Query 048516
Match_columns 389
No_of_seqs 242 out of 1229
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 17:46:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048516.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048516hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mva_O Transcription terminati 100.0 1.4E-56 4.8E-61 439.2 18.9 305 54-371 21-341 (343)
2 3m66_A Mterf3, mterf domain-co 100.0 1.8E-50 6.3E-55 383.3 14.5 255 87-378 5-264 (270)
3 3mva_O Transcription terminati 100.0 4.8E-37 1.6E-41 300.7 17.5 278 83-369 15-310 (343)
4 4fp9_B Mterf domain-containing 100.0 9.5E-37 3.2E-41 295.3 15.7 211 123-377 46-267 (335)
5 3m66_A Mterf3, mterf domain-co 100.0 4.7E-33 1.6E-37 263.6 14.8 211 56-308 8-224 (270)
6 4fp9_B Mterf domain-containing 99.9 1.5E-26 5E-31 224.0 16.2 181 86-312 45-227 (335)
7 4fzv_B Mterf domain-containing 99.2 1.6E-10 5.5E-15 96.4 10.7 177 162-375 36-220 (239)
8 4fzv_B Mterf domain-containing 98.1 2.7E-05 9.2E-10 65.0 11.0 141 94-242 40-182 (239)
9 4ae4_A Ubiquitin-associated pr 92.0 0.72 2.5E-05 37.1 8.4 82 56-147 11-100 (118)
10 4ae4_A Ubiquitin-associated pr 90.4 0.4 1.4E-05 38.6 5.3 40 265-311 77-116 (118)
11 1oqy_A HHR23A, UV excision rep 88.5 0.47 1.6E-05 45.9 5.2 27 85-111 166-192 (368)
12 1oqy_A HHR23A, UV excision rep 85.6 0.32 1.1E-05 47.1 2.2 39 56-101 171-209 (368)
13 3ff5_A PEX14P, peroxisomal bio 85.2 1.9 6.4E-05 29.6 5.2 26 262-287 28-53 (54)
14 3ff5_A PEX14P, peroxisomal bio 83.7 1.5 5.1E-05 30.0 4.2 20 125-144 32-51 (54)
15 3ugm_A TAL effector avrbs3/PTH 82.5 0.73 2.5E-05 47.7 3.3 144 62-215 420-568 (1047)
16 4hpz_A Dtale2; DNA binding pro 79.2 21 0.00072 34.2 11.8 44 62-110 9-52 (463)
17 2ekk_A UBA domain from E3 ubiq 78.0 3 0.0001 27.4 4.2 37 265-309 10-46 (47)
18 2cos_A Serine/threonine protei 77.5 1.1 3.9E-05 30.5 1.9 11 234-244 13-23 (54)
19 1ify_A HHR23A, UV excision rep 76.3 3.3 0.00011 27.5 4.1 40 262-308 6-45 (49)
20 1veg_A NEDD8 ultimate buster-1 75.8 3 0.0001 31.2 4.1 40 265-311 30-69 (83)
21 2cos_A Serine/threonine protei 74.9 2.8 9.6E-05 28.5 3.3 43 265-314 10-52 (54)
22 2w84_A Peroxisomal membrane pr 74.4 4.2 0.00014 29.3 4.3 21 162-182 38-58 (70)
23 1vg5_A RSGI RUH-014, rhomboid 73.6 3.4 0.00012 30.1 3.8 39 264-309 29-67 (73)
24 2dak_A Ubiquitin carboxyl-term 72.5 3.9 0.00013 28.7 3.9 39 265-310 10-48 (63)
25 2ooa_A E3 ubiquitin-protein li 72.3 3 0.0001 28.2 2.9 26 262-287 9-34 (52)
26 2g3q_A Protein YBL047C; endocy 71.2 3 0.0001 26.8 2.7 37 265-308 5-41 (43)
27 2w84_A Peroxisomal membrane pr 71.1 4.1 0.00014 29.3 3.6 27 262-288 33-59 (70)
28 2cpw_A CBL-interacting protein 70.9 5.6 0.00019 28.1 4.3 39 266-310 21-59 (64)
29 2knz_A Ubiquilin-4; cytoplasm, 70.1 4.5 0.00015 27.4 3.5 41 261-308 8-49 (53)
30 1wiv_A UBP14, ubiquitin-specif 69.5 6.1 0.00021 28.7 4.4 39 265-310 30-68 (73)
31 3idw_A Actin cytoskeleton-regu 69.3 5.4 0.00018 28.9 3.9 56 54-110 3-60 (72)
32 1wji_A Tudor domain containing 69.1 7.8 0.00027 27.3 4.7 38 265-309 10-47 (63)
33 1wgn_A UBAP1, ubiquitin associ 67.7 2.4 8.2E-05 29.7 1.7 34 56-95 22-55 (63)
34 2jy5_A Ubiquilin-1; UBA, alter 67.5 9.6 0.00033 25.6 4.8 40 262-308 10-50 (52)
35 2dag_A Ubiquitin carboxyl-term 67.0 6 0.0002 28.8 3.9 41 265-311 10-50 (74)
36 1z96_A DNA-damage, UBA-domain 67.0 6.2 0.00021 24.6 3.6 24 265-288 5-28 (40)
37 2oo9_A E3 ubiquitin-protein li 65.8 6.3 0.00021 25.8 3.3 25 263-287 3-27 (46)
38 1wgn_A UBAP1, ubiquitin associ 65.6 7.4 0.00025 27.3 3.8 40 265-311 20-59 (63)
39 2dai_A Ubadc1, ubiquitin assoc 62.5 8.7 0.0003 28.6 4.1 40 265-311 30-69 (83)
40 3ugm_A TAL effector avrbs3/PTH 62.5 3.8 0.00013 42.5 2.7 82 59-145 451-536 (1047)
41 2d9s_A CBL E3 ubiquitin protei 61.9 7.8 0.00027 26.2 3.3 24 264-287 9-32 (53)
42 1wr1_B Ubiquitin-like protein 61.9 8.4 0.00029 26.6 3.7 41 261-308 14-55 (58)
43 4hpz_A Dtale2; DNA binding pro 60.7 14 0.00049 35.3 6.1 233 63-318 173-420 (463)
44 2juj_A E3 ubiquitin-protein li 60.5 10 0.00035 25.8 3.7 25 263-287 6-30 (56)
45 1vek_A UBP14, ubiquitin-specif 59.5 11 0.00039 28.0 4.3 40 265-310 30-69 (84)
46 2jy5_A Ubiquilin-1; UBA, alter 59.0 6.5 0.00022 26.5 2.6 42 228-289 10-52 (52)
47 2cp8_A NEXT to BRCA1 gene 1 pr 57.9 21 0.00071 24.3 5.0 17 228-244 7-23 (54)
48 1ify_A HHR23A, UV excision rep 57.4 15 0.00051 24.2 4.2 18 57-75 12-29 (49)
49 1vej_A Riken cDNA 4931431F19; 56.0 11 0.00036 27.5 3.5 40 262-308 27-67 (74)
50 2crn_A Ubash3A protein; compac 54.2 14 0.00046 26.1 3.8 38 267-310 12-49 (64)
51 2dkl_A Trinucleotide repeat co 53.2 17 0.00059 27.1 4.4 39 265-310 22-60 (85)
52 2ooa_A E3 ubiquitin-protein li 52.2 16 0.00055 24.6 3.6 38 56-99 14-51 (52)
53 2bwb_A Ubiquitin-like protein 51.4 16 0.00056 23.8 3.6 41 261-308 4-45 (46)
54 2dna_A Unnamed protein product 50.9 15 0.00051 26.2 3.5 41 261-308 16-57 (67)
55 1whc_A RSGI RUH-027, UBA/UBX 3 50.8 14 0.00048 26.0 3.4 40 266-311 11-50 (64)
56 1dv0_A DNA repair protein HHR2 45.6 7.1 0.00024 25.7 1.0 37 266-309 6-42 (47)
57 3idw_A Actin cytoskeleton-regu 43.3 31 0.001 24.9 4.1 53 90-145 5-59 (72)
58 2knz_A Ubiquilin-4; cytoplasm, 42.3 43 0.0015 22.3 4.7 18 91-108 15-33 (53)
59 1wj7_A Hypothetical protein (R 41.2 34 0.0012 26.5 4.4 43 260-309 35-78 (104)
60 3dfg_A Xcrecx, regulatory prot 39.6 60 0.0021 26.9 6.3 92 55-148 53-160 (162)
61 2dah_A Ubiquilin-3; UBA domain 38.9 58 0.002 21.9 4.9 15 265-279 10-24 (54)
62 1wr1_B Ubiquitin-like protein 38.4 80 0.0027 21.6 5.6 17 228-244 15-31 (58)
63 1uxc_A FRUR (1-57), fructose r 37.8 21 0.00073 24.9 2.7 44 203-246 8-51 (65)
64 3oq9_A Tumor necrosis factor r 37.2 81 0.0028 23.4 5.9 27 87-113 12-38 (86)
65 1wji_A Tudor domain containing 35.4 36 0.0012 23.7 3.5 35 56-96 12-46 (63)
66 2crn_A Ubash3A protein; compac 33.8 45 0.0016 23.3 3.8 38 56-98 12-49 (64)
67 2lbc_A Ubiquitin carboxyl-term 33.7 35 0.0012 27.1 3.7 40 265-311 79-118 (126)
68 1vg5_A RSGI RUH-014, rhomboid 33.4 60 0.002 23.4 4.5 35 56-96 32-66 (73)
69 1uxc_A FRUR (1-57), fructose r 32.9 76 0.0026 22.0 4.9 46 272-318 8-53 (65)
70 2l8n_A Transcriptional repress 32.8 51 0.0018 23.1 4.0 43 201-246 15-57 (67)
71 1wiv_A UBP14, ubiquitin-specif 32.6 43 0.0015 24.1 3.6 36 56-97 32-67 (73)
72 2dak_A Ubiquitin carboxyl-term 32.3 32 0.0011 23.8 2.8 35 56-96 12-46 (63)
73 3e3v_A Regulatory protein RECX 32.3 60 0.002 27.4 5.1 22 161-182 141-162 (177)
74 2o71_A Death domain-containing 32.0 92 0.0032 24.4 5.8 17 132-148 44-60 (115)
75 1vej_A Riken cDNA 4931431F19; 32.0 1.2E+02 0.0041 21.9 5.9 18 227-244 26-43 (74)
76 1ixs_A Holliday junction DNA h 31.4 43 0.0015 23.3 3.3 24 87-110 17-40 (62)
77 2v79_A DNA replication protein 31.2 34 0.0011 27.7 3.2 55 87-145 18-73 (135)
78 3k9o_A Ubiquitin-conjugating e 29.5 42 0.0014 29.1 3.7 27 262-288 161-187 (201)
79 2cpw_A CBL-interacting protein 29.5 48 0.0017 23.1 3.4 36 56-97 22-58 (64)
80 2c35_A Human RPB4, DNA-directe 28.9 47 0.0016 27.5 3.8 30 83-112 86-115 (152)
81 2xzm_O RPS13E; ribosome, trans 28.5 50 0.0017 27.3 3.7 59 87-146 35-96 (153)
82 2ef8_A C.ECOT38IS, putative tr 28.4 1.1E+02 0.0036 21.3 5.3 24 295-318 51-74 (84)
83 2xzm_O RPS13E; ribosome, trans 28.3 86 0.0029 25.9 5.1 74 133-209 11-84 (153)
84 2dkl_A Trinucleotide repeat co 28.0 45 0.0016 24.8 3.1 37 57-99 25-61 (85)
85 3u5c_N S27A, YS15, 40S ribosom 27.8 43 0.0015 27.7 3.2 57 88-145 34-93 (151)
86 3e3v_A Regulatory protein RECX 27.6 2.7E+02 0.0091 23.2 9.0 81 200-287 26-109 (177)
87 3v6t_A DHAX3; tandem repeats, 25.6 62 0.0021 31.3 4.2 12 64-75 99-110 (499)
88 1hmj_A RPB5, protein (subunit 25.5 38 0.0013 24.9 2.2 48 86-149 16-63 (78)
89 1g6u_A Domain swapped dimer; d 25.4 1.1E+02 0.0036 19.2 3.9 22 263-284 4-25 (48)
90 3ezq_A Tumor necrosis factor r 25.2 95 0.0032 24.5 4.7 28 86-113 19-46 (115)
91 1ixs_A Holliday junction DNA h 25.2 75 0.0026 22.0 3.7 26 263-288 16-41 (62)
92 1wlq_C CDT1 protein; coiled-co 25.1 50 0.0017 28.8 3.3 68 158-228 31-98 (201)
93 1q08_A Zn(II)-responsive regul 24.4 68 0.0023 23.8 3.7 23 265-287 6-28 (99)
94 1veg_A NEDD8 ultimate buster-1 24.3 54 0.0019 24.3 2.9 34 56-95 32-65 (83)
95 1ich_A TNF-1, tumor necrosis f 23.8 74 0.0025 25.0 3.8 25 89-113 27-51 (112)
96 2dai_A Ubadc1, ubiquitin assoc 23.0 62 0.0021 23.9 3.1 35 56-96 32-66 (83)
97 3k9o_A Ubiquitin-conjugating e 22.6 1E+02 0.0035 26.5 4.9 37 228-284 161-197 (201)
98 2of5_A Death domain-containing 22.3 1.7E+02 0.0057 22.8 5.7 17 132-148 44-60 (114)
99 3d5l_A Regulatory protein RECX 22.0 1.1E+02 0.0039 26.6 5.2 24 159-182 182-205 (221)
100 1neq_A DNA-binding protein NER 21.6 1.1E+02 0.0037 21.7 4.1 27 87-113 11-37 (74)
101 2lbc_A Ubiquitin carboxyl-term 20.8 58 0.002 25.8 2.7 75 266-349 5-92 (126)
102 2qsf_X RAD23, UV excision repa 20.2 71 0.0024 27.0 3.2 21 266-286 132-152 (171)
No 1
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=1.4e-56 Score=439.21 Aligned_cols=305 Identities=17% Similarity=0.272 Sum_probs=275.3
Q ss_pred cchHHHhhhccCCCHHHHHHhhccccCCCCCcChHHHHHHHHhCCCCHHHHHHHHhcCCcccccccccchhhHHHHHHHc
Q 048516 54 IDLADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEF 133 (389)
Q Consensus 54 f~~~~yLi~s~Gls~~~a~~~s~~~~~l~~~~~~~~vl~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~L~pkl~fL~sl 133 (389)
. |++|| ++||++.++|.++++ .+++.+++++++|++||+++|++++||++++.++|++|.++++ ++.|+++||+++
T Consensus 21 ~-~v~~L-~s~Gl~~~~~~~~~p-~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~fL~~l 96 (343)
T 3mva_O 21 D-LLKNL-LTMGVDIDMARKRQP-GVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDLWRKI 96 (343)
T ss_dssp C-HHHHH-HHHTCCHHHHHHHCG-GGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHHHHTTT
T ss_pred H-HHHHH-HHcCCCHHHHHHhCc-hhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHHHHHHc
Confidence 6 99999 689999999999988 7889999999999999999999999999999999999999965 799999999999
Q ss_pred CCChhhhhhHhhcCcccccccch-hhhHHHHHHHHHhhCChhHHHHHHHhcCcccccCchhhhhhHHHHHHHcCCC----
Q 048516 134 GFSSSDIVDIISSDPWLLHRSAE-NQFQRSFLVLNSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDILKNCGVS---- 208 (389)
Q Consensus 134 G~s~~~i~~iv~~~P~iL~~s~e-~~L~p~~~fL~~~g~s~~~v~~~l~~~P~lL~~sle~~l~p~v~~L~~lGv~---- 208 (389)
|+++++++++|.++|++|..+.+ +++.|+++||+++|++++++.+++.++|+++++++|++ ++++++|+++|++
T Consensus 97 G~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~-~~~v~~L~~lgv~~g~~ 175 (343)
T 3mva_O 97 VTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSLGHN 175 (343)
T ss_dssp SSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHH-HHHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHh-hHHHHHHHHhCCCcCCC
Confidence 99999999999999995444444 58999999999999999999999999999999999985 9999999988764
Q ss_pred --chhhhhhcccCcEeeeecchhHHHHHHHHH-HhCCCCCcc--cHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCHH
Q 048516 209 --SSQIVKYVYTYPTFFLYKPEKVRCFVQRVD-EIGFDRNSK--MYLPAIRTMSSMTKEKWELKLKLFR----SLGFSED 279 (389)
Q Consensus 209 --~~~I~~ll~~~P~il~~s~~~~~~~v~~l~-~lG~~~~~~--~f~~a~~~~~~~s~~~~~~kv~~l~----~~G~s~~ 279 (389)
.+.|.+++.++|.+++++.+++++++++++ ++|+++++. ++..-+..+...+.+.|+++++++. ++||+++
T Consensus 176 ~p~~~I~~il~~~P~iL~~s~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG~s~~ 255 (343)
T 3mva_O 176 DPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEE 255 (343)
T ss_dssp CHHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTTCCHH
T ss_pred cHHHHHHHHHHhCChHhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcCCCHH
Confidence 778999999999999999889999999999 599998642 1222123345567788899887665 7999999
Q ss_pred HHHHHHHcCCCccccCHHhHHHHHHHHhhccCCChhhHhhCCceeecCCCCccchHHHHHHHHHHcCcccCCCCch--hh
Q 048516 280 NILSMFRSMPPAFTVSERKIRSVVETLLRRRDVDISSIVNNASLFLCSIESNLKPRMRVYDMLKSKNLLRRKTGLA--TV 357 (389)
Q Consensus 280 ~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~mg~~~~~i~~~P~lL~~Sle~ri~PR~~vl~~L~~kGl~~~~~~l~--~~ 357 (389)
||..||.++|++|++|+++|+++++||.+ ||++.++|+++|++|+||+| ||+||| ++|.++|+ ++++. ++
T Consensus 256 ev~~~v~~~P~il~~s~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~---~~L~~~g~---~~~~~~~~~ 327 (343)
T 3mva_O 256 EVQKFVLSYPDVIFLAEKKFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRI---KELVNAGC---NLSTLNITL 327 (343)
T ss_dssp HHHHHHHTCGGGGGSCHHHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHH---HHHHTTTC---CSSSSCGGG
T ss_pred HHHHHHHhCCchhcccHHHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHH---HHHHHCCC---CCCCCcchh
Confidence 99999999999999999999999999999 99999999999999999999 999999 56779998 56666 99
Q ss_pred hcccHhhHHHhhcc
Q 048516 358 CKLSKGKFLEKYVL 371 (389)
Q Consensus 358 l~~se~~F~~k~v~ 371 (389)
+++||++|.++|..
T Consensus 328 l~~s~~~F~~~~~~ 341 (343)
T 3mva_O 328 LSWSKKRYEAKLKK 341 (343)
T ss_dssp GGSCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHhc
Confidence 99999999999853
No 2
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=1.8e-50 Score=383.33 Aligned_cols=255 Identities=17% Similarity=0.246 Sum_probs=238.8
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHhcCCcccccccccchhhHHHHHHHcCCChhhhhhHhhcCcccccccchhhhHHHHHHH
Q 048516 87 SDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFSSSDIVDIISSDPWLLHRSAENQFQRSFLVL 166 (389)
Q Consensus 87 ~~~vl~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~L~pkl~fL~slG~s~~~i~~iv~~~P~iL~~s~e~~L~p~~~fL 166 (389)
-..++++|.++|++.++|.+....+|.+|.+++++++.|+++||+++|+++++|+++++++|.+|.+++|+ +.|+++||
T Consensus 5 ~s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L 83 (270)
T 3m66_A 5 HSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYL 83 (270)
T ss_dssp HHHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHH
Confidence 34789999999999999988777778889999999999999999999999999999999999999999997 99999999
Q ss_pred HHhhCChhHHHHHHHhcCcccccCchhhhhhHHHHH-HHcCCCchhhhhhcccCcEeeeecchhHHHHHHHHHHhCCCCC
Q 048516 167 NSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDIL-KNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEIGFDRN 245 (389)
Q Consensus 167 ~~~g~s~~~v~~~l~~~P~lL~~sle~~l~p~v~~L-~~lGv~~~~I~~ll~~~P~il~~s~~~~~~~v~~l~~lG~~~~ 245 (389)
+++|++++++.+++.++|++|++++++ ++|++++| +++|++.+++.+++.++|++++.+.+
T Consensus 84 ~~~Gls~~~i~~~l~~~P~lL~~s~~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e----------------- 145 (270)
T 3m66_A 84 HSKNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE----------------- 145 (270)
T ss_dssp HHTTCCHHHHHHHHHHSTTGGGSCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-----------------
T ss_pred HHcCCCHHHHHHHHHhCCHHHcCCHHH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-----------------
Confidence 999999999999999999999999996 99999999 57999999999999999999998754
Q ss_pred cccHHHHHHHHhcCCHHHHHHHHHHH-HHcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhhccCCChhhHhhCCcee
Q 048516 246 SKMYLPAIRTMSSMTKEKWELKLKLF-RSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRDVDISSIVNNASLF 324 (389)
Q Consensus 246 ~~~f~~a~~~~~~~s~~~~~~kv~~l-~~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~mg~~~~~i~~~P~lL 324 (389)
+++++++++ +++||+++||..|+.++|++|++|+++|+++++||+++||++.++|+++|++|
T Consensus 146 -----------------~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~l 208 (270)
T 3m66_A 146 -----------------PVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVF 208 (270)
T ss_dssp -----------------HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHHHHCGGGG
T ss_pred -----------------HHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHHHhCchHh
Confidence 356778876 48999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCccchHHHHHHHHHHcCcccCC---CCchhhhcccHhhHHHhhccCCCCccc
Q 048516 325 LCSIESNLKPRMRVYDMLKSKNLLRRK---TGLATVCKLSKGKFLEKYVLPYQDELG 378 (389)
Q Consensus 325 ~~Sle~ri~PR~~vl~~L~~kGl~~~~---~~l~~~l~~se~~F~~k~v~~~~e~~p 378 (389)
+||+| ||+|||.++++|.++|+..++ +++.+++.+||++|+++|++.+.|+.-
T Consensus 209 ~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~L~~~l~~sd~~F~~~~~~~~~eey~ 264 (270)
T 3m66_A 209 NTRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQDFE 264 (270)
T ss_dssp GSCHH-HHHHHHHHHHHHTCCCCCTTSSSCCCHHHHHHSCHHHHHHHTTCSCHHHHH
T ss_pred hCCHH-HHHHHHHHHHHhhccCCCCCCCCCCCHHHHhcCCHHHHHHHHhcCCHHHHH
Confidence 99999 999999999999999998765 566779999999999999999988754
No 3
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=4.8e-37 Score=300.66 Aligned_cols=278 Identities=11% Similarity=0.188 Sum_probs=233.4
Q ss_pred CCcChHHHHHHHHhCCCCHHHHHHHHhcCCcccccccccchhhHHHHHHHcCCChhhhhhHhhcCcccccccchhhhHHH
Q 048516 83 DTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFSSSDIVDIISSDPWLLHRSAENQFQRS 162 (389)
Q Consensus 83 ~~~~~~~vl~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~L~pkl~fL~slG~s~~~i~~iv~~~P~iL~~s~e~~L~p~ 162 (389)
+|.++++++++|.++|++.++ +++.+|+++..+++ +..++++||+++|+++++|+++|.++|.+|..+.+ +|.|+
T Consensus 15 ~~~~~~~~v~~L~s~Gl~~~~---~~~~~p~l~~~s~~-~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~ 89 (343)
T 3mva_O 15 EPLKNEDLLKNLLTMGVDIDM---ARKRQPGVFHRMIT-NEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKR 89 (343)
T ss_dssp -----CCHHHHHHHHTCCHHH---HHHHCGGGGGCSCC-CHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHH
T ss_pred CccccHHHHHHHHHcCCCHHH---HHHhCchhhccCcc-cHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHH
Confidence 456788999999999999665 57789999999987 58999999999999999999999999999999964 89999
Q ss_pred HHHHHHhhCChhHHHHHHHhcCc-ccccCchhhhhhHHHHHHHcCCCchhhhhhcccCcEeeeecchhHHHHHHHHHHhC
Q 048516 163 FLVLNSVLGSNAGVCKAIKATGW-FLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEIG 241 (389)
Q Consensus 163 ~~fL~~~g~s~~~v~~~l~~~P~-lL~~sle~~l~p~v~~L~~lGv~~~~I~~ll~~~P~il~~s~~~~~~~v~~l~~lG 241 (389)
++||+++|++++++.+++.++|+ +++.+.+++++|+++||+++|++.++|.+++.++|++++++.+++++.+++++++|
T Consensus 90 l~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~~~~v~~L~~lg 169 (343)
T 3mva_O 90 WDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAG 169 (343)
T ss_dssp HHHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHhhHHHHHHHHhC
Confidence 99999999999999999999999 55555545899999999999999999999999999999999999999999999988
Q ss_pred CCCCc---ccHHHH----HHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHcCC-CccccCHHhHHHHHHHHhh---c
Q 048516 242 FDRNS---KMYLPA----IRTMSSMTKEKWELKLKLFR-SLGFSEDNILSMFRSMP-PAFTVSERKIRSVVETLLR---R 309 (389)
Q Consensus 242 ~~~~~---~~f~~a----~~~~~~~s~~~~~~kv~~l~-~~G~s~~~v~~~~~~~P-~iL~~S~~~l~~k~~fL~~---~ 309 (389)
++.+. ..++.+ -+.++..++++++++++|++ ++|++++++..++.+.| .++..+.+.++++++|+.+ .
T Consensus 170 v~~g~~~p~~~I~~il~~~P~iL~~s~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~ 249 (343)
T 3mva_O 170 LSLGHNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFS 249 (343)
T ss_dssp HHTTCSCHHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHT
T ss_pred CCcCCCcHHHHHHHHHHhCChHhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHH
Confidence 76332 122222 23355667999999999999 59999999999999865 8999999999999999986 6
Q ss_pred cCCChhhH----hhCCceeecCCCCccchHHHHHHHHHHcCcccCC-CCchhhhcccHhhHHHhh
Q 048516 310 RDVDISSI----VNNASLFLCSIESNLKPRMRVYDMLKSKNLLRRK-TGLATVCKLSKGKFLEKY 369 (389)
Q Consensus 310 mg~~~~~i----~~~P~lL~~Sle~ri~PR~~vl~~L~~kGl~~~~-~~l~~~l~~se~~F~~k~ 369 (389)
+||+.++| .++|.+|++|.|+ |+|++.++ ...|+...+ .....++.+|-++-..|+
T Consensus 250 lG~s~~ev~~~v~~~P~il~~s~~~-l~~k~~fl---~~mg~~~~~i~~~P~~l~~sleri~~R~ 310 (343)
T 3mva_O 250 LGCTEEEVQKFVLSYPDVIFLAEKK-FNDKIDCL---MEENISISQIIENPRVLDSSISTLKSRI 310 (343)
T ss_dssp TTCCHHHHHHHHHTCGGGGGSCHHH-HHHHHHHH---HTTTCCHHHHHHSGGGGGSCHHHHHHHH
T ss_pred cCCCHHHHHHHHHhCCchhcccHHH-HHHHHHHH---HHcCCCHHHHHhCCHHHhcCHHHHHHHH
Confidence 89999886 6899999999995 99998665 457774332 345678888877654444
No 4
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=100.00 E-value=9.5e-37 Score=295.34 Aligned_cols=211 Identities=15% Similarity=0.246 Sum_probs=187.1
Q ss_pred hhhHHHHHHHcCCChhhhhhHhhcCcccccccchhhhHHHHHHHHHhhCChhHHHHHHHhcCcccccCchhhhhhHHHHH
Q 048516 123 LKPKIKIFHEFGFSSSDIVDIISSDPWLLHRSAENQFQRSFLVLNSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDIL 202 (389)
Q Consensus 123 L~pkl~fL~slG~s~~~i~~iv~~~P~iL~~s~e~~L~p~~~fL~~~g~s~~~v~~~l~~~P~lL~~sle~~l~p~v~~L 202 (389)
+...+.+|.++|+++++|+++++++|.++. .++.+.+.||..+|++.++|.+++.++|++|++++++ ++++++||
T Consensus 46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~il~----~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~-L~~~l~fL 120 (335)
T 4fp9_B 46 LERVMSSLLDMGFSNAHINELLSVRRGASL----QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQ-MRKRSSYL 120 (335)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCSSCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHH-HHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhCcccch----hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHH-HHHHHHHH
Confidence 566788899999999999999999999875 3677899999999999999999999999999999876 99999999
Q ss_pred HHcCCCchhhhhhcccCcEeeeecchhHHHHHHHHHHhCCCCCcccHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHH
Q 048516 203 KNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEIGFDRNSKMYLPAIRTMSSMTKEKWELKLKLFR-SLGFSEDNI 281 (389)
Q Consensus 203 ~~lGv~~~~I~~ll~~~P~il~~s~~~~~~~v~~l~~lG~~~~~~~f~~a~~~~~~~s~~~~~~kv~~l~-~~G~s~~~v 281 (389)
+++|++.++|.+++.++|++++++.+ ++..++.+|+ ++|||.+||
T Consensus 121 ~~lGl~~~~i~~ll~~~P~lL~~s~e----------------------------------~i~~~v~~L~~~lGfS~~ev 166 (335)
T 4fp9_B 121 QKLGLGEGKLKRVLYCCPEIFTMRQQ----------------------------------DINDTVRLLKEKCLFTVQQV 166 (335)
T ss_dssp HHTTCTTTTHHHHHHHCGGGGTSCHH----------------------------------HHHHHHHHHHHTSCCCHHHH
T ss_pred HHcCCCHHHHHHHHHhCchhhccChH----------------------------------HHHHHHHHHHHHcCCCHHHH
Confidence 99999999999999999999888754 4556677776 799999999
Q ss_pred HHHHHcCCCccccCHHhHHHHHHHHhhccCCChhhHhhCCceeecCCCCccchHHHHHHHHHHcCcc----------cCC
Q 048516 282 LSMFRSMPPAFTVSERKIRSVVETLLRRRDVDISSIVNNASLFLCSIESNLKPRMRVYDMLKSKNLL----------RRK 351 (389)
Q Consensus 282 ~~~~~~~P~iL~~S~~~l~~k~~fL~~~mg~~~~~i~~~P~lL~~Sle~ri~PR~~vl~~L~~kGl~----------~~~ 351 (389)
..||.++|+||++|.++|++|++||+++||++..+|++ |.+|+||++ ||+|||.+|+.| |+. ..+
T Consensus 167 ~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~~eIvk-P~~l~ySLe-RIkpRH~fL~~l---G~~q~~~~k~~~~~~n 241 (335)
T 4fp9_B 167 TKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERL---GRYQTPDKKGQTQIPN 241 (335)
T ss_dssp HHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHH---TSCCCCCSSSCCSSCC
T ss_pred HHHHHhCChhhhCCHHHHHHHHHHHHHHhCCCHHHccc-cchhhccHH-HHHHHHHHHHHc---CCccCCCcccccCCCC
Confidence 99999999999999999999999999999999999997 999999999 999999777655 442 236
Q ss_pred CCchhhhcccHhhHHHhhccCCCCcc
Q 048516 352 TGLATVCKLSKGKFLEKYVLPYQDEL 377 (389)
Q Consensus 352 ~~l~~~l~~se~~F~~k~v~~~~e~~ 377 (389)
+++.+++..||+.|+.++.+...|+.
T Consensus 242 psL~~il~~sd~~F~~~vA~~s~eey 267 (335)
T 4fp9_B 242 PLLKDILRVSEAEFLARTACTSVEEF 267 (335)
T ss_dssp CCHHHHTTSCHHHHHHHTSCCCHHHH
T ss_pred ccHHHHHcCCHHHHHHHHHhcCHHHH
Confidence 78999999999999999988776543
No 5
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=4.7e-33 Score=263.63 Aligned_cols=211 Identities=17% Similarity=0.256 Sum_probs=191.7
Q ss_pred hHHHhhhccCCCHHHHHHhhc---cccCCCCCcChHHHHHHHHhCCCCHHHHHHHHhcCCcccccccccchhhHHHHHHH
Q 048516 56 LADYLINRQHFSPESASEASS---LNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHE 132 (389)
Q Consensus 56 ~~~yLi~s~Gls~~~a~~~s~---~~~~l~~~~~~~~vl~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~L~pkl~fL~s 132 (389)
+++||. ++|++.+++.+.-. ..++++..++..++++||+++|+++++|++++.++|.+|.+++++ +.|+++||++
T Consensus 8 ~l~~L~-~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~~ 85 (270)
T 3m66_A 8 TLQKLV-LLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHS 85 (270)
T ss_dssp HHHHHH-HTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHHH
T ss_pred HHHHHH-HcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHHH
Confidence 899997 79999999876532 114555456899999999999999999999999999999999998 9999999999
Q ss_pred cCCChhhhhhHhhcCcccccccchhhhHHHHHHH-HHhhCChhHHHHHHHhcCcccccCchhhhhhHHHHH-HHcCCCch
Q 048516 133 FGFSSSDIVDIISSDPWLLHRSAENQFQRSFLVL-NSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDIL-KNCGVSSS 210 (389)
Q Consensus 133 lG~s~~~i~~iv~~~P~iL~~s~e~~L~p~~~fL-~~~g~s~~~v~~~l~~~P~lL~~sle~~l~p~v~~L-~~lGv~~~ 210 (389)
+|++.++|++++.++|++|+.+++ ++.|+++|| .++|++++++.+++.++|.+++.+.++ ++++++++ +++|++.+
T Consensus 86 ~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e~-~~~~v~~l~~~~G~s~~ 163 (270)
T 3m66_A 86 KNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEP-VKENMKVYRLELGFKHN 163 (270)
T ss_dssp TTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSHH-HHHHHHHHHHTSCCCHH
T ss_pred cCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechHH-HHHHHHHHHHHcCCCHH
Confidence 999999999999999999999999 599999999 589999999999999999999999986 99999976 67999999
Q ss_pred hhhhhcccCcEeeeecchhHHHHHHHHHHhCCCCCcccHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHcCC
Q 048516 211 QIVKYVYTYPTFFLYKPEKVRCFVQRVDEIGFDRNSKMYLPAIRTMSSMTKEKWELKLKLFR-SLGFSEDNILSMFRSMP 289 (389)
Q Consensus 211 ~I~~ll~~~P~il~~s~~~~~~~v~~l~~lG~~~~~~~f~~a~~~~~~~s~~~~~~kv~~l~-~~G~s~~~v~~~~~~~P 289 (389)
+|.+++.++|.+++++. +++++|++|+. ++||+.++| .++|
T Consensus 164 ei~~~v~~~P~il~~s~----------------------------------~~l~~k~~fL~~~mg~~~~~i----~~~P 205 (270)
T 3m66_A 164 EIQHMITRIPKMLTANK----------------------------------MKLTETFDFVHNVMSIPHHII----VKFP 205 (270)
T ss_dssp HHHHHHHHCGGGGTSCH----------------------------------HHHHHHHHHHHTTSCCCHHHH----HHCG
T ss_pred HHHHHHHhCChhheecH----------------------------------HHHHHHHHHHHHHhCCCHHHH----HhCc
Confidence 99999999999988764 56788899997 699999986 6899
Q ss_pred CccccCHHhHHHHHHHHhh
Q 048516 290 PAFTVSERKIRSVVETLLR 308 (389)
Q Consensus 290 ~iL~~S~~~l~~k~~fL~~ 308 (389)
++|++|.++|+++.+|+..
T Consensus 206 ~~l~~Sleri~pR~~~l~~ 224 (270)
T 3m66_A 206 QVFNTRLFKVKERHLFLTY 224 (270)
T ss_dssp GGGGSCHHHHHHHHHHHHH
T ss_pred hHhhCCHHHHHHHHHHHHH
Confidence 9999998899999999876
No 6
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=99.94 E-value=1.5e-26 Score=223.97 Aligned_cols=181 Identities=19% Similarity=0.251 Sum_probs=168.0
Q ss_pred ChHHHHHHHHhCCCCHHHHHHHHhcCCcccccccccchhhHHHHHHHcCCChhhhhhHhhcCcccccccchhhhHHHHHH
Q 048516 86 NSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFSSSDIVDIISSDPWLLHRSAENQFQRSFLV 165 (389)
Q Consensus 86 ~~~~vl~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~L~pkl~fL~slG~s~~~i~~iv~~~P~iL~~s~e~~L~p~~~f 165 (389)
+++.++..|.++||+++||++++..+|.++.. ++.+++.||.++|++.++|++||.++|++|..+++ +|.|+++|
T Consensus 45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f 119 (335)
T 4fp9_B 45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY 119 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence 57889999999999999999999999998743 58899999999999999999999999999999997 69999999
Q ss_pred HHHhhCChhHHHHHHHhcCcccccCchhhhhhHHHHHH-HcCCCchhhhhhcccCcEeeeecchhHHHHHHHHHHhCCCC
Q 048516 166 LNSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDILK-NCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEIGFDR 244 (389)
Q Consensus 166 L~~~g~s~~~v~~~l~~~P~lL~~sle~~l~p~v~~L~-~lGv~~~~I~~ll~~~P~il~~s~~~~~~~v~~l~~lG~~~ 244 (389)
|+++|++.+++.+++.++|++|+++.++ +..++.+|+ ++|++.++|..++.++|++|+++
T Consensus 120 L~~lGl~~~~i~~ll~~~P~lL~~s~e~-i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S------------------ 180 (335)
T 4fp9_B 120 LQKLGLGEGKLKRVLYCCPEIFTMRQQD-INDTVRLLKEKCLFTVQQVTKILHSCPSVLRED------------------ 180 (335)
T ss_dssp HHHTTCTTTTHHHHHHHCGGGGTSCHHH-HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC------------------
T ss_pred HHHcCCCHHHHHHHHHhCchhhccChHH-HHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCC------------------
Confidence 9999999999999999999999999986 899999986 59999999999999999999886
Q ss_pred CcccHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhhccCC
Q 048516 245 NSKMYLPAIRTMSSMTKEKWELKLKLFR-SLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRDV 312 (389)
Q Consensus 245 ~~~~f~~a~~~~~~~s~~~~~~kv~~l~-~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~mg~ 312 (389)
.+++++|++|+. +||++.++|. + |++|++|.++|+++..||.. +|.
T Consensus 181 ----------------~e~L~~K~efLv~~Mgl~~~eIv----k-P~~l~ySLeRIkpRH~fL~~-lG~ 227 (335)
T 4fp9_B 181 ----------------LGQLEYKFQYAYFRMGIKHPDIV----K-SEYLQYSLTKIKQRHIYLER-LGR 227 (335)
T ss_dssp ----------------HHHHHHHHHHHHTTTCCCHHHHH----H-TTGGGSCHHHHHHHHHHHHH-HTS
T ss_pred ----------------HHHHHHHHHHHHHHhCCCHHHcc----c-cchhhccHHHHHHHHHHHHH-cCC
Confidence 456789999998 7999999984 3 99999999999999999998 776
No 7
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=99.17 E-value=1.6e-10 Score=96.38 Aligned_cols=177 Identities=14% Similarity=0.240 Sum_probs=146.2
Q ss_pred HHHHHHHhhCChhHHHHHHHhcCcccccCchhhhhhHHHHHHHcCCCchhhhhhcccCcEeeeecchhHHHHHHHHHHhC
Q 048516 162 SFLVLNSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEIG 241 (389)
Q Consensus 162 ~~~fL~~~g~s~~~v~~~l~~~P~lL~~sle~~l~p~v~~L~~lGv~~~~I~~ll~~~P~il~~s~~~~~~~v~~l~~lG 241 (389)
.+.-+.-+|+..+-+.-++++.|.+|...+-. +..+-.+|+.+|+.+..+.+++.-+|.++++....+...
T Consensus 36 iisefillglnpepvcvvlkkspqllklpimq-mrkrssylqklglgegklkrvlyccpeiftmrqqdindt-------- 106 (239)
T 4fzv_B 36 IISEFILLGLNPEPVCVVLKKSPQLLKLPIMQ-MRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDINDT-------- 106 (239)
T ss_dssp HHHHHHHHCCCTTHHHHHHHSCGGGGTSCHHH-HHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHHHHHHH--------
T ss_pred HHHHHHhhcCCCCceEEEecCCHHHhcChHHH-HHHHHHHHHHhCCCccchhhheecCcHHHHHHHhhHhHH--------
Confidence 34444557888899999999999999998876 889999999999999999999999999998876555444
Q ss_pred CCCCcccHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhhccCCChhhHhhC
Q 048516 242 FDRNSKMYLPAIRTMSSMTKEKWELKLKLFR-SLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRDVDISSIVNN 320 (389)
Q Consensus 242 ~~~~~~~f~~a~~~~~~~s~~~~~~kv~~l~-~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~mg~~~~~i~~~ 320 (389)
+..++ +.-|+..+|.+++..+|.++.-+...++-+++|-.-.||+..-+|++.
T Consensus 107 --------------------------vrllkekclftvqqvtkilhscpsvlredlgqleykfqyayfrmgikhpdivks 160 (239)
T 4fzv_B 107 --------------------------VRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVKS 160 (239)
T ss_dssp --------------------------HHHHHHHSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHHHHT
T ss_pred --------------------------HHHHHHhHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcchhHH
Confidence 44555 467999999999999999999999999999999999999999999986
Q ss_pred CceeecCCCCccchHHHHHHHHHH------cCccc-CCCCchhhhcccHhhHHHhhccCCCC
Q 048516 321 ASLFLCSIESNLKPRMRVYDMLKS------KNLLR-RKTGLATVCKLSKGKFLEKYVLPYQD 375 (389)
Q Consensus 321 P~lL~~Sle~ri~PR~~vl~~L~~------kGl~~-~~~~l~~~l~~se~~F~~k~v~~~~e 375 (389)
.+|.||+. .|+.||-+++.|-+ +|-.. .++-+.+++..||.+|+.+-.....|
T Consensus 161 -eylqyslt-kikqrhiylerlgryqtpdkkgqtqipnpllkdilrvseaeflartactsve 220 (239)
T 4fzv_B 161 -EYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVE 220 (239)
T ss_dssp -TGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCCSSCCCCHHHHHTSCHHHHHHHTSCSCHH
T ss_pred -HHHHHHHH-HHHHHHhHHHHhcccCCCCccCCccCCChHHHHHHHHhHHHHHHHHhcccHH
Confidence 88999998 79999988876632 23221 35668899999999999987665443
No 8
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=98.10 E-value=2.7e-05 Score=64.98 Aligned_cols=141 Identities=16% Similarity=0.278 Sum_probs=119.7
Q ss_pred HHhCCCCHHHHHHHHhcCCcccccccccchhhHHHHHHHcCCChhhhhhHhhcCcccccccchhhhHHHHHHHHHh-hCC
Q 048516 94 LRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFSSSDIVDIISSDPWLLHRSAENQFQRSFLVLNSV-LGS 172 (389)
Q Consensus 94 L~~lGls~~~i~~iv~~~P~lL~~~~~~~L~pkl~fL~slG~s~~~i~~iv~~~P~iL~~s~e~~L~p~~~fL~~~-g~s 172 (389)
+-=+|+.++-+.-++++.|++|....- .+..+-.+|+.+|+....+.+++..+|.|++..-. .|...+..+++- .++
T Consensus 40 fillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrqq-dindtvrllkekclft 117 (239)
T 4fzv_B 40 FILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLFT 117 (239)
T ss_dssp HHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHH-HHHHHHHHHHHHSCCC
T ss_pred HHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHHh-hHhHHHHHHHHhHHhh
Confidence 345899999999999999999998765 58888999999999999999999999999998754 688899999875 568
Q ss_pred hhHHHHHHHhcCcccccCchhhhhhHHHHHH-HcCCCchhhhhhcccCcEeeeecchhHHHHHHHHHHhCC
Q 048516 173 NAGVCKAIKATGWFLRRDLEKTLIPTIDILK-NCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEIGF 242 (389)
Q Consensus 173 ~~~v~~~l~~~P~lL~~sle~~l~p~v~~L~-~lGv~~~~I~~ll~~~P~il~~s~~~~~~~v~~l~~lG~ 242 (389)
..++.+++..||.+|..++.. +.-++.+-. .+|+..-+|.+- ..+.++..+++..--+++.+|-
T Consensus 118 vqqvtkilhscpsvlredlgq-leykfqyayfrmgikhpdivks-----eylqysltkikqrhiylerlgr 182 (239)
T 4fzv_B 118 VQQVTKILHSCPSVLREDLGQ-LEYKFQYAYFRMGIKHPDIVKS-----EYLQYSLTKIKQRHIYLERLGR 182 (239)
T ss_dssp HHHHHHHHHHCGGGGTSCTTH-HHHHHHHHHHTSCCCHHHHHHT-----TGGGSCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCcHHHHHHHhh-hhhhHhHHHHHccCCCcchhHH-----HHHHHHHHHHHHHHhHHHHhcc
Confidence 899999999999999999875 888877754 489999888653 3466777788888888888885
No 9
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=92.03 E-value=0.72 Score=37.10 Aligned_cols=82 Identities=20% Similarity=0.331 Sum_probs=51.7
Q ss_pred hHHHhhhccCCCHHHHHHhhccccCCCCCcChHHHHHHHH------hCCCCHHHHHHHHhcCCccccccccc--chhhHH
Q 048516 56 LADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLR------ESGFSSTHIEKMVAKKPNILLINLHN--TLKPKI 127 (389)
Q Consensus 56 ~~~yLi~s~Gls~~~a~~~s~~~~~l~~~~~~~~vl~~L~------~lGls~~~i~~iv~~~P~lL~~~~~~--~L~pkl 127 (389)
++..|+ ..||+...+.+|.+ .+-.+++.+++||- +-|+++.++...+..+.. +..+ .-...+
T Consensus 11 ~v~~l~-~MGFp~~~~~kAl~-----~~g~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~----~~~~~~~~~~~v 80 (118)
T 4ae4_A 11 CVETVV-NMGYSYECVLRAMK-----AAGANIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQC----SEEKMMEFLQLM 80 (118)
T ss_dssp HHHHHH-HTTCCHHHHHHHHH-----HHCSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSS----CHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCHHHHHHHHH-----HHCcCHHHHHHHHHHhchhcccCCChhhhHHHHHhccC----CccccccCHHHH
Confidence 778887 69999999988865 22237888888884 457787777766654321 1110 011246
Q ss_pred HHHHHcCCChhhhhhHhhcC
Q 048516 128 KIFHEFGFSSSDIVDIISSD 147 (389)
Q Consensus 128 ~fL~slG~s~~~i~~iv~~~ 147 (389)
.-|.++||+..++.+.+..+
T Consensus 81 ~~L~eMGF~~~~a~~AL~~~ 100 (118)
T 4ae4_A 81 SKFKEMGFELKDIKEVLLLH 100 (118)
T ss_dssp HHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHc
Confidence 66667777777766665544
No 10
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=90.40 E-value=0.4 Score=38.63 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhhccC
Q 048516 265 ELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRD 311 (389)
Q Consensus 265 ~~kv~~l~~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~mg 311 (389)
.+++.-|.+|||+.+++..+++.+- ..+.+.+++|....|
T Consensus 77 ~~~v~~L~eMGF~~~~a~~AL~~~~-------nd~erAlewL~~~~~ 116 (118)
T 4ae4_A 77 LQLMSKFKEMGFELKDIKEVLLLHN-------NDQDNALEDLMARAG 116 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTT-------TCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHHhcc
Confidence 4678888999999999999987643 457778888876544
No 11
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=88.54 E-value=0.47 Score=45.92 Aligned_cols=27 Identities=7% Similarity=0.245 Sum_probs=16.5
Q ss_pred cChHHHHHHHHhCCCCHHHHHHHHhcC
Q 048516 85 ENSDSVLSFLRESGFSSTHIEKMVAKK 111 (389)
Q Consensus 85 ~~~~~vl~~L~~lGls~~~i~~iv~~~ 111 (389)
++-+..++-|.++||+..++.+.++..
T Consensus 166 ~~~~~~i~~l~~MGf~~~~~~~AL~a~ 192 (368)
T 1oqy_A 166 SEYETMLTEIMSMGYERERVVAALRAS 192 (368)
T ss_dssp TTHHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 344555666666777766666666543
No 12
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=85.62 E-value=0.32 Score=47.12 Aligned_cols=39 Identities=13% Similarity=0.253 Sum_probs=29.0
Q ss_pred hHHHhhhccCCCHHHHHHhhccccCCCCCcChHHHHHHHHhCCCCH
Q 048516 56 LADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSS 101 (389)
Q Consensus 56 ~~~yLi~s~Gls~~~a~~~s~~~~~l~~~~~~~~vl~~L~~lGls~ 101 (389)
+|.-|+ ..||+++++.+|-+ .+..|++..++||-+ |+.+
T Consensus 171 ~i~~l~-~MGf~~~~~~~AL~-----a~~nn~~~A~e~L~~-gip~ 209 (368)
T 1oqy_A 171 MLTEIM-SMGYERERVVAALR-----ASYNNPHRAVEYLLT-GIPG 209 (368)
T ss_dssp HHHHHH-TTTCCSHHHHHHHH-----HSCSSTTHHHHTTTT-SSTT
T ss_pred HHHHHH-HcCCCHHHHHHHHH-----HcCCCHHHHHHHHHh-CCCc
Confidence 467887 69999999998866 233588888999854 5553
No 13
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=85.17 E-value=1.9 Score=29.55 Aligned_cols=26 Identities=12% Similarity=0.318 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHc
Q 048516 262 EKWELKLKLFRSLGFSEDNILSMFRS 287 (389)
Q Consensus 262 ~~~~~kv~~l~~~G~s~~~v~~~~~~ 287 (389)
..+..|++||++=|++++||..++.+
T Consensus 28 sp~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 28 SPLATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp SCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 45789999999999999999999876
No 14
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=83.68 E-value=1.5 Score=30.03 Aligned_cols=20 Identities=10% Similarity=0.207 Sum_probs=9.7
Q ss_pred hHHHHHHHcCCChhhhhhHh
Q 048516 125 PKIKIFHEFGFSSSDIVDII 144 (389)
Q Consensus 125 pkl~fL~slG~s~~~i~~iv 144 (389)
-|++||++.|++.+||...+
T Consensus 32 ~K~~FL~sKGLt~~EI~~Al 51 (54)
T 3ff5_A 32 TRRAFLKKKGLTDEEIDLAF 51 (54)
T ss_dssp HHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHH
Confidence 34555555555555544443
No 15
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=82.48 E-value=0.73 Score=47.68 Aligned_cols=144 Identities=13% Similarity=0.167 Sum_probs=58.8
Q ss_pred hccCCCHHHHHHhhccccCCCCCcChHHHHHH---HH-hCCCCHHHHHHHHhcCCcccccccccchhhHHHHHHHcCCCh
Q 048516 62 NRQHFSPESASEASSLNFSLKDTENSDSVLSF---LR-ESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFSS 137 (389)
Q Consensus 62 ~s~Gls~~~a~~~s~~~~~l~~~~~~~~vl~~---L~-~lGls~~~i~~iv~~~P~lL~~~~~~~L~pkl~fL~slG~s~ 137 (389)
..+|||+++..+++. +.-...-.+.|.+. |. .+||+.+||.+|-...-.=-....-..+.|.+. +..|+++
T Consensus 420 ~~~glt~~qvv~IAs---n~GGkQALe~V~~llp~L~~~~glt~aqvVaIAsn~GGkQALeaV~~llpvl~--~~~gls~ 494 (1047)
T 3ugm_A 420 QAHGLTPDQVVAIAS---HDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLC--QAHGLTP 494 (1047)
T ss_dssp TTSSCCHHHHHHHHS---STTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHSSSTTHHHHHHHHHHHHHHHH--HHSCCCS
T ss_pred hhcCCCHHHhhhhhc---cCchHHHHHHHHHHhHHhhcccCCCHHHHHHHHhcCcHHHHHHHHHHHHHHHH--HhcCCCH
Confidence 346666666666543 10011112333322 22 567777776665544321111100001222211 2478888
Q ss_pred hhhhhHhhcCcccccccchhhhHHHHHHHHHhhCChhHHHHHHHhcCcccccCchhhhhhHHHHHHH-cCCCchhhhhh
Q 048516 138 SDIVDIISSDPWLLHRSAENQFQRSFLVLNSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDILKN-CGVSSSQIVKY 215 (389)
Q Consensus 138 ~~i~~iv~~~P~iL~~s~e~~L~p~~~fL~~~g~s~~~v~~~l~~~P~lL~~sle~~l~p~v~~L~~-lGv~~~~I~~l 215 (389)
++|..|...+-.-=....-..+.|.+. +..|++.++|+++....--- .-+|. +..-.-.|++ .|++.++|..+
T Consensus 495 ~qvvaiA~n~GGkQALeaV~~l~p~l~--~~~gls~~qVVaIAsN~GGk--QALea-V~~~lp~Lr~a~~ls~~qVVaI 568 (1047)
T 3ugm_A 495 DQVVAIASNIGGKQALATVQRLLPVLC--QAHGLTPDQVVAIASNGGGK--QALET-VQRLLPVLCQAHGLTPDQVVAI 568 (1047)
T ss_dssp HHHHHHHSSTTHHHHHHHHHHHSGGGT--TTTCCCSHHHHHHHSSTTCH--HHHHH-HHHHHHHHTTTSCCTHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHHhhhhhc--cccCCCHHHhhhhhcCCcHH--HHHHH-HHHHhHHHHHHhCCCHHHeeee
Confidence 777777654321000000011222222 34566666666555332110 01222 3333333442 66666666544
No 16
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=79.25 E-value=21 Score=34.18 Aligned_cols=44 Identities=16% Similarity=0.207 Sum_probs=27.6
Q ss_pred hccCCCHHHHHHhhccccCCCCCcChHHHHHHHHhCCCCHHHHHHHHhc
Q 048516 62 NRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAK 110 (389)
Q Consensus 62 ~s~Gls~~~a~~~s~~~~~l~~~~~~~~vl~~L~~lGls~~~i~~iv~~ 110 (389)
..+|.|+++..|+-. ++-.....--+-|.++||+++||..|-++
T Consensus 9 ~~lgys~~q~~k~k~-----~~~s~va~~h~~l~~~g~t~~~i~~is~~ 52 (463)
T 4hpz_A 9 RTLGYSQQQQEKIKP-----KVRSTVAQHHEALVGHGFTHAHIVALSQH 52 (463)
T ss_dssp GGGTCCHHHHHHHCG-----GGHHHHHHHHHHHHHTTCCHHHHHHHTTS
T ss_pred HHhccCHHHHHHhhH-----HHHHHHHHHHHHHHhcCCCHHHHHHhhcc
Confidence 468888888887644 11112222334567888888888876654
No 17
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.03 E-value=3 Score=27.40 Aligned_cols=37 Identities=16% Similarity=0.407 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhhc
Q 048516 265 ELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRR 309 (389)
Q Consensus 265 ~~kv~~l~~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~ 309 (389)
+.+|+-|.+|||+++++..+++.. + .++..++||.+.
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~----~----n~e~A~~~L~~h 46 (47)
T 2ekk_A 10 QQQLQQLMDMGFTREHAMEALLNT----S----TMEQATEYLLTH 46 (47)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHS----C----SHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc----C----CHHHHHHHHHcC
Confidence 456778888899999888888875 1 477778887753
No 18
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=77.52 E-value=1.1 Score=30.45 Aligned_cols=11 Identities=27% Similarity=0.483 Sum_probs=5.7
Q ss_pred HHHHHHhCCCC
Q 048516 234 VQRVDEIGFDR 244 (389)
Q Consensus 234 v~~l~~lG~~~ 244 (389)
++.|.+|||++
T Consensus 13 lq~L~eMGFd~ 23 (54)
T 2cos_A 13 LQELVNAGCDQ 23 (54)
T ss_dssp HHHHHHHHCCH
T ss_pred HHHHHHcCCCH
Confidence 44555555554
No 19
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=76.35 E-value=3.3 Score=27.54 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhh
Q 048516 262 EKWELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLR 308 (389)
Q Consensus 262 ~~~~~kv~~l~~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~ 308 (389)
...+.+|+-|.+|||+++++..+++.+-. .+...++||.+
T Consensus 6 ~~~~~~i~~L~~MGF~~~~a~~AL~~~~~-------n~e~A~e~L~~ 45 (49)
T 1ify_A 6 SEYETMLTEIMSMGYERERVVAALRASYN-------NPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTTTS-------CSHHHHHHHHH
T ss_pred ccCHHHHHHHHHcCCCHHHHHHHHHHhCC-------CHHHHHHHHHh
Confidence 44578889999999999999999886432 45677888876
No 20
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=75.84 E-value=3 Score=31.20 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhhccC
Q 048516 265 ELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRD 311 (389)
Q Consensus 265 ~~kv~~l~~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~mg 311 (389)
+.+|+-|.+|||+++++..+++..- ..+.+.++||.+..|
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t~-------gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVFG-------GNVQLAAQTLAHHGG 69 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHTT-------TCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhCCC
Confidence 5678888899999999998888533 248889999998777
No 21
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=74.92 E-value=2.8 Score=28.51 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhhccCCCh
Q 048516 265 ELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRDVDI 314 (389)
Q Consensus 265 ~~kv~~l~~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~mg~~~ 314 (389)
+..++-|.++||+++-+..++++ ....-|++.++||.+ |+++.
T Consensus 10 ~qmlq~L~eMGFd~erae~Alk~------Tg~~Gle~AmewL~k-~~~~~ 52 (54)
T 2cos_A 10 RQMLQELVNAGCDQEMAGRALKQ------TGSRSIEAALEYISK-MSGPS 52 (54)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHH------HTSCCHHHHHHHHHH-HSCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH------hCcccHHHHHHHHHH-hcCCC
Confidence 34477888999999998888875 333459999999998 87763
No 22
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=74.42 E-value=4.2 Score=29.28 Aligned_cols=21 Identities=10% Similarity=-0.061 Sum_probs=9.9
Q ss_pred HHHHHHHhhCChhHHHHHHHh
Q 048516 162 SFLVLNSVLGSNAGVCKAIKA 182 (389)
Q Consensus 162 ~~~fL~~~g~s~~~v~~~l~~ 182 (389)
+++||++-|+++++|-.++.+
T Consensus 38 K~~FL~sKGLt~eEI~~Al~r 58 (70)
T 2w84_A 38 RRAFLKKKGLTDEEIDMAFQQ 58 (70)
T ss_dssp HHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 444444444444444444443
No 23
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=73.64 E-value=3.4 Score=30.14 Aligned_cols=39 Identities=15% Similarity=0.313 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhhc
Q 048516 264 WELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRR 309 (389)
Q Consensus 264 ~~~kv~~l~~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~ 309 (389)
.+++|+-|.+|||+++++..+++++= ..+...++||.+.
T Consensus 29 ~ee~I~~L~eMGF~r~~a~~AL~~~~-------~nve~Ave~Ll~~ 67 (73)
T 1vg5_A 29 SEEQIQKLVAMGFDRTQVEVALAAAD-------DDLTVAVEILMSQ 67 (73)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHHT-------SCHHHHHHHHHTC
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHC
Confidence 46778888888999999988887532 2577788888873
No 24
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.49 E-value=3.9 Score=28.71 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhhcc
Q 048516 265 ELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRR 310 (389)
Q Consensus 265 ~~kv~~l~~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~m 310 (389)
+.+|+-|.+|||+++++..+++.+-. .++..++||.+.+
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t~~-------nve~A~e~L~~~~ 48 (63)
T 2dak_A 10 EDCVTTIVSMGFSRDQALKALRATNN-------SLERAVDWIFSHI 48 (63)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTS-------CSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-------CHHHHHHHHHhCC
Confidence 56778888999999999999887532 4778888988754
No 25
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=72.34 E-value=3 Score=28.16 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHc
Q 048516 262 EKWELKLKLFRSLGFSEDNILSMFRS 287 (389)
Q Consensus 262 ~~~~~kv~~l~~~G~s~~~v~~~~~~ 287 (389)
+..+..|+-|.++||+++++.+++..
T Consensus 9 ~~~~~~Ia~Lm~mGFsr~~ai~AL~~ 34 (52)
T 2ooa_A 9 ENVDAKIAKLMGEGYAFEEVKRALEI 34 (52)
T ss_dssp --CHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CChHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45567889999999999999888764
No 26
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=71.19 E-value=3 Score=26.79 Aligned_cols=37 Identities=16% Similarity=0.355 Sum_probs=27.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhh
Q 048516 265 ELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLR 308 (389)
Q Consensus 265 ~~kv~~l~~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~ 308 (389)
+++|+-|.++||+++++..++..+- ..+...++||.+
T Consensus 5 e~~i~~L~~MGF~~~~a~~AL~~~~-------~n~e~A~~~L~~ 41 (43)
T 2g3q_A 5 SLAVEELSGMGFTEEEAHNALEKCN-------WDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHT-------SCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-------cCHHHHHHHHHc
Confidence 4678888899999999888887631 246667777765
No 27
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=71.12 E-value=4.1 Score=29.31 Aligned_cols=27 Identities=11% Similarity=0.298 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHcC
Q 048516 262 EKWELKLKLFRSLGFSEDNILSMFRSM 288 (389)
Q Consensus 262 ~~~~~kv~~l~~~G~s~~~v~~~~~~~ 288 (389)
..+..|++||++=|++++||..++.+.
T Consensus 33 sp~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 33 SPLATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp SCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 447899999999999999999999874
No 28
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=70.87 E-value=5.6 Score=28.10 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhhcc
Q 048516 266 LKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRR 310 (389)
Q Consensus 266 ~kv~~l~~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~m 310 (389)
.+|+-|.+|||+++++..+++..-. ..++..++||.+.+
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t~~------~nve~A~ewL~~~~ 59 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALASTGG------RSVQTACDWLFSHS 59 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTT------SCHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC------CCHHHHHHHHHhCC
Confidence 4567788888999888888875332 25778888888754
No 29
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=70.06 E-value=4.5 Score=27.39 Aligned_cols=41 Identities=22% Similarity=0.433 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHcCCCccccCHHhHHHHHHHHhh
Q 048516 261 KEKWELKLKLFRSLGF-SEDNILSMFRSMPPAFTVSERKIRSVVETLLR 308 (389)
Q Consensus 261 ~~~~~~kv~~l~~~G~-s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~ 308 (389)
++.++.+++-|++||| +++.+..+++..- ..+...++||.+
T Consensus 8 e~~~~~~l~~L~~MGF~~~~~~~~AL~~t~-------gnve~Ave~L~~ 49 (53)
T 2knz_A 8 EVRFQQQLEQLNSMGFINREANLQALIATG-------GDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHHT-------SCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHhC-------CCHHHHHHHHHH
Confidence 5567788888888888 7777776666422 246677777776
No 30
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=69.47 E-value=6.1 Score=28.68 Aligned_cols=39 Identities=15% Similarity=0.277 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhhcc
Q 048516 265 ELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRR 310 (389)
Q Consensus 265 ~~kv~~l~~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~m 310 (389)
+.+|+.|.+|||+++++..+++.+- ..+...++||.+..
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~t~-------~nve~Ave~L~~~~ 68 (73)
T 1wiv_A 30 QSSVDTLLSFGFAEDVARKALKASG-------GDIEKATDWVFNNS 68 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHhCC
Confidence 4567788888899888888887632 25777888887743
No 31
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=69.27 E-value=5.4 Score=28.87 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=34.9
Q ss_pred cchHHHhhhccCCCHHHHHHhhcc--ccCCCCCcChHHHHHHHHhCCCCHHHHHHHHhc
Q 048516 54 IDLADYLINRQHFSPESASEASSL--NFSLKDTENSDSVLSFLRESGFSSTHIEKMVAK 110 (389)
Q Consensus 54 f~~~~yLi~s~Gls~~~a~~~s~~--~~~l~~~~~~~~vl~~L~~lGls~~~i~~iv~~ 110 (389)
|+=.+|.+ +||+....+.+-+.. .-+.+..--||-.-+.|+++|+...||-+|.+.
T Consensus 3 ydWf~FFl-~aGv~~~~c~rYA~~F~~~ri~e~mL~Dl~~~~Lr~LGi~eGDIIrVmk~ 60 (72)
T 3idw_A 3 YDWFEFFL-NCGVDVSNCQRYTINFDREQLTEDMMPDINNSMLRTLGLREGDIVRVMKH 60 (72)
T ss_dssp CCHHHHHH-HTTCCHHHHHHHHHHHHHTTCCGGGGGGCCHHHHHHTTCCHHHHHHHHHH
T ss_pred CcHHHHHH-HcCCChHHHHHHHHHHHHccCCHHHHhhCCHHHHHHcCCchhhHHHHHHH
Confidence 44456676 699999888765441 112221112444456789999998888887754
No 32
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=69.05 E-value=7.8 Score=27.26 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhhc
Q 048516 265 ELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRR 309 (389)
Q Consensus 265 ~~kv~~l~~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~ 309 (389)
+++|+.|.+|||+++++..+++.+= ..+...++||.+.
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~~-------~nve~A~e~L~~~ 47 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDNG-------NNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTT-------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHC
Confidence 4567888889999999888877642 2477888888874
No 33
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=67.73 E-value=2.4 Score=29.72 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=20.7
Q ss_pred hHHHhhhccCCCHHHHHHhhccccCCCCCcChHHHHHHHH
Q 048516 56 LADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLR 95 (389)
Q Consensus 56 ~~~yLi~s~Gls~~~a~~~s~~~~~l~~~~~~~~vl~~L~ 95 (389)
.|+-|+ +.||++++|.+|-+ .+..|++..++||=
T Consensus 22 ~V~~Lv-sMGFs~~qA~kALK-----at~~NvErAaDWLF 55 (63)
T 1wgn_A 22 CVETVV-NMGYSYECVLRAMK-----KKGENIEQILDYLF 55 (63)
T ss_dssp HHHHHH-HHHCCHHHHHHHHH-----HHCSCHHHHHHHHH
T ss_pred HHHHHH-HcCCCHHHHHHHHH-----HcCCCHHHHHHHHH
Confidence 455565 56777777766655 34456666666663
No 34
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=67.51 E-value=9.6 Score=25.61 Aligned_cols=40 Identities=20% Similarity=0.420 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCC-CHHHHHHHHHcCCCccccCHHhHHHHHHHHhh
Q 048516 262 EKWELKLKLFRSLGF-SEDNILSMFRSMPPAFTVSERKIRSVVETLLR 308 (389)
Q Consensus 262 ~~~~~kv~~l~~~G~-s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~ 308 (389)
+.++.+++-|++||| +++.+..++...- ..+...++||..
T Consensus 10 ~~~~~~l~~L~~MGF~~~~~~~~AL~~t~-------gn~e~A~e~L~~ 50 (52)
T 2jy5_A 10 VRFQQQLEQLSAMGFLNREANLQALIATG-------GDINAAIERLLG 50 (52)
T ss_dssp TTTHHHHHHHHHTTCCCHHHHHHHHHHHT-------TCHHHHHHHHTT
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHhC-------CCHHHHHHHHHh
Confidence 344566666666777 5555555554311 135555666543
No 35
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.01 E-value=6 Score=28.83 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhhccC
Q 048516 265 ELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRD 311 (389)
Q Consensus 265 ~~kv~~l~~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~mg 311 (389)
+.+|+-|.+|||+++.+.++++..-. ..++..++||.+.++
T Consensus 10 e~~v~~L~~MGF~~~~a~~AL~~t~n------~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 10 ESVIIQLVEMGFPMDACRKAVYYTGN------SGAEAAMNWVMSHMD 50 (74)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHTS------CCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC------CCHHHHHHHHHhCCC
Confidence 45677888899999999888875321 247888999998653
No 36
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=66.95 E-value=6.2 Score=24.55 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=17.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHcC
Q 048516 265 ELKLKLFRSLGFSEDNILSMFRSM 288 (389)
Q Consensus 265 ~~kv~~l~~~G~s~~~v~~~~~~~ 288 (389)
+++|+-+.++||+++++..++..+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~ 28 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAA 28 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 456778888888888887776653
No 37
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=65.79 E-value=6.3 Score=25.80 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHc
Q 048516 263 KWELKLKLFRSLGFSEDNILSMFRS 287 (389)
Q Consensus 263 ~~~~kv~~l~~~G~s~~~v~~~~~~ 287 (389)
.++..|+-|.++||+.+++.+++..
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~i 27 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALVI 27 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3678889999999999999887753
No 38
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=65.62 E-value=7.4 Score=27.25 Aligned_cols=40 Identities=13% Similarity=0.306 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhhccC
Q 048516 265 ELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRD 311 (389)
Q Consensus 265 ~~kv~~l~~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~mg 311 (389)
+..|+-+..|||++++...++++.. ..+++.+|||..++.
T Consensus 20 ~e~V~~LvsMGFs~~qA~kALKat~-------~NvErAaDWLFSH~D 59 (63)
T 1wgn_A 20 RQCVETVVNMGYSYECVLRAMKKKG-------ENIEQILDYLFAHSG 59 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC-------SCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhCCC
Confidence 4568889999999999999998654 368888999887653
No 39
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.48 E-value=8.7 Score=28.64 Aligned_cols=40 Identities=18% Similarity=0.346 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhhccC
Q 048516 265 ELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRD 311 (389)
Q Consensus 265 ~~kv~~l~~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~mg 311 (389)
+.+|+-|.+|||+++.+.++++.+ -..++..++||.+.++
T Consensus 30 e~~i~~L~~MGF~~~~a~~AL~~t-------~~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 30 EAALRQLTEMGFPENRATKALQLN-------HMSVPQAMEWLIEHAE 69 (83)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT-------TSCHHHHHHHHHHGGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh-------CCCHHHHHHHHHHCCC
Confidence 456777888899999988888764 1257788899988653
No 40
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=62.48 E-value=3.8 Score=42.52 Aligned_cols=82 Identities=15% Similarity=0.260 Sum_probs=43.7
Q ss_pred HhhhccCCCHHHHHHhhccccCCCCCcChHHHHHHH----HhCCCCHHHHHHHHhcCCcccccccccchhhHHHHHHHcC
Q 048516 59 YLINRQHFSPESASEASSLNFSLKDTENSDSVLSFL----RESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFG 134 (389)
Q Consensus 59 yLi~s~Gls~~~a~~~s~~~~~l~~~~~~~~vl~~L----~~lGls~~~i~~iv~~~P~lL~~~~~~~L~pkl~fL~slG 134 (389)
-|....|||++++.+++. +--...-.+.|.+++ ..+||+.+||.+|-..+-.-=....-..+.|++. +..|
T Consensus 451 ~L~~~~glt~aqvVaIAs---n~GGkQALeaV~~llpvl~~~~gls~~qvvaiA~n~GGkQALeaV~~l~p~l~--~~~g 525 (1047)
T 3ugm_A 451 VLCQTHGLTPAQVVAIAS---HDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLC--QAHG 525 (1047)
T ss_dssp HHHTTSCCCHHHHHHHSS---STTHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHSSTTHHHHHHHHHHHSGGGT--TTTC
T ss_pred HhhcccCCCHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhccchHHHHHHHHHhhhhhc--cccC
Confidence 344468999999998865 111112244554443 3599999998888755321100000012333333 4566
Q ss_pred CChhhhhhHhh
Q 048516 135 FSSSDIVDIIS 145 (389)
Q Consensus 135 ~s~~~i~~iv~ 145 (389)
++++|+..|-+
T Consensus 526 ls~~qVVaIAs 536 (1047)
T 3ugm_A 526 LTPDQVVAIAS 536 (1047)
T ss_dssp CCSHHHHHHHS
T ss_pred CCHHHhhhhhc
Confidence 66666655544
No 41
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=61.88 E-value=7.8 Score=26.25 Aligned_cols=24 Identities=17% Similarity=0.219 Sum_probs=19.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHc
Q 048516 264 WELKLKLFRSLGFSEDNILSMFRS 287 (389)
Q Consensus 264 ~~~kv~~l~~~G~s~~~v~~~~~~ 287 (389)
.+.+|+-|.++||+++++.+++..
T Consensus 9 ~e~~I~~L~~lGF~r~~ai~AL~~ 32 (53)
T 2d9s_A 9 LSSEIERLMSQGYSYQDIQKALVI 32 (53)
T ss_dssp SHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHH
Confidence 356688888999999998887754
No 42
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=61.86 E-value=8.4 Score=26.63 Aligned_cols=41 Identities=24% Similarity=0.515 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHcCCC-HHHHHHHHHcCCCccccCHHhHHHHHHHHhh
Q 048516 261 KEKWELKLKLFRSLGFS-EDNILSMFRSMPPAFTVSERKIRSVVETLLR 308 (389)
Q Consensus 261 ~~~~~~kv~~l~~~G~s-~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~ 308 (389)
++.++.+++-|++|||+ ++.+..+++. +--.+...++||.+
T Consensus 14 e~~~~~qi~~L~~MGF~d~~~~~~AL~~-------~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 14 EERYEHQLRQLNDMGFFDFDRNVAALRR-------SGGSVQGALDSLLN 55 (58)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHHHHHH-------HTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHH-------hCCCHHHHHHHHHh
Confidence 44566677777777764 4454555442 12245556666654
No 43
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=60.71 E-value=14 Score=35.32 Aligned_cols=233 Identities=13% Similarity=0.162 Sum_probs=105.6
Q ss_pred ccCCCHHHHHHhhccccCCCCCcChHHHHHHH---H-hCCCCHHHHHHHHhcCCcccccccccchhhHHHHHHHcCCChh
Q 048516 63 RQHFSPESASEASSLNFSLKDTENSDSVLSFL---R-ESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFSSS 138 (389)
Q Consensus 63 s~Gls~~~a~~~s~~~~~l~~~~~~~~vl~~L---~-~lGls~~~i~~iv~~~P~lL~~~~~~~L~pkl~fL~slG~s~~ 138 (389)
-+|||+++..++.. +--...-.+.|.+++ . -+||+.+||.+|-...-.==....-..+.|.+. ...||+++
T Consensus 173 a~~Ls~~qVVaIAs---n~GGkQALeaV~~llpvl~~~~~Ls~aqVVaIAsn~GGkQALeaV~~llpvl~--~~~gls~a 247 (463)
T 4hpz_A 173 DHGLTPQQVVAIAS---NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLC--QDHGLTPQ 247 (463)
T ss_dssp HHCCCHHHHHHHHT---STTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSTTHHHHHHHHHHHHHHHH--HHSCCCHH
T ss_pred hcCCCHHHHHHHhh---cCchHHHHHHHHHHHHHhhccccCCHHHHHHHhhccccHHHHHHHHhhhhhhh--hhccCCHH
Confidence 37899988888754 100011134444433 3 378888888877664321000000011233222 24788888
Q ss_pred hhhhHhhcCcc--cccccchhhhHHHHHHHHH-hhCChhHHHHHHHhcCcccccCchhhhhhHHHHHHH-cCCCchhhhh
Q 048516 139 DIVDIISSDPW--LLHRSAENQFQRSFLVLNS-VLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDILKN-CGVSSSQIVK 214 (389)
Q Consensus 139 ~i~~iv~~~P~--iL~~s~e~~L~p~~~fL~~-~g~s~~~v~~~l~~~P~lL~~sle~~l~p~v~~L~~-lGv~~~~I~~ 214 (389)
+|.+|-+-+-. -|.. -..+.|. |+. .|+|.++|+.+-..+--- .-+| .+..-.-.|++ .|++.++|..
T Consensus 248 qVVaIAsn~GGkQALea--V~~llP~---L~~~~gls~~qVVaIAsN~GGk--QALe-aV~~l~p~Lr~~~~ls~~qVVa 319 (463)
T 4hpz_A 248 QVVAIASNIGGKQALET--VQRLLPV---LCQDHGLTPDQVVAIASNDGGK--QALE-TVQRLLPVLCQDHGLTPEQVVA 319 (463)
T ss_dssp HHHHHHSSTTHHHHHHH--HHHHHHH---HHHTTCCCHHHHHHHHTSTTHH--HHHH-HHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHhcccchHHHHHH--HHhhchh---hhhccCCCHHHhhhhhcCccHH--HHHH-HHHHHhHHHHhhcCCCHHHhhh
Confidence 88777664421 1111 0122232 333 577777766655443110 0123 25555555655 6777777766
Q ss_pred hcccCcEeeeecchhHHHHHHHHHH-hCCCCCcccHHHHHHHHhcCC-----HHHHHHHHHHHHH-cCCCHHHHHHHHHc
Q 048516 215 YVYTYPTFFLYKPEKVRCFVQRVDE-IGFDRNSKMYLPAIRTMSSMT-----KEKWELKLKLFRS-LGFSEDNILSMFRS 287 (389)
Q Consensus 215 ll~~~P~il~~s~~~~~~~v~~l~~-lG~~~~~~~f~~a~~~~~~~s-----~~~~~~kv~~l~~-~G~s~~~v~~~~~~ 287 (389)
+-...-.- .-.|.+.+..-.+++ .|++..... .+.+.. -+.+..-.-.++. .|++.++|..+-..
T Consensus 320 IAsN~GGk--QALeaV~~llp~Lr~~~~ls~~qVv------aIAsn~GGkQALeaV~~llpvL~~a~gls~aqVVaIAsn 391 (463)
T 4hpz_A 320 IASNGGGK--QALETVQRLLPVLCQAHGLTPDQVV------AIASHDGGKQALETVQRLLPVLCQDHGLTPAQAVAIANN 391 (463)
T ss_dssp HHSSTTHH--HHHHHHHHHHHHHHHHSCCCHHHHH------HHHTSTTHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHSS
T ss_pred hhcCcchH--HHHHHHHHhhhhcchhccCCHHHhH------hhhhcCccHHHHHHHHHHhHHHHHHhCCCHHHhhhhhcc
Confidence 54332100 001223333334443 355443211 011100 1233344445563 78888887655432
Q ss_pred CCCccccCHHhHHHHHHHHhhccCCChhhHh
Q 048516 288 MPPAFTVSERKIRSVVETLLRRRDVDISSIV 318 (389)
Q Consensus 288 ~P~iL~~S~~~l~~k~~fL~~~mg~~~~~i~ 318 (389)
.-.- .--+.+.+..--|....|++..+|+
T Consensus 392 ~GGk--QALeaV~~llpvL~~a~gls~~qVV 420 (463)
T 4hpz_A 392 NGGK--QALETVQRLLPVLCQDHGLTPDQVV 420 (463)
T ss_dssp SSCH--HHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred CccH--HHHHHHHHhchhhhhhccCCHHHhh
Confidence 1000 0012333333444444577766654
No 44
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=60.53 E-value=10 Score=25.81 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHc
Q 048516 263 KWELKLKLFRSLGFSEDNILSMFRS 287 (389)
Q Consensus 263 ~~~~kv~~l~~~G~s~~~v~~~~~~ 287 (389)
-.+..|+-|.++||+++++.+++..
T Consensus 6 p~e~~Ia~L~smGfsr~da~~AL~i 30 (56)
T 2juj_A 6 QLSSEIENLMSQGYSYQDIQKALVI 30 (56)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHH
Confidence 4577899999999999999888753
No 45
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=59.47 E-value=11 Score=28.04 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhhcc
Q 048516 265 ELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRR 310 (389)
Q Consensus 265 ~~kv~~l~~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~m 310 (389)
+.+|+-|.+|||+++.+.+++...- -..+...++||.+++
T Consensus 30 e~~v~~L~~MGF~~~~a~~AL~~t~------n~n~e~A~ewL~~h~ 69 (84)
T 1vek_A 30 EEIVAQLVSMGFSQLHCQKAAINTS------NAGVEEAMNWLLSHM 69 (84)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT------TCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHc------CCCHHHHHHHHHhCC
Confidence 4566777788888888888876421 125778888998865
No 46
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=58.96 E-value=6.5 Score=26.48 Aligned_cols=42 Identities=14% Similarity=0.283 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHhCC-CCCcccHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHcCC
Q 048516 228 EKVRCFVQRVDEIGF-DRNSKMYLPAIRTMSSMTKEKWELKLKLFRSLGFSEDNILSMFRSMP 289 (389)
Q Consensus 228 ~~~~~~v~~l~~lG~-~~~~~~f~~a~~~~~~~s~~~~~~kv~~l~~~G~s~~~v~~~~~~~P 289 (389)
+.....++.|.+||| ++ +..+..|+..|+..+.....+..+|
T Consensus 10 ~~~~~~l~~L~~MGF~~~--------------------~~~~~AL~~t~gn~e~A~e~L~~~~ 52 (52)
T 2jy5_A 10 VRFQQQLEQLSAMGFLNR--------------------EANLQALIATGGDINAAIERLLGSS 52 (52)
T ss_dssp TTTHHHHHHHHHTTCCCH--------------------HHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHcCCCCH--------------------HHHHHHHHHhCCCHHHHHHHHHhCc
Confidence 467889999999999 54 2334566666777666555554443
No 47
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=57.86 E-value=21 Score=24.31 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHhCCCC
Q 048516 228 EKVRCFVQRVDEIGFDR 244 (389)
Q Consensus 228 ~~~~~~v~~l~~lG~~~ 244 (389)
|+....++.|.+|||..
T Consensus 7 e~~a~~L~~L~eMGF~D 23 (54)
T 2cp8_A 7 GQTAALMAHLFEMGFCD 23 (54)
T ss_dssp TTHHHHHHHHHHHTCCC
T ss_pred HhhHHHHHHHHHcCCCc
Confidence 45556667777777743
No 48
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=57.42 E-value=15 Score=24.24 Aligned_cols=18 Identities=11% Similarity=0.113 Sum_probs=8.3
Q ss_pred HHHhhhccCCCHHHHHHhh
Q 048516 57 ADYLINRQHFSPESASEAS 75 (389)
Q Consensus 57 ~~yLi~s~Gls~~~a~~~s 75 (389)
+.-|+ .+||++++|..|-
T Consensus 12 i~~L~-~MGF~~~~a~~AL 29 (49)
T 1ify_A 12 LTEIM-SMGYERERVVAAL 29 (49)
T ss_dssp HHHHH-HTTCCHHHHHHHH
T ss_pred HHHHH-HcCCCHHHHHHHH
Confidence 33443 3555555554443
No 49
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=56.05 E-value=11 Score=27.55 Aligned_cols=40 Identities=25% Similarity=0.529 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCC-HHHHHHHHHcCCCccccCHHhHHHHHHHHhh
Q 048516 262 EKWELKLKLFRSLGFS-EDNILSMFRSMPPAFTVSERKIRSVVETLLR 308 (389)
Q Consensus 262 ~~~~~kv~~l~~~G~s-~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~ 308 (389)
+.++.+|+-|++|||+ ++.+..+++. .-..+...++||..
T Consensus 27 ~~ye~qi~qL~eMGF~dr~~~~~AL~~-------t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 27 GRYQQELEELKALGFANRDANLQALVA-------TDGDIHAAIEMLLG 67 (74)
T ss_dssp TTSHHHHHHHHHHTCCCHHHHHHHHHH-------TTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHH-------hCCCHHHHHHHHHh
Confidence 3455666666666663 4554555442 22345566667665
No 50
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=54.20 E-value=14 Score=26.07 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=28.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhhcc
Q 048516 267 KLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRR 310 (389)
Q Consensus 267 kv~~l~~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~m 310 (389)
.|+-|.+|||+++.+.+++...-+ ..++..++||.+.+
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~n------~~~e~A~~wL~~h~ 49 (64)
T 2crn_A 12 LLEPLLAMGFPVHTALKALAATGR------KTAEEALAWLHDHC 49 (64)
T ss_dssp SHHHHHHTSCCHHHHHHHHHHHTS------CCHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCC------CCHHHHHHHHHhCC
Confidence 466778889999988888874321 25788899999865
No 51
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=53.23 E-value=17 Score=27.13 Aligned_cols=39 Identities=15% Similarity=0.353 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhhcc
Q 048516 265 ELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRR 310 (389)
Q Consensus 265 ~~kv~~l~~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~m 310 (389)
+++|+-|.++||+++.+.+++... -..+...++||.+++
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~-------n~n~e~A~ewL~~h~ 60 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSN-------NMNLDQAMSALLEKK 60 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT-------TSCHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc-------CCCHHHHHHHHHHCc
Confidence 678888999999999988888532 235888999999854
No 52
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=52.19 E-value=16 Score=24.57 Aligned_cols=38 Identities=24% Similarity=0.255 Sum_probs=22.4
Q ss_pred hHHHhhhccCCCHHHHHHhhccccCCCCCcChHHHHHHHHhCCC
Q 048516 56 LADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGF 99 (389)
Q Consensus 56 ~~~yLi~s~Gls~~~a~~~s~~~~~l~~~~~~~~vl~~L~~lGl 99 (389)
-+.-|+ +.|+|+++|.+|-+ .+..|.+-.-.+|.+..|
T Consensus 14 ~Ia~Lm-~mGFsr~~ai~AL~-----~a~nnve~AaniLlef~~ 51 (52)
T 2ooa_A 14 KIAKLM-GEGYAFEEVKRALE-----IAQNNVEVARSILREFAF 51 (52)
T ss_dssp HHHHHH-HTTCCHHHHHHHHH-----HTTTCHHHHHHHHHHHCC
T ss_pred HHHHHH-HcCCCHHHHHHHHH-----HhCCCHHHHHHHHHHhcC
Confidence 556666 57777777776644 233456655556655443
No 53
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=51.40 E-value=16 Score=23.77 Aligned_cols=41 Identities=24% Similarity=0.515 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHcCCC-HHHHHHHHHcCCCccccCHHhHHHHHHHHhh
Q 048516 261 KEKWELKLKLFRSLGFS-EDNILSMFRSMPPAFTVSERKIRSVVETLLR 308 (389)
Q Consensus 261 ~~~~~~kv~~l~~~G~s-~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~ 308 (389)
++.++.+++-|++|||+ ++.+..+++. +-..+...++||.+
T Consensus 4 ~~~~~~~i~~L~~MGF~d~~~~~~AL~~-------~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 4 EERYEHQLRQLNDMGFFDFDRNVAALRR-------SGGSVQGALDSLLN 45 (46)
T ss_dssp HHHTHHHHHHHHHTTCCCHHHHHHHHHH-------HTTCHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHH-------hCCCHHHHHHHHHc
Confidence 34567778888888875 4445555543 22245556666653
No 54
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=50.88 E-value=15 Score=26.22 Aligned_cols=41 Identities=12% Similarity=0.323 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHcCCCHHHH-HHHHHcCCCccccCHHhHHHHHHHHhh
Q 048516 261 KEKWELKLKLFRSLGFSEDNI-LSMFRSMPPAFTVSERKIRSVVETLLR 308 (389)
Q Consensus 261 ~~~~~~kv~~l~~~G~s~~~v-~~~~~~~P~iL~~S~~~l~~k~~fL~~ 308 (389)
++.++.+++-|++|||++.+- .++++. +-..+...++||.+
T Consensus 16 e~~y~~ql~qL~~MGF~d~~an~~AL~a-------t~Gnve~Ave~L~~ 57 (67)
T 2dna_A 16 EVRFSKEMECLQAMGFVNYNANLQALIA-------TDGDTNAAIYKLKS 57 (67)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHHHHHH-------TTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHH-------cCCCHHHHHHHHHh
Confidence 344556666666666644432 343332 22345666666665
No 55
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=50.79 E-value=14 Score=25.96 Aligned_cols=40 Identities=15% Similarity=0.271 Sum_probs=29.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhhccC
Q 048516 266 LKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRD 311 (389)
Q Consensus 266 ~kv~~l~~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~mg 311 (389)
.+|+-|.+|||+++.+.++++..- ...++..++||.+.+.
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~------~~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 11 TALESLIEMGFPRGRAEKALALTG------NQGIEAAMDWLMEHED 50 (64)
T ss_dssp CHHHHHHTTTCCHHHHHHHHHHHT------SCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhc------CCCHHHHHHHHHhCCC
Confidence 356777889999999888887421 1247888999988653
No 56
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=45.64 E-value=7.1 Score=25.70 Aligned_cols=37 Identities=16% Similarity=0.341 Sum_probs=24.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhhc
Q 048516 266 LKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRR 309 (389)
Q Consensus 266 ~kv~~l~~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~ 309 (389)
.+|+-|.++||++..+.+++..+- ......++||...
T Consensus 6 eaI~rL~~mGF~~~~a~~Al~a~~-------~n~e~A~~~Lf~~ 42 (47)
T 1dv0_A 6 EAIERLKALGFPESLVIQAYFACE-------KNENLAANFLLSQ 42 (47)
T ss_dssp HHHTTTTTTTCCHHHHHHHHTTTT-------SCHHHHHHHTTSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhC
Confidence 456677788888888877765432 2355566676653
No 57
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=43.27 E-value=31 Score=24.88 Aligned_cols=53 Identities=17% Similarity=0.376 Sum_probs=31.2
Q ss_pred HHHHHHhCCCCHHHHHHHHhcCCcccccccccchhhHH--HHHHHcCCChhhhhhHhh
Q 048516 90 VLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKI--KIFHEFGFSSSDIVDIIS 145 (389)
Q Consensus 90 vl~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~L~pkl--~fL~slG~s~~~i~~iv~ 145 (389)
.++||.+.|++.....+.-..+ -....++++.|-+ +.|+++|+..-||.+|+.
T Consensus 5 Wf~FFl~aGv~~~~c~rYA~~F---~~~ri~e~mL~Dl~~~~Lr~LGi~eGDIIrVmk 59 (72)
T 3idw_A 5 WFEFFLNCGVDVSNCQRYTINF---DREQLTEDMMPDINNSMLRTLGLREGDIVRVMK 59 (72)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH---HHTTCCGGGGGGCCHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHH---HHccCCHHHHhhCCHHHHHHcCCchhhHHHHHH
Confidence 5678888888876554322211 1123444566654 578888887666666543
No 58
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=42.27 E-value=43 Score=22.32 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=8.4
Q ss_pred HHHHHhCCC-CHHHHHHHH
Q 048516 91 LSFLRESGF-SSTHIEKMV 108 (389)
Q Consensus 91 l~~L~~lGl-s~~~i~~iv 108 (389)
++-|.++|| +.....+++
T Consensus 15 l~~L~~MGF~~~~~~~~AL 33 (53)
T 2knz_A 15 LEQLNSMGFINREANLQAL 33 (53)
T ss_dssp HHHHHTTTCCCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHH
Confidence 445555555 444434333
No 59
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=41.23 E-value=34 Score=26.54 Aligned_cols=43 Identities=16% Similarity=0.312 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHc-CCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhhc
Q 048516 260 TKEKWELKLKLFRSL-GFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRR 309 (389)
Q Consensus 260 s~~~~~~kv~~l~~~-G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~ 309 (389)
+...++++|+.+.++ ||+++++..++..+=. .+...+++|.+.
T Consensus 35 ~d~d~eekVk~L~EmtG~seeeAr~AL~~~ng-------Dl~~AI~~Lleg 78 (104)
T 1wj7_A 35 NDADFEEKVKQLIDITGKNQDECVIALHDCNG-------DVNRAINVLLEG 78 (104)
T ss_dssp CCHHHHHHHHHHHHHTCCCHHHHHHHHHHHTS-------CHHHHHHHHHTC
T ss_pred CcccHHHHHHHHHHhhCCCHHHHHHHHHHcCC-------CHHHHHHHHHhC
Confidence 455688999999988 9999999988865321 466778888874
No 60
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=39.60 E-value=60 Score=26.95 Aligned_cols=92 Identities=11% Similarity=0.017 Sum_probs=0.0
Q ss_pred chHHHhhhccCCCHHHHHHhhccccCCCCCcChHHHHHHHHhCCCCHHHHHHHH----------------hcCCcccccc
Q 048516 55 DLADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIEKMV----------------AKKPNILLIN 118 (389)
Q Consensus 55 ~~~~yLi~s~Gls~~~a~~~s~~~~~l~~~~~~~~vl~~L~~lGls~~~i~~iv----------------~~~P~lL~~~ 118 (389)
+++++|. ..|+=.+..-.-+--.........+..+.+-|+.-|++.+.|..++ +++.. -..+
T Consensus 53 ~vl~~l~-~~g~ldD~rfA~~~v~~~~~~~~G~~~I~~eL~~KGI~~~~I~~al~~~~~de~e~a~~l~~Kk~~~-~~~~ 130 (162)
T 3dfg_A 53 AAVERLA-GEGWQDDVRFAASVVRNRASSGYGPLHIRAELGTHGLDSDAVSAAMATFEGDWTENALDLIRRRFGE-DGPV 130 (162)
T ss_dssp HHHHHHH-HTTSCCHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTCCHHHHHHHHTTCCSCHHHHHHHHHHHHHCT-TCCC
T ss_pred HHHHHHH-HcCCCCHHHHHHHHHHHHHHccccHHHHHHHHHHcCCCHHHHHHHHHhCcHhHHHHHHHHHHHhcCC-CCCC
Q ss_pred cccchhhHHHHHHHcCCChhhhhhHhhcCc
Q 048516 119 LHNTLKPKIKIFHEFGFSSSDIVDIISSDP 148 (389)
Q Consensus 119 ~~~~L~pkl~fL~slG~s~~~i~~iv~~~P 148 (389)
..+.-.-.++||...||+.+.|..++...|
T Consensus 131 ~~~~k~K~~~~L~rrGF~~~~I~~~l~~~~ 160 (162)
T 3dfg_A 131 DLAQRRKAADLLARRGFDGNSIRLATRFDL 160 (162)
T ss_dssp SHHHHHHHHHHHHHTTCCHHHHHHHTTC--
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHhcCc
No 61
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=38.87 E-value=58 Score=21.86 Aligned_cols=15 Identities=33% Similarity=0.720 Sum_probs=7.3
Q ss_pred HHHHHHHHHcCCCHH
Q 048516 265 ELKLKLFRSLGFSED 279 (389)
Q Consensus 265 ~~kv~~l~~~G~s~~ 279 (389)
+++++-|++|||+++
T Consensus 10 ~~~l~~L~~MGF~d~ 24 (54)
T 2dah_A 10 QVQLEQLRSMGFLNR 24 (54)
T ss_dssp HHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHcCCCcH
Confidence 444555555555443
No 62
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=38.39 E-value=80 Score=21.56 Aligned_cols=17 Identities=18% Similarity=0.481 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHhCCCC
Q 048516 228 EKVRCFVQRVDEIGFDR 244 (389)
Q Consensus 228 ~~~~~~v~~l~~lG~~~ 244 (389)
++....++.+.+|||..
T Consensus 15 ~~~~~qi~~L~~MGF~d 31 (58)
T 1wr1_B 15 ERYEHQLRQLNDMGFFD 31 (58)
T ss_dssp HHTHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHcCCCc
Confidence 46788999999999954
No 63
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=37.83 E-value=21 Score=24.94 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=28.0
Q ss_pred HHcCCCchhhhhhcccCcEeeeecchhHHHHHHHHHHhCCCCCc
Q 048516 203 KNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEIGFDRNS 246 (389)
Q Consensus 203 ~~lGv~~~~I~~ll~~~P~il~~s~~~~~~~v~~l~~lG~~~~~ 246 (389)
+.+|++..-|.+++...+.-...+++..+...+.++++|+.|+.
T Consensus 8 ~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~ 51 (65)
T 1uxc_A 8 RLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNA 51 (65)
T ss_dssp HHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC-
T ss_pred HHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccH
Confidence 45788888888887765511123455555666667788887764
No 64
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=37.21 E-value=81 Score=23.41 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=21.4
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHhcCCc
Q 048516 87 SDSVLSFLRESGFSSTHIEKMVAKKPN 113 (389)
Q Consensus 87 ~~~vl~~L~~lGls~~~i~~iv~~~P~ 113 (389)
...+-.|-+.+|+|+.+|..|-..+|+
T Consensus 12 ~~~wK~~~R~LGlse~~Id~I~~~~~~ 38 (86)
T 3oq9_A 12 IQEAKKFARENNIKEGKIDEIMHDSIQ 38 (86)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHcCCCHhHHHHHHHhCCC
Confidence 455677788888888888888888875
No 65
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=35.45 E-value=36 Score=23.74 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=20.5
Q ss_pred hHHHhhhccCCCHHHHHHhhccccCCCCCcChHHHHHHHHh
Q 048516 56 LADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRE 96 (389)
Q Consensus 56 ~~~yLi~s~Gls~~~a~~~s~~~~~l~~~~~~~~vl~~L~~ 96 (389)
.+.-|+ .+||++++|.+|-+ .+..|++..++||-+
T Consensus 12 ~I~~L~-~MGF~~~~a~~AL~-----~~~~nve~A~e~L~~ 46 (63)
T 1wji_A 12 ALKHIT-EMGFSKEASRQALM-----DNGNNLEAALNVLLT 46 (63)
T ss_dssp HHHHHH-TTTCCHHHHHHHHH-----HTTSCHHHHHHHHHH
T ss_pred HHHHHH-HcCCCHHHHHHHHH-----HhCCCHHHHHHHHHH
Confidence 556665 47777777666544 122356666666644
No 66
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=33.80 E-value=45 Score=23.28 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=27.3
Q ss_pred hHHHhhhccCCCHHHHHHhhccccCCCCCcChHHHHHHHHhCC
Q 048516 56 LADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESG 98 (389)
Q Consensus 56 ~~~yLi~s~Gls~~~a~~~s~~~~~l~~~~~~~~vl~~L~~lG 98 (389)
++.-|+ ..||+++.|.+|.+ . ....+++..+.||-++.
T Consensus 12 ~v~~L~-~MGF~~~~a~~AL~-~---t~n~~~e~A~~wL~~h~ 49 (64)
T 2crn_A 12 LLEPLL-AMGFPVHTALKALA-A---TGRKTAEEALAWLHDHC 49 (64)
T ss_dssp SHHHHH-HTSCCHHHHHHHHH-H---HTSCCHHHHHHHHHHHS
T ss_pred HHHHHH-HcCCCHHHHHHHHH-H---hCCCCHHHHHHHHHhCC
Confidence 778888 49999998888755 1 11247888888886544
No 67
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=33.75 E-value=35 Score=27.11 Aligned_cols=40 Identities=13% Similarity=0.398 Sum_probs=28.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhhccC
Q 048516 265 ELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRD 311 (389)
Q Consensus 265 ~~kv~~l~~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~mg 311 (389)
+.+|+-|.++||+++++.++++.. ...+...++||.+.++
T Consensus 79 e~~v~~L~~MGF~~~~a~~AL~~~-------~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 79 EEIVAIITSMGFQRNQAIQALRAT-------NNNLERALDWIFSHPE 118 (126)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHH-------TSCHHHHHHHHHTCCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc-------CCCHHHHHHHHHhCCC
Confidence 455677778888888888888753 1246778888888655
No 68
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=33.44 E-value=60 Score=23.39 Aligned_cols=35 Identities=11% Similarity=0.133 Sum_probs=20.6
Q ss_pred hHHHhhhccCCCHHHHHHhhccccCCCCCcChHHHHHHHHh
Q 048516 56 LADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRE 96 (389)
Q Consensus 56 ~~~yLi~s~Gls~~~a~~~s~~~~~l~~~~~~~~vl~~L~~ 96 (389)
.+.-|+ ..||++++|..|-+ ....|++..++||-+
T Consensus 32 ~I~~L~-eMGF~r~~a~~AL~-----~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 32 QIQKLV-AMGFDRTQVEVALA-----AADDDLTVAVEILMS 66 (73)
T ss_dssp HHHHHH-TTTCCHHHHHHHHH-----HHTSCHHHHHHHHHT
T ss_pred HHHHHH-HcCCCHHHHHHHHH-----HhCCCHHHHHHHHHH
Confidence 455665 46777777666644 223466666666644
No 69
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=32.91 E-value=76 Score=21.99 Aligned_cols=46 Identities=13% Similarity=0.270 Sum_probs=30.5
Q ss_pred HHcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhhccCCChhhHh
Q 048516 272 RSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRDVDISSIV 318 (389)
Q Consensus 272 ~~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~mg~~~~~i~ 318 (389)
+..|+|...|..++...+.-...|++..++..+...+ +|+.+...+
T Consensus 8 ~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~-lgY~pn~~a 53 (65)
T 1uxc_A 8 RLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVRE-HNYHPNAVA 53 (65)
T ss_dssp HHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHH-HTCCCC---
T ss_pred HHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH-hCCCccHHH
Confidence 4689999999999988773234676666555555554 888766554
No 70
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=32.84 E-value=51 Score=23.05 Aligned_cols=43 Identities=9% Similarity=0.139 Sum_probs=30.6
Q ss_pred HHHHcCCCchhhhhhcccCcEeeeecchhHHHHHHHHHHhCCCCCc
Q 048516 201 ILKNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEIGFDRNS 246 (389)
Q Consensus 201 ~L~~lGv~~~~I~~ll~~~P~il~~s~~~~~~~v~~l~~lG~~~~~ 246 (389)
.=+..|++..-|.+++...|. .+++..+...+.++++|+.++.
T Consensus 15 iA~~aGVS~sTVSr~ln~~~~---vs~~t~~rV~~~a~~lgY~pn~ 57 (67)
T 2l8n_A 15 VALKAKVSTATVSRALMNPDK---VSQATRNRVEKAAREVGYLPQP 57 (67)
T ss_dssp HHHHTTCCHHHHHHTTTCCCC---SCHHHHHHHHHHHHHHCCCC--
T ss_pred HHHHHCCCHHHHHHHHcCCCC---CCHHHHHHHHHHHHHhCCCccH
Confidence 335589999999998877664 2555666666778889998763
No 71
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=32.59 E-value=43 Score=24.07 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=22.4
Q ss_pred hHHHhhhccCCCHHHHHHhhccccCCCCCcChHHHHHHHHhC
Q 048516 56 LADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRES 97 (389)
Q Consensus 56 ~~~yLi~s~Gls~~~a~~~s~~~~~l~~~~~~~~vl~~L~~l 97 (389)
.+.-|+ .+||++++|.+|-+ .+..|++..+.||-+.
T Consensus 32 ~v~~L~-~MGF~~~~a~~AL~-----~t~~nve~Ave~L~~~ 67 (73)
T 1wiv_A 32 SVDTLL-SFGFAEDVARKALK-----ASGGDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHH-HHTCCHHHHHHHHH-----HTTSCHHHHHHHHHHS
T ss_pred HHHHHH-HcCCCHHHHHHHHH-----HhCCCHHHHHHHHHhC
Confidence 566676 57777777776654 1224677667776543
No 72
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.33 E-value=32 Score=23.83 Aligned_cols=35 Identities=11% Similarity=0.202 Sum_probs=23.8
Q ss_pred hHHHhhhccCCCHHHHHHhhccccCCCCCcChHHHHHHHHh
Q 048516 56 LADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRE 96 (389)
Q Consensus 56 ~~~yLi~s~Gls~~~a~~~s~~~~~l~~~~~~~~vl~~L~~ 96 (389)
.+.-|+ .+||++++|.+|-+ . +..+++..+.||-+
T Consensus 12 ~v~~L~-~MGF~~~~a~~AL~-~----t~~nve~A~e~L~~ 46 (63)
T 2dak_A 12 CVTTIV-SMGFSRDQALKALR-A----TNNSLERAVDWIFS 46 (63)
T ss_dssp HHHHHH-HHTCCHHHHHHHHH-H----TTSCSHHHHHHHHH
T ss_pred HHHHHH-HcCCCHHHHHHHHH-H----cCCCHHHHHHHHHh
Confidence 677777 48888888887755 1 22367777777743
No 73
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=32.31 E-value=60 Score=27.42 Aligned_cols=22 Identities=14% Similarity=-0.195 Sum_probs=15.4
Q ss_pred HHHHHHHHhhCChhHHHHHHHh
Q 048516 161 RSFLVLNSVLGSNAGVCKAIKA 182 (389)
Q Consensus 161 p~~~fL~~~g~s~~~v~~~l~~ 182 (389)
-.+.||..-|++.+.|..++..
T Consensus 141 K~~~~L~rrGF~~~~I~~vl~~ 162 (177)
T 3e3v_A 141 KIKQSLLTKGFSYDIIDTIIQE 162 (177)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHH
Confidence 3456888888887777777654
No 74
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=32.04 E-value=92 Score=24.36 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=8.7
Q ss_pred HcCCChhhhhhHhhcCc
Q 048516 132 EFGFSSSDIVDIISSDP 148 (389)
Q Consensus 132 slG~s~~~i~~iv~~~P 148 (389)
.+|++..+|..|-..+|
T Consensus 44 ~LGlse~dId~I~~~~p 60 (115)
T 2o71_A 44 SLGLSQTDIYRCKANHP 60 (115)
T ss_dssp HTTCCHHHHHHHHHHCT
T ss_pred HcCCCHHHHHHHHHHCC
Confidence 34555555555555554
No 75
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=31.96 E-value=1.2e+02 Score=21.85 Aligned_cols=18 Identities=11% Similarity=0.337 Sum_probs=14.7
Q ss_pred chhHHHHHHHHHHhCCCC
Q 048516 227 PEKVRCFVQRVDEIGFDR 244 (389)
Q Consensus 227 ~~~~~~~v~~l~~lG~~~ 244 (389)
.++..+.++.|.+|||..
T Consensus 26 e~~ye~qi~qL~eMGF~d 43 (74)
T 1vej_A 26 EGRYQQELEELKALGFAN 43 (74)
T ss_dssp TTTSHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHcCCCc
Confidence 346888999999999943
No 76
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=31.37 E-value=43 Score=23.25 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=20.2
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHhc
Q 048516 87 SDSVLSFLRESGFSSTHIEKMVAK 110 (389)
Q Consensus 87 ~~~vl~~L~~lGls~~~i~~iv~~ 110 (389)
.+.+++-|.++|++..++.+++..
T Consensus 17 ~~ea~~AL~aLGY~~~ea~kav~~ 40 (62)
T 1ixs_A 17 AEEAVMALAALGFKEAQARAVVLD 40 (62)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 356788889999999999998876
No 77
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=31.24 E-value=34 Score=27.71 Aligned_cols=55 Identities=11% Similarity=0.217 Sum_probs=32.8
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHhcCCcccccccccchhhHHHHHH-HcCCChhhhhhHhh
Q 048516 87 SDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFH-EFGFSSSDIVDIIS 145 (389)
Q Consensus 87 ~~~vl~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~L~pkl~fL~-slG~s~~~i~~iv~ 145 (389)
|...+...+.+|+++.|..-++. |.....+..-.|..+.|. .+|++.+++.+++.
T Consensus 18 p~~LL~~y~~LgLs~~E~~lLl~----L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~ 73 (135)
T 2v79_A 18 PNLLLTHYKQLGLNETELILLLK----IKMHLEKGSYFPTPNQLQEGMSISVEECTNRLR 73 (135)
T ss_dssp EHHHHHHHHHHTCCHHHHHHHHH----HHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHH----HHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 56667777888888888665442 222222333445566666 56777776666554
No 78
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=29.52 E-value=42 Score=29.05 Aligned_cols=27 Identities=15% Similarity=0.417 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHcC
Q 048516 262 EKWELKLKLFRSLGFSEDNILSMFRSM 288 (389)
Q Consensus 262 ~~~~~kv~~l~~~G~s~~~v~~~~~~~ 288 (389)
...++||+-|.++||+++++..++.++
T Consensus 161 ~~~eekV~~l~~MGf~~~~a~~AL~~~ 187 (201)
T 3k9o_A 161 PEYTKKIENLCAMGFDRNAVIVALSSK 187 (201)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHT
T ss_pred chhHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 345788888888888888888877765
No 79
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=29.51 E-value=48 Score=23.10 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=26.0
Q ss_pred hHHHhhhccCCCHHHHHHhhccccCCCCC-cChHHHHHHHHhC
Q 048516 56 LADYLINRQHFSPESASEASSLNFSLKDT-ENSDSVLSFLRES 97 (389)
Q Consensus 56 ~~~yLi~s~Gls~~~a~~~s~~~~~l~~~-~~~~~vl~~L~~l 97 (389)
.+.-|+ .+||++++|.+|-+ .+. .+++..++||-++
T Consensus 22 ~i~~L~-~MGF~~~~a~~AL~-----~t~~~nve~A~ewL~~~ 58 (64)
T 2cpw_A 22 ALDVLL-SMGFPRARAQKALA-----STGGRSVQTACDWLFSH 58 (64)
T ss_dssp HHHHHH-HHTCCHHHHHHHHH-----HTTTSCHHHHHHHHHSC
T ss_pred HHHHHH-HcCCCHHHHHHHHH-----HcCCCCHHHHHHHHHhC
Confidence 678887 48999988888755 222 3788888888654
No 80
>2c35_A Human RPB4, DNA-directed RNA polymerase II 16 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: a.60.8.2
Probab=28.91 E-value=47 Score=27.52 Aligned_cols=30 Identities=20% Similarity=0.218 Sum_probs=14.3
Q ss_pred CCcChHHHHHHHHhCCCCHHHHHHHHhcCC
Q 048516 83 DTENSDSVLSFLRESGFSSTHIEKMVAKKP 112 (389)
Q Consensus 83 ~~~~~~~vl~~L~~lGls~~~i~~iv~~~P 112 (389)
+++....++..|.++|+++.++..|+.-+|
T Consensus 86 ~~e~~~~l~e~L~~~~L~~~E~a~L~NL~P 115 (152)
T 2c35_A 86 NRETIASVRSLLLQKKLHKFELACLANLCP 115 (152)
T ss_dssp SHHHHHHHHHHHHTSSCCHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhcCCCHHHHHHhccCCC
Confidence 334444444444455555555555544444
No 81
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=28.55 E-value=50 Score=27.33 Aligned_cols=59 Identities=15% Similarity=0.247 Sum_probs=32.7
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHhcCCcccccccccchhhHHHHHHHcCCCh---hhhhhHhhc
Q 048516 87 SDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFSS---SDIVDIISS 146 (389)
Q Consensus 87 ~~~vl~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~L~pkl~fL~slG~s~---~~i~~iv~~ 146 (389)
.+..+.=|..-|++++||.-+++..=.+=....- +=.-..+.|.+.|+.+ +|+-.++.+
T Consensus 35 Ve~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~v-tG~kI~rILk~~glapeiPEDL~~LikK 96 (153)
T 2xzm_O 35 VVDLSVKLAKKGLTPSQIGVILRDQHGIPQVRFL-TGQKILRILKKNGCAPQLPEDLYFLIKK 96 (153)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHSSCCSCHHHH-HSSCHHHHHHHTTCCCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHhhhHHhhcCCCCCeeee-ccchHHHHHHHcCCCCCCcHHHHHHHHH
Confidence 3334444677899999999888765222111100 1112356778888763 455444443
No 82
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=28.35 E-value=1.1e+02 Score=21.33 Aligned_cols=24 Identities=8% Similarity=0.230 Sum_probs=15.4
Q ss_pred CHHhHHHHHHHHhhccCCChhhHh
Q 048516 295 SERKIRSVVETLLRRRDVDISSIV 318 (389)
Q Consensus 295 S~~~l~~k~~fL~~~mg~~~~~i~ 318 (389)
+.+.+....+.|-..+|++.+++.
T Consensus 51 ~~~~l~~~~~~l~~~~~v~~~~l~ 74 (84)
T 2ef8_A 51 DALELFELLEVVASRLGLPMDILL 74 (84)
T ss_dssp BHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHHHHHHccccCCCHHHHH
Confidence 445555666666666688877765
No 83
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=28.27 E-value=86 Score=25.93 Aligned_cols=74 Identities=15% Similarity=0.087 Sum_probs=42.1
Q ss_pred cCCChhhhhhHhhcCcccccccchhhhHHHHHHHHHhhCChhHHHHHHHhcCcccccCchhhhhhHHHHHHHcCCCc
Q 048516 133 FGFSSSDIVDIISSDPWLLHRSAENQFQRSFLVLNSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDILKNCGVSS 209 (389)
Q Consensus 133 lG~s~~~i~~iv~~~P~iL~~s~e~~L~p~~~fL~~~g~s~~~v~~~l~~~P~lL~~sle~~l~p~v~~L~~lGv~~ 209 (389)
.|.|.+... .-...|..+..+.| .+...+-=|..-|.+..+|+-++.-...+-....-. =+....+|++.|+..
T Consensus 11 kG~S~S~~P-~~~~~P~W~~~~~e-eVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vt-G~kI~rILk~~glap 84 (153)
T 2xzm_O 11 KGISGSALP-FKRRSPKWLHMTPS-TVVDLSVKLAKKGLTPSQIGVILRDQHGIPQVRFLT-GQKILRILKKNGCAP 84 (153)
T ss_dssp CCCCCCCCC-SCCSCCSSCCCCHH-HHHHHHHHHHHTTCCHHHHHHHHHHSSCCSCHHHHH-SSCHHHHHHHTTCCC
T ss_pred CCccCCCCC-CCCCCCccccCCHH-HHHHHHHHHHHCCCCHHHhhhHHhhcCCCCCeeeec-cchHHHHHHHcCCCC
Confidence 455555433 22346777777765 566666666777777777777776654444332111 133445666666554
No 84
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.01 E-value=45 Score=24.77 Aligned_cols=37 Identities=30% Similarity=0.276 Sum_probs=19.6
Q ss_pred HHHhhhccCCCHHHHHHhhccccCCCCCcChHHHHHHHHhCCC
Q 048516 57 ADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGF 99 (389)
Q Consensus 57 ~~yLi~s~Gls~~~a~~~s~~~~~l~~~~~~~~vl~~L~~lGl 99 (389)
+.-|+ ..||++++|.+|-+ ....+++..+.||-++..
T Consensus 25 I~qL~-~MGF~~~~a~~AL~-----~~n~n~e~A~ewL~~h~~ 61 (85)
T 2dkl_A 25 IKQLT-DMGFPREPAEEALK-----SNNMNLDQAMSALLEKKV 61 (85)
T ss_dssp HHHHH-HHTCCHHHHHHHHH-----HTTSCHHHHHHHHHTTSC
T ss_pred HHHHH-HcCCCHHHHHHHHH-----HcCCCHHHHHHHHHHCcC
Confidence 44455 36666666665532 222456666666655443
No 85
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=27.81 E-value=43 Score=27.68 Aligned_cols=57 Identities=12% Similarity=0.216 Sum_probs=31.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHhcCCcccccccccchhhHHHHHHHcCCCh---hhhhhHhh
Q 048516 88 DSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFSS---SDIVDIIS 145 (389)
Q Consensus 88 ~~vl~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~L~pkl~fL~slG~s~---~~i~~iv~ 145 (389)
+..+.=|..-|++++||.-+++..=.+=....- +=.-..+.|.+.|+.+ +|+-.+|.
T Consensus 34 e~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~v-tG~kI~rILk~~glapeiPEDL~~Lik 93 (151)
T 3u5c_N 34 IEQIVKYARKGLTPSQIGVLLRDAHGVTQARVI-TGNKIMRILKSNGLAPEIPEDLYYLIK 93 (151)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTCSCHHHH-SSSCHHHHHHHTTCCCSSCHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHhhhHHhccCCCCCeeee-cccHHHHHHHhCCCCCCCcHHHHHHHH
Confidence 333444667899999999888764222111100 1112356777888763 44444443
No 86
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=27.64 E-value=2.7e+02 Score=23.23 Aligned_cols=81 Identities=6% Similarity=0.100 Sum_probs=43.9
Q ss_pred HHHHHcCCCchhhhhhcccCcEeeeecchhHHHHHHHHHHhCCCCCcc---cHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048516 200 DILKNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEIGFDRNSK---MYLPAIRTMSSMTKEKWELKLKLFRSLGF 276 (389)
Q Consensus 200 ~~L~~lGv~~~~I~~ll~~~P~il~~s~~~~~~~v~~l~~lG~~~~~~---~f~~a~~~~~~~s~~~~~~kv~~l~~~G~ 276 (389)
.+|..-.-+..++..-|... +++++-+...++++.+.|+-.+.. .|++.-......++..++.. |+.=|+
T Consensus 26 ~~Ls~r~~S~~EL~~KL~~k----g~~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~~~I~~e---L~~KGI 98 (177)
T 3e3v_A 26 NYLSYQLRTRKEVEDKLRSL----DIHEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGPKVIKLN---LSKKGI 98 (177)
T ss_dssp HHHHSSCCCHHHHHTTSGGG----TCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCHHHHHHH---HHTTTC
T ss_pred HHhccccccHHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccHHHHHHH---HHHcCC
Confidence 33333444555555444432 344566777888888888764431 23332222222344444332 456788
Q ss_pred CHHHHHHHHHc
Q 048516 277 SEDNILSMFRS 287 (389)
Q Consensus 277 s~~~v~~~~~~ 287 (389)
+.+.|..++..
T Consensus 99 ~~~~I~~al~~ 109 (177)
T 3e3v_A 99 DDNIAEDALIL 109 (177)
T ss_dssp CHHHHHHHHTT
T ss_pred CHHHHHHHHHh
Confidence 88888887754
No 87
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 4gjr_A* 4gg4_A* 4gjp_A* 3v6p_A 2kq5_A
Probab=25.56 E-value=62 Score=31.34 Aligned_cols=12 Identities=8% Similarity=0.340 Sum_probs=6.7
Q ss_pred cCCCHHHHHHhh
Q 048516 64 QHFSPESASEAS 75 (389)
Q Consensus 64 ~Gls~~~a~~~s 75 (389)
+|||+++..++.
T Consensus 99 ~gLs~~qVVaIA 110 (499)
T 3v6t_A 99 HGLTPQQVVAIA 110 (499)
T ss_dssp SCCCHHHHHHHH
T ss_pred cCCCHHHhhhhh
Confidence 556666655543
No 88
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=25.48 E-value=38 Score=24.86 Aligned_cols=48 Identities=21% Similarity=0.354 Sum_probs=35.4
Q ss_pred ChHHHHHHHHhCCCCHHHHHHHHhcCCcccccccccchhhHHHHHHHcCCChhhhhhHhhcCcc
Q 048516 86 NSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFSSSDIVDIISSDPW 149 (389)
Q Consensus 86 ~~~~vl~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~L~pkl~fL~slG~s~~~i~~iv~~~P~ 149 (389)
.++..-++|+.+++.++|+ |+++..||- .+.+|+.+.|+.+|+...+.
T Consensus 16 s~eEk~~lL~~y~i~~~qL-------PrI~~~DPv---------ar~~G~k~GdVvkI~R~S~t 63 (78)
T 1hmj_A 16 PKEEVEEILKRYNIKIQQL-------PKIYEDDPV---------IQEIGAKEGDVVRVIRKSPT 63 (78)
T ss_pred CHHHHHHHHHHcCCCHHHC-------CeeeCcCHh---------hHHhCCCCCCEEEEEECCCC
Confidence 4567788899999998874 566666643 25678888888888877654
No 89
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=25.43 E-value=1.1e+02 Score=19.22 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHH
Q 048516 263 KWELKLKLFRSLGFSEDNILSM 284 (389)
Q Consensus 263 ~~~~kv~~l~~~G~s~~~v~~~ 284 (389)
.++.-++.+++-|||.+++..+
T Consensus 4 alkselqalkkegfspeelaal 25 (48)
T 1g6u_A 4 ALKSELQALKKEGFSPEELAAL 25 (48)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHH
Confidence 3456677888889999987543
No 90
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=25.18 E-value=95 Score=24.45 Aligned_cols=28 Identities=18% Similarity=0.406 Sum_probs=23.0
Q ss_pred ChHHHHHHHHhCCCCHHHHHHHHhcCCc
Q 048516 86 NSDSVLSFLRESGFSSTHIEKMVAKKPN 113 (389)
Q Consensus 86 ~~~~vl~~L~~lGls~~~i~~iv~~~P~ 113 (389)
....+-.|-+.+|+++.+|..|-..+|+
T Consensus 19 ~~~~wK~laR~LGlse~~Id~I~~d~~~ 46 (115)
T 3ezq_A 19 TLSQVKGFVRKNGVNEAKIDEIKNDNVQ 46 (115)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHCSS
T ss_pred CHHHHHHHHHHcCCCHhhHHHHHHcCCC
Confidence 3466778888999999999999888875
No 91
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=25.16 E-value=75 Score=21.95 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHcC
Q 048516 263 KWELKLKLFRSLGFSEDNILSMFRSM 288 (389)
Q Consensus 263 ~~~~kv~~l~~~G~s~~~v~~~~~~~ 288 (389)
..++-++-|..+||++.|+..++.+.
T Consensus 16 ~~~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 16 AAEEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34667788889999999999888764
No 92
>1wlq_C CDT1 protein; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_C*
Probab=25.07 E-value=50 Score=28.78 Aligned_cols=68 Identities=9% Similarity=0.137 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHhhCChhHHHHHHHhcCcccccCchhhhhhHHHHHHHcCCCchhhhhhcccCcEeeeecch
Q 048516 158 QFQRSFLVLNSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYTYPTFFLYKPE 228 (389)
Q Consensus 158 ~L~p~~~fL~~~g~s~~~v~~~l~~~P~lL~~sle~~l~p~v~~L~~lGv~~~~I~~ll~~~P~il~~s~~ 228 (389)
.|-.+++.|.+++-.-+.++.++...-...+++ +|+++|+-+-.--++.+.++++..-+|.....+.+
T Consensus 31 ~LP~kY~~L~e~F~~ldtv~~ml~~R~~~~Tf~---~ik~~VE~~trr~F~~~hLaQIk~IyPeay~l~~~ 98 (201)
T 1wlq_C 31 VLPYKYQVLVEMFHSMDTIVSMLHNRSETVTFA---KVKQGVQEMMRKRFEERNVGQIKTVYPMSYRFRQE 98 (201)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHTTCCCBHH---HHHHHHHHHHTSCCCHHHHHHHHHHCTTSEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHcCCccccHH---HHHHHHHHHhcCCcCHHHHHHHHHhccCceEEEee
Confidence 356688889988888888899998887877775 59999999998899999999998888887776654
No 93
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=24.45 E-value=68 Score=23.79 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=19.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHc
Q 048516 265 ELKLKLFRSLGFSEDNILSMFRS 287 (389)
Q Consensus 265 ~~kv~~l~~~G~s~~~v~~~~~~ 287 (389)
-..|..++++|||-+||..++.-
T Consensus 6 L~~I~~lr~lGfsL~eIk~~l~~ 28 (99)
T 1q08_A 6 LKFIRHARQLGFSLESIRELLSI 28 (99)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHH
Confidence 45677889999999999999863
No 94
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=24.33 E-value=54 Score=24.28 Aligned_cols=34 Identities=18% Similarity=0.019 Sum_probs=18.7
Q ss_pred hHHHhhhccCCCHHHHHHhhccccCCCCCcChHHHHHHHH
Q 048516 56 LADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLR 95 (389)
Q Consensus 56 ~~~yLi~s~Gls~~~a~~~s~~~~~l~~~~~~~~vl~~L~ 95 (389)
.+.-|+ ..||++++|.+|-+ .+..+++..++||-
T Consensus 32 ~I~~Lv-~MGF~~~~A~~AL~-----~t~gdve~A~e~L~ 65 (83)
T 1veg_A 32 SINQLV-YMGFDTVVAEAALR-----VFGGNVQLAAQTLA 65 (83)
T ss_dssp HHHHHH-HHSCCHHHHHHHHH-----HTTTCHHHHHHHHH
T ss_pred HHHHHH-HcCCCHHHHHHHHH-----HcCCCHHHHHHHHH
Confidence 555665 46666666666544 22234665565553
No 95
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=23.84 E-value=74 Score=24.96 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=16.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHhcCCc
Q 048516 89 SVLSFLRESGFSSTHIEKMVAKKPN 113 (389)
Q Consensus 89 ~vl~~L~~lGls~~~i~~iv~~~P~ 113 (389)
.+-.|.+.+|+++.+|..|-..+|+
T Consensus 27 ~WK~~aRkLGLse~~Id~Ie~~~~r 51 (112)
T 1ich_A 27 RWKEFVKRLGLSDHEIDRLELQNGR 51 (112)
T ss_dssp THHHHHHHHTCCHHHHHHHHHHCCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHCcC
Confidence 3455667777777777777666664
No 96
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.05 E-value=62 Score=23.87 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=17.1
Q ss_pred hHHHhhhccCCCHHHHHHhhccccCCCCCcChHHHHHHHHh
Q 048516 56 LADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRE 96 (389)
Q Consensus 56 ~~~yLi~s~Gls~~~a~~~s~~~~~l~~~~~~~~vl~~L~~ 96 (389)
.+.-|+ .+||+.++|.+|-+ .+..+++..+.||-+
T Consensus 32 ~i~~L~-~MGF~~~~a~~AL~-----~t~~nve~A~ewL~~ 66 (83)
T 2dai_A 32 ALRQLT-EMGFPENRATKALQ-----LNHMSVPQAMEWLIE 66 (83)
T ss_dssp HHHHHH-HHTCCHHHHHHHHH-----HTTSCHHHHHHHHHH
T ss_pred HHHHHH-HcCCCHHHHHHHHH-----HhCCCHHHHHHHHHH
Confidence 445555 35666655555543 112345555555543
No 97
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=22.60 E-value=1e+02 Score=26.49 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHhCCCCCcccHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHH
Q 048516 228 EKVRCFVQRVDEIGFDRNSKMYLPAIRTMSSMTKEKWELKLKLFRSLGFSEDNILSM 284 (389)
Q Consensus 228 ~~~~~~v~~l~~lG~~~~~~~f~~a~~~~~~~s~~~~~~kv~~l~~~G~s~~~v~~~ 284 (389)
....++|+.+.+|||+++. -+..|.+.+|+.+.....
T Consensus 161 ~~~eekV~~l~~MGf~~~~--------------------a~~AL~~~~wd~~~A~e~ 197 (201)
T 3k9o_A 161 PEYTKKIENLCAMGFDRNA--------------------VIVALSSKSWDVETATEL 197 (201)
T ss_dssp HHHHHHHHHHHTTTCCHHH--------------------HHHHHHHTTTCHHHHHHH
T ss_pred chhHHHHHHHHHcCCCHHH--------------------HHHHHHHcCCCHHHHHHH
Confidence 3568899999999999742 234566677777665443
No 98
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=22.32 E-value=1.7e+02 Score=22.78 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=8.3
Q ss_pred HcCCChhhhhhHhhcCc
Q 048516 132 EFGFSSSDIVDIISSDP 148 (389)
Q Consensus 132 slG~s~~~i~~iv~~~P 148 (389)
.+|++..+|..|-..+|
T Consensus 44 ~LGlse~dId~I~~~~p 60 (114)
T 2of5_A 44 SLGLSQTDIYRCKANHP 60 (114)
T ss_dssp TTTCCHHHHHHHHHHCS
T ss_pred HcCCCHHHHHHHHHHCC
Confidence 34455555555444444
No 99
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=22.03 E-value=1.1e+02 Score=26.62 Aligned_cols=24 Identities=13% Similarity=-0.265 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhhCChhHHHHHHHh
Q 048516 159 FQRSFLVLNSVLGSNAGVCKAIKA 182 (389)
Q Consensus 159 L~p~~~fL~~~g~s~~~v~~~l~~ 182 (389)
-.-.+.||..-|.+.+.+..++..
T Consensus 182 k~K~~~~L~rrGFs~~~I~~vl~~ 205 (221)
T 3d5l_A 182 EQKVQQGLTTKGFSSSVYEMIKDE 205 (221)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHh
Confidence 445667777777777777666644
No 100
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=21.63 E-value=1.1e+02 Score=21.67 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=16.2
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHhcCCc
Q 048516 87 SDSVLSFLRESGFSSTHIEKMVAKKPN 113 (389)
Q Consensus 87 ~~~vl~~L~~lGls~~~i~~iv~~~P~ 113 (389)
++.+.+.++..|+|.+++++.+.-.+.
T Consensus 11 ~~ri~~~l~~~glT~~~LA~~~Gvs~s 37 (74)
T 1neq_A 11 RADVIAGLKKRKLSLSALSRQFGYAPT 37 (74)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHH
Confidence 455666666667777666655544443
No 101
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=20.79 E-value=58 Score=25.80 Aligned_cols=75 Identities=7% Similarity=0.061 Sum_probs=44.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhhccCCChhhHhhCCceee-cCCC----C--------cc
Q 048516 266 LKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRDVDISSIVNNASLFL-CSIE----S--------NL 332 (389)
Q Consensus 266 ~kv~~l~~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~mg~~~~~i~~~P~lL~-~Sle----~--------ri 332 (389)
..+.-|.+|||+.+.+..+++.+.+ ..+...++||..++.-+ ++ ..|..+. |+-. . .+
T Consensus 5 ~~l~~L~~MGF~~~~a~~AL~~t~n------~~~e~A~~wL~~~~~d~--di-~epl~~~~~~s~~~~~~~~l~~~~~~~ 75 (126)
T 2lbc_A 5 SSVMQLAEMGFPLEACRKAVYFTGN------MGAEVAFNWIIVHMEEP--DF-AEPLTMPGYGGAASAGASVFGASGLDN 75 (126)
T ss_dssp HHHHHHHTTSSCCHHHHHHHHHHTS------CCHHHHHHHHHHGGGCS--SS-SCTTCCSSCCSSSSSCCCCSTTSSCCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC------CCHHHHHHHHHHhcccc--cc-cccccccccccccccchhhhccccccc
Confidence 3456777888888888888876533 24778888998865422 11 1121111 1100 0 23
Q ss_pred chHHHHHHHHHHcCccc
Q 048516 333 KPRMRVYDMLKSKNLLR 349 (389)
Q Consensus 333 ~PR~~vl~~L~~kGl~~ 349 (389)
.+.-..++-|.+.|..+
T Consensus 76 ~~~e~~v~~L~~MGF~~ 92 (126)
T 2lbc_A 76 QPPEEIVAIITSMGFQR 92 (126)
T ss_dssp CCCHHHHHHHHHHTSCH
T ss_pred CcCHHHHHHHHHcCCCH
Confidence 35566778888999853
No 102
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=20.23 E-value=71 Score=27.04 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=11.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHH
Q 048516 266 LKLKLFRSLGFSEDNILSMFR 286 (389)
Q Consensus 266 ~kv~~l~~~G~s~~~v~~~~~ 286 (389)
++|+-|+.+||+++.+..++.
T Consensus 132 eaI~rL~~mGF~r~~viqA~~ 152 (171)
T 2qsf_X 132 QAISRLCELGFERDLVIQVYF 152 (171)
T ss_dssp HHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 445555555666555555444
Done!