Query 048518
Match_columns 259
No_of_seqs 126 out of 1419
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 10:13:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048518.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048518hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.6 3.4E-14 7.3E-19 138.6 12.5 44 201-246 866-909 (1153)
2 PLN03210 Resistant to P. syrin 99.5 1.3E-13 2.8E-18 134.6 11.3 200 23-246 611-841 (1153)
3 PLN00113 leucine-rich repeat r 99.2 6E-11 1.3E-15 114.8 10.8 125 8-148 71-203 (968)
4 PLN00113 leucine-rich repeat r 99.2 1.1E-10 2.4E-15 112.9 10.0 38 202-241 330-367 (968)
5 KOG4341 F-box protein containi 98.9 1.4E-11 3E-16 103.6 -7.2 70 21-94 162-231 (483)
6 KOG4341 F-box protein containi 98.9 1.4E-11 3.1E-16 103.6 -8.1 216 22-245 137-387 (483)
7 KOG4194 Membrane glycoprotein 98.5 2.9E-08 6.4E-13 87.4 0.4 65 175-242 364-428 (873)
8 KOG0444 Cytoskeletal regulator 98.4 1.6E-08 3.4E-13 89.8 -2.6 115 9-142 129-254 (1255)
9 KOG3207 Beta-tubulin folding c 98.4 8.1E-08 1.8E-12 81.8 1.0 204 22-236 120-332 (505)
10 KOG2120 SCF ubiquitin ligase, 98.4 2.7E-08 5.8E-13 81.0 -2.6 169 22-219 209-378 (419)
11 KOG4194 Membrane glycoprotein 98.3 2.9E-07 6.3E-12 81.3 3.1 126 105-239 195-350 (873)
12 KOG0444 Cytoskeletal regulator 98.3 2.4E-08 5.2E-13 88.7 -4.2 130 77-239 171-300 (1255)
13 PRK15387 E3 ubiquitin-protein 98.3 5.7E-06 1.2E-10 77.3 10.1 36 204-242 422-457 (788)
14 cd00116 LRR_RI Leucine-rich re 98.3 9.9E-08 2.1E-12 80.7 -1.5 66 174-241 219-289 (319)
15 KOG1947 Leucine rich repeat pr 98.2 6.9E-08 1.5E-12 86.2 -2.9 121 22-146 187-308 (482)
16 PRK15387 E3 ubiquitin-protein 98.2 9.8E-06 2.1E-10 75.8 10.4 193 9-241 204-413 (788)
17 cd00116 LRR_RI Leucine-rich re 98.2 2.5E-07 5.4E-12 78.2 -0.2 67 174-242 191-262 (319)
18 PRK15370 E3 ubiquitin-protein 98.2 1.8E-06 4E-11 80.7 5.1 32 23-60 199-230 (754)
19 PRK15370 E3 ubiquitin-protein 98.2 7.4E-06 1.6E-10 76.7 8.5 53 176-240 346-398 (754)
20 KOG4658 Apoptotic ATPase [Sign 98.1 1E-06 2.2E-11 83.7 1.7 80 166-249 707-789 (889)
21 PRK15386 type III secretion pr 98.1 2.3E-05 5E-10 67.7 8.7 58 176-244 156-214 (426)
22 KOG2120 SCF ubiquitin ligase, 98.0 4.7E-07 1E-11 73.8 -2.4 139 23-186 234-373 (419)
23 KOG3207 Beta-tubulin folding c 98.0 9.9E-07 2.1E-11 75.3 -1.1 182 18-213 141-335 (505)
24 PF13855 LRR_8: Leucine rich r 97.8 3.8E-05 8.1E-10 48.3 4.4 60 176-241 1-60 (61)
25 PRK15386 type III secretion pr 97.8 7.9E-05 1.7E-09 64.5 7.6 137 48-240 50-187 (426)
26 PF14580 LRR_9: Leucine-rich r 97.8 1.8E-05 3.9E-10 60.8 3.4 80 49-142 18-97 (175)
27 KOG0618 Serine/threonine phosp 97.8 6.6E-06 1.4E-10 76.3 0.3 126 103-237 379-507 (1081)
28 PF13855 LRR_8: Leucine rich r 97.7 8.5E-05 1.8E-09 46.7 5.2 34 107-142 1-34 (61)
29 KOG1947 Leucine rich repeat pr 97.5 2.2E-05 4.9E-10 70.0 0.4 64 175-240 268-331 (482)
30 KOG0472 Leucine-rich repeat pr 97.5 1.7E-05 3.7E-10 67.4 -0.6 41 200-243 501-541 (565)
31 KOG4237 Extracellular matrix p 97.5 2.7E-06 5.9E-11 71.9 -5.5 63 172-240 270-332 (498)
32 KOG0472 Leucine-rich repeat pr 97.5 1.7E-06 3.7E-11 73.3 -6.9 73 162-243 236-310 (565)
33 KOG0617 Ras suppressor protein 97.4 4.4E-06 9.4E-11 63.1 -4.9 45 171-221 145-189 (264)
34 KOG3665 ZYG-1-like serine/thre 97.4 8.2E-05 1.8E-09 69.2 2.1 15 172-186 216-230 (699)
35 KOG3665 ZYG-1-like serine/thre 97.3 7.9E-05 1.7E-09 69.3 1.4 135 79-240 122-260 (699)
36 PF14580 LRR_9: Leucine-rich r 97.3 0.00016 3.5E-09 55.6 2.6 128 78-240 18-150 (175)
37 KOG0617 Ras suppressor protein 97.1 1.6E-05 3.4E-10 60.2 -4.3 152 48-240 31-183 (264)
38 KOG0618 Serine/threonine phosp 96.9 0.00016 3.4E-09 67.5 -1.1 53 49-115 218-272 (1081)
39 KOG4658 Apoptotic ATPase [Sign 96.6 0.0039 8.5E-08 59.8 6.1 131 74-221 712-846 (889)
40 KOG3864 Uncharacterized conser 96.4 0.00044 9.6E-09 53.7 -1.7 37 78-117 150-186 (221)
41 KOG3864 Uncharacterized conser 96.2 0.00084 1.8E-08 52.1 -0.7 71 74-147 120-190 (221)
42 PLN03150 hypothetical protein; 96.2 0.012 2.7E-07 54.6 6.7 110 109-244 420-529 (623)
43 PLN03150 hypothetical protein; 96.2 0.01 2.2E-07 55.2 6.0 62 77-145 440-502 (623)
44 KOG1909 Ran GTPase-activating 96.0 0.0031 6.8E-08 52.9 1.3 68 174-242 239-310 (382)
45 KOG1259 Nischarin, modulator o 95.9 0.0016 3.5E-08 53.8 -0.8 16 171-186 394-409 (490)
46 PF12799 LRR_4: Leucine Rich r 95.8 0.013 2.8E-07 34.0 3.1 39 176-220 1-39 (44)
47 PF12799 LRR_4: Leucine Rich r 95.6 0.015 3.3E-07 33.7 2.8 39 204-246 1-39 (44)
48 KOG4237 Extracellular matrix p 95.3 0.00089 1.9E-08 57.1 -4.2 86 124-216 265-358 (498)
49 KOG1259 Nischarin, modulator o 94.5 0.0059 1.3E-07 50.6 -1.3 34 22-60 306-339 (490)
50 KOG1909 Ran GTPase-activating 94.4 0.0045 9.8E-08 52.0 -2.4 176 47-241 89-281 (382)
51 KOG2982 Uncharacterized conser 93.9 0.053 1.1E-06 45.1 2.9 42 19-61 67-108 (418)
52 KOG2123 Uncharacterized conser 93.5 0.0045 9.7E-08 50.7 -3.8 31 107-141 19-49 (388)
53 KOG1644 U2-associated snRNP A' 93.2 0.26 5.7E-06 38.7 5.5 91 103-214 60-150 (233)
54 KOG2739 Leucine-rich acidic nu 93.1 0.037 8.1E-07 44.8 0.8 14 104-117 62-75 (260)
55 KOG1644 U2-associated snRNP A' 93.1 0.13 2.9E-06 40.3 3.8 87 47-143 61-150 (233)
56 PF13504 LRR_7: Leucine rich r 92.9 0.074 1.6E-06 24.0 1.3 10 206-215 3-12 (17)
57 KOG1859 Leucine-rich repeat pr 92.8 0.0087 1.9E-07 55.2 -3.4 39 22-62 83-121 (1096)
58 PF13306 LRR_5: Leucine rich r 91.6 1.1 2.3E-05 32.1 7.0 9 175-183 80-88 (129)
59 COG4886 Leucine-rich repeat (L 91.2 0.28 6E-06 42.8 4.1 33 203-239 254-286 (394)
60 PF13306 LRR_5: Leucine rich r 90.7 1.3 2.8E-05 31.6 6.7 34 104-140 55-88 (129)
61 KOG0532 Leucine-rich repeat (L 90.6 0.014 3E-07 52.4 -4.5 173 22-240 97-270 (722)
62 smart00367 LRR_CC Leucine-rich 90.3 0.15 3.2E-06 25.7 0.9 18 203-220 1-18 (26)
63 COG4886 Leucine-rich repeat (L 89.9 0.27 5.8E-06 42.9 2.9 171 23-217 116-290 (394)
64 KOG0532 Leucine-rich repeat (L 88.1 0.13 2.8E-06 46.5 -0.4 127 103-243 117-247 (722)
65 KOG2123 Uncharacterized conser 87.7 0.037 8E-07 45.5 -3.6 13 46-58 59-71 (388)
66 KOG2982 Uncharacterized conser 86.3 0.27 5.8E-06 41.0 0.5 42 203-245 223-264 (418)
67 KOG2739 Leucine-rich acidic nu 85.7 0.51 1.1E-05 38.4 1.8 87 48-143 63-153 (260)
68 KOG1859 Leucine-rich repeat pr 82.5 0.083 1.8E-06 49.1 -4.3 105 22-144 186-290 (1096)
69 PF00560 LRR_1: Leucine Rich R 81.6 0.61 1.3E-05 22.4 0.5 16 206-222 2-17 (22)
70 KOG0531 Protein phosphatase 1, 71.2 1.3 2.7E-05 39.2 -0.1 36 105-142 160-195 (414)
71 KOG0531 Protein phosphatase 1, 70.2 2 4.4E-05 37.9 1.0 36 175-214 161-196 (414)
72 KOG4579 Leucine-rich repeat (L 64.3 1.4 3E-05 32.7 -1.0 54 28-90 58-111 (177)
73 KOG3763 mRNA export factor TAP 56.1 5 0.00011 36.4 0.8 80 6-86 218-308 (585)
74 smart00370 LRR Leucine-rich re 55.3 8.7 0.00019 18.8 1.3 17 176-193 2-18 (26)
75 smart00369 LRR_TYP Leucine-ric 55.3 8.7 0.00019 18.8 1.3 17 176-193 2-18 (26)
76 PF13516 LRR_6: Leucine Rich r 54.6 8.1 0.00017 18.6 1.1 12 230-241 2-13 (24)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.55 E-value=3.4e-14 Score=138.64 Aligned_cols=44 Identities=16% Similarity=0.258 Sum_probs=33.3
Q ss_pred ccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEecccccccc
Q 048518 201 YCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWSMEGI 246 (259)
Q Consensus 201 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 246 (259)
..+++|+.|++.+|++++.++. ....++.|+.+++++|+.+.++
T Consensus 866 ~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 866 EKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred hcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCcccccc
Confidence 4567888888888888888766 3456778888888888877654
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.49 E-value=1.3e-13 Score=134.58 Aligned_cols=200 Identities=17% Similarity=0.254 Sum_probs=121.8
Q ss_pred hccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeeccccccccccccccccC
Q 048518 23 KRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLRE 102 (259)
Q Consensus 23 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 102 (259)
.+|+.|++.++ .++.++.. +..+++|+.|+++++..+..+ + ....+++|+.|++.+|..+..+.. .
T Consensus 611 ~~L~~L~L~~s-~l~~L~~~---~~~l~~Lk~L~Ls~~~~l~~i-p-----~ls~l~~Le~L~L~~c~~L~~lp~----s 676 (1153)
T PLN03210 611 ENLVKLQMQGS-KLEKLWDG---VHSLTGLRNIDLRGSKNLKEI-P-----DLSMATNLETLKLSDCSSLVELPS----S 676 (1153)
T ss_pred cCCcEEECcCc-cccccccc---cccCCCCCEEECCCCCCcCcC-C-----ccccCCcccEEEecCCCCccccch----h
Confidence 34445554443 23333322 346777777777777665554 2 123467888888888877765521 2
Q ss_pred cccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCcc---------
Q 048518 103 DQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQV--------- 173 (259)
Q Consensus 103 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~--------- 173 (259)
+..+++|+.|++.+|..++.+ |... ++++|+.|++.+|..+..++.....+..+.-..+.++.++...
T Consensus 677 i~~L~~L~~L~L~~c~~L~~L-p~~i--~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~ 753 (1153)
T PLN03210 677 IQYLNKLEDLDMSRCENLEIL-PTGI--NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELI 753 (1153)
T ss_pred hhccCCCCEEeCCCCCCcCcc-CCcC--CCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccccccccccccccccc
Confidence 567788888888888777766 4332 5778888888888776665433333322221111111111111
Q ss_pred ----------------------ccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCC
Q 048518 174 ----------------------TFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQ 231 (259)
Q Consensus 174 ----------------------~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 231 (259)
..++|+.|++++|+.+..++.. +.++++|+.|++++|..++.+|... ++++
T Consensus 754 l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s----i~~L~~L~~L~Ls~C~~L~~LP~~~---~L~s 826 (1153)
T PLN03210 754 LCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS----IQNLHKLEHLEIENCINLETLPTGI---NLES 826 (1153)
T ss_pred ccccchhhccccccccchhhhhccccchheeCCCCCCccccChh----hhCCCCCCEEECCCCCCcCeeCCCC---Cccc
Confidence 1246666777766665555432 4467888999998888888887632 6788
Q ss_pred ccEEEEecccccccc
Q 048518 232 LRHLEIINCWSMEGI 246 (259)
Q Consensus 232 L~~L~l~~c~~l~~~ 246 (259)
|++|++++|..++.+
T Consensus 827 L~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 827 LESLDLSGCSRLRTF 841 (1153)
T ss_pred cCEEECCCCCccccc
Confidence 888888888777654
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.22 E-value=6e-11 Score=114.83 Aligned_cols=125 Identities=20% Similarity=0.111 Sum_probs=67.9
Q ss_pred eEeeeeccchHHH-------HHhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCc
Q 048518 8 KVSLLLGNDGTKM-------LLKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPL 80 (259)
Q Consensus 8 ~~~l~ls~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 80 (259)
...++++.+.+.. .+++|+.|++.++.-...++.. . ...+++|+.|+++++.....+ +...+++
T Consensus 71 v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~-~-~~~l~~L~~L~Ls~n~l~~~~-------p~~~l~~ 141 (968)
T PLN00113 71 VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDD-I-FTTSSSLRYLNLSNNNFTGSI-------PRGSIPN 141 (968)
T ss_pred EEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChH-H-hccCCCCCEEECcCCcccccc-------CccccCC
Confidence 3456666554321 2678888888776432233322 1 236778888888877543322 2234677
Q ss_pred ccEeecccccccccccccccc-CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcce
Q 048518 81 LESLDLINLTNLETICYSQLR-EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKM 148 (259)
Q Consensus 81 L~~L~l~~~~~l~~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 148 (259)
|++|+++++.-...+ | .+..+++|+.|+++++. +....|..+ .++++|+.|++.+|.....
T Consensus 142 L~~L~Ls~n~~~~~~-----p~~~~~l~~L~~L~L~~n~-l~~~~p~~~-~~l~~L~~L~L~~n~l~~~ 203 (968)
T PLN00113 142 LETLDLSNNMLSGEI-----PNDIGSFSSLKVLDLGGNV-LVGKIPNSL-TNLTSLEFLTLASNQLVGQ 203 (968)
T ss_pred CCEEECcCCcccccC-----ChHHhcCCCCCEEECccCc-ccccCChhh-hhCcCCCeeeccCCCCcCc
Confidence 777777665321111 1 24556677777776653 322224333 4566666666666554333
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.17 E-value=1.1e-10 Score=112.92 Aligned_cols=38 Identities=8% Similarity=-0.117 Sum_probs=20.3
Q ss_pred cCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccc
Q 048518 202 CCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCW 241 (259)
Q Consensus 202 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 241 (259)
.+++|+.|++++|.....+|. ....+++|+.|++++|.
T Consensus 330 ~l~~L~~L~L~~n~l~~~~p~--~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 330 SLPRLQVLQLWSNKFSGEIPK--NLGKHNNLTVLDLSTNN 367 (968)
T ss_pred cCCCCCEEECcCCCCcCcCCh--HHhCCCCCcEEECCCCe
Confidence 455566666655554333333 34455666666666553
No 5
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.90 E-value=1.4e-11 Score=103.63 Aligned_cols=70 Identities=20% Similarity=0.208 Sum_probs=35.0
Q ss_pred HHhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeeccccccccc
Q 048518 21 LLKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLET 94 (259)
Q Consensus 21 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 94 (259)
.++++++|.+.+|..+++...... ...++.|+.|.+..|+.++.. ........+++|++|.++.|+.+..
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sl-a~~C~~l~~l~L~~c~~iT~~---~Lk~la~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSL-ARYCRKLRHLNLHSCSSITDV---SLKYLAEGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHH-HHhcchhhhhhhcccchhHHH---HHHHHHHhhhhHHHhhhccCchhhc
Confidence 366666666666665554432211 234556666666666555432 1111223356666666665555444
No 6
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.88 E-value=1.4e-11 Score=103.58 Aligned_cols=216 Identities=16% Similarity=0.200 Sum_probs=126.5
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
=..|+.|.+.+|....+-+.... ...+|+++.|.+.+|.+++.. ........+++|+.|.+..|.++.+.....+
T Consensus 137 gg~lk~LSlrG~r~v~~sslrt~-~~~CpnIehL~l~gc~~iTd~---s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l- 211 (483)
T KOG4341|consen 137 GGFLKELSLRGCRAVGDSSLRTF-ASNCPNIEHLALYGCKKITDS---SLLSLARYCRKLRHLNLHSCSSITDVSLKYL- 211 (483)
T ss_pred ccccccccccccccCCcchhhHH-hhhCCchhhhhhhcceeccHH---HHHHHHHhcchhhhhhhcccchhHHHHHHHH-
Confidence 36788888988887766544433 467889999999999876632 2222344578889999988888777643322
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcce--ecccCCCCCcccC------------------
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKM--MIGPDMEKPTTTQ------------------ 161 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~--~~~~~~~~~~l~~------------------ 161 (259)
...+++|++|++++|+.+++-.......++..++.+..++|..++. +....++...+..
T Consensus 212 -a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~ 290 (483)
T KOG4341|consen 212 -AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA 290 (483)
T ss_pred -HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHh
Confidence 3578899999999998877643444456677777777777765432 1112222111100
Q ss_pred ------------Cccccc---cCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHH
Q 048518 162 ------------GFTEIN---AEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMA 226 (259)
Q Consensus 162 ------------~~~~~~---~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 226 (259)
++.++. ...-..+.++|+.+.+..|..+++...... ..+++.|+.+++.+|.....-.-.+..
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l--~rn~~~Le~l~~e~~~~~~d~tL~sls 368 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML--GRNCPHLERLDLEECGLITDGTLASLS 368 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh--hcCChhhhhhcccccceehhhhHhhhc
Confidence 111111 000122346666666666655544433222 345666666666666654443222244
Q ss_pred hhcCCccEEEEeccccccc
Q 048518 227 NSLGQLRHLEIINCWSMEG 245 (259)
Q Consensus 227 ~~l~~L~~L~l~~c~~l~~ 245 (259)
.+|+.|+.+.++.|..+.+
T Consensus 369 ~~C~~lr~lslshce~itD 387 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITD 387 (483)
T ss_pred cCCchhccCChhhhhhhhh
Confidence 5667777777777765554
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.48 E-value=2.9e-08 Score=87.37 Aligned_cols=65 Identities=22% Similarity=0.209 Sum_probs=34.5
Q ss_pred cCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEecccc
Q 048518 175 FPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWS 242 (259)
Q Consensus 175 l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 242 (259)
+.+|+.|++... .+...-.++.....++++|++|++.+ .+++.++...+ ..+++|++|++.+.+.
T Consensus 364 lssL~~LdLr~N-~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAf-sgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 364 LSSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAF-SGLEALEHLDLGDNAI 428 (873)
T ss_pred hhhhhhhcCcCC-eEEEEEecchhhhccchhhhheeecC-ceeeecchhhh-ccCcccceecCCCCcc
Confidence 456666666655 23222122211233467777777766 34666665443 3456777777766543
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.43 E-value=1.6e-08 Score=89.84 Aligned_cols=115 Identities=15% Similarity=0.152 Sum_probs=54.5
Q ss_pred EeeeeccchHHHH----Hh---ccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCC--
Q 048518 9 VSLLLGNDGTKML----LK---RTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFP-- 79 (259)
Q Consensus 9 ~~l~ls~~~~~~~----~~---~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~-- 79 (259)
+.|.+|+|.|... |- .|-.|+++++ .++..+.+ +..+.+|+.|.+++.|.... ....+|
T Consensus 129 iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ---~RRL~~LqtL~Ls~NPL~hf--------QLrQLPsm 196 (1255)
T KOG0444|consen 129 IVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ---IRRLSMLQTLKLSNNPLNHF--------QLRQLPSM 196 (1255)
T ss_pred EEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH---HHHHhhhhhhhcCCChhhHH--------HHhcCccc
Confidence 4456666665432 33 3333344333 34455444 44666777777777764332 222334
Q ss_pred -cccEeecccccccccccccccc-CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEe
Q 048518 80 -LLESLDLINLTNLETICYSQLR-EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVN 142 (259)
Q Consensus 80 -~L~~L~l~~~~~l~~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 142 (259)
+|+.|++++-.+ .. ..+| .+-.+.||..++++.. +++.+ |... .++++|+.|++++
T Consensus 197 tsL~vLhms~TqR---Tl-~N~Ptsld~l~NL~dvDlS~N-~Lp~v-Pecl-y~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 197 TSLSVLHMSNTQR---TL-DNIPTSLDDLHNLRDVDLSEN-NLPIV-PECL-YKLRNLRRLNLSG 254 (1255)
T ss_pred hhhhhhhcccccc---hh-hcCCCchhhhhhhhhcccccc-CCCcc-hHHH-hhhhhhheeccCc
Confidence 444444443221 10 1112 2445556666666543 45544 3333 3456666666655
No 9
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=8.1e-08 Score=81.76 Aligned_cols=204 Identities=18% Similarity=0.184 Sum_probs=91.3
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
+++|+++.+.++ .+...... .....|++++.|++++. .+..+ ... .....++|+|+.|.++.- .+...+....
T Consensus 120 ~kkL~~IsLdn~-~V~~~~~~-~~~k~~~~v~~LdLS~N-L~~nw-~~v-~~i~eqLp~Le~LNls~N-rl~~~~~s~~- 192 (505)
T KOG3207|consen 120 LKKLREISLDNY-RVEDAGIE-EYSKILPNVRDLDLSRN-LFHNW-FPV-LKIAEQLPSLENLNLSSN-RLSNFISSNT- 192 (505)
T ss_pred HHhhhheeecCc-cccccchh-hhhhhCCcceeecchhh-hHHhH-HHH-HHHHHhcccchhcccccc-cccCCccccc-
Confidence 566666666554 23333221 11456667777766653 12211 100 002345666666666543 2222222221
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCC---Cccc-CCccccccC--CCcccc
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEK---PTTT-QGFTEINAE--DDQVTF 175 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~---~~l~-~~~~~~~~~--~~~~~l 175 (259)
...++.|+.|.+.+| .++.--.......+|+|+.|.+.....+..-....... ..+. ++++.++.. +....|
T Consensus 193 -~~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 193 -TLLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred -hhhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccc
Confidence 235566666666666 33321122334456666666666553211000000000 0111 022222221 345567
Q ss_pred CCcCEEeeCCCccccccCcCC---CcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEE
Q 048518 176 PRLEELELVSLTNIKKLWPDQ---FQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLE 236 (259)
Q Consensus 176 ~~L~~L~l~~c~~l~~l~~~~---~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 236 (259)
|.|+.|+++.+ .+.++-.-. ......+++|+.|++...+ ++.++...-++.+++|+.+.
T Consensus 271 ~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 271 PGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLR 332 (505)
T ss_pred cchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCc-cccccccchhhccchhhhhh
Confidence 77777777776 555442211 1113457778888776644 33343333344445555544
No 10
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.7e-08 Score=80.97 Aligned_cols=169 Identities=15% Similarity=0.130 Sum_probs=100.3
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
|.+|+.|.+.+...-..+... +..-.+|+.|+++.|..+... ........+..|..|+|+.|.-....-...+
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~---iAkN~~L~~lnlsm~sG~t~n---~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V- 281 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNT---IAKNSNLVRLNLSMCSGFTEN---ALQLLLSSCSRLDELNLSWCFLFTEKVTVAV- 281 (419)
T ss_pred HHhhhhccccccccCcHHHHH---Hhccccceeeccccccccchh---HHHHHHHhhhhHhhcCchHhhccchhhhHHH-
Confidence 677777777776443333333 335678888888888776642 1111344567788888877754433210000
Q ss_pred CcccCCCccEEEEecCCC-ceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCE
Q 048518 102 EDQSFSNLRIIYVYSCPK-LKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEE 180 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~-l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~ 180 (259)
..--++|+.|++++|.+ +..-........+|+|..|++++|..+..-.. ..+..|+.|++
T Consensus 282 -~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~------------------~~~~kf~~L~~ 342 (419)
T KOG2120|consen 282 -AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF------------------QEFFKFNYLQH 342 (419)
T ss_pred -hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH------------------HHHHhcchhee
Confidence 12236788888888843 33222334456788888888888877744111 12445788888
Q ss_pred EeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCc
Q 048518 181 LELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKY 219 (259)
Q Consensus 181 L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~ 219 (259)
|.++.|-.+ .+.......+.|+|.+|++-+|-.=+.
T Consensus 343 lSlsRCY~i---~p~~~~~l~s~psl~yLdv~g~vsdt~ 378 (419)
T KOG2120|consen 343 LSLSRCYDI---IPETLLELNSKPSLVYLDVFGCVSDTT 378 (419)
T ss_pred eehhhhcCC---ChHHeeeeccCcceEEEEeccccCchH
Confidence 888888222 121111244568888888887765433
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.34 E-value=2.9e-07 Score=81.25 Aligned_cols=126 Identities=17% Similarity=0.206 Sum_probs=66.3
Q ss_pred cCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCccee-cccCCCCCcccC-----------------Ccccc
Q 048518 105 SFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMM-IGPDMEKPTTTQ-----------------GFTEI 166 (259)
Q Consensus 105 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~l~~-----------------~~~~~ 166 (259)
.+.+|..|.++.. .++.+ |...++++++|+.|++.... ++.+ .-.-.+++++.+ ++..+
T Consensus 195 ~lnsL~tlkLsrN-rittL-p~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~km 271 (873)
T KOG4194|consen 195 SLNSLLTLKLSRN-RITTL-PQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKM 271 (873)
T ss_pred ccchheeeecccC-ccccc-CHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeeccc
Confidence 4456666666664 45555 55666788888888776532 2211 011122222211 11111
Q ss_pred ----------c--cCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccE
Q 048518 167 ----------N--AEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRH 234 (259)
Q Consensus 167 ----------~--~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~ 234 (259)
. .-+....+++|+.|++++. .++++-.+. ...+++|+.|++++.. ++.+++.+ ..-+..|++
T Consensus 272 e~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~---WsftqkL~~LdLs~N~-i~~l~~~s-f~~L~~Le~ 345 (873)
T KOG4194|consen 272 EHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDS---WSFTQKLKELDLSSNR-ITRLDEGS-FRVLSQLEE 345 (873)
T ss_pred ceeecccchhhhhhcccccccchhhhhccchh-hhheeecch---hhhcccceeEeccccc-cccCChhH-HHHHHHhhh
Confidence 1 1123455677777777765 556554443 4456788888887644 56665533 223445555
Q ss_pred EEEec
Q 048518 235 LEIIN 239 (259)
Q Consensus 235 L~l~~ 239 (259)
|.++.
T Consensus 346 LnLs~ 350 (873)
T KOG4194|consen 346 LNLSH 350 (873)
T ss_pred hcccc
Confidence 55544
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.31 E-value=2.4e-08 Score=88.74 Aligned_cols=130 Identities=22% Similarity=0.244 Sum_probs=59.2
Q ss_pred CCCcccEeeccccccccccccccccCcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCC
Q 048518 77 VFPLLESLDLINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEK 156 (259)
Q Consensus 77 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 156 (259)
.+.+|++|.+++-| |.++...++ .++.+|..|++++-...-.-+|.++ ..+.||..++++. +++..+|.
T Consensus 171 RL~~LqtL~Ls~NP-L~hfQLrQL---PsmtsL~vLhms~TqRTl~N~Ptsl-d~l~NL~dvDlS~-N~Lp~vPe----- 239 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNP-LNHFQLRQL---PSMTSLSVLHMSNTQRTLDNIPTSL-DDLHNLRDVDLSE-NNLPIVPE----- 239 (1255)
T ss_pred HHhhhhhhhcCCCh-hhHHHHhcC---ccchhhhhhhcccccchhhcCCCch-hhhhhhhhccccc-cCCCcchH-----
Confidence 34556666665543 122222222 2455555556555433322223332 3455666655543 23322221
Q ss_pred CcccCCccccccCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEE
Q 048518 157 PTTTQGFTEINAEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLE 236 (259)
Q Consensus 157 ~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 236 (259)
.+..+++|++|++++. +++.+... ...+.+|++|++++. .++.+|. .+..++.|+.|+
T Consensus 240 --------------cly~l~~LrrLNLS~N-~iteL~~~----~~~W~~lEtLNlSrN-QLt~LP~--avcKL~kL~kLy 297 (1255)
T KOG0444|consen 240 --------------CLYKLRNLRRLNLSGN-KITELNMT----EGEWENLETLNLSRN-QLTVLPD--AVCKLTKLTKLY 297 (1255)
T ss_pred --------------HHhhhhhhheeccCcC-ceeeeecc----HHHHhhhhhhccccc-hhccchH--HHhhhHHHHHHH
Confidence 3445667777777765 45544221 123455555555542 2444443 333444444444
Q ss_pred Eec
Q 048518 237 IIN 239 (259)
Q Consensus 237 l~~ 239 (259)
+.+
T Consensus 298 ~n~ 300 (1255)
T KOG0444|consen 298 ANN 300 (1255)
T ss_pred hcc
Confidence 433
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.27 E-value=5.7e-06 Score=77.34 Aligned_cols=36 Identities=14% Similarity=0.004 Sum_probs=24.3
Q ss_pred CCccEEEEecCCCCCccCChhHHhhcCCccEEEEecccc
Q 048518 204 QNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWS 242 (259)
Q Consensus 204 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 242 (259)
.+|+.|+++++. ++.+|. .+.++++|+.+++++++-
T Consensus 422 ~~L~~L~Ls~Nq-Lt~LP~--sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 422 SGLLSLSVYRNQ-LTRLPE--SLIHLSSETTVNLEGNPL 457 (788)
T ss_pred hhhhhhhhccCc-ccccCh--HHhhccCCCeEECCCCCC
Confidence 356666666533 566654 356788899999988764
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.26 E-value=9.9e-08 Score=80.70 Aligned_cols=66 Identities=12% Similarity=0.008 Sum_probs=30.3
Q ss_pred ccCCcCEEeeCCCccccccCcCCCc--ccccCCCccEEEEecCCCCCccCCh---hHHhhcCCccEEEEeccc
Q 048518 174 TFPRLEELELVSLTNIKKLWPDQFQ--GMYCCQNLTKVTVTRCCPLKYMFSY---SMANSLGQLRHLEIINCW 241 (259)
Q Consensus 174 ~l~~L~~L~l~~c~~l~~l~~~~~~--~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~l~~L~~L~l~~c~ 241 (259)
.+++|+.|++++| .++........ .....+.|++|++.+|. +++.... .....+++|++++++++.
T Consensus 219 ~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 219 SLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred ccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 4566777777766 33321110000 00013567777777664 3211111 123334566777776653
No 15
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.25 E-value=6.9e-08 Score=86.16 Aligned_cols=121 Identities=21% Similarity=0.241 Sum_probs=84.8
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecC-cCcceecccccccccCCCCcccEeeccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGC-SEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQL 100 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c-~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 100 (259)
++.++.|.+.+|..+.+...... ...+++|++|++.+| ...... +.........+++|+.|+++.+..+.+.....+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDAL-ALKCPNLEELDLSGCCLLITLS-PLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred CchhhHhhhcccccCChhhHHHH-HhhCchhheecccCcccccccc-hhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 68899999999888776432111 457889999999884 222221 111111344568999999999887766644333
Q ss_pred cCcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCc
Q 048518 101 REDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKL 146 (259)
Q Consensus 101 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 146 (259)
. ..+++|+.|.+.+|..+++.....++..+++|++|++.+|..+
T Consensus 265 ~--~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 265 A--SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred H--hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 2 3488999999888987776666667788999999999999886
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.22 E-value=9.8e-06 Score=75.81 Aligned_cols=193 Identities=17% Similarity=0.147 Sum_probs=97.8
Q ss_pred EeeeeccchHHHH----HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEe
Q 048518 9 VSLLLGNDGTKML----LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESL 84 (259)
Q Consensus 9 ~~l~ls~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L 84 (259)
-+|+++++++..+ .++|+.|.+.++ .++.++ ...++|+.|+++++ .+..+ +. ..++|+.|
T Consensus 204 ~~LdLs~~~LtsLP~~l~~~L~~L~L~~N-~Lt~LP------~lp~~Lk~LdLs~N-~LtsL-P~-------lp~sL~~L 267 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLPAHITTLVIPDN-NLTSLP------ALPPELRTLEVSGN-QLTSL-PV-------LPPGLLEL 267 (788)
T ss_pred cEEEcCCCCCCcCCcchhcCCCEEEccCC-cCCCCC------CCCCCCcEEEecCC-ccCcc-cC-------ccccccee
Confidence 3567776665542 356788887765 455442 13578899999876 55544 21 24677777
Q ss_pred eccccccccccccccccCcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCcc
Q 048518 85 DLINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFT 164 (259)
Q Consensus 85 ~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~ 164 (259)
++.++. +..+ | ..+.+|+.|+++++ .++.+ |. .+++|+.|+++++ .+..++.....+..+....+
T Consensus 268 ~Ls~N~-L~~L-----p--~lp~~L~~L~Ls~N-~Lt~L-P~----~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N 332 (788)
T PRK15387 268 SIFSNP-LTHL-----P--ALPSGLCKLWIFGN-QLTSL-PV----LPPGLQELSVSDN-QLASLPALPSELCKLWAYNN 332 (788)
T ss_pred eccCCc-hhhh-----h--hchhhcCEEECcCC-ccccc-cc----cccccceeECCCC-ccccCCCCcccccccccccC
Confidence 776652 3332 1 12345666776665 44444 21 2456777777664 34333322222222221112
Q ss_pred ccccCCCccccCCcCEEeeCCCccccccCcCC------------Cc-ccccCCCccEEEEecCCCCCccCChhHHhhcCC
Q 048518 165 EINAEDDQVTFPRLEELELVSLTNIKKLWPDQ------------FQ-GMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQ 231 (259)
Q Consensus 165 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~------------~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 231 (259)
.+..++.. .++|+.|+++++ .++.++... .. .+....+|+.|+++++. ++.+|. . .++
T Consensus 333 ~L~~LP~l--p~~Lq~LdLS~N-~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~-Lt~LP~--l---~s~ 403 (788)
T PRK15387 333 QLTSLPTL--PSGLQELSVSDN-QLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNR-LTSLPV--L---PSE 403 (788)
T ss_pred cccccccc--ccccceEecCCC-ccCCCCCCCcccceehhhccccccCcccccccceEEecCCc-ccCCCC--c---ccC
Confidence 22222210 135666666654 444432110 00 00112467777777653 555554 1 246
Q ss_pred ccEEEEeccc
Q 048518 232 LRHLEIINCW 241 (259)
Q Consensus 232 L~~L~l~~c~ 241 (259)
|+.|+++++.
T Consensus 404 L~~LdLS~N~ 413 (788)
T PRK15387 404 LKELMVSGNR 413 (788)
T ss_pred CCEEEccCCc
Confidence 6777777764
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.21 E-value=2.5e-07 Score=78.22 Aligned_cols=67 Identities=13% Similarity=0.009 Sum_probs=41.7
Q ss_pred ccCCcCEEeeCCCccccccCcCCC-cccccCCCccEEEEecCCCCCccCChhHHhh----cCCccEEEEecccc
Q 048518 174 TFPRLEELELVSLTNIKKLWPDQF-QGMYCCQNLTKVTVTRCCPLKYMFSYSMANS----LGQLRHLEIINCWS 242 (259)
Q Consensus 174 ~l~~L~~L~l~~c~~l~~l~~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~----l~~L~~L~l~~c~~ 242 (259)
.++.|+.|++++| .++....... ..+..+++|++|++++|+ ++......+... .+.|++|++.+|..
T Consensus 191 ~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 191 ANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred hCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 3468999999988 4432221111 113457899999999975 454322223333 36899999998853
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.19 E-value=1.8e-06 Score=80.67 Aligned_cols=32 Identities=9% Similarity=0.045 Sum_probs=16.9
Q ss_pred hccceeeeccccccceeccccCCCCCCCCccEEEEecC
Q 048518 23 KRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGC 60 (259)
Q Consensus 23 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 60 (259)
+.++.|++.++ .++.++.. .+++|+.|+++++
T Consensus 199 ~~L~~L~Ls~N-~LtsLP~~-----l~~nL~~L~Ls~N 230 (754)
T PRK15370 199 EQITTLILDNN-ELKSLPEN-----LQGNIKTLYANSN 230 (754)
T ss_pred cCCcEEEecCC-CCCcCChh-----hccCCCEEECCCC
Confidence 45666666555 34443222 2346666666655
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.16 E-value=7.4e-06 Score=76.71 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=24.5
Q ss_pred CCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEecc
Q 048518 176 PRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINC 240 (259)
Q Consensus 176 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 240 (259)
++|+.|+++++ .++.++... .++|+.|++++|. ++.+|.. +. .+|+.|+++++
T Consensus 346 ~sL~~L~Ls~N-~L~~LP~~l------p~~L~~LdLs~N~-Lt~LP~~-l~---~sL~~LdLs~N 398 (754)
T PRK15370 346 PELQVLDVSKN-QITVLPETL------PPTITTLDVSRNA-LTNLPEN-LP---AALQIMQASRN 398 (754)
T ss_pred CcccEEECCCC-CCCcCChhh------cCCcCEEECCCCc-CCCCCHh-HH---HHHHHHhhccC
Confidence 45555555555 344332211 2456666666553 4444431 11 13455555554
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.11 E-value=1e-06 Score=83.66 Aligned_cols=80 Identities=20% Similarity=0.312 Sum_probs=47.1
Q ss_pred cccCCCccccCCcCEEeeCCCccccccC--cCCCcccc-cCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEecccc
Q 048518 166 INAEDDQVTFPRLEELELVSLTNIKKLW--PDQFQGMY-CCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWS 242 (259)
Q Consensus 166 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~~~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 242 (259)
.+.......++.|+.|.|.+|...+... ..... .. .|+++.++.+.+|..++.... ..--++|+.+++..|+.
T Consensus 707 ~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~-~~~~f~~l~~~~~~~~~~~r~l~~---~~f~~~L~~l~l~~~~~ 782 (889)
T KOG4658|consen 707 RTLISSLGSLGNLEELSILDCGISEIVIEWEESLI-VLLCFPNLSKVSILNCHMLRDLTW---LLFAPHLTSLSLVSCRL 782 (889)
T ss_pred ceeecccccccCcceEEEEcCCCchhhcccccccc-hhhhHHHHHHHHhhccccccccch---hhccCcccEEEEecccc
Confidence 3445566778899999999996543221 11100 11 255666666677776665532 11226677777777777
Q ss_pred ccccccc
Q 048518 243 MEGIVNT 249 (259)
Q Consensus 243 l~~~~~~ 249 (259)
++++...
T Consensus 783 ~e~~i~~ 789 (889)
T KOG4658|consen 783 LEDIIPK 789 (889)
T ss_pred cccCCCH
Confidence 7766443
No 21
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.06 E-value=2.3e-05 Score=67.75 Aligned_cols=58 Identities=19% Similarity=0.189 Sum_probs=33.0
Q ss_pred CCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCC-ccCChhHHhhcCCccEEEEecccccc
Q 048518 176 PRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLK-YMFSYSMANSLGQLRHLEIINCWSME 244 (259)
Q Consensus 176 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~l~~L~~L~l~~c~~l~ 244 (259)
++|+.|.+.+|..+. ++... ..+|+.|++..+..-. .++...++ +++ .|.+.+|-++.
T Consensus 156 sSLk~L~Is~c~~i~-LP~~L------P~SLk~L~ls~n~~~sLeI~~~sLP---~nl-~L~f~n~lkL~ 214 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LPEKL------PESLQSITLHIEQKTTWNISFEGFP---DGL-DIDLQNSVLLS 214 (426)
T ss_pred CcccEEEecCCCccc-Ccccc------cccCcEEEecccccccccCcccccc---ccc-EechhhhcccC
Confidence 479999999886443 22222 2688999987653211 12221222 344 77888775554
No 22
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=4.7e-07 Score=73.83 Aligned_cols=139 Identities=19% Similarity=0.151 Sum_probs=99.1
Q ss_pred hccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccc-cccccccccc
Q 048518 23 KRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTN-LETICYSQLR 101 (259)
Q Consensus 23 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~ 101 (259)
.+|+.|+++.|.+++.....+- +..++.|.+|+++.|......+... ....-++|+.|+|++|.+ +..-....+
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll-~~scs~L~~LNlsWc~l~~~~Vtv~---V~hise~l~~LNlsG~rrnl~~sh~~tL- 308 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLL-LSSCSRLDELNLSWCFLFTEKVTVA---VAHISETLTQLNLSGYRRNLQKSHLSTL- 308 (419)
T ss_pred ccceeeccccccccchhHHHHH-HHhhhhHhhcCchHhhccchhhhHH---HhhhchhhhhhhhhhhHhhhhhhHHHHH-
Confidence 7899999999999987755544 6789999999999997655331111 223347999999998763 222111111
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEE
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEEL 181 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L 181 (259)
...+|+|.+|++++|-.++.. -...+..++-|+.|.++.|+.+-. . .+..+..-|+|.+|
T Consensus 309 -~~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~i~p--~----------------~~~~l~s~psl~yL 368 (419)
T KOG2120|consen 309 -VRRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYDIIP--E----------------TLLELNSKPSLVYL 368 (419)
T ss_pred -HHhCCceeeeccccccccCch-HHHHHHhcchheeeehhhhcCCCh--H----------------HeeeeccCcceEEE
Confidence 468999999999999888764 333345689999999999998732 1 11124456899999
Q ss_pred eeCCC
Q 048518 182 ELVSL 186 (259)
Q Consensus 182 ~l~~c 186 (259)
++.+|
T Consensus 369 dv~g~ 373 (419)
T KOG2120|consen 369 DVFGC 373 (419)
T ss_pred Eeccc
Confidence 99988
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=9.9e-07 Score=75.30 Aligned_cols=182 Identities=22% Similarity=0.282 Sum_probs=104.2
Q ss_pred HHHHHhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeeccccc-cccccc
Q 048518 18 TKMLLKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLT-NLETIC 96 (259)
Q Consensus 18 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~ 96 (259)
....|++++.|+++.. .+..|..-..-.++||+|+.|.++... +...+... ....+++|+.|.++.|. +.+++.
T Consensus 141 ~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~---~~~~l~~lK~L~l~~CGls~k~V~ 215 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSN---TTLLLSHLKQLVLNSCGLSWKDVQ 215 (505)
T ss_pred hhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhccccccc-ccCCcccc---chhhhhhhheEEeccCCCCHHHHH
Confidence 4556899999999875 233332111114689999999999763 33221222 22357899999999885 333332
Q ss_pred cccccCcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCccee-cccCCCCCcccC------CccccccC
Q 048518 97 YSQLREDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMM-IGPDMEKPTTTQ------GFTEINAE 169 (259)
Q Consensus 97 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~l~~------~~~~~~~~ 169 (259)
.. ...||+|+.|++.....+.. ...-...+..|++|++++.+.+..- ....+.++.+.. |.+.+..+
T Consensus 216 ~~----~~~fPsl~~L~L~~N~~~~~--~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~ 289 (505)
T KOG3207|consen 216 WI----LLTFPSLEVLYLEANEIILI--KATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEP 289 (505)
T ss_pred HH----HHhCCcHHHhhhhcccccce--ecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCC
Confidence 11 45789999998877632221 1111245677888888887665331 122333443322 22233222
Q ss_pred -----CCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEec
Q 048518 170 -----DDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTR 213 (259)
Q Consensus 170 -----~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~ 213 (259)
.....||+|+.|++... ++.. |.... .+..+++|++|.+..
T Consensus 290 d~~s~~kt~~f~kL~~L~i~~N-~I~~-w~sl~-~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 290 DVESLDKTHTFPKLEYLNISEN-NIRD-WRSLN-HLRTLENLKHLRITL 335 (505)
T ss_pred CccchhhhcccccceeeecccC-cccc-ccccc-hhhccchhhhhhccc
Confidence 23457899999999987 3433 22211 134466777776543
No 24
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.81 E-value=3.8e-05 Score=48.31 Aligned_cols=60 Identities=25% Similarity=0.320 Sum_probs=49.4
Q ss_pred CCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccc
Q 048518 176 PRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCW 241 (259)
Q Consensus 176 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 241 (259)
|+|+.|+++++ +++.+.... ...+++|++|+++++. ++.++.. ....+++|++|++++|+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~---f~~l~~L~~L~l~~N~-l~~i~~~-~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDS---FSNLPNLETLDLSNNN-LTSIPPD-AFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTT---TTTGTTESEEEETSSS-ESEEETT-TTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHH---HcCCCCCCEeEccCCc-cCccCHH-HHcCCCCCCEEeCcCCc
Confidence 67999999998 899887665 4578999999999654 6888664 46788999999999875
No 25
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.80 E-value=7.9e-05 Score=64.51 Aligned_cols=137 Identities=16% Similarity=0.236 Sum_probs=79.8
Q ss_pred CCCCccEEEEecCcCcceecccccccccCCCCcccEeeccccccccccccccccCcccCCCccEEEEecCCCceEecchh
Q 048518 48 GFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFS 127 (259)
Q Consensus 48 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 127 (259)
.+++++.|++++| .+..+ + ..-++|+.|.+.+|..+..+ | ..-.++|+.|++++|..++.+ |
T Consensus 50 ~~~~l~~L~Is~c-~L~sL-P-------~LP~sLtsL~Lsnc~nLtsL-----P-~~LP~nLe~L~Ls~Cs~L~sL-P-- 111 (426)
T PRK15386 50 EARASGRLYIKDC-DIESL-P-------VLPNELTEITIENCNNLTTL-----P-GSIPEGLEKLTVCHCPEISGL-P-- 111 (426)
T ss_pred HhcCCCEEEeCCC-CCccc-C-------CCCCCCcEEEccCCCCcccC-----C-chhhhhhhheEccCccccccc-c--
Confidence 4577888888888 56554 1 11246888888888777554 2 112357888888888766643 2
Q ss_pred hhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCcccc-CCcCEEeeCCCccccccCcCCCcccccCCCc
Q 048518 128 MAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTF-PRLEELELVSLTNIKKLWPDQFQGMYCCQNL 206 (259)
Q Consensus 128 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L 206 (259)
++|+.|.+.. .....+ ..+ ++|+.|.+.+........... .-.++|
T Consensus 112 -----~sLe~L~L~~-n~~~~L-----------------------~~LPssLk~L~I~~~n~~~~~~lp~----~LPsSL 158 (426)
T PRK15386 112 -----ESVRSLEIKG-SATDSI-----------------------KNVPNGLTSLSINSYNPENQARIDN----LISPSL 158 (426)
T ss_pred -----cccceEEeCC-CCCccc-----------------------ccCcchHhheecccccccccccccc----ccCCcc
Confidence 4577777642 222111 123 357777775432111111100 012789
Q ss_pred cEEEEecCCCCCccCChhHHhhcCCccEEEEecc
Q 048518 207 TKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINC 240 (259)
Q Consensus 207 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 240 (259)
+.|++.+|..+. +|. .++ .+|++|++..+
T Consensus 159 k~L~Is~c~~i~-LP~-~LP---~SLk~L~ls~n 187 (426)
T PRK15386 159 KTLSLTGCSNII-LPE-KLP---ESLQSITLHIE 187 (426)
T ss_pred cEEEecCCCccc-Ccc-ccc---ccCcEEEeccc
Confidence 999999999764 332 233 47788888764
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.80 E-value=1.8e-05 Score=60.84 Aligned_cols=80 Identities=24% Similarity=0.305 Sum_probs=18.2
Q ss_pred CCCccEEEEecCcCcceecccccccccCCCCcccEeeccccccccccccccccCcccCCCccEEEEecCCCceEecchhh
Q 048518 49 FPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFSM 128 (259)
Q Consensus 49 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 128 (259)
...+++|++.++ .+..+ +. ....+.+|+.|+++++. ++.+ ..+..++.|+.|++++. .++.+ ...+
T Consensus 18 ~~~~~~L~L~~n-~I~~I-e~----L~~~l~~L~~L~Ls~N~-I~~l-----~~l~~L~~L~~L~L~~N-~I~~i-~~~l 83 (175)
T PF14580_consen 18 PVKLRELNLRGN-QISTI-EN----LGATLDKLEVLDLSNNQ-ITKL-----EGLPGLPRLKTLDLSNN-RISSI-SEGL 83 (175)
T ss_dssp --------------------S------TT-TT--EEE-TTS---S-------TT----TT--EEE--SS----S--CHHH
T ss_pred cccccccccccc-ccccc-cc----hhhhhcCCCEEECCCCC-Cccc-----cCccChhhhhhcccCCC-CCCcc-ccch
Confidence 335666776665 23322 11 11135666777766542 2222 11345667777777665 45444 2223
Q ss_pred hhhcCCCcEEEEEe
Q 048518 129 AKNLLGLQKVEVVN 142 (259)
Q Consensus 129 ~~~l~~L~~L~l~~ 142 (259)
.+.+|+|++|.+++
T Consensus 84 ~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 84 DKNLPNLQELYLSN 97 (175)
T ss_dssp HHH-TT--EEE-TT
T ss_pred HHhCCcCCEEECcC
Confidence 34566666666654
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.76 E-value=6.6e-06 Score=76.32 Aligned_cols=126 Identities=17% Similarity=0.212 Sum_probs=85.0
Q ss_pred cccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCC---CcccCCccccccCCCccccCCcC
Q 048518 103 DQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEK---PTTTQGFTEINAEDDQVTFPRLE 179 (259)
Q Consensus 103 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~---~~l~~~~~~~~~~~~~~~l~~L~ 179 (259)
+..++.||.||+++. .+..+ |.....++..|++|++++ +.++.++...... ..+....+.+..+|++..++.|+
T Consensus 379 l~~~~hLKVLhLsyN-rL~~f-pas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~ 455 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYN-RLNSF-PASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLK 455 (1081)
T ss_pred hccccceeeeeeccc-ccccC-CHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcce
Confidence 568899999999886 56654 777778899999999998 4566655433332 23445667778888888999999
Q ss_pred EEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEE
Q 048518 180 ELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEI 237 (259)
Q Consensus 180 ~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l 237 (259)
.++++.. +|+.+..... . -.++|++|++++...+..- ......+..+..+++
T Consensus 456 ~lDlS~N-~L~~~~l~~~--~-p~p~LkyLdlSGN~~l~~d--~~~l~~l~~l~~~~i 507 (1081)
T KOG0618|consen 456 VLDLSCN-NLSEVTLPEA--L-PSPNLKYLDLSGNTRLVFD--HKTLKVLKSLSQMDI 507 (1081)
T ss_pred EEecccc-hhhhhhhhhh--C-CCcccceeeccCCcccccc--hhhhHHhhhhhheec
Confidence 9999854 7776644322 1 1289999999998864332 223334444444443
No 28
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.74 E-value=8.5e-05 Score=46.66 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=19.0
Q ss_pred CCccEEEEecCCCceEecchhhhhhcCCCcEEEEEe
Q 048518 107 SNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVN 142 (259)
Q Consensus 107 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 142 (259)
|+|++|++.++ +++.+ +...++++++|+.|++++
T Consensus 1 p~L~~L~l~~n-~l~~i-~~~~f~~l~~L~~L~l~~ 34 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEI-PPDSFSNLPNLETLDLSN 34 (61)
T ss_dssp TTESEEEETSS-TESEE-CTTTTTTGTTESEEEETS
T ss_pred CcCcEEECCCC-CCCcc-CHHHHcCCCCCCEeEccC
Confidence 45566666665 55555 333345566666666663
No 29
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.53 E-value=2.2e-05 Score=70.02 Aligned_cols=64 Identities=20% Similarity=0.286 Sum_probs=33.7
Q ss_pred cCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEecc
Q 048518 175 FPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINC 240 (259)
Q Consensus 175 l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 240 (259)
++.|+.|.+..|..++.-..... ...+++|++|++++|..+++..-..+..+|++|+.+.+.++
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i--~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSI--AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred CCCcceEccCCCCccchhHHHHH--HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 56666666666655433221111 33456677777777776655433334455666555544433
No 30
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.51 E-value=1.7e-05 Score=67.43 Aligned_cols=41 Identities=22% Similarity=0.222 Sum_probs=33.5
Q ss_pred cccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccccc
Q 048518 200 MYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWSM 243 (259)
Q Consensus 200 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 243 (259)
+.++.+|..|++.+.+ +..+|+ +.+++.+|++|+++|.+--
T Consensus 501 l~nm~nL~tLDL~nNd-lq~IPp--~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQNND-LQQIPP--ILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhhhcceeccCCCc-hhhCCh--hhccccceeEEEecCCccC
Confidence 5677889999997754 777887 7899999999999988643
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.49 E-value=2.7e-06 Score=71.87 Aligned_cols=63 Identities=24% Similarity=0.366 Sum_probs=34.8
Q ss_pred ccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEecc
Q 048518 172 QVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINC 240 (259)
Q Consensus 172 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 240 (259)
+..+|.|+.|++++. .++.+....+ .....++.|.+.+. ++..+.. .+...+..|+.|++++.
T Consensus 270 f~~L~~L~~lnlsnN-~i~~i~~~aF---e~~a~l~eL~L~~N-~l~~v~~-~~f~~ls~L~tL~L~~N 332 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNN-KITRIEDGAF---EGAAELQELYLTRN-KLEFVSS-GMFQGLSGLKTLSLYDN 332 (498)
T ss_pred HhhcccceEeccCCC-ccchhhhhhh---cchhhhhhhhcCcc-hHHHHHH-HhhhccccceeeeecCC
Confidence 456799999999987 7776654442 23345555555442 2333322 23444555555555543
No 32
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.47 E-value=1.7e-06 Score=73.33 Aligned_cols=73 Identities=14% Similarity=0.100 Sum_probs=44.5
Q ss_pred CccccccCCC--ccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEec
Q 048518 162 GFTEINAEDD--QVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIIN 239 (259)
Q Consensus 162 ~~~~~~~~~~--~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 239 (259)
|.+.++..+. ..++++|..|++.+. +++..+... .-+.+|+.||+++.. ++.+|. -.+++ .|+.|.+.|
T Consensus 236 g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~----clLrsL~rLDlSNN~-is~Lp~--sLgnl-hL~~L~leG 306 (565)
T KOG0472|consen 236 GENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEI----CLLRSLERLDLSNND-ISSLPY--SLGNL-HLKFLALEG 306 (565)
T ss_pred cccHHHhhHHHHhcccccceeeecccc-ccccCchHH----HHhhhhhhhcccCCc-cccCCc--ccccc-eeeehhhcC
Confidence 4445555542 246777777777776 666665543 235677777877644 566654 34555 667777777
Q ss_pred cccc
Q 048518 240 CWSM 243 (259)
Q Consensus 240 c~~l 243 (259)
.|.-
T Consensus 307 NPlr 310 (565)
T KOG0472|consen 307 NPLR 310 (565)
T ss_pred CchH
Confidence 6543
No 33
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.40 E-value=4.4e-06 Score=63.13 Aligned_cols=45 Identities=16% Similarity=0.105 Sum_probs=24.0
Q ss_pred CccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccC
Q 048518 171 DQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMF 221 (259)
Q Consensus 171 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 221 (259)
+...+++|+-|.+.+. .+-+++.. ++.+..|+.|+|.+.+ ++-+|
T Consensus 145 dvg~lt~lqil~lrdn-dll~lpke----ig~lt~lrelhiqgnr-l~vlp 189 (264)
T KOG0617|consen 145 DVGKLTNLQILSLRDN-DLLSLPKE----IGDLTRLRELHIQGNR-LTVLP 189 (264)
T ss_pred hhhhhcceeEEeeccC-chhhCcHH----HHHHHHHHHHhcccce-eeecC
Confidence 3455666666666665 33333332 3345666666666644 44444
No 34
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.38 E-value=8.2e-05 Score=69.22 Aligned_cols=15 Identities=13% Similarity=0.222 Sum_probs=8.8
Q ss_pred ccccCCcCEEeeCCC
Q 048518 172 QVTFPRLEELELVSL 186 (259)
Q Consensus 172 ~~~l~~L~~L~l~~c 186 (259)
+.++++|+.|+|+.-
T Consensus 216 LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRD 230 (699)
T ss_pred HhcccCCCeeecccc
Confidence 344566666666654
No 35
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.34 E-value=7.9e-05 Score=69.32 Aligned_cols=135 Identities=12% Similarity=0.103 Sum_probs=80.1
Q ss_pred CcccEeeccccccccccccccccCcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCc
Q 048518 79 PLLESLDLINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPT 158 (259)
Q Consensus 79 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 158 (259)
.+|+.|+|++-..+..-|.... ...+|+|+.|.+.+-.-..+. .....+++|+|..|+|++++-- .+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~ki--g~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~-nl--------- 188 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKI--GTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNIS-NL--------- 188 (699)
T ss_pred HhhhhcCccccchhhccHHHHH--hhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCcc-Cc---------
Confidence 5788888887665555554333 367888888888774332322 2334568888888888886322 21
Q ss_pred ccCCccccccCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCCh----hHHhhcCCccE
Q 048518 159 TTQGFTEINAEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSY----SMANSLGQLRH 234 (259)
Q Consensus 159 l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~----~~~~~l~~L~~ 234 (259)
..+.++++|+.|.+.+.+ ++.-. ....+.++.+|+.|||++-++...--.. .....+|+|+.
T Consensus 189 -----------~GIS~LknLq~L~mrnLe-~e~~~--~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrf 254 (699)
T KOG3665|consen 189 -----------SGISRLKNLQVLSMRNLE-FESYQ--DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRF 254 (699)
T ss_pred -----------HHHhccccHHHHhccCCC-CCchh--hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccE
Confidence 124457777777777662 22210 0001346789999999886664433100 01123688888
Q ss_pred EEEecc
Q 048518 235 LEIINC 240 (259)
Q Consensus 235 L~l~~c 240 (259)
|+.++-
T Consensus 255 LDcSgT 260 (699)
T KOG3665|consen 255 LDCSGT 260 (699)
T ss_pred EecCCc
Confidence 887754
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.31 E-value=0.00016 Score=55.63 Aligned_cols=128 Identities=16% Similarity=0.157 Sum_probs=49.5
Q ss_pred CCcccEeeccccc--cccccccccccCcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCC
Q 048518 78 FPLLESLDLINLT--NLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDME 155 (259)
Q Consensus 78 ~~~L~~L~l~~~~--~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 155 (259)
.-+++.|++.++. .++.. ...+.+|+.|+++++ .++.+ . ....++.|+.|++++. .+..+..
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~L-------~~~l~~L~~L~Ls~N-~I~~l-~--~l~~L~~L~~L~L~~N-~I~~i~~---- 81 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIENL-------GATLDKLEVLDLSNN-QITKL-E--GLPGLPRLKTLDLSNN-RISSISE---- 81 (175)
T ss_dssp ------------------S---------TT-TT--EEE-TTS---S---T--T----TT--EEE--SS----S-CH----
T ss_pred ccccccccccccccccccch-------hhhhcCCCEEECCCC-CCccc-c--CccChhhhhhcccCCC-CCCcccc----
Confidence 3467888888752 33322 125789999999998 55554 2 1346889999998874 3333210
Q ss_pred CCcccCCccccccCCCc-cccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCC--hhHHhhcCCc
Q 048518 156 KPTTTQGFTEINAEDDQ-VTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFS--YSMANSLGQL 232 (259)
Q Consensus 156 ~~~l~~~~~~~~~~~~~-~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L 232 (259)
.+ ..+|+|+.|.+.+. .+..+..- .....+++|+.|++.++|- ...+. .-++..+|+|
T Consensus 82 ---------------~l~~~lp~L~~L~L~~N-~I~~l~~l--~~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~L 142 (175)
T PF14580_consen 82 ---------------GLDKNLPNLQELYLSNN-KISDLNEL--EPLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSL 142 (175)
T ss_dssp ---------------HHHHH-TT--EEE-TTS----SCCCC--GGGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-
T ss_pred ---------------chHHhCCcCCEEECcCC-cCCChHHh--HHHHcCCCcceeeccCCcc-cchhhHHHHHHHHcChh
Confidence 11 25899999999987 66665332 2256789999999999884 33332 1256788999
Q ss_pred cEEEEecc
Q 048518 233 RHLEIINC 240 (259)
Q Consensus 233 ~~L~l~~c 240 (259)
+.||-...
T Consensus 143 k~LD~~~V 150 (175)
T PF14580_consen 143 KVLDGQDV 150 (175)
T ss_dssp SEETTEET
T ss_pred heeCCEEc
Confidence 99987655
No 37
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.15 E-value=1.6e-05 Score=60.17 Aligned_cols=152 Identities=20% Similarity=0.190 Sum_probs=92.9
Q ss_pred CCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc-CcccCCCccEEEEecCCCceEecch
Q 048518 48 GFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR-EDQSFSNLRIIYVYSCPKLKYLFSF 126 (259)
Q Consensus 48 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~ 126 (259)
.+.+...|.++.. ++..+++ ....+.+|+.|.+.+- .++.+ | .+.+++.|+.|++.-. ++... |.
T Consensus 31 ~~s~ITrLtLSHN-Kl~~vpp-----nia~l~nlevln~~nn-qie~l-----p~~issl~klr~lnvgmn-rl~~l-pr 96 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLTVVPP-----NIAELKNLEVLNLSNN-QIEEL-----PTSISSLPKLRILNVGMN-RLNIL-PR 96 (264)
T ss_pred chhhhhhhhcccC-ceeecCC-----cHHHhhhhhhhhcccc-hhhhc-----Chhhhhchhhhheecchh-hhhcC-cc
Confidence 3445556666655 3333312 1223556666666553 22222 2 3677888888888543 45433 55
Q ss_pred hhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCc
Q 048518 127 SMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNL 206 (259)
Q Consensus 127 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L 206 (259)
.+ +.+|.|+.|++...+--+.. +++.+..++.|+.|.+.+. ..+.++++ ++.+++|
T Consensus 97 gf-gs~p~levldltynnl~e~~------------------lpgnff~m~tlralyl~dn-dfe~lp~d----vg~lt~l 152 (264)
T KOG0617|consen 97 GF-GSFPALEVLDLTYNNLNENS------------------LPGNFFYMTTLRALYLGDN-DFEILPPD----VGKLTNL 152 (264)
T ss_pred cc-CCCchhhhhhcccccccccc------------------CCcchhHHHHHHHHHhcCC-CcccCChh----hhhhcce
Confidence 44 56888888888875333221 1123444577888888887 66776665 4467888
Q ss_pred cEEEEecCCCCCccCChhHHhhcCCccEEEEecc
Q 048518 207 TKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINC 240 (259)
Q Consensus 207 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 240 (259)
+-|.++..+ +-++|. .++.+..|++|++.+.
T Consensus 153 qil~lrdnd-ll~lpk--eig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 153 QILSLRDND-LLSLPK--EIGDLTRLRELHIQGN 183 (264)
T ss_pred eEEeeccCc-hhhCcH--HHHHHHHHHHHhcccc
Confidence 888888866 445665 5677888999998875
No 38
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.90 E-value=0.00016 Score=67.54 Aligned_cols=53 Identities=23% Similarity=0.092 Sum_probs=27.1
Q ss_pred CCCccEEEEecCcCcceecccccccccCCCCcccEeeccc--cccccccccccccCcccCCCccEEEEe
Q 048518 49 FPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLIN--LTNLETICYSQLREDQSFSNLRIIYVY 115 (259)
Q Consensus 49 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~--~~~l~~~~~~~~~~~~~~~~L~~L~l~ 115 (259)
-++|+.|..+.|+..+.. ....-.+|++++++. ..++.+| +..+++|+.+...
T Consensus 218 g~~l~~L~a~~n~l~~~~-------~~p~p~nl~~~dis~n~l~~lp~w-------i~~~~nle~l~~n 272 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTLD-------VHPVPLNLQYLDISHNNLSNLPEW-------IGACANLEALNAN 272 (1081)
T ss_pred CcchheeeeccCcceeec-------cccccccceeeecchhhhhcchHH-------HHhcccceEeccc
Confidence 456777777777654321 111224677777753 3344443 3445555555443
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.64 E-value=0.0039 Score=59.82 Aligned_cols=131 Identities=21% Similarity=0.226 Sum_probs=74.8
Q ss_pred ccCCCCcccEeeccccccccccc--cccccCccc-CCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceec
Q 048518 74 RCEVFPLLESLDLINLTNLETIC--YSQLREDQS-FSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMI 150 (259)
Q Consensus 74 ~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~-~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 150 (259)
....+.+|+.|.|.+|....... .... .... |+++..+.+.+|..+....+. ...++|+.|.+.+|..++++.
T Consensus 712 ~~~~l~~L~~L~i~~~~~~e~~~~~~~~~-~~~~~f~~l~~~~~~~~~~~r~l~~~---~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 712 SLGSLGNLEELSILDCGISEIVIEWEESL-IVLLCFPNLSKVSILNCHMLRDLTWL---LFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred ccccccCcceEEEEcCCCchhhccccccc-chhhhHHHHHHHHhhccccccccchh---hccCcccEEEEecccccccCC
Confidence 34456778888887776654321 1000 0122 667777777777666654332 235778888888887777654
Q ss_pred ccCCCCCcccCCccccccCCCccccCCcCEE-eeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccC
Q 048518 151 GPDMEKPTTTQGFTEINAEDDQVTFPRLEEL-ELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMF 221 (259)
Q Consensus 151 ~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L-~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 221 (259)
.....+..+.. ....++++..+ .+.+...+..++.... .++.|+.+.+..||+++.+|
T Consensus 788 ~~~k~~~~l~~---------~i~~f~~~~~l~~~~~l~~l~~i~~~~l----~~~~l~~~~ve~~p~l~~~P 846 (889)
T KOG4658|consen 788 PKLKALLELKE---------LILPFNKLEGLRMLCSLGGLPQLYWLPL----SFLKLEELIVEECPKLGKLP 846 (889)
T ss_pred CHHHHhhhccc---------EEecccccccceeeecCCCCceeEeccc----CccchhheehhcCcccccCc
Confidence 43322211100 12335555555 4666666666655432 24558888888888877664
No 40
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.00044 Score=53.66 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=16.6
Q ss_pred CCcccEeeccccccccccccccccCcccCCCccEEEEecC
Q 048518 78 FPLLESLDLINLTNLETICYSQLREDQSFSNLRIIYVYSC 117 (259)
Q Consensus 78 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c 117 (259)
.++|+.|+|++|+++++..... ...+++|+.|++.+.
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~---L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLAC---LLKLKNLRRLHLYDL 186 (221)
T ss_pred ccchheeeccCCCeechhHHHH---HHHhhhhHHHHhcCc
Confidence 4455555555555544432222 124455555554443
No 41
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.00084 Score=52.12 Aligned_cols=71 Identities=15% Similarity=0.215 Sum_probs=57.1
Q ss_pred ccCCCCcccEeeccccccccccccccccCcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcc
Q 048518 74 RCEVFPLLESLDLINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLK 147 (259)
Q Consensus 74 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 147 (259)
....++.+++|.+.+|+.+.+|+...+. +-.++|+.|+|++|+.+++-.... ...+++|+.|.+.+.+...
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~--~~~~~L~~L~lsgC~rIT~~GL~~-L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLG--GLAPSLQDLDLSGCPRITDGGLAC-LLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhc--ccccchheeeccCCCeechhHHHH-HHHhhhhHHHHhcCchhhh
Confidence 3456789999999999999999876664 378999999999999999774443 3578999999888866543
No 42
>PLN03150 hypothetical protein; Provisional
Probab=96.23 E-value=0.012 Score=54.62 Aligned_cols=110 Identities=10% Similarity=0.041 Sum_probs=66.9
Q ss_pred ccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEeeCCCcc
Q 048518 109 LRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELELVSLTN 188 (259)
Q Consensus 109 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 188 (259)
++.|++.++ .+....|..+ ..+++|+.|+++++.-...++. .+..+++|+.|+++++ .
T Consensus 420 v~~L~L~~n-~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~-------------------~~~~l~~L~~LdLs~N-~ 477 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPP-------------------SLGSITSLEVLDLSYN-S 477 (623)
T ss_pred EEEEECCCC-CccccCCHHH-hCCCCCCEEECCCCcccCcCCh-------------------HHhCCCCCCEEECCCC-C
Confidence 566777765 4555545544 5788888888888644333321 2445788888888887 4
Q ss_pred ccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEecccccc
Q 048518 189 IKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWSME 244 (259)
Q Consensus 189 l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 244 (259)
+....+.. +..+++|+.|+++++..-..+|. .+.....++..+++.+++.+.
T Consensus 478 lsg~iP~~---l~~L~~L~~L~Ls~N~l~g~iP~-~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 478 FNGSIPES---LGQLTSLRILNLNGNSLSGRVPA-ALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCCCCchH---HhcCCCCCEEECcCCcccccCCh-HHhhccccCceEEecCCcccc
Confidence 43221211 45678889999888775445554 222223455677777665443
No 43
>PLN03150 hypothetical protein; Provisional
Probab=96.20 E-value=0.01 Score=55.17 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=31.8
Q ss_pred CCCcccEeecccccccccccccccc-CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccC
Q 048518 77 VFPLLESLDLINLTNLETICYSQLR-EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNK 145 (259)
Q Consensus 77 ~~~~L~~L~l~~~~~l~~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 145 (259)
.+++|+.|+++++. +.. .+| .+..+++|+.|+++++ .+....|..+ .++++|+.|+++++..
T Consensus 440 ~L~~L~~L~Ls~N~-l~g----~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l-~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 440 KLRHLQSINLSGNS-IRG----NIPPSLGSITSLEVLDLSYN-SFNGSIPESL-GQLTSLRILNLNGNSL 502 (623)
T ss_pred CCCCCCEEECCCCc-ccC----cCChHHhCCCCCCEEECCCC-CCCCCCchHH-hcCCCCCEEECcCCcc
Confidence 45666666666542 211 112 2455666666666665 3433334333 4566666666666543
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.96 E-value=0.0031 Score=52.92 Aligned_cols=68 Identities=13% Similarity=0.032 Sum_probs=32.6
Q ss_pred ccCCcCEEeeCCCccccccCcCCCc--ccccCCCccEEEEecCCCCCccCC--hhHHhhcCCccEEEEecccc
Q 048518 174 TFPRLEELELVSLTNIKKLWPDQFQ--GMYCCQNLTKVTVTRCCPLKYMFS--YSMANSLGQLRHLEIINCWS 242 (259)
Q Consensus 174 ~l~~L~~L~l~~c~~l~~l~~~~~~--~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~~L~l~~c~~ 242 (259)
.+|.|+.|++.+| .++.=...... .-...|+|+.|.+.++.-=++-.. ..-+..-+.|+.|++++|.-
T Consensus 239 s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 239 SWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 4566777777777 44322111100 012356777777766553211100 00112356777777776643
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.87 E-value=0.0016 Score=53.81 Aligned_cols=16 Identities=31% Similarity=0.343 Sum_probs=11.2
Q ss_pred CccccCCcCEEeeCCC
Q 048518 171 DQVTFPRLEELELVSL 186 (259)
Q Consensus 171 ~~~~l~~L~~L~l~~c 186 (259)
.+.++|+|+.+.+.+.
T Consensus 394 ~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 394 HIGNLPCLETLRLTGN 409 (490)
T ss_pred ccccccHHHHHhhcCC
Confidence 3556788887777765
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.79 E-value=0.013 Score=34.02 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=21.1
Q ss_pred CCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCcc
Q 048518 176 PRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYM 220 (259)
Q Consensus 176 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 220 (259)
|+|+.|+++++ .++.+... +..+++|+.|++++++ ++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~----l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPE----LSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGH----GTTCTTSSEEEETSSC-CSBE
T ss_pred CcceEEEccCC-CCcccCch----HhCCCCCCEEEecCCC-CCCC
Confidence 35666666666 55555331 3356666677766663 4444
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.57 E-value=0.015 Score=33.70 Aligned_cols=39 Identities=18% Similarity=0.248 Sum_probs=29.5
Q ss_pred CCccEEEEecCCCCCccCChhHHhhcCCccEEEEecccccccc
Q 048518 204 QNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWSMEGI 246 (259)
Q Consensus 204 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 246 (259)
++|++|+++++ .+++++. .+.++++|++|++++++ +.++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~--~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPP--ELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp TT-SEEEETSS-S-SSHGG--HGTTCTTSSEEEETSSC-CSBE
T ss_pred CcceEEEccCC-CCcccCc--hHhCCCCCCEEEecCCC-CCCC
Confidence 57999999887 4788876 47899999999999994 4443
No 48
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=95.33 E-value=0.00089 Score=57.10 Aligned_cols=86 Identities=15% Similarity=0.080 Sum_probs=46.6
Q ss_pred cchhhhhhcCCCcEEEEEeccCcceecccCCCCC------cccCCccccccCC--CccccCCcCEEeeCCCccccccCcC
Q 048518 124 FSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKP------TTTQGFTEINAED--DQVTFPRLEELELVSLTNIKKLWPD 195 (259)
Q Consensus 124 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~------~l~~~~~~~~~~~--~~~~l~~L~~L~l~~c~~l~~l~~~ 195 (259)
.|..-++.+++|+.|++++. .+..+ .++.+. .+.-+.+.++.+. -+..+..|+.|++++. .++.+...
T Consensus 265 cP~~cf~~L~~L~~lnlsnN-~i~~i--~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~ 340 (498)
T KOG4237|consen 265 CPAKCFKKLPNLRKLNLSNN-KITRI--EDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPG 340 (498)
T ss_pred ChHHHHhhcccceEeccCCC-ccchh--hhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCC-eeEEEecc
Confidence 35445567888888888774 33332 122221 1111222232222 2455677888888886 66665444
Q ss_pred CCcccccCCCccEEEEecCCC
Q 048518 196 QFQGMYCCQNLTKVTVTRCCP 216 (259)
Q Consensus 196 ~~~~~~~~~~L~~L~l~~c~~ 216 (259)
. .....+|.+|.+-..|.
T Consensus 341 a---F~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 341 A---FQTLFSLSTLNLLSNPF 358 (498)
T ss_pred c---ccccceeeeeehccCcc
Confidence 4 33456777777765554
No 49
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.53 E-value=0.0059 Score=50.55 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=16.1
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecC
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGC 60 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 60 (259)
.+.++.|+++.+ ++..+ ..+..+++|..|++++.
T Consensus 306 ~Pkir~L~lS~N-~i~~v----~nLa~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 306 APKLRRLILSQN-RIRTV----QNLAELPQLQLLDLSGN 339 (490)
T ss_pred ccceeEEecccc-ceeee----hhhhhcccceEeecccc
Confidence 455555555544 22222 11334555666665554
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=94.36 E-value=0.0045 Score=51.98 Aligned_cols=176 Identities=16% Similarity=0.052 Sum_probs=83.8
Q ss_pred CCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccc---c-----ccc-CcccCCCccEEEEecC
Q 048518 47 EGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICY---S-----QLR-EDQSFSNLRIIYVYSC 117 (259)
Q Consensus 47 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~-----~~~-~~~~~~~L~~L~l~~c 117 (259)
.+.|.|+.|+++++---..-++ .+..-...+..|+.|.+.+|.-=..-.. . +.. ..++-+.|+.+.....
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~-~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIR-GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred hcCCceeEeeccccccCccchH-HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 4567888888886632221101 1111123356777777777642111000 0 011 2345566777776654
Q ss_pred CCceEecc---hhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEeeCCCccccccCc
Q 048518 118 PKLKYLFS---FSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELELVSLTNIKKLWP 194 (259)
Q Consensus 118 ~~l~~~~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 194 (259)
++.+... ...++..+.|+.+.+....--.. +. . .....+..+|.|+.|++.+. .++.-..
T Consensus 168 -rlen~ga~~~A~~~~~~~~leevr~~qN~I~~e-----G~-~---------al~eal~~~~~LevLdl~DN-tft~egs 230 (382)
T KOG1909|consen 168 -RLENGGATALAEAFQSHPTLEEVRLSQNGIRPE-----GV-T---------ALAEALEHCPHLEVLDLRDN-TFTLEGS 230 (382)
T ss_pred -ccccccHHHHHHHHHhccccceEEEecccccCc-----hh-H---------HHHHHHHhCCcceeeecccc-hhhhHHH
Confidence 3433211 12234556677776665332111 00 0 00012345677777777776 3332211
Q ss_pred CCCc-ccccCCCccEEEEecCCCCCccCChhH----HhhcCCccEEEEeccc
Q 048518 195 DQFQ-GMYCCQNLTKVTVTRCCPLKYMFSYSM----ANSLGQLRHLEIINCW 241 (259)
Q Consensus 195 ~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~----~~~l~~L~~L~l~~c~ 241 (259)
..+. ....+++|+.|.+.+|- ++.-...++ -...|.|+.+.+.+|.
T Consensus 231 ~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 231 VALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred HHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcch
Confidence 1111 24456777777777775 343332222 2335677777776653
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.92 E-value=0.053 Score=45.06 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=25.6
Q ss_pred HHHHhccceeeeccccccceeccccCCCCCCCCccEEEEecCc
Q 048518 19 KMLLKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCS 61 (259)
Q Consensus 19 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 61 (259)
...++.++.+++.++ .+.+|.....-.+++|.|+.|+++..+
T Consensus 67 ~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~ 108 (418)
T KOG2982|consen 67 GSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNS 108 (418)
T ss_pred HHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCc
Confidence 334677777777665 345553321114688888888888554
No 52
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.50 E-value=0.0045 Score=50.67 Aligned_cols=31 Identities=16% Similarity=0.402 Sum_probs=15.3
Q ss_pred CCccEEEEecCCCceEecchhhhhhcCCCcEEEEE
Q 048518 107 SNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVV 141 (259)
Q Consensus 107 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 141 (259)
.+.++|++.+| .+.++ .+...++.|+.|.++
T Consensus 19 ~~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLS 49 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDI---SICEKMPLLEVLSLS 49 (388)
T ss_pred HHhhhhcccCC-CccHH---HHHHhcccceeEEee
Confidence 34455555555 34433 233455555555544
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.17 E-value=0.26 Score=38.68 Aligned_cols=91 Identities=13% Similarity=0.188 Sum_probs=52.9
Q ss_pred cccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEe
Q 048518 103 DQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELE 182 (259)
Q Consensus 103 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~ 182 (259)
+..++.|..|.+.+. +++.+-| .....+++|..|.+.+. .++++.. +..+..+|+|++|.
T Consensus 60 lp~l~rL~tLll~nN-rIt~I~p-~L~~~~p~l~~L~LtnN-si~~l~d-----------------l~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNN-RITRIDP-DLDTFLPNLKTLILTNN-SIQELGD-----------------LDPLASCPKLEYLT 119 (233)
T ss_pred CCCccccceEEecCC-cceeecc-chhhhccccceEEecCc-chhhhhh-----------------cchhccCCccceee
Confidence 346778888888765 6676633 44556788888888773 3332211 11345678888888
Q ss_pred eCCCccccccCcCCCcccccCCCccEEEEecC
Q 048518 183 LVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRC 214 (259)
Q Consensus 183 l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c 214 (259)
+-+.+ ++.........+..+|+|+.||...-
T Consensus 120 ll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 87763 22211111112445678888887653
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.10 E-value=0.037 Score=44.78 Aligned_cols=14 Identities=7% Similarity=0.154 Sum_probs=7.5
Q ss_pred ccCCCccEEEEecC
Q 048518 104 QSFSNLRIIYVYSC 117 (259)
Q Consensus 104 ~~~~~L~~L~l~~c 117 (259)
..+|+|++|.++..
T Consensus 62 P~Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 62 PKLPKLKKLELSDN 75 (260)
T ss_pred CCcchhhhhcccCC
Confidence 35555666655443
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.09 E-value=0.13 Score=40.30 Aligned_cols=87 Identities=20% Similarity=0.230 Sum_probs=49.3
Q ss_pred CCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccc--ccccccccccccCcccCCCccEEEEecCCCceEe-
Q 048518 47 EGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINL--TNLETICYSQLREDQSFSNLRIIYVYSCPKLKYL- 123 (259)
Q Consensus 47 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~- 123 (259)
..+++|..|.+.+. .+..+ +.. ....+|+|+.|.+.+- ..+.++- ....+|.|++|.+.+.+--..-
T Consensus 61 p~l~rL~tLll~nN-rIt~I-~p~---L~~~~p~l~~L~LtnNsi~~l~dl~-----pLa~~p~L~~Ltll~Npv~~k~~ 130 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNN-RITRI-DPD---LDTFLPNLKTLILTNNSIQELGDLD-----PLASCPKLEYLTLLGNPVEHKKN 130 (233)
T ss_pred CCccccceEEecCC-cceee-ccc---hhhhccccceEEecCcchhhhhhcc-----hhccCCccceeeecCCchhcccC
Confidence 36677778877766 34444 221 2334678888888762 2333331 1457788888887766422110
Q ss_pred cchhhhhhcCCCcEEEEEec
Q 048518 124 FSFSMAKNLLGLQKVEVVNC 143 (259)
Q Consensus 124 ~~~~~~~~l~~L~~L~l~~c 143 (259)
.-..+...+|+|+.|++.+-
T Consensus 131 YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 131 YRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ceeEEEEecCcceEeehhhh
Confidence 01123345788888877653
No 56
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.88 E-value=0.074 Score=23.95 Aligned_cols=10 Identities=10% Similarity=0.179 Sum_probs=3.4
Q ss_pred ccEEEEecCC
Q 048518 206 LTKVTVTRCC 215 (259)
Q Consensus 206 L~~L~l~~c~ 215 (259)
|+.|++++|.
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3444444443
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=92.82 E-value=0.0087 Score=55.18 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=22.2
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcC
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSE 62 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 62 (259)
+.+++.|.+...+.-.-. .... +-.|.+||.|.+.+|+.
T Consensus 83 lqkt~~lkl~~~pa~~pt-~pi~-ifpF~sLr~LElrg~~L 121 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPT-EPIS-IFPFRSLRVLELRGCDL 121 (1096)
T ss_pred HhhheeeeecccCCCCCC-CCce-eccccceeeEEecCcch
Confidence 455555555444332111 1222 55778999999999963
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.57 E-value=1.1 Score=32.08 Aligned_cols=9 Identities=11% Similarity=0.519 Sum_probs=3.8
Q ss_pred cCCcCEEee
Q 048518 175 FPRLEELEL 183 (259)
Q Consensus 175 l~~L~~L~l 183 (259)
++.|+.+.+
T Consensus 80 ~~~l~~i~~ 88 (129)
T PF13306_consen 80 CTNLKNIDI 88 (129)
T ss_dssp -TTECEEEE
T ss_pred ccccccccc
Confidence 344444444
No 59
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=91.19 E-value=0.28 Score=42.85 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=14.4
Q ss_pred CCCccEEEEecCCCCCccCChhHHhhcCCccEEEEec
Q 048518 203 CQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIIN 239 (259)
Q Consensus 203 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 239 (259)
+++++.|+++++. +.+++. ...+.+++++++++
T Consensus 254 l~~l~~L~~s~n~-i~~i~~---~~~~~~l~~L~~s~ 286 (394)
T COG4886 254 LSNLETLDLSNNQ-ISSISS---LGSLTNLRELDLSG 286 (394)
T ss_pred ccccceecccccc-cccccc---ccccCccCEEeccC
Confidence 3445555554433 333322 23344555555544
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.73 E-value=1.3 Score=31.62 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=14.0
Q ss_pred ccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEE
Q 048518 104 QSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEV 140 (259)
Q Consensus 104 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l 140 (259)
..+++++.+.+.. .+..+ ....+..+++|+.+.+
T Consensus 55 ~~~~~l~~i~~~~--~~~~i-~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 55 SNCKSLESITFPN--NLKSI-GDNAFSNCTNLKNIDI 88 (129)
T ss_dssp TT-TT-EEEEETS--TT-EE--TTTTTT-TTECEEEE
T ss_pred ecccccccccccc--ccccc-cccccccccccccccc
Confidence 3444566666643 33333 2223344566666655
No 61
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=90.59 E-value=0.014 Score=52.36 Aligned_cols=173 Identities=16% Similarity=0.147 Sum_probs=82.6
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
|..|+.+.++.+. +..++.. +.++..|..|+++... +..+ +. .. .+--|+.|-+++- ++..+ +.
T Consensus 97 f~~Le~liLy~n~-~r~ip~~---i~~L~~lt~l~ls~Nq-lS~l-p~----~l-C~lpLkvli~sNN-kl~~l---p~- 160 (722)
T KOG0532|consen 97 FVSLESLILYHNC-IRTIPEA---ICNLEALTFLDLSSNQ-LSHL-PD----GL-CDLPLKVLIVSNN-KLTSL---PE- 160 (722)
T ss_pred HHHHHHHHHHhcc-ceecchh---hhhhhHHHHhhhccch-hhcC-Ch----hh-hcCcceeEEEecC-ccccC---Cc-
Confidence 5666666665542 3333322 4466667777766552 2222 11 11 1223555555542 22222 11
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEE
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEEL 181 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L 181 (259)
+++..+.|..|+.+.| .+..+ |... .++.+|+.|.++... +..++... ..+ .|.+|
T Consensus 161 ~ig~~~tl~~ld~s~n-ei~sl-psql-~~l~slr~l~vrRn~-l~~lp~El-------------------~~L-pLi~l 216 (722)
T KOG0532|consen 161 EIGLLPTLAHLDVSKN-EIQSL-PSQL-GYLTSLRDLNVRRNH-LEDLPEEL-------------------CSL-PLIRL 216 (722)
T ss_pred ccccchhHHHhhhhhh-hhhhc-hHHh-hhHHHHHHHHHhhhh-hhhCCHHH-------------------hCC-ceeee
Confidence 2556677777777766 34444 3322 456677777666632 22333222 212 36666
Q ss_pred eeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCC-hhHHhhcCCccEEEEecc
Q 048518 182 ELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFS-YSMANSLGQLRHLEIINC 240 (259)
Q Consensus 182 ~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~c 240 (259)
+++. .++..|+.. +..+..|+.|.+.+.| |++-|. ..+.+...-.++|++.-|
T Consensus 217 DfSc-Nkis~iPv~----fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 217 DFSC-NKISYLPVD----FRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eccc-Cceeecchh----hhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 6663 366666543 2345666666665555 444331 111222233355555555
No 62
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=90.27 E-value=0.15 Score=25.73 Aligned_cols=18 Identities=22% Similarity=0.601 Sum_probs=11.3
Q ss_pred CCCccEEEEecCCCCCcc
Q 048518 203 CQNLTKVTVTRCCPLKYM 220 (259)
Q Consensus 203 ~~~L~~L~l~~c~~l~~~ 220 (259)
|++|++|++++|+++++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 356666666666666654
No 63
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=89.88 E-value=0.27 Score=42.93 Aligned_cols=171 Identities=15% Similarity=0.132 Sum_probs=96.3
Q ss_pred hccceeeeccccccceeccccCCCCCC-CCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 23 KRTEDLRLYSLTGVQNVVHELDDGEGF-PRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 23 ~~L~~L~l~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
+.+..|.+.+. .+.++... ...+ ++|+.|++.+.. +..+ + .....+++|+.|++++++- .++..
T Consensus 116 ~~l~~L~l~~n-~i~~i~~~---~~~~~~nL~~L~l~~N~-i~~l-~----~~~~~l~~L~~L~l~~N~l-~~l~~---- 180 (394)
T COG4886 116 TNLTSLDLDNN-NITDIPPL---IGLLKSNLKELDLSDNK-IESL-P----SPLRNLPNLKNLDLSFNDL-SDLPK---- 180 (394)
T ss_pred cceeEEecCCc-ccccCccc---cccchhhcccccccccc-hhhh-h----hhhhccccccccccCCchh-hhhhh----
Confidence 45677776555 33444322 2344 389999988774 3332 1 1345678999999887642 22210
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecc--cCCCCCcccCCcccccc-CCCccccCCc
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIG--PDMEKPTTTQGFTEINA-EDDQVTFPRL 178 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~~l~~~~~~~~~-~~~~~~l~~L 178 (259)
.....++|+.|++++. .+..+ |... ....+|+++.+.+....+.+.. ....+..+......+.. +.....++.+
T Consensus 181 ~~~~~~~L~~L~ls~N-~i~~l-~~~~-~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l 257 (394)
T COG4886 181 LLSNLSNLNNLDLSGN-KISDL-PPEI-ELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNL 257 (394)
T ss_pred hhhhhhhhhheeccCC-ccccC-chhh-hhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcccccc
Confidence 0226788899999886 56655 4322 2345588888877643222211 01111111111111222 3345667889
Q ss_pred CEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCC
Q 048518 179 EELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPL 217 (259)
Q Consensus 179 ~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l 217 (259)
+.|+++++ .+++++. .....+++.+++++....
T Consensus 258 ~~L~~s~n-~i~~i~~-----~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 258 ETLDLSNN-QISSISS-----LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ceeccccc-ccccccc-----ccccCccCEEeccCcccc
Confidence 99999987 6777655 235688999999875543
No 64
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=88.14 E-value=0.13 Score=46.46 Aligned_cols=127 Identities=18% Similarity=0.157 Sum_probs=77.4
Q ss_pred cccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCccc----CCccccccCCCccccCCc
Q 048518 103 DQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTT----QGFTEINAEDDQVTFPRL 178 (259)
Q Consensus 103 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~----~~~~~~~~~~~~~~l~~L 178 (259)
+..+..|+.++++.. .+..+ |..+. .--|+.|-+++ +++..++...+..+.+. +.+...+.+..+..+.+|
T Consensus 117 i~~L~~lt~l~ls~N-qlS~l-p~~lC--~lpLkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~sl 191 (722)
T KOG0532|consen 117 ICNLEALTFLDLSSN-QLSHL-PDGLC--DLPLKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSL 191 (722)
T ss_pred hhhhhHHHHhhhccc-hhhcC-Chhhh--cCcceeEEEec-CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHH
Confidence 455666677777654 33333 33221 23355554443 55666665555443332 233334455566777888
Q ss_pred CEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccccc
Q 048518 179 EELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWSM 243 (259)
Q Consensus 179 ~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 243 (259)
+.|.+... .+..++... ..-.|.+||+ .|.++..+|. -...+..|++|.+.++|.-
T Consensus 192 r~l~vrRn-~l~~lp~El-----~~LpLi~lDf-ScNkis~iPv--~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 192 RDLNVRRN-HLEDLPEEL-----CSLPLIRLDF-SCNKISYLPV--DFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred HHHHHhhh-hhhhCCHHH-----hCCceeeeec-ccCceeecch--hhhhhhhheeeeeccCCCC
Confidence 88888776 566655432 1346788888 4677888887 5788899999999887654
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.73 E-value=0.037 Score=45.49 Aligned_cols=13 Identities=23% Similarity=0.248 Sum_probs=6.8
Q ss_pred CCCCCCccEEEEe
Q 048518 46 GEGFPRLQHLHVT 58 (259)
Q Consensus 46 ~~~l~~L~~L~l~ 58 (259)
+..+.+|++|++-
T Consensus 59 l~rCtrLkElYLR 71 (388)
T KOG2123|consen 59 LQRCTRLKELYLR 71 (388)
T ss_pred HHHHHHHHHHHHH
Confidence 3345555555554
No 66
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.33 E-value=0.27 Score=41.02 Aligned_cols=42 Identities=14% Similarity=0.059 Sum_probs=22.7
Q ss_pred CCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccccccc
Q 048518 203 CQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWSMEG 245 (259)
Q Consensus 203 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 245 (259)
+|++..|.+.. .++.++........++.|..|.+.+.|....
T Consensus 223 ~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 223 FPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred CCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCccccc
Confidence 44444444432 3344444434445567777777777665543
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=85.73 E-value=0.51 Score=38.39 Aligned_cols=87 Identities=20% Similarity=0.272 Sum_probs=40.0
Q ss_pred CCCCccEEEEecCcCcceecccccccccCCCCcccEeeccccc--cccccccccccCcccCCCccEEEEecCCCce--Ee
Q 048518 48 GFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLT--NLETICYSQLREDQSFSNLRIIYVYSCPKLK--YL 123 (259)
Q Consensus 48 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~--~~ 123 (259)
.+|+|+.|.++....-.. .........+|+|+.|.+++-. .++++ +....+++|..|++..|+... .-
T Consensus 63 ~Lp~LkkL~lsdn~~~~~---~~l~vl~e~~P~l~~l~ls~Nki~~lstl-----~pl~~l~nL~~Ldl~n~~~~~l~dy 134 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVS---GGLEVLAEKAPNLKVLNLSGNKIKDLSTL-----RPLKELENLKSLDLFNCSVTNLDDY 134 (260)
T ss_pred CcchhhhhcccCCccccc---ccceehhhhCCceeEEeecCCcccccccc-----chhhhhcchhhhhcccCCccccccH
Confidence 456677777765421110 0111122334777777666532 12222 224556666777776664322 11
Q ss_pred cchhhhhhcCCCcEEEEEec
Q 048518 124 FSFSMAKNLLGLQKVEVVNC 143 (259)
Q Consensus 124 ~~~~~~~~l~~L~~L~l~~c 143 (259)
-..++.-+++|+.|+-.+.
T Consensus 135 -re~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 135 -REKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred -HHHHHHHhhhhcccccccc
Confidence 2223344566666554443
No 68
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=82.51 E-value=0.083 Score=49.06 Aligned_cols=105 Identities=20% Similarity=0.139 Sum_probs=53.9
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
++.++.|+++.+. ++++. . +..++.|+.|+|+.+. +..+ +.. ....+ +|+.|.+++. .++.+ -
T Consensus 186 l~ale~LnLshNk-~~~v~---~-Lr~l~~LkhLDlsyN~-L~~v-p~l---~~~gc-~L~~L~lrnN-~l~tL-----~ 248 (1096)
T KOG1859|consen 186 LPALESLNLSHNK-FTKVD---N-LRRLPKLKHLDLSYNC-LRHV-PQL---SMVGC-KLQLLNLRNN-ALTTL-----R 248 (1096)
T ss_pred HHHhhhhccchhh-hhhhH---H-HHhcccccccccccch-hccc-ccc---chhhh-hheeeeeccc-HHHhh-----h
Confidence 7888888887773 44442 1 4578888888888442 3322 100 11122 3666766652 22221 1
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEecc
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCN 144 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 144 (259)
++..+.+|+.|+++..- +.+..-......+..|..|++.+++
T Consensus 249 gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 249 GIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence 13566777777776541 2111111122345556666666544
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=81.61 E-value=0.61 Score=22.35 Aligned_cols=16 Identities=19% Similarity=0.133 Sum_probs=8.4
Q ss_pred ccEEEEecCCCCCccCC
Q 048518 206 LTKVTVTRCCPLKYMFS 222 (259)
Q Consensus 206 L~~L~l~~c~~l~~~~~ 222 (259)
|+.|++++| .++.+|.
T Consensus 2 L~~Ldls~n-~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPS 17 (22)
T ss_dssp ESEEEETSS-EESEEGT
T ss_pred ccEEECCCC-cCEeCCh
Confidence 555566555 4454443
No 70
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=71.16 E-value=1.3 Score=39.19 Aligned_cols=36 Identities=11% Similarity=0.197 Sum_probs=16.0
Q ss_pred cCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEe
Q 048518 105 SFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVN 142 (259)
Q Consensus 105 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 142 (259)
.+++|+.+++.++. ++.+-+.. ...+.+++.+.+.+
T Consensus 160 ~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 160 SLKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGG 195 (414)
T ss_pred cchhhhcccCCcch-hhhhhhhh-hhhccchHHHhccC
Confidence 35556666665542 22221100 23455555555544
No 71
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=70.20 E-value=2 Score=37.88 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=16.1
Q ss_pred cCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecC
Q 048518 175 FPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRC 214 (259)
Q Consensus 175 l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c 214 (259)
++.|+.+++.++ .+..+... . ...+.+++.+.+.+.
T Consensus 161 l~~L~~l~l~~n-~i~~ie~~--~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 161 LKSLKLLDLSYN-RIVDIEND--E-LSELISLEELDLGGN 196 (414)
T ss_pred chhhhcccCCcc-hhhhhhhh--h-hhhccchHHHhccCC
Confidence 555556655555 23332220 0 123455555555543
No 72
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=64.29 E-value=1.4 Score=32.66 Aligned_cols=54 Identities=22% Similarity=0.313 Sum_probs=27.9
Q ss_pred eeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeeccccc
Q 048518 28 LRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLT 90 (259)
Q Consensus 28 L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 90 (259)
..++++ .+++++..+ ...+|.+..|++.+. .+..+ +. ....+|.|++|+++.-+
T Consensus 58 i~ls~N-~fk~fp~kf--t~kf~t~t~lNl~~n-eisdv-Pe----E~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 58 ISLSDN-GFKKFPKKF--TIKFPTATTLNLANN-EISDV-PE----ELAAMPALRSLNLRFNP 111 (177)
T ss_pred Eecccc-hhhhCCHHH--hhccchhhhhhcchh-hhhhc-hH----HHhhhHHhhhcccccCc
Confidence 444444 445554332 235666777766655 33333 22 23456777777776543
No 73
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=56.07 E-value=5 Score=36.40 Aligned_cols=80 Identities=26% Similarity=0.202 Sum_probs=45.2
Q ss_pred CceEeeeeccchHHH---------HHhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceeccccccc--c
Q 048518 6 PEKVSLLLGNDGTKM---------LLKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRV--R 74 (259)
Q Consensus 6 ~~~~~l~ls~~~~~~---------~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~--~ 74 (259)
+..+++.+++|.+.. ..++|+.|.++...+.-....++. .-+..-|++|-+.+.|..+.......+. .
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~-K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i 296 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELD-KLKGLPLEELVLEGNPLCTTFSDRSEYVSAI 296 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhh-hhcCCCHHHeeecCCccccchhhhHHHHHHH
Confidence 345677777776533 378888888888744333222322 2234568888888887555431211111 2
Q ss_pred cCCCCcccEeec
Q 048518 75 CEVFPLLESLDL 86 (259)
Q Consensus 75 ~~~~~~L~~L~l 86 (259)
...||.|..|+=
T Consensus 297 ~~~FPKL~~LDG 308 (585)
T KOG3763|consen 297 RELFPKLLRLDG 308 (585)
T ss_pred HHhcchheeecC
Confidence 345777766643
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=55.27 E-value=8.7 Score=18.84 Aligned_cols=17 Identities=35% Similarity=0.514 Sum_probs=8.7
Q ss_pred CCcCEEeeCCCccccccC
Q 048518 176 PRLEELELVSLTNIKKLW 193 (259)
Q Consensus 176 ~~L~~L~l~~c~~l~~l~ 193 (259)
++|+.|++.++ .++.++
T Consensus 2 ~~L~~L~L~~N-~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNN-QLSSLP 18 (26)
T ss_pred CCCCEEECCCC-cCCcCC
Confidence 34555555554 444443
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=55.27 E-value=8.7 Score=18.84 Aligned_cols=17 Identities=35% Similarity=0.514 Sum_probs=8.7
Q ss_pred CCcCEEeeCCCccccccC
Q 048518 176 PRLEELELVSLTNIKKLW 193 (259)
Q Consensus 176 ~~L~~L~l~~c~~l~~l~ 193 (259)
++|+.|++.++ .++.++
T Consensus 2 ~~L~~L~L~~N-~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNN-QLSSLP 18 (26)
T ss_pred CCCCEEECCCC-cCCcCC
Confidence 34555555554 444443
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=54.56 E-value=8.1 Score=18.58 Aligned_cols=12 Identities=25% Similarity=0.285 Sum_probs=7.4
Q ss_pred CCccEEEEeccc
Q 048518 230 GQLRHLEIINCW 241 (259)
Q Consensus 230 ~~L~~L~l~~c~ 241 (259)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 567788887776
Done!