BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048516
(389 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q47JB0|RPOB_DECAR DNA-directed RNA polymerase subunit beta OS=Dechloromonas aromatica
(strain RCB) GN=rpoB PE=3 SV=1
Length = 1427
Score = 35.8 bits (81), Expect = 0.53, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 186 FLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYTYPTFFLYK--------PEKVRCFVQRV 237
F R D + + P +LK G+SS +I+ + + TF L K PE++R V R
Sbjct: 198 FFRVDRRRKM-PVTTLLKAIGMSSEEILDQFFDFDTFLLSKDKVEFTLVPERLRGEVARF 256
Query: 238 DEIGFD 243
D +G D
Sbjct: 257 DFVGPD 262
>sp|Q49AM1|MTER3_HUMAN mTERF domain-containing protein 3, mitochondrial OS=Homo sapiens
GN=MTERFD3 PE=1 SV=2
Length = 385
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 29/119 (24%)
Query: 79 FSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTL---KPKIKIFHEFGF 135
F++KD EN + F +E G + I +++ PN+ HN + K ++I E
Sbjct: 141 FTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNV----FHNPVEKNKQMVRILQE--- 193
Query: 136 SSSDIVDIISSDP----WLLHRSAENQFQRSFLVLNSVLGSNAGVCKAIKATGWFLRRD 190
+D+ S+ WLL ++N F++LNS AIK T FL+
Sbjct: 194 ---SYLDVGGSEANMKVWLLKLLSQN----PFILLNSP--------TAIKETLEFLQEQ 237
>sp|P18759|SEC18_YEAST Vesicular-fusion protein SEC18 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SEC18 PE=1 SV=2
Length = 758
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 2/112 (1%)
Query: 252 AIRTMSSMTKEKWELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRD 311
AI ++ K +L K L + ++ L+ + PAF +SE +++ VE +
Sbjct: 473 AINKTVNIGKGATKLNTKDIAKLKVTREDFLNALNDVTPAFGISEEDLKTCVEGGMMLYS 532
Query: 312 VDISSIVNNASLFLCSIESNLKPRMRVYDMLKSKNLLRRKTGLATVCKLSKG 363
++SI+ N + ++ + + K R+ +L KT LA L G
Sbjct: 533 ERVNSILKNGARYVRQVRESDKSRL--VSLLIHGPAGSGKTALAAEIALKSG 582
>sp|Q8R3J4|MTER1_MOUSE mTERF domain-containing protein 1, mitochondrial OS=Mus musculus
GN=Mterfd1 PE=2 SV=1
Length = 412
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 10/126 (7%)
Query: 31 LSSISLLFFSSSSSSIPKKEKTKIDLADYLINRQHFSPESASEASSLNFSLKDTENSDSV 90
+SS +L + S ++ K + +DL+ E +A++L L ++ +
Sbjct: 136 ISSFTLADYVDHSKTLQKLVQLGVDLSKI---------EKHPDAANLLLRLDFEKHIKQI 186
Query: 91 LSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFSSSDIVDIISSDPWL 150
L FL++ G + + K I +L N LK ++ FS +DI ++ + P+L
Sbjct: 187 LLFLKDLGLEDNQLGPFLTKNYAIFSEDLEN-LKTRVAYLQSKNFSKTDIARMVKNAPFL 245
Query: 151 LHRSAE 156
L S E
Sbjct: 246 LSFSVE 251
>sp|Q967F4|HMR1_CAEEL Cadherin-related hmr-1 OS=Caenorhabditis elegans GN=hmr-1 PE=1 SV=1
Length = 2920
Score = 32.3 bits (72), Expect = 5.8, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 23/136 (16%)
Query: 10 IDSLHFNFNFNNSAHIHKSPFLSSISLLFFSSSSSSIPKKEKTKIDLADYLINRQH--FS 67
++ HF + FN +A H P +SL SSS+ + E T + A +L Q+ F
Sbjct: 705 LNERHFVYRFNVTARDHGEP----VSL---SSSAMIHIRTENTNDESAVFLPTSQYTAFV 757
Query: 68 PESASEASS-LNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPK 126
E A + + +D + + SF+ ++G S+ +K N+ I+ H L
Sbjct: 758 AEDAQGGTPVIQIQARDADRDEVTYSFMDKNGRST--------QKMNLFSIDEHTGL--- 806
Query: 127 IKIFHEFGFSSSDIVD 142
+K+ H G S++D+ +
Sbjct: 807 VKLRH--GVSAADLAE 820
>sp|Q6P6Q6|MTER1_RAT mTERF domain-containing protein 1, mitochondrial OS=Rattus
norvegicus GN=Mterfd1 PE=2 SV=1
Length = 409
Score = 32.3 bits (72), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 31 LSSISLLFFSSSSSSIPKKEKTKIDLADYLINRQHFSPESASEASSLNFSLKDTENSDSV 90
LSS +L + S ++ K + +DL+ +H P+ A+ LNF KD + +
Sbjct: 133 LSSSTLADYVDHSETLQKLVQLGVDLSKI---EKH--PDVANLLLRLNFE-KDIKQ---I 183
Query: 91 LSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFSSSDIVDIISSDPWL 150
L FL++ G + + K I +L N LK ++ FS +DI ++ + P+L
Sbjct: 184 LLFLKDLGLEDNQLGPFLTKNYAIFSEDLEN-LKTRVAYLQSKNFSKTDIACMVKNAPFL 242
Query: 151 LHRSAE 156
L S E
Sbjct: 243 LSFSVE 248
>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus
GN=MTERFD1 PE=2 SV=1
Length = 405
Score = 32.0 bits (71), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 95/230 (41%), Gaps = 19/230 (8%)
Query: 40 SSSSSSIPKKEKTKIDLADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGF 99
SS+ I ++E KI +AD L+ P+S++ L+D + L+ L G
Sbjct: 107 SSALEEISEEEAVKI-IADPLL-----PPQSST--------LRDYVDHSETLTKLVHLGV 152
Query: 100 SSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFSSSDIVDIISSDPWLLHRSAENQF 159
+ +EK +L ++ + + + G + + ++ +P++L E
Sbjct: 153 DLSQVEKRQKAGQLLLTLDFEKDITKILLFLKDVGIEDNQLGPFLTKNPYILGEELEALE 212
Query: 160 QRSFLVLNSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDILKN-CGVSSSQIVKYVYT 218
R + + G NA + + + + L +E+ L + KN G+S + V
Sbjct: 213 TRVAYLKSKKFG-NAEITQMVSRAPYLLLFSVER-LDNRLGFFKNELGLSVKKTKDLVIR 270
Query: 219 YPTFFLYKPEKVRCFVQRVD-EIGFDRNSKMYLPAIRTMSSMTKEKWELK 267
+P K E V+ +Q E GF+RN + A +T +T K L+
Sbjct: 271 FPRLLTGKLEPVKENLQVCQVEFGFERNEVQQI-AFKTPKILTASKKRLR 319
>sp|Q555X4|GNT15_DICDI Glycosyltransferase-like protein gnt15 OS=Dictyostelium discoideum
GN=gnt15 PE=2 SV=1
Length = 516
Score = 31.6 bits (70), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 208 SSSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEIGFDRNSKMY 249
S +V+Y + Y F LY ++ + +R+ GFD+NS +
Sbjct: 394 SEPYLVQYKWIYEPFLLYNRSQIHDYDERLKGYGFDKNSHTF 435
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,546,805
Number of Sequences: 539616
Number of extensions: 4972800
Number of successful extensions: 14642
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 14622
Number of HSP's gapped (non-prelim): 43
length of query: 389
length of database: 191,569,459
effective HSP length: 119
effective length of query: 270
effective length of database: 127,355,155
effective search space: 34385891850
effective search space used: 34385891850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)