3 3.9 0.00013 21.5 3.0 20 67-86 15-34 (62)
168 1gcq_C VAV proto-oncogene; SH3 71.9 1.7 5.9E-05 23.5 1.5 20 66-85 21-40 (70)
169 2lj0_A Sorbin and SH3 domain-c 70.8 4.3 0.00015 22.1 3.0 21 66-86 17-37 (65)
170 3rui_B Autophagy-related prote 69.9 17 0.00056 22.4 6.0 62 11-72 28-96 (118)
171 1jo8_A ABP1P, actin binding pr 69.4 4.6 0.00016 20.9 2.8 21 67-87 12-32 (58)
172 2j05_A RAS GTPase-activating p 69.3 5.5 0.00019 21.1 3.2 21 67-87 18-38 (65)
173 1zuy_A Myosin-5 isoform; SH3 d 68.3 6.7 0.00023 20.1 3.3 21 66-86 12-32 (58)
174 2nvu_B Maltose binding protein 67.4 11 0.00036 29.7 5.6 59 25-83 713-789 (805)
175 1zx6_A YPR154WP; SH3 domain, p 66.7 6.5 0.00022 20.3 3.1 21 67-87 14-34 (58)
176 2zjd_A Microtubule-associated 66.3 21 0.00073 22.3 7.1 62 11-72 33-103 (130)
177 2bz8_A SH3-domain kinase bindi 66.0 5.9 0.0002 20.4 2.8 21 67-87 13-33 (58)
178 3m95_A Autophagy related prote 65.3 21 0.00071 22.2 5.6 62 11-72 34-102 (125)
179 1w70_A Neutrophil cytosol fact 64.9 7.1 0.00024 20.3 3.0 21 67-87 16-36 (60)
180 1uti_A GRB2-related adaptor pr 64.9 6.5 0.00022 20.2 2.8 20 67-86 13-32 (58)
181 2fpf_A C-JUN-amino-terminal ki 64.2 7 0.00024 21.1 3.0 20 67-86 18-37 (71)
182 1tg0_A BBC1 protein, myosin ta 64.2 7.4 0.00025 20.8 3.1 20 67-86 19-38 (68)
183 2g6f_X RHO guanine nucleotide 64.1 7.4 0.00025 20.1 3.0 21 67-87 16-36 (59)
184 1uj0_A Signal transducing adap 63.8 6.8 0.00023 20.5 2.8 21 67-87 17-37 (62)
185 2npt_A Dual specificity mitoge 63.5 22 0.00075 21.5 6.7 60 9-83 10-71 (106)
186 2ebp_A SAM and SH3 domain-cont 63.5 6.6 0.00023 21.5 2.8 20 67-86 23-42 (73)
187 1g2b_A Spectrin alpha chain; c 63.3 6.8 0.00023 20.6 2.8 22 67-88 33-54 (62)
188 2nwm_A Vinexin; cell adhesion; 63.2 6.9 0.00024 21.0 2.8 20 67-86 13-32 (65)
189 2vwf_A Growth factor receptor- 62.9 7.4 0.00025 19.9 2.8 20 67-86 14-33 (58)
190 1y0m_A 1-phosphatidylinositol- 62.8 7.3 0.00025 20.3 2.8 20 67-86 15-34 (61)
191 1tuc_A Alpha-spectrin; capping 62.8 7.3 0.00025 20.6 2.8 20 68-87 2-21 (63)
192 2dhz_A RAP guanine nucleotide 62.7 14 0.00047 23.0 4.4 55 10-64 6-69 (120)
193 1yn8_A NBP2, NAP1-binding prot 62.3 8.2 0.00028 19.8 2.9 20 67-86 13-32 (59)
194 2j6f_A CD2-associated protein; 62.0 8.4 0.00029 20.1 3.0 19 67-85 13-31 (62)
195 1k4u_S Phagocyte NADPH oxidase 61.6 8.6 0.0003 20.0 3.0 21 67-87 17-37 (62)
196 2gnc_A SLIT-ROBO RHO GTPase-ac 61.5 8.3 0.00028 20.0 2.9 20 67-86 18-37 (60)
197 1cka_A C-CRK N-terminal SH3 do 61.5 7.7 0.00026 19.8 2.7 20 67-86 13-32 (57)
198 2ew3_A SH3-containing GRB2-lik 61.5 8.6 0.0003 20.7 3.0 21 67-87 15-35 (68)
199 2xmf_A Myosin 1E SH3; motor pr 61.2 9 0.00031 19.8 3.0 20 67-86 17-36 (60)
200 1sem_A SEM-5; SRC-homology 3 ( 60.6 8.2 0.00028 19.8 2.7 20 67-86 14-33 (58)
201 2eyz_A V-CRK sarcoma virus CT1 60.5 25 0.00086 24.4 6.0 70 12-86 45-165 (304)
202 1zlm_A Osteoclast stimulating 60.2 8.6 0.00029 19.8 2.8 20 67-86 15-34 (58)
203 2o9s_A Ponsin; SH3 domain, sig 59.9 9.6 0.00033 20.2 3.0 20 67-86 18-37 (67)
204 2bzy_A CRK-like protein, CRKL 59.9 9.4 0.00032 20.3 3.0 20 68-87 16-35 (67)
205 3o27_A Putative uncharacterize 59.5 4.9 0.00017 22.7 1.7 22 68-89 33-54 (68)
206 1wxm_A A-RAF proto-oncogene se 59.2 25 0.00084 20.7 7.9 66 15-83 9-78 (86)
207 4e6r_A Cytoplasmic protein NCK 59.2 11 0.00036 19.2 3.0 20 67-86 13-32 (58)
208 1ruw_A Myosin-3 isoform, MYO3; 59.0 12 0.00041 19.9 3.3 22 66-87 14-35 (69)
209 1wfy_A Regulator of G-protein 58.8 9.9 0.00034 23.2 3.1 52 12-63 15-67 (104)
210 1wgr_A Growth factor receptor- 58.8 27 0.00091 20.9 5.6 42 10-51 6-47 (100)
211 2dl4_A Protein STAC; SH3 domai 58.7 10 0.00035 20.2 3.0 20 67-86 19-38 (68)
212 1ue9_A Intersectin 2; beta bar 58.7 12 0.0004 20.6 3.3 20 67-86 19-38 (80)
213 3c0c_A Endophilin-A2; endocyto 58.6 10 0.00035 20.5 3.0 21 67-87 25-45 (73)
214 2eyx_A V-CRK sarcoma virus CT1 58.4 8.6 0.00029 20.5 2.6 20 68-87 21-40 (67)
215 2oaw_A Spectrin alpha chain, b 58.2 9.4 0.00032 19.9 2.8 20 67-86 13-32 (65)
216 2fei_A CD2-associated protein; 58.2 5.6 0.00019 21.4 1.8 19 67-85 13-31 (65)
217 2djq_A SH3 domain containing r 57.6 11 0.00039 19.9 3.0 19 67-85 19-37 (68)
218 1w1f_A Tyrosine-protein kinase 57.5 11 0.00036 19.8 2.9 20 67-86 19-38 (65)
219 2dl3_A Sorbin and SH3 domain-c 57.5 9.8 0.00033 20.2 2.8 20 67-86 19-38 (68)
220 2lcs_A NAP1-binding protein 2; 57.4 11 0.00039 20.5 3.1 20 67-86 17-36 (73)
221 2drm_A Acanthamoeba myosin IB; 57.2 10 0.00036 19.3 2.8 20 67-86 15-34 (58)
222 2k9i_A Plasmid PRN1, complete 57.0 9.1 0.00031 19.4 2.5 30 24-53 8-37 (55)
223 2cuc_A SH3 domain containing r 56.9 11 0.00038 20.0 2.9 20 67-86 19-38 (70)
224 2dmo_A Neutrophil cytosol fact 56.7 11 0.00036 20.2 2.8 20 67-86 19-38 (68)
225 2r2q_A Gamma-aminobutyric acid 56.6 30 0.001 20.8 6.6 62 11-72 25-93 (110)
226 2bkf_A Zinc-finger protein NBR 56.6 28 0.00095 20.5 6.4 44 12-58 5-50 (87)
227 2dbk_A CRK-like protein; struc 56.5 11 0.00039 21.2 3.1 19 68-86 31-49 (88)
228 2ak5_A RHO guanine nucleotide 56.3 11 0.00037 19.7 2.8 20 67-86 18-37 (64)
229 1x2p_A Protein arginine N-meth 56.1 12 0.00042 19.8 3.0 20 67-86 19-38 (68)
230 1x2k_A OSTF1, osteoclast stimu 55.9 12 0.00041 19.9 3.0 20 67-86 19-38 (68)
231 2oyn_A Hypothetical protein MJ 55.3 6 0.00021 25.5 1.8 16 71-86 119-134 (146)
232 2dl8_A SLIT-ROBO RHO GTPase-ac 55.2 12 0.0004 20.2 2.9 20 67-86 21-40 (72)
233 2i0n_A Class VII unconventiona 55.2 9.5 0.00032 21.1 2.5 21 67-87 22-42 (80)
234 1v1c_A Obscurin; muscle, sarco 55.2 14 0.00049 20.9 3.2 22 66-87 18-39 (71)
235 2l66_A SSO7C4, transcriptional 54.9 8.9 0.00031 19.9 2.2 23 63-85 15-37 (53)
236 2l05_A Serine/threonine-protei 54.8 32 0.0011 20.6 9.3 66 15-83 19-88 (95)
237 1x6b_A RHO guanine exchange fa 54.6 11 0.00037 20.8 2.7 19 67-85 29-47 (79)
238 1wj6_A KIAA0049 protein, RSGI 54.4 33 0.0011 20.7 5.3 52 11-65 12-68 (101)
239 1yfb_A Transition state regula 54.2 8.9 0.00031 20.7 2.2 27 59-85 21-47 (59)
240 2ed0_A ABL interactor 2; coile 53.5 13 0.00045 20.4 3.0 21 67-87 29-49 (78)
241 2yuo_A CIP85, RUN and TBC1 dom 53.5 12 0.00041 20.5 2.8 20 67-86 19-38 (78)
242 3u23_A CD2-associated protein; 53.3 14 0.00047 19.2 2.9 20 67-86 19-38 (65)
243 1wgy_A RAP guanine nucleotide 53.3 35 0.0012 20.6 5.5 74 10-83 6-84 (104)
244 2kxd_A 11-MER peptide, SH3 dom 53.1 12 0.0004 20.3 2.7 20 68-87 12-31 (73)
245 1eo6_A GATE-16, golgi-associat 53.1 36 0.0012 20.7 6.7 62 11-72 26-94 (117)
246 2ct3_A Vinexin; SH3 domian, st 52.8 12 0.00041 19.9 2.6 20 67-86 19-38 (70)
247 1x69_A Cortactin isoform A; SH 52.7 17 0.00057 19.9 3.3 21 67-87 29-49 (79)
248 2dil_A Proline-serine-threonin 52.4 13 0.00043 19.8 2.7 19 67-85 20-38 (69)
249 1gl5_A Tyrosine-protein kinase 52.3 13 0.00045 19.7 2.7 20 67-86 14-33 (67)
250 2ke9_A Caskin-2; SH3 domain, A 52.1 8.1 0.00028 21.8 1.9 20 67-86 31-50 (83)
251 2ega_A SH3 and PX domain-conta 52.0 9.6 0.00033 20.4 2.2 20 67-86 20-39 (70)
252 2a28_A BZZ1 protein; SH3 domai 51.9 12 0.00041 18.8 2.4 20 67-86 12-31 (54)
253 3ulr_B SRC substrate cortactin 51.6 14 0.00049 19.2 2.8 20 67-86 21-40 (65)
254 2lx7_A GAS-7, growth arrest-sp 51.5 8.1 0.00028 20.7 1.7 19 68-86 16-35 (60)
255 2ecz_A Sorbin and SH3 domain-c 51.3 9.9 0.00034 20.3 2.1 20 67-86 19-38 (70)
256 1b07_A Protein (proto-oncogene 51.3 16 0.00056 19.3 3.0 20 67-86 15-34 (65)
257 2ydl_A SH3 domain-containing k 51.3 14 0.00047 20.0 2.7 20 67-86 14-33 (69)
258 2l0a_A STAM-1, signal transduc 51.2 15 0.00051 20.2 2.9 20 67-86 29-48 (72)
259 2v1q_A SLA1, cytoskeleton asse 51.2 14 0.00048 18.9 2.7 19 67-85 14-32 (60)
260 3cqt_A P59-FYN, proto-oncogene 50.8 13 0.00045 20.6 2.7 20 67-86 17-36 (79)
261 4esr_A Jouberin; AHI-1, AHI1, 50.7 17 0.00059 19.2 3.1 20 67-86 18-37 (69)
262 2pqh_A Spectrin alpha chain, b 50.7 14 0.00049 20.3 2.8 20 67-86 14-33 (80)
263 4f14_A Nebulette; SH3 domain, 50.7 18 0.0006 18.6 3.1 20 67-86 18-37 (64)
264 2ekh_A SH3 and PX domain-conta 50.5 15 0.00052 20.2 2.9 20 67-86 20-39 (80)
265 1oot_A Hypothetical 40.4 kDa p 50.2 16 0.00053 18.8 2.8 20 67-86 15-34 (60)
266 2ed1_A 130 kDa phosphatidylino 50.0 10 0.00036 20.7 2.1 19 67-85 22-40 (76)
267 1neg_A Spectrin alpha chain, b 49.3 15 0.00051 20.7 2.8 21 67-87 29-49 (83)
268 2dnu_A RUH-061, SH3 multiple d 49.1 11 0.00038 20.1 2.1 20 66-85 19-38 (71)
269 2jt4_A Cytoskeleton assembly c 49.0 15 0.00051 19.5 2.6 19 67-85 18-36 (71)
270 1csk_A C-SRC SH3 domain; phosp 48.9 16 0.00054 19.5 2.7 18 67-84 23-40 (71)
271 3ngp_A Spectrin alpha chain, b 48.8 17 0.00059 18.6 2.8 21 66-86 17-37 (62)
272 1pqs_A Cell division control p 48.8 15 0.0005 21.0 2.6 34 25-58 3-41 (77)
273 1x2q_A Signal transducing adap 48.5 17 0.00057 20.4 2.9 20 67-86 29-48 (88)
274 2yun_A Nostrin; nitric oxide s 48.4 16 0.00055 20.0 2.8 20 67-86 19-38 (79)
275 1k1z_A VAV; SH3, proto-oncogen 48.3 16 0.00053 20.0 2.7 18 69-86 32-49 (78)
276 3h0h_A Proto-oncogene tyrosine 47.7 17 0.00057 19.4 2.7 20 67-86 27-46 (73)
277 1k3e_A CEST; chaperone, secret 47.4 25 0.00084 22.8 3.8 29 33-61 2-36 (156)
278 1wi7_A SH3-domain kinase bindi 47.1 8.1 0.00028 20.6 1.3 20 67-86 19-38 (68)
279 4dxe_H ACP, acyl carrier prote 47.0 24 0.00081 20.6 3.5 44 24-76 16-60 (101)
280 3qwx_X Cell death abnormality 46.9 51 0.0017 20.6 6.8 71 11-86 46-149 (174)
281 2yup_A Vinexin; sorbin and SH3 46.5 13 0.00045 21.0 2.2 19 67-85 29-47 (90)
282 1aww_A ATK, AMGX1, BPK, bruton 46.3 10 0.00036 20.0 1.7 20 67-86 20-39 (67)
283 1spk_A RSGI RUH-010, riken cDN 46.3 13 0.00044 19.9 2.1 19 67-85 20-38 (72)
284 2d8j_A FYN-related kinase; SH3 46.3 14 0.00046 20.0 2.2 20 67-86 19-38 (77)
285 1ri9_A FYN-binding protein; SH 46.3 8 0.00027 23.5 1.3 21 66-86 52-72 (102)
286 2eqi_A Phospholipase C, gamma 46.1 8.6 0.00029 20.5 1.3 20 67-86 19-38 (69)
287 2epd_A RHO GTPase-activating p 45.4 14 0.00047 20.2 2.1 20 67-86 22-41 (76)
288 3eg3_A Proto-oncogene tyrosine 45.4 24 0.00081 18.1 3.0 20 67-86 17-36 (63)
289 4glm_A Dynamin-binding protein 45.3 23 0.0008 18.7 3.1 20 67-86 25-44 (72)
290 2jte_A CD2-associated protein; 45.1 16 0.00053 19.1 2.3 19 67-85 18-36 (64)
291 1j3t_A Intersectin 2; beta bar 45.0 22 0.00076 19.1 3.0 20 67-86 22-41 (74)
292 2kgt_A Tyrosine-protein kinase 44.9 15 0.00051 19.6 2.2 18 67-85 22-39 (72)
293 3i5r_A Phosphatidylinositol 3- 44.9 15 0.00052 20.3 2.3 18 67-84 17-34 (83)
294 2al6_A Focal adhesion kinase 1 44.7 38 0.0013 24.2 4.9 55 16-70 10-75 (375)
295 2x3w_D Syndapin I, protein kin 44.7 14 0.00049 18.9 2.0 20 67-86 15-34 (60)
296 3thk_A Spectrin alpha chain, b 44.6 21 0.00072 19.0 2.8 21 66-86 16-36 (73)
297 1i07_A Epidermal growth factor 44.5 13 0.00043 19.2 1.8 19 67-85 13-31 (60)
298 3o5z_A Phosphatidylinositol 3- 44.0 16 0.00054 20.8 2.3 17 67-83 23-39 (90)
299 2cre_A HEF-like protein; SH3 d 43.8 17 0.00058 19.3 2.3 20 67-86 19-38 (71)
300 2gqi_A RAS GTPase-activating p 43.8 7.3 0.00025 21.0 0.8 20 67-86 20-39 (71)
301 2cub_A Cytoplasmic protein NCK 43.8 22 0.00075 20.0 2.9 21 66-86 28-48 (88)
302 1zuu_A BZZ1 protein; SH3 domai 43.7 17 0.00058 18.4 2.2 20 67-86 13-32 (58)
303 1wxb_A Epidermal growth factor 43.6 17 0.00057 19.3 2.3 19 67-85 19-37 (68)
304 2ysq_A RHO guanine nucleotide 43.6 23 0.0008 19.4 3.0 20 67-86 22-41 (81)
305 2kxc_A Brain-specific angiogen 43.6 14 0.00046 19.5 1.9 18 67-84 19-36 (67)
306 2ki8_A Tungsten formylmethanof 43.6 6.9 0.00024 24.6 0.7 19 66-84 59-77 (146)
307 1x6g_A Megakaryocyte-associate 43.5 21 0.00073 19.7 2.8 20 67-86 29-48 (81)
308 2da9_A SH3-domain kinase bindi 43.4 21 0.00071 18.9 2.7 19 67-85 19-37 (70)
309 2k9g_A SH3 domain-containing k 43.2 22 0.00075 19.0 2.8 19 67-85 21-39 (73)
310 1wyx_A CRK-associated substrat 43.0 19 0.00064 19.1 2.4 20 67-86 15-34 (69)
311 2iim_A Proto-oncogene tyrosine 42.8 20 0.00067 18.6 2.4 19 67-85 18-36 (62)
312 2dbm_A SH3-containing GRB2-lik 42.8 12 0.00041 20.2 1.6 20 67-86 19-38 (73)
313 1s1n_A Nephrocystin 1; beta ba 42.7 12 0.00041 19.8 1.6 20 67-86 22-41 (68)
314 1m1s_A WR4; structural genomic 42.7 34 0.0012 20.9 3.8 26 10-35 23-48 (116)
315 3u52_E Phenol hydroxylase comp 42.4 60 0.002 20.1 6.4 60 24-83 38-107 (119)
316 2k2m_A EPS8-like protein 1; al 42.3 22 0.00077 18.8 2.7 19 67-85 20-38 (68)
317 2kel_A SVTR protein, uncharact 42.3 22 0.00074 18.9 2.5 32 22-53 10-41 (56)
318 2gmq_A Hypothetical protein EF 41.7 26 0.00089 21.3 3.0 70 12-81 21-93 (118)
319 2dl7_A KIAA0769 protein; SH3 d 41.6 24 0.0008 18.9 2.7 19 67-85 20-38 (73)
320 1wxt_A Hypothetical protein FL 41.3 21 0.00072 18.9 2.4 19 67-85 19-37 (68)
321 3pvl_A Myosin VIIA isoform 1; 41.2 42 0.0014 26.1 4.9 70 15-85 537-606 (655)
322 1u5s_A Cytoplasmic protein NCK 41.1 20 0.00068 19.0 2.3 19 67-85 18-36 (71)
323 2oi3_A Tyrosine-protein kinase 40.6 29 0.00099 19.1 3.1 20 67-86 37-56 (86)
324 1uhf_A Intersectin 2; beta bar 40.5 21 0.0007 19.0 2.3 19 67-85 20-38 (69)
325 2dlp_A KIAA1783 protein; SH3 d 40.4 18 0.00061 20.1 2.1 19 67-85 20-38 (85)
326 2yuq_A Tyrosine-protein kinase 39.9 22 0.00075 19.7 2.5 20 67-86 31-50 (85)
327 2e5k_A Suppressor of T-cell re 39.5 16 0.00055 20.7 1.8 20 66-85 27-46 (94)
328 2ct4_A CDC42-interacting prote 39.2 23 0.00077 18.8 2.4 20 67-86 19-38 (70)
329 1uhc_A KIAA1010 protein; beta 38.6 28 0.00096 18.9 2.8 20 67-86 25-44 (79)
330 1tt5_B Ubiquitin-activating en 38.3 9.9 0.00034 28.2 0.9 57 27-83 344-418 (434)
331 2jw4_A Cytoplasmic protein NCK 38.3 32 0.0011 18.4 2.9 19 67-85 19-37 (72)
332 1x43_A Endophilin B1, SH3 doma 38.3 25 0.00086 19.3 2.5 19 67-85 29-47 (81)
333 2cud_A SRC-like-adapter; SH3 d 38.2 30 0.001 19.0 2.8 18 67-84 29-46 (79)
334 2b86_A Cytoplasmic protein NCK 38.2 33 0.0011 18.4 3.0 19 67-85 16-34 (67)
335 1wie_A RIM binding protein 2; 38.2 37 0.0013 19.3 3.3 15 69-83 37-51 (96)
336 3rnj_A Brain-specific angiogen 38.1 24 0.00081 18.5 2.3 17 68-84 21-37 (67)
337 1bb9_A Amphiphysin 2; transfer 38.0 22 0.00076 21.3 2.4 18 67-84 56-73 (115)
338 1wx6_A Cytoplasmic protein NCK 37.8 32 0.0011 19.2 3.0 19 67-85 29-47 (91)
339 2gw6_A TRNA-splicing endonucle 37.6 51 0.0018 20.2 4.1 22 10-31 101-122 (123)
340 3c12_A FLGD, flagellar protein 37.5 58 0.002 19.9 4.4 37 10-62 37-74 (138)
341 3hwu_A Putative DNA-binding pr 37.4 65 0.0022 20.0 4.7 33 22-54 11-43 (147)
342 4ag1_C Fynomer; hydrolase-de n 37.3 27 0.00092 19.5 2.6 20 67-86 18-37 (84)
343 3r6o_A 2-hydroxyhepta-2,4-dien 37.2 94 0.0032 22.3 5.9 69 10-88 234-312 (329)
344 1uff_A Intersectin 2; beta bar 37.1 20 0.00067 20.4 2.0 20 67-86 17-36 (93)
345 2egc_A SH3 and PX domain-conta 36.9 26 0.0009 18.9 2.4 18 69-86 23-40 (75)
346 2cpg_A REPA protein, transcrip 36.7 27 0.00091 16.8 2.2 26 27-52 4-29 (45)
347 3onh_A Ubiquitin-activating en 36.6 78 0.0027 19.8 5.2 50 34-83 20-77 (127)
348 1zps_A PRA-CH, phosphoribosyl- 36.3 25 0.00086 22.4 2.5 76 11-89 21-100 (138)
349 2jxb_A T-cell surface glycopro 36.2 30 0.001 19.3 2.7 19 67-85 43-61 (86)
350 1ujy_A RHO guanine nucleotide 35.9 14 0.00049 20.0 1.2 19 67-85 22-40 (76)
351 2dm1_A Protein VAV-2; RHO fami 35.9 18 0.00062 19.5 1.6 20 67-86 19-38 (73)
352 3cta_A Riboflavin kinase; stru 35.9 20 0.00068 23.6 2.1 19 70-88 206-224 (230)
353 2rf0_A Mitogen-activated prote 35.8 32 0.0011 19.5 2.8 19 67-85 41-59 (89)
354 3ebr_A Uncharacterized RMLC-li 35.8 71 0.0024 20.1 4.7 23 32-54 132-154 (159)
355 2kym_A BUD emergence protein 1 35.4 36 0.0012 20.4 3.1 20 67-86 15-34 (120)
356 1udl_A Intersectin 2, KIAA1256 35.2 28 0.00095 19.9 2.4 20 67-86 46-65 (98)
357 3qwy_A Cell death abnormality 35.0 1.1E+02 0.0037 21.0 8.2 71 11-86 75-178 (308)
358 2pkt_A PDZ and LIM domain prot 34.5 45 0.0015 18.2 3.3 44 44-87 40-85 (91)
359 2v1y_A Phosphatidylinositol-4, 34.3 78 0.0027 19.1 4.9 49 10-58 16-72 (108)
360 2enm_A Sorting nexin-9; SH3-li 34.1 42 0.0014 18.0 3.0 19 68-86 23-41 (77)
361 1gbq_A GRB2; complex (signal t 34.1 20 0.00069 19.3 1.6 20 67-86 21-40 (74)
362 2dl5_A KIAA0769 protein; SH3 d 34.1 30 0.001 18.8 2.4 20 67-86 25-44 (78)
363 2yt6_A Adult MALE urinary blad 33.9 37 0.0013 19.5 2.9 20 67-86 39-58 (109)
364 3qa8_A MGC80376 protein; kinas 33.6 50 0.0017 25.8 4.3 50 23-72 321-371 (676)
365 2i4s_A General secretion pathw 33.4 58 0.002 18.5 3.7 68 14-86 25-94 (105)
366 1z9q_A Neutrophil cytosol fact 32.9 12 0.00042 21.0 0.6 20 67-86 30-49 (79)
367 2qcp_X Cation efflux system pr 32.7 37 0.0013 19.1 2.6 36 47-89 34-69 (80)
368 2d8h_A SH3YL1 protein; SH3 dom 32.6 27 0.00091 19.0 2.0 20 67-86 29-48 (80)
369 1wmh_B Partitioning defective- 32.3 76 0.0026 18.4 6.4 46 12-58 5-52 (86)
370 1nm7_A Peroxisomal membrane pr 32.2 31 0.0011 18.7 2.2 20 67-86 19-39 (69)
371 2o2o_A SH3-domain kinase-bindi 31.9 18 0.00062 20.8 1.2 19 67-85 30-48 (92)
372 2v1r_A Peroxisomal membrane pr 31.8 39 0.0013 18.2 2.6 20 67-86 26-46 (80)
373 2vkn_A Protein SSU81; membrane 31.6 30 0.001 18.3 2.1 16 69-84 21-36 (70)
374 3abf_A 4-oxalocrotonate tautom 31.4 55 0.0019 16.6 3.4 24 36-59 21-44 (64)
375 1gri_A Growth factor bound pro 31.3 1E+02 0.0035 19.6 8.3 70 12-87 93-190 (217)
376 4a6q_A Histone deacetylase com 31.0 41 0.0014 21.5 2.8 61 25-85 55-138 (143)
377 4h87_A Kanadaptin; FHA domain 31.0 56 0.0019 19.9 3.5 11 72-82 109-119 (130)
378 3p14_A L-rhamnose isomerase; T 31.0 29 0.00099 26.0 2.4 21 32-52 385-405 (424)
379 2vb2_X Copper protein, cation 30.7 41 0.0014 19.3 2.6 36 47-89 42-77 (88)
380 2m0y_A Dedicator of cytokinesi 30.5 25 0.00087 18.7 1.6 19 67-85 23-41 (74)
381 2ba3_A NIKA; dimer, bacterial 30.5 41 0.0014 16.9 2.4 29 24-52 14-42 (51)
382 3m20_A 4-oxalocrotonate tautom 30.4 57 0.002 16.8 3.1 23 37-59 20-42 (62)
383 4gmv_A RAS-associated and plec 30.4 1.4E+02 0.0047 20.8 6.7 41 10-50 28-68 (281)
384 3osv_A Flagellar basal-BODY RO 30.3 95 0.0033 18.9 4.5 41 10-66 35-76 (138)
385 2csi_A RIM-BP2, RIM binding pr 30.2 40 0.0014 18.2 2.5 18 69-86 28-45 (76)
386 4dxa_B KREV interaction trappe 30.1 56 0.0019 22.6 3.7 46 11-60 3-53 (322)
387 1d8w_A L-rhamnose isomerase; b 29.6 33 0.0011 25.7 2.5 21 32-52 387-407 (426)
388 3gqs_A Adenylate cyclase-like 29.6 29 0.001 20.1 1.9 20 58-82 73-92 (106)
389 2k9x_A Tburm1, uncharacterized 29.2 43 0.0015 20.1 2.6 66 23-89 20-102 (110)
390 3reb_B Tyrosine-protein kinase 29.0 48 0.0016 18.4 2.7 20 66-85 14-33 (90)
391 2ege_A Uncharacterized protein 28.7 41 0.0014 18.1 2.3 16 69-84 28-43 (75)
392 2d9r_A Conserved hypothetical 28.5 34 0.0012 20.5 2.1 17 71-87 88-104 (104)
393 4dib_A GAPDH, glyceraldehyde 3 28.1 87 0.003 22.7 4.5 36 53-89 64-101 (345)
394 1ffv_A CUTS, iron-sulfur prote 28.1 71 0.0024 20.5 3.7 51 21-71 10-67 (163)
395 3i18_A LMO2051 protein; alpha- 28.0 48 0.0016 18.7 2.6 18 66-83 16-33 (100)
396 3po8_A RV0020C protein, putati 27.8 43 0.0015 19.1 2.4 19 58-82 69-87 (100)
397 1mvf_D MAZE protein, PEMI-like 27.5 31 0.0011 19.2 1.7 17 69-85 22-38 (82)
398 2w4f_A Protein LAP4; structura 27.5 73 0.0025 17.4 3.4 54 27-88 38-93 (97)
399 1i1j_A Melanoma derived growth 27.4 48 0.0017 19.6 2.6 20 66-85 33-52 (108)
400 1c1y_B Proto-onkogene serine/t 27.4 92 0.0031 17.8 8.6 65 16-83 4-75 (77)
401 1n62_A Carbon monoxide dehydro 27.3 74 0.0025 20.4 3.7 51 21-71 10-67 (166)
402 3ny5_A Serine/threonine-protei 26.8 1.1E+02 0.0036 18.3 8.4 65 15-82 15-83 (96)
403 2kjp_A Uncharacterized protein 26.8 50 0.0017 18.5 2.6 18 66-83 10-27 (91)
404 2rqr_A CED-12 homolog, engulfm 26.7 61 0.0021 19.3 3.0 20 67-86 71-90 (119)
405 1row_A SSP-19, MSP-domain prot 26.7 57 0.0019 19.4 2.9 23 13-35 18-40 (109)
406 2jtd_A Myomesin-1, skelemin; i 26.5 93 0.0032 19.8 3.9 36 50-85 66-101 (142)
407 2glw_A PHS018, 92AA long hypot 26.4 35 0.0012 19.9 1.8 26 60-85 60-85 (92)
408 3kt9_A Aprataxin; FHA domain, 26.2 36 0.0012 20.3 1.9 23 59-84 69-91 (102)
409 1ugv_A KIAA0621, olygophrenin- 26.0 24 0.00084 18.9 1.0 18 67-84 22-39 (72)
410 2de0_X Alpha-(1,6)-fucosyltran 25.9 50 0.0017 25.1 3.0 24 66-89 453-476 (526)
411 2kbt_A Chimera of proto-oncoge 25.8 62 0.0021 20.0 3.0 19 67-85 17-35 (142)
412 2jqj_A DNA damage response pro 25.7 33 0.0011 21.3 1.7 21 58-82 91-111 (151)
413 4hti_A Receptor-type tyrosine- 25.6 53 0.0018 19.7 2.5 22 10-34 41-62 (99)
414 2uzc_A Human pdlim5, PDZ and L 25.6 65 0.0022 17.4 2.9 45 44-88 40-86 (88)
415 1hsq_A Phospholipase C-gamma ( 25.6 14 0.00048 19.8 -0.1 19 67-85 18-36 (71)
416 1jqq_A PEX13P, peroxisomal mem 25.3 58 0.002 18.1 2.6 20 67-86 26-46 (92)
417 2jvf_A De novo protein M7; tet 25.2 76 0.0026 18.2 3.0 28 13-41 7-36 (96)
418 3qoq_A Alginate and motility r 25.2 63 0.0022 17.9 2.7 29 25-53 19-47 (69)
419 2opa_A Probable tautomerase YW 25.1 73 0.0025 15.9 3.1 23 37-59 21-43 (61)
420 2eki_A DRG 1, developmentally- 25.1 35 0.0012 20.2 1.6 49 28-85 29-87 (93)
421 2d90_A PDZ domain containing p 25.0 73 0.0025 17.8 3.1 21 63-83 37-57 (102)
422 1z9l_A Vesicle-associated memb 24.9 68 0.0023 19.2 3.0 23 13-35 30-52 (128)
423 2dls_A PDZ-rhogef, RHO guanine 24.9 74 0.0025 17.5 3.0 21 63-83 36-56 (93)
424 1otf_A 4-oxalocrotonate tautom 24.4 76 0.0026 15.8 3.1 22 37-58 21-42 (62)
425 1rm6_C 4-hydroxybenzoyl-COA re 24.2 1.1E+02 0.0037 19.4 4.0 52 21-72 9-67 (161)
426 2he4_A Na(+)/H(+) exchange reg 24.2 93 0.0032 16.8 3.4 52 27-86 32-85 (90)
427 3tca_A Amyloid beta A4 precurs 24.0 1.6E+02 0.0054 19.4 6.2 42 10-51 31-72 (291)
428 3hui_A Ferredoxin; cytochrome 24.0 1.3E+02 0.0043 18.2 5.3 34 7-40 15-48 (126)
429 3bpu_A Membrane-associated gua 24.0 60 0.002 17.6 2.5 17 67-83 36-52 (88)
430 2eaq_A LIM domain only protein 23.7 45 0.0015 18.1 1.9 21 63-83 35-55 (90)
431 2gpe_A Bifunctional protein PU 23.6 47 0.0016 16.6 1.8 26 27-52 5-30 (52)
432 2vsp_A PDZ domain-containing p 23.6 59 0.002 17.7 2.4 43 43-87 39-85 (91)
433 2rqv_A BUD emergence protein 1 23.6 31 0.001 20.5 1.2 21 66-86 16-36 (108)
434 3m21_A Probable tautomerase HP 23.5 82 0.0028 16.4 2.9 24 36-59 23-46 (67)
435 3hx1_A SLR1951 protein; P74513 23.4 32 0.0011 21.0 1.3 11 72-82 94-104 (131)
436 2eel_A Cell death activator CI 23.3 1.2E+02 0.0041 17.7 4.6 55 16-72 12-68 (91)
437 3mb2_A 4-oxalocrotonate tautom 22.8 95 0.0032 16.4 3.2 29 37-65 22-60 (72)
438 2kv8_A RGS12, regulator of G-p 22.8 58 0.002 17.4 2.2 21 45-65 37-57 (83)
439 1msp_A MSP, major sperm protei 22.8 77 0.0026 19.1 3.0 24 12-35 27-50 (126)
440 3jv3_A Intersectin-1; SH3 doma 22.6 63 0.0021 21.5 2.8 23 66-88 13-35 (283)
441 1rgw_A ZAsp protein; PDZ, cyph 22.4 66 0.0022 17.2 2.4 43 44-86 38-82 (85)
442 2csq_A RIM-BP2, RIM binding pr 22.1 83 0.0028 17.8 2.9 19 68-86 38-56 (97)
443 1ng2_A Neutrophil cytosolic fa 22.1 65 0.0022 20.6 2.6 21 66-86 22-42 (193)
444 1fr3_A MOP, molybdate/tungstat 22.0 38 0.0013 17.4 1.3 32 54-85 25-59 (67)
445 2l55_A SILB,silver efflux prot 21.9 72 0.0025 18.0 2.5 18 72-89 46-63 (82)
446 2cri_A Vesicle-associated memb 21.9 77 0.0026 19.6 2.9 24 13-36 34-57 (147)
447 2pa1_A PDZ and LIM domain prot 21.8 51 0.0017 17.8 1.8 21 63-83 33-53 (87)
448 1g6g_A Protein kinase RAD53; b 21.7 75 0.0026 18.9 2.8 23 57-82 82-104 (127)
449 1x5q_A LAP4 protein; PDZ domai 21.7 54 0.0018 18.7 2.0 45 44-88 59-105 (110)
450 1y51_A Phosphocarrier protein 21.7 1.1E+02 0.0037 17.3 3.3 46 37-85 19-66 (88)
451 1z6m_A Conserved hypothetical 21.6 87 0.003 18.9 3.1 28 44-72 142-169 (175)
452 3htn_A Putative DNA binding pr 21.5 1.5E+02 0.0053 18.3 4.8 31 22-52 14-44 (149)
453 1qu5_A Protein kinase SPK1; FH 21.5 52 0.0018 21.3 2.1 25 58-85 111-135 (182)
454 2q3g_A PDZ and LIM domain prot 21.1 55 0.0019 17.8 1.9 20 64-83 35-54 (89)
455 1x5n_A Harmonin; PDZ domain, u 21.1 98 0.0034 17.6 3.1 21 63-83 48-68 (114)
456 1awj_A ITK; transferase, regul 21.0 13 0.00046 20.2 -0.8 19 67-85 32-50 (77)
457 1d1n_A Initiation factor 2; be 21.0 55 0.0019 19.5 1.9 13 73-85 81-93 (99)
458 1baz_A ARC repressor; transcri 20.9 90 0.0031 16.0 2.6 27 27-53 9-35 (53)
459 1wic_A Hypothetical protein ri 20.8 85 0.0029 19.6 3.0 23 13-35 38-60 (152)
460 3lxf_A Ferredoxin; iron, iron- 20.8 1.3E+02 0.0045 17.2 3.9 27 15-41 2-28 (104)
461 3ry0_A Putative tautomerase; o 20.8 1E+02 0.0034 15.8 2.9 23 37-59 21-43 (65)
462 2i6v_A General secretion pathw 20.8 1.1E+02 0.0039 16.5 5.7 69 13-86 6-76 (87)
463 3id1_A Regulator of sigma E pr 20.7 50 0.0017 18.6 1.7 20 64-83 10-29 (95)
464 2kb3_A Oxoglutarate dehydrogen 20.7 55 0.0019 20.3 2.0 12 71-82 119-130 (143)
465 1uht_A Expressed protein; FHA 20.6 57 0.002 19.1 2.0 12 71-82 90-101 (118)
466 1mv3_A MYC box dependent inter 20.5 50 0.0017 22.2 1.9 18 67-84 154-171 (213)
467 2v90_A PDZ domain-containing p 20.4 59 0.002 17.9 2.0 44 44-88 43-89 (96)
468 3o6q_A Stage II sporulation pr 20.3 42 0.0014 21.7 1.4 24 34-57 50-73 (157)
469 2crv_A IF-2MT, translation ini 20.3 51 0.0018 20.4 1.7 13 73-85 89-101 (120)
470 3djh_A Macrophage migration in 20.3 1.1E+02 0.0037 17.7 3.3 22 38-59 78-99 (114)
471 4a9a_A Ribosome-interacting GT 20.3 50 0.0017 23.9 1.9 15 70-84 361-375 (376)
472 2pzd_A Serine protease HTRA2; 20.1 26 0.00089 20.2 0.3 20 45-64 49-68 (113)
473 2pie_A E3 ubiquitin-protein li 20.1 1.2E+02 0.004 18.4 3.5 25 56-83 77-101 (138)
No 1
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=100.00 E-value=5e-33 Score=177.65 Aligned_cols=81 Identities=28% Similarity=0.527 Sum_probs=76.3
Q ss_pred CCCCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeec
Q 048514 8 IPDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAG 87 (89)
Q Consensus 8 ~~~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~ 87 (89)
+.++++|+|+|++++|.+++|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|||||+|||+++|+
T Consensus 35 k~~~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~ 114 (115)
T 3kyd_D 35 KKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQC 114 (115)
T ss_dssp ----CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCC
T ss_pred CCCCCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeecc
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 048514 88 G 88 (89)
Q Consensus 88 G 88 (89)
|
T Consensus 115 G 115 (115)
T 3kyd_D 115 G 115 (115)
T ss_dssp C
T ss_pred C
Confidence 8
No 2
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=100.00 E-value=2.3e-32 Score=172.51 Aligned_cols=83 Identities=22% Similarity=0.453 Sum_probs=76.6
Q ss_pred CCCCCCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEee
Q 048514 6 DNIPDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 6 ~~~~~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~ 85 (89)
+.++++.+|+|+|++ +|++++|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|||||+|+|+++
T Consensus 24 ~~~~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~ 102 (106)
T 2eke_C 24 PEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 102 (106)
T ss_dssp CCCCCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred CCCCCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEee
Confidence 344577899999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 048514 86 AGGA 89 (89)
Q Consensus 86 q~GG 89 (89)
|+||
T Consensus 103 q~GG 106 (106)
T 2eke_C 103 QIGG 106 (106)
T ss_dssp C---
T ss_pred cccC
Confidence 9998
No 3
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=100.00 E-value=2e-32 Score=168.56 Aligned_cols=80 Identities=30% Similarity=0.498 Sum_probs=77.0
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
++++|+|+|++++|+++.|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|||||+|||+++|+||
T Consensus 2 ~~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 2 ANDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred CCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999998
No 4
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.98 E-value=2.8e-32 Score=168.19 Aligned_cols=81 Identities=30% Similarity=0.500 Sum_probs=75.1
Q ss_pred CCCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecC
Q 048514 9 PDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGG 88 (89)
Q Consensus 9 ~~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~G 88 (89)
.++.+|+|+|++++|++++|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|+|||+|||+++|+|
T Consensus 13 ~~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 92 (93)
T 2d07_B 13 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 92 (93)
T ss_dssp --CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred CCCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 048514 89 A 89 (89)
Q Consensus 89 G 89 (89)
|
T Consensus 93 G 93 (93)
T 2d07_B 93 G 93 (93)
T ss_dssp -
T ss_pred C
Confidence 8
No 5
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.97 E-value=5.8e-32 Score=170.05 Aligned_cols=81 Identities=28% Similarity=0.474 Sum_probs=78.8
Q ss_pred CCCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecC
Q 048514 9 PDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGG 88 (89)
Q Consensus 9 ~~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~G 88 (89)
.++.+|+|+|++++|++++|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|||||+|||+++|+|
T Consensus 20 ~~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 99 (104)
T 1wz0_A 20 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTS 99 (104)
T ss_dssp SCSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCC
T ss_pred CCCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 048514 89 A 89 (89)
Q Consensus 89 G 89 (89)
|
T Consensus 100 G 100 (104)
T 1wz0_A 100 G 100 (104)
T ss_dssp C
T ss_pred C
Confidence 8
No 6
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.97 E-value=1.5e-31 Score=165.30 Aligned_cols=80 Identities=30% Similarity=0.486 Sum_probs=77.1
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
++++|+|+|++++|++++|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|||||+|||+++|+||
T Consensus 4 ~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 4 MNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred CCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999998
No 7
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=99.97 E-value=2.6e-31 Score=164.24 Aligned_cols=78 Identities=13% Similarity=0.129 Sum_probs=73.8
Q ss_pred CCCCCCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEe
Q 048514 6 DNIPDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATF 84 (89)
Q Consensus 6 ~~~~~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~ 84 (89)
..++.+.+|+|+|++ +|.+++|+|+++|+|+|||++||++.|++++++||+|||.||++++||++|+|||||+|||++
T Consensus 14 ~~~~~~~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 14 TLPETPRLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp CCCSCCCCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred CCCCCCCeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 345678899999995 799999999999999999999999999999999999999999999999999999999999986
No 8
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=99.97 E-value=5.4e-31 Score=163.93 Aligned_cols=80 Identities=23% Similarity=0.392 Sum_probs=73.5
Q ss_pred CCCCCCCCCcEEEEEEecCCC-EEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEE
Q 048514 4 SPDNIPDQHFINLVVKGQDND-PLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVA 82 (89)
Q Consensus 4 ~~~~~~~~~~I~i~v~~~~~~-~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv 82 (89)
+|..++++++|+|+|++++|. +++|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|||||+|||
T Consensus 16 ~~~~~~~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv 95 (97)
T 2jxx_A 16 PRGSTETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEV 95 (97)
T ss_dssp ----CCSCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEE
T ss_pred CCCCCCCCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEE
Confidence 346667889999999999995 8999999999999999999999999999999999999999999999999999999999
Q ss_pred E
Q 048514 83 T 83 (89)
Q Consensus 83 ~ 83 (89)
+
T Consensus 96 ~ 96 (97)
T 2jxx_A 96 W 96 (97)
T ss_dssp E
T ss_pred e
Confidence 7
No 9
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.97 E-value=1.8e-31 Score=169.28 Aligned_cols=83 Identities=27% Similarity=0.516 Sum_probs=79.8
Q ss_pred CCCCCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeee
Q 048514 7 NIPDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 7 ~~~~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q 86 (89)
...++.+|+|+|++++|+++.|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|||||+|||+++|
T Consensus 20 ~~~~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q 99 (110)
T 2k8h_A 20 CKEETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQ 99 (110)
T ss_dssp CCCCCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCC
T ss_pred CCCCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcc
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 048514 87 GGA 89 (89)
Q Consensus 87 ~GG 89 (89)
+||
T Consensus 100 ~Gg 102 (110)
T 2k8h_A 100 TGG 102 (110)
T ss_dssp CCC
T ss_pred cCc
Confidence 998
No 10
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6e-31 Score=180.42 Aligned_cols=79 Identities=22% Similarity=0.454 Sum_probs=76.2
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
++.+|+|+|. ++|.+++|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|||||+|||+++|+||
T Consensus 54 p~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG 132 (207)
T 3tix_A 54 PETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGG 132 (207)
T ss_dssp -CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTT
T ss_pred CCCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 4689999997 599999999999999999999999999999999999999999999999999999999999999999998
No 11
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.5e-30 Score=177.08 Aligned_cols=79 Identities=23% Similarity=0.468 Sum_probs=76.7
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
++.+|+|+|+ ++|.+++|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|||||+|+|+++|+||
T Consensus 26 ~~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg 104 (200)
T 3pge_A 26 PETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 104 (200)
T ss_dssp CCCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCC
T ss_pred CCCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcC
Confidence 5789999997 499999999999999999999999999999999999999999999999999999999999999999998
No 12
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.96 E-value=1.7e-29 Score=151.48 Aligned_cols=76 Identities=24% Similarity=0.353 Sum_probs=73.1
Q ss_pred CCCCCcEEEEEEecCCC-EEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEE
Q 048514 8 IPDQHFINLVVKGQDND-PLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVAT 83 (89)
Q Consensus 8 ~~~~~~I~i~v~~~~~~-~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~ 83 (89)
|.++++|+|+|++++|+ +++|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|||||+|||+
T Consensus 2 p~~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 2 PLGSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp TTCCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCCCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 45778999999999996 89999999999999999999999999999999999999999999999999999999997
No 13
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.96 E-value=1.6e-29 Score=148.96 Aligned_cols=72 Identities=32% Similarity=0.530 Sum_probs=70.1
Q ss_pred cEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEe
Q 048514 13 FINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATF 84 (89)
Q Consensus 13 ~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~ 84 (89)
+|+|+|++++|++++|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|||||+|||++
T Consensus 1 ~i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 1 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp CEEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999974
No 14
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=99.96 E-value=1.8e-31 Score=185.08 Aligned_cols=80 Identities=23% Similarity=0.461 Sum_probs=0.9
Q ss_pred CCCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecC
Q 048514 9 PDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGG 88 (89)
Q Consensus 9 ~~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~G 88 (89)
+++++|+|+| +++|++++|+|++++||+|||++||++.|++++++||+|||++|.+++||++|+|||||+|||+++|+|
T Consensus 17 ~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~G 95 (227)
T 3v7o_A 17 KPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccC
Confidence 3578999999 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 048514 89 A 89 (89)
Q Consensus 89 G 89 (89)
|
T Consensus 96 G 96 (227)
T 3v7o_A 96 G 96 (227)
T ss_dssp C
T ss_pred C
Confidence 8
No 15
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=99.94 E-value=2.8e-27 Score=163.48 Aligned_cols=80 Identities=23% Similarity=0.456 Sum_probs=77.3
Q ss_pred CCCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecC
Q 048514 9 PDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGG 88 (89)
Q Consensus 9 ~~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~G 88 (89)
.++++|+|+|++ ++++++|+|+++++|++||++||++.|++.+++||+|||++|++++||++|.|||+|+|||+.+|+|
T Consensus 17 ~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~G 95 (209)
T 3uf8_A 17 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (209)
T ss_dssp -CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTT
T ss_pred CCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccc
Confidence 478999999998 8889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 048514 89 A 89 (89)
Q Consensus 89 G 89 (89)
|
T Consensus 96 g 96 (209)
T 3uf8_A 96 G 96 (209)
T ss_dssp C
T ss_pred c
Confidence 7
No 16
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=99.93 E-value=5.7e-28 Score=178.22 Aligned_cols=79 Identities=23% Similarity=0.465 Sum_probs=0.0
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
++++|+|+|++ +|++++|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|||||+|||+++|+||
T Consensus 18 ~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~ 96 (360)
T 3ix6_A 18 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCch
Confidence 67899999997 68899999999999999999999999999999999999999999999999999999999999999998
No 17
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=99.93 E-value=1.8e-27 Score=175.71 Aligned_cols=79 Identities=22% Similarity=0.457 Sum_probs=0.0
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
++++|+|+|++ ++.+++|+|++++||++||++||++.|++.+++||+|||++|.+++||++|+|||||+|+|+++|+||
T Consensus 27 ~~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg 105 (389)
T 4da1_A 27 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGG 105 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccc
Confidence 55799999998 78899999999999999999999999999999999999999999999999999999999999999998
No 18
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=99.91 E-value=5.2e-24 Score=127.23 Aligned_cols=74 Identities=16% Similarity=0.379 Sum_probs=69.4
Q ss_pred CcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCC-cEeEEECCeecCCCCCccccCCCCCCEEEEEee
Q 048514 12 HFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYG-TFPFLINGNRFPHIRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 12 ~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~-~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~ 85 (89)
.-|++-+++.....+.|+|++++++++||.+||.+.|++++ ++||.|||.||.+++||++|+|+|||.|||++.
T Consensus 8 ~~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL~ 82 (82)
T 3goe_A 8 KLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVLD 82 (82)
T ss_dssp CEEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC-
T ss_pred HHHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeeeC
Confidence 45889999877788999999999999999999999999998 999999999999999999999999999999863
No 19
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.87 E-value=7e-22 Score=116.68 Aligned_cols=78 Identities=29% Similarity=0.558 Sum_probs=75.1
Q ss_pred CcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 12 HFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 12 ~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
+.|+|.|++.+|+.+.|+|.+++++..|+++|+++.|++++++||+|+|++|.++.|+++++|++||+|++++++.||
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 368999999999999999999999999999999999999999999999999999999999999999999999999998
No 20
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.87 E-value=1.2e-21 Score=120.69 Aligned_cols=81 Identities=28% Similarity=0.541 Sum_probs=77.4
Q ss_pred CCCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecC
Q 048514 9 PDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGG 88 (89)
Q Consensus 9 ~~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~G 88 (89)
.++..|+|+|++.+|+.+.|.|.+++++..|+++|+++.|++++++||+|+|++|.++.|+++++|++||+|++++++.|
T Consensus 17 ~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~G 96 (97)
T 1wyw_B 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 96 (97)
T ss_dssp --CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSC
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCC
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 048514 89 A 89 (89)
Q Consensus 89 G 89 (89)
|
T Consensus 97 G 97 (97)
T 1wyw_B 97 G 97 (97)
T ss_dssp C
T ss_pred C
Confidence 8
No 21
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.71 E-value=1.7e-16 Score=94.64 Aligned_cols=82 Identities=10% Similarity=0.125 Sum_probs=78.3
Q ss_pred CCCCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeec
Q 048514 8 IPDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAG 87 (89)
Q Consensus 8 ~~~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~ 87 (89)
+.+...|.|.|++.+|+.+.+.|.+++++..|++.++++.|++++.+||+|+|+.|.++.|..++++++|++|++++++.
T Consensus 7 ~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~ 86 (88)
T 3dbh_I 7 VGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLR 86 (88)
T ss_dssp SSCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCC
T ss_pred CCCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 048514 88 GA 89 (89)
Q Consensus 88 GG 89 (89)
||
T Consensus 87 GG 88 (88)
T 3dbh_I 87 GG 88 (88)
T ss_dssp CC
T ss_pred CC
Confidence 98
No 22
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.1e-16 Score=97.00 Aligned_cols=83 Identities=11% Similarity=0.121 Sum_probs=75.5
Q ss_pred CCCCCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeee
Q 048514 7 NIPDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 7 ~~~~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q 86 (89)
.++.+..|+|.|++.+|+.+.+.|.+++++..|++.++++.|++++.+||+|+|+.|.++.|..++++++|++|++++++
T Consensus 16 ~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl 95 (98)
T 4hcn_B 16 LYFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 95 (98)
T ss_dssp ------CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBC
T ss_pred CCCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 33466789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 048514 87 GGA 89 (89)
Q Consensus 87 ~GG 89 (89)
.||
T Consensus 96 ~GG 98 (98)
T 4hcn_B 96 RGG 98 (98)
T ss_dssp SCC
T ss_pred CCC
Confidence 998
No 23
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=4.5e-16 Score=92.17 Aligned_cols=78 Identities=13% Similarity=0.178 Sum_probs=72.3
Q ss_pred CcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 12 HFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 12 ~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
..|+|.|++.+|+.+.+.|.+++++..|++.++++.++|++.+||+|+|+.|.++.|..+++++++++|++++++.||
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 368899999899999999999999999999999999999999999999999999999999999999999999999997
No 24
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.66 E-value=1e-15 Score=88.51 Aligned_cols=76 Identities=11% Similarity=0.147 Sum_probs=71.3
Q ss_pred EEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 14 I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
++|.|++.+|+.+.+.+.+++++..|++.++++.|++++.+|++|+|+.|.++.|..++++++|++|++..++.||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 4688888889999999999999999999999999999999999999999999999999999999999999999998
No 25
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.66 E-value=1.5e-15 Score=87.86 Aligned_cols=76 Identities=12% Similarity=0.180 Sum_probs=72.9
Q ss_pred EEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 14 I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
++|.|++.+|+.+.+.+.+++++..|++.+++..|++++.++++|+|+.|.++.|.+++++.+|++|++..++.||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 4688888889999999999999999999999999999999999999999999999999999999999999999998
No 26
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=1.8e-15 Score=89.39 Aligned_cols=78 Identities=12% Similarity=0.168 Sum_probs=74.9
Q ss_pred CcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 12 HFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 12 ~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
..|+|.|++.+|+.+.+.+.+++++..|++.++++.+++++.+||+|+|+.|.++.|..+++++++++|++++++.||
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999999997
No 27
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=1.4e-15 Score=90.71 Aligned_cols=80 Identities=14% Similarity=0.150 Sum_probs=76.4
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
++..|+|.|++.+|+.+.+.|.+++++..|++.++++.+++++.+||+|+|+.|.++.|..++++++|++|+++.++.||
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 44679999999889999999999999999999999999999999999999999999999999999999999999999998
No 28
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.65 E-value=2.9e-15 Score=88.02 Aligned_cols=77 Identities=14% Similarity=0.185 Sum_probs=74.3
Q ss_pred CcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecC
Q 048514 12 HFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGG 88 (89)
Q Consensus 12 ~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~G 88 (89)
..+.|.|++.+|+.+.+.|.+++++..|++..+++.|+|++.+|++|+|+.|.++.|..++++++|++|++++++.|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999887
No 29
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.65 E-value=2.4e-15 Score=94.45 Aligned_cols=80 Identities=11% Similarity=0.162 Sum_probs=75.9
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
+...|+|.|++.+|+.+.+.|.+++++..|+..++++.|+|++.+||+|+|+.|.++.|..++++++|++|++++++.||
T Consensus 32 ~~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 32 ELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GGGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred CCccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999998
No 30
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.62 E-value=4.2e-15 Score=90.19 Aligned_cols=76 Identities=12% Similarity=0.172 Sum_probs=72.5
Q ss_pred EEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 14 I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
|.|.|++.+|+.+.+.|.+++++..|++.++++.|++++.+||+|+|+.|.++.|..++++++|++|++++++.||
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG 77 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGY 77 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 5788888899999999999999999999999999999999999999999999999999999999999999999998
No 31
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.61 E-value=1e-14 Score=88.08 Aligned_cols=81 Identities=9% Similarity=0.125 Sum_probs=75.8
Q ss_pred CCCCCCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEee
Q 048514 6 DNIPDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 6 ~~~~~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~ 85 (89)
+..+.+..|.|.|++.+|+.+.+.|.+++++..|++..+++.|++++.+||+|+|+.|.++.|..++++++|++|+++++
T Consensus 10 ~~~~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r 89 (91)
T 3v6c_B 10 SGLVPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 89 (91)
T ss_dssp -CCCCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECC
T ss_pred CCCCCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEe
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred e
Q 048514 86 A 86 (89)
Q Consensus 86 q 86 (89)
.
T Consensus 90 l 90 (91)
T 3v6c_B 90 L 90 (91)
T ss_dssp C
T ss_pred c
Confidence 5
No 32
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.60 E-value=1.1e-14 Score=91.13 Aligned_cols=78 Identities=12% Similarity=0.161 Sum_probs=74.8
Q ss_pred CcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 12 HFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 12 ~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
..|+|.|++.+|+.+.+.|.+++++..|++.++++.|++++.+||+|+|+.|.++.|..++++++|++|+++.++.||
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 579999999889999999999999999999999999999999999999999999999999999999999999999998
No 33
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.60 E-value=8.6e-15 Score=88.19 Aligned_cols=76 Identities=11% Similarity=0.147 Sum_probs=71.4
Q ss_pred EEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 14 I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
|.|.|++.+|+.+.+.|.+++++..|++..+++.|++++.+|++|+|+.|.++.|..++++++|++|.+++++.||
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg 76 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC--
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCC
Confidence 4688888899999999999999999999999999999999999999999999999999999999999999999998
No 34
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=8.1e-15 Score=88.29 Aligned_cols=77 Identities=13% Similarity=0.169 Sum_probs=69.0
Q ss_pred cEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 13 FINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 13 ~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
-+.|.|++.+|+.+.+.+.+++++..|++.++++.|+|++.+|++|+|+.|.++.|.+++++++|++|.++.++.||
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-----
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 47888998999999999999999999999999999999999999999999999999999999999999999999998
No 35
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.58 E-value=9.2e-15 Score=87.96 Aligned_cols=78 Identities=14% Similarity=0.185 Sum_probs=71.3
Q ss_pred CcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 12 HFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 12 ~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
..|+|.|++.+|+.+.+.|.+++++..|++.++++.|++++.+||+|+|+.|.++.|..++++++|++|.++.++.||
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC----
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 368999999889999999999999999999999999999999999999999999999999999999999999999997
No 36
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.57 E-value=1e-14 Score=88.84 Aligned_cols=78 Identities=13% Similarity=0.090 Sum_probs=71.6
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
.+..|+|.|++ |+.+.+.|.+++++..|++.++++.|++++.+||+|+|+.|.++.|.+++++++|++|++++++.||
T Consensus 16 ~~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 16 PRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp ----CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred CCCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 44568888887 7888999999999999999999999999999999999999999999999999999999999999998
No 37
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.57 E-value=2.9e-14 Score=87.07 Aligned_cols=76 Identities=12% Similarity=0.184 Sum_probs=72.6
Q ss_pred EEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 14 I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
++|.|++.+|+.+.+.|.+++++..|++.+++..|++++.+||+|+|+.|.++.|..++++.+|++|.+..++.||
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG 76 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCC
Confidence 4688888889999999999999999999999999999999999999999999999999999999999999999987
No 38
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=5.5e-14 Score=84.11 Aligned_cols=80 Identities=13% Similarity=0.028 Sum_probs=75.4
Q ss_pred CCCcEEEEEEecCC-CEEEE-EEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeec
Q 048514 10 DQHFINLVVKGQDN-DPLYF-EFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAG 87 (89)
Q Consensus 10 ~~~~I~i~v~~~~~-~~~~f-~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~ 87 (89)
....|+|.|+..+| +.+.+ .|.+++++..|++..+++.|++++.+||+|+|+.|.++.|..++++.+|++|++++++.
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 83 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPD 83 (89)
T ss_dssp CSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCC
T ss_pred CCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCC
Confidence 44679999999888 68899 59999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 048514 88 GA 89 (89)
Q Consensus 88 GG 89 (89)
||
T Consensus 84 gG 85 (89)
T 1wy8_A 84 SG 85 (89)
T ss_dssp CS
T ss_pred CC
Confidence 98
No 39
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.55 E-value=9e-14 Score=89.08 Aligned_cols=79 Identities=14% Similarity=0.198 Sum_probs=71.8
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
+...|+|.|++. |+.+.+.|.+++++..|++.++++.|++.+.+||+|+|+.|.++.|..++++++|++|+++..+.||
T Consensus 29 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 29 EPKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp CCCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC----
T ss_pred CCCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCC
Confidence 456899999987 8889999999999999999999999999999999999999999999999999999999999999886
No 40
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.55 E-value=3.3e-14 Score=86.48 Aligned_cols=79 Identities=13% Similarity=0.192 Sum_probs=75.2
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
++..|+|.|+.. |+.+.+.|.+++++..|++.++++.+++++.+||+|.|+.|.++.|..++++++|++|+++.++.||
T Consensus 14 ~~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 14 SSRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp CSCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred CCCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 557899999987 8899999999999999999999999999999999999999999999999999999999999999887
No 41
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.55 E-value=1.1e-13 Score=83.02 Aligned_cols=79 Identities=11% Similarity=0.113 Sum_probs=73.7
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
++..|+|.|++.+|+.+.+.|.+++++..|++..+++.|++++.+||+|.|+.|.++.|..++++ +|++|+++.+..++
T Consensus 2 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 2 EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp CCCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred CCcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999 89999999887653
No 42
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.54 E-value=1.1e-13 Score=85.07 Aligned_cols=78 Identities=9% Similarity=0.086 Sum_probs=71.2
Q ss_pred CCCCCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEe
Q 048514 7 NIPDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATF 84 (89)
Q Consensus 7 ~~~~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~ 84 (89)
+++.++-|.|.|++..|+.+.+.+.+++++..|++..+++.|+|++++|++|.|+.|.++.|.+++++.||++|+.+.
T Consensus 15 ~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 15 VPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp -----CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred cCCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 456778999999999999999999999999999999999999999999999999999999999999999999999874
No 43
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.52 E-value=1.8e-13 Score=88.19 Aligned_cols=78 Identities=12% Similarity=0.151 Sum_probs=73.6
Q ss_pred CcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 12 HFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 12 ~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
..+.|.|++.+|+.+.+.+.+++++..|++.++++.|++++.+||+|+|+.|.++.|..++++++|++|+++.++.||
T Consensus 75 ~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 75 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp TCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred cccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 347888888889999999999999999999999999999999999999999999999999999999999999999998
No 44
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.50 E-value=2.6e-13 Score=88.79 Aligned_cols=79 Identities=14% Similarity=0.186 Sum_probs=74.1
Q ss_pred CCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 11 QHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 11 ~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
+..|.|.|++.+|+.+.+.|.++++...|++..+++.|+|++.+|++|+|+.|.++.|..++++++|++|++.+++.||
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 4568899999899999999999999999999999999999999999999999999999999999999999999999998
No 45
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.49 E-value=3.5e-13 Score=83.55 Aligned_cols=79 Identities=18% Similarity=0.249 Sum_probs=73.7
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
++..|+|.|+..+++ +.+.|..++++..|++.++++.|++.+.+||+|+|+.|.++.|..++++++|++|+++.++.||
T Consensus 14 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 14 DPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp CSSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred CCceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 456799999987775 6899999999999999999999999999999999999999999999999999999999998886
No 46
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.49 E-value=2.4e-13 Score=84.47 Aligned_cols=79 Identities=8% Similarity=0.029 Sum_probs=73.3
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecC
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGG 88 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~G 88 (89)
....|+|.|+..+|+.+.+.|.+++++..|+..++++.|++.+.+||+|.|+.|.++.|..++++.+|++|+++..+..
T Consensus 20 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~ 98 (106)
T 1ttn_A 20 SGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPV 98 (106)
T ss_dssp -CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSS
T ss_pred CCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 4457999999988999999999999999999999999999999999999999999999999999999999999987653
No 47
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.49 E-value=3.9e-13 Score=82.91 Aligned_cols=83 Identities=16% Similarity=0.189 Sum_probs=76.1
Q ss_pred CCCCCCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEee
Q 048514 6 DNIPDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 6 ~~~~~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~ 85 (89)
+.+..+..|+|.|+..+|+ ..+.|.+++++..|++..+++.|++++.+||+|+|+.|.++.|..++++++|++|.++.+
T Consensus 15 ~~~~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r 93 (100)
T 1yqb_A 15 VPRGSPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIK 93 (100)
T ss_dssp CCSCCTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEEC
T ss_pred CCCCCCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEc
Confidence 3445667899999988775 689999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 048514 86 AGGA 89 (89)
Q Consensus 86 q~GG 89 (89)
..||
T Consensus 94 ~~~~ 97 (100)
T 1yqb_A 94 RQHR 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8875
No 48
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.49 E-value=5.1e-13 Score=77.99 Aligned_cols=74 Identities=14% Similarity=0.076 Sum_probs=69.7
Q ss_pred cEEEEEEecCCCEE-EEE-EeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeee
Q 048514 13 FINLVVKGQDNDPL-YFE-FRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 13 ~I~i~v~~~~~~~~-~f~-i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q 86 (89)
.+.|.|++.+|+.+ .+. +.+++++..|++..+++.|++++.+|++|+|+.|.++.|..++++.+|++|+++.++
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 47899998889886 898 999999999999999999999999999999999999999999999999999998865
No 49
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=4.3e-13 Score=78.51 Aligned_cols=77 Identities=12% Similarity=0.104 Sum_probs=72.0
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeee
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q 86 (89)
.+..|+|.|+..+|+.+.+.+.+++++..|++..+++.|++++.+|++|+|+.|.++.|..++++.+|++|+++.+.
T Consensus 4 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 4 GSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp SSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 45679999998889989999999999999999999999999999999999999999999999999999999998754
No 50
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.47 E-value=6.5e-13 Score=77.04 Aligned_cols=72 Identities=10% Similarity=0.149 Sum_probs=68.1
Q ss_pred EEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeee
Q 048514 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 14 I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q 86 (89)
|+|.|++ +|+.+.+.+.+++++..|++..++..|++++.+|++|+|+.|.++.|..++++.+|++|++...+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 7888888 88888999999999999999999999999999999999999999999999999999999998764
No 51
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.47 E-value=5.2e-13 Score=81.52 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=75.0
Q ss_pred CCCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCC-CCccccCCCCCCEEEEEeeec
Q 048514 9 PDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHI-RTPDQLGLKDGDEIVATFYAG 87 (89)
Q Consensus 9 ~~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~-~Tp~~l~medgD~Idv~~~q~ 87 (89)
+....|.|.|++..+ .+.+.|.+++++..|++..+++.|++++.+|++|.|+.|.++ .|..++++.+|++|.++.+..
T Consensus 11 ~~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~ 89 (94)
T 2kan_A 11 AAVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSI 89 (94)
T ss_dssp SSSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCC
T ss_pred cCCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCC
Confidence 456679999998777 788999999999999999999999999999999999999999 999999999999999999999
Q ss_pred CC
Q 048514 88 GA 89 (89)
Q Consensus 88 GG 89 (89)
||
T Consensus 90 gg 91 (94)
T 2kan_A 90 NR 91 (94)
T ss_dssp SS
T ss_pred CC
Confidence 97
No 52
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.46 E-value=5.1e-13 Score=89.35 Aligned_cols=76 Identities=12% Similarity=0.180 Sum_probs=72.4
Q ss_pred EEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 14 I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
|+|.|++.+|+.+.+.|.+++++..|++..+++.|++++.+|++|+|+.|.++.|..++++++|++|++++++.||
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG 76 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC-
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccc
Confidence 4688888899999999999999999999999999999999999999999999999999999999999999999998
No 53
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=7.2e-13 Score=83.48 Aligned_cols=77 Identities=10% Similarity=0.124 Sum_probs=73.6
Q ss_pred cEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 13 FINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 13 ~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
..+|.|+..+|+.+.+.|.+++++..|++..+++.|++++.+||+|+|+.|.++.|..++++.+|++|.+..++.||
T Consensus 9 ~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG 85 (114)
T 2kdi_A 9 EFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 85 (114)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred cEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 46788888899999999999999999999999999999999999999999999999999999999999999999997
No 54
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.45 E-value=1.2e-12 Score=78.18 Aligned_cols=75 Identities=11% Similarity=0.123 Sum_probs=70.3
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEee
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~ 85 (89)
.+..|.|.|++.+|+.+.+.|.+++++..|++..+++.|++++.+|++|.|+.|.++.|..++++ +|++|+++.+
T Consensus 14 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp -CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred CCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 55679999999999999999999999999999999999999999999999999999999999999 8999998763
No 55
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.43 E-value=8.7e-13 Score=82.42 Aligned_cols=79 Identities=5% Similarity=-0.017 Sum_probs=75.1
Q ss_pred CCcEEEEEEec---CCCEEEEEEec-cchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeee
Q 048514 11 QHFINLVVKGQ---DNDPLYFEFRR-DWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 11 ~~~I~i~v~~~---~~~~~~f~i~~-~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q 86 (89)
+..|+|.|+.. +|+.+.+.|.+ ++++..|++..++..|++++.+|++|.|+.+.++.|..++++.+|++|+++++.
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 45799999987 78889999998 999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 048514 87 GGA 89 (89)
Q Consensus 87 ~GG 89 (89)
.||
T Consensus 105 ~GG 107 (111)
T 1we6_A 105 RSG 107 (111)
T ss_dssp CCS
T ss_pred CCC
Confidence 998
No 56
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.43 E-value=1.7e-12 Score=86.11 Aligned_cols=81 Identities=12% Similarity=0.197 Sum_probs=75.1
Q ss_pred CCCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecC
Q 048514 9 PDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGG 88 (89)
Q Consensus 9 ~~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~G 88 (89)
+.+..|.|.|+..+|+.+.+.|.+++++..|+...+++.|++++.+||+|+|+.|.++.|..++++.+|++|++..+..|
T Consensus 16 ~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~g 95 (172)
T 3u30_A 16 PRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 95 (172)
T ss_dssp ---CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCC
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred C
Q 048514 89 A 89 (89)
Q Consensus 89 G 89 (89)
|
T Consensus 96 g 96 (172)
T 3u30_A 96 G 96 (172)
T ss_dssp C
T ss_pred c
Confidence 6
No 57
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.42 E-value=1.1e-12 Score=89.41 Aligned_cols=77 Identities=12% Similarity=0.129 Sum_probs=74.8
Q ss_pred cEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 13 FINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 13 ~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
.|+|.|++.+|+.+.+.|.+++++..|++..+++.|++++.+||+|.|+.|.++.|..++++++|++|++++++.||
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG 181 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 181 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999998
No 58
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.42 E-value=3.9e-12 Score=78.43 Aligned_cols=79 Identities=11% Similarity=0.195 Sum_probs=72.0
Q ss_pred CCCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecC
Q 048514 9 PDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGG 88 (89)
Q Consensus 9 ~~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~G 88 (89)
++...|.|.|+.. |+.+.+.|.+++++..|++..++..|++++.+||+|.|+.|.++.|..++++.+|++|.++....+
T Consensus 21 ~~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 21 GHPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp --CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred CCCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 3557899999987 888899999999999999999999999999999999999999999999999999999999887643
No 59
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.42 E-value=4e-12 Score=75.13 Aligned_cols=75 Identities=8% Similarity=0.067 Sum_probs=69.7
Q ss_pred CcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhh---hCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeee
Q 048514 12 HFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEK---KDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 12 ~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~---~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q 86 (89)
..|+|.|++.+|+.+.+.|.+++++..|++..+++ .|++++.+||+|.|+.|.++.|.+++++.+|++|++....
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 46899999988999999999999999999999998 7899999999999999999999999999999999998753
No 60
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.41 E-value=1.2e-12 Score=79.18 Aligned_cols=80 Identities=11% Similarity=0.125 Sum_probs=72.7
Q ss_pred CCCcEEEEEEecCCC--EEEEEEeccchHHHHHHHHHhhh--CCCCCcEeEEECCeecCCCCCcccc--CCCCCCEEEEE
Q 048514 10 DQHFINLVVKGQDND--PLYFEFRRDWEIKKLLITYCEKK--DAQYGTFPFLINGNRFPHIRTPDQL--GLKDGDEIVAT 83 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~--~~~f~i~~~t~l~kL~~~y~~~~--g~~~~~~rF~fdG~~l~~~~Tp~~l--~medgD~Idv~ 83 (89)
+...|+|.|++.++. .+.+.+.+++++..|++..++.. +++++.+|++|.|+.|.++.|..++ ++.++.+|+++
T Consensus 4 ~~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv 83 (93)
T 1wgd_A 4 GSSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLV 83 (93)
T ss_dssp CSCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEE
T ss_pred CCcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEE
Confidence 345689999988777 56666779999999999999998 9999999999999999999999999 99999999999
Q ss_pred eeecCC
Q 048514 84 FYAGGA 89 (89)
Q Consensus 84 ~~q~GG 89 (89)
....||
T Consensus 84 ~~~~gg 89 (93)
T 1wgd_A 84 CNVKSG 89 (93)
T ss_dssp CCCCCC
T ss_pred eCCCCC
Confidence 999987
No 61
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.41 E-value=1.5e-12 Score=81.83 Aligned_cols=79 Identities=10% Similarity=0.102 Sum_probs=73.0
Q ss_pred CCcEEEEEEecC----------CCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEE
Q 048514 11 QHFINLVVKGQD----------NDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEI 80 (89)
Q Consensus 11 ~~~I~i~v~~~~----------~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~I 80 (89)
+..|+|.|+..+ |+.+.+.|.+++++..|++..++..|++++.+|++|.|+.|.++.|..++++.+|++|
T Consensus 23 ~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i 102 (115)
T 1we7_A 23 KGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102 (115)
T ss_dssp CSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEE
T ss_pred CCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence 357888888753 5678899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeecCC
Q 048514 81 VATFYAGGA 89 (89)
Q Consensus 81 dv~~~q~GG 89 (89)
++++++.||
T Consensus 103 ~lv~rl~GG 111 (115)
T 1we7_A 103 HLALKERSG 111 (115)
T ss_dssp EEEECCCSC
T ss_pred EEEEEcCCC
Confidence 999999998
No 62
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.11 E-value=2.3e-14 Score=83.33 Aligned_cols=75 Identities=12% Similarity=0.112 Sum_probs=70.5
Q ss_pred EEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecC
Q 048514 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGG 88 (89)
Q Consensus 14 I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~G 88 (89)
++|.|++.+|+.+.+.+.+++++..|++.+++..|++++.++|+|+|+.|.++.|..++++++|++|+++++..|
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 467788888888899999999999999999999999999999999999999999999999999999999998877
No 63
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.39 E-value=4.6e-12 Score=77.08 Aligned_cols=73 Identities=7% Similarity=0.094 Sum_probs=68.2
Q ss_pred EEEEEEecCCCEEEEEEeccchHHHHHHHHHhh---hCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeee
Q 048514 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEK---KDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 14 I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~---~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q 86 (89)
|+|.|++.+|+.+.+.|.+++++..|++..++. .|++++.+||+|.|+.|.++.|..++++.+|++|.++...
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~ 76 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 76 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeC
Confidence 468888888999999999999999999999998 7899999999999999999999999999999999998765
No 64
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.38 E-value=4.3e-12 Score=78.86 Aligned_cols=75 Identities=11% Similarity=0.112 Sum_probs=70.7
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEe
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATF 84 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~ 84 (89)
..+.|.|.|++..|+.+.+.|.+++++..|++..+++.|++++++|++|.|+.|.++.|..++++.+|++|+++.
T Consensus 25 ~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 25 AATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp CCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 445699999998899999999999999999999999999999999999999999999999999999999999875
No 65
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.38 E-value=3.7e-14 Score=90.82 Aligned_cols=76 Identities=12% Similarity=0.180 Sum_probs=0.0
Q ss_pred EEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 14 I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
|.|.|++.+|+.+.+.|.+++++..|+...++..|+|++.++|+|+|..|.++.|..++++++|++|++++++.||
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence 4677888889999999999999999999999999999999999999999999999999999999999999999998
No 66
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.37 E-value=2.3e-12 Score=80.11 Aligned_cols=73 Identities=16% Similarity=0.286 Sum_probs=68.5
Q ss_pred EEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeee
Q 048514 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 14 I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q 86 (89)
|+|.|++.+|+.+.+.|.+++++..|+...+++.|++++.+||+|.|+.|.++.|..++++++|++|.++...
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~ 74 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQ 74 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcC
Confidence 5788888889999999999999999999999999999999999999999999999999999999999998764
No 67
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.36 E-value=6.2e-12 Score=75.27 Aligned_cols=74 Identities=8% Similarity=0.072 Sum_probs=70.5
Q ss_pred CcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCee-cCCCCCccccCCCCCCEEEEEee
Q 048514 12 HFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNR-FPHIRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 12 ~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~-l~~~~Tp~~l~medgD~Idv~~~ 85 (89)
.+++|.|+...|+.+.+.|.+++++..|++..+++.|++++.+|++|.|+. |.++.|.+++++.+|++|.++.+
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 478999999999999999999999999999999999999999999999999 99999999999999999998764
No 68
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.35 E-value=8.8e-12 Score=80.15 Aligned_cols=76 Identities=12% Similarity=0.184 Sum_probs=71.3
Q ss_pred EEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 14 I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
++|.|++.+|+.+.+.|.+++++..|++..+++.|++++.++|+|.|+.|.++.|..++++.+|++|++...+.||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~ 76 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecccc
Confidence 4688888889999999999999999999999999999999999999999999999999999999999999887764
No 69
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.35 E-value=6.7e-12 Score=76.08 Aligned_cols=77 Identities=16% Similarity=0.118 Sum_probs=70.1
Q ss_pred CCCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCC-CCccccCCCCCCEEEEEeeec
Q 048514 9 PDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHI-RTPDQLGLKDGDEIVATFYAG 87 (89)
Q Consensus 9 ~~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~-~Tp~~l~medgD~Idv~~~q~ 87 (89)
++...|+|.|+..+|+.+.+.|.+++++..|++.++++. ++.+||+|.|+.|.++ .|..++++++|++|+++..+.
T Consensus 3 ~~~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~ 79 (95)
T 1wia_A 3 SGSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPP 79 (95)
T ss_dssp CCCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCC
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCC
Confidence 345679999998889999999999999999999999887 8899999999999999 999999999999999998764
Q ss_pred C
Q 048514 88 G 88 (89)
Q Consensus 88 G 88 (89)
+
T Consensus 80 ~ 80 (95)
T 1wia_A 80 G 80 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 70
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.34 E-value=8.2e-12 Score=82.79 Aligned_cols=78 Identities=12% Similarity=0.151 Sum_probs=69.2
Q ss_pred CcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 12 HFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 12 ~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
..+.|.|+..+|+.+.+.|.+++++..|+...+++.|++++.+|++|+|+.|.++.|..++++++|++|++.++..||
T Consensus 95 gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 95 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp CCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred ccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 346777888889999999999999999999999999999999999999999999999999999999999999999998
No 71
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.34 E-value=1.4e-11 Score=76.13 Aligned_cols=78 Identities=14% Similarity=0.181 Sum_probs=68.5
Q ss_pred CCCCcEEEEEEecCCCEEEE--EEeccchHHHHHHHH-HhhhCCCCCcEeEEECCeecCCCCCccccCC-CCCCEEEEEe
Q 048514 9 PDQHFINLVVKGQDNDPLYF--EFRRDWEIKKLLITY-CEKKDAQYGTFPFLINGNRFPHIRTPDQLGL-KDGDEIVATF 84 (89)
Q Consensus 9 ~~~~~I~i~v~~~~~~~~~f--~i~~~t~l~kL~~~y-~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~m-edgD~Idv~~ 84 (89)
.....|+|.|++..|+.+.+ .+.++++...|++.. ++..|++++.+|++|.|+.|.++.|..++++ ++|++|.+++
T Consensus 15 ~~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmv 94 (98)
T 4a20_A 15 MDNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMI 94 (98)
T ss_dssp ---CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEE
T ss_pred CCCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEE
Confidence 35677999999999987666 555999999999998 7888999999999999999999999999999 9999999988
Q ss_pred ee
Q 048514 85 YA 86 (89)
Q Consensus 85 ~q 86 (89)
.+
T Consensus 95 sk 96 (98)
T 4a20_A 95 KP 96 (98)
T ss_dssp CC
T ss_pred eC
Confidence 65
No 72
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.33 E-value=1e-13 Score=91.72 Aligned_cols=76 Identities=12% Similarity=0.180 Sum_probs=0.0
Q ss_pred EEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 14 I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
|.|.|++.+|+.+.+.|.+++++..|+...++..|+|++.+||+|+|..|.++.|..++++++|++|++++++.||
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GG 76 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCC
Confidence 4677888888889999999999999999999999999999999999999999999999999999999999999998
No 73
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=3.3e-11 Score=76.80 Aligned_cols=77 Identities=13% Similarity=0.139 Sum_probs=71.0
Q ss_pred CCCcEEEEEE-ecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeee
Q 048514 10 DQHFINLVVK-GQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 10 ~~~~I~i~v~-~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q 86 (89)
....|+++|+ ...+..+.+.+.++.++..|++.+++..++|.+.+||+|+|+.|.+++|..++|+++|.+|++.+..
T Consensus 12 ~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 12 EDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp CSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEE
T ss_pred cCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEec
Confidence 4456899987 6678889999999999999999999999999999999999999999999999999999999998765
No 74
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.30 E-value=1.8e-11 Score=75.38 Aligned_cols=78 Identities=13% Similarity=0.087 Sum_probs=70.6
Q ss_pred CcEEEEEEecCC----CEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCC-CCccccCCCCCCEEEEEeee
Q 048514 12 HFINLVVKGQDN----DPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHI-RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 12 ~~I~i~v~~~~~----~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~-~Tp~~l~medgD~Idv~~~q 86 (89)
..|+|.|+...+ +.+.+.|.+++++..|++..+++.|++++.+|++|.|+.|.++ .|..++++.+|++|++....
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 458888877544 6778999999999999999999999999999999999999877 69999999999999999998
Q ss_pred cCC
Q 048514 87 GGA 89 (89)
Q Consensus 87 ~GG 89 (89)
.||
T Consensus 86 ~gg 88 (102)
T 1v5o_A 86 NVG 88 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 887
No 75
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.26 E-value=5.3e-12 Score=77.97 Aligned_cols=73 Identities=10% Similarity=0.129 Sum_probs=66.9
Q ss_pred CcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEee
Q 048514 12 HFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 12 ~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~ 85 (89)
-.|+|.|++ .|+.+.+.|.+++++..|++..+++.|++++.+|++|+|+.|.++.|..++++++|++|.++.+
T Consensus 27 m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 27 MSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp --CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCC
T ss_pred cEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 457888887 7888889999999999999999999999999999999999999999999999999999998764
No 76
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.25 E-value=1.6e-11 Score=76.80 Aligned_cols=79 Identities=11% Similarity=0.122 Sum_probs=72.0
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCC---------------CcEeEEECCeecC-CCCCccccC
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQY---------------GTFPFLINGNRFP-HIRTPDQLG 73 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~---------------~~~rF~fdG~~l~-~~~Tp~~l~ 73 (89)
.+..|+|.|+..+|+.+.+.|.+++++..|+++.+++.++++ ++++++|.|+.|. ++.|..+++
T Consensus 4 ~~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dyg 83 (105)
T 1v2y_A 4 GSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYG 83 (105)
T ss_dssp CCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHT
T ss_pred CCCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcC
Confidence 345699999999999999999999999999999999998866 4789999999997 569999999
Q ss_pred CCCCCEEEEEeeecC
Q 048514 74 LKDGDEIVATFYAGG 88 (89)
Q Consensus 74 medgD~Idv~~~q~G 88 (89)
+.+|++|+++.+..|
T Consensus 84 I~~g~~l~lv~~lr~ 98 (105)
T 1v2y_A 84 IRNRDEVSFIKKLGQ 98 (105)
T ss_dssp CCSSEEEEEEECSCS
T ss_pred CCCCCEEEEEehhcc
Confidence 999999999998877
No 77
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.24 E-value=4.4e-11 Score=74.28 Aligned_cols=75 Identities=13% Similarity=0.052 Sum_probs=66.0
Q ss_pred cEEEEEEecC----CCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecC
Q 048514 13 FINLVVKGQD----NDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGG 88 (89)
Q Consensus 13 ~I~i~v~~~~----~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~G 88 (89)
-.+|.|+..+ ++.+.+.|.++++...|++..+++.|+|++++|++|.|+.|.++.|.+++++.+|.+| +++...|
T Consensus 15 ~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg 93 (100)
T 1wju_A 15 IATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQ 93 (100)
T ss_dssp EEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCC
T ss_pred eEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECC
Confidence 3456666555 6688999999999999999999999999999999999999999999999999999999 5555554
No 78
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.21 E-value=1.3e-10 Score=74.63 Aligned_cols=81 Identities=12% Similarity=0.044 Sum_probs=71.8
Q ss_pred CCCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHh------hhCC--CCCcEeEEECCeecCCCCCccccCCCCCC--
Q 048514 9 PDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCE------KKDA--QYGTFPFLINGNRFPHIRTPDQLGLKDGD-- 78 (89)
Q Consensus 9 ~~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~------~~g~--~~~~~rF~fdG~~l~~~~Tp~~l~medgD-- 78 (89)
++...|.|+|+..+|+.+.+.|.++++...|++..++ +.|+ +++.+||+|.|+.|.++.|..++++.+|+
T Consensus 13 ~~~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~ 92 (125)
T 2gow_A 13 VPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTT 92 (125)
T ss_dssp CCTTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEE
T ss_pred CCCCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCce
Confidence 4566799999999999999999999999999999998 5677 48999999999999999999999999888
Q ss_pred EEEEEeeecCC
Q 048514 79 EIVATFYAGGA 89 (89)
Q Consensus 79 ~Idv~~~q~GG 89 (89)
+|+++++..|+
T Consensus 93 tlhlv~r~~~~ 103 (125)
T 2gow_A 93 VMHLVARETLP 103 (125)
T ss_dssp EEEEEECSCCS
T ss_pred EEEEEecCCCC
Confidence 57888776653
No 79
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.18 E-value=5.5e-11 Score=71.91 Aligned_cols=72 Identities=14% Similarity=0.166 Sum_probs=66.7
Q ss_pred EEEEEEecCCCEEEEEEe--ccchHHHHHHHH-HhhhCCCCCcEeEEECCeecCCCCCccccCC-CCCCEEEEEee
Q 048514 14 INLVVKGQDNDPLYFEFR--RDWEIKKLLITY-CEKKDAQYGTFPFLINGNRFPHIRTPDQLGL-KDGDEIVATFY 85 (89)
Q Consensus 14 I~i~v~~~~~~~~~f~i~--~~t~l~kL~~~y-~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~m-edgD~Idv~~~ 85 (89)
|+|.|++..|+.+.+.|. ++++...|++.. ++..|+|++++|++|.|+.|.++.|..++++ .+|.+|.|..+
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~ 77 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 77 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcC
Confidence 678899999998888766 999999999999 9999999999999999999999999999999 79999999865
No 80
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.17 E-value=3.1e-10 Score=73.08 Aligned_cols=78 Identities=12% Similarity=0.092 Sum_probs=69.9
Q ss_pred CcEEEEEEecCCCEE-EEEEeccchHHHHHHHHH-----hhhCCCC--CcEeEEECCeecCCCCCccccCCCCCC-----
Q 048514 12 HFINLVVKGQDNDPL-YFEFRRDWEIKKLLITYC-----EKKDAQY--GTFPFLINGNRFPHIRTPDQLGLKDGD----- 78 (89)
Q Consensus 12 ~~I~i~v~~~~~~~~-~f~i~~~t~l~kL~~~y~-----~~~g~~~--~~~rF~fdG~~l~~~~Tp~~l~medgD----- 78 (89)
+.+.|+|+..+|+.+ .+.+.++++...|++..+ ++.|+|+ +++||+|.|+.|.++.|.+++++.+|+
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v 94 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAV 94 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCC
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCc
Confidence 689999999999988 699999999999999995 4556775 899999999999999999999999995
Q ss_pred -EEEEEeeecCC
Q 048514 79 -EIVATFYAGGA 89 (89)
Q Consensus 79 -~Idv~~~q~GG 89 (89)
+++++.+..||
T Consensus 95 ~tmhlVlrl~g~ 106 (126)
T 1se9_A 95 TTMHVIIQAPVT 106 (126)
T ss_dssp EEEEEEECCCSS
T ss_pred EEEEEEeccCCc
Confidence 68999888876
No 81
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.15 E-value=3.6e-10 Score=67.48 Aligned_cols=67 Identities=10% Similarity=0.085 Sum_probs=62.3
Q ss_pred ecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeee
Q 048514 20 GQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 20 ~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q 86 (89)
..+|+.+.+.+.+++++..|++..++..|++++.+|++|+|+.|.++.|..++++.+|++|.++..+
T Consensus 18 ~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s~ 84 (85)
T 2kd0_A 18 KFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMASQ 84 (85)
T ss_dssp EETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECCC
T ss_pred EECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEeC
Confidence 3578888999999999999999999999999999999999999999999999999999999987653
No 82
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.14 E-value=5.6e-10 Score=69.84 Aligned_cols=75 Identities=12% Similarity=0.071 Sum_probs=66.4
Q ss_pred CCcEEEEEEecCC--CEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCC-CCCCEEEEEee
Q 048514 11 QHFINLVVKGQDN--DPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGL-KDGDEIVATFY 85 (89)
Q Consensus 11 ~~~I~i~v~~~~~--~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~m-edgD~Idv~~~ 85 (89)
.-.+.+.|.+..+ ..+.+.|.+++++..|++..+++.|+|++..|++|.|+.+.++.|..++|+ ++|++|++++-
T Consensus 22 ~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 22 DIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp CEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred cEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 3466777777654 578999999999999999999999999999999999998899999999999 69999998763
No 83
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.14 E-value=2.1e-10 Score=71.18 Aligned_cols=76 Identities=16% Similarity=0.136 Sum_probs=66.5
Q ss_pred CCcEEEEEEecCC---CEEEEEE--------ec-cchHHHHHHHHHhhh--CCCCCc-EeEEECCeecCCCCCccccCCC
Q 048514 11 QHFINLVVKGQDN---DPLYFEF--------RR-DWEIKKLLITYCEKK--DAQYGT-FPFLINGNRFPHIRTPDQLGLK 75 (89)
Q Consensus 11 ~~~I~i~v~~~~~---~~~~f~i--------~~-~t~l~kL~~~y~~~~--g~~~~~-~rF~fdG~~l~~~~Tp~~l~me 75 (89)
...|+|.|+..++ ..+.+.| .+ ++++..|++..+++. |++++. +||+|.|+.|.++.|..+++++
T Consensus 10 ~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 10 LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp CCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred CCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCC
Confidence 4457888887777 6777884 44 499999999999999 999999 9999999999999999999999
Q ss_pred CCCEEEEEeee
Q 048514 76 DGDEIVATFYA 86 (89)
Q Consensus 76 dgD~Idv~~~q 86 (89)
+|++|+++...
T Consensus 90 ~g~~i~lv~~~ 100 (107)
T 1x1m_A 90 PGSTVHVLRKS 100 (107)
T ss_dssp TTCEEEEEESS
T ss_pred CCCEEEEEeCC
Confidence 99999998754
No 84
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.13 E-value=5.7e-10 Score=72.74 Aligned_cols=73 Identities=12% Similarity=0.097 Sum_probs=69.2
Q ss_pred EEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEE-E-CCeecCCCCCccccCCCCCCEEEEEeee
Q 048514 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFL-I-NGNRFPHIRTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 14 I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~-f-dG~~l~~~~Tp~~l~medgD~Idv~~~q 86 (89)
+.|.|+..+|+.+.+.|.+++++..|++..++..|+|++..||+ | .|+.|.++.|.+++++.+|++|++...+
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~ 77 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDK 77 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccC
Confidence 67888888999999999999999999999999999999999999 9 7999999999999999999999998873
No 85
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.12 E-value=1.2e-09 Score=69.39 Aligned_cols=78 Identities=13% Similarity=0.079 Sum_probs=67.8
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHh------hhCC--CCCcEeEEECCeecCCCCCccccCCCCCCE--
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCE------KKDA--QYGTFPFLINGNRFPHIRTPDQLGLKDGDE-- 79 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~------~~g~--~~~~~rF~fdG~~l~~~~Tp~~l~medgD~-- 79 (89)
+.+.|.|+|++..|+.+.|.|.+++++..|++..++ +.++ +++.+||+|.|+.|.++.|..++++..++.
T Consensus 13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~t 92 (116)
T 1wgh_A 13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 92 (116)
T ss_dssp CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 445799999998999999999999999999999998 4564 689999999999999999999999988864
Q ss_pred EEEEeeec
Q 048514 80 IVATFYAG 87 (89)
Q Consensus 80 Idv~~~q~ 87 (89)
|+++++..
T Consensus 93 lhLvlr~~ 100 (116)
T 1wgh_A 93 MHLVARET 100 (116)
T ss_dssp EEEEECSS
T ss_pred EEEEccCC
Confidence 66666543
No 86
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.10 E-value=5.9e-10 Score=71.03 Aligned_cols=74 Identities=7% Similarity=0.065 Sum_probs=65.9
Q ss_pred EEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCC-------CCCEEEEEeee
Q 048514 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLK-------DGDEIVATFYA 86 (89)
Q Consensus 14 I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~me-------dgD~Idv~~~q 86 (89)
|.|+++.. ...+.+.|.+++++..|+...+++.|++++..|++|+|+.|.++.|..++++. ++.+|++.++
T Consensus 3 mfl~ir~~-ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr- 80 (118)
T 2fnj_B 3 VFLMIRRH-KTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR- 80 (118)
T ss_dssp EEEEEEEB-TEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB-
T ss_pred EEEEEecC-CEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec-
Confidence 56677642 24578999999999999999999999999999999999999999999999999 6999999998
Q ss_pred cCC
Q 048514 87 GGA 89 (89)
Q Consensus 87 ~GG 89 (89)
.||
T Consensus 81 ~~g 83 (118)
T 2fnj_B 81 ADD 83 (118)
T ss_dssp SSS
T ss_pred CCC
Confidence 554
No 87
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.08 E-value=3.7e-10 Score=69.72 Aligned_cols=74 Identities=11% Similarity=0.172 Sum_probs=64.0
Q ss_pred CCCcEEEEEEecCCC--EEEEEEeccchHHHHHHHHHhhh-CCC-CCcEeEEECCeecCCCCCcccc--CCCCCCEEEEE
Q 048514 10 DQHFINLVVKGQDND--PLYFEFRRDWEIKKLLITYCEKK-DAQ-YGTFPFLINGNRFPHIRTPDQL--GLKDGDEIVAT 83 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~--~~~f~i~~~t~l~kL~~~y~~~~-g~~-~~~~rF~fdG~~l~~~~Tp~~l--~medgD~Idv~ 83 (89)
....|+|+|++.+++ .+.+.+.+++++..|++..+++. |.+ ++.+|++|.|+.|.++.|..++ ++++|++|+++
T Consensus 20 ~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 20 QGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp ---CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 456799999988877 67889999999999999999864 555 5999999999999999999999 99999999863
No 88
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.08 E-value=1.3e-09 Score=65.57 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=66.5
Q ss_pred CCcEEEEEEecCCCEEEEEEecc-----chHHHHHHHHHhhhCCCCCcEeEEECCeecCC-CCCccccCCCCCCEEEEEe
Q 048514 11 QHFINLVVKGQDNDPLYFEFRRD-----WEIKKLLITYCEKKDAQYGTFPFLINGNRFPH-IRTPDQLGLKDGDEIVATF 84 (89)
Q Consensus 11 ~~~I~i~v~~~~~~~~~f~i~~~-----t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~-~~Tp~~l~medgD~Idv~~ 84 (89)
...|+|.|+. .+..+.+.+.++ +++..|++..+++.|++++.+|++|.|+.|.+ +.|..++++.+|++|+++.
T Consensus 5 ~~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 5 SSGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp CSSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred CCeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 4579999987 577888999995 99999999999999999999999999999998 5589999999999999876
Q ss_pred e
Q 048514 85 Y 85 (89)
Q Consensus 85 ~ 85 (89)
.
T Consensus 84 ~ 84 (92)
T 1wxv_A 84 K 84 (92)
T ss_dssp C
T ss_pred c
Confidence 4
No 89
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.06 E-value=2.1e-09 Score=65.83 Aligned_cols=75 Identities=15% Similarity=0.160 Sum_probs=66.4
Q ss_pred CCCCcEEEEEEecCCC--EEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEEC--Ce---ec-CCCCCccccCCCCCCEE
Q 048514 9 PDQHFINLVVKGQDND--PLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLIN--GN---RF-PHIRTPDQLGLKDGDEI 80 (89)
Q Consensus 9 ~~~~~I~i~v~~~~~~--~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fd--G~---~l-~~~~Tp~~l~medgD~I 80 (89)
+++..|+|.|.+..+. .+.+++.+++++..|++..+++.|+|++++|++|. |+ .| .++.|..++++++|++|
T Consensus 11 ~~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gsti 90 (95)
T 2kjr_A 11 GKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRL 90 (95)
T ss_dssp CCCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEE
T ss_pred CCCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEE
Confidence 4677899999876554 68899999999999999999999999999999997 55 45 78899999999999999
Q ss_pred EEE
Q 048514 81 VAT 83 (89)
Q Consensus 81 dv~ 83 (89)
.++
T Consensus 91 hlv 93 (95)
T 2kjr_A 91 HVV 93 (95)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 90
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.05 E-value=1.4e-09 Score=66.49 Aligned_cols=72 Identities=11% Similarity=0.062 Sum_probs=65.7
Q ss_pred CCcEEEEEEecCCCEE-EEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEe
Q 048514 11 QHFINLVVKGQDNDPL-YFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATF 84 (89)
Q Consensus 11 ~~~I~i~v~~~~~~~~-~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~ 84 (89)
...|+|+|+. .|+.+ .+.|..++++..|++..++..|++++.+|++|.|+.|.++ |..++++.+|++|.++.
T Consensus 5 ~~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~ 77 (96)
T 1wgg_A 5 SSGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMG 77 (96)
T ss_dssp CCEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCC
T ss_pred CcEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEe
Confidence 4578999985 67777 5999999999999999999999999999999999999988 99999999999998764
No 91
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.04 E-value=1.9e-09 Score=78.20 Aligned_cols=77 Identities=10% Similarity=0.121 Sum_probs=71.2
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeee
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q 86 (89)
.+..|+|.|++.+|+.+.+.|.+++++..|++..+++.|++++.+|++|.|+.|.++.|..++++.+|++|++++++
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence 45678999999889999999999999999999999999999999999999999999999999999999999998875
No 92
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.03 E-value=7.4e-10 Score=66.69 Aligned_cols=74 Identities=14% Similarity=0.031 Sum_probs=66.7
Q ss_pred CCcEEEEEEecCCCEEEE-EEeccchHHHHHHHHHhhhCCCCCcEeEE---ECCeecCCCCCccccCCCCCCEEEEEee
Q 048514 11 QHFINLVVKGQDNDPLYF-EFRRDWEIKKLLITYCEKKDAQYGTFPFL---INGNRFPHIRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 11 ~~~I~i~v~~~~~~~~~f-~i~~~t~l~kL~~~y~~~~g~~~~~~rF~---fdG~~l~~~~Tp~~l~medgD~Idv~~~ 85 (89)
...|+|.|+. .|+.+.+ .|.+++++..|++..+++.|++++.+|++ |.|+.|.++.|..++++.+|++|.++..
T Consensus 5 ~~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 5 SSGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp CCSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred CceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 3567888875 6777788 89999999999999999999999999999 9999999999999999999999988653
No 93
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=98.99 E-value=4.8e-09 Score=66.79 Aligned_cols=73 Identities=8% Similarity=0.080 Sum_probs=65.7
Q ss_pred EEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCC-------CCEEEEEeee
Q 048514 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKD-------GDEIVATFYA 86 (89)
Q Consensus 14 I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~med-------gD~Idv~~~q 86 (89)
+.|+|+. .+..+.+.+++++++..|+...+++.|+++++.||+|+|+.|.++.|..++++++ +.+|+..++.
T Consensus 3 vFl~Ikr-~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr~ 81 (118)
T 4ajy_B 3 VFLMIRR-HKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRA 81 (118)
T ss_dssp EEEEEEE-BTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEECC
T ss_pred eEEEEec-CCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEec
Confidence 4556653 4557889999999999999999999999999999999999999999999999999 9999999886
Q ss_pred c
Q 048514 87 G 87 (89)
Q Consensus 87 ~ 87 (89)
.
T Consensus 82 ~ 82 (118)
T 4ajy_B 82 D 82 (118)
T ss_dssp S
T ss_pred C
Confidence 3
No 94
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.98 E-value=1.2e-09 Score=66.54 Aligned_cols=73 Identities=10% Similarity=0.017 Sum_probs=65.5
Q ss_pred CCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEee
Q 048514 11 QHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 11 ~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~ 85 (89)
...|+|+|+. .++.+.+.|.+++++..|++..+++.|++++.+|++|.|+.| ++.|..++++.+|++|+++..
T Consensus 15 ~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 15 KELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp CCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCS
T ss_pred CceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEec
Confidence 3568888884 677888999999999999999999999999999999999999 556999999999999998754
No 95
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.93 E-value=7.1e-09 Score=63.72 Aligned_cols=75 Identities=8% Similarity=0.031 Sum_probs=65.3
Q ss_pred CCCcEEEEEEecCC--CEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCe---e----cCCCCCccccCCCCCCEE
Q 048514 10 DQHFINLVVKGQDN--DPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGN---R----FPHIRTPDQLGLKDGDEI 80 (89)
Q Consensus 10 ~~~~I~i~v~~~~~--~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~---~----l~~~~Tp~~l~medgD~I 80 (89)
.+..|+|.|.+... ..+.++|.+++++..|+...+.+.|+|++++|++|.|+ . +.++.|..++++++|++|
T Consensus 11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~I 90 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRL 90 (97)
T ss_dssp CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEE
T ss_pred CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEE
Confidence 45688999987544 46899999999999999999999999999999999883 3 377889999999999999
Q ss_pred EEEe
Q 048514 81 VATF 84 (89)
Q Consensus 81 dv~~ 84 (89)
.++-
T Consensus 91 hlvd 94 (97)
T 2kj6_A 91 HIID 94 (97)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8863
No 96
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.92 E-value=2.4e-09 Score=66.49 Aligned_cols=73 Identities=12% Similarity=0.044 Sum_probs=65.3
Q ss_pred CcEEEEEEecCCCEEEEEEe-ccchHHHHHHHHHhhhCCCCCcEeEEECCe-----------e----cCCCCCccccCCC
Q 048514 12 HFINLVVKGQDNDPLYFEFR-RDWEIKKLLITYCEKKDAQYGTFPFLINGN-----------R----FPHIRTPDQLGLK 75 (89)
Q Consensus 12 ~~I~i~v~~~~~~~~~f~i~-~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~-----------~----l~~~~Tp~~l~me 75 (89)
..|.|+|++.+|.. .+.|. +++++..|++..+++.+++++..+++|.|. . +.++.|..++++.
T Consensus 6 ~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~ 84 (107)
T 1wf9_A 6 SGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLA 84 (107)
T ss_dssp CCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC
T ss_pred CeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCC
Confidence 44899999998976 68899 999999999999999999999999999998 4 4788899999999
Q ss_pred CCCEEEEEee
Q 048514 76 DGDEIVATFY 85 (89)
Q Consensus 76 dgD~Idv~~~ 85 (89)
+||+|++...
T Consensus 85 ~G~~L~l~~~ 94 (107)
T 1wf9_A 85 HGSMVYLAYE 94 (107)
T ss_dssp TTCEEECCCS
T ss_pred CCCEEEEEeC
Confidence 9999988653
No 97
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=98.89 E-value=1.7e-10 Score=78.72 Aligned_cols=71 Identities=11% Similarity=0.137 Sum_probs=0.0
Q ss_pred EEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 14 I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
|.|.|++.+|+.+.+.|.+++++..|+...++..|+|++++||+|+|+.|.++.|.. ++++|++++++.||
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG 71 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGG 71 (189)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCC
Confidence 467788888999999999999999999999999999999999999999999988876 99999999999997
No 98
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.88 E-value=3.3e-09 Score=78.42 Aligned_cols=79 Identities=8% Similarity=0.068 Sum_probs=69.7
Q ss_pred CCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHh---hhCCCCCcEeEEECCeecCCCCCccccCCCCCCEE-EEEeee
Q 048514 11 QHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCE---KKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEI-VATFYA 86 (89)
Q Consensus 11 ~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~---~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~I-dv~~~q 86 (89)
...|+|.|++.+|+.+.+.|.+++++..|+...++ +.|++.+.+||+|.|+.|.++.|..++++.+|++| .++.+.
T Consensus 5 ~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~ 84 (368)
T 1oqy_A 5 SSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 84 (368)
T ss_dssp -CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECC
T ss_pred CceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecC
Confidence 45688999988899999999999999999999998 56799999999999999999999999999999998 666665
Q ss_pred cCC
Q 048514 87 GGA 89 (89)
Q Consensus 87 ~GG 89 (89)
.||
T Consensus 85 ~~~ 87 (368)
T 1oqy_A 85 KAG 87 (368)
T ss_dssp CSS
T ss_pred CCC
Confidence 553
No 99
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.86 E-value=1.4e-08 Score=61.57 Aligned_cols=72 Identities=10% Similarity=-0.017 Sum_probs=63.0
Q ss_pred cEEEEEEecCCC-EEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECC---ee----cCCCCCccccCCCCCCEEEEEe
Q 048514 13 FINLVVKGQDND-PLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLING---NR----FPHIRTPDQLGLKDGDEIVATF 84 (89)
Q Consensus 13 ~I~i~v~~~~~~-~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG---~~----l~~~~Tp~~l~medgD~Idv~~ 84 (89)
.|+|.|.+.... ...+++.+++++..|+...+++.|+|++++|++|.| .. +.++.|..++++++|++|+|.-
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 488988875443 578999999999999999999999999999999986 43 4788999999999999999864
No 100
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=98.86 E-value=2.9e-08 Score=62.84 Aligned_cols=73 Identities=14% Similarity=0.201 Sum_probs=63.9
Q ss_pred CcEEEEEEecCCC-EEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECC---e---ec-CCCCCccccCCCCCCEEEEE
Q 048514 12 HFINLVVKGQDND-PLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLING---N---RF-PHIRTPDQLGLKDGDEIVAT 83 (89)
Q Consensus 12 ~~I~i~v~~~~~~-~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG---~---~l-~~~~Tp~~l~medgD~Idv~ 83 (89)
..|+|.|.+..+. .+.+++.++.++..|+...+.+.|+|++++|++|.| . +| .++.|..++++++|++|+|.
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 4689999875443 578999999999999999999999999999999977 4 33 68889999999999999987
Q ss_pred e
Q 048514 84 F 84 (89)
Q Consensus 84 ~ 84 (89)
-
T Consensus 85 d 85 (122)
T 1t0y_A 85 D 85 (122)
T ss_dssp E
T ss_pred e
Confidence 5
No 101
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=1.7e-08 Score=60.75 Aligned_cols=72 Identities=4% Similarity=0.062 Sum_probs=63.8
Q ss_pred CCcEEEEEEecCCCEE--EE-EEeccchHHHHHHHHHh-hhCCCCCcEeEEEC--CeecCCCCCccccCCCCCCEEEE
Q 048514 11 QHFINLVVKGQDNDPL--YF-EFRRDWEIKKLLITYCE-KKDAQYGTFPFLIN--GNRFPHIRTPDQLGLKDGDEIVA 82 (89)
Q Consensus 11 ~~~I~i~v~~~~~~~~--~f-~i~~~t~l~kL~~~y~~-~~g~~~~~~rF~fd--G~~l~~~~Tp~~l~medgD~Idv 82 (89)
-..|.|.|++..|+.. .+ .|.+++++..|++..++ +.|++++..||+|. |+.|.++.|.+++++.+|++|.+
T Consensus 8 ~~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 8 MKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CCCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred eEEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 3458999998877664 47 89999999999999999 47999999999987 99999999999999999999876
No 102
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=98.78 E-value=3.3e-08 Score=59.39 Aligned_cols=71 Identities=4% Similarity=-0.088 Sum_probs=61.5
Q ss_pred EEEEEEec--CCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEE-------CCeecCCCCCccccCCCCCCEEEEEe
Q 048514 14 INLVVKGQ--DNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLI-------NGNRFPHIRTPDQLGLKDGDEIVATF 84 (89)
Q Consensus 14 I~i~v~~~--~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~f-------dG~~l~~~~Tp~~l~medgD~Idv~~ 84 (89)
|+|.|... .......++.++.++..|++....+.|+|++++|++| .|+.+.++.|..++++++|.+|+++-
T Consensus 3 V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd 82 (86)
T 4b6w_A 3 VKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVD 82 (86)
T ss_dssp EEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEe
Confidence 56666532 2345579999999999999999999999999999996 58889999999999999999999874
No 103
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.77 E-value=9.2e-09 Score=61.29 Aligned_cols=71 Identities=13% Similarity=0.143 Sum_probs=61.0
Q ss_pred EEEEEEecCCCEEEEE-EeccchHHHHHHHHHhhhCCCCCcEeEEEC--CeecC---CCCCccccCCCCCCEEEEEee
Q 048514 14 INLVVKGQDNDPLYFE-FRRDWEIKKLLITYCEKKDAQYGTFPFLIN--GNRFP---HIRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 14 I~i~v~~~~~~~~~f~-i~~~t~l~kL~~~y~~~~g~~~~~~rF~fd--G~~l~---~~~Tp~~l~medgD~Idv~~~ 85 (89)
|.|+|++.+|+.+ +. +..++++..|+...+++.|++++.+||+|. |+.+. ++.|.+++|+.+|++|.|...
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 4678888888654 67 899999999999999999999999999987 47774 578999999999999988654
No 104
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.64 E-value=3.2e-07 Score=55.58 Aligned_cols=76 Identities=8% Similarity=0.154 Sum_probs=64.2
Q ss_pred CCCcEEEEEEe---cCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCe-----e--c-CCCCCccccCCCCCC
Q 048514 10 DQHFINLVVKG---QDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGN-----R--F-PHIRTPDQLGLKDGD 78 (89)
Q Consensus 10 ~~~~I~i~v~~---~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~-----~--l-~~~~Tp~~l~medgD 78 (89)
....|+|.|.+ .++..+..++.++.++.+|+...+...|+++..+|+.|.+. . + .+..|..+++++|||
T Consensus 6 ~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~ 85 (97)
T 1wjn_A 6 SGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGD 85 (97)
T ss_dssp SSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTC
T ss_pred cCccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCC
Confidence 34578888875 35778899999999999999999999999999999998731 2 3 567889999999999
Q ss_pred EEEEEee
Q 048514 79 EIVATFY 85 (89)
Q Consensus 79 ~Idv~~~ 85 (89)
+|+|...
T Consensus 86 ~I~V~d~ 92 (97)
T 1wjn_A 86 CLLVRWS 92 (97)
T ss_dssp EEEEECC
T ss_pred EEEEEec
Confidence 9998763
No 105
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.48 E-value=4.2e-07 Score=65.95 Aligned_cols=74 Identities=12% Similarity=0.042 Sum_probs=65.4
Q ss_pred CCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEE---ECCeecCCCCCccccCCCCCCEEEEEee
Q 048514 11 QHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFL---INGNRFPHIRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 11 ~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~---fdG~~l~~~~Tp~~l~medgD~Idv~~~ 85 (89)
.+.|+|+|+. .|+.+.+.|.+++++..|++..++..|++++..|++ |.|..+.++.|..++++.+|.+|.++-.
T Consensus 3 ~~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs 79 (320)
T 3shq_A 3 VKEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGS 79 (320)
T ss_dssp -CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECC
T ss_pred CceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEcc
Confidence 4568888886 688889999999999999999999999999999999 8999999999999999999999987643
No 106
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.48 E-value=6.7e-07 Score=55.17 Aligned_cols=71 Identities=4% Similarity=0.002 Sum_probs=60.5
Q ss_pred EEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEE-CCeecCCCCCccccCCCCCCEEEEEee
Q 048514 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLI-NGNRFPHIRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 14 I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~f-dG~~l~~~~Tp~~l~medgD~Idv~~~ 85 (89)
+.+++. ..|+.+.+.|.++++...|+...+++.|++++..|++| .|.++.++.|..++++..|++|++++.
T Consensus 10 ~~~~vk-~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lvl~ 81 (100)
T 2dzm_A 10 LDFRVE-YRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLTP 81 (100)
T ss_dssp EEEEEE-CSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEECCS
T ss_pred EEEEEE-eCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEEec
Confidence 444444 47889999999999999999999999999999999986 333488888999999999999988653
No 107
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.12 E-value=1.8e-06 Score=51.05 Aligned_cols=70 Identities=19% Similarity=0.162 Sum_probs=56.4
Q ss_pred cEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCee-----cCCCCCccccCCCCCCEEEEE
Q 048514 13 FINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNR-----FPHIRTPDQLGLKDGDEIVAT 83 (89)
Q Consensus 13 ~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~-----l~~~~Tp~~l~medgD~Idv~ 83 (89)
.+.|+|++.+|. ..+.+.+++++..|++..++..+++...+.++++-.+ ...+.|..++|+..||+|.+.
T Consensus 4 ~m~lRvrs~~G~-~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 4 SIIIRVQSPDGV-KRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCEEECSSEE-EECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred cEEEEEECCCCC-EEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 478999998884 3566889999999999999999998777655555444 347889999999999998764
No 108
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=98.07 E-value=1.8e-05 Score=48.06 Aligned_cols=72 Identities=7% Similarity=0.009 Sum_probs=66.7
Q ss_pred cEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEe
Q 048514 13 FINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATF 84 (89)
Q Consensus 13 ~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~ 84 (89)
-+.+.|...+++...++|.++++|..+.+.-|+++|++.++..+.|+++.|+.+..-.-.||-+|..+++..
T Consensus 9 ~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~ 80 (90)
T 2al3_A 9 GSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVP 80 (90)
T ss_dssp -CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEEC
T ss_pred ccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEE
Confidence 347888888999999999999999999999999999999999999999999999999999999999998864
No 109
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.56 E-value=0.00047 Score=40.93 Aligned_cols=71 Identities=10% Similarity=0.180 Sum_probs=60.6
Q ss_pred CcEEEEEEe--cCCCEEEEEEeccchHHHHHHHHHhhhCCCC-----CcEeEEECCeecCCCCCccccCCCCCCEEEE
Q 048514 12 HFINLVVKG--QDNDPLYFEFRRDWEIKKLLITYCEKKDAQY-----GTFPFLINGNRFPHIRTPDQLGLKDGDEIVA 82 (89)
Q Consensus 12 ~~I~i~v~~--~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~-----~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv 82 (89)
.+|+|.+.- ..++.+-++|...-++++|.+...+.++++. ..+|..-.|..|.++++.++.++.+||.|++
T Consensus 3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 467777764 5788899999999999999999999999864 3456666799999999999999999999986
No 110
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.44 E-value=0.00091 Score=40.74 Aligned_cols=52 Identities=6% Similarity=-0.061 Sum_probs=45.3
Q ss_pred cEEEEEEecC-CCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecC
Q 048514 13 FINLVVKGQD-NDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFP 64 (89)
Q Consensus 13 ~I~i~v~~~~-~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~ 64 (89)
..-|+|-+.+ ...+++.|.++.++..+++..+++.|+++.+.+++|.|+.+.
T Consensus 12 rkvvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 12 RMVIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLV 64 (94)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC
T ss_pred ceeEEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccc
Confidence 4567777765 456689999999999999999999999999999999998876
No 111
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.26 E-value=0.0042 Score=36.33 Aligned_cols=73 Identities=8% Similarity=0.073 Sum_probs=59.1
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEEC--Ceec---CCCCCccccCCCCCCEEEEE
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLIN--GNRF---PHIRTPDQLGLKDGDEIVAT 83 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fd--G~~l---~~~~Tp~~l~medgD~Idv~ 83 (89)
..+..+|.|+-.+|..+.-+...+++++.|++.... .+.+...++|.-. .+.+ ..+.|.+++|+...+++-|-
T Consensus 4 ~~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp CCCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 456778888889999998888999999999986655 6677788888843 6667 35789999999999988774
No 112
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.19 E-value=0.0012 Score=39.72 Aligned_cols=65 Identities=12% Similarity=0.194 Sum_probs=56.9
Q ss_pred CcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEEC---CeecCCCCCccccCCCC
Q 048514 12 HFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLIN---GNRFPHIRTPDQLGLKD 76 (89)
Q Consensus 12 ~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fd---G~~l~~~~Tp~~l~med 76 (89)
..+++.|.-.-.+....+|.|..||+.|+-+.|++.+.+++.+.|+=| ++.|.-+.+..+|||.+
T Consensus 9 ~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 9 KTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp SCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred cEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 567777766556677899999999999999999999999999988876 78888899999999986
No 113
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=97.06 E-value=0.0098 Score=33.66 Aligned_cols=67 Identities=21% Similarity=0.121 Sum_probs=51.7
Q ss_pred cEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 13 FINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 13 ~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
.++|.|.+..+ ...+.+...+++..|.+.. +++...+.+..||+-+..+. -+.+||.|+++.--.||
T Consensus 4 ~m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 4 GMKFTVITDDG-KKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYGG 70 (70)
T ss_dssp CEEEEEEETTE-EEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTCC
T ss_pred eEEEEEeCccC-ceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccccC
Confidence 36777765432 2356677778899888765 67788889999999998765 69999999999888777
No 114
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=96.88 E-value=0.0071 Score=34.45 Aligned_cols=57 Identities=26% Similarity=0.331 Sum_probs=45.4
Q ss_pred EEEeccchHHHHHHHHHhhhCCC--CCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 28 FEFRRDWEIKKLLITYCEKKDAQ--YGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 28 f~i~~~t~l~kL~~~y~~~~g~~--~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
+.+ ...++..|.+..+.+.++. ...+.+..||+.+...+| -+.|||+|.++.--.||
T Consensus 16 ~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~----~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 16 FFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNT----PLKDGDVISLLPPVCGG 74 (74)
T ss_dssp EEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTC----CCCTTCEEEEECCBCCC
T ss_pred Eee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCc----CCCCCCEEEEECCCCCC
Confidence 445 5689999999998765543 267899999999875555 49999999999988887
No 115
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=96.74 E-value=0.0079 Score=41.42 Aligned_cols=73 Identities=12% Similarity=0.067 Sum_probs=56.4
Q ss_pred cEEEEEEecC--CCEEEEEEeccchHHHHHHHHHhhhCCCCC-cEeEEE-C----CeecCC-CCCccccCCCCCCEEEEE
Q 048514 13 FINLVVKGQD--NDPLYFEFRRDWEIKKLLITYCEKKDAQYG-TFPFLI-N----GNRFPH-IRTPDQLGLKDGDEIVAT 83 (89)
Q Consensus 13 ~I~i~v~~~~--~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~-~~rF~f-d----G~~l~~-~~Tp~~l~medgD~Idv~ 83 (89)
.+.|++.... ...+.+.+.+..++..|++.-|+.++++.+ .+|++. . ...|.+ +.|.+++++.+|+.|-+-
T Consensus 139 P~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE 218 (231)
T 3jyu_A 139 LLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIE 218 (231)
T ss_dssp CEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred cceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEE
Confidence 3455554322 123467889999999999999999999987 799997 2 456765 689999999999998776
Q ss_pred ee
Q 048514 84 FY 85 (89)
Q Consensus 84 ~~ 85 (89)
++
T Consensus 219 ~r 220 (231)
T 3jyu_A 219 PQ 220 (231)
T ss_dssp EC
T ss_pred Ee
Confidence 55
No 116
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.73 E-value=0.019 Score=36.13 Aligned_cols=73 Identities=14% Similarity=0.130 Sum_probs=58.3
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEEC--CeecC---CCCCccccCCCCCCEEEEE
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLIN--GNRFP---HIRTPDQLGLKDGDEIVAT 83 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fd--G~~l~---~~~Tp~~l~medgD~Idv~ 83 (89)
..+..+|.|+-.+|..+.-+...+++++.|++..... +.+...+.|+-. .+.+. .+.|.+++||-....+.|.
T Consensus 40 ~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 40 NGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp SSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 4567999999999999999999999999999877655 666677877743 66673 4789999999987766553
No 117
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=96.63 E-value=0.0056 Score=41.78 Aligned_cols=77 Identities=12% Similarity=0.011 Sum_probs=57.5
Q ss_pred cEEEEEEecC--CCEEEEEEeccchHHHHHHHHHhhhCCCCC-cEeEEE-C----CeecCC-CCCccccCCCCCCEEEEE
Q 048514 13 FINLVVKGQD--NDPLYFEFRRDWEIKKLLITYCEKKDAQYG-TFPFLI-N----GNRFPH-IRTPDQLGLKDGDEIVAT 83 (89)
Q Consensus 13 ~I~i~v~~~~--~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~-~~rF~f-d----G~~l~~-~~Tp~~l~medgD~Idv~ 83 (89)
.+.|++.... ...+.+.+.+..++..|++.-|+.++++.+ .+|++. . ...|.. +.|.+++++.+|+.|-+-
T Consensus 127 P~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE 206 (217)
T 4a3p_A 127 LTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIE 206 (217)
T ss_dssp CEEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEE
T ss_pred ccEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEE
Confidence 3445554322 133578889999999999999999999986 799885 2 455655 569999999999999887
Q ss_pred eeecCC
Q 048514 84 FYAGGA 89 (89)
Q Consensus 84 ~~q~GG 89 (89)
.+...|
T Consensus 207 ~r~~dg 212 (217)
T 4a3p_A 207 QKNEDG 212 (217)
T ss_dssp ECCCC-
T ss_pred EecCCC
Confidence 665443
No 118
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.60 E-value=0.023 Score=34.78 Aligned_cols=72 Identities=10% Similarity=0.172 Sum_probs=56.5
Q ss_pred CCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEEC--CeecC--CCCCccccCCCCCCEEEEE
Q 048514 11 QHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLIN--GNRFP--HIRTPDQLGLKDGDEIVAT 83 (89)
Q Consensus 11 ~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fd--G~~l~--~~~Tp~~l~medgD~Idv~ 83 (89)
...++|.|+-.+|..+.-+...+++++.|++... ..+.....++|.-. .+.+. .+.|.+++||....++.|.
T Consensus 21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~-~~~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve 96 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMM-KVGYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVE 96 (109)
T ss_dssp SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHH-HHTCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHH-hcCCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEE
Confidence 3579999999999998888899999999988655 44555667777643 55564 4789999999999888664
No 119
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.37 E-value=0.071 Score=32.65 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=59.4
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEEC--CeecC---CCCCccccCCCCCCEEEEEe
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLIN--GNRFP---HIRTPDQLGLKDGDEIVATF 84 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fd--G~~l~---~~~Tp~~l~medgD~Idv~~ 84 (89)
.....+|.|+-.+|..+.-+...+++++.|++......+.+...+.|.-. -+.+. .+.|.+++||-...++.|..
T Consensus 10 ~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 10 RSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 34568888888999999999999999999999887777776677777653 44454 36799999999988777654
No 120
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=96.31 E-value=0.012 Score=35.09 Aligned_cols=68 Identities=21% Similarity=0.261 Sum_probs=46.9
Q ss_pred CcEEEEEEecCCCEEEEEEecc-chHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 12 HFINLVVKGQDNDPLYFEFRRD-WEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 12 ~~I~i~v~~~~~~~~~f~i~~~-t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
..|+|.| +|+. +.+... .++..|.+.. +++...+.+..||+.+...+ -.+.-+.|||.|+++.--.||
T Consensus 19 ~~M~I~v---NGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~~-~~~~~L~dGD~Vei~~~V~GG 87 (87)
T 1tyg_B 19 GRHMLQL---NGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKER-YHEVELCDRDVIEIVHFVGGG 87 (87)
T ss_dssp ---CEEE---TTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGGG-TTTSBCCSSSEEEEEEECCC-
T ss_pred cceEEEE---CCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChhh-cCCcCCCCCCEEEEEcccccC
Confidence 3455554 6665 444555 7888888765 67788889999999997532 223359999999999887776
No 121
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=96.18 E-value=0.02 Score=36.56 Aligned_cols=69 Identities=14% Similarity=0.243 Sum_probs=54.9
Q ss_pred EEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCC-cEeEEE-----------------------------------
Q 048514 15 NLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYG-TFPFLI----------------------------------- 58 (89)
Q Consensus 15 ~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~-~~rF~f----------------------------------- 58 (89)
.|+|+-.||....+.|..+.+...++...|.+.|++.. .+-|..
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 56777789999999999999999999999999999743 222221
Q ss_pred ---CCeecCCCCCccccCCCCCCEEEEE
Q 048514 59 ---NGNRFPHIRTPDQLGLKDGDEIVAT 83 (89)
Q Consensus 59 ---dG~~l~~~~Tp~~l~medgD~Idv~ 83 (89)
.+..|.+..|..+.|+.++|++-..
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLR 120 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLR 120 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEE
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEE
Confidence 1367777889999999999987654
No 122
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=95.88 E-value=0.02 Score=31.84 Aligned_cols=61 Identities=20% Similarity=0.263 Sum_probs=45.2
Q ss_pred CCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 22 DNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 22 ~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
+|+.+ .+....++..|.+.. +++...+.+..||+.+...+ -.+--+.|||.|+++.--.||
T Consensus 6 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~-~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 6 NDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPREQ-WAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp SSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHHH-HTTCCCCTTEEECEEESCCCC
T ss_pred CCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCchh-cCCcCCCCCCEEEEEeecccC
Confidence 56654 445667888888765 57788889999999987521 112348999999999887777
No 123
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=95.73 E-value=0.044 Score=32.48 Aligned_cols=49 Identities=6% Similarity=-0.038 Sum_probs=43.1
Q ss_pred CCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCe
Q 048514 11 QHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGN 61 (89)
Q Consensus 11 ~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~ 61 (89)
+..++|+|... ..+.++|.+..+++.|.+..+++.+++.+.+++.|.-.
T Consensus 3 ~~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 3 HMAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp SSCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred CCcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 34589999875 68999999999999999999999999999999998643
No 124
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=95.69 E-value=0.092 Score=30.44 Aligned_cols=61 Identities=16% Similarity=0.179 Sum_probs=47.3
Q ss_pred CEEEEEEeccchHHHHHHHHHhhhC-CC----------CCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 24 DPLYFEFRRDWEIKKLLITYCEKKD-AQ----------YGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 24 ~~~~f~i~~~t~l~kL~~~y~~~~g-~~----------~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
.+..+.+....++..|.+..+.++. +. ...+.+..||+.+.. +| -+.|||.|.++.--.||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-~~----~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-GE----ATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-TS----BCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-Cc----ccCCCCEEEEECCCCCC
Confidence 5667777777899999999887653 11 124789999999975 34 49999999999988887
No 125
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=95.58 E-value=0.014 Score=37.14 Aligned_cols=62 Identities=5% Similarity=0.096 Sum_probs=47.4
Q ss_pred CCCCCCCCCcEEEEEEecC------C---------CEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCC
Q 048514 4 SPDNIPDQHFINLVVKGQD------N---------DPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPH 65 (89)
Q Consensus 4 ~~~~~~~~~~I~i~v~~~~------~---------~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~ 65 (89)
.++..+.--+++|+|.+.+ | ....|+|.++++|..|+...++..|++.+.+|||.=-.|=+.
T Consensus 21 rKEr~EahlY~~vkv~t~~~f~~~~gfDL~~~~~~~~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~RqN~ 97 (130)
T 2kvr_A 21 RKERQEAHLYMQVQIVAEDQFCGHQGNDMYDEEKVKYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNG 97 (130)
T ss_dssp TCCCCSSTTCCEEEEECCSTTTTCCCCSSCCSSSCSCEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCCCBTT
T ss_pred HHHHHHHhceeEEEEecHHHHHhccCccCcCCccCCcceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeecCCCC
Confidence 3455556668888886532 2 234799999999999999999999999999999986444333
No 126
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=95.27 E-value=0.019 Score=32.98 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=45.5
Q ss_pred CCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 22 DNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 22 ~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
+|+...+ ..+++..|.+ ..+++.+.+-...||.-|... .-++--+.|||.|+++.--.||
T Consensus 6 NG~~~e~---~~~Tl~~LL~----~l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~~VgGG 65 (73)
T 2kl0_A 6 NGEQREV---QSASVAALMT----ELDCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILTPRQGG 65 (73)
T ss_dssp TTEEECC---CCSBHHHHHH----HTTCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEECCCCCC
T ss_pred CCEEEEc---CCCcHHHHHH----HcCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEccccCC
Confidence 5665444 5678888876 568888888999999988743 2334568999999999888887
No 127
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=95.17 E-value=0.09 Score=30.12 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=44.1
Q ss_pred CEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 24 DPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 24 ~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
....+.+...++++.|.+ ..|++++.+-...||+.+..++ +-+||.|+++.--.||
T Consensus 11 ~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~V~G~ 66 (74)
T 2l32_A 11 ETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRLIKGG 66 (74)
T ss_dssp SEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSSCSCC
T ss_pred cceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH------CCCCCEEEEEEeeccc
Confidence 345678888888887764 6799999999999999888776 2359999998766665
No 128
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=95.09 E-value=0.31 Score=34.18 Aligned_cols=68 Identities=10% Similarity=0.134 Sum_probs=49.3
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCC-CcEeEEE--CCee--cCCCCCccccCCCCCC
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQY-GTFPFLI--NGNR--FPHIRTPDQLGLKDGD 78 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~-~~~rF~f--dG~~--l~~~~Tp~~l~medgD 78 (89)
.+..+.++|.-.|| .+.|.|..+++-+.|++..|++.|+.. +-+-+.| +|.. |..+.+..+.+...+.
T Consensus 19 ~~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~ 91 (314)
T 1h4r_A 19 QPKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEE 91 (314)
T ss_dssp --CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSS
T ss_pred CCCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCC
Confidence 46789999998898 788999999999999999999999953 4444444 4543 6666666655443333
No 129
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=94.86 E-value=0.036 Score=32.17 Aligned_cols=63 Identities=19% Similarity=0.325 Sum_probs=46.1
Q ss_pred CCCEEEEEEeccchHHHHHHHHHhhhCCC-CCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 22 DNDPLYFEFRRDWEIKKLLITYCEKKDAQ-YGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 22 ~~~~~~f~i~~~t~l~kL~~~y~~~~g~~-~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
+|+...+......++..|.+.+ +++ ...+-...||+-|... .-++--|.|||.|+++.--.||
T Consensus 6 NGe~~e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 6 NGKPSTVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp TTEEEECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCS
T ss_pred CCEEEEcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCC
Confidence 5665443211567888888754 777 7888899999988754 3444568999999999888877
No 130
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=94.76 E-value=0.26 Score=29.43 Aligned_cols=50 Identities=10% Similarity=0.008 Sum_probs=41.7
Q ss_pred CCCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCC-CcEeEEEC
Q 048514 9 PDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQY-GTFPFLIN 59 (89)
Q Consensus 9 ~~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~-~~~rF~fd 59 (89)
+.+..|+||+. .+|..+.+++.++.++..|.+..+++++++. ..+.+.|-
T Consensus 2 ~~~~~vkvK~~-~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~ 52 (89)
T 1vd2_A 2 PLGSQVRVKAY-YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWI 52 (89)
T ss_dssp CCSSCEEEEEE-SSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEEC
T ss_pred CCCCeEEEEEE-eCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEE
Confidence 34567889987 4688889999999999999999999999875 44887774
No 131
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=94.73 E-value=0.22 Score=29.50 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=44.4
Q ss_pred CEEEEEEeccchHHHHHHHHHhhhC-C----------CCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 24 DPLYFEFRRDWEIKKLLITYCEKKD-A----------QYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 24 ~~~~f~i~~~t~l~kL~~~y~~~~g-~----------~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
....+.+....++..|.+..+.++. + ....+.+..||+.+.. +--+.|||.|.++.--.||
T Consensus 27 ~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~dGDeV~i~ppv~GG 98 (98)
T 1vjk_A 27 DEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELKDGDVVGVFPPVSGG 98 (98)
T ss_dssp SEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCCTTCEEEEESCC---
T ss_pred CeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCCCCCEEEEECCCCCC
Confidence 4567777777899999998887642 1 1356789999998863 3459999999999887776
No 132
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=94.71 E-value=0.069 Score=29.41 Aligned_cols=60 Identities=18% Similarity=0.297 Sum_probs=44.1
Q ss_pred CCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 22 DNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 22 ~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
+|+.+. + ...++..|.+.. +++...+.+..||+.+..++ -.+.-+.|||.|+++.--.||
T Consensus 5 Ng~~~~--~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~-~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 5 NGEPRP--L-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGLE-VPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp TTEEEC--C-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGGG-CCCCCCCTTCEEEEEECCCC-
T ss_pred CCEEEE--c-CCCcHHHHHHHc----CCCCCcEEEEECCEECCccc-cCCcCCCCCCEEEEEeecccC
Confidence 566544 4 567888888766 56778889999999987531 122358999999999887777
No 133
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=94.70 E-value=0.084 Score=29.94 Aligned_cols=59 Identities=17% Similarity=0.116 Sum_probs=43.0
Q ss_pred EEEEEEeccchHHHHHHHHHhhhC-----CCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 25 PLYFEFRRDWEIKKLLITYCEKKD-----AQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 25 ~~~f~i~~~t~l~kL~~~y~~~~g-----~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
+..+. ....++..|.+..+.++. ++...+.+..||+.+.. +--+.+||.|.++.--.||
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence 44444 456789999888876532 23346789999998852 3468999999999888887
No 134
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=94.59 E-value=0.073 Score=29.97 Aligned_cols=59 Identities=8% Similarity=0.010 Sum_probs=44.3
Q ss_pred EEEEEEeccchHHHHHHHHHhhhCCCCCcE--eEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 25 PLYFEFRRDWEIKKLLITYCEKKDAQYGTF--PFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 25 ~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~--rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
...+.+....++..|.+.....+. ..+.+ .+..||+.+..+ .-+.|||.|+++.--.||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 17 QEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPPVSGG 77 (77)
T ss_dssp EEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEECSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEECCCCCC
Confidence 445666667899999998877642 12334 899999999753 468999999999887777
No 135
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=94.34 E-value=0.063 Score=32.67 Aligned_cols=59 Identities=19% Similarity=0.274 Sum_probs=41.7
Q ss_pred EEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEEC----CeecC--------------CCCCccccCCCCCCEEEEE
Q 048514 25 PLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLIN----GNRFP--------------HIRTPDQLGLKDGDEIVAT 83 (89)
Q Consensus 25 ~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fd----G~~l~--------------~~~Tp~~l~medgD~Idv~ 83 (89)
.+.+.+.++.+|+.+++..|++......+=.+... |+.|. -+.+..+||++||++|.|.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 44678899999999999999965554433333333 44443 2345679999999999884
No 136
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=94.19 E-value=0.29 Score=28.11 Aligned_cols=61 Identities=21% Similarity=0.210 Sum_probs=43.1
Q ss_pred EEEeccchHHHHHHHHHhhhC------C-----CCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 28 FEFRRDWEIKKLLITYCEKKD------A-----QYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 28 f~i~~~t~l~kL~~~y~~~~g------~-----~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
+.+....++..|.+..+.++. + -...+.+..||+.+...+ -.+.-+.+||.|.++.--.||
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEECCTTCC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEeCCCCCC
Confidence 345556899999998887742 1 125678999999887321 122348999999999887777
No 137
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=93.85 E-value=0.19 Score=29.79 Aligned_cols=74 Identities=15% Similarity=0.093 Sum_probs=59.2
Q ss_pred CcEEEEEEe-cC-CCEE-EEEEeccchHHHHHHHHHhhhCCCCCcEeE-EECCeecCCCCCccccCCCCCCEEEEEee
Q 048514 12 HFINLVVKG-QD-NDPL-YFEFRRDWEIKKLLITYCEKKDAQYGTFPF-LINGNRFPHIRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 12 ~~I~i~v~~-~~-~~~~-~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF-~fdG~~l~~~~Tp~~l~medgD~Idv~~~ 85 (89)
.+++.++.- .| .... .++|-..+||..+.+.-|+.++++..+--. .-||.=|++.+|....-|+.|..+.+..+
T Consensus 9 ~kVtFkItltSdpklpfkvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPR 86 (92)
T 1j0g_A 9 SKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPR 86 (92)
T ss_dssp CEEEEEEEETTSTTCCEEEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEEC
T ss_pred ceEEEEEEEccCCCCCceEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEeccc
Confidence 567777753 23 3333 688999999999999999999998866544 45699999999999999999998888743
No 138
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=93.81 E-value=0.58 Score=29.24 Aligned_cols=71 Identities=11% Similarity=0.184 Sum_probs=52.6
Q ss_pred CCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhh-CCCCCcEeEEE--CCeecCC-CCCccccCCCCCCEEE
Q 048514 11 QHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKK-DAQYGTFPFLI--NGNRFPH-IRTPDQLGLKDGDEIV 81 (89)
Q Consensus 11 ~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~-g~~~~~~rF~f--dG~~l~~-~~Tp~~l~medgD~Id 81 (89)
....+|.|+-.||..+.-+...+++++.|++...... +.+...+.|+- -.+.+.+ +.|.+++||-..-+|.
T Consensus 50 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl~ 124 (127)
T 1s3s_G 50 EPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ 124 (127)
T ss_dssp SCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEEE
Confidence 3456777777899999999999999999998776643 34456666664 3566653 7899999999865543
No 139
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=92.89 E-value=0.4 Score=27.88 Aligned_cols=60 Identities=8% Similarity=0.057 Sum_probs=43.3
Q ss_pred EEEeccchHHHHHHHHHhhhCC------C-------CCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 28 FEFRRDWEIKKLLITYCEKKDA------Q-------YGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 28 f~i~~~t~l~kL~~~y~~~~g~------~-------~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
+.. ...++..|++..+.++.- + ...+.+..||+.+...+-+ +.-+.+||+|.++.--.||
T Consensus 21 ~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 21 VSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAIADGDSVTILPAVAGG 93 (93)
T ss_dssp EEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBCCTTCEEEEEECCTTC
T ss_pred Eec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCCCCCCEEEEECCCCCC
Confidence 444 457899999998877631 1 1258999999998753222 2348999999999988887
No 140
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=92.62 E-value=0.31 Score=37.21 Aligned_cols=74 Identities=24% Similarity=0.217 Sum_probs=57.2
Q ss_pred CCcEEEEEEec--CCCEE----EEEEeccchHHHHHHHHHhhhCCCCCcEeEEEC------CeecC-CCCCcccc--CCC
Q 048514 11 QHFINLVVKGQ--DNDPL----YFEFRRDWEIKKLLITYCEKKDAQYGTFPFLIN------GNRFP-HIRTPDQL--GLK 75 (89)
Q Consensus 11 ~~~I~i~v~~~--~~~~~----~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fd------G~~l~-~~~Tp~~l--~me 75 (89)
...|.|.++-. ..+.+ ++-|.++++++.|....+++.|++.++=-.+|. -++|. .+.|..+. ++.
T Consensus 128 ~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~ 207 (530)
T 2ylm_A 128 DHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELM 207 (530)
T ss_dssp TTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCC
T ss_pred CCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhccc
Confidence 34566666654 45565 588999999999999999999998865433444 55677 78999999 999
Q ss_pred CCCEEEEEe
Q 048514 76 DGDEIVATF 84 (89)
Q Consensus 76 dgD~Idv~~ 84 (89)
+||+|-+..
T Consensus 208 ~GdII~fQ~ 216 (530)
T 2ylm_A 208 DGDIIVFQK 216 (530)
T ss_dssp TTEEEEEEE
T ss_pred CCCEEEEEe
Confidence 999886654
No 141
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=92.61 E-value=0.15 Score=38.91 Aligned_cols=37 Identities=5% Similarity=0.083 Sum_probs=33.5
Q ss_pred EEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCee
Q 048514 26 LYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNR 62 (89)
Q Consensus 26 ~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~ 62 (89)
..|+|.+++++..|++..|+..|++.+.+|||.=-.|
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~R 74 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQAR 74 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEEC
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcC
Confidence 4799999999999999999999999999999975443
No 142
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=92.10 E-value=1.4 Score=30.35 Aligned_cols=61 Identities=15% Similarity=0.078 Sum_probs=45.1
Q ss_pred cEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCC-CcEeEEE---CCe--ecCCCCCccccCC
Q 048514 13 FINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQY-GTFPFLI---NGN--RFPHIRTPDQLGL 74 (89)
Q Consensus 13 ~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~-~~~rF~f---dG~--~l~~~~Tp~~l~m 74 (89)
.|.++|.-.|| .+.|.|.++++-+.|++..|++.|+.. .-+-+.| +|. .|..+.+..+.+.
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~ 67 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDV 67 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCB
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhcc
Confidence 37788888888 678999999999999999999999954 4455555 343 3555555555543
No 143
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=91.29 E-value=0.14 Score=29.13 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=41.4
Q ss_pred EEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 28 FEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 28 f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
+.+...+++..|.+.. +++...+.+..||+.+..+ .-+.+||.|+++.--.||
T Consensus 25 ~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv~GG 77 (77)
T 1rws_A 25 IEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVVSGG 77 (77)
T ss_dssp CCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCCCCC
T ss_pred EECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcccccC
Confidence 3445567888877654 5677888999999999764 469999999999888877
No 144
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=91.11 E-value=1.4 Score=26.51 Aligned_cols=69 Identities=14% Similarity=0.050 Sum_probs=50.9
Q ss_pred CcEEEEEEec--CC-CEEEEEEeccchHHHHHHHHHh--h-hCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEee
Q 048514 12 HFINLVVKGQ--DN-DPLYFEFRRDWEIKKLLITYCE--K-KDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 12 ~~I~i~v~~~--~~-~~~~f~i~~~t~l~kL~~~y~~--~-~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~ 85 (89)
+.|.|.|... +. ..+.+.+...+++..+.++..- . -.++.+.+.+-.+|+.+. .+--+.|||.|+++.-
T Consensus 11 ~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyrp 85 (97)
T 2hj1_A 11 NQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYRP 85 (97)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECCC
T ss_pred ceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEec
Confidence 4577777653 22 2346788889999999988852 3 367777889999999887 3334999999999753
No 145
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=91.10 E-value=0.46 Score=28.62 Aligned_cols=65 Identities=8% Similarity=0.034 Sum_probs=43.1
Q ss_pred CCCCCCCcEEEEEEecCCCE----EEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECC-eecCCCCCcccc
Q 048514 6 DNIPDQHFINLVVKGQDNDP----LYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLING-NRFPHIRTPDQL 72 (89)
Q Consensus 6 ~~~~~~~~I~i~v~~~~~~~----~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG-~~l~~~~Tp~~l 72 (89)
+.++++.+|.|+++...+.. -.|.|..+.+++.+.....++..++ ++=++.+. -.-+.++|..+|
T Consensus 6 ~~~~~~~KV~V~~~~~~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~--alFlyvn~~~~Ps~d~~m~~L 75 (96)
T 1wz3_A 6 ESPNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD--SLFVYVNSAFSPNPDESVIDL 75 (96)
T ss_dssp ------CEEEEEEEECTTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS--SCEEEEEEEECCCTTSBHHHH
T ss_pred CCCCCCCeEEEEEEECCCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc--eEEEEECCcccCChhhHHHHH
Confidence 34456789999998643322 3799999999999999999999887 55454444 233446666655
No 146
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=91.10 E-value=1.3 Score=26.09 Aligned_cols=62 Identities=18% Similarity=0.084 Sum_probs=43.6
Q ss_pred CEEEEEEe--ccchHHHHHHHHHhhhCC-C--C------C----cEeEEECCeecC---CCCCccccCCCCCCEEEEEee
Q 048514 24 DPLYFEFR--RDWEIKKLLITYCEKKDA-Q--Y------G----TFPFLINGNRFP---HIRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 24 ~~~~f~i~--~~t~l~kL~~~y~~~~g~-~--~------~----~~rF~fdG~~l~---~~~Tp~~l~medgD~Idv~~~ 85 (89)
++..+.+. ..+++..|.+..++++.- . . . .+.+..||..+. +.+| -+.|||+|.++.-
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~d~----~L~dgDeVa~~Pp 95 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKDY----ILEDGDIISFTST 95 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTGGGC----BCCTTCEEEEEEC
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCCCCc----CcCCCCEEEEECC
Confidence 34556665 568999999998877631 1 1 2 245888998764 3444 4899999999888
Q ss_pred ecCC
Q 048514 86 AGGA 89 (89)
Q Consensus 86 q~GG 89 (89)
-.||
T Consensus 96 v~GG 99 (99)
T 2qjl_A 96 LHGG 99 (99)
T ss_dssp TTCC
T ss_pred CCCC
Confidence 7777
No 147
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=90.74 E-value=1.2 Score=27.01 Aligned_cols=75 Identities=20% Similarity=0.257 Sum_probs=47.2
Q ss_pred CCCCcEEEEEEecCCCEEEEEEecc-chHHHHHH-HHH--hhh-----------CCCC----Cc-EeEEECCeecCCCCC
Q 048514 9 PDQHFINLVVKGQDNDPLYFEFRRD-WEIKKLLI-TYC--EKK-----------DAQY----GT-FPFLINGNRFPHIRT 68 (89)
Q Consensus 9 ~~~~~I~i~v~~~~~~~~~f~i~~~-t~l~kL~~-~y~--~~~-----------g~~~----~~-~rF~fdG~~l~~~~T 68 (89)
+...+|+|.|...++....|.|.+. +.|..+++ ++. ... |+.. +. -.|.-+|+.++ .-
T Consensus 4 ~g~k~i~i~v~~~~~~~~~~~v~t~g~tL~dvLk~~~~ve~e~s~~G~fITsI~G~~ad~~~~~yW~~~vng~~~~--~G 81 (101)
T 3u7z_A 4 EGEKHITVTVIHGDQTENVFEFDTDAKYLGEVLESENLVDGESGEYGLFITTVDEETADDSKQQWWCITKGGEQVN--TS 81 (101)
T ss_dssp -CCEEEEEEEECTTSCEEEEEEEECCSBHHHHHHHTTCEEEECCTTSCEEEEETTEECCGGGTEEEEEEETTEECC--SC
T ss_pred cceeEEEEEEEcCCCceeEEEEcCCccHHHHHHHHcCccccccccccceEEEEcCEecCCCCCCEEEEEECCEEhh--hc
Confidence 3456899999998888888888733 23444443 221 010 1100 11 24556777776 47
Q ss_pred ccccCCCCCCEEEEEee
Q 048514 69 PDQLGLKDGDEIVATFY 85 (89)
Q Consensus 69 p~~l~medgD~Idv~~~ 85 (89)
+.++-++|||.|.+.+.
T Consensus 82 a~~~~v~dGD~i~~~~t 98 (101)
T 3u7z_A 82 ADQTPVSDGDAFELTLK 98 (101)
T ss_dssp GGGCBCCTTCEEEEEEE
T ss_pred hhheEecCCCEEEEEEe
Confidence 88999999999998764
No 148
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=89.70 E-value=2.9 Score=32.17 Aligned_cols=66 Identities=17% Similarity=0.124 Sum_probs=46.9
Q ss_pred CCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCC-CcEeEEE-C--C--eecCCCCCccccCCCCC
Q 048514 11 QHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQY-GTFPFLI-N--G--NRFPHIRTPDQLGLKDG 77 (89)
Q Consensus 11 ~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~-~~~rF~f-d--G--~~l~~~~Tp~~l~medg 77 (89)
+..|.++|.-.|| .+.|.|..+++-+.|++..|.+.|+.. .-+-|.| + | ..|..+.+..+.+...+
T Consensus 2 ~k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~ 73 (575)
T 2i1j_A 2 PKSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKE 73 (575)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCC
T ss_pred CceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCC
Confidence 3578899988888 678999999999999999999999953 4455555 2 2 24555555555443333
No 149
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=89.40 E-value=0.96 Score=31.65 Aligned_cols=51 Identities=16% Similarity=0.007 Sum_probs=39.4
Q ss_pred CCCCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCC-CcEeEEE
Q 048514 8 IPDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQY-GTFPFLI 58 (89)
Q Consensus 8 ~~~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~-~~~rF~f 58 (89)
.+....+.++|.-.||....|.|.++++-+.|++..|++.|+.. .-+-|.|
T Consensus 12 ~~~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~ 63 (296)
T 3qij_A 12 ENLYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAI 63 (296)
T ss_dssp -----CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEE
T ss_pred CCCCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEE
Confidence 34556788899889999999999999999999999999999954 3344444
No 150
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=89.14 E-value=2.2 Score=25.09 Aligned_cols=60 Identities=8% Similarity=0.080 Sum_probs=49.9
Q ss_pred EEEEEeccchHHHHHHHHHhhh-CC-----CCCcEeEEECC--eecCCCCCccccCCCCCCEEEEEee
Q 048514 26 LYFEFRRDWEIKKLLITYCEKK-DA-----QYGTFPFLING--NRFPHIRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 26 ~~f~i~~~t~l~kL~~~y~~~~-g~-----~~~~~rF~fdG--~~l~~~~Tp~~l~medgD~Idv~~~ 85 (89)
.-+-|...++|..+-++.|-+- |. +-..+|..++| +.+..+.|..+-||..-|+|||+.+
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 3577888999999998887532 32 23478999999 9999999999999999999999864
No 151
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=89.12 E-value=4.4 Score=28.92 Aligned_cols=48 Identities=10% Similarity=0.174 Sum_probs=41.2
Q ss_pred CCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCC-CCcEeEEE
Q 048514 11 QHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQ-YGTFPFLI 58 (89)
Q Consensus 11 ~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~-~~~~rF~f 58 (89)
...+.++|.-.||....|.|..+++-+.|++..|++.|+. ..-+-+.+
T Consensus 83 ~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~ 131 (371)
T 3ivf_A 83 KKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVR 131 (371)
T ss_dssp ECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEEC
T ss_pred CceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEE
Confidence 3568888998999999999999999999999999999995 45566655
No 152
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=88.86 E-value=1.8 Score=25.69 Aligned_cols=61 Identities=7% Similarity=-0.024 Sum_probs=42.8
Q ss_pred CCCcEEEEEEecCCCE----EEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCee-cCCCCCcccc
Q 048514 10 DQHFINLVVKGQDNDP----LYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNR-FPHIRTPDQL 72 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~----~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~-l~~~~Tp~~l 72 (89)
++.+|+|+++.....+ -.|.|..+.+++.+.....++.++ +++=++.+..- -+.++|..+|
T Consensus 5 ~~~Kv~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l--~alFlyVNn~f~Ps~d~~~~~L 70 (91)
T 3w1s_C 5 NIQKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM--DHVYCYINNSFAPSPQQNIGEL 70 (91)
T ss_dssp -CCEEEEEEEECCC-------EEEEETTSBHHHHHHHHHHHHTC--SCCEEEETTTBCCCTTSBHHHH
T ss_pred CCCeEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC--ceEEEEECCccCCCcccHHHHH
Confidence 5678999988633322 379999999999999999999998 56755556653 3345665543
No 153
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=88.55 E-value=2.5 Score=25.11 Aligned_cols=59 Identities=8% Similarity=0.009 Sum_probs=51.0
Q ss_pred EEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEee
Q 048514 27 YFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 27 ~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~ 85 (89)
.-.|.-..||..|.+-...+.|++.+...|+..+..|.++.+.-+-+.+-.-.+.+.++
T Consensus 6 ~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvq 64 (89)
T 2juo_A 6 SQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQ 64 (89)
T ss_dssp EEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEE
T ss_pred hhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEE
Confidence 34566678999999999999999999999999999999999999999988887766544
No 154
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=87.92 E-value=1.6 Score=25.74 Aligned_cols=56 Identities=29% Similarity=0.375 Sum_probs=39.2
Q ss_pred cchHHHHHHHHHhhhC-CCC---------CcE-------eEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 33 DWEIKKLLITYCEKKD-AQY---------GTF-------PFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 33 ~t~l~kL~~~y~~~~g-~~~---------~~~-------rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
..++..|.+..+.++. +.. ..+ .+..||+.+...+ -.+.-+.|||.|.++.--.||
T Consensus 27 ~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~~~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 27 GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-GLETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-STTSCCCTTEEEEEECCCSCC
T ss_pred CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-CCCCCCCCCCEEEEECCCCCC
Confidence 5899999999887642 111 124 7999999885322 223358999999999887777
No 155
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=87.60 E-value=5.9 Score=28.25 Aligned_cols=71 Identities=14% Similarity=0.104 Sum_probs=56.6
Q ss_pred cEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCC----CCCcEeEEE------CCeecCCCCCccccCCCCCCEEEE
Q 048514 13 FINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDA----QYGTFPFLI------NGNRFPHIRTPDQLGLKDGDEIVA 82 (89)
Q Consensus 13 ~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~----~~~~~rF~f------dG~~l~~~~Tp~~l~medgD~Idv 82 (89)
.+.|+|.-. +....+...++++...+....+++..- +.+..-+++ .|..|..+.|.+.+++.+|+.|+.
T Consensus 3 ~~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~ 81 (371)
T 3ivf_A 3 ALSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEY 81 (371)
T ss_dssp CEEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEE
T ss_pred cEEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeec
Confidence 355666544 555689999999999999888887753 577887777 478899999999999999999876
Q ss_pred Ee
Q 048514 83 TF 84 (89)
Q Consensus 83 ~~ 84 (89)
..
T Consensus 82 ~~ 83 (371)
T 3ivf_A 82 RK 83 (371)
T ss_dssp EE
T ss_pred cC
Confidence 53
No 156
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=85.13 E-value=4.2 Score=24.01 Aligned_cols=51 Identities=10% Similarity=-0.046 Sum_probs=40.1
Q ss_pred CCCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCe
Q 048514 9 PDQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGN 61 (89)
Q Consensus 9 ~~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~ 61 (89)
|.-..++||+-- ++.-+.++|..+.+|+.|.+..+++..++ +-+.|.|.++
T Consensus 8 pq~~~~KVK~yy-~DDIiAIrvP~di~~~~L~dKi~~RLk~~-~~~l~~ykde 58 (85)
T 1ip9_A 8 SGLKTTKIKFYY-KDDIFALMLKGDTTYKELRSKIAPRIDTD-NFKLQTKLFD 58 (85)
T ss_dssp CCCCCEEEEECB-TTCCEEEEECSCCCHHHHHHHHHHHHTSS-CEEEEECCSS
T ss_pred CccCceEEEEEe-cCcEEEEECCCCCCHHHHHHHHHHHhccc-ceEEEEecCC
Confidence 444678888864 56778999999999999999999999983 4445555655
No 157
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=83.82 E-value=4.8 Score=23.68 Aligned_cols=60 Identities=13% Similarity=0.100 Sum_probs=50.5
Q ss_pred EEEEEeccchHHHHHHHHHhhh-CC----CCCcEeEEECCee--cCCCCCccccCCCCCCEEEEEee
Q 048514 26 LYFEFRRDWEIKKLLITYCEKK-DA----QYGTFPFLINGNR--FPHIRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 26 ~~f~i~~~t~l~kL~~~y~~~~-g~----~~~~~rF~fdG~~--l~~~~Tp~~l~medgD~Idv~~~ 85 (89)
.-+-|...++|..+-++.|.+. |. .+..+|...+|.. +..+.|..+.|+..-|.||++.+
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~~ 83 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVFE 83 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEEC
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEEc
Confidence 4688899999999998888632 33 2358999999999 99999999999999999999863
No 158
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=83.27 E-value=2.9 Score=27.27 Aligned_cols=59 Identities=10% Similarity=0.084 Sum_probs=41.6
Q ss_pred EEeccchHHHHHHHHHhhhC-CC---------CCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 29 EFRRDWEIKKLLITYCEKKD-AQ---------YGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 29 ~i~~~t~l~kL~~~y~~~~g-~~---------~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
.+.. +++..|.+..+..+. +. ...+.+..||+.+...+- .+.-+.+||.|.++.--.||
T Consensus 19 ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGDeVai~PpVsGG 87 (168)
T 1v8c_A 19 ELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGATLDLFPPVAGG 87 (168)
T ss_dssp ECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTCEEEEECSCCSE
T ss_pred EECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCCEEEEECccccc
Confidence 4444 789999988876642 11 246789999999875321 22349999999998877776
No 159
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=82.98 E-value=3.5 Score=24.37 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=47.0
Q ss_pred CCcEEEEEEecCCC----EEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEE-CCeec-CCCCCcccc----CCCCCCEE
Q 048514 11 QHFINLVVKGQDND----PLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLI-NGNRF-PHIRTPDQL----GLKDGDEI 80 (89)
Q Consensus 11 ~~~I~i~v~~~~~~----~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~f-dG~~l-~~~~Tp~~l----~medgD~I 80 (89)
..+|+|+++..... .-.|.|..+.+++.++....++..++++.--|+| +..-+ +.++|..+| . +||-.+
T Consensus 3 ~~Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k-~DGfLy 81 (91)
T 4gdk_A 3 KKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG-SDGKLV 81 (91)
T ss_dssp -CEEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC-BTTEEE
T ss_pred CceEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC-CCCEEE
Confidence 35788888763322 2379999999999999999999999776544444 55433 345666543 4 555444
Q ss_pred E
Q 048514 81 V 81 (89)
Q Consensus 81 d 81 (89)
-
T Consensus 82 v 82 (91)
T 4gdk_A 82 L 82 (91)
T ss_dssp E
T ss_pred E
Confidence 3
No 160
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=82.41 E-value=4.6 Score=23.07 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=39.3
Q ss_pred EEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEee
Q 048514 15 NLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 15 ~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~ 85 (89)
.|.|...+|..+. +...++...+. |+-..++..+.+--.+||+.+..+ | -|++||+|+++..
T Consensus 7 ~i~v~tP~G~~~~--lp~GaT~~D~A--~~Ih~~lg~~~v~AkVNG~~v~L~-~----~L~~gd~VeIit~ 68 (78)
T 3hvz_A 7 EVFVFTPKGDVIS--LPIGSTVIDFA--YAIHSAVGNRMIGAKVDGRIVPID-Y----KVKTGEIIDVLTT 68 (78)
T ss_dssp EEEEECTTSCEEE--EETTCBHHHHH--HHHCHHHHHTEEEEEETTEEECTT-C----BCCTTCBEEEEEC
T ss_pred eEEEECCCCCEEE--ecCCCCHHHHH--HHhhhhhhcceEEEEECCEEcCCC-c----ccCCCCEEEEEcc
Confidence 3566678888754 44555555543 333333334556667799888764 3 4899999998764
No 161
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=82.35 E-value=3.3 Score=22.42 Aligned_cols=62 Identities=10% Similarity=0.026 Sum_probs=38.9
Q ss_pred EEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEee
Q 048514 15 NLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 15 ~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~ 85 (89)
.+.|...+|+. +.+...+++..|...+.... ....+--..||+.+..+ --+++||.|+++..
T Consensus 2 ~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l--~~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt~ 63 (73)
T 2kmm_A 2 EVMVFTPKGEI--KRLPQGATALDFAYSLHSDL--GDHCIGAKVNHKLVPLS-----YVLNSGDQVEVLSS 63 (73)
T ss_dssp CEEEECTTCCE--EEECTTCBHHHHHHHHCSHH--HHTEEEEEETTEECCTT-----CBCCSSSBEEEEEC
T ss_pred eEEEEcCCCCE--EEcCCCCcHHHHHHHHhhcc--ccceEEEEECCEEeCCC-----cCcCCCCEEEEEEC
Confidence 34555567776 45556777777776653221 23345557899877764 45668899988753
No 162
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=81.56 E-value=6.9 Score=23.85 Aligned_cols=74 Identities=18% Similarity=0.187 Sum_probs=47.9
Q ss_pred CcEEEEEEec------CC--CEEEEEEec---cchHHHHHHHHHhhh-CC----------CCCcEeEEECCeec---CCC
Q 048514 12 HFINLVVKGQ------DN--DPLYFEFRR---DWEIKKLLITYCEKK-DA----------QYGTFPFLINGNRF---PHI 66 (89)
Q Consensus 12 ~~I~i~v~~~------~~--~~~~f~i~~---~t~l~kL~~~y~~~~-g~----------~~~~~rF~fdG~~l---~~~ 66 (89)
..++|+|+-. .+ +.+.+.+.. ..+++.|++..++++ +. -...+.++.||+.+ ..-
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gl 89 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGEL 89 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTT
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeeccCCc
Confidence 3466666532 23 244566662 258999999998876 11 12236688888855 344
Q ss_pred CCccccCCCCCCEEEEEeeecCC
Q 048514 67 RTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q~GG 89 (89)
+|| ++|||.|.++...-||
T Consensus 90 dt~----L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 90 DYQ----LQDQDSILFISTLHGG 108 (114)
T ss_dssp TCB----CCSSEEEEEEECSCCC
T ss_pred CcC----CCCCCEEEEeCCCCCC
Confidence 554 8999999888776666
No 163
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=78.90 E-value=8.3 Score=30.12 Aligned_cols=48 Identities=17% Similarity=0.052 Sum_probs=41.2
Q ss_pred CCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCC-CCcEeEEE
Q 048514 11 QHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQ-YGTFPFLI 58 (89)
Q Consensus 11 ~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~-~~~~rF~f 58 (89)
...|.++|.-.||....|.|...++-+.|++..|++.|+. ..-+-+.+
T Consensus 261 ~~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 261 KKPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred CCceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 3578899998999999999999999999999999999994 45555555
No 164
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=78.39 E-value=3.9 Score=24.71 Aligned_cols=48 Identities=8% Similarity=0.127 Sum_probs=35.8
Q ss_pred CcEEEEEEecC-------CCEEEEEEeccchHHHHHHHHHhhhCCC-C----CcEeEEEC
Q 048514 12 HFINLVVKGQD-------NDPLYFEFRRDWEIKKLLITYCEKKDAQ-Y----GTFPFLIN 59 (89)
Q Consensus 12 ~~I~i~v~~~~-------~~~~~f~i~~~t~l~kL~~~y~~~~g~~-~----~~~rF~fd 59 (89)
..|++||...+ +..+.+.|.++..+..|.++..++.+++ . ..+++.|.
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYk 63 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQ 63 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEE
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEE
Confidence 34888888543 3457899999999999999999998864 1 23566663
No 165
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=75.73 E-value=13 Score=28.00 Aligned_cols=49 Identities=4% Similarity=-0.013 Sum_probs=41.7
Q ss_pred CCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCC--CcEeEEEC
Q 048514 11 QHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQY--GTFPFLIN 59 (89)
Q Consensus 11 ~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~--~~~rF~fd 59 (89)
...+.++|.-.||....|.|..+++-+.|++..|++.|+.. +-+-+.+.
T Consensus 214 ~~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~ 264 (555)
T 3au4_A 214 RQEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEY 264 (555)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEE
T ss_pred CCCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEE
Confidence 45688899889999999999999999999999999999963 45666553
No 166
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=72.42 E-value=14 Score=22.75 Aligned_cols=62 Identities=8% Similarity=0.115 Sum_probs=43.0
Q ss_pred CCcEEEEEEecCCC------EEEEEEeccchHHHHHHHHHhhhCCCCCc-EeEEECCeecCCCCCcccc
Q 048514 11 QHFINLVVKGQDND------PLYFEFRRDWEIKKLLITYCEKKDAQYGT-FPFLINGNRFPHIRTPDQL 72 (89)
Q Consensus 11 ~~~I~i~v~~~~~~------~~~f~i~~~t~l~kL~~~y~~~~g~~~~~-~rF~fdG~~l~~~~Tp~~l 72 (89)
+++|-|.|.-..+. .-.|.|..+.+++.++....++..++++. +=|+.++...+.+.|..+|
T Consensus 29 P~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~l 97 (119)
T 3h9d_A 29 PDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADI 97 (119)
T ss_dssp TTEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHH
T ss_pred CCeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHH
Confidence 45666666543322 23699999999999999999999997765 4445577755556665543
No 167
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Probab=72.26 E-value=3.9 Score=21.47 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=16.5
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.++.||+|.|....
T Consensus 15 ~~~~eLs~~~Gd~i~v~~~~ 34 (62)
T 2fpe_A 15 RHEDELELEVDDPLLVELQA 34 (62)
T ss_dssp SSTTBCCBCTTCEEEEEEEC
T ss_pred cCcCcCcCCCCCEEEEEEec
Confidence 56789999999999997543
No 168
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=71.95 E-value=1.7 Score=23.49 Aligned_cols=20 Identities=25% Similarity=0.011 Sum_probs=16.7
Q ss_pred CCCccccCCCCCCEEEEEee
Q 048514 66 IRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 66 ~~Tp~~l~medgD~Idv~~~ 85 (89)
...+.+|.++.||+|.|...
T Consensus 21 ~~~~~eLsf~~Gd~i~v~~~ 40 (70)
T 1gcq_C 21 GAFGPFLRLNPGDIVELTKA 40 (70)
T ss_dssp GGCSCBCCBCTTCEEEEEEC
T ss_pred CCCCCcCCcCCCCEEEEEeC
Confidence 34567999999999999876
No 169
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=70.82 E-value=4.3 Score=22.12 Aligned_cols=21 Identities=29% Similarity=0.359 Sum_probs=17.3
Q ss_pred CCCccccCCCCCCEEEEEeee
Q 048514 66 IRTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 66 ~~Tp~~l~medgD~Idv~~~q 86 (89)
...+.+|.+..||+|.|.-..
T Consensus 17 a~~~~ELs~~~Gd~i~v~~~~ 37 (65)
T 2lj0_A 17 PQNDDELELRDGDIVDVMEKC 37 (65)
T ss_dssp CSSTTBCCBCTTCEEEEEEEC
T ss_pred CCCcCCcCCCCCCEEEEeEeC
Confidence 357889999999999987654
No 170
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=69.92 E-value=17 Score=22.41 Aligned_cols=62 Identities=8% Similarity=0.100 Sum_probs=41.5
Q ss_pred CCcEEEEEEecCCC------EEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEE-CCeecCCCCCcccc
Q 048514 11 QHFINLVVKGQDND------PLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLI-NGNRFPHIRTPDQL 72 (89)
Q Consensus 11 ~~~I~i~v~~~~~~------~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~f-dG~~l~~~~Tp~~l 72 (89)
+++|-|.|.-..+. ...|.|..+.+++.++....++..++++.--|+| ++...+.+.|..+|
T Consensus 28 P~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~l 96 (118)
T 3rui_B 28 KNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAI 96 (118)
T ss_dssp SSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHH
T ss_pred CCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHH
Confidence 45666666543322 2379999999999999999999999776544555 66434445554443
No 171
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=69.41 E-value=4.6 Score=20.87 Aligned_cols=21 Identities=14% Similarity=0.355 Sum_probs=17.1
Q ss_pred CCccccCCCCCCEEEEEeeec
Q 048514 67 RTPDQLGLKDGDEIVATFYAG 87 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q~ 87 (89)
..+.+|.+..||+|.|.....
T Consensus 12 ~~~~eLs~~~Gd~i~v~~~~~ 32 (58)
T 1jo8_A 12 AEDNELTFVENDKIINIEFVD 32 (58)
T ss_dssp CSTTBCCBCTTCEEEEEECCS
T ss_pred CCCCCcccCCCCEEEEEEecC
Confidence 457799999999999987543
No 172
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A
Probab=69.28 E-value=5.5 Score=21.10 Aligned_cols=21 Identities=14% Similarity=0.234 Sum_probs=17.4
Q ss_pred CCccccCCCCCCEEEEEeeec
Q 048514 67 RTPDQLGLKDGDEIVATFYAG 87 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q~ 87 (89)
..+.+|.+..||+|.|.....
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~~ 38 (65)
T 2j05_A 18 PDTDEISFLKGDMFIVHNELE 38 (65)
T ss_dssp TTSSBCCBCTTCEEEEEEECT
T ss_pred CCCCcCcCCCCCEEEEeEecC
Confidence 568899999999999986543
No 173
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A
Probab=68.31 E-value=6.7 Score=20.06 Aligned_cols=21 Identities=38% Similarity=0.425 Sum_probs=17.4
Q ss_pred CCCccccCCCCCCEEEEEeee
Q 048514 66 IRTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 66 ~~Tp~~l~medgD~Idv~~~q 86 (89)
...+.+|.++.||+|.|....
T Consensus 12 ~~~~~eLs~~~Gd~i~v~~~~ 32 (58)
T 1zuy_A 12 SGSPSELPLKKGDVIYITREE 32 (58)
T ss_dssp CSCTTBCCBCTTCEEEEEEEC
T ss_pred CCCCCcCCCCCCCEEEEEEec
Confidence 347889999999999998664
No 174
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=67.45 E-value=11 Score=29.69 Aligned_cols=59 Identities=20% Similarity=0.245 Sum_probs=42.7
Q ss_pred EEEEEEeccchHHHHHHHHHhhhC--CCCCc--------EeEEECCe--------ecCCCCCccccCCCCCCEEEEE
Q 048514 25 PLYFEFRRDWEIKKLLITYCEKKD--AQYGT--------FPFLINGN--------RFPHIRTPDQLGLKDGDEIVAT 83 (89)
Q Consensus 25 ~~~f~i~~~t~l~kL~~~y~~~~g--~~~~~--------~rF~fdG~--------~l~~~~Tp~~l~medgD~Idv~ 83 (89)
...+.+..+.+|+.+.+.+|++.. +..-+ .+.+|+.. +-.-+.|..+|++.+|++|.|.
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 713 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp CEEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred eEEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 467888888899999999999754 43323 35566532 1234678999999999998874
No 175
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A
Probab=66.72 E-value=6.5 Score=20.25 Aligned_cols=21 Identities=29% Similarity=0.378 Sum_probs=17.3
Q ss_pred CCccccCCCCCCEEEEEeeec
Q 048514 67 RTPDQLGLKDGDEIVATFYAG 87 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q~ 87 (89)
..+.+|.+..||+|.|.....
T Consensus 14 ~~~~eLs~~~Gd~i~v~~~~~ 34 (58)
T 1zx6_A 14 QQDGDLGLKPGDKVQLLEKLS 34 (58)
T ss_dssp CSTTBCCBCTTCEEEEEEECS
T ss_pred CCCCCccCCCCCEEEEEEecC
Confidence 467899999999999986643
No 176
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=66.31 E-value=21 Score=22.32 Aligned_cols=62 Identities=11% Similarity=0.155 Sum_probs=45.5
Q ss_pred CCcEEEEEEecCCCE-------EEEEEeccchHHHHHHHHHhhhCCCCCcEeEE-ECCeecC-CCCCcccc
Q 048514 11 QHFINLVVKGQDNDP-------LYFEFRRDWEIKKLLITYCEKKDAQYGTFPFL-INGNRFP-HIRTPDQL 72 (89)
Q Consensus 11 ~~~I~i~v~~~~~~~-------~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~-fdG~~l~-~~~Tp~~l 72 (89)
+++|-|.|.-..+.. -.|.|..+.++..++....++.+++++.--|+ |-+..+. .++|..+|
T Consensus 33 P~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~l 103 (130)
T 2zjd_A 33 PTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEV 103 (130)
T ss_dssp TTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHH
T ss_pred CCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHH
Confidence 467777775333322 37999999999999999999999988777777 7655444 45666665
No 177
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=66.03 E-value=5.9 Score=20.43 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=17.2
Q ss_pred CCccccCCCCCCEEEEEeeec
Q 048514 67 RTPDQLGLKDGDEIVATFYAG 87 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q~ 87 (89)
..+.+|.+..||+|.|.....
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~~ 33 (58)
T 2bz8_A 13 QHDDELTISVGEIITNIRKED 33 (58)
T ss_dssp CSTTBCCBCTTCEEEEEECCT
T ss_pred CCcCEeeECCCCEEEEEEeCC
Confidence 467899999999999977543
No 178
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=65.28 E-value=21 Score=22.25 Aligned_cols=62 Identities=11% Similarity=0.104 Sum_probs=41.5
Q ss_pred CCcEEEEEEecCCC------EEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEE-CCeecCCCCCcccc
Q 048514 11 QHFINLVVKGQDND------PLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLI-NGNRFPHIRTPDQL 72 (89)
Q Consensus 11 ~~~I~i~v~~~~~~------~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~f-dG~~l~~~~Tp~~l 72 (89)
+++|-|.|.-..+. ...|.|..+.+++.++....++..++++.--|+| ++...+.+.|..+|
T Consensus 34 P~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~l 102 (125)
T 3m95_A 34 PDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSL 102 (125)
T ss_dssp TTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred CCeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHH
Confidence 34566666433322 2369999999999999999999999776655555 65433345555443
No 179
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Probab=64.89 E-value=7.1 Score=20.29 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=17.1
Q ss_pred CCccccCCCCCCEEEEEeeec
Q 048514 67 RTPDQLGLKDGDEIVATFYAG 87 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q~ 87 (89)
..+.+|.+..||+|.|.....
T Consensus 16 ~~~~eLs~~~Gd~i~v~~~~~ 36 (60)
T 1w70_A 16 NSKLELNFKAGDVIFLLSRIN 36 (60)
T ss_dssp SSTTBCCBCTTCEEEEEEECS
T ss_pred CCCCCccCCCCCEEEEEEeCC
Confidence 457789999999999987643
No 180
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A
Probab=64.86 E-value=6.5 Score=20.22 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=16.6
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~ 32 (58)
T 1uti_A 13 LEEDELGFRSGEVVEVLDSS 32 (58)
T ss_dssp CSTTBCCBCTTCEEEEEECC
T ss_pred CCcCCCCCCCCCEEEEEEEC
Confidence 45789999999999998654
No 181
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}
Probab=64.19 E-value=7 Score=21.07 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=16.4
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.++.||+|.|....
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~ 37 (71)
T 2fpf_A 18 RHEDELELEVDDPLLVELQA 37 (71)
T ss_dssp SSTTBCCBCTTCEEEEEEEC
T ss_pred cCCCcccCcCCcEEEEeEec
Confidence 45789999999999997543
No 182
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Probab=64.18 E-value=7.4 Score=20.76 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=16.8
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 19 ~~~~eLsf~~Gd~i~v~~~~ 38 (68)
T 1tg0_A 19 DYEDDLNFEKDQEIIVTSVE 38 (68)
T ss_dssp SCTTBCCBCTTCEEEEEEEC
T ss_pred CCcCCCCCCCCCEEEEEEec
Confidence 46789999999999998654
No 183
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=64.11 E-value=7.4 Score=20.10 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=17.0
Q ss_pred CCccccCCCCCCEEEEEeeec
Q 048514 67 RTPDQLGLKDGDEIVATFYAG 87 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q~ 87 (89)
..+.+|.+.-||+|.|.....
T Consensus 16 ~~~~eLs~~~Gd~i~v~~~~~ 36 (59)
T 2g6f_X 16 TNEDELSFSKGDVIHVTRVEE 36 (59)
T ss_dssp SSTTBCCBCTTCEEEEEEECT
T ss_pred CCcCCcCCCCCCEEEEEEecC
Confidence 457899999999999876543
No 184
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1
Probab=63.77 E-value=6.8 Score=20.51 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=16.9
Q ss_pred CCccccCCCCCCEEEEEeeec
Q 048514 67 RTPDQLGLKDGDEIVATFYAG 87 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q~ 87 (89)
..+.+|.+..||+|.|..+..
T Consensus 17 ~~~~eLs~~~Gd~i~v~~~~~ 37 (62)
T 1uj0_A 17 VEDNELTFKHGELITVLDDSD 37 (62)
T ss_dssp CSTTBCCBCTTCEEEEEECCS
T ss_pred CCcCCcCCCCCCEEEEEEeCC
Confidence 356789999999999987543
No 185
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=63.49 E-value=22 Score=21.46 Aligned_cols=60 Identities=12% Similarity=0.134 Sum_probs=44.1
Q ss_pred CCCCcEEEEEEecCCCEEEEEEe--ccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEE
Q 048514 9 PDQHFINLVVKGQDNDPLYFEFR--RDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVAT 83 (89)
Q Consensus 9 ~~~~~I~i~v~~~~~~~~~f~i~--~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~ 83 (89)
-+++.|.|+++.+++..+--.|. +.-.|..|.++..+..- ....|+=+++=|+||.|.|.
T Consensus 10 M~a~~lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP---------------~aT~TAFeYEDE~gDRITVR 71 (106)
T 2npt_A 10 MENQVLVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLP---------------EATTTAFEYEDEDGDRITVR 71 (106)
T ss_dssp C--CCEEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHST---------------TSCCSEEEEECTTSCEEEEC
T ss_pred cccCceEEEEECCCCCccccccCCcccccHHHHHHHHHHhCc---------------cceeeeeeeccccCCeeEEc
Confidence 36778899999999999888887 67788899988876542 13556667777888988875
No 186
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A
Probab=63.47 E-value=6.6 Score=21.51 Aligned_cols=20 Identities=35% Similarity=0.293 Sum_probs=17.0
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
+.+.+|.++.||+|.|....
T Consensus 23 ~~~~eLs~~~Gd~i~v~~~~ 42 (73)
T 2ebp_A 23 YDTDSLKLKKGDIIDIISKP 42 (73)
T ss_dssp TCCSBCCBCSSCEEEEEECC
T ss_pred CCCCccCCCCCCEEEEEEeC
Confidence 46789999999999998754
No 187
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A
Probab=63.32 E-value=6.8 Score=20.55 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=17.7
Q ss_pred CCccccCCCCCCEEEEEeeecC
Q 048514 67 RTPDQLGLKDGDEIVATFYAGG 88 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q~G 88 (89)
..+.+|.+..||+|.|..+.-+
T Consensus 33 ~~~~eLsf~~Gd~i~v~~~~~~ 54 (62)
T 1g2b_A 33 KSPREVTMKKGDILTLLNSTNK 54 (62)
T ss_dssp SSTTBCCBCTTCEEEEEECCSS
T ss_pred CCCCccCCCCCCEEEEEEecCC
Confidence 4577999999999999876443
No 188
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Probab=63.25 E-value=6.9 Score=20.96 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=16.7
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
+.+.+|.+.-||+|.|....
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~ 32 (65)
T 2nwm_A 13 QSPKELTLQKGDIVYIHKEV 32 (65)
T ss_dssp CSTTBCCBCTTCEEEEEECC
T ss_pred CCcCccCCcCCCEEEEEEec
Confidence 46789999999999997653
No 189
>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Probab=62.85 E-value=7.4 Score=19.92 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=16.7
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 14 ~~~~eLs~~~Gd~i~v~~~~ 33 (58)
T 2vwf_A 14 QEDGELGFRRGDFIHVMDNS 33 (58)
T ss_dssp CSTTBCCBCTTCEEEEEECC
T ss_pred CCcCCcCCCCCCEEEEEEcC
Confidence 46779999999999998654
No 190
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A
Probab=62.81 E-value=7.3 Score=20.26 Aligned_cols=20 Identities=15% Similarity=0.104 Sum_probs=16.7
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 15 ~~~~eLs~~~Gd~i~v~~~~ 34 (61)
T 1y0m_A 15 QREDELTFTKSAIIQNVEKQ 34 (61)
T ss_dssp CSTTBCCBCTTCEEEEEECC
T ss_pred CCCCCcCCcCCCEEEEEEec
Confidence 46779999999999997753
No 191
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1
Probab=62.76 E-value=7.3 Score=20.60 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=16.5
Q ss_pred CccccCCCCCCEEEEEeeec
Q 048514 68 TPDQLGLKDGDEIVATFYAG 87 (89)
Q Consensus 68 Tp~~l~medgD~Idv~~~q~ 87 (89)
++.+|.+..||+|.|.....
T Consensus 2 ~~~eLs~~~Gd~i~v~~~~~ 21 (63)
T 1tuc_A 2 GPREVTMKKGDILTLLNSTN 21 (63)
T ss_dssp CCCCCCBCTTCEEEEEECCS
T ss_pred CccccCCCCCCEEEEEEecC
Confidence 57899999999999976543
No 192
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=62.67 E-value=14 Score=23.03 Aligned_cols=55 Identities=15% Similarity=0.004 Sum_probs=44.9
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCC---------CcEeEEECCeecC
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQY---------GTFPFLINGNRFP 64 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~---------~~~rF~fdG~~l~ 64 (89)
+.+.|..+|-..|...+.++++.+..-+.|+.+-+++.+... --+...+.|+++-
T Consensus 6 ~~Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~v 69 (120)
T 2dhz_A 6 SGDEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVL 69 (120)
T ss_dssp SCCCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEE
T ss_pred CCCcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEee
Confidence 346788888888888888999999999999999999998743 2357788898875
No 193
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}
Probab=62.32 E-value=8.2 Score=19.77 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=16.3
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~ 32 (59)
T 1yn8_A 13 ENDNELRLAEGDIVFISYKH 32 (59)
T ss_dssp CSTTBCCBCTTCEEEEEEEE
T ss_pred CCCCCcCCCCCCEEEEEEcC
Confidence 46779999999999987653
No 194
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A
Probab=62.03 E-value=8.4 Score=20.13 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=16.4
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.+..||+|.|...
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~ 31 (62)
T 2j6f_A 13 VHDDELTIRVGEIIRNVKK 31 (62)
T ss_dssp SSTTBCCBCTTCEEEEEEE
T ss_pred CCcCCcCCcCCCEEEEEEe
Confidence 4677999999999999876
No 195
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=61.62 E-value=8.6 Score=20.04 Aligned_cols=21 Identities=24% Similarity=0.465 Sum_probs=17.1
Q ss_pred CCccccCCCCCCEEEEEeeec
Q 048514 67 RTPDQLGLKDGDEIVATFYAG 87 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q~ 87 (89)
..+.+|.+..||+|.|.....
T Consensus 17 ~~~~eLs~~~Gd~i~v~~~~~ 37 (62)
T 1k4u_S 17 TQPEDLEFQEGDIILVLSKVN 37 (62)
T ss_dssp CSSSBCCBCSSCEEEEEEESS
T ss_pred CCCCCccCCCCCEEEEEEeCC
Confidence 457799999999999987643
No 196
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}
Probab=61.53 E-value=8.3 Score=20.01 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=16.8
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~ 37 (60)
T 2gnc_A 18 RSARELSFKKGASLLLYHRA 37 (60)
T ss_dssp SSTTBCCBCTTCEEEEEEEE
T ss_pred CCcCCcCCCCCCEEEEEEec
Confidence 46779999999999998764
No 197
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A
Probab=61.52 E-value=7.7 Score=19.83 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=16.4
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.++.||+|.|....
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~ 32 (57)
T 1cka_A 13 NDEEDLPFKKGDILRIRDKP 32 (57)
T ss_dssp SSTTBCCBCTTCEEEEEECS
T ss_pred CCCCCCCCCCCCEEEEEEec
Confidence 35678999999999997654
No 198
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}
Probab=61.48 E-value=8.6 Score=20.74 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=17.2
Q ss_pred CCccccCCCCCCEEEEEeeec
Q 048514 67 RTPDQLGLKDGDEIVATFYAG 87 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q~ 87 (89)
..+.+|.+..||+|.|.....
T Consensus 15 ~~~~eLsf~~Gd~i~v~~~~~ 35 (68)
T 2ew3_A 15 ENQGELGFKEGDIITLTNQID 35 (68)
T ss_dssp CSTTBCCBCTTCEEEEEEESS
T ss_pred CCCCccCCCCCCEEEEEEecC
Confidence 467799999999999987643
No 199
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}
Probab=61.17 E-value=9 Score=19.83 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=16.7
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 17 ~~~~eLs~~~Gd~i~v~~~~ 36 (60)
T 2xmf_A 17 QDTDELSFNANDIIDIIKED 36 (60)
T ss_dssp SSTTBCCBCTTCEEEEEEEC
T ss_pred CCcCCcCCCCCCEEEEEEec
Confidence 45689999999999998754
No 200
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A
Probab=60.56 E-value=8.2 Score=19.75 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=16.6
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 14 ~~~~eLs~~~Gd~i~v~~~~ 33 (58)
T 1sem_A 14 QESGELAFKRGDVITLINKD 33 (58)
T ss_dssp SSTTBCCBCTTCEEEEEECS
T ss_pred CCCCCcCCCCCCEEEEEEec
Confidence 45779999999999997654
No 201
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A
Probab=60.46 E-value=25 Score=24.38 Aligned_cols=70 Identities=14% Similarity=-0.001 Sum_probs=45.2
Q ss_pred CcEEEEEEecCCCEEEEEEecc-----------------------------chHHHHHHHHHhhhCC------CC-----
Q 048514 12 HFINLVVKGQDNDPLYFEFRRD-----------------------------WEIKKLLITYCEKKDA------QY----- 51 (89)
Q Consensus 12 ~~I~i~v~~~~~~~~~f~i~~~-----------------------------t~l~kL~~~y~~~~g~------~~----- 51 (89)
....|.|+. ++...||+|.+. ..|..|.+.|....-. +.
T Consensus 45 g~y~LSv~~-~~~v~H~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~L~~P~~~~~~ 123 (304)
T 2eyz_A 45 GDYVLSVSE-NSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRSRQ 123 (304)
T ss_dssp SCCEEEECS-SSSCEEEECCCCSSCCSSCCCCCCCSSSSSCCCCCBTTBCCSCHHHHHTTTTTSCCSSSSSCCBCCSCSC
T ss_pred CCEEEEEEE-CCEEEEEEEeeccccccccccccccccccCCCeEEeCCcEECCHHHHHHHhhhCccccceeccccccccc
Confidence 446777764 567789999872 5788999999865310 10
Q ss_pred -----------CcEeEEECCeecCCCCCccccCCCCCCEEEEEeee
Q 048514 52 -----------GTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 52 -----------~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q 86 (89)
..++-+||= ....+.+|.+..||+|.|....
T Consensus 124 ~~g~~~~~~~~~~~~alydy----~~~~~~eLsf~~Gd~i~v~~~~ 165 (304)
T 2eyz_A 124 GSGVILRQEEAEYVRALFDF----NGNDEEDLPFKKGDILRIRDKP 165 (304)
T ss_dssp CSCCCCCCCCCCEEEECSCC----CCSCSSSCCCCTTCEEEEEECC
T ss_pred cccccCCcccceeEEEEeee----cCCCCCcCcccCCCEEEEEEec
Confidence 012222321 2345778999999999998754
No 202
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}
Probab=60.15 E-value=8.6 Score=19.76 Aligned_cols=20 Identities=45% Similarity=0.612 Sum_probs=16.5
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 15 ~~~~eLs~~~Gd~i~v~~~~ 34 (58)
T 1zlm_A 15 RTPDELYFEEGDIIYITDMS 34 (58)
T ss_dssp SSTTBCCBCTTCEEEEEECC
T ss_pred CCCCCccCCCCCEEEEEEeC
Confidence 45779999999999997653
No 203
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A
Probab=59.90 E-value=9.6 Score=20.17 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=16.9
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|..+.
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~ 37 (67)
T 2o9s_A 18 DTQVEMSFRKGERITLLRQV 37 (67)
T ss_dssp SSTTBCCBCTTCEEEEEEEC
T ss_pred CCcCccCCCCCCEEEEEEec
Confidence 46789999999999998653
No 204
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A
Probab=59.89 E-value=9.4 Score=20.31 Aligned_cols=20 Identities=25% Similarity=0.175 Sum_probs=16.6
Q ss_pred CccccCCCCCCEEEEEeeec
Q 048514 68 TPDQLGLKDGDEIVATFYAG 87 (89)
Q Consensus 68 Tp~~l~medgD~Idv~~~q~ 87 (89)
.+.+|.+..||+|.|.....
T Consensus 16 ~~~eLsf~~Gd~i~v~~~~~ 35 (67)
T 2bzy_A 16 DKTALALEVGDIVKVTRMNI 35 (67)
T ss_dssp CTTBCCBCTTCEEEEEEECS
T ss_pred CCCccccCCCCEEEEEEecC
Confidence 57799999999999876543
No 205
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=59.52 E-value=4.9 Score=22.70 Aligned_cols=22 Identities=14% Similarity=0.273 Sum_probs=17.0
Q ss_pred CccccCCCCCCEEEEEeeecCC
Q 048514 68 TPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 68 Tp~~l~medgD~Idv~~~q~GG 89 (89)
-.+.||++.||+.++.++..+|
T Consensus 33 I~kaLgIk~gD~fel~ve~kdg 54 (68)
T 3o27_A 33 IAEALDIKPDDTFILNMEQKDG 54 (68)
T ss_dssp HHHHTTCCTTCCEEEEEEEETT
T ss_pred HHHHhCCCCCCEEEEEEecCCC
Confidence 3567888899988888876655
No 206
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=59.24 E-value=25 Score=20.68 Aligned_cols=66 Identities=14% Similarity=0.119 Sum_probs=46.5
Q ss_pred EEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEE--ECC--eecCCCCCccccCCCCCCEEEEE
Q 048514 15 NLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFL--ING--NRFPHIRTPDQLGLKDGDEIVAT 83 (89)
Q Consensus 15 ~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~--fdG--~~l~~~~Tp~~l~medgD~Idv~ 83 (89)
.|++.-++++.-.+.|++..++..-..+-.++.++.++.+..+ -+| .+|.=+..... | .|++|.|-
T Consensus 9 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~~~~~~~~IdWdtDi~~--L-~~eEL~Ve 78 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYRLIKGRKTVTAWDTAIAP--L-DGEELIVE 78 (86)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEEEESSSCEEEECSSSBSTT--C-SSCEEEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEEEcCCCCccccchhHhhhh--c-cCcEEEEE
Confidence 4555558888889999999999999999999999988877555 246 44443333333 2 36666654
No 207
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A
Probab=59.21 E-value=11 Score=19.19 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=16.6
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~ 32 (58)
T 4e6r_A 13 EREDELSLVXGSRVTVMEXC 32 (58)
T ss_dssp CSTTBCCBCTTCEEEEEEEC
T ss_pred CCCCEeeEeCCCEEEEeEcC
Confidence 45788999999999997654
No 208
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Probab=58.98 E-value=12 Score=19.89 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=17.9
Q ss_pred CCCccccCCCCCCEEEEEeeec
Q 048514 66 IRTPDQLGLKDGDEIVATFYAG 87 (89)
Q Consensus 66 ~~Tp~~l~medgD~Idv~~~q~ 87 (89)
...+.+|.+..||+|.|.....
T Consensus 14 ~~~~~eLs~~~Gd~i~v~~~~~ 35 (69)
T 1ruw_A 14 SGSSSELPLKKGDIVFISRDEP 35 (69)
T ss_dssp CSCTTBCCBCTTCEEEEEEECT
T ss_pred CCCCCcccCCCCCEEEEEEecC
Confidence 3478899999999999987643
No 209
>1wfy_A Regulator of G-protein signaling 14; RAP1/RAP2 interacting protein; regulators of G-protein signaling, RAS family, structural genomics; NMR {Mus musculus} SCOP: d.15.1.5
Probab=58.82 E-value=9.9 Score=23.18 Aligned_cols=52 Identities=8% Similarity=0.022 Sum_probs=42.9
Q ss_pred CcEEEEEEe-cCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeec
Q 048514 12 HFINLVVKG-QDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRF 63 (89)
Q Consensus 12 ~~I~i~v~~-~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l 63 (89)
..+.+++.- ..++.+.++-+++-++..++.-.-.++|+...++.....|+..
T Consensus 15 ~Rv~F~L~l~p~~ksI~IksKptK~l~evLrPIL~KY~l~l~qv~v~~~g~~~ 67 (104)
T 1wfy_A 15 NRITFQLELVGLERVVRISAKPTKRLQEALQPILAKHGLSLDQVVLHRPGEKQ 67 (104)
T ss_dssp SCEEEEEEESSSSSEEEEEECSSSBTTTTTHHHHTTTTCCTTTCCBCCTTCSS
T ss_pred eeEEEEEeccCCCcEEEEEecCCCcHHHHHHHHHHHcCCChhhEEEEecCCcc
Confidence 467788865 7899999999999999999999999999988887776655443
No 210
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=58.81 E-value=27 Score=20.92 Aligned_cols=42 Identities=10% Similarity=-0.039 Sum_probs=37.3
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCC
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQY 51 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~ 51 (89)
...++.|+|-..||....+.|..+.+-+.+.+..+++.++..
T Consensus 6 ~~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~ 47 (100)
T 1wgr_A 6 SGRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALS 47 (100)
T ss_dssp CCSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCC
T ss_pred cCCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCC
Confidence 446788999889999999999999999999999999998753
No 211
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.73 E-value=10 Score=20.20 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=16.8
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|..+.
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (68)
T 2dl4_A 19 QENEDLEMRPGDIITLLEDS 38 (68)
T ss_dssp SSTTBCCCCTTCEEEEEECC
T ss_pred CCcCCcCCCCCCEEEEEEeC
Confidence 46789999999999998754
No 212
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=58.67 E-value=12 Score=20.56 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=17.0
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.++.||+|.|....
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (80)
T 1ue9_A 19 SGSEQLSLAPGQLILILKKN 38 (80)
T ss_dssp CSTTBCCCCTTCEEEEEEEC
T ss_pred CCCCCCCCCCCCEEEEEEec
Confidence 46889999999999998753
No 213
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Probab=58.64 E-value=10 Score=20.53 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=17.3
Q ss_pred CCccccCCCCCCEEEEEeeec
Q 048514 67 RTPDQLGLKDGDEIVATFYAG 87 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q~ 87 (89)
..+.+|.++.||+|.|..+..
T Consensus 25 ~~~~eLs~~~Gd~i~v~~~~~ 45 (73)
T 3c0c_A 25 ENDGELGFREGDLITLTNQID 45 (73)
T ss_dssp SSTTBCCBCTTCEEEEEEECS
T ss_pred CCCCCccCcCCCEEEEEEecC
Confidence 467799999999999987643
No 214
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}
Probab=58.43 E-value=8.6 Score=20.52 Aligned_cols=20 Identities=20% Similarity=0.150 Sum_probs=16.5
Q ss_pred CccccCCCCCCEEEEEeeec
Q 048514 68 TPDQLGLKDGDEIVATFYAG 87 (89)
Q Consensus 68 Tp~~l~medgD~Idv~~~q~ 87 (89)
.+.+|.+..||+|.|.....
T Consensus 21 ~~~eLs~~~Gd~i~v~~~~~ 40 (67)
T 2eyx_A 21 DKTALALEVGELVKVTKINV 40 (67)
T ss_dssp CSSBCCBCSSEEEEEEEECT
T ss_pred CCCccccCCCCEEEEEEecC
Confidence 56799999999999976543
No 215
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Probab=58.23 E-value=9.4 Score=19.89 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=16.8
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~ 32 (65)
T 2oaw_A 13 KSPREVTMKKGDILTLLNST 32 (65)
T ss_dssp SSTTBCCBCTTCEEEEEECC
T ss_pred cCCCCCCCCCCCEEEEEEcC
Confidence 46789999999999998754
No 216
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}
Probab=58.17 E-value=5.6 Score=21.39 Aligned_cols=19 Identities=37% Similarity=0.321 Sum_probs=16.0
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
+.+.+|.+..||+|.|..+
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~ 31 (65)
T 2fei_A 13 QNEDELELKVGDIIDINEE 31 (65)
T ss_dssp CSTTBCCCCTTCEEECCCC
T ss_pred CCcCccCCCCCCEEEEEEe
Confidence 4678999999999998754
No 217
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}
Probab=57.63 E-value=11 Score=19.94 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=16.1
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.+..||+|.|...
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~ 37 (68)
T 2djq_A 19 KNPGDLKFNKGDVILLRRQ 37 (68)
T ss_dssp CCTTCCCCCTTCEEEEEEC
T ss_pred CCcCCccCCCCCEEEEEEe
Confidence 4678999999999998754
No 218
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine kinase, signal transduction; NMR {Homo sapiens} PDB: 1wa7_A
Probab=57.49 E-value=11 Score=19.77 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=16.6
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+.-||+|.|....
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (65)
T 1w1f_A 19 IHPDDLSFKKGEKMKVLEEH 38 (65)
T ss_dssp CSSSCCCBCTTCEEEEEEEC
T ss_pred cCCCcCCCCCCCEEEEEEcC
Confidence 46779999999999997654
No 219
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A
Probab=57.49 E-value=9.8 Score=20.16 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=16.5
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (68)
T 2dl3_A 19 QTLKELPLQKGDIVYIYKQI 38 (68)
T ss_dssp SSTTBCCBCTTCEEEEEECC
T ss_pred CCcCCccCCCCCEEEEeEec
Confidence 46779999999999997653
No 220
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}
Probab=57.44 E-value=11 Score=20.52 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=16.5
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|..+.
T Consensus 17 ~~~~eLs~~~Gd~i~v~~~~ 36 (73)
T 2lcs_A 17 ENDNELRLAEGDIVFISYKH 36 (73)
T ss_dssp SSTTBCCBCTTCEEEEEEEE
T ss_pred CCCCccCCcCCCEEEEEEEc
Confidence 46789999999999987654
No 221
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A
Probab=57.18 E-value=10 Score=19.32 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=16.4
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 15 ~~~~eLs~~~Gd~i~v~~~~ 34 (58)
T 2drm_A 15 QTGDELTFKEGDTIIVHQKD 34 (58)
T ss_dssp CSTTBCCBCTTCEEEEEECC
T ss_pred CCcCCcCCCCCCEEEEEEec
Confidence 45788999999999987653
No 222
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=56.97 E-value=9.1 Score=19.43 Aligned_cols=30 Identities=10% Similarity=0.101 Sum_probs=24.1
Q ss_pred CEEEEEEeccchHHHHHHHHHhhhCCCCCc
Q 048514 24 DPLYFEFRRDWEIKKLLITYCEKKDAQYGT 53 (89)
Q Consensus 24 ~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~ 53 (89)
....+.|+-+..+..-++.||+..|++.+.
T Consensus 8 ~~~~i~vrl~~el~~~l~~~a~~~g~s~s~ 37 (55)
T 2k9i_A 8 NGIKLGVYIPQEWHDRLMEIAKEKNLTLSD 37 (55)
T ss_dssp CCEEEEEEECHHHHHHHHHHHHHHTCCHHH
T ss_pred ccceEEEEcCHHHHHHHHHHHHHhCCCHHH
Confidence 345677777889999999999999987643
No 223
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Probab=56.85 E-value=11 Score=20.01 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=16.9
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.++.||+|.|....
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (70)
T 2cuc_A 19 HRPEELDLQKGEGIRVLGKY 38 (70)
T ss_dssp CSTTBCCBCTTCEEEEEEEE
T ss_pred CCCCcCCCCCCCEEEEEEec
Confidence 46789999999999998654
No 224
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.74 E-value=11 Score=20.16 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=16.6
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.++.||+|.|....
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (68)
T 2dmo_A 19 ETKEELQVMPGNIVFVLKKG 38 (68)
T ss_dssp CSSSSCCCCTTCEEEECEEC
T ss_pred CCcCCCCCCCCCEEEEEEeC
Confidence 46779999999999997653
No 225
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=56.62 E-value=30 Score=20.78 Aligned_cols=62 Identities=13% Similarity=0.132 Sum_probs=43.1
Q ss_pred CCcEEEEEEecCCC------EEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEE-CCeecCCCCCcccc
Q 048514 11 QHFINLVVKGQDND------PLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLI-NGNRFPHIRTPDQL 72 (89)
Q Consensus 11 ~~~I~i~v~~~~~~------~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~f-dG~~l~~~~Tp~~l 72 (89)
+++|-|.|.-..+. .-.|.|..+.+++.++....++.+++++.--|+| ++.....+.|..+|
T Consensus 25 p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 25 PDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQL 93 (110)
T ss_dssp TTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred CCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHH
Confidence 46777877654322 2369999999999999999999999765544555 55544445566555
No 226
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=56.57 E-value=28 Score=20.47 Aligned_cols=44 Identities=14% Similarity=-0.001 Sum_probs=35.8
Q ss_pred CcEEEEEEecCCCEEEEEEec--cchHHHHHHHHHhhhCCCCCcEeEEE
Q 048514 12 HFINLVVKGQDNDPLYFEFRR--DWEIKKLLITYCEKKDAQYGTFPFLI 58 (89)
Q Consensus 12 ~~I~i~v~~~~~~~~~f~i~~--~t~l~kL~~~y~~~~g~~~~~~rF~f 58 (89)
..+.|+|. ..|....|.|.- ++++..|....+..+|++ ++++.|
T Consensus 5 ~~v~lkV~-f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~--~~~ikY 50 (87)
T 2bkf_A 5 PQVTLNVT-FKNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKY 50 (87)
T ss_dssp CCEEEEEE-ETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS--SEEEEE
T ss_pred ceEEEEEE-EcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC--ceEEEE
Confidence 56788886 478888888855 999999999999999986 566666
No 227
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.48 E-value=11 Score=21.20 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=16.4
Q ss_pred CccccCCCCCCEEEEEeee
Q 048514 68 TPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 68 Tp~~l~medgD~Idv~~~q 86 (89)
.+.+|.++.||+|.|....
T Consensus 31 ~~~eLsf~~Gd~i~v~~~~ 49 (88)
T 2dbk_A 31 DKTALALEVGDIVKVTRMN 49 (88)
T ss_dssp CSSBCCBCTTCEEEEEEEC
T ss_pred CCCcccCCCCCEEEEEEec
Confidence 6889999999999997654
No 228
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Probab=56.30 E-value=11 Score=19.74 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=16.4
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~ 37 (64)
T 2ak5_A 18 TNEDELSFSKGDVIHVTRVE 37 (64)
T ss_dssp CSTTBCCBCTTCEEEEEECC
T ss_pred cCcCcccCCCCCEEEEeEec
Confidence 35789999999999997653
No 229
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.08 E-value=12 Score=19.80 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=16.7
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (68)
T 1x2p_A 19 TDETQLSFLRGEKILILRQT 38 (68)
T ss_dssp SSTTBCCCCTTCEEEEEECC
T ss_pred CCcCCcCCCCCCEEEEEEcC
Confidence 46789999999999997653
No 230
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.90 E-value=12 Score=19.88 Aligned_cols=20 Identities=45% Similarity=0.612 Sum_probs=16.4
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (68)
T 1x2k_A 19 RTPDELYFEEGDIIYITDMS 38 (68)
T ss_dssp CSTTBCCCCSSCEEEEEECS
T ss_pred CCCCcccCCCCCEEEEEEcC
Confidence 35679999999999998653
No 231
>2oyn_A Hypothetical protein MJ0056; structural genomics, unknown function, PSI-2, protein structure initiative; HET: CDP; 1.85A {Methanocaldococcus jannaschii DSM2661} SCOP: b.43.5.2 PDB: 2p3m_A 2vbs_A 2vbt_A* 2vbu_A* 2vbv_A*
Probab=55.29 E-value=6 Score=25.51 Aligned_cols=16 Identities=44% Similarity=0.542 Sum_probs=13.9
Q ss_pred ccCCCCCCEEEEEeee
Q 048514 71 QLGLKDGDEIVATFYA 86 (89)
Q Consensus 71 ~l~medgD~Idv~~~q 86 (89)
.|+++|||.|.+.+..
T Consensus 119 ~L~LkDGD~V~I~v~~ 134 (146)
T 2oyn_A 119 QFNLKDGDVIKILIKG 134 (146)
T ss_dssp HHTCCTTCEEEEEEEC
T ss_pred hcCCCCCCEEEEEEeC
Confidence 7999999999987754
No 232
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.24 E-value=12 Score=20.20 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=16.9
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 21 ~~~~eLs~~~Gd~i~v~~~~ 40 (72)
T 2dl8_A 21 RTARELSFKKGASLLLYQRA 40 (72)
T ss_dssp SSSSBCCBCTTCEEEEEEEE
T ss_pred CCCCEeccCCCCEEEEEeec
Confidence 46789999999999998764
No 233
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}
Probab=55.21 E-value=9.5 Score=21.14 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=17.4
Q ss_pred CCccccCCCCCCEEEEEeeec
Q 048514 67 RTPDQLGLKDGDEIVATFYAG 87 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q~ 87 (89)
..+.+|.+..||+|.|.....
T Consensus 22 ~~~~eLsf~~Gd~i~v~~~~~ 42 (80)
T 2i0n_A 22 SDTSLLPFKRNDIITITFKDQ 42 (80)
T ss_dssp CSSSSCCBCSSEEEEEEEESS
T ss_pred CCCCCcCCCCCCEEEEEEecC
Confidence 467889999999999987643
No 234
>1v1c_A Obscurin; muscle, sarcomere, adapter, myogenesis, SH3-domain; NMR {Homo sapiens}
Probab=55.21 E-value=14 Score=20.93 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=17.6
Q ss_pred CCCccccCCCCCCEEEEEeeec
Q 048514 66 IRTPDQLGLKDGDEIVATFYAG 87 (89)
Q Consensus 66 ~~Tp~~l~medgD~Idv~~~q~ 87 (89)
...++++.|+.||+|+|...--
T Consensus 18 ~~~~~ei~lk~Gd~VeVl~k~~ 39 (71)
T 1v1c_A 18 GAEQDAITLREGQYVEVLDAAH 39 (71)
T ss_dssp SCCTTBCCBCTTCEEEEEEEEE
T ss_pred CCCcceeeecCCCEEEEEEcCC
Confidence 4466799999999999987643
No 235
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=54.86 E-value=8.9 Score=19.94 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=16.3
Q ss_pred cCCCCCccccCCCCCCEEEEEee
Q 048514 63 FPHIRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 63 l~~~~Tp~~l~medgD~Idv~~~ 85 (89)
.-+..--+.||++.||.+++..+
T Consensus 15 ~IPk~ir~~lgi~~Gd~v~i~~~ 37 (53)
T 2l66_A 15 TIPAKVRQKFQIKEGDLVKVTFD 37 (53)
T ss_dssp CCCHHHHHHSCCCTTCEEEEEEC
T ss_pred EeCHHHHHHcCcCCCCEEEEEEE
Confidence 33344446789999999988764
No 236
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=54.76 E-value=32 Score=20.57 Aligned_cols=66 Identities=11% Similarity=-0.010 Sum_probs=47.9
Q ss_pred EEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEE--ECC--eecCCCCCccccCCCCCCEEEEE
Q 048514 15 NLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFL--ING--NRFPHIRTPDQLGLKDGDEIVAT 83 (89)
Q Consensus 15 ~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~--fdG--~~l~~~~Tp~~l~medgD~Idv~ 83 (89)
.|++.-.+++.-.+.|++..++..-..+-.++.|+.++.+..+ -+| .+|+=+....+|. |++|.|-
T Consensus 19 ~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L~pe~C~Vy~~~~~~~~~IdWdtDi~~L~---~eEL~Ve 88 (95)
T 2l05_A 19 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRIQDGEKKPIGWDTDISWLT---GEELHVE 88 (95)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTCCGGGEEEEEEETTEEEEECTTSBGGGGT---TCEEEEE
T ss_pred EEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHcEEEEcCCCCccccchhHhhhhcc---CcEEEEE
Confidence 5556558888889999999999999999999999988877555 356 5555344444433 6666554
No 237
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.61 E-value=11 Score=20.79 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=16.3
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.++.||+|.|...
T Consensus 29 ~~~~eLs~~~Gd~i~v~~~ 47 (79)
T 1x6b_A 29 KQADEVTLQQADVVLVLQQ 47 (79)
T ss_dssp CSSSBCCCCTTEEEEEEEE
T ss_pred CCcCCcCCCCCCEEEEEEe
Confidence 4678999999999999765
No 238
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=54.35 E-value=33 Score=20.70 Aligned_cols=52 Identities=12% Similarity=0.016 Sum_probs=39.2
Q ss_pred CCcEEEEEEecCCCEEEEEEec--cchHHHHHHHHHhhhCCCCCcEeEEE---CCeecCC
Q 048514 11 QHFINLVVKGQDNDPLYFEFRR--DWEIKKLLITYCEKKDAQYGTFPFLI---NGNRFPH 65 (89)
Q Consensus 11 ~~~I~i~v~~~~~~~~~f~i~~--~t~l~kL~~~y~~~~g~~~~~~rF~f---dG~~l~~ 65 (89)
...++|+|. ..|+...|.|.- ++++..|....+..++++ .+++.| ||..|+-
T Consensus 12 ~~~v~lkV~-f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~--~~~IkY~DEenD~V~i 68 (101)
T 1wj6_A 12 EPQVTLNVT-FKNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLDEENEEVSI 68 (101)
T ss_dssp CSCEEEEEE-ETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS--SBCCEEECTTSCEECC
T ss_pred CccEEEEEE-EcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC--ceEEEEecCCCCEEEE
Confidence 356888886 478888888855 999999999999999986 445555 3555553
No 239
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=54.17 E-value=8.9 Score=20.73 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=21.0
Q ss_pred CCeecCCCCCccccCCCCCCEEEEEee
Q 048514 59 NGNRFPHIRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 59 dG~~l~~~~Tp~~l~medgD~Idv~~~ 85 (89)
.|+-.-+.+--+.||++.||.+++..+
T Consensus 21 kGqItIPkeiR~~Lgi~~Gd~l~i~~~ 47 (59)
T 1yfb_A 21 LGRVVIPIELRRTLGIAEKDALEIYVD 47 (59)
T ss_dssp TCEEECCHHHHHHTTCCTTCEEEEEEE
T ss_pred CCEEEeCHHHHHHcCCCCCCEEEEEEE
Confidence 455566666667899999999998775
No 240
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.48 E-value=13 Score=20.35 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=17.1
Q ss_pred CCccccCCCCCCEEEEEeeec
Q 048514 67 RTPDQLGLKDGDEIVATFYAG 87 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q~ 87 (89)
..+.+|.+..||+|.|.....
T Consensus 29 ~~~~eLsf~~Gd~i~v~~~~~ 49 (78)
T 2ed0_A 29 DKEDELSFQEGAIIYVIKKND 49 (78)
T ss_dssp SSTTBCCBCSSCEEEEEEECS
T ss_pred cCcCcccccCCCEEEEEEeCC
Confidence 457799999999999987643
No 241
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=53.47 E-value=12 Score=20.46 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=16.5
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (78)
T 2yuo_A 19 HDDDELGFRKNDIITIISQK 38 (78)
T ss_dssp SSTTBCCBCTTCEEEEEECC
T ss_pred CCCCCccCCCCCEEEEEEec
Confidence 35779999999999998654
No 242
>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A
Probab=53.33 E-value=14 Score=19.17 Aligned_cols=20 Identities=35% Similarity=0.307 Sum_probs=16.6
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (65)
T 3u23_A 19 QNEDELELKVGDIIDINEEV 38 (65)
T ss_dssp SSTTBCCBCTTCEEEEEEEE
T ss_pred CCcCCcCCCCCCEEEEEEec
Confidence 45788999999999987653
No 243
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=53.28 E-value=35 Score=20.62 Aligned_cols=74 Identities=11% Similarity=-0.010 Sum_probs=52.5
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCc---EeEEECCeecC--CCCCccccCCCCCCEEEEE
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGT---FPFLINGNRFP--HIRTPDQLGLKDGDEIVAT 83 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~---~rF~fdG~~l~--~~~Tp~~l~medgD~Idv~ 83 (89)
..+.|..+|-..|...+.++++.+..-+.|+.+-+++.+...+. +...+.|+++- +++..-.-.|.-+--|-|.
T Consensus 6 ~sD~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc 84 (104)
T 1wgy_A 6 SGEEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVY 84 (104)
T ss_dssp CSSCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEE
T ss_pred CCCceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEe
Confidence 44567788877888888999999999999999999999875433 46678898875 4444333333334444443
No 244
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}
Probab=53.14 E-value=12 Score=20.26 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=16.8
Q ss_pred CccccCCCCCCEEEEEeeec
Q 048514 68 TPDQLGLKDGDEIVATFYAG 87 (89)
Q Consensus 68 Tp~~l~medgD~Idv~~~q~ 87 (89)
.+.+|.+..||+|.|..+..
T Consensus 12 ~~~eLs~~~Gd~i~v~~~~~ 31 (73)
T 2kxd_A 12 GGREVTMKKGDILTLLNSTN 31 (73)
T ss_dssp CSCCCCBCTTCEEEEEECCS
T ss_pred CCCEeeEcCCCEEEEEEecC
Confidence 68899999999999986543
No 245
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=53.12 E-value=36 Score=20.68 Aligned_cols=62 Identities=11% Similarity=0.080 Sum_probs=43.4
Q ss_pred CCcEEEEEEecCCC------EEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEE-CCeecCCCCCcccc
Q 048514 11 QHFINLVVKGQDND------PLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLI-NGNRFPHIRTPDQL 72 (89)
Q Consensus 11 ~~~I~i~v~~~~~~------~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~f-dG~~l~~~~Tp~~l 72 (89)
+++|-|.|.-..+. .-.|.|..+.+++.++....++.+++++.--|+| ++.....+.|..+|
T Consensus 26 P~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 94 (117)
T 1eo6_A 26 PDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQL 94 (117)
T ss_dssp TTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred CCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHH
Confidence 46777877644332 2379999999999999999999999776544555 55544445566555
No 246
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.76 E-value=12 Score=19.85 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=16.6
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (70)
T 2ct3_A 19 QNEDELELREGDRVDVMQQC 38 (70)
T ss_dssp SSTTBCCBCTTEEEEEEEEC
T ss_pred CCcCCccCCCCCEEEEEEEC
Confidence 46779999999999997653
No 247
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.66 E-value=17 Score=19.95 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=16.9
Q ss_pred CCccccCCCCCCEEEEEeeec
Q 048514 67 RTPDQLGLKDGDEIVATFYAG 87 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q~ 87 (89)
..+.+|.+.-||+|.|.....
T Consensus 29 ~~~~eLs~~~Gd~i~v~~~~~ 49 (79)
T 1x69_A 29 AGDDEISFDPDDIITNIEMID 49 (79)
T ss_dssp SSSSBCCCCTTCEEEEEEECS
T ss_pred CCCCCcCcCCCCEEEEeEecC
Confidence 457799999999999986543
No 248
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}
Probab=52.38 E-value=13 Score=19.79 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=16.3
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.++.||+|.|...
T Consensus 20 ~~~~eLs~~~Gd~i~v~~~ 38 (69)
T 2dil_A 20 QNPDELDLSAGDILEVILE 38 (69)
T ss_dssp SSSSSCCBCTTCEEEEEEC
T ss_pred cCcCccCCCCCCEEEEEEC
Confidence 4678999999999999865
No 249
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Probab=52.35 E-value=13 Score=19.66 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=16.8
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 14 ~~~~eLs~~~Gd~i~v~~~~ 33 (67)
T 1gl5_A 14 TEAHDLRLERGQEYIILEKN 33 (67)
T ss_dssp SSSSBCCBCTTCEEEEEECS
T ss_pred CCCCeecCCcCCEEEEEEcc
Confidence 46789999999999998754
No 250
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}
Probab=52.10 E-value=8.1 Score=21.83 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=16.5
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.++.||+|.|....
T Consensus 31 ~~~~eLsf~~GDiI~V~~~~ 50 (83)
T 2ke9_A 31 HDPTALNVRAGDVITVLEQH 50 (83)
T ss_dssp SCTTBCCBCTTCEEEESCSS
T ss_pred CCCCcccccCCCEEEEEEec
Confidence 56789999999999987543
No 251
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.05 E-value=9.6 Score=20.36 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=16.8
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.++.||+|.|....
T Consensus 20 ~~~~eLs~~~Gd~i~v~~~~ 39 (70)
T 2ega_A 20 QENSELSLQAGEVVDVIEKN 39 (70)
T ss_dssp CSSSSCCCCTTCBCEEEEEC
T ss_pred CCCCcccCCCCCEEEEEEcc
Confidence 46789999999999997753
No 252
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=51.88 E-value=12 Score=18.85 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=16.8
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.++.||+|.|....
T Consensus 12 ~~~~eLs~~~Gd~i~v~~~~ 31 (54)
T 2a28_A 12 QGDDEISIDPGDIITVIRGD 31 (54)
T ss_dssp CSTTBCCBCTTCEEEEEECC
T ss_pred CCCCCccCCCCCEEEEEEec
Confidence 46789999999999998754
No 253
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A
Probab=51.60 E-value=14 Score=19.16 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=16.3
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 21 ~~~~eLs~~~Gd~i~v~~~~ 40 (65)
T 3ulr_B 21 AGDDEISFDPDDIITNIEMI 40 (65)
T ss_dssp CSTTBCCBCTTCEEEEEECC
T ss_pred CCcCEeeEecCCEEEEEEec
Confidence 45778999999999987653
No 254
>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}
Probab=51.49 E-value=8.1 Score=20.71 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=14.4
Q ss_pred Cccc-cCCCCCCEEEEEeee
Q 048514 68 TPDQ-LGLKDGDEIVATFYA 86 (89)
Q Consensus 68 Tp~~-l~medgD~Idv~~~q 86 (89)
.+.+ |.+..||+|.|....
T Consensus 16 ~~~e~Ls~~~Gd~i~v~~~~ 35 (60)
T 2lx7_A 16 RHGQGLRFAAGELITLLQVP 35 (60)
T ss_dssp CCSSCCCCCTTCEEEBSCCC
T ss_pred CCCCCccCCCCCEEEEeEec
Confidence 4444 999999999986543
No 255
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}
Probab=51.35 E-value=9.9 Score=20.26 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=16.7
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.++.||+|.|....
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (70)
T 2ecz_A 19 DTQVEMSFRKGERITLLRQV 38 (70)
T ss_dssp CSTTBCCCCTTCBCEEEEEE
T ss_pred CCcCCcCCCCCCEEEEEEec
Confidence 46789999999999998653
No 256
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1
Probab=51.33 E-value=16 Score=19.34 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=16.4
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 15 ~~~~eLsf~~Gd~i~v~~~~ 34 (65)
T 1b07_A 15 NDEEDLPFKKGDILRIRDKP 34 (65)
T ss_dssp SSTTBCCBCTTCEEEEEECS
T ss_pred CCCCccCCcCCCEEEEEEec
Confidence 45678999999999997654
No 257
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A
Probab=51.33 E-value=14 Score=19.97 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=16.9
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 14 ~~~~eLs~~~Gd~i~vl~~~ 33 (69)
T 2ydl_A 14 QNDDELTIKEGDIVTLINKD 33 (69)
T ss_dssp CSTTBCCBCTTCEEEEEESC
T ss_pred CCCCccccCCCCEEEEEEcC
Confidence 46789999999999998663
No 258
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=51.22 E-value=15 Score=20.17 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=16.6
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 29 ~~~~eLsf~~Gd~i~Vl~~~ 48 (72)
T 2l0a_A 29 AEDNELTFKAGEIITVLDDS 48 (72)
T ss_dssp SSTTBCCBCTTCEEEEEEEE
T ss_pred CCCCccCCCCCCEEEEEEec
Confidence 45779999999999998654
No 259
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Probab=51.22 E-value=14 Score=18.87 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=16.4
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.++.||+|.|...
T Consensus 14 ~~~~eLs~~~Gd~i~v~~~ 32 (60)
T 2v1q_A 14 ESQDELTIKSGDKVYILDD 32 (60)
T ss_dssp CSTTBCCBCTTCEEEEEES
T ss_pred CCCCCccCCCCCEEEEEeC
Confidence 4678999999999999765
No 260
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A
Probab=50.76 E-value=13 Score=20.58 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=16.6
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 17 ~~~~eLs~~~Gd~i~vl~~~ 36 (79)
T 3cqt_A 17 RTEDDLSFHKGEKFQILNSS 36 (79)
T ss_dssp CSTTBCCBCTTCEEEEEECT
T ss_pred CCcCcCCCCCCCEEEEEEec
Confidence 46789999999999997653
No 261
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}
Probab=50.73 E-value=17 Score=19.19 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=16.8
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~ 37 (69)
T 4esr_A 18 NRSDELTIHRGDIIRVFFKD 37 (69)
T ss_dssp CSTTBCCBCTTCEEEEEEEC
T ss_pred CCcCcCCCCCCCEEEEEEec
Confidence 46789999999999988654
No 262
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural protein; 1.75A {Gallus gallus}
Probab=50.73 E-value=14 Score=20.31 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=16.6
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 14 ~~~~eLs~~~Gd~i~v~~~~ 33 (80)
T 2pqh_A 14 KSPREVTMKKGDILTLLNST 33 (80)
T ss_dssp CSTTBCCBCTTCEEEEEECC
T ss_pred CCCCccCCCCCCEEEEEEec
Confidence 45779999999999998754
No 263
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Probab=50.69 E-value=18 Score=18.64 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=16.3
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~ 37 (64)
T 4f14_A 18 QDEDEVSFRDGDYIVNVQPI 37 (64)
T ss_dssp CSTTBCCBCTTCEEEEEEEC
T ss_pred cCCCcCCCCCCCEEEEEEeC
Confidence 46778999999999987653
No 264
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.49 E-value=15 Score=20.24 Aligned_cols=20 Identities=10% Similarity=0.091 Sum_probs=16.8
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 20 ~~~~eLs~~~Gd~i~vl~~~ 39 (80)
T 2ekh_A 20 VQDSEISFPAGVEVQVLEKQ 39 (80)
T ss_dssp SSTTSCCBCTTCEEEEEEEC
T ss_pred CCCCccCcCCCCEEEEEEeC
Confidence 46789999999999998654
No 265
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A
Probab=50.24 E-value=16 Score=18.78 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=16.6
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 15 ~~~~eLs~~~Gd~i~v~~~~ 34 (60)
T 1oot_A 15 EESGDLPFRKGDVITILKKS 34 (60)
T ss_dssp CSTTBCCBCTTCEEEEEECC
T ss_pred CCcCEeeEcCCCEEEEEEeC
Confidence 45789999999999998653
No 266
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A
Probab=50.00 E-value=10 Score=20.65 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=15.9
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.+..||+|.|...
T Consensus 22 ~~~~eLsf~~Gd~i~v~~~ 40 (76)
T 2ed1_A 22 DNDDELTFIEGEVIIVTGE 40 (76)
T ss_dssp SSSSBCCCCSSCEEEESSC
T ss_pred CCcCCcCcCCCCEEEEEEe
Confidence 4677999999999999753
No 267
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1
Probab=49.30 E-value=15 Score=20.74 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=17.3
Q ss_pred CCccccCCCCCCEEEEEeeec
Q 048514 67 RTPDQLGLKDGDEIVATFYAG 87 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q~ 87 (89)
..+.+|.+..||+|.|.....
T Consensus 29 ~~~~eLsf~~Gd~i~Vl~~~~ 49 (83)
T 1neg_A 29 KSPREVTMKKGDILTLLNSTN 49 (83)
T ss_dssp SSTTBCCBCTTCEEEEEECCS
T ss_pred CCCCccccCCCCEEEEEEecC
Confidence 467899999999999987543
No 268
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.12 E-value=11 Score=20.09 Aligned_cols=20 Identities=15% Similarity=0.320 Sum_probs=16.6
Q ss_pred CCCccccCCCCCCEEEEEee
Q 048514 66 IRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 66 ~~Tp~~l~medgD~Idv~~~ 85 (89)
...+.+|.++.||+|.|...
T Consensus 19 ~~~~~eLs~~~Gd~i~v~~~ 38 (71)
T 2dnu_A 19 SQSKDEIGFEKGVTVEVIRK 38 (71)
T ss_dssp CSSTTBCCBCTTCEEEECCC
T ss_pred CCCCCCCcCCCCCEEEEeEC
Confidence 35678999999999999754
No 269
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}
Probab=49.04 E-value=15 Score=19.52 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=16.3
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.+..||+|.|...
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~ 36 (71)
T 2jt4_A 18 ESQDELTIKSGDKVYILDD 36 (71)
T ss_dssp SSTTBCCBCTTCEEEEEES
T ss_pred CCCCcccCCCCCEEEEEEC
Confidence 4678999999999999865
No 270
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1
Probab=48.90 E-value=16 Score=19.52 Aligned_cols=18 Identities=17% Similarity=0.241 Sum_probs=15.7
Q ss_pred CCccccCCCCCCEEEEEe
Q 048514 67 RTPDQLGLKDGDEIVATF 84 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~ 84 (89)
..+.+|.+..||+|.|..
T Consensus 23 ~~~~eLs~~~Gd~i~v~~ 40 (71)
T 1csk_A 23 TAEQDLPFCKGDVLTIVA 40 (71)
T ss_dssp SSTTBCCBCTTCEEEEEE
T ss_pred CCCCcCCCCCCCEEEEeE
Confidence 456899999999999987
No 271
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Probab=48.79 E-value=17 Score=18.59 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=17.2
Q ss_pred CCCccccCCCCCCEEEEEeee
Q 048514 66 IRTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 66 ~~Tp~~l~medgD~Idv~~~q 86 (89)
...+.+|.+..||+|.|....
T Consensus 17 ~~~~~eLs~~~Gd~i~v~~~~ 37 (62)
T 3ngp_A 17 EKSPRELTVKKGDILTLLNST 37 (62)
T ss_dssp CCSTTBCCBCTTCEEEEEECC
T ss_pred CCCCCCccCCCCCEEEEeEec
Confidence 346789999999999997654
No 272
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=48.78 E-value=15 Score=21.00 Aligned_cols=34 Identities=9% Similarity=0.142 Sum_probs=28.0
Q ss_pred EEEEEEeccchHHHHHHHHHhhhCCC-----CCcEeEEE
Q 048514 25 PLYFEFRRDWEIKKLLITYCEKKDAQ-----YGTFPFLI 58 (89)
Q Consensus 25 ~~~f~i~~~t~l~kL~~~y~~~~g~~-----~~~~rF~f 58 (89)
.+.+.|.++.++..|.+..+++.++. .+.+++.|
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkY 41 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKY 41 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEE
Confidence 46788999999999999999999975 35566666
No 273
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.53 E-value=17 Score=20.41 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=16.5
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 29 ~~~~eLsf~~Gd~i~v~~~~ 48 (88)
T 1x2q_A 29 VEDNELTFKHGEIIIVLDDS 48 (88)
T ss_dssp CSSSCCCCCSSCEEEEEECS
T ss_pred CCcCccCCCCCCEEEEEEeC
Confidence 45678999999999998654
No 274
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.44 E-value=16 Score=19.96 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=16.4
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.++-||+|.|....
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (79)
T 2yun_A 19 RQDDELNLEKGDIVIIHEKK 38 (79)
T ss_dssp SSTTBCCBCTTCEEEEEECC
T ss_pred CCCCCcCCCCCCEEEEEEcC
Confidence 45779999999999987653
No 275
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=48.32 E-value=16 Score=19.97 Aligned_cols=18 Identities=28% Similarity=0.161 Sum_probs=15.8
Q ss_pred ccccCCCCCCEEEEEeee
Q 048514 69 PDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 69 p~~l~medgD~Idv~~~q 86 (89)
+.+|.++.||+|.|....
T Consensus 32 ~~eLsf~~Gd~i~v~~~~ 49 (78)
T 1k1z_A 32 GGFLRLNPGDIVELTKAE 49 (78)
T ss_dssp CCCCCBCTTCEEEEEECC
T ss_pred CCccCCCCCCEEEEEEcC
Confidence 689999999999998763
No 276
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*
Probab=47.67 E-value=17 Score=19.42 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=16.5
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 27 ~~~~eLs~~~Gd~i~v~~~~ 46 (73)
T 3h0h_A 27 ITEDDLSFHKGEKFQILNSS 46 (73)
T ss_dssp SSTTBCCBCTTCEEEEEECS
T ss_pred CCCCcceEeCCCEEEEEEec
Confidence 45789999999999997654
No 277
>1k3e_A CEST; chaperone, secretion, type III, intimin receptor; 2.80A {Escherichia coli} SCOP: d.198.1.1
Probab=47.40 E-value=25 Score=22.80 Aligned_cols=29 Identities=21% Similarity=0.154 Sum_probs=25.1
Q ss_pred cchHHHHHHHHHhhhCCC------CCcEeEEECCe
Q 048514 33 DWEIKKLLITYCEKKDAQ------YGTFPFLINGN 61 (89)
Q Consensus 33 ~t~l~kL~~~y~~~~g~~------~~~~rF~fdG~ 61 (89)
+..+..|++.|+++.|+| .+.+.|.+|+.
T Consensus 2 ~~~~e~LL~efg~~lGLp~L~fDeng~C~L~IDd~ 36 (156)
T 1k3e_A 2 SSRSELLLEKFAEKIGIGSISFNENRLCSFAIDEI 36 (156)
T ss_dssp CCHHHHHHHHHHHHHSCCCCCCCTTSCCEEEECCC
T ss_pred chHHHHHHHHHHHHcCCCCcccCCCCcEEEEECCe
Confidence 567899999999999998 36789999986
No 278
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=47.08 E-value=8.1 Score=20.55 Aligned_cols=20 Identities=35% Similarity=0.305 Sum_probs=16.3
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.++.||+|.|....
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (68)
T 1wi7_A 19 QNDDELELKVGDIIEVVGEV 38 (68)
T ss_dssp SSTTBCCBCTTCEECCCEEE
T ss_pred CCCCCccCcCCCEEEEEEcC
Confidence 46779999999999987653
No 279
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=47.04 E-value=24 Score=20.63 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=28.3
Q ss_pred CEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCc-cccCCCC
Q 048514 24 DPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTP-DQLGLKD 76 (89)
Q Consensus 24 ~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp-~~l~med 76 (89)
...+|.+.+-.-+.+|.+..++..++++. .|.++.+. .+||+..
T Consensus 16 ~~~~~~m~~mei~~~l~~iiae~l~~~~~---------~I~~d~~l~~dLGlDS 60 (101)
T 4dxe_H 16 ENLYFQSNAMENFDKVKDIIVDRLGVDAD---------KVTEDASFKDDLGADS 60 (101)
T ss_dssp --------CTTHHHHHHHHHHHTTCCCGG---------GCCTTCBTTTTSCCCH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHCcChh---------hCCCCCcchhhcCCCc
Confidence 34689999988999999999999998764 45666666 7777754
No 280
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}
Probab=46.94 E-value=51 Score=20.63 Aligned_cols=71 Identities=11% Similarity=0.045 Sum_probs=44.1
Q ss_pred CCcEEEEEEecCCC---EEEEEEec---c----------------chHHHHHHHHHhhhCCCC-----------CcEeEE
Q 048514 11 QHFINLVVKGQDND---PLYFEFRR---D----------------WEIKKLLITYCEKKDAQY-----------GTFPFL 57 (89)
Q Consensus 11 ~~~I~i~v~~~~~~---~~~f~i~~---~----------------t~l~kL~~~y~~~~g~~~-----------~~~rF~ 57 (89)
+....|.|.. ++. ..||+|++ + ..+..|.+.|........ ..++-+
T Consensus 46 ~g~y~LSv~~-~~~~~~v~H~~I~~~~~~~~g~~~~~~~~~~~~F~sl~eLv~~y~~~~~~~~~L~~P~~~p~~~~~~al 124 (174)
T 3qwx_X 46 PGEYSLTVRE-ADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVGT 124 (174)
T ss_dssp TTCEEEEEEC-CSSSSCEEEEEEEECCCCTTSSSCCCEEETTEEESSHHHHHHHTTSSCSSSCCCCEECCCCCSEEEEES
T ss_pred CCCEEEEEEE-CCCCCceEEEEEEeccCCCCCcccceEEECCeecCcHHHHhhhhhcCcccccccccccccccccEEEEe
Confidence 3456677765 444 66888865 1 578888888876543220 112222
Q ss_pred ECCeecCCCCCccccCCCCCCEEEEEeee
Q 048514 58 INGNRFPHIRTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 58 fdG~~l~~~~Tp~~l~medgD~Idv~~~q 86 (89)
||= ....+.+|.+..||+|.|.-..
T Consensus 125 ydy----~~~~~~eLsf~~Gd~i~v~~~~ 149 (174)
T 3qwx_X 125 FKF----TGERETDLPFEQGERLEILSKT 149 (174)
T ss_dssp SCB----CCSSTTBCCBCTTCEEEEEECC
T ss_pred cCc----ccCCCCccccccCCEEEEEEcc
Confidence 321 1346789999999999997654
No 281
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.53 E-value=13 Score=20.99 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=16.1
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.+..||+|.|...
T Consensus 29 ~~~~eLsf~~Gd~i~v~~~ 47 (90)
T 2yup_A 29 DLEVELSFRKGEHICLIRK 47 (90)
T ss_dssp CSSSBCCCCTTCEEEESSC
T ss_pred CCcCcCCCCCCCEEEEEEE
Confidence 4678899999999999764
No 282
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Probab=46.34 E-value=10 Score=20.02 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=16.4
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 20 ~~~~eLs~~~Gd~i~v~~~~ 39 (67)
T 1aww_A 20 MNANDLQLRKGDEYFILEES 39 (67)
T ss_dssp SSSSSCCCCSSCEEECCCCC
T ss_pred CCCCCccCCCCCEEEEEEcc
Confidence 46789999999999987653
No 283
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1
Probab=46.32 E-value=13 Score=19.93 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=16.0
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.+..||+|.|...
T Consensus 20 ~~~~eLs~~~Gd~i~v~~~ 38 (72)
T 1spk_A 20 NNKTLLSFAQGDVLTLLIP 38 (72)
T ss_dssp SCSSBCCBCTTCEEEECCS
T ss_pred CCCCCCcCCCCCEEEEeEc
Confidence 4678999999999999754
No 284
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=46.31 E-value=14 Score=20.04 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=16.4
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (77)
T 2d8j_A 19 RTAEDLSFRAGDKLQVLDTS 38 (77)
T ss_dssp SSSSBCCBCTTCCEEEEECC
T ss_pred CCCCccCCCCCCEEEEEECC
Confidence 45778999999999997653
No 285
>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=46.30 E-value=8 Score=23.50 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=17.4
Q ss_pred CCCccccCCCCCCEEEEEeee
Q 048514 66 IRTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 66 ~~Tp~~l~medgD~Idv~~~q 86 (89)
.....+|.++.|++++|+...
T Consensus 52 k~g~~DLpfkkGE~LeVI~~~ 72 (102)
T 1ri9_A 52 KWGTRDLQVKPGESLEVIQTT 72 (102)
T ss_dssp CCCTTBCCCCTTCBCEEEEES
T ss_pred cCCcccCCcCCCCEEEEEEeC
Confidence 445889999999999998754
No 286
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=46.09 E-value=8.6 Score=20.51 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=16.2
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (69)
T 2eqi_A 19 KRSDELTFCRGALIHNVSKE 38 (69)
T ss_dssp CSSSCCCBCTTCEEESCCCC
T ss_pred CCcCccCCCCCCEEEEEEcC
Confidence 46779999999999987543
No 287
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.41 E-value=14 Score=20.19 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=16.7
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 22 ~~~~eLs~~~Gd~i~v~~~~ 41 (76)
T 2epd_A 22 RTAQELSFRRGDVLRLHERA 41 (76)
T ss_dssp SSTTBCEECTTCEEEEEEEE
T ss_pred CCCCccCCCCCCEEEEEEeC
Confidence 46789999999999997654
No 288
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A
Probab=45.38 E-value=24 Score=18.09 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=16.6
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 17 ~~~~eLs~~~Gd~i~v~~~~ 36 (63)
T 3eg3_A 17 SGDNTLSITKGEKLRVLGYN 36 (63)
T ss_dssp CSSSBCCBCTTCEEEEEEEC
T ss_pred CCCCccCCCCCCEEEEEEeC
Confidence 46778999999999998743
No 289
>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}
Probab=45.34 E-value=23 Score=18.66 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=16.5
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 25 ~~~~eLs~~~Gd~i~v~~~~ 44 (72)
T 4glm_A 25 LEPNELDFEVGDKIRILATL 44 (72)
T ss_dssp CSTTBCCBCTTCEEEEEEEC
T ss_pred CCCCcCCCCCCCEEEEEEcc
Confidence 46778999999999987653
No 290
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A
Probab=45.10 E-value=16 Score=19.05 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=16.3
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.+..||+|.|...
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~ 36 (64)
T 2jte_A 18 TNEDELTFREGEIIHLISK 36 (64)
T ss_dssp SSSSBCCBCTTCEEEEEES
T ss_pred cCCCccCCCCCCEEEEEEC
Confidence 4677999999999999865
No 291
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=45.04 E-value=22 Score=19.14 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=16.6
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 22 ~~~~eLs~~~Gd~i~v~~~~ 41 (74)
T 1j3t_A 22 KKDNHLNFSKHDIITVLEQQ 41 (74)
T ss_dssp CSTTBCCBCTTCEEEEEEEC
T ss_pred CCCCccCCCCCCEEEEEecC
Confidence 46778999999999998653
No 292
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=44.91 E-value=15 Score=19.61 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=15.2
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.+..||+|.| ..
T Consensus 22 ~~~~eLs~~~Gd~i~v-~~ 39 (72)
T 2kgt_A 22 RTDEELSFRAGDVFHV-AR 39 (72)
T ss_dssp SSTTSCBCCTTCCEEE-EE
T ss_pred CCcCCcCCCCCCEEEE-ee
Confidence 4678999999999999 54
No 293
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A
Probab=44.89 E-value=15 Score=20.30 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=15.8
Q ss_pred CCccccCCCCCCEEEEEe
Q 048514 67 RTPDQLGLKDGDEIVATF 84 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~ 84 (89)
..+.+|.++.||+|.|.-
T Consensus 17 ~~~~eLs~~~Gd~I~V~~ 34 (83)
T 3i5r_A 17 EREEDIDLHLGDILTVNK 34 (83)
T ss_dssp CSTTBCCBCTTCEEEEEH
T ss_pred CCCCccccCCCCEEEEee
Confidence 478899999999999973
No 294
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=44.72 E-value=38 Score=24.18 Aligned_cols=55 Identities=0% Similarity=-0.009 Sum_probs=38.3
Q ss_pred EEEEecCCC----EEEEEEeccchHHHHHHHHHhhhCCC-CCcEeEEE--C--Ce--ecCCCCCcc
Q 048514 16 LVVKGQDND----PLYFEFRRDWEIKKLLITYCEKKDAQ-YGTFPFLI--N--GN--RFPHIRTPD 70 (89)
Q Consensus 16 i~v~~~~~~----~~~f~i~~~t~l~kL~~~y~~~~g~~-~~~~rF~f--d--G~--~l~~~~Tp~ 70 (89)
++|.-.+|. ...|++..+++.+.|++..|++.|+. .+-+-+.+ . |+ .|.++.+..
T Consensus 10 l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~ 75 (375)
T 2al6_A 10 FHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVS 75 (375)
T ss_dssp ECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHH
T ss_pred EEEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchh
Confidence 344445666 88999999999999999999999994 34444444 2 22 355555543
No 295
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Probab=44.71 E-value=14 Score=18.89 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=16.3
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 15 ~~~~eLs~~~Gd~i~v~~~~ 34 (60)
T 2x3w_D 15 QEQDELSFKAGDELTKLGEE 34 (60)
T ss_dssp SSSSBCCBCTTCEEEECSCC
T ss_pred cCCCcccCCCCCEEEEEEcc
Confidence 45779999999999987643
No 296
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1
Probab=44.59 E-value=21 Score=19.00 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=17.1
Q ss_pred CCCccccCCCCCCEEEEEeee
Q 048514 66 IRTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 66 ~~Tp~~l~medgD~Idv~~~q 86 (89)
...+.+|.+.-||+|.|....
T Consensus 16 ~~~~~eLs~~~Gd~i~v~~~~ 36 (73)
T 3thk_A 16 EKSPREVTMKKGDILTLLNST 36 (73)
T ss_dssp CCSTTBCCBCTTCEEEEEECC
T ss_pred cCCCCccCCCCCCEEEEEECC
Confidence 346789999999999997653
No 297
>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A
Probab=44.50 E-value=13 Score=19.22 Aligned_cols=19 Identities=16% Similarity=0.134 Sum_probs=15.8
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.+..||+|.|...
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~ 31 (60)
T 1i07_A 13 RNSSELSVMKDDVLEILDD 31 (60)
T ss_dssp SSTTBCCBCTTCEEEECGG
T ss_pred CCCCcccCCCCCEEEEEEc
Confidence 4677999999999998654
No 298
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A
Probab=44.03 E-value=16 Score=20.78 Aligned_cols=17 Identities=35% Similarity=0.647 Sum_probs=15.4
Q ss_pred CCccccCCCCCCEEEEE
Q 048514 67 RTPDQLGLKDGDEIVAT 83 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~ 83 (89)
+.+.+|.+..||+|.|.
T Consensus 23 ~~~~ELsf~~GD~I~V~ 39 (90)
T 3o5z_A 23 ERPEDLELLPGDVLVVS 39 (90)
T ss_dssp CSTTBCCBCTTCEEEEE
T ss_pred CCCCccCCcCCCEEEEE
Confidence 57889999999999986
No 299
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.85 E-value=17 Score=19.27 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=16.8
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (71)
T 2cre_A 19 DCSDELAFSRGDILTILEQH 38 (71)
T ss_dssp SSSSBCCCCSSCCEEEEESC
T ss_pred CCCCCCCCCCCCEEEEeEcC
Confidence 46789999999999998753
No 300
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.80 E-value=7.3 Score=21.02 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=16.3
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 20 ~~~~eLsf~~Gd~i~v~~~~ 39 (71)
T 2gqi_A 20 PDTDEISFLKGDMFIVHNEL 39 (71)
T ss_dssp TTSSCCCCCTTCBCCCCEEC
T ss_pred CCCCCCCCCCCCEEEEEEec
Confidence 56789999999999887553
No 301
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.80 E-value=22 Score=19.97 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=17.3
Q ss_pred CCCccccCCCCCCEEEEEeee
Q 048514 66 IRTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 66 ~~Tp~~l~medgD~Idv~~~q 86 (89)
...+.+|.+..||+|.|....
T Consensus 28 ~~~~~eLs~~~Gd~i~v~~~~ 48 (88)
T 2cub_A 28 AEREDELSLIKGTKVIVMEKC 48 (88)
T ss_dssp CCSTTBCCCCTTEEEEEEEEC
T ss_pred CCCCCCcCCCCCCEEEEEEcc
Confidence 346789999999999998764
No 302
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=43.74 E-value=17 Score=18.44 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=16.8
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~ 32 (58)
T 1zuu_A 13 KDDDEITITPGDKISLVARD 32 (58)
T ss_dssp CSTTBCCBCTTCCEEEEECC
T ss_pred cCCCcccCCCCCEEEEeEcC
Confidence 46779999999999998654
No 303
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.60 E-value=17 Score=19.31 Aligned_cols=19 Identities=11% Similarity=0.141 Sum_probs=16.2
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.+..||+|.|...
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~ 37 (68)
T 1wxb_A 19 RNANELSVLKDEVLEVLED 37 (68)
T ss_dssp SSSSBCCBCTTCEEEEEEC
T ss_pred CCCCccCCCCCCEEEEEEc
Confidence 4678999999999999754
No 304
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.57 E-value=23 Score=19.40 Aligned_cols=20 Identities=25% Similarity=0.230 Sum_probs=16.5
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 22 ~~~~eLs~~~Gd~i~v~~~~ 41 (81)
T 2ysq_A 22 MANRELAFKAGDVIKVLDAS 41 (81)
T ss_dssp SSSSSCCCCTTCEEEEEECC
T ss_pred CCCCcCCCCCCCEEEEEEEc
Confidence 46778999999999997653
No 305
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}
Probab=43.56 E-value=14 Score=19.54 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=15.6
Q ss_pred CCccccCCCCCCEEEEEe
Q 048514 67 RTPDQLGLKDGDEIVATF 84 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~ 84 (89)
..+.+|.+..||+|.|..
T Consensus 19 ~~~~eLs~~~Gd~i~v~~ 36 (67)
T 2kxc_A 19 SNKTLLSFAQGDVITLLI 36 (67)
T ss_dssp SCSSBCCBCTTCEEEESS
T ss_pred CCCCCCcCCCCCEEEEeE
Confidence 467899999999999975
No 306
>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus}
Probab=43.55 E-value=6.9 Score=24.58 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=15.6
Q ss_pred CCCccccCCCCCCEEEEEe
Q 048514 66 IRTPDQLGLKDGDEIVATF 84 (89)
Q Consensus 66 ~~Tp~~l~medgD~Idv~~ 84 (89)
-++++.||++|||.|.|.-
T Consensus 59 p~dA~~lGI~dGd~V~V~s 77 (146)
T 2ki8_A 59 EEDWNALGLQEGDRVKVKT 77 (146)
T ss_dssp HHHHHHHTCCTTCEEEEEC
T ss_pred HHHHHHcCCCCCCEEEEEe
Confidence 4567899999999998764
No 307
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.53 E-value=21 Score=19.69 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=16.7
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 29 ~~~~eLsf~~Gd~i~v~~~~ 48 (81)
T 1x6g_A 29 PKPGELAFRKGDVVTILEAC 48 (81)
T ss_dssp CCTTCCCBCTTCEEEEEECC
T ss_pred CCCCCCCCCCCCEEEEEecc
Confidence 46789999999999997653
No 308
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=43.41 E-value=21 Score=18.94 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=16.5
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.+..||+|.|...
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~ 37 (70)
T 2da9_A 19 QNDDELTIKEGDIVTLINK 37 (70)
T ss_dssp SSTTBCCCCTTEEEEEEEC
T ss_pred CCcCEeeEcCCCEEEEEEC
Confidence 4678999999999999865
No 309
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Probab=43.24 E-value=22 Score=18.99 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=16.4
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.+..||+|.|...
T Consensus 21 ~~~~eLs~~~Gd~i~v~~~ 39 (73)
T 2k9g_A 21 QNDDELTIKEGDIVTLINK 39 (73)
T ss_dssp SSTTBCCBCTTCEEEEEEC
T ss_pred CCCCeeeECCCCEEEEEEC
Confidence 4678999999999999865
No 310
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}
Probab=43.05 E-value=19 Score=19.08 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=16.7
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 15 ~~~~eLs~~~Gd~i~v~~~~ 34 (69)
T 1wyx_A 15 ESPDELSFRKGDIMTVLEQD 34 (69)
T ss_dssp SSTTBCCBCTTCEEEEEETT
T ss_pred CCCCccCCcCCCEEEEeECC
Confidence 46789999999999997654
No 311
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A
Probab=42.84 E-value=20 Score=18.55 Aligned_cols=19 Identities=16% Similarity=0.321 Sum_probs=16.1
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.+..||+|.|...
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~ 36 (62)
T 2iim_A 18 SHDGDLGFEKGEQLRILEQ 36 (62)
T ss_dssp CSTTBCCBCTTCEEEEEEC
T ss_pred CCCCCcCCCCCCEEEEEEc
Confidence 4677999999999999765
No 312
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Probab=42.84 E-value=12 Score=20.16 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=16.1
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.++.||+|.|..+.
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (73)
T 2dbm_A 19 ENEGELGFKEGDIITLTNQI 38 (73)
T ss_dssp CSTTCCCBCTTCEEECCBCS
T ss_pred CCCCCccCCCCCEEEEEEec
Confidence 45679999999999987653
No 313
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Probab=42.69 E-value=12 Score=19.78 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=16.2
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 22 ~~~~eLs~~~Gd~i~v~~~~ 41 (68)
T 1s1n_A 22 QQVGDLTFKKGEILLVIEKK 41 (68)
T ss_dssp SSSSCCCBCSSEEEEECSCC
T ss_pred CCCCcCCCCCCCEEEEEEcC
Confidence 45779999999999987653
No 314
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=42.67 E-value=34 Score=20.90 Aligned_cols=26 Identities=8% Similarity=0.093 Sum_probs=20.6
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccch
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDWE 35 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t~ 35 (89)
++..-.+++.....+.+.|+||-+.+
T Consensus 23 ~gg~~~l~L~N~t~~~vAFKVKtT~p 48 (116)
T 1m1s_A 23 TGGNSTHNITSESDSRLAFKVKSSNN 48 (116)
T ss_dssp TCEEEEEEEEECSSSEEEEEEEESCT
T ss_pred CCCEEEEEEECCCCCeEEEEEEecCC
Confidence 45577888888778889999988765
No 315
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=42.37 E-value=60 Score=20.14 Aligned_cols=60 Identities=13% Similarity=0.215 Sum_probs=48.6
Q ss_pred CEEEEEEeccchHHHHHHH-----HHhh---hCCCCCcEeEEECCeecCC--CCCccccCCCCCCEEEEE
Q 048514 24 DPLYFEFRRDWEIKKLLIT-----YCEK---KDAQYGTFPFLINGNRFPH--IRTPDQLGLKDGDEIVAT 83 (89)
Q Consensus 24 ~~~~f~i~~~t~l~kL~~~-----y~~~---~g~~~~~~rF~fdG~~l~~--~~Tp~~l~medgD~Idv~ 83 (89)
....|.+-+.+||+.|.+. |+.+ ..++.+......+|+...+ +.|.++.|+..-+.|...
T Consensus 38 ap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 38 APFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp SCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred CceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 4568999999999998754 4432 2346788999999999985 679999999999998875
No 316
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A
Probab=42.29 E-value=22 Score=18.81 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=16.1
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.+..||+|.|...
T Consensus 20 ~~~~eLs~~~Gd~i~v~~~ 38 (68)
T 2k2m_A 20 RNSSELSVKQRDVLEVLDD 38 (68)
T ss_dssp CSSSBCCBCTTCEEEEEEC
T ss_pred CCCCcccCCCCCEEEEEEc
Confidence 4677999999999999765
No 317
>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repres; NMR {Sulfolobus islandicus rod-shaped virus}
Probab=42.25 E-value=22 Score=18.90 Aligned_cols=32 Identities=25% Similarity=0.403 Sum_probs=25.9
Q ss_pred CCCEEEEEEeccchHHHHHHHHHhhhCCCCCc
Q 048514 22 DNDPLYFEFRRDWEIKKLLITYCEKKDAQYGT 53 (89)
Q Consensus 22 ~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~ 53 (89)
++....|.|+-+..|.+-+..||...|.+.+.
T Consensus 10 ~k~kg~~~vrId~eLH~rlk~~Aa~~g~Sln~ 41 (56)
T 2kel_A 10 KKQKAVFGIYMDKDLKTRLKVYCAKNNLQLTQ 41 (56)
T ss_dssp -CCEEEEEEEEEHHHHHHHHHHHHHSCCCHHH
T ss_pred ccCeeeEEEEeCHHHHHHHHHHHHHcCCCHHH
Confidence 45566788888889999999999999987654
No 318
>2gmq_A Hypothetical protein EF0006; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG, unknown function; HET: MSE; 1.76A {Enterococcus faecalis} SCOP: b.122.1.11
Probab=41.72 E-value=26 Score=21.28 Aligned_cols=70 Identities=10% Similarity=0.115 Sum_probs=46.3
Q ss_pred CcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCC-CCCcEeEEECCeecCCCCCcc--ccCCCCCCEEE
Q 048514 12 HFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDA-QYGTFPFLINGNRFPHIRTPD--QLGLKDGDEIV 81 (89)
Q Consensus 12 ~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~-~~~~~rF~fdG~~l~~~~Tp~--~l~medgD~Id 81 (89)
..+++..++..|+-+.++++.+..|.-+.+.----.++ ....+.++=+|+.|.-.--|+ -++-+....|+
T Consensus 21 K~~~~~W~G~~GrL~~ir~K~~r~~Em~~N~QiT~ENI~EI~~i~iiKNGKsL~L~V~~ErS~~~~~~~~~~~ 93 (118)
T 2gmq_A 21 KDLTLQWRGNTGKLVKVRLKNTRAMEMWYNKQITEENIQEITTLNIIKNGKSLALEVYPEKSIYVKPNLGRIN 93 (118)
T ss_dssp GGEEEEEGGGTSBEEEEEECHHHHHHHHHHTSSCTTTGGGCCEEEEEETTEEEEEEBCGGGCEEECC---CCC
T ss_pred hhhheeeecccceEEEEEeeCCceeeehhhCCCChhhceeeeeeeeecCCcEEEEEEccccceeccccCceee
Confidence 45788888888999999999988888776554434444 357788999999887544333 23444444443
No 319
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.63 E-value=24 Score=18.92 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=16.2
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.+..||+|.|...
T Consensus 20 ~~~~eLsf~~Gd~i~v~~~ 38 (73)
T 2dl7_A 20 QTDDELSFPEGAIIRILNK 38 (73)
T ss_dssp SSTTBCCBCTTCEEEEEEC
T ss_pred CCCCcCCCCCCCEEEEEEC
Confidence 4577899999999999865
No 320
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}
Probab=41.32 E-value=21 Score=18.89 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=16.3
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.+..||+|.|...
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~ 37 (68)
T 1wxt_A 19 RNPRELTVVQGEKLEVLDH 37 (68)
T ss_dssp CSSSBCCBCTTCEEEEEEC
T ss_pred CCcCcCCCCCCCEEEEEEc
Confidence 4678999999999999765
No 321
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=41.21 E-value=42 Score=26.14 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=45.2
Q ss_pred EEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEee
Q 048514 15 NLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 15 ~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~ 85 (89)
.+.+.+.++..+.|.-.....+..|...|.+-..-...-..=++|=.. .+.+.|..|.+.-||+|.+...
T Consensus 537 ~ftl~~~~~~~~~F~T~~a~~I~~LI~~yi~~Lk~rs~~~~Al~d~~~-~~~~~~~~L~f~kGDlI~l~~~ 606 (655)
T 3pvl_A 537 SFTLATIKGDEYTFTSSNAEDIRDLVVTFLEGLRKRSKYVVALQDNPN-PAGEESGFLSFAKGDLIILDHD 606 (655)
T ss_dssp EEEEEETTSCEEEEECTTHHHHHHHHHHHHHHHHHHCCEEEESSCCCC------CCBCCCCTTCEEEESSC
T ss_pred EEEEEeccCceEEEEcCCHHHHHHHHHHHHHHHhhcchhhhHHhhccc-CCCCCCCcccccCCCEEEEccc
Confidence 334445567778888888899999999999755332233333344321 1235688999999999988654
No 322
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Probab=41.06 E-value=20 Score=19.03 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=16.2
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.+..||+|.|...
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~ 36 (71)
T 1u5s_A 18 VTEEELNFEKGETMEVIEK 36 (71)
T ss_dssp CSSSBCCCCSSCCEEEEEC
T ss_pred CCCCcccCCCCCEEEEEEC
Confidence 4577899999999999875
No 323
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A
Probab=40.56 E-value=29 Score=19.10 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=16.4
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 37 ~~~~eLs~~~Gd~i~v~~~~ 56 (86)
T 2oi3_A 37 IHHEDLSFQKGDQMVVLEES 56 (86)
T ss_dssp SSSSCCCCCTTCEEEEEEES
T ss_pred CCCCcCcCCCCCEEEEEEcC
Confidence 45678999999999997654
No 324
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=40.55 E-value=21 Score=19.02 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=15.8
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.+..||+|.|...
T Consensus 20 ~~~~eLs~~~Gd~i~v~~~ 38 (69)
T 1uhf_A 20 VEPGDLTFTEGEEILVTQK 38 (69)
T ss_dssp SSSSBCCBCTTCEEEECEE
T ss_pred CCcCccCCCCCCEEEEEEe
Confidence 4578999999999998654
No 325
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.40 E-value=18 Score=20.14 Aligned_cols=19 Identities=21% Similarity=0.109 Sum_probs=16.0
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.+..||+|.|...
T Consensus 20 ~~~~eLsf~~Gd~i~v~~~ 38 (85)
T 2dlp_A 20 DNCSLLSFHRGDLIKLLPV 38 (85)
T ss_dssp SSSSBCCBCTTCEEEECCC
T ss_pred cCcCCccCcCCCEEEEEEc
Confidence 4677999999999999764
No 326
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.91 E-value=22 Score=19.74 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=16.6
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 31 ~~~~eLs~~~Gd~i~v~~~~ 50 (85)
T 2yuq_A 31 NDPQELALRRNEEYCLLDSS 50 (85)
T ss_dssp SCSSBCCCCBTEEEEEEECC
T ss_pred CCCCcCCCCCCCEEEEEEec
Confidence 46779999999999997654
No 327
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.47 E-value=16 Score=20.73 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=16.9
Q ss_pred CCCccccCCCCCCEEEEEee
Q 048514 66 IRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 66 ~~Tp~~l~medgD~Idv~~~ 85 (89)
.+.+.+|.+..||+|.|...
T Consensus 27 ~~~~~eLs~~~Gd~i~v~~~ 46 (94)
T 2e5k_A 27 PQNDDELELVPGDFIFMSPM 46 (94)
T ss_dssp CSSSSBCCBCTTCEEEECGG
T ss_pred CCCCCCcCCCCCCEEEEEEC
Confidence 35678999999999999765
No 328
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.22 E-value=23 Score=18.78 Aligned_cols=20 Identities=5% Similarity=0.240 Sum_probs=16.7
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 19 ~~~~eLs~~~Gd~i~vl~~~ 38 (70)
T 2ct4_A 19 SSEGTISMAEGEDLSLMEED 38 (70)
T ss_dssp CSTTCCCBCTTCEEEEEECC
T ss_pred CCCCcCCCCCCCEEEEEecc
Confidence 56789999999999997653
No 329
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=38.57 E-value=28 Score=18.95 Aligned_cols=20 Identities=15% Similarity=0.418 Sum_probs=16.7
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 25 ~~~~eLs~~~Gd~i~vl~~~ 44 (79)
T 1uhc_A 25 RNPNELSVSANQKLKILEFK 44 (79)
T ss_dssp CSSSBCCBCTTCEEEEEESC
T ss_pred CCCCccCCCCCCEEEEEECC
Confidence 46779999999999998654
No 330
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=38.29 E-value=9.9 Score=28.22 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=29.0
Q ss_pred EEEEeccchHHHHHHHHHhhhC--CCCCcE--------eEEECCe--------ecCCCCCccccCCCCCCEEEEE
Q 048514 27 YFEFRRDWEIKKLLITYCEKKD--AQYGTF--------PFLINGN--------RFPHIRTPDQLGLKDGDEIVAT 83 (89)
Q Consensus 27 ~f~i~~~t~l~kL~~~y~~~~g--~~~~~~--------rF~fdG~--------~l~~~~Tp~~l~medgD~Idv~ 83 (89)
.+.+..+.+++.+.+.+|++.. +..-++ +.+|+.. +-.-..|..+|++.+|++|.|.
T Consensus 344 ~~~~~~~~tl~~~~~~l~~~~~~~~~~~~is~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~g~~~~v~ 418 (434)
T 1tt5_B 344 NIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 418 (434)
T ss_dssp CCCC-----CTTHHHHHHHCSSCCCSSCCCEET----TEECCCCCCTTTTTTSCC-CCC-----CCCSSCCEECC
T ss_pred eEEECCCccHHHHHHHHhccCccceEccEEEEEccCCCcEEEecCCcchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 4555556678889999999754 432222 4455522 1123567889999999988763
No 331
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}
Probab=38.28 E-value=32 Score=18.39 Aligned_cols=19 Identities=11% Similarity=0.144 Sum_probs=16.1
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.+..||+|.|..+
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~ 37 (72)
T 2jw4_A 19 QQEQELDIKKNERLWLLDD 37 (72)
T ss_dssp SSTTSCCCCTTCEEEEEEC
T ss_pred CCCCcccCCCCCEEEEEEC
Confidence 4678999999999999764
No 332
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=38.25 E-value=25 Score=19.26 Aligned_cols=19 Identities=16% Similarity=0.123 Sum_probs=16.3
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.+..||+|.|...
T Consensus 29 ~~~~eLs~~~Gd~i~v~~~ 47 (81)
T 1x43_A 29 ANSTELSLLADEVITVFSV 47 (81)
T ss_dssp SSTTBCCCCTTCEEEEECC
T ss_pred CCCCcCCCCCCCEEEEEEc
Confidence 4567999999999999875
No 333
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.24 E-value=30 Score=18.96 Aligned_cols=18 Identities=6% Similarity=0.047 Sum_probs=15.5
Q ss_pred CCccccCCCCCCEEEEEe
Q 048514 67 RTPDQLGLKDGDEIVATF 84 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~ 84 (89)
..+.+|.+..||+|.|..
T Consensus 29 ~~~~eLs~~~Gd~i~v~~ 46 (79)
T 2cud_A 29 PDISPPIFRRGEKLRVIS 46 (79)
T ss_dssp TTTSCCSSCTTCEEEEEE
T ss_pred CCCCcCCCCCCCEEEEEe
Confidence 457789999999999986
No 334
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A
Probab=38.24 E-value=33 Score=18.35 Aligned_cols=19 Identities=11% Similarity=0.141 Sum_probs=16.0
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.+..||+|.|...
T Consensus 16 ~~~~ELsf~~Gd~i~vl~~ 34 (67)
T 2b86_A 16 QQDQELDIKKNERLWLLDD 34 (67)
T ss_dssp SSTTSCCBCTTCEEEEEEC
T ss_pred CCCCccccCCCCEEEEEec
Confidence 4578999999999999765
No 335
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=38.19 E-value=37 Score=19.34 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=14.2
Q ss_pred ccccCCCCCCEEEEE
Q 048514 69 PDQLGLKDGDEIVAT 83 (89)
Q Consensus 69 p~~l~medgD~Idv~ 83 (89)
+.+|.+..||+|.|.
T Consensus 37 ~~eLsf~~Gd~i~v~ 51 (96)
T 1wie_A 37 EAELPLTAGKYLYVY 51 (96)
T ss_dssp TTBCCCCTTCEEEEE
T ss_pred CCeeeECCCCEEEEe
Confidence 789999999999998
No 336
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1
Probab=38.14 E-value=24 Score=18.51 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=13.7
Q ss_pred CccccCCCCCCEEEEEe
Q 048514 68 TPDQLGLKDGDEIVATF 84 (89)
Q Consensus 68 Tp~~l~medgD~Idv~~ 84 (89)
.+++|.+..||+|.|..
T Consensus 21 ~~e~Lsf~~Gd~i~v~~ 37 (67)
T 3rnj_A 21 NSTLLSFKEGDLITLLV 37 (67)
T ss_dssp CTTBCCBCTTCEEEECS
T ss_pred CCCCccCCCCCEEEEee
Confidence 34459999999999874
No 337
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Probab=38.03 E-value=22 Score=21.29 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=15.9
Q ss_pred CCccccCCCCCCEEEEEe
Q 048514 67 RTPDQLGLKDGDEIVATF 84 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~ 84 (89)
..+.+|.++.||+|.|..
T Consensus 56 ~~~dELsf~~GDiI~Vl~ 73 (115)
T 1bb9_A 56 TDTDELQLKAGDVVLVIP 73 (115)
T ss_dssp SSTTBCCBCTTCEEEEEC
T ss_pred CCCCccCcCCCCEEEEee
Confidence 467889999999999987
No 338
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=37.75 E-value=32 Score=19.20 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=16.3
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.++.||+|.|...
T Consensus 29 ~~~~eLs~~~Gd~i~v~~~ 47 (91)
T 1wx6_A 29 VTEEELNFEKGETMEVIEK 47 (91)
T ss_dssp SSSSBCCCCTTCEEEEEEC
T ss_pred CCCCcccCCCCCEEEEEEC
Confidence 4578999999999999875
No 339
>2gw6_A TRNA-splicing endonuclease subunit SEN15; SEN15_human, tRNA endonuclease, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: c.52.2.1
Probab=37.62 E-value=51 Score=20.24 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=19.5
Q ss_pred CCCcEEEEEEecCCCEEEEEEe
Q 048514 10 DQHFINLVVKGQDNDPLYFEFR 31 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~ 31 (89)
++.+|+|.+.+.|+..++++|.
T Consensus 101 ~~~ri~LaIv~~DSTIVYY~v~ 122 (123)
T 2gw6_A 101 LPMSFTLAIVESDSTIVYYKLT 122 (123)
T ss_dssp CCCEEEEEEECTTSCEEEEEEE
T ss_pred CCCEEEEEEEcCCCCEEEEEEe
Confidence 6679999999999999999874
No 340
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=37.49 E-value=58 Score=19.90 Aligned_cols=37 Identities=14% Similarity=0.314 Sum_probs=26.6
Q ss_pred CCCcEEEEEEecCCCEE-EEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCee
Q 048514 10 DQHFINLVVKGQDNDPL-YFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNR 62 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~-~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~ 62 (89)
+...++|.|.+.+|+.+ ++.+. ..+....+|.|||..
T Consensus 37 ~a~~v~v~I~d~~G~~V~t~~~~----------------~~~aG~~~~~WDg~d 74 (138)
T 3c12_A 37 SAGFVNFEITDANGTFVKQLSVP----------------ASAAGEVSFAWDGTD 74 (138)
T ss_dssp SSEEEEEEEECSSCCEEEEEEEE----------------ESSSEEEEEEECSBC
T ss_pred CCCEEEEEEEeCCCCEEEEEEcC----------------CcCCceEEEEECCcC
Confidence 45678999998888865 45543 244567899999974
No 341
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=37.43 E-value=65 Score=20.00 Aligned_cols=33 Identities=9% Similarity=0.105 Sum_probs=28.9
Q ss_pred CCCEEEEEEeccchHHHHHHHHHhhhCCCCCcE
Q 048514 22 DNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTF 54 (89)
Q Consensus 22 ~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~ 54 (89)
.|+.+.+++.+...+-.=.+.||+..++....+
T Consensus 11 ~g~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v 43 (147)
T 3hwu_A 11 TPTGYLMVLRHGDNVLQNLEQLARDEHIPSASF 43 (147)
T ss_dssp ETTEEEEEEETTCBHHHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHcCCCEEEE
Confidence 378889999999999999999999999976544
No 342
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...
Probab=37.28 E-value=27 Score=19.48 Aligned_cols=20 Identities=10% Similarity=0.212 Sum_probs=16.6
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+.-||+|.|....
T Consensus 18 ~~~~eLsf~~Gd~i~vl~~~ 37 (84)
T 4ag1_C 18 TRWTDLSFHKGEKFQILEFG 37 (84)
T ss_dssp SBTTBCCBCTTCEEEEEECC
T ss_pred CCCCcccccCCCEEEEEEec
Confidence 45789999999999997654
No 343
>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus}
Probab=37.23 E-value=94 Score=22.26 Aligned_cols=69 Identities=14% Similarity=0.084 Sum_probs=39.1
Q ss_pred CCCcEEEEEEecCCCEEEEEE--eccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCcccc--------CCCCCCE
Q 048514 10 DQHFINLVVKGQDNDPLYFEF--RRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQL--------GLKDGDE 79 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i--~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l--------~medgD~ 79 (89)
+...+.|++. .||+.+.=-- ...-.+..|....++...+.+..+- + +-||.-. -|+.||+
T Consensus 234 d~~~l~l~l~-vNGe~~q~g~t~dMif~~~~lIa~lS~~~tL~pGDvI--~-------TGTp~GvG~~~~p~~~l~~GD~ 303 (329)
T 3r6o_A 234 TFETFDFELR-INGELRQSGSTVDMTLGFAEVVETVSATIALRAGDII--L-------TGTPGGCGFQFDPPRYLRPGDV 303 (329)
T ss_dssp SCCCCEEEEE-ETTEEEEEEEGGGCSSCHHHHHHHHHTTSCBCTTCEE--E-------CCCCSCCGGGSSSCCCCCTTCE
T ss_pred ChhhcEEEEE-ECCEEEEecCHHHhcCCHHHHHHHHHcCCCcCCCCEE--E-------cCCccccCCCCCCCccCCCCCE
Confidence 3344455543 3665442111 2223566777776666666555543 3 3455443 5999999
Q ss_pred EEEEeeecC
Q 048514 80 IVATFYAGG 88 (89)
Q Consensus 80 Idv~~~q~G 88 (89)
|++.++-.|
T Consensus 304 V~~ei~glG 312 (329)
T 3r6o_A 304 IEAHSAKLG 312 (329)
T ss_dssp EEEEETTTE
T ss_pred EEEEEcCce
Confidence 999887554
No 344
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=37.14 E-value=20 Score=20.37 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=16.3
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.++.||+|.|..+.
T Consensus 17 ~~~~eLsf~~Gd~i~v~~~~ 36 (93)
T 1uff_A 17 RNHDEMSFNSGDIIQVDEKT 36 (93)
T ss_dssp CSSSCCCBCTTCEEEECSSC
T ss_pred CCCCCcCCCCCCEEEEeEcc
Confidence 45678999999999997653
No 345
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.87 E-value=26 Score=18.94 Aligned_cols=18 Identities=11% Similarity=0.207 Sum_probs=15.3
Q ss_pred ccccCCCCCCEEEEEeee
Q 048514 69 PDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 69 p~~l~medgD~Idv~~~q 86 (89)
+.+|.+..||+|.|....
T Consensus 23 ~~eLs~~~Gd~i~vl~~~ 40 (75)
T 2egc_A 23 EETAGFQEGVSMEVLERN 40 (75)
T ss_dssp SSSCCBCTTCEEEECEEC
T ss_pred CCcCCCCCCCEEEEEEcC
Confidence 678999999999997653
No 346
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=36.68 E-value=27 Score=16.83 Aligned_cols=26 Identities=4% Similarity=-0.079 Sum_probs=21.0
Q ss_pred EEEEeccchHHHHHHHHHhhhCCCCC
Q 048514 27 YFEFRRDWEIKKLLITYCEKKDAQYG 52 (89)
Q Consensus 27 ~f~i~~~t~l~kL~~~y~~~~g~~~~ 52 (89)
.+.|+-...+..-++.+|+..|.+.+
T Consensus 4 ritv~l~~~l~~~Ld~~a~~~g~srS 29 (45)
T 2cpg_A 4 RLTITLSESVLENLEKMAREMGLSKS 29 (45)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHTCCHH
T ss_pred eEEEecCHHHHHHHHHHHHHHCcCHH
Confidence 45667778899999999999998654
No 347
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=36.55 E-value=78 Score=19.79 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=36.6
Q ss_pred chHHHHHHHHHhhhCCCC-------CcEeEEEC-CeecCCCCCccccCCCCCCEEEEE
Q 048514 34 WEIKKLLITYCEKKDAQY-------GTFPFLIN-GNRFPHIRTPDQLGLKDGDEIVAT 83 (89)
Q Consensus 34 t~l~kL~~~y~~~~g~~~-------~~~rF~fd-G~~l~~~~Tp~~l~medgD~Idv~ 83 (89)
.+|..|.+...+++|.+. +..|++|| .-.=.-..|..+||+.+|.+|-|.
T Consensus 20 ~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~ 77 (127)
T 3onh_A 20 MKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFS 77 (127)
T ss_dssp CBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEE
T ss_pred cCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEE
Confidence 588888888777777642 24567776 444446789999999999888765
No 348
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1
Probab=36.30 E-value=25 Score=22.42 Aligned_cols=76 Identities=14% Similarity=0.222 Sum_probs=51.3
Q ss_pred CCcEEEEEEec-CCCEEEEEEeccchHHHHHHHHHhhhCC--CCCcEeEEECCeecCCCCCccccCCC-CCCEEEEEeee
Q 048514 11 QHFINLVVKGQ-DNDPLYFEFRRDWEIKKLLITYCEKKDA--QYGTFPFLINGNRFPHIRTPDQLGLK-DGDEIVATFYA 86 (89)
Q Consensus 11 ~~~I~i~v~~~-~~~~~~f~i~~~t~l~kL~~~y~~~~g~--~~~~~rF~fdG~~l~~~~Tp~~l~me-dgD~Idv~~~q 86 (89)
+.-|...+++. +|+.+-+.--....|. .+....... +.+.-+++..|+.=...+...++-+. |+|.|-+.++|
T Consensus 21 ~GLipaIvQd~~tg~VLMlayMN~EAl~---~Tl~tg~~~y~SRSR~~LW~KGetSG~~Q~v~~i~~DCD~D~LL~~V~q 97 (138)
T 1zps_A 21 EDLIIAVAQDHETGEVLMVAYMNREALR---RTLETGTAHYWSTSRGKLWLKGESSGHVQRVKDVLVDCDGDAVVLKVEQ 97 (138)
T ss_dssp CCCEEEEEEETTTCCEEEEEEECHHHHH---HHHHHSBCEEEETTTTEEEETTTTTSCCEEEEEEEECTTSSEEEEEEEE
T ss_pred CCcEEEEEEECCCCCEEEEEecCHHHHH---HHHhcCcEEEEcCCCCccccCccCCCCcEEEEEEEecCCCCEEEEEEEe
Confidence 56788888884 5666544333333333 333332222 56677899999887777777777765 79999999999
Q ss_pred cCC
Q 048514 87 GGA 89 (89)
Q Consensus 87 ~GG 89 (89)
.||
T Consensus 98 ~G~ 100 (138)
T 1zps_A 98 EGG 100 (138)
T ss_dssp SSC
T ss_pred cCC
Confidence 996
No 349
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}
Probab=36.21 E-value=30 Score=19.26 Aligned_cols=19 Identities=11% Similarity=0.141 Sum_probs=15.9
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.+..||+|.|..+
T Consensus 43 ~~~~eLs~~~Gd~i~v~~~ 61 (86)
T 2jxb_A 43 QQDQELDIKKNERLWLLDD 61 (86)
T ss_dssp CSSSBCCCCTTEEEEEEEC
T ss_pred CCCCEeccCCCCEEEEEec
Confidence 4567999999999999764
No 350
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=35.95 E-value=14 Score=20.01 Aligned_cols=19 Identities=32% Similarity=0.350 Sum_probs=15.7
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.+.-||+|.|...
T Consensus 22 ~~~~eLs~~~Gd~i~v~~~ 40 (76)
T 1ujy_A 22 TNEDELSVCKGDIIYVTRV 40 (76)
T ss_dssp SSTTSCCBCSSCCEEESSC
T ss_pred CCCCcccCCCCCEEEEEEe
Confidence 4677999999999998754
No 351
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.90 E-value=18 Score=19.45 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=16.5
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (73)
T 2dm1_A 19 RDMRELSLREGDVVRIYSRI 38 (73)
T ss_dssp CSTTBCCBCTTCEEECCBSS
T ss_pred CCCCcCCCCCCCEEEEEEec
Confidence 46789999999999987653
No 352
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=35.86 E-value=20 Score=23.60 Aligned_cols=19 Identities=32% Similarity=0.789 Sum_probs=8.2
Q ss_pred cccCCCCCCEEEEEeeecC
Q 048514 70 DQLGLKDGDEIVATFYAGG 88 (89)
Q Consensus 70 ~~l~medgD~Idv~~~q~G 88 (89)
+.|.++|||+|.+.+.-.|
T Consensus 206 ~~l~l~~g~~v~~~~~~~~ 224 (230)
T 3cta_A 206 EEINLHDGDRVSVEVYTEG 224 (230)
T ss_dssp --------CEEEEEECC--
T ss_pred hhcCCCCCCEEEEEEEecC
Confidence 3588999999999988766
No 353
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=35.82 E-value=32 Score=19.54 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=16.3
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.+..||+|.|...
T Consensus 41 ~~~~ELsf~~GD~I~Vl~~ 59 (89)
T 2rf0_A 41 AGDEELTLRRGDRVQVLSQ 59 (89)
T ss_dssp SSTTBCCBCTTCEEEEEEC
T ss_pred CCCCccccCCCCEEEEEec
Confidence 4577999999999999876
No 354
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}
Probab=35.78 E-value=71 Score=20.11 Aligned_cols=23 Identities=9% Similarity=0.136 Sum_probs=18.0
Q ss_pred ccchHHHHHHHHHhhhCCCCCcE
Q 048514 32 RDWEIKKLLITYCEKKDAQYGTF 54 (89)
Q Consensus 32 ~~t~l~kL~~~y~~~~g~~~~~~ 54 (89)
---.+..++.+||+..|+.++.+
T Consensus 132 d~~~~~~~~~~~~~~~g~~~~~~ 154 (159)
T 3ebr_A 132 NWKTSMDRYLNYCKAHGIRPKDL 154 (159)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCCC
T ss_pred CHHHHHHHHHHHHHHcCCCcccc
Confidence 34566778999999999987654
No 355
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}
Probab=35.37 E-value=36 Score=20.38 Aligned_cols=20 Identities=15% Similarity=0.255 Sum_probs=16.9
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 15 ~~~~ELsf~~Gd~i~vl~~~ 34 (120)
T 2kym_A 15 ERDDELDVSPGENLSICAHY 34 (120)
T ss_dssp CSTTCCCBCTTCEEEEEEEE
T ss_pred CCCCccCCCCCCEEEEEEec
Confidence 46789999999999998654
No 356
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=35.20 E-value=28 Score=19.87 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=16.3
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 46 ~~~~eLs~~~Gd~i~v~~~~ 65 (98)
T 1udl_A 46 NNEDELSFSKGQLINVMNKD 65 (98)
T ss_dssp SSTTSCCCCTTCEEEECBCC
T ss_pred CCCCccCCcCCCEEEEEEec
Confidence 35679999999999987653
No 357
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}
Probab=35.03 E-value=1.1e+02 Score=21.01 Aligned_cols=71 Identities=13% Similarity=0.092 Sum_probs=44.2
Q ss_pred CCcEEEEEEecCCC---EEEEEEec---c----------------chHHHHHHHHHhhhCCC------C-----CcEeEE
Q 048514 11 QHFINLVVKGQDND---PLYFEFRR---D----------------WEIKKLLITYCEKKDAQ------Y-----GTFPFL 57 (89)
Q Consensus 11 ~~~I~i~v~~~~~~---~~~f~i~~---~----------------t~l~kL~~~y~~~~g~~------~-----~~~rF~ 57 (89)
+....|.|+. ++. ..||+|.. + ..+..|.+.|....... . ..++-+
T Consensus 75 ~g~y~LSv~~-~~~~~~v~H~~I~~~~~~~~g~~~g~~~~~~~~F~Sl~eLv~~y~~~~~~~~~L~~P~~~p~~~~~~al 153 (308)
T 3qwy_A 75 PGEYSLTVRE-ADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVGT 153 (308)
T ss_dssp TTCEEEEEEC-CSSSSCEEEEEEEECCCCTTTTCCCCEEETTEEESSHHHHHHHHHHSCSSSCCCCEECCCCCCEEEEES
T ss_pred CCCEEEEEEe-CCCCCceEEEEEeeccCCCcCcccceEEEeCeeeCCHHHHHHHHhhcccccchhccccccccceeEEEe
Confidence 3455677765 344 66888865 1 46788888887654421 0 112333
Q ss_pred ECCeecCCCCCccccCCCCCCEEEEEeee
Q 048514 58 INGNRFPHIRTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 58 fdG~~l~~~~Tp~~l~medgD~Idv~~~q 86 (89)
||= ....+.+|.+..||+|.|....
T Consensus 154 ~dy----~~~~~~eLsf~~Gd~i~v~~~~ 178 (308)
T 3qwy_A 154 FKF----TGERETDLPFEQGERLEILSKT 178 (308)
T ss_dssp SCB----CCSSTTBCCBCTTCEEEEEECC
T ss_pred ceE----cCCCCCcCcCCCCCEEEEEEcC
Confidence 331 2357789999999999998654
No 358
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=34.54 E-value=45 Score=18.24 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=29.6
Q ss_pred HhhhCCCCCcEeEEECCeecCCCC--CccccCCCCCCEEEEEeeec
Q 048514 44 CEKKDAQYGTFPFLINGNRFPHIR--TPDQLGLKDGDEIVATFYAG 87 (89)
Q Consensus 44 ~~~~g~~~~~~rF~fdG~~l~~~~--Tp~~l~medgD~Idv~~~q~ 87 (89)
|++.|+.....-+.+||..+.... ....+=-..|+.+.+.+..-
T Consensus 40 A~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~ 85 (91)
T 2pkt_A 40 AALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVARS 85 (91)
T ss_dssp HHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEEE
T ss_pred HHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence 566789999999999999998654 22221112677777766543
No 359
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=34.27 E-value=78 Score=19.13 Aligned_cols=49 Identities=10% Similarity=0.030 Sum_probs=37.6
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccchHHHHHH-HHHhhhCC-------CCCcEeEEE
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDWEIKKLLI-TYCEKKDA-------QYGTFPFLI 58 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~-~y~~~~g~-------~~~~~rF~f 58 (89)
.+..+.|.+.-.+|--+.+++.++.+|+.|+. .+.+.... +.++..|..
T Consensus 16 ~~~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~ 72 (108)
T 2v1y_A 16 MPPRILVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVS 72 (108)
T ss_dssp CCSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEE
T ss_pred CCCcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEE
Confidence 45789999998999999999999999999986 44443333 456666665
No 360
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=34.13 E-value=42 Score=17.99 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=16.4
Q ss_pred CccccCCCCCCEEEEEeee
Q 048514 68 TPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 68 Tp~~l~medgD~Idv~~~q 86 (89)
.+.+|.+..||+|.|....
T Consensus 23 ~~~eLs~~~Gd~i~v~~~~ 41 (77)
T 2enm_A 23 GNNELTVTEGEIITVTNPN 41 (77)
T ss_dssp TSSBCCCCTTCEEEEEESC
T ss_pred CCCeecCCCCCEEEEeEcc
Confidence 6779999999999998753
No 361
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A
Probab=34.10 E-value=20 Score=19.35 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=16.3
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 21 ~~~~eLs~~~Gd~i~v~~~~ 40 (74)
T 1gbq_A 21 TADDELSFKRGDILKVLNEE 40 (74)
T ss_dssp SSTTBCCBCTTCEEECCBCS
T ss_pred CCCCeeeEcCCCEEEEeEec
Confidence 46779999999999987644
No 362
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.09 E-value=30 Score=18.80 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=16.8
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.++.||+|.|....
T Consensus 25 ~~~~eLs~~~Gd~i~v~~~~ 44 (78)
T 2dl5_A 25 SQPDELTIEEHEVLEVIEDG 44 (78)
T ss_dssp CSTTBCCBCSSEEEEEEECC
T ss_pred CCCCCCCCCCCCEEEEEecc
Confidence 46779999999999998764
No 363
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}
Probab=33.90 E-value=37 Score=19.53 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=16.3
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 39 ~~~~eLs~~~Gd~i~v~~~~ 58 (109)
T 2yt6_A 39 RTTEDLSFKKGERFQIINNT 58 (109)
T ss_dssp SSTTSCCCCTTCEEEEEECS
T ss_pred CCCCccCCCCCCEEEEEEcc
Confidence 35789999999999997653
No 364
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=33.60 E-value=50 Score=25.84 Aligned_cols=50 Identities=8% Similarity=0.010 Sum_probs=42.9
Q ss_pred CCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEEC-CeecCCCCCcccc
Q 048514 23 NDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLIN-GNRFPHIRTPDQL 72 (89)
Q Consensus 23 ~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fd-G~~l~~~~Tp~~l 72 (89)
.....|.+.++.++..|...-.+..|++.++..|++. |..+.++..+.++
T Consensus 321 ~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 321 GRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred cccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 4455899999999999999999999999999999997 7777777777764
No 365
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=33.44 E-value=58 Score=18.54 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=41.0
Q ss_pred EEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCcccc--CCCCCCEEEEEeee
Q 048514 14 INLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQL--GLKDGDEIVATFYA 86 (89)
Q Consensus 14 I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l--~medgD~Idv~~~q 86 (89)
+.+.....++...-+.|.+..+=+ .+++.|+....+-..+||+++........+ .+..|+.+.+.+..
T Consensus 25 ~g~~~~~~~~~~~G~~V~~~~pas-----~A~~aGl~~GDvI~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v~R 94 (105)
T 2i4s_A 25 VRLSQVKRDDKVLGYRVSPGKDPV-----LFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVER 94 (105)
T ss_dssp EEEEEEEETTEEEEEEEEECSCTH-----HHHHHTCCTTCEEEEETTEETTSTTHHHHHHHHHTTCSEEEEEEEE
T ss_pred ceeEEEecCCcEEEEEEecCCCCC-----HHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCeEEEEEEE
Confidence 334433334443445565555422 445669999999999999999865543322 23567777776643
No 366
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}
Probab=32.92 E-value=12 Score=20.96 Aligned_cols=20 Identities=25% Similarity=0.232 Sum_probs=16.3
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 30 ~~~~eLsf~~Gd~I~Vl~~~ 49 (79)
T 1z9q_A 30 NSKLELNFKAGDVIFLLSRI 49 (79)
T ss_dssp SSTTBCCCCTTCCBCCCEES
T ss_pred CCCCcccccCCCEEEEeEec
Confidence 46789999999999887653
No 367
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=32.69 E-value=37 Score=19.15 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=23.4
Q ss_pred hCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 47 KDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 47 ~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
.+.|.-++.|. +.+..- --+++.||.|.+.+++.+|
T Consensus 34 l~wpaMTM~F~-----v~~~~~--l~~lk~Gd~V~F~~~~~~~ 69 (80)
T 2qcp_X 34 VNWPEMTMRFT-----ITPQTK--MSEIKTGDKVAFNFVQQGN 69 (80)
T ss_dssp GTBCSEEEEEE-----CCTTCE--ECCCCTTCEEEEEEEEETT
T ss_pred CCCCceEEEEE-----ccChhh--hhcCCCCCEEEEEEEEeCC
Confidence 45555566663 333322 3468999999998888765
No 368
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.59 E-value=27 Score=19.05 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=16.4
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
..+.+|.+..||+|.|....
T Consensus 29 ~~~~eLsf~~Gd~i~v~~~~ 48 (80)
T 2d8h_A 29 QQPGDLNFQAGDRITVISKT 48 (80)
T ss_dssp SSTTBCEECTTCEEEEEECC
T ss_pred CCCCeeeEcCCCEEEEeECc
Confidence 35678999999999998754
No 369
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=32.31 E-value=76 Score=18.43 Aligned_cols=46 Identities=9% Similarity=-0.052 Sum_probs=33.6
Q ss_pred CcEEEEEEecCCCEEEEEEecc--chHHHHHHHHHhhhCCCCCcEeEEE
Q 048514 12 HFINLVVKGQDNDPLYFEFRRD--WEIKKLLITYCEKKDAQYGTFPFLI 58 (89)
Q Consensus 12 ~~I~i~v~~~~~~~~~f~i~~~--t~l~kL~~~y~~~~g~~~~~~rF~f 58 (89)
..+.||.+- +.+-..|.+.++ .++..++......+.++...+...|
T Consensus 5 ~~l~vKskf-~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y 52 (86)
T 1wmh_B 5 SIVEVKSKF-DAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGY 52 (86)
T ss_dssp CEEEEEEEE-TTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEE
T ss_pred CEEEEEeec-CCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEE
Confidence 445555542 444458999866 7899999999998888777777777
No 370
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=32.24 E-value=31 Score=18.72 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=16.4
Q ss_pred CCcc-ccCCCCCCEEEEEeee
Q 048514 67 RTPD-QLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~-~l~medgD~Idv~~~q 86 (89)
+.+. +|.+..||+|.|....
T Consensus 19 ~~~~dELsf~~Gd~i~Vl~~~ 39 (69)
T 1nm7_A 19 ENPEMEVALKKGDLMAILSKK 39 (69)
T ss_dssp SSTTSCCCCCTTCEEEECCSS
T ss_pred CCCCCccCCCCCCEEEEEecC
Confidence 4567 9999999999997654
No 371
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}
Probab=31.88 E-value=18 Score=20.78 Aligned_cols=19 Identities=37% Similarity=0.319 Sum_probs=16.0
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.+..||+|.|...
T Consensus 30 ~~~~eLsf~~Gd~i~V~~~ 48 (92)
T 2o2o_A 30 QNDDELELKVGDIIEVVGE 48 (92)
T ss_dssp CSSSCCCBCSSCEEECCCG
T ss_pred CCCccccccCCCEEEEeEe
Confidence 4678999999999998754
No 372
>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=31.79 E-value=39 Score=18.23 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=16.4
Q ss_pred CCcc-ccCCCCCCEEEEEeee
Q 048514 67 RTPD-QLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~-~l~medgD~Idv~~~q 86 (89)
..+. +|.+..||+|.|....
T Consensus 26 ~~~~~eLs~~~Gd~i~v~~~~ 46 (80)
T 2v1r_A 26 ENPEMEVALKKGDLMAILSKK 46 (80)
T ss_dssp SSTTTBCCBCTTCEEEEEEEE
T ss_pred CCCCCEecCCCCCEEEEEECC
Confidence 3566 9999999999998764
No 373
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}
Probab=31.56 E-value=30 Score=18.29 Aligned_cols=16 Identities=0% Similarity=0.113 Sum_probs=13.6
Q ss_pred ccccCCCCCCEEEEEe
Q 048514 69 PDQLGLKDGDEIVATF 84 (89)
Q Consensus 69 p~~l~medgD~Idv~~ 84 (89)
+.+|.+..||+|.|..
T Consensus 21 ~~eLsf~~Gd~i~v~~ 36 (70)
T 2vkn_A 21 AYEISFEQNEILQVSD 36 (70)
T ss_dssp TTBCCBCTTCEEEEEC
T ss_pred CCcccCCCCCEEEEEE
Confidence 4599999999998864
No 374
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=31.42 E-value=55 Score=16.55 Aligned_cols=24 Identities=8% Similarity=0.173 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhhCCCCCcEeEEEC
Q 048514 36 IKKLLITYCEKKDAQYGTFPFLIN 59 (89)
Q Consensus 36 l~kL~~~y~~~~g~~~~~~rF~fd 59 (89)
.+.|.+++++..|++.+.+...|.
T Consensus 21 ~~~lt~~l~~~lg~~~~~v~V~i~ 44 (64)
T 3abf_A 21 VRRLTEMASRLLGEPYEEVRVILY 44 (64)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred HHHHHHHHHHHhCCCcccEEEEEE
Confidence 455778888899999888776554
No 375
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Probab=31.25 E-value=1e+02 Score=19.63 Aligned_cols=70 Identities=21% Similarity=0.158 Sum_probs=41.9
Q ss_pred CcEEEEEEecCCCEEEEEEecc------------chHHHHHHHHHhhhCCCC----------------CcEeEEECCeec
Q 048514 12 HFINLVVKGQDNDPLYFEFRRD------------WEIKKLLITYCEKKDAQY----------------GTFPFLINGNRF 63 (89)
Q Consensus 12 ~~I~i~v~~~~~~~~~f~i~~~------------t~l~kL~~~y~~~~g~~~----------------~~~rF~fdG~~l 63 (89)
....|.+.. .+...||+|.+. ..+..|.+.|.... +.. ..++=+||=.
T Consensus 93 g~~~LSv~~-~~~v~h~~I~~~~~g~~~~~~~~f~sl~eLv~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~al~~y~-- 168 (217)
T 1gri_A 93 GDFSLSVKF-GNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTS-VSRNQQIFLRDIEQVPQQPTYVQALFDFD-- 168 (217)
T ss_dssp TCEEEEEEE-TTEEEEEEEEECSSSCEESSSCEESSHHHHHHHHHHSC-SSSSTTCCCCBCCCCCCCCCEEEESSCCC--
T ss_pred CCEEEEEEE-CCEEEEEEEEEcCCCCEEEeeeEcCCHHHHHHhhhccc-cccccceeecccccCCCCceEEEecCCcc--
Confidence 345566654 344557888653 46788888886432 111 1122233321
Q ss_pred CCCCCccccCCCCCCEEEEEeeec
Q 048514 64 PHIRTPDQLGLKDGDEIVATFYAG 87 (89)
Q Consensus 64 ~~~~Tp~~l~medgD~Idv~~~q~ 87 (89)
...+.+|.+..||+|.|....-
T Consensus 169 --~~~~~eL~~~~Gd~i~v~~~~~ 190 (217)
T 1gri_A 169 --PQEDGELGFRRGDFIHVMDNSD 190 (217)
T ss_dssp --CSSTTBCCCCTTCEEEEEECCS
T ss_pred --CCCCCcCCCCCCCEEEEEEeCC
Confidence 3456899999999999986643
No 376
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=31.05 E-value=41 Score=21.51 Aligned_cols=61 Identities=15% Similarity=0.013 Sum_probs=40.3
Q ss_pred EEEEEEeccchHHHHHHHHHhhhCCC-----CCcEeEEE-C---Ce-------------ec-CCCCCccccCCCCCCEEE
Q 048514 25 PLYFEFRRDWEIKKLLITYCEKKDAQ-----YGTFPFLI-N---GN-------------RF-PHIRTPDQLGLKDGDEIV 81 (89)
Q Consensus 25 ~~~f~i~~~t~l~kL~~~y~~~~g~~-----~~~~rF~f-d---G~-------------~l-~~~~Tp~~l~medgD~Id 81 (89)
++.+..=++.+|..|-....+..--. .=+++|+| | |. +- .++.|..++...-||.|+
T Consensus 55 ElQIYTW~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDyid 134 (143)
T 4a6q_A 55 ELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLD 134 (143)
T ss_dssp CEEEEECTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCEEE
T ss_pred eeEEeeCCCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCEEE
Confidence 57777788999998866555433211 11344443 2 21 11 368899999999999999
Q ss_pred EEee
Q 048514 82 ATFY 85 (89)
Q Consensus 82 v~~~ 85 (89)
|.+-
T Consensus 135 vaI~ 138 (143)
T 4a6q_A 135 IAIT 138 (143)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9874
No 377
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=31.04 E-value=56 Score=19.89 Aligned_cols=11 Identities=9% Similarity=0.030 Sum_probs=8.7
Q ss_pred cCCCCCCEEEE
Q 048514 72 LGLKDGDEIVA 82 (89)
Q Consensus 72 l~medgD~Idv 82 (89)
..|.+||+|.+
T Consensus 109 ~~L~~GD~I~~ 119 (130)
T 4h87_A 109 CRVHVGHVVRF 119 (130)
T ss_dssp EECCTTCEEEE
T ss_pred eECCCCCEEEE
Confidence 45899999965
No 378
>3p14_A L-rhamnose isomerase; TIM barrel; 2.51A {Bacillus halodurans} SCOP: c.1.15.2 PDB: 3uu0_A 3uva_A 3uxi_A
Probab=31.01 E-value=29 Score=26.01 Aligned_cols=21 Identities=14% Similarity=0.498 Sum_probs=18.7
Q ss_pred ccchHHHHHHHHHhhhCCCCC
Q 048514 32 RDWEIKKLLITYCEKKDAQYG 52 (89)
Q Consensus 32 ~~t~l~kL~~~y~~~~g~~~~ 52 (89)
++-|+..+.+.||.+.++|..
T Consensus 385 k~~p~~~vw~~~c~~~~vp~~ 405 (424)
T 3p14_A 385 KTYPLGAIWNEYCERMNVPIK 405 (424)
T ss_dssp GGSSHHHHHHHHHHHTTCCCT
T ss_pred hcCChHHHHHHHHHhcCCCCc
Confidence 567999999999999999874
No 379
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=30.75 E-value=41 Score=19.35 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=23.8
Q ss_pred hCCCCCcEeEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q 048514 47 KDAQYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 47 ~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
.+.|.-++.|. +.+..- --+++.||.|.+.+++.+|
T Consensus 42 l~wpaMTM~F~-----v~~~~~--l~~lk~Gd~V~F~~~~~~~ 77 (88)
T 2vb2_X 42 VNWPEMTMRFT-----ITPQTK--MSEIKTGDKVAFNFVQQGN 77 (88)
T ss_dssp GTBCSEEEEEE-----CCTTCE--ECCCCTTCEEEEEEEEETT
T ss_pred CCCCceEEEEE-----cCChhh--hhcCCCCCEEEEEEEEeCC
Confidence 45566666663 333322 2468999999999888765
No 380
>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}
Probab=30.48 E-value=25 Score=18.69 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=16.2
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.+..||+|.|...
T Consensus 23 ~~~~eLs~~~Gd~i~v~~~ 41 (74)
T 2m0y_A 23 RGADELSLQIGDTVHILET 41 (74)
T ss_dssp CSSSBCCEETTEEEEEEEB
T ss_pred CCcCcccCCCCCEEEEEEc
Confidence 4678899999999998765
No 381
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=30.45 E-value=41 Score=16.85 Aligned_cols=29 Identities=7% Similarity=-0.065 Sum_probs=22.5
Q ss_pred CEEEEEEeccchHHHHHHHHHhhhCCCCC
Q 048514 24 DPLYFEFRRDWEIKKLLITYCEKKDAQYG 52 (89)
Q Consensus 24 ~~~~f~i~~~t~l~kL~~~y~~~~g~~~~ 52 (89)
....+.|+-+..-..+++.+|+..|++.+
T Consensus 14 r~~~i~vRlt~eE~~~l~~~A~~~g~s~S 42 (51)
T 2ba3_A 14 KTVVRTLRFSPVEDETIRKKAEDSGLTVS 42 (51)
T ss_dssp CSEEEEEEECHHHHHHHHHHHHHHTCCHH
T ss_pred CceeEEEEECHHHHHHHHHHHHHhCCCHH
Confidence 34566777778888899999999998754
No 382
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=30.39 E-value=57 Score=16.81 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=16.7
Q ss_pred HHHHHHHHhhhCCCCCcEeEEEC
Q 048514 37 KKLLITYCEKKDAQYGTFPFLIN 59 (89)
Q Consensus 37 ~kL~~~y~~~~g~~~~~~rF~fd 59 (89)
..|-+++++..|++++.+...+.
T Consensus 20 ~~it~~~~~~lg~~~~~v~V~i~ 42 (62)
T 3m20_A 20 ERLTSVAAEIYGMDRSAITILIH 42 (62)
T ss_dssp HHHHHHHHHHHTCCTTSCEEEEE
T ss_pred HHHHHHHHHHhCcCcceEEEEEE
Confidence 44667788899999887765553
No 383
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=30.37 E-value=1.4e+02 Score=20.81 Aligned_cols=41 Identities=10% Similarity=0.117 Sum_probs=35.7
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCC
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQ 50 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~ 50 (89)
.-.++.++|-..||....+.|.++++-+.|.+..+.+.++.
T Consensus 28 ~~~k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~ 68 (281)
T 4gmv_A 28 QVKKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCG 68 (281)
T ss_dssp SSCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCC
T ss_pred CcccEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCC
Confidence 34678888888899999999999999999999999888764
No 384
>3osv_A Flagellar basal-BODY ROD modification protein FLG; FLGD, flagellum, P. aeruginosa, structural protein; 2.35A {Pseudomonas aeruginosa}
Probab=30.27 E-value=95 Score=18.90 Aligned_cols=41 Identities=10% Similarity=0.157 Sum_probs=27.3
Q ss_pred CCCcEEEEEEecCCCEE-EEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCC
Q 048514 10 DQHFINLVVKGQDNDPL-YFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHI 66 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~-~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~ 66 (89)
....++|.|.+.+|+.+ ++.+.. .+....+|.|||..-..+
T Consensus 35 ~a~~v~v~I~d~~G~~V~t~~~g~----------------~~aG~~~f~WDG~d~~G~ 76 (138)
T 3osv_A 35 SSSNVWVNVYDDKGTVVNRINLGQ----------------QAAGSVSFMWDGKDSSGN 76 (138)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEE----------------ECSEEEEEEECSBCTTSC
T ss_pred CCcEEEEEEEcCCCCEEEEEEcCC----------------cCCceEEEEECCcCCCCC
Confidence 34578888988888865 455432 345567899998754433
No 385
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.19 E-value=40 Score=18.16 Aligned_cols=18 Identities=22% Similarity=0.091 Sum_probs=15.5
Q ss_pred ccccCCCCCCEEEEEeee
Q 048514 69 PDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 69 p~~l~medgD~Idv~~~q 86 (89)
+.+|.+..||+|.|....
T Consensus 28 ~~eLsf~~Gd~i~v~~~~ 45 (76)
T 2csi_A 28 EAELTFCTGDIITVFGEI 45 (76)
T ss_dssp TTSCCCCTTCEEEEESSC
T ss_pred CCcccCCCCCEEEEeEec
Confidence 789999999999997653
No 386
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=30.06 E-value=56 Score=22.63 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=35.1
Q ss_pred CCcEEEEEEecCCCEEEEEEec--cchHHHHHHHHHhhhCCCC---CcEeEEECC
Q 048514 11 QHFINLVVKGQDNDPLYFEFRR--DWEIKKLLITYCEKKDAQY---GTFPFLING 60 (89)
Q Consensus 11 ~~~I~i~v~~~~~~~~~f~i~~--~t~l~kL~~~y~~~~g~~~---~~~rF~fdG 60 (89)
.+++.+.|.-.||....+.|.. +++-+.| |+..|++. +-+-+++..
T Consensus 3 ~~~~~i~V~l~dg~~~~~~i~~~~~tt~~el----~e~lgL~~~~~~~FaL~~~~ 53 (322)
T 4dxa_B 3 PEFEKVRIYRMDGSYRSVELKHGNNTTVQQI----MEGMRLSQETQQYFTIWICS 53 (322)
T ss_dssp --CCEEEEECTTSCEEEEECTTGGGCCHHHH----HTTSSCCTTGGGGEEEEEEC
T ss_pred CCceEEEEEEECCcEEEEEEcCCCCCcHHHH----HHHhCcCccccCeeEEEEEC
Confidence 4678888888999999999998 8888888 56688853 457776653
No 387
>1d8w_A L-rhamnose isomerase; beta-alpha-8-barrels, aldose-ketose isomerization, hydride shift; 1.60A {Escherichia coli} SCOP: c.1.15.2 PDB: 1de5_A* 1de6_A*
Probab=29.63 E-value=33 Score=25.69 Aligned_cols=21 Identities=19% Similarity=0.523 Sum_probs=18.5
Q ss_pred ccchHHHHHHHHHhhhCCCCC
Q 048514 32 RDWEIKKLLITYCEKKDAQYG 52 (89)
Q Consensus 32 ~~t~l~kL~~~y~~~~g~~~~ 52 (89)
++-|+..+.+.||.+.++|..
T Consensus 387 k~~P~~avwd~~c~~~~vp~~ 407 (426)
T 1d8w_A 387 KSLPWQAVWEMYCQRHDTPAG 407 (426)
T ss_dssp TTSCHHHHHHHHHHHTTCCCS
T ss_pred hcCChHHHHHHHHHHcCCCCc
Confidence 467899999999999999864
No 388
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=29.62 E-value=29 Score=20.09 Aligned_cols=20 Identities=20% Similarity=0.415 Sum_probs=13.5
Q ss_pred ECCeecCCCCCccccCCCCCCEEEE
Q 048514 58 INGNRFPHIRTPDQLGLKDGDEIVA 82 (89)
Q Consensus 58 fdG~~l~~~~Tp~~l~medgD~Idv 82 (89)
.||++|.. ..-|.+||+|.+
T Consensus 73 vng~~i~~-----~~~L~~Gd~i~~ 92 (106)
T 3gqs_A 73 VEGRKIEH-----QSTLSANQVVAL 92 (106)
T ss_dssp ETTEECSS-----EEECCTTCCEEE
T ss_pred ECCEECCC-----CeECCCCCEEEE
Confidence 46666654 346889998865
No 389
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=29.20 E-value=43 Score=20.09 Aligned_cols=66 Identities=14% Similarity=0.076 Sum_probs=38.2
Q ss_pred CCEEEEEEec----cchHHHHHHHHHhhhCCCC-------C--c----EeEEECCeecCCCCCccccCCCCCCEEEEEee
Q 048514 23 NDPLYFEFRR----DWEIKKLLITYCEKKDAQY-------G--T----FPFLINGNRFPHIRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 23 ~~~~~f~i~~----~t~l~kL~~~y~~~~g~~~-------~--~----~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~ 85 (89)
|+...+.+.. ..+++.|++..++++.... + + +-.+.||..+..- -=.+.-++|||.|.++..
T Consensus 20 g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l-~gldt~L~dgD~V~fist 98 (110)
T 2k9x_A 20 AKQTSLQLDGVVPTGTNLNGLVQLLKTNYVKERPDLLVDQTGQTLRPGILVLVNSCDAEVV-GGMDYVLNDGDTVEFIST 98 (110)
T ss_dssp TSCSEECCCCSCGGGCCHHHHHHHHTTTTCCSCHHHHBCSSSSSBCTTEEEEESSSBHHHH-TSSCCCCCSSCEEEEEEC
T ss_pred CCeEEEEeCCcCCCCccHHHHHHHHHHHccccchhhEecCCCcccCCCeEEEECCeeeecc-CCcccCCCCcCEEEEeCC
Confidence 3334555552 2489999998888752211 1 1 3356666555311 012345899999888776
Q ss_pred ecCC
Q 048514 86 AGGA 89 (89)
Q Consensus 86 q~GG 89 (89)
.-||
T Consensus 99 lhg~ 102 (110)
T 2k9x_A 99 LHGG 102 (110)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 6665
No 390
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}
Probab=29.05 E-value=48 Score=18.39 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=16.6
Q ss_pred CCCccccCCCCCCEEEEEee
Q 048514 66 IRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 66 ~~Tp~~l~medgD~Idv~~~ 85 (89)
...+.+|.+..||+|.|...
T Consensus 14 ~~~~~eLs~~~Gd~i~v~~~ 33 (90)
T 3reb_B 14 SWSPDDLSFQKGDQMVVLEE 33 (90)
T ss_dssp CSSTTBCCBCTTCEEEEEEC
T ss_pred cCCcCcCCCCCCCEEEEEEe
Confidence 34678999999999998765
No 391
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.70 E-value=41 Score=18.11 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=14.4
Q ss_pred ccccCCCCCCEEEEEe
Q 048514 69 PDQLGLKDGDEIVATF 84 (89)
Q Consensus 69 p~~l~medgD~Idv~~ 84 (89)
+.+|.+..||+|.|..
T Consensus 28 ~~eLsf~~Gd~i~v~~ 43 (75)
T 2ege_A 28 KGRLALRAGDVVMVYG 43 (75)
T ss_dssp CCBCCBCTTCEEEEES
T ss_pred CCcceECCCCEEEEeE
Confidence 6789999999999985
No 392
>2d9r_A Conserved hypothetical protein; MCSG, structural genomics, hypothe protein, PSI, protein structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: b.129.2.1
Probab=28.52 E-value=34 Score=20.48 Aligned_cols=17 Identities=24% Similarity=0.430 Sum_probs=14.5
Q ss_pred ccCCCCCCEEEEEeeec
Q 048514 71 QLGLKDGDEIVATFYAG 87 (89)
Q Consensus 71 ~l~medgD~Idv~~~q~ 87 (89)
.++.+.||+|+|.++.+
T Consensus 88 a~g~~~GD~V~V~L~~~ 104 (104)
T 2d9r_A 88 AIGKQPGDSVYVTLLPL 104 (104)
T ss_dssp HHTCCTTSEEEEEEEEC
T ss_pred HcCCCCCCEEEEEEEEC
Confidence 67899999999998753
No 393
>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis}
Probab=28.11 E-value=87 Score=22.69 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=27.9
Q ss_pred cEeEEECCeecC--CCCCccccCCCCCCEEEEEeeecCC
Q 048514 53 TFPFLINGNRFP--HIRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 53 ~~rF~fdG~~l~--~~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
.=.+.|+|++|. ....|+++...+-+ +|+.++-+|+
T Consensus 64 ~~~l~inGk~I~v~~e~dp~~i~w~~~g-vDiVlesTG~ 101 (345)
T 4dib_A 64 EDHLLVDGKMIRLLNNRDPKELPWTDLG-VEVVIEATGK 101 (345)
T ss_dssp SSEEEETTEEEEEECCSCGGGSCTTTTT-EEEEEECSSS
T ss_pred CCEEEECCEEEEEeecCChhhCCccccC-ccEEEEeccC
Confidence 346899999877 46789999887655 7888887774
No 394
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=28.09 E-value=71 Score=20.47 Aligned_cols=51 Identities=10% Similarity=-0.005 Sum_probs=35.4
Q ss_pred cCCCEEEEEEeccchHHHHHHHHHhhhCCCC-------CcEeEEECCeecCCCCCccc
Q 048514 21 QDNDPLYFEFRRDWEIKKLLITYCEKKDAQY-------GTFPFLINGNRFPHIRTPDQ 71 (89)
Q Consensus 21 ~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~-------~~~rF~fdG~~l~~~~Tp~~ 71 (89)
.||+.+.+.+.+.++|..+........|... .+.....||+.+..-.||..
T Consensus 10 vNG~~~~~~v~~~~tLLd~LR~~lgltg~k~gC~~G~CGaCtV~vdG~~v~sC~~~~~ 67 (163)
T 1ffv_A 10 VNGKAQEKAVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDIDGRSVKSCTHLAV 67 (163)
T ss_dssp ETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEETTEEEEGGGSBGG
T ss_pred ECCEEEEEecCCCCcHHHHHHhcCCCcccccCCCCCCCCCCEEEECCcEecchHhhHH
Confidence 3889989999999888776654322222221 24578889999988888765
No 395
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=27.99 E-value=48 Score=18.74 Aligned_cols=18 Identities=28% Similarity=0.222 Sum_probs=13.7
Q ss_pred CCCccccCCCCCCEEEEE
Q 048514 66 IRTPDQLGLKDGDEIVAT 83 (89)
Q Consensus 66 ~~Tp~~l~medgD~Idv~ 83 (89)
..+|+.-||+.||+|-.+
T Consensus 16 ~~spA~~GL~~GD~I~~I 33 (100)
T 3i18_A 16 DDVPAADVLHAGDLITEI 33 (100)
T ss_dssp TTSGGGGTCCTTCEEEEE
T ss_pred CCCchHHCCCCCCEEEEE
Confidence 346666799999998654
No 396
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=27.80 E-value=43 Score=19.09 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=12.9
Q ss_pred ECCeecCCCCCccccCCCCCCEEEE
Q 048514 58 INGNRFPHIRTPDQLGLKDGDEIVA 82 (89)
Q Consensus 58 fdG~~l~~~~Tp~~l~medgD~Idv 82 (89)
.||+++. ..-|.+||+|.+
T Consensus 69 vng~~i~------~~~L~~gd~i~i 87 (100)
T 3po8_A 69 VNNAPVQ------EWQLADGDVIRL 87 (100)
T ss_dssp ETTEECS------EEECCTTCEEEE
T ss_pred ECCEECc------eEECCCCCEEEE
Confidence 3566554 356899999865
No 397
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=27.54 E-value=31 Score=19.16 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=12.8
Q ss_pred ccccCCCCCCEEEEEee
Q 048514 69 PDQLGLKDGDEIVATFY 85 (89)
Q Consensus 69 p~~l~medgD~Idv~~~ 85 (89)
.+.|++..||.+++..+
T Consensus 22 ~~~lgl~~gd~v~i~~~ 38 (82)
T 1mvf_D 22 MQALNLNIDDEVKIDLV 38 (82)
T ss_dssp HHHTTCCTTCBEEEEEE
T ss_pred HHHcCCCCCCEEEEEEE
Confidence 45788888998887653
No 398
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=27.46 E-value=73 Score=17.45 Aligned_cols=54 Identities=7% Similarity=0.068 Sum_probs=35.6
Q ss_pred EEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccc--cCCCCCCEEEEEeeecC
Q 048514 27 YFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQ--LGLKDGDEIVATFYAGG 88 (89)
Q Consensus 27 ~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~--l~medgD~Idv~~~q~G 88 (89)
.-.|.+..| |++.|+.....-+.+||..+........ +-...|+.|.+.+..-|
T Consensus 38 V~~V~~~sp--------A~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g 93 (97)
T 2w4f_A 38 ISRVSEEGP--------AARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRER 93 (97)
T ss_dssp EEEECTTSH--------HHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEECCS
T ss_pred EEEECCCCh--------HHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhCCCCeEEEEEEeCC
Confidence 345566554 5667899999999999999986443221 11136888888776543
No 399
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Probab=27.40 E-value=48 Score=19.60 Aligned_cols=20 Identities=10% Similarity=-0.016 Sum_probs=17.0
Q ss_pred CCCccccCCCCCCEEEEEee
Q 048514 66 IRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 66 ~~Tp~~l~medgD~Idv~~~ 85 (89)
...+.+|.+.-||+|.|...
T Consensus 33 a~~~~ELsf~~GDiI~Vl~k 52 (108)
T 1i1j_A 33 APDCRFLTIHRGQVVYVFSK 52 (108)
T ss_dssp CSSTTBCCBCTTCEEEEEEE
T ss_pred CCCCCccccCCCCEEEEEEe
Confidence 34678999999999999876
No 400
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=27.38 E-value=92 Score=17.77 Aligned_cols=65 Identities=14% Similarity=0.186 Sum_probs=45.1
Q ss_pred EEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEE-E----CCe--ecCCCCCccccCCCCCCEEEEE
Q 048514 16 LVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFL-I----NGN--RFPHIRTPDQLGLKDGDEIVAT 83 (89)
Q Consensus 16 i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~-f----dG~--~l~~~~Tp~~l~medgD~Idv~ 83 (89)
|++.-++++.-.+.|++..++..-..+-.++.|+.++.+..+ . .|. +|.=+.....|. |++|-|-
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~~~~~~~~~~~~~i~WdtD~~~L~---~eEl~Ve 75 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLHEHKGKKARLDWNTDAASLI---GEELQVD 75 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEEEEGGGSSEEEEECTTSBGGGGT---TCEEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEEEeccCCCCCccccchhHhhhhcc---CceEEEE
Confidence 445557888889999999999999999999999988877444 3 353 444333344443 5556553
No 401
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=27.27 E-value=74 Score=20.43 Aligned_cols=51 Identities=8% Similarity=0.007 Sum_probs=35.2
Q ss_pred cCCCEEEEEEeccchHHHHHHHHHhhhCCCC-------CcEeEEECCeecCCCCCccc
Q 048514 21 QDNDPLYFEFRRDWEIKKLLITYCEKKDAQY-------GTFPFLINGNRFPHIRTPDQ 71 (89)
Q Consensus 21 ~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~-------~~~rF~fdG~~l~~~~Tp~~ 71 (89)
.||+.+.+.+.+.++|-.+........|... .+.....||+.+..-.||..
T Consensus 10 vNG~~~~~~v~~~~tLLd~LR~~lgl~g~k~gC~~G~CGaCtV~vdG~~v~SC~~~~~ 67 (166)
T 1n62_A 10 INGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDLDGMSVKSCTMFAV 67 (166)
T ss_dssp ETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEETTEEEEGGGSBGG
T ss_pred ECCEEEEEecCCCCcHHHHHHHcCCCCccccCCCCCCCCCCEEEECCcEEechhhhHH
Confidence 3899999999999988776654322222221 24568889999998888874
No 402
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=26.79 E-value=1.1e+02 Score=18.28 Aligned_cols=65 Identities=9% Similarity=-0.077 Sum_probs=44.7
Q ss_pred EEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEEC----CeecCCCCCccccCCCCCCEEEE
Q 048514 15 NLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLIN----GNRFPHIRTPDQLGLKDGDEIVA 82 (89)
Q Consensus 15 ~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fd----G~~l~~~~Tp~~l~medgD~Idv 82 (89)
.|++.-++++.-.+.|++..++..-..+-.++.|+.++.+..+-. +.+|+=+.....|. |++|.|
T Consensus 15 ~irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~~~~~~~~I~WdtDi~~L~---geEL~V 83 (96)
T 3ny5_A 15 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRIQDGEKKPIGWDTDISWLT---GEELHV 83 (96)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEECC---CEEECTTBBGGGGT---TCEEEE
T ss_pred EEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCChHHeEEEEccCCCcCcccccccchhcc---cceEEe
Confidence 345555788888999999999999988889999998888755543 34444333333332 555544
No 403
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=26.78 E-value=50 Score=18.53 Aligned_cols=18 Identities=22% Similarity=0.421 Sum_probs=13.2
Q ss_pred CCCccccCCCCCCEEEEE
Q 048514 66 IRTPDQLGLKDGDEIVAT 83 (89)
Q Consensus 66 ~~Tp~~l~medgD~Idv~ 83 (89)
..+|++.||..||+|-.+
T Consensus 10 ~~spA~~GL~~GD~I~~I 27 (91)
T 2kjp_A 10 ENMPAKGKIEVGDKIISA 27 (91)
T ss_dssp CSSCCSSCCCSSCEEEEE
T ss_pred CCChHHHcCCCCCEEEEE
Confidence 345665699999998654
No 404
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}
Probab=26.70 E-value=61 Score=19.34 Aligned_cols=20 Identities=25% Similarity=0.194 Sum_probs=16.8
Q ss_pred CCccccCCCCCCEEEEEeee
Q 048514 67 RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~q 86 (89)
+.+.+|.++.||+|.|..+.
T Consensus 71 ~~~~eLsf~~Gd~i~vl~~~ 90 (119)
T 2rqr_A 71 SGAPQLSLQIGDVVRIQETC 90 (119)
T ss_dssp CSTTBCCBCTTCEEEEEEEE
T ss_pred CCCCcccCcCCCEEEEEEcC
Confidence 46789999999999997653
No 405
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=26.69 E-value=57 Score=19.45 Aligned_cols=23 Identities=4% Similarity=0.073 Sum_probs=17.3
Q ss_pred cEEEEEEecCCCEEEEEEeccch
Q 048514 13 FINLVVKGQDNDPLYFEFRRDWE 35 (89)
Q Consensus 13 ~I~i~v~~~~~~~~~f~i~~~t~ 35 (89)
.-.+++.....+.+.|+||-+.+
T Consensus 18 ~~~l~L~N~t~~~vaFKVKtT~p 40 (109)
T 1row_A 18 SSTHKLVNGGAEKIVFKIKSSNN 40 (109)
T ss_dssp EEEEEEEECSSSCEEEEEEESCS
T ss_pred eEEEEEEcCCCCeEEEEEEeCCC
Confidence 46677777777788888887765
No 406
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick filament, immune system, cell adhesion; NMR {Mus musculus}
Probab=26.51 E-value=93 Score=19.76 Aligned_cols=36 Identities=6% Similarity=-0.084 Sum_probs=21.3
Q ss_pred CCCcEeEEECCeecCCCCCccccCCCCCCEEEEEee
Q 048514 50 QYGTFPFLINGNRFPHIRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 50 ~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~ 85 (89)
+..+++|+|+.+.|....+-.---=...-+|+++++
T Consensus 66 ~~a~~~~ifNdkei~~~~~~ki~fD~~tGiIEmime 101 (142)
T 2jtd_A 66 SNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFME 101 (142)
T ss_dssp TCCEEEEEETTEECCSSSSCCEEECSSSCCEEEEEC
T ss_pred CCceEEEEeccceeccCCCeeEeecccCChhhhhHh
Confidence 356789999999998766543222223334554443
No 407
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=26.41 E-value=35 Score=19.86 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=17.9
Q ss_pred CeecCCCCCccccCCCCCCEEEEEee
Q 048514 60 GNRFPHIRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 60 G~~l~~~~Tp~~l~medgD~Idv~~~ 85 (89)
|+-.-+.+-=+.||++.||.+++..+
T Consensus 60 GqitIPkeiR~~lgi~~Gd~l~~~~~ 85 (92)
T 2glw_A 60 GSVIIPKALRDVIGIKPGEVIEVLLL 85 (92)
T ss_dssp GEEECCHHHHHHHTCCTTCEEEEEEE
T ss_pred ceEECcHHHHHHcCCCCCCEEEEEEe
Confidence 33344444445789999999998764
No 408
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=26.24 E-value=36 Score=20.30 Aligned_cols=23 Identities=9% Similarity=0.062 Sum_probs=16.5
Q ss_pred CCeecCCCCCccccCCCCCCEEEEEe
Q 048514 59 NGNRFPHIRTPDQLGLKDGDEIVATF 84 (89)
Q Consensus 59 dG~~l~~~~Tp~~l~medgD~Idv~~ 84 (89)
+|.+|..+.. ..|.+||+|++..
T Consensus 69 ng~~l~k~~~---~~L~~GD~l~Ll~ 91 (102)
T 3kt9_A 69 DSVVIGKDQE---VKLQPGQVLHMVN 91 (102)
T ss_dssp TTEECCBTCE---EEECTTCCEEEET
T ss_pred CCEEcCCCCe---EEeCCCCEEEEcc
Confidence 6777766543 4589999998754
No 409
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=26.01 E-value=24 Score=18.88 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=15.0
Q ss_pred CCccccCCCCCCEEEEEe
Q 048514 67 RTPDQLGLKDGDEIVATF 84 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~ 84 (89)
..+.+|.++.||+|.|..
T Consensus 22 ~~~~eLsf~~Gd~i~v~~ 39 (72)
T 1ugv_A 22 EHDSELSFTAGTVFDNVH 39 (72)
T ss_dssp CSSSBCCBCTTCEEBSCC
T ss_pred cCCCEeCCcCCCEEEEEE
Confidence 456889999999998765
No 410
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=25.94 E-value=50 Score=25.11 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=19.2
Q ss_pred CCCccccCCCCCCEEEEEeeecCC
Q 048514 66 IRTPDQLGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 66 ~~Tp~~l~medgD~Idv~~~q~GG 89 (89)
-+.+.+|.++.||+|.|....-+|
T Consensus 453 a~~~dELs~~~GD~i~v~~~~~~g 476 (526)
T 2de0_X 453 PRTADEIPMEPGDIIGVAGNHWDG 476 (526)
T ss_dssp CSSTTBCCBCTTCEEEEEEECSSS
T ss_pred CCCCCcCCcCCCCEEEEccccCCC
Confidence 457889999999999998665443
No 411
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}
Probab=25.79 E-value=62 Score=19.95 Aligned_cols=19 Identities=37% Similarity=0.421 Sum_probs=16.3
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.+..||+|.|...
T Consensus 17 ~~~~ELsf~~Gd~i~Vl~~ 35 (142)
T 2kbt_A 17 RDRSELSLKEGDIIKILNK 35 (142)
T ss_dssp SSSSBCCCCTTCEEEEEEC
T ss_pred CCCCcCCCCCCCEEEEEEe
Confidence 4678999999999999865
No 412
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=25.74 E-value=33 Score=21.32 Aligned_cols=21 Identities=52% Similarity=0.702 Sum_probs=13.5
Q ss_pred ECCeecCCCCCccccCCCCCCEEEE
Q 048514 58 INGNRFPHIRTPDQLGLKDGDEIVA 82 (89)
Q Consensus 58 fdG~~l~~~~Tp~~l~medgD~Idv 82 (89)
.||.+|... ..-|.+||+|.+
T Consensus 91 VNg~~i~~~----~~~L~~GD~I~l 111 (151)
T 2jqj_A 91 INGNRLVKK----DYILKNGDRIVF 111 (151)
T ss_dssp ETTEECCSS----CEEECSSEEEEE
T ss_pred ECCEEcCCC----ceECCCCCEEEE
Confidence 356666543 356788998865
No 413
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=25.64 E-value=53 Score=19.69 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=16.7
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccc
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDW 34 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t 34 (89)
.+..+.|+| .|..++|+|.++.
T Consensus 41 ~~~F~~isV---~g~aVTFrV~~N~ 62 (99)
T 4hti_A 41 SSAFADVEV---LGPAVTFKVSANV 62 (99)
T ss_dssp GGGEEEEEE---ETTEEEEEECCCT
T ss_pred hhheeeeee---cCceEEEEeccCC
Confidence 445677777 4688999998874
No 414
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=25.61 E-value=65 Score=17.36 Aligned_cols=45 Identities=9% Similarity=0.061 Sum_probs=28.8
Q ss_pred HhhhCCCCCcEeEEECCeecCCCC--CccccCCCCCCEEEEEeeecC
Q 048514 44 CEKKDAQYGTFPFLINGNRFPHIR--TPDQLGLKDGDEIVATFYAGG 88 (89)
Q Consensus 44 ~~~~g~~~~~~rF~fdG~~l~~~~--Tp~~l~medgD~Idv~~~q~G 88 (89)
|++.|+.....-+.+||..+.... ....+=-..++.+.+.+...|
T Consensus 40 A~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g 86 (88)
T 2uzc_A 40 AAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQRES 86 (88)
T ss_dssp HHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECCC
T ss_pred HHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCC
Confidence 556689899999999999998652 111111123777777665433
No 415
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Probab=25.56 E-value=14 Score=19.79 Aligned_cols=19 Identities=16% Similarity=0.074 Sum_probs=15.4
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.+..||+|.|...
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~ 36 (71)
T 1hsq_A 18 QREDELTFIKSAIIQNVEK 36 (71)
T ss_dssp SSSSSCCCCTTCCCBSCCC
T ss_pred CCCCccCCCCCCEEEEEEe
Confidence 4677899999999988654
No 416
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A
Probab=25.33 E-value=58 Score=18.11 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=16.2
Q ss_pred CCcc-ccCCCCCCEEEEEeee
Q 048514 67 RTPD-QLGLKDGDEIVATFYA 86 (89)
Q Consensus 67 ~Tp~-~l~medgD~Idv~~~q 86 (89)
..+. +|.+..||+|.|....
T Consensus 26 ~~~~~eLsf~~Gd~i~v~~~~ 46 (92)
T 1jqq_A 26 ENPEMEVALKKGDLMAILSKK 46 (92)
T ss_dssp SSTTTBCCBCTTCEEEEEEEE
T ss_pred CCCCCCcCCCCCCEEEEEECC
Confidence 3456 8999999999998764
No 417
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=25.21 E-value=76 Score=18.18 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=17.3
Q ss_pred cEEEEEEecCCCEEEEEEe--ccchHHHHHH
Q 048514 13 FINLVVKGQDNDPLYFEFR--RDWEIKKLLI 41 (89)
Q Consensus 13 ~I~i~v~~~~~~~~~f~i~--~~t~l~kL~~ 41 (89)
.|+|+++ .+|.++.+.|+ ....|.+-..
T Consensus 7 ditikiq-rdgqeieidirvstgkeleralq 36 (96)
T 2jvf_A 7 DITIKIQ-RDGQEIEIDIRVSTGKELERALQ 36 (96)
T ss_dssp EEEEEEE-ETTEEEEEEEECCSSSHHHHHHH
T ss_pred EEEEEEe-eCCeEEEEEEEEcccHHHHHHHH
Confidence 5788887 48887765554 4445554443
No 418
>3qoq_A Alginate and motility regulator Z; protein-DNA complex, ribbon-helix-helix; HET: DNA; 3.10A {Pseudomonas aeruginosa}
Probab=25.18 E-value=63 Score=17.94 Aligned_cols=29 Identities=7% Similarity=0.060 Sum_probs=25.0
Q ss_pred EEEEEEeccchHHHHHHHHHhhhCCCCCc
Q 048514 25 PLYFEFRRDWEIKKLLITYCEKKDAQYGT 53 (89)
Q Consensus 25 ~~~f~i~~~t~l~kL~~~y~~~~g~~~~~ 53 (89)
.-.|.++-...|..-....|+..|.+.|+
T Consensus 19 ~~kf~LRlP~eL~~~L~~~A~~~grSlNa 47 (69)
T 3qoq_A 19 ADKFVVRLPEGMREQIAEVARSHHRSMNS 47 (69)
T ss_dssp SEEEEEECCTTHHHHHHHHHHHTTCCHHH
T ss_pred CCceEEECCHHHHHHHHHHHHHhCCCHHH
Confidence 34688888899999999999999998765
No 419
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=25.11 E-value=73 Score=15.87 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=16.6
Q ss_pred HHHHHHHHhhhCCCCCcEeEEEC
Q 048514 37 KKLLITYCEKKDAQYGTFPFLIN 59 (89)
Q Consensus 37 ~kL~~~y~~~~g~~~~~~rF~fd 59 (89)
..|.+++++..|++.+.+...|.
T Consensus 21 ~~i~~~l~~~lg~~~~~v~V~i~ 43 (61)
T 2opa_A 21 EKVTEAVKETTGASEEKIVVFIE 43 (61)
T ss_dssp HHHHHHHHHHHCCCGGGCEEEEE
T ss_pred HHHHHHHHHHhCcCcCeEEEEEE
Confidence 34667778889999887766553
No 420
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=25.06 E-value=35 Score=20.19 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=28.5
Q ss_pred EEE-eccchHHHHHHHHHhhhCCC-CCcEeEE--------ECCeecCCCCCccccCCCCCCEEEEEee
Q 048514 28 FEF-RRDWEIKKLLITYCEKKDAQ-YGTFPFL--------INGNRFPHIRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 28 f~i-~~~t~l~kL~~~y~~~~g~~-~~~~rF~--------fdG~~l~~~~Tp~~l~medgD~Idv~~~ 85 (89)
+-+ ++.++... ||.+.--+ .+.+++- |+|+++. .+..|+|||+|.++..
T Consensus 29 viL~~~GsTv~D----fa~~IH~di~~~fkyA~VwG~saK~~~qrVg-----ldh~L~d~DVV~Iv~~ 87 (93)
T 2eki_A 29 VVLPYSRTTVED----FCMKIHKNLIKEFKYALVWGLSVKHNPQKVG-----KDHTLEDEDVIQIVKK 87 (93)
T ss_dssp EEEETTSCCHHH----HHHHHCTTCTTTEEEEEEBSTTSSSSSEEEC-----SSCCCCSSEEECEEEC
T ss_pred EEEecCCCCHHH----HHHHHHHHHHhhccEEEEecccccCCCEECC-----CCcEecCCCEEEEEeC
Confidence 445 55565554 44433333 2444442 2566654 5667889999988765
No 421
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=24.99 E-value=73 Score=17.77 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=15.1
Q ss_pred cCCCCCccccCCCCCCEEEEE
Q 048514 63 FPHIRTPDQLGLKDGDEIVAT 83 (89)
Q Consensus 63 l~~~~Tp~~l~medgD~Idv~ 83 (89)
+.+..-++..||..||+|..+
T Consensus 37 V~~~spA~~aGl~~GD~I~~i 57 (102)
T 2d90_A 37 IEPGSPAEAAGLKNNDLVVAV 57 (102)
T ss_dssp CCTTSTTTTTTCCTTCEEEEE
T ss_pred ECCCCHHHHcCCCCCCEEEEE
Confidence 445555667889999998654
No 422
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=24.91 E-value=68 Score=19.22 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=18.4
Q ss_pred cEEEEEEecCCCEEEEEEeccch
Q 048514 13 FINLVVKGQDNDPLYFEFRRDWE 35 (89)
Q Consensus 13 ~I~i~v~~~~~~~~~f~i~~~t~ 35 (89)
.-.|++.......+.|+|+.+.+
T Consensus 30 ~~~l~L~N~s~~~vaFKVKTT~p 52 (128)
T 1z9l_A 30 TTNLKLQNPSDRKVCFKVKTTAP 52 (128)
T ss_dssp EEEEEEECCSSSCEEEEEEESCG
T ss_pred EEEEEEECCCCCeEEEEEECCCC
Confidence 45677777777889999998877
No 423
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=24.89 E-value=74 Score=17.51 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=15.6
Q ss_pred cCCCCCccccCCCCCCEEEEE
Q 048514 63 FPHIRTPDQLGLKDGDEIVAT 83 (89)
Q Consensus 63 l~~~~Tp~~l~medgD~Idv~ 83 (89)
+.++.-++..||..||+|..+
T Consensus 36 V~~~spA~~aGL~~GD~I~~i 56 (93)
T 2dls_A 36 VRPGGAAMKAGVKEGDRIIKV 56 (93)
T ss_dssp ECSSSTTTTTTCCSSCEEEEE
T ss_pred ECCCCHHHHcCCCCCCEEEEE
Confidence 455666677889999998653
No 424
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=24.42 E-value=76 Score=15.82 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=15.6
Q ss_pred HHHHHHHHhhhCCCCCcEeEEE
Q 048514 37 KKLLITYCEKKDAQYGTFPFLI 58 (89)
Q Consensus 37 ~kL~~~y~~~~g~~~~~~rF~f 58 (89)
..|.+++++..|++.+.+...|
T Consensus 21 ~~i~~~l~~~lg~p~~~v~v~i 42 (62)
T 1otf_A 21 RQVSEAMANSLDAPLERVRVLI 42 (62)
T ss_dssp HHHHHHHHHHHTCCGGGCEEEE
T ss_pred HHHHHHHHHHhCcCcccEEEEE
Confidence 3466777888999887765544
No 425
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=24.25 E-value=1.1e+02 Score=19.42 Aligned_cols=52 Identities=8% Similarity=-0.049 Sum_probs=34.8
Q ss_pred cCCCEEEEEEeccchHHHHHHHHHhhhCCCC-------CcEeEEECCeecCCCCCcccc
Q 048514 21 QDNDPLYFEFRRDWEIKKLLITYCEKKDAQY-------GTFPFLINGNRFPHIRTPDQL 72 (89)
Q Consensus 21 ~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~-------~~~rF~fdG~~l~~~~Tp~~l 72 (89)
.||+.+.+.+.+.++|...........+... .+.....||+.+..-.||..-
T Consensus 9 vNG~~~~v~~~~~~tLL~~Lr~~~gl~g~k~gC~~G~CGaCtV~vdG~~v~sC~~~~~~ 67 (161)
T 1rm6_C 9 LNGRAREDLVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLVDDRPRLACSTLAHQ 67 (161)
T ss_dssp ETTEEEEEEEETTCBHHHHHHHTTCCTTSCCCSSSSSSCTTEEEETTEEEEGGGSBGGG
T ss_pred ECCEEEEEecCCcCcHHHHHHHcCCCcccccCCCCCCCCCCEEEECCcEEechHHHHHH
Confidence 4899888889999888776654321122221 234577899999888887754
No 426
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=24.18 E-value=93 Score=16.81 Aligned_cols=52 Identities=8% Similarity=-0.081 Sum_probs=32.7
Q ss_pred EEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCC--CCccccCCCCCCEEEEEeee
Q 048514 27 YFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHI--RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 27 ~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~--~Tp~~l~medgD~Idv~~~q 86 (89)
.-.|.+..+ |++.|+.....-+.+||..+... .....+=-..++.|.+.+..
T Consensus 32 V~~V~~~sp--------A~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r 85 (90)
T 2he4_A 32 IRSVDPGSP--------AARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 85 (90)
T ss_dssp EEEECTTSH--------HHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTSSSEEEEEEEC
T ss_pred EEEECCCCh--------HHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEc
Confidence 345555554 56678989999999999999864 22222111236777766554
No 427
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=24.04 E-value=1.6e+02 Score=19.40 Aligned_cols=42 Identities=12% Similarity=0.060 Sum_probs=35.5
Q ss_pred CCCcEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCC
Q 048514 10 DQHFINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQY 51 (89)
Q Consensus 10 ~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~ 51 (89)
....+.++|-..||....+.|.++++...|.+..+++.+++.
T Consensus 31 ~~~k~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~ 72 (291)
T 3tca_A 31 KVKKLVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDC 72 (291)
T ss_dssp -CCEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCC
T ss_pred hccceEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCC
Confidence 345678888888999889999999999999999999988754
No 428
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=23.97 E-value=1.3e+02 Score=18.23 Aligned_cols=34 Identities=6% Similarity=0.033 Sum_probs=26.0
Q ss_pred CCCCCCcEEEEEEecCCCEEEEEEeccchHHHHH
Q 048514 7 NIPDQHFINLVVKGQDNDPLYFEFRRDWEIKKLL 40 (89)
Q Consensus 7 ~~~~~~~I~i~v~~~~~~~~~f~i~~~t~l~kL~ 40 (89)
+++...-.+|.+.+.+|....|.+....+|....
T Consensus 15 ~~~~~~M~~Vt~~~~~G~~~~v~~~~G~tLL~aa 48 (126)
T 3hui_A 15 VPRGSHMAKINFVDHTGETRTVEVEEGATVMEAA 48 (126)
T ss_dssp CCTTCSEEEEEEECTTSCEEEEEEETTSBHHHHH
T ss_pred cCCCCCceEEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 4456667789998888988889999888776543
No 429
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=23.96 E-value=60 Score=17.57 Aligned_cols=17 Identities=47% Similarity=0.763 Sum_probs=11.9
Q ss_pred CCccccCCCCCCEEEEE
Q 048514 67 RTPDQLGLKDGDEIVAT 83 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~ 83 (89)
.+|++.||..||+|-.+
T Consensus 36 ~spA~aGl~~GD~I~~v 52 (88)
T 3bpu_A 36 DSPRSRGLKEGDLIVEV 52 (88)
T ss_dssp C--CCTTCCTTCEEEEE
T ss_pred CChhHhCCCCCCEEEEE
Confidence 45666899999998643
No 430
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=23.65 E-value=45 Score=18.14 Aligned_cols=21 Identities=24% Similarity=0.183 Sum_probs=14.2
Q ss_pred cCCCCCccccCCCCCCEEEEE
Q 048514 63 FPHIRTPDQLGLKDGDEIVAT 83 (89)
Q Consensus 63 l~~~~Tp~~l~medgD~Idv~ 83 (89)
+.+..-++..||..||+|-.+
T Consensus 35 V~~~spA~~aGl~~GD~I~~i 55 (90)
T 2eaq_A 35 VEAGSPAEFSQLQVDDEIIAI 55 (90)
T ss_dssp ECTTSHHHHTTCCTTCEEEEE
T ss_pred ECCCChHHHcCCCCCCEEEEE
Confidence 344444556789999998653
No 431
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=23.63 E-value=47 Score=16.59 Aligned_cols=26 Identities=8% Similarity=0.012 Sum_probs=20.5
Q ss_pred EEEEeccchHHHHHHHHHhhhCCCCC
Q 048514 27 YFEFRRDWEIKKLLITYCEKKDAQYG 52 (89)
Q Consensus 27 ~f~i~~~t~l~kL~~~y~~~~g~~~~ 52 (89)
.+.|+-...+..-++.+|+..|.+.+
T Consensus 5 ~~sirl~~~l~~~l~~lA~~~~rs~s 30 (52)
T 2gpe_A 5 TMGVKLDDATRERIKSAATRIDRTPH 30 (52)
T ss_dssp EEEEEEEHHHHHHHHHHHHHTTCCHH
T ss_pred eEEEECCHHHHHHHHHHHHHHCcCHH
Confidence 45566667899999999999998754
No 432
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=23.62 E-value=59 Score=17.75 Aligned_cols=43 Identities=7% Similarity=0.041 Sum_probs=25.2
Q ss_pred HHhhhCCCCCcEeEEECCeecCCCCCcccc----CCCCCCEEEEEeeec
Q 048514 43 YCEKKDAQYGTFPFLINGNRFPHIRTPDQL----GLKDGDEIVATFYAG 87 (89)
Q Consensus 43 y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l----~medgD~Idv~~~q~ 87 (89)
-|++.|+.....-+.+||..+... +..++ .-. |+.|.+.+...
T Consensus 39 pA~~aGl~~GD~I~~ing~~v~~~-~~~~~~~~l~~~-g~~v~l~v~r~ 85 (91)
T 2vsp_A 39 PADLAGLEDEDVIIEVNGVNVLDE-PYEKVVDRIQSS-GKNVTLLVCGK 85 (91)
T ss_dssp HHHHTTCCTTCEEEEETTEECTTS-CHHHHHHHHTTS-CSEEEEEEEC-
T ss_pred hHHHcCCCCCCEEEEECCEECCCC-CHHHHHHHHHcC-CCEEEEEEEeC
Confidence 356677878888888888888622 22221 112 66666665543
No 433
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A
Probab=23.57 E-value=31 Score=20.55 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=16.8
Q ss_pred CCCccccCCCCCCEEEEEeee
Q 048514 66 IRTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 66 ~~Tp~~l~medgD~Idv~~~q 86 (89)
.+.+.+|.+..||+|.|..+.
T Consensus 16 a~~~~ELsf~~Gd~i~vl~~~ 36 (108)
T 2rqv_A 16 AEKADELTTYVGENLFICAHH 36 (108)
T ss_dssp CCSSSBCCCCSSEEECCCCEE
T ss_pred CCCCCcCCcCCCCEEEEeEec
Confidence 357889999999999886543
No 434
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=23.52 E-value=82 Score=16.37 Aligned_cols=24 Identities=8% Similarity=0.094 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhhCCCCCcEeEEEC
Q 048514 36 IKKLLITYCEKKDAQYGTFPFLIN 59 (89)
Q Consensus 36 l~kL~~~y~~~~g~~~~~~rF~fd 59 (89)
...|.+++++..|++.+.+...+.
T Consensus 23 ~~~lt~~l~~~lg~p~~~v~V~i~ 46 (67)
T 3m21_A 23 IEGVSDLMVKVLNKNKASIVVIID 46 (67)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEEEE
T ss_pred HHHHHHHHHHHHCcCcccEEEEEE
Confidence 344667778899999887766654
No 435
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=23.35 E-value=32 Score=20.98 Aligned_cols=11 Identities=45% Similarity=0.591 Sum_probs=8.8
Q ss_pred cCCCCCCEEEE
Q 048514 72 LGLKDGDEIVA 82 (89)
Q Consensus 72 l~medgD~Idv 82 (89)
.-|.+||+|.+
T Consensus 94 ~~L~~GD~I~i 104 (131)
T 3hx1_A 94 HIIQTGDEIVM 104 (131)
T ss_dssp EECCTTCEEEC
T ss_pred EECCCCCEEEE
Confidence 67899999854
No 436
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.35 E-value=1.2e+02 Score=17.75 Aligned_cols=55 Identities=11% Similarity=0.050 Sum_probs=34.9
Q ss_pred EEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEE--ECCeecCCCCCcccc
Q 048514 16 LVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFL--INGNRFPHIRTPDQL 72 (89)
Q Consensus 16 i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~--fdG~~l~~~~Tp~~l 72 (89)
.+|.+.+ +.+.+-|-. ..|+.|..+-|++++++...+++. -||..|..++=...|
T Consensus 12 fkV~~~~-Rs~k~GV~A-~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL 68 (91)
T 2eel_A 12 FRVSNHD-RSSRRGVMA-SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL 68 (91)
T ss_dssp EEEECTT-SCCCEEEEE-SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS
T ss_pred EEEecCC-CCeEEeEEc-CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC
Confidence 3444433 333444543 679999999999999975445444 479999765443333
No 437
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=22.85 E-value=95 Score=16.39 Aligned_cols=29 Identities=10% Similarity=0.169 Sum_probs=19.0
Q ss_pred HHHHHHHHhhhCCCCCcEe----------EEECCeecCC
Q 048514 37 KKLLITYCEKKDAQYGTFP----------FLINGNRFPH 65 (89)
Q Consensus 37 ~kL~~~y~~~~g~~~~~~r----------F~fdG~~l~~ 65 (89)
..|.+++++..|++.+.+. +.|+|..+++
T Consensus 22 ~~it~~l~~~lg~p~~~v~V~i~e~~~~~w~~gG~~~~e 60 (72)
T 3mb2_A 22 RALSAAAAAAFDVPLAEVRLIIQEVPPTHWTVGGISMAE 60 (72)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEEEEECGGGEEETTEETTC
T ss_pred HHHHHHHHHHhCCCcccEEEEEEEcCHHHeeECCEEHHH
Confidence 3456777788999987654 4455666554
No 438
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=22.82 E-value=58 Score=17.41 Aligned_cols=21 Identities=10% Similarity=0.031 Sum_probs=11.2
Q ss_pred hhhCCCCCcEeEEECCeecCC
Q 048514 45 EKKDAQYGTFPFLINGNRFPH 65 (89)
Q Consensus 45 ~~~g~~~~~~rF~fdG~~l~~ 65 (89)
++.|+.....-+..||..+..
T Consensus 37 ~~aGl~~GD~I~~ing~~v~~ 57 (83)
T 2kv8_A 37 DFVGLRAGDQILAVNEINVKK 57 (83)
T ss_dssp TTTTCCTTCEEEEETTEECSS
T ss_pred HHcCCCCCCEEEEECCEECCC
Confidence 334555555555555555554
No 439
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=22.80 E-value=77 Score=19.11 Aligned_cols=24 Identities=4% Similarity=0.119 Sum_probs=18.4
Q ss_pred CcEEEEEEecCCCEEEEEEeccch
Q 048514 12 HFINLVVKGQDNDPLYFEFRRDWE 35 (89)
Q Consensus 12 ~~I~i~v~~~~~~~~~f~i~~~t~ 35 (89)
..-.|++.....+.+-|+|+.+.+
T Consensus 27 ~~~~l~l~N~s~~~vaFKVKTT~p 50 (126)
T 1msp_A 27 HTYHIKITNAGGRRIGWAIKTTNM 50 (126)
T ss_dssp CCEEEEEEECSSSCEEEEEEESCT
T ss_pred eEEEEEEECCCCCeEEEEEEcCCC
Confidence 456777777777889999997765
No 440
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A
Probab=22.61 E-value=63 Score=21.47 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=18.3
Q ss_pred CCCccccCCCCCCEEEEEeeecC
Q 048514 66 IRTPDQLGLKDGDEIVATFYAGG 88 (89)
Q Consensus 66 ~~Tp~~l~medgD~Idv~~~q~G 88 (89)
...+.+|.+..||+|.|.-..-+
T Consensus 13 ~~~~~el~~~~gd~i~v~~~~~~ 35 (283)
T 3jv3_A 13 AQNDDELAFSKGQIINVLNKEDP 35 (283)
T ss_dssp CSSTTBCCBCTTCEEEEEECCST
T ss_pred CCCCCcCCCCCCCEEEEEecCCC
Confidence 34688999999999999866543
No 441
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=22.42 E-value=66 Score=17.17 Aligned_cols=43 Identities=9% Similarity=0.067 Sum_probs=25.6
Q ss_pred HhhhCCCCCcEeEEECCeecCCC--CCccccCCCCCCEEEEEeee
Q 048514 44 CEKKDAQYGTFPFLINGNRFPHI--RTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 44 ~~~~g~~~~~~rF~fdG~~l~~~--~Tp~~l~medgD~Idv~~~q 86 (89)
|++-|+.....-+.+||..+... .....+--..++.+.+.+..
T Consensus 38 A~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R 82 (85)
T 1rgw_A 38 AAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQK 82 (85)
T ss_dssp HHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEEEES
T ss_pred HHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHcCCCeEEEEEEe
Confidence 33468888888899999998764 11111111235556665543
No 442
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.11 E-value=83 Score=17.75 Aligned_cols=19 Identities=21% Similarity=0.207 Sum_probs=15.6
Q ss_pred CccccCCCCCCEEEEEeee
Q 048514 68 TPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 68 Tp~~l~medgD~Idv~~~q 86 (89)
.+.+|.+..||+|.|.-+.
T Consensus 38 ~~~eLsf~~Gd~i~vl~~~ 56 (97)
T 2csq_A 38 AEEELPFKEGQIIKVYGDK 56 (97)
T ss_dssp HTTBCCBCTTCEEEEEEEE
T ss_pred CCCccCCCCCCEEEEEEec
Confidence 4669999999999998543
No 443
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Probab=22.07 E-value=65 Score=20.64 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=17.3
Q ss_pred CCCccccCCCCCCEEEEEeee
Q 048514 66 IRTPDQLGLKDGDEIVATFYA 86 (89)
Q Consensus 66 ~~Tp~~l~medgD~Idv~~~q 86 (89)
...+.+|.+..||+|.|....
T Consensus 22 ~~~~~eLs~~~Gd~i~vl~~~ 42 (193)
T 1ng2_A 22 KTSGSEMALSTGDVVEVVEKS 42 (193)
T ss_dssp CSSTTCCCBCTTCEEEEEECC
T ss_pred CCCCCcCCCCCCCEEEEEEec
Confidence 346789999999999998754
No 444
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=22.02 E-value=38 Score=17.38 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=20.4
Q ss_pred EeEEECCeecCCCCCc---cccCCCCCCEEEEEee
Q 048514 54 FPFLINGNRFPHIRTP---DQLGLKDGDEIVATFY 85 (89)
Q Consensus 54 ~rF~fdG~~l~~~~Tp---~~l~medgD~Idv~~~ 85 (89)
+.+..+|..|...-|. ++|+++.|+.+.+.+.
T Consensus 25 v~l~~~~~~l~a~it~~s~~~l~L~~G~~V~~~ik 59 (67)
T 1fr3_A 25 IVMDYKGTELVAAITIDSVADLDLVPGDKVTALVK 59 (67)
T ss_dssp EEEEETTEEEEEEEEHHHHHHHTCCTTCEEEEEEC
T ss_pred EEEEeCCCEEEEEeCHHHHHhCCCCCCCEEEEEEe
Confidence 4455555555444343 4688888988888764
No 445
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=21.87 E-value=72 Score=18.03 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=14.5
Q ss_pred cCCCCCCEEEEEeeecCC
Q 048514 72 LGLKDGDEIVATFYAGGA 89 (89)
Q Consensus 72 l~medgD~Idv~~~q~GG 89 (89)
-+++.||.|++.+++.+|
T Consensus 46 ~~lk~Gd~V~F~~~~~~~ 63 (82)
T 2l55_A 46 QGLKAGDRVAFSFRLDPH 63 (82)
T ss_dssp SSCSTTCEEEEEEEEETT
T ss_pred hcCCCCCEEEEEEEECCC
Confidence 468899999998887664
No 446
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=21.87 E-value=77 Score=19.60 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=18.3
Q ss_pred cEEEEEEecCCCEEEEEEeccchH
Q 048514 13 FINLVVKGQDNDPLYFEFRRDWEI 36 (89)
Q Consensus 13 ~I~i~v~~~~~~~~~f~i~~~t~l 36 (89)
.-.|++.......+.|+|+.+.+-
T Consensus 34 ~~~l~L~N~s~~~VaFKVKTT~p~ 57 (147)
T 2cri_A 34 TTNLKLQNPSDRKVCFKVKTTAPR 57 (147)
T ss_dssp CEEEEEECCSSSCEEEEEEESCTT
T ss_pred EEEEEEECCCCCcEEEEEECCCCc
Confidence 456777777778899999987763
No 447
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=21.78 E-value=51 Score=17.85 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=14.7
Q ss_pred cCCCCCccccCCCCCCEEEEE
Q 048514 63 FPHIRTPDQLGLKDGDEIVAT 83 (89)
Q Consensus 63 l~~~~Tp~~l~medgD~Idv~ 83 (89)
+.++.-++..||..||+|-.+
T Consensus 33 V~~~spA~~aGL~~GD~I~~i 53 (87)
T 2pa1_A 33 VAERGKAKDADLRPGDIIVAI 53 (87)
T ss_dssp ECSSSHHHHTTCCTTCEEEEE
T ss_pred ECCCChHHHcCCCCCCEEEEE
Confidence 445555667889999998643
No 448
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=21.72 E-value=75 Score=18.95 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=15.0
Q ss_pred EECCeecCCCCCccccCCCCCCEEEE
Q 048514 57 LINGNRFPHIRTPDQLGLKDGDEIVA 82 (89)
Q Consensus 57 ~fdG~~l~~~~Tp~~l~medgD~Idv 82 (89)
+.||.+|.... ..-|.+||+|.+
T Consensus 82 ~vNg~~l~~~~---~~~L~~Gd~I~l 104 (127)
T 1g6g_A 82 WLNGQKVEKNS---NQLLSQGDEITV 104 (127)
T ss_dssp EETTEECCTTC---CEECCTTCEEEE
T ss_pred EECCEEcCCCC---eEEcCCCCEEEE
Confidence 44677765432 356789999875
No 449
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=21.70 E-value=54 Score=18.65 Aligned_cols=45 Identities=9% Similarity=0.126 Sum_probs=29.8
Q ss_pred HhhhCCCCCcEeEEECCeecCCCCCccc--cCCCCCCEEEEEeeecC
Q 048514 44 CEKKDAQYGTFPFLINGNRFPHIRTPDQ--LGLKDGDEIVATFYAGG 88 (89)
Q Consensus 44 ~~~~g~~~~~~rF~fdG~~l~~~~Tp~~--l~medgD~Idv~~~q~G 88 (89)
|++-|+....+-+.+||..+......+- +-...|+.|.+.+..-|
T Consensus 59 A~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g 105 (110)
T 1x5q_A 59 AARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRES 105 (110)
T ss_dssp HHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEEECS
T ss_pred HHHcCCCCCCEEEEECCEECCCcCHHHHHHHhhCCCCeEEEEEEECC
Confidence 5677888899999999999976322211 11126788887766543
No 450
>1y51_A Phosphocarrier protein HPR; bacillus stearothermophilus HPR F29W mutant, transport protein; 1.65A {Geobacillus stearothermophilus} PDB: 1y50_A 1y4y_A 2nzu_L* 1rzr_T* 2nzv_L* 2oen_L* 2fep_S* 3oqm_S* 3oqn_S* 3oqo_S*
Probab=21.70 E-value=1.1e+02 Score=17.25 Aligned_cols=46 Identities=20% Similarity=0.210 Sum_probs=32.2
Q ss_pred HHHHHHHHhhhCCCCCcEeEEECCeecCCCC--CccccCCCCCCEEEEEee
Q 048514 37 KKLLITYCEKKDAQYGTFPFLINGNRFPHIR--TPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 37 ~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~--Tp~~l~medgD~Idv~~~ 85 (89)
...|-.-|.++. ..+.+.++|+.++... -.-+|+...||.|.+..+
T Consensus 19 Aa~~v~~a~~f~---s~I~i~~~~~~vdaKSim~lm~L~~~~g~~i~i~~~ 66 (88)
T 1y51_A 19 ATILVQTASKWN---SEIQLEYNGKTVNLKSIMGVMSLGIPKGATIKITAE 66 (88)
T ss_dssp HHHHHHHHHTSS---SEEEEEETTEEEETTCHHHHHHTCCCTTCEEEEEEE
T ss_pred HHHHHHHHhhCC---CeEEEEECCEEEehHhHHHHHhcCCCCCCEEEEEEe
Confidence 334444455554 5778888999888655 345889999999988754
No 451
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13
Probab=21.60 E-value=87 Score=18.94 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=17.6
Q ss_pred HhhhCCCCCcEeEEECCeecCCCCCcccc
Q 048514 44 CEKKDAQYGTFPFLINGNRFPHIRTPDQL 72 (89)
Q Consensus 44 ~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l 72 (89)
+...|+.--- .|++||+.+.+..++++|
T Consensus 142 a~~~gv~gtP-t~vvng~~~~G~~~~~~l 169 (175)
T 1z6m_A 142 ANAAHIQFVP-TIIIGEYIFDESVTEEEL 169 (175)
T ss_dssp HHHHTCCSSC-EEEETTEEECTTCCHHHH
T ss_pred HHHcCCCCcC-eEEECCEEccCCCCHHHH
Confidence 4445553211 388899999887776654
No 452
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=21.47 E-value=1.5e+02 Score=18.29 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=27.9
Q ss_pred CCCEEEEEEeccchHHHHHHHHHhhhCCCCC
Q 048514 22 DNDPLYFEFRRDWEIKKLLITYCEKKDAQYG 52 (89)
Q Consensus 22 ~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~ 52 (89)
.|+.+.+++.+...+..=...||++.++...
T Consensus 14 ~gr~~~lrl~~Gedl~~~l~~~~~~~~i~~a 44 (149)
T 3htn_A 14 IGNKYIVSINNHTEIVKALNAFCKEKGILSG 44 (149)
T ss_dssp ETTEEEEEECTTCBHHHHHHHHHHHHTCCSE
T ss_pred cCCEEEEEECCCChHHHHHHHHHHHcCCcEE
Confidence 5788999999999999999999999998743
No 453
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=21.45 E-value=52 Score=21.33 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=15.8
Q ss_pred ECCeecCCCCCccccCCCCCCEEEEEee
Q 048514 58 INGNRFPHIRTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 58 fdG~~l~~~~Tp~~l~medgD~Idv~~~ 85 (89)
.||.+|... ...-|.+||+|.+...
T Consensus 111 VNg~ri~~~---~~~~L~~GD~I~l~~d 135 (182)
T 1qu5_A 111 LNNNRMIQG---TKFLLQDGDEIKIIWD 135 (182)
T ss_dssp ETTEECCSS---EEEECCTTBCCEEEEE
T ss_pred ECCEEcCCC---cceEcCCCCEEEEEEc
Confidence 456666542 1356889999988443
No 454
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=21.08 E-value=55 Score=17.78 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=13.6
Q ss_pred CCCCCccccCCCCCCEEEEE
Q 048514 64 PHIRTPDQLGLKDGDEIVAT 83 (89)
Q Consensus 64 ~~~~Tp~~l~medgD~Idv~ 83 (89)
.+..-++..||..||+|-.+
T Consensus 35 ~~~spA~~aGl~~GD~I~~i 54 (89)
T 2q3g_A 35 TPGGKAAQAGVAVGDWVLSI 54 (89)
T ss_dssp CTTSHHHHTTCCTTCEEEEE
T ss_pred CCCCHHHHcCCCCCCEEEEE
Confidence 34444556789999988643
No 455
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=21.08 E-value=98 Score=17.58 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=15.0
Q ss_pred cCCCCCccccCCCCCCEEEEE
Q 048514 63 FPHIRTPDQLGLKDGDEIVAT 83 (89)
Q Consensus 63 l~~~~Tp~~l~medgD~Idv~ 83 (89)
+.+..-++..||..||+|-.+
T Consensus 48 V~~~s~A~~aGL~~GD~Il~v 68 (114)
T 1x5n_A 48 VKPGSLSAEVGLEIGDQIVEV 68 (114)
T ss_dssp ECTTSTTTTTTCCTTCEEEEE
T ss_pred ECCCCHHHHcCCCCCCEEEEE
Confidence 345555667799999998654
No 456
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A
Probab=21.02 E-value=13 Score=20.23 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=14.7
Q ss_pred CCccccCCCCCCEEEEEee
Q 048514 67 RTPDQLGLKDGDEIVATFY 85 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~~ 85 (89)
..+.+|.+..||+|.|...
T Consensus 32 ~~~~eLs~~~Gd~i~v~~~ 50 (77)
T 1awj_A 32 NDPQELALRCDEEYYLLDS 50 (77)
T ss_dssp CCTTSCCBCSSSCCSCCCT
T ss_pred CCcCCcCCCCCCEEEEEEe
Confidence 3567899999999887644
No 457
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=20.98 E-value=55 Score=19.55 Aligned_cols=13 Identities=38% Similarity=0.532 Sum_probs=10.7
Q ss_pred CCCCCCEEEEEee
Q 048514 73 GLKDGDEIVATFY 85 (89)
Q Consensus 73 ~medgD~Idv~~~ 85 (89)
+++.||+|+++..
T Consensus 81 dik~GD~Ie~ye~ 93 (99)
T 1d1n_A 81 DIKEGDVIEAYVM 93 (99)
T ss_dssp SCSSCSEEEEECC
T ss_pred CCCCCCEEEEEEE
Confidence 7788999999853
No 458
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=20.91 E-value=90 Score=15.99 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=23.0
Q ss_pred EEEEeccchHHHHHHHHHhhhCCCCCc
Q 048514 27 YFEFRRDWEIKKLLITYCEKKDAQYGT 53 (89)
Q Consensus 27 ~f~i~~~t~l~kL~~~y~~~~g~~~~~ 53 (89)
.|.++-...|..-....|+..|.+.|.
T Consensus 9 ~~~lRlp~eL~~~l~~~A~~~grS~N~ 35 (53)
T 1baz_A 9 QVNLRWPREVLDLVRKVAEENGRSVNS 35 (53)
T ss_dssp EEEEECCHHHHHHHHHHHHHTTCCHHH
T ss_pred eeEEECCHHHHHHHHHHHHHcCCCHHH
Confidence 577778889999999999999998765
No 459
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=20.84 E-value=85 Score=19.65 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=18.4
Q ss_pred cEEEEEEecCCCEEEEEEeccch
Q 048514 13 FINLVVKGQDNDPLYFEFRRDWE 35 (89)
Q Consensus 13 ~I~i~v~~~~~~~~~f~i~~~t~ 35 (89)
.-.|++.......+.|+|+.+.+
T Consensus 38 ~~~l~L~N~s~~~VaFKVKTT~p 60 (152)
T 1wic_A 38 KTLIVLTNVTKNIVAFKVRTTAP 60 (152)
T ss_dssp CEEEEEEBCSSSCEEEEEEESCT
T ss_pred EEEEEEEcCCCCeEEEEEECCCC
Confidence 45778877777889999998876
No 460
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=20.83 E-value=1.3e+02 Score=17.24 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=21.1
Q ss_pred EEEEEecCCCEEEEEEeccchHHHHHH
Q 048514 15 NLVVKGQDNDPLYFEFRRDWEIKKLLI 41 (89)
Q Consensus 15 ~i~v~~~~~~~~~f~i~~~t~l~kL~~ 41 (89)
+|.+.+.+|....|.+....+|.....
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~ 28 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALR 28 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHH
Confidence 467778899988999999887766543
No 461
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=20.78 E-value=1e+02 Score=15.85 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=16.2
Q ss_pred HHHHHHHHhhhCCCCCcEeEEEC
Q 048514 37 KKLLITYCEKKDAQYGTFPFLIN 59 (89)
Q Consensus 37 ~kL~~~y~~~~g~~~~~~rF~fd 59 (89)
..|.+++++..|++.+.+...|.
T Consensus 21 ~~it~~~~~~lg~p~~~v~V~i~ 43 (65)
T 3ry0_A 21 EALTAAAHETLGTPVEAVRVIVE 43 (65)
T ss_dssp HHHHHHHHHHHCCCGGGCEEEEE
T ss_pred HHHHHHHHHHhCcCcccEEEEEE
Confidence 34567778889999877665553
No 462
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=20.76 E-value=1.1e+02 Score=16.51 Aligned_cols=69 Identities=14% Similarity=0.199 Sum_probs=43.1
Q ss_pred cEEEEEEecCCCEEEEEEeccchHHHHHHHHHhhhCCCCCcEeEEECCeecCCCCCccc-c-CCCCCCEEEEEeee
Q 048514 13 FINLVVKGQDNDPLYFEFRRDWEIKKLLITYCEKKDAQYGTFPFLINGNRFPHIRTPDQ-L-GLKDGDEIVATFYA 86 (89)
Q Consensus 13 ~I~i~v~~~~~~~~~f~i~~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~-l-~medgD~Idv~~~q 86 (89)
.+.+.....+|...-+.|.+..+= ..|++.|+....+-..+||+++........ + .+..|+.+.+.+..
T Consensus 6 ~~~~~p~~~~g~~~G~~V~~~~~~-----s~A~~aGl~~GD~I~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v~R 76 (87)
T 2i6v_A 6 YVRLSQVKRDDKVLGYRVSPGKDP-----VLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVER 76 (87)
T ss_dssp TEEEEEEEETTEEEEEEEEECSCH-----HHHHHTTCCTTCEEEEETTEETTCHHHHHHHHHTGGGCSEEEEEEEE
T ss_pred ccceEEEeeCCeEEEEEEEeCCCC-----CHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence 344555444565555666666652 245677999999999999999975432211 1 23467777776643
No 463
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=20.72 E-value=50 Score=18.58 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=13.7
Q ss_pred CCCCCccccCCCCCCEEEEE
Q 048514 64 PHIRTPDQLGLKDGDEIVAT 83 (89)
Q Consensus 64 ~~~~Tp~~l~medgD~Idv~ 83 (89)
.++..++..||+.||+|-.+
T Consensus 10 ~~~spA~~aGl~~GD~I~~i 29 (95)
T 3id1_A 10 AANSIAAEAQIAPGTELKAV 29 (95)
T ss_dssp CTTSHHHHTTCCTTCEEEEE
T ss_pred CCCCHHHHcCCCCCCEEEEE
Confidence 34444556799999998654
No 464
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=20.66 E-value=55 Score=20.29 Aligned_cols=12 Identities=33% Similarity=0.440 Sum_probs=8.8
Q ss_pred ccCCCCCCEEEE
Q 048514 71 QLGLKDGDEIVA 82 (89)
Q Consensus 71 ~l~medgD~Idv 82 (89)
..-|.+||+|.+
T Consensus 119 ~~~L~~GD~I~i 130 (143)
T 2kb3_A 119 AQVMQTGDEIQI 130 (143)
T ss_dssp EEECCTTEEEEE
T ss_pred eEECCCCCEEEE
Confidence 356889998865
No 465
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=20.59 E-value=57 Score=19.13 Aligned_cols=12 Identities=42% Similarity=0.570 Sum_probs=8.8
Q ss_pred ccCCCCCCEEEE
Q 048514 71 QLGLKDGDEIVA 82 (89)
Q Consensus 71 ~l~medgD~Idv 82 (89)
..-|.+||+|.+
T Consensus 90 ~~~L~~gd~i~l 101 (118)
T 1uht_A 90 SVNLGDGDVIKL 101 (118)
T ss_dssp EEECCTTEEEEE
T ss_pred eEEcCCCCEEEE
Confidence 456888998864
No 466
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=20.51 E-value=50 Score=22.20 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=15.5
Q ss_pred CCccccCCCCCCEEEEEe
Q 048514 67 RTPDQLGLKDGDEIVATF 84 (89)
Q Consensus 67 ~Tp~~l~medgD~Idv~~ 84 (89)
..+.+|.+..||+|.|..
T Consensus 154 ~~~dELSf~~GDiI~Vl~ 171 (213)
T 1mv3_A 154 TDTDELQLKAGDVVLVIP 171 (213)
T ss_dssp CSTTCCCBCSSCEEEECC
T ss_pred CCCCcCCcCCCCEEEEee
Confidence 456789999999999987
No 467
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=20.38 E-value=59 Score=17.91 Aligned_cols=44 Identities=14% Similarity=0.108 Sum_probs=29.1
Q ss_pred HhhhCCCCCcEeEEECCeecCCCCCcccc---CCCCCCEEEEEeeecC
Q 048514 44 CEKKDAQYGTFPFLINGNRFPHIRTPDQL---GLKDGDEIVATFYAGG 88 (89)
Q Consensus 44 ~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l---~medgD~Idv~~~q~G 88 (89)
|++.|+.....-+.+||..+... +..++ =-..|+.|.+.+..-|
T Consensus 43 A~~aGl~~GD~I~~ing~~v~~~-~~~~~~~~l~~~g~~v~l~v~r~~ 89 (96)
T 2v90_A 43 AKKAGMQAGDRLVAVAGESVEGL-GHEETVSRIQGQGSCVSLTVVDPE 89 (96)
T ss_dssp HHHTTCCTTEEEEEETTEECTTC-CHHHHHHHHHTTTTEEEEEEECCC
T ss_pred HHHcCCCCCCEEEEECCEECCCC-CHHHHHHHHHcCCCEEEEEEECCC
Confidence 56788999999999999999862 22221 1112777777665443
No 468
>3o6q_A Stage II sporulation protein SA; GAF domain, toxin-antitoxin, toxin - antitoxin toxin-antitoxin complex; HET: MSE; 2.50A {Bacillus subtilis}
Probab=20.34 E-value=42 Score=21.72 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=19.9
Q ss_pred chHHHHHHHHHhhhCCCCCcEeEE
Q 048514 34 WEIKKLLITYCEKKDAQYGTFPFL 57 (89)
Q Consensus 34 t~l~kL~~~y~~~~g~~~~~~rF~ 57 (89)
+-+++|...||++.+++.+-++|.
T Consensus 50 ~Gi~~lL~~yaeK~~i~asl~~fs 73 (157)
T 3o6q_A 50 EGIDKLLKTYADKMNLTASLCHYS 73 (157)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEECS
T ss_pred HHHHHHHHHHHHhcCceeeeccCC
Confidence 568999999999999987766653
No 469
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.34 E-value=51 Score=20.38 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=10.8
Q ss_pred CCCCCCEEEEEee
Q 048514 73 GLKDGDEIVATFY 85 (89)
Q Consensus 73 ~medgD~Idv~~~ 85 (89)
+++.||+|+++..
T Consensus 89 Dik~GDiIE~ye~ 101 (120)
T 2crv_A 89 EFKPGDQVICYEE 101 (120)
T ss_dssp CCCTTEEEEEECC
T ss_pred CCCCCCEEEEEEE
Confidence 6889999999863
No 470
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=20.30 E-value=1.1e+02 Score=17.74 Aligned_cols=22 Identities=9% Similarity=-0.177 Sum_probs=17.2
Q ss_pred HHHHHHHhhhCCCCCcEeEEEC
Q 048514 38 KLLITYCEKKDAQYGTFPFLIN 59 (89)
Q Consensus 38 kL~~~y~~~~g~~~~~~rF~fd 59 (89)
.|.+.+++..|++++.+-..|.
T Consensus 78 ~i~~~l~~~Lgi~~~riyI~f~ 99 (114)
T 3djh_A 78 LLCGLLAERLRISPDRVYINYY 99 (114)
T ss_dssp HHHHHHHHHHCCCGGGEEEEEE
T ss_pred HHHHHHHHHhCcCcceEEEEEE
Confidence 3567778899999998877764
No 471
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=20.27 E-value=50 Score=23.92 Aligned_cols=15 Identities=20% Similarity=-0.011 Sum_probs=12.5
Q ss_pred cccCCCCCCEEEEEe
Q 048514 70 DQLGLKDGDEIVATF 84 (89)
Q Consensus 70 ~~l~medgD~Idv~~ 84 (89)
.++-|+|||+|+++.
T Consensus 361 kdyvv~DGDVi~iv~ 375 (376)
T 4a9a_A 361 LSHILEDEDVVTILK 375 (376)
T ss_dssp TTCBCCTTCEEEEEE
T ss_pred CCcEEcCCCEEEEEe
Confidence 478899999998764
No 472
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=20.08 E-value=26 Score=20.19 Aligned_cols=20 Identities=10% Similarity=0.125 Sum_probs=11.1
Q ss_pred hhhCCCCCcEeEEECCeecC
Q 048514 45 EKKDAQYGTFPFLINGNRFP 64 (89)
Q Consensus 45 ~~~g~~~~~~rF~fdG~~l~ 64 (89)
++.|+....+-..+||.++.
T Consensus 49 ~~aGl~~GD~I~~ing~~v~ 68 (113)
T 2pzd_A 49 HRAGLRPGDVILAIGEQMVQ 68 (113)
T ss_dssp HHHTCCTTCEEEEETTEECC
T ss_pred HHcCCCCCCEEEEECCEECC
Confidence 34455555555556665554
No 473
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=20.08 E-value=1.2e+02 Score=18.36 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=16.4
Q ss_pred EEECCeecCCCCCccccCCCCCCEEEEE
Q 048514 56 FLINGNRFPHIRTPDQLGLKDGDEIVAT 83 (89)
Q Consensus 56 F~fdG~~l~~~~Tp~~l~medgD~Idv~ 83 (89)
-+.+|.+|.... ..-|.+||+|.+=
T Consensus 77 T~vNg~~l~~~~---~~~L~~GD~I~lG 101 (138)
T 2pie_A 77 VWLNRARLEPLR---VYSIHQGDYIQLG 101 (138)
T ss_dssp EEETTEECCTTC---CEECCTTCEEEES
T ss_pred eEECCEEcCCCC---cEECCCCCEEEEC
Confidence 355777776532 3457899998763
Done!