Query 048518
Match_columns 259
No_of_seqs 126 out of 1419
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 17:48:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048518.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048518hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.6 1.1E-14 3.8E-19 122.8 13.7 185 22-245 103-292 (328)
2 4fcg_A Uncharacterized protein 99.6 5E-14 1.7E-18 118.8 14.6 181 22-240 126-311 (328)
3 2xwt_C Thyrotropin receptor; s 99.4 2.7E-12 9.3E-17 103.1 14.8 115 22-150 30-147 (239)
4 3zyj_A Leucine-rich repeat-con 99.4 3.3E-12 1.1E-16 111.7 15.9 199 23-241 64-290 (440)
5 1ozn_A Reticulon 4 receptor; N 99.4 3E-12 1E-16 105.5 14.8 202 22-243 31-238 (285)
6 3zyi_A Leucine-rich repeat-con 99.4 3.6E-12 1.2E-16 111.9 15.8 199 23-241 75-301 (452)
7 3zyi_A Leucine-rich repeat-con 99.4 1.9E-12 6.6E-17 113.6 13.8 178 22-216 98-302 (452)
8 3zyj_A Leucine-rich repeat-con 99.4 2E-12 6.7E-17 113.2 13.4 175 22-216 87-291 (440)
9 3rfs_A Internalin B, repeat mo 99.4 2.2E-12 7.4E-17 105.8 12.7 177 22-241 40-216 (272)
10 2o6q_A Variable lymphocyte rec 99.4 5.2E-12 1.8E-16 103.3 13.8 193 10-241 20-216 (270)
11 2ast_B S-phase kinase-associat 99.4 9.7E-14 3.3E-18 116.9 3.3 64 173-240 219-282 (336)
12 2id5_A Lingo-1, leucine rich r 99.4 1.1E-11 3.7E-16 109.4 14.3 62 174-241 270-331 (477)
13 4fmz_A Internalin; leucine ric 99.4 6.4E-12 2.2E-16 106.2 12.3 194 22-241 109-322 (347)
14 1h6u_A Internalin H; cell adhe 99.3 1.3E-11 4.4E-16 103.0 13.1 187 22-242 40-229 (308)
15 2id5_A Lingo-1, leucine rich r 99.3 1.6E-11 5.4E-16 108.4 13.9 199 22-241 55-259 (477)
16 2ast_B S-phase kinase-associat 99.3 4E-13 1.4E-17 113.2 3.3 208 22-249 92-311 (336)
17 1xku_A Decorin; proteoglycan, 99.3 1.4E-11 4.9E-16 103.5 12.9 64 171-241 211-274 (330)
18 2z80_A TOLL-like receptor 2, v 99.3 7.2E-12 2.5E-16 106.4 10.9 41 201-243 274-314 (353)
19 3o6n_A APL1; leucine-rich repe 99.3 5.1E-11 1.7E-15 102.5 15.5 108 22-143 68-175 (390)
20 2z66_A Variable lymphocyte rec 99.3 5.5E-12 1.9E-16 104.9 9.0 131 103-241 122-259 (306)
21 2z66_A Variable lymphocyte rec 99.3 9.7E-12 3.3E-16 103.4 10.4 216 10-243 11-236 (306)
22 1p9a_G Platelet glycoprotein I 99.3 2.4E-11 8.1E-16 100.6 12.3 188 11-241 15-206 (290)
23 2z80_A TOLL-like receptor 2, v 99.3 2E-11 7E-16 103.6 12.2 194 11-241 36-233 (353)
24 3vq2_A TLR4, TOLL-like recepto 99.3 1.1E-11 3.6E-16 112.6 10.8 63 172-241 493-556 (606)
25 4fmz_A Internalin; leucine ric 99.3 4.5E-11 1.5E-15 101.0 13.6 59 172-240 195-253 (347)
26 1ogq_A PGIP-2, polygalacturona 99.3 2.4E-11 8.4E-16 101.5 11.7 201 22-243 75-281 (313)
27 3v47_A TOLL-like receptor 5B a 99.3 2.9E-11 9.9E-16 105.9 12.5 112 22-143 53-164 (455)
28 3t6q_A CD180 antigen; protein- 99.3 3.7E-11 1.3E-15 109.0 13.3 37 22-61 300-336 (606)
29 3o53_A Protein LRIM1, AGAP0063 99.3 2.2E-11 7.4E-16 102.0 10.8 61 174-242 189-249 (317)
30 3t6q_A CD180 antigen; protein- 99.3 4.7E-11 1.6E-15 108.4 13.5 205 22-242 277-512 (606)
31 2z63_A TOLL-like receptor 4, v 99.3 1.6E-11 5.6E-16 110.4 9.8 133 104-243 393-531 (570)
32 3rgz_A Protein brassinosteroid 99.3 5.8E-11 2E-15 110.9 13.8 66 77-149 488-554 (768)
33 2ft3_A Biglycan; proteoglycan, 99.2 5.4E-11 1.9E-15 100.1 11.6 207 11-241 38-275 (332)
34 4ezg_A Putative uncharacterize 99.2 1.2E-10 4E-15 90.7 12.4 151 48-241 42-192 (197)
35 3vq2_A TLR4, TOLL-like recepto 99.2 4.4E-11 1.5E-15 108.5 11.4 200 22-241 327-532 (606)
36 3o6n_A APL1; leucine-rich repe 99.2 7.5E-11 2.6E-15 101.4 12.0 62 172-241 268-329 (390)
37 3oja_A Leucine-rich immune mol 99.2 5.1E-11 1.7E-15 105.6 11.2 64 172-243 187-250 (487)
38 1ogq_A PGIP-2, polygalacturona 99.2 2E-11 6.7E-16 102.1 8.0 201 22-244 100-305 (313)
39 4ay9_X Follicle-stimulating ho 99.2 2.6E-10 9E-15 96.7 15.0 196 22-239 29-255 (350)
40 2z62_A TOLL-like receptor 4, v 99.2 9E-11 3.1E-15 96.1 11.6 53 180-239 181-233 (276)
41 1h6t_A Internalin B; cell adhe 99.2 1.7E-10 5.8E-15 95.4 12.8 168 22-242 45-212 (291)
42 3oja_B Anopheles plasmodium-re 99.2 1E-10 3.5E-15 106.2 12.3 196 22-242 98-336 (597)
43 1ziw_A TOLL-like receptor 3; i 99.2 1.2E-10 4.1E-15 107.1 12.8 131 103-241 476-620 (680)
44 1xku_A Decorin; proteoglycan, 99.2 5E-10 1.7E-14 94.0 15.6 196 22-241 51-251 (330)
45 1ozn_A Reticulon 4 receptor; N 99.2 2.2E-10 7.7E-15 94.2 13.1 178 48-241 30-212 (285)
46 4ay9_X Follicle-stimulating ho 99.2 3E-10 1E-14 96.3 13.9 188 10-213 34-255 (350)
47 2xwt_C Thyrotropin receptor; s 99.2 1.8E-10 6.1E-15 92.3 11.8 181 22-243 54-239 (239)
48 4ezg_A Putative uncharacterize 99.2 7.6E-11 2.6E-15 91.8 9.1 151 21-215 42-192 (197)
49 3v47_A TOLL-like receptor 5B a 99.2 2.2E-10 7.5E-15 100.3 13.1 65 172-242 343-407 (455)
50 1o6v_A Internalin A; bacterial 99.2 1.8E-10 6.3E-15 101.4 12.6 60 172-241 327-386 (466)
51 3bz5_A Internalin-J, INLJ; leu 99.2 7.4E-11 2.5E-15 103.8 10.0 33 22-60 84-116 (457)
52 3rgz_A Protein brassinosteroid 99.2 1.9E-10 6.3E-15 107.5 13.1 204 22-243 342-551 (768)
53 3rfs_A Internalin B, repeat mo 99.2 1.3E-10 4.5E-15 95.1 10.7 157 22-217 62-218 (272)
54 3bz5_A Internalin-J, INLJ; leu 99.2 2E-10 6.8E-15 101.0 12.4 99 22-146 63-161 (457)
55 3m19_A Variable lymphocyte rec 99.2 4.2E-10 1.4E-14 90.9 13.3 38 174-215 153-190 (251)
56 3o53_A Protein LRIM1, AGAP0063 99.2 1.7E-11 5.9E-16 102.6 4.9 204 22-245 57-277 (317)
57 2o6q_A Variable lymphocyte rec 99.2 1.9E-10 6.6E-15 93.9 11.0 158 22-216 60-217 (270)
58 2ft3_A Biglycan; proteoglycan, 99.2 2.6E-10 8.8E-15 95.9 12.0 191 24-241 34-252 (332)
59 1m9s_A Internalin B; cell inva 99.2 1.6E-10 5.5E-15 104.9 11.4 170 21-243 41-210 (605)
60 2z81_A CD282 antigen, TOLL-lik 99.1 2.5E-10 8.6E-15 102.3 12.0 116 22-150 25-140 (549)
61 3j0a_A TOLL-like receptor 5; m 99.1 9.7E-10 3.3E-14 103.7 16.2 113 22-144 47-159 (844)
62 4eco_A Uncharacterized protein 99.1 1.1E-10 3.8E-15 106.8 9.3 206 22-242 205-469 (636)
63 1o6v_A Internalin A; bacterial 99.1 2.9E-10 9.9E-15 100.1 11.6 187 22-242 176-365 (466)
64 1wwl_A Monocyte differentiatio 99.1 8.1E-11 2.8E-15 98.3 7.3 201 22-241 94-307 (312)
65 4glp_A Monocyte differentiatio 99.1 1E-10 3.5E-15 97.5 7.4 202 22-241 90-305 (310)
66 3ogk_B Coronatine-insensitive 99.1 1.3E-11 4.5E-16 111.5 1.9 206 22-241 292-524 (592)
67 1h6u_A Internalin H; cell adhe 99.1 5.9E-10 2E-14 92.9 11.6 164 22-215 62-228 (308)
68 2p1m_B Transport inhibitor res 99.1 1.9E-11 6.4E-16 110.5 2.3 208 22-240 104-348 (594)
69 2p1m_B Transport inhibitor res 99.1 3.2E-11 1.1E-15 109.0 3.7 211 22-244 129-385 (594)
70 2z62_A TOLL-like receptor 4, v 99.1 6.6E-10 2.2E-14 90.9 10.9 181 22-241 27-211 (276)
71 2z7x_B TOLL-like receptor 1, v 99.1 8.2E-10 2.8E-14 98.4 12.1 158 48-243 322-481 (520)
72 3m19_A Variable lymphocyte rec 99.1 1E-09 3.5E-14 88.6 11.6 177 24-242 15-191 (251)
73 4ecn_A Leucine-rich repeat pro 99.1 1.6E-09 5.5E-14 102.0 14.5 126 107-242 673-818 (876)
74 4eco_A Uncharacterized protein 99.1 9.4E-10 3.2E-14 100.6 12.5 38 105-144 431-468 (636)
75 1p9a_G Platelet glycoprotein I 99.1 1.7E-09 5.7E-14 89.4 12.7 175 22-241 9-183 (290)
76 2z63_A TOLL-like receptor 4, v 99.1 1.1E-09 3.9E-14 98.3 12.4 64 171-241 440-505 (570)
77 3oja_B Anopheles plasmodium-re 99.1 1.6E-09 5.4E-14 98.4 13.0 197 22-242 74-313 (597)
78 2z81_A CD282 antigen, TOLL-lik 99.0 7.8E-10 2.7E-14 99.0 10.4 207 22-242 49-263 (549)
79 4ecn_A Leucine-rich repeat pro 99.0 1.5E-09 5E-14 102.3 12.3 205 22-241 447-708 (876)
80 3oja_A Leucine-rich immune mol 99.0 2.2E-10 7.6E-15 101.5 5.1 210 9-238 37-270 (487)
81 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 2.2E-09 7.6E-14 96.6 11.6 154 76-243 350-510 (562)
82 1ziw_A TOLL-like receptor 3; i 99.0 5.8E-09 2E-13 95.8 14.0 151 77-240 428-594 (680)
83 3j0a_A TOLL-like receptor 5; m 99.0 2.6E-09 9E-14 100.7 11.6 162 21-216 22-186 (844)
84 1wwl_A Monocyte differentiatio 99.0 8.4E-10 2.9E-14 92.1 7.3 200 22-241 62-285 (312)
85 3g06_A SSPH2 (leucine-rich rep 99.0 5.2E-09 1.8E-13 95.2 12.9 59 174-243 239-297 (622)
86 4glp_A Monocyte differentiatio 99.0 2.4E-10 8.3E-15 95.2 3.8 205 24-242 65-284 (310)
87 2z7x_B TOLL-like receptor 1, v 99.0 9.2E-09 3.1E-13 91.5 13.9 185 23-241 247-455 (520)
88 1h6t_A Internalin B; cell adhe 99.0 3.3E-09 1.1E-13 87.7 10.1 145 22-215 67-211 (291)
89 3g06_A SSPH2 (leucine-rich rep 98.9 1.1E-08 3.6E-13 93.2 13.3 53 175-241 220-272 (622)
90 3a79_B TLR6, VLRB.59, TOLL-lik 98.9 1.5E-08 5.3E-13 91.1 13.4 36 22-60 51-86 (562)
91 1jl5_A Outer protein YOPM; leu 98.9 2.6E-08 9E-13 87.4 13.6 75 107-186 131-205 (454)
92 1m9s_A Internalin B; cell inva 98.9 3.7E-09 1.3E-13 96.0 8.2 145 22-215 64-208 (605)
93 3ogk_B Coronatine-insensitive 98.9 1.4E-09 4.7E-14 98.3 4.8 66 174-242 376-448 (592)
94 3e6j_A Variable lymphocyte rec 98.8 2.3E-08 7.9E-13 79.6 10.9 134 49-217 39-172 (229)
95 2o6s_A Variable lymphocyte rec 98.8 3.3E-08 1.1E-12 77.3 11.4 136 48-217 26-161 (208)
96 1jl5_A Outer protein YOPM; leu 98.8 4.1E-08 1.4E-12 86.2 13.0 79 107-191 173-251 (454)
97 2ell_A Acidic leucine-rich nuc 98.8 1.5E-08 5.3E-13 76.4 8.6 38 104-143 68-105 (168)
98 2ell_A Acidic leucine-rich nuc 98.8 1.2E-08 4E-13 77.1 7.8 135 77-242 22-159 (168)
99 2xot_A Amphoterin-induced prot 98.8 5.3E-08 1.8E-12 82.8 12.2 159 50-241 39-200 (361)
100 2ca6_A RAN GTPase-activating p 98.8 1.8E-09 6.2E-14 92.6 3.1 68 172-242 240-315 (386)
101 2v70_A SLIT-2, SLIT homolog 2 98.8 6.3E-08 2.2E-12 76.6 11.8 134 50-216 32-165 (220)
102 2v9t_B SLIT homolog 2 protein 98.8 6.7E-08 2.3E-12 76.4 11.7 133 50-216 32-164 (220)
103 1xeu_A Internalin C; cellular 98.8 5E-08 1.7E-12 79.3 11.0 144 22-215 40-183 (263)
104 4g8a_A TOLL-like receptor 4; l 98.8 1.9E-08 6.7E-13 91.1 9.4 62 172-239 514-576 (635)
105 1xeu_A Internalin C; cellular 98.8 3.5E-08 1.2E-12 80.3 9.9 167 22-242 18-184 (263)
106 4g8a_A TOLL-like receptor 4; l 98.8 4.2E-08 1.4E-12 88.9 11.3 113 104-242 442-554 (635)
107 2o6s_A Variable lymphocyte rec 98.7 8.6E-08 3E-12 74.9 11.0 157 22-222 27-183 (208)
108 2ca6_A RAN GTPase-activating p 98.7 5.5E-10 1.9E-14 95.8 -2.3 65 171-241 211-285 (386)
109 3cvr_A Invasion plasmid antige 98.7 1.6E-07 5.6E-12 84.5 13.6 179 23-244 59-244 (571)
110 1z7x_W Ribonuclease inhibitor; 98.7 1E-09 3.5E-14 96.1 -1.2 11 23-33 56-66 (461)
111 3goz_A Leucine-rich repeat-con 98.7 3.1E-09 1.1E-13 90.4 1.4 64 176-241 196-264 (362)
112 2v9t_B SLIT homolog 2 protein 98.7 1.2E-07 4.1E-12 75.0 10.4 38 104-143 101-138 (220)
113 2je0_A Acidic leucine-rich nuc 98.7 1.4E-08 4.9E-13 75.0 4.3 83 48-143 15-98 (149)
114 2je0_A Acidic leucine-rich nuc 98.7 2.7E-08 9.1E-13 73.5 5.6 130 78-238 16-148 (149)
115 2v70_A SLIT-2, SLIT homolog 2 98.7 2.9E-07 9.9E-12 72.7 11.9 60 175-240 104-163 (220)
116 2xot_A Amphoterin-induced prot 98.6 2.6E-07 8.9E-12 78.5 11.8 135 77-241 37-174 (361)
117 3e6j_A Variable lymphocyte rec 98.6 2.5E-07 8.5E-12 73.5 10.7 131 79-241 40-170 (229)
118 1z7x_W Ribonuclease inhibitor; 98.6 2.1E-09 7E-14 94.2 -2.1 210 22-241 169-409 (461)
119 3e4g_A ATP synthase subunit S, 98.6 2.9E-08 9.8E-13 75.4 4.3 93 50-148 61-154 (176)
120 3sb4_A Hypothetical leucine ri 98.6 2E-07 6.9E-12 78.1 9.5 57 173-237 247-304 (329)
121 3e4g_A ATP synthase subunit S, 98.6 3.5E-08 1.2E-12 74.9 3.7 63 80-146 62-127 (176)
122 1a9n_A U2A', U2A'; complex (nu 98.6 1.2E-07 4E-12 72.2 6.6 82 48-143 17-98 (176)
123 3goz_A Leucine-rich repeat-con 98.5 8.7E-09 3E-13 87.7 0.1 65 176-241 225-295 (362)
124 1a9n_A U2A', U2A'; complex (nu 98.5 1.5E-07 5.2E-12 71.5 6.7 135 76-243 16-153 (176)
125 3sb4_A Hypothetical leucine ri 98.5 2.5E-06 8.7E-11 71.3 13.5 102 106-236 225-327 (329)
126 2o6r_A Variable lymphocyte rec 98.5 6.3E-07 2.2E-11 68.1 8.6 113 77-218 26-138 (177)
127 2o6r_A Variable lymphocyte rec 98.4 2.1E-06 7E-11 65.2 9.6 38 104-143 73-110 (177)
128 1w8a_A SLIT protein; signaling 98.3 1.8E-06 6.3E-11 66.5 8.2 129 53-217 11-139 (192)
129 1w8a_A SLIT protein; signaling 98.3 3.3E-06 1.1E-10 65.1 9.6 126 26-186 11-136 (192)
130 3cvr_A Invasion plasmid antige 98.3 3.2E-06 1.1E-10 76.1 10.8 173 10-220 63-246 (571)
131 2wfh_A SLIT homolog 2 protein 98.3 3.5E-06 1.2E-10 65.0 9.4 88 103-215 50-137 (193)
132 2wfh_A SLIT homolog 2 protein 98.2 5.6E-06 1.9E-10 63.9 9.3 109 106-242 30-138 (193)
133 2ra8_A Uncharacterized protein 98.2 1.4E-06 4.9E-11 74.0 6.0 175 46-241 135-318 (362)
134 2ra8_A Uncharacterized protein 98.1 7.8E-07 2.7E-11 75.6 2.7 188 22-241 138-341 (362)
135 1dce_A Protein (RAB geranylger 98.1 9.3E-06 3.2E-10 73.1 9.0 103 108-241 442-544 (567)
136 4b8c_D Glucose-repressible alc 98.1 3.2E-06 1.1E-10 78.4 5.4 110 75-217 220-329 (727)
137 1ds9_A Outer arm dynein; leuci 98.0 4.2E-07 1.4E-11 70.4 -1.5 149 51-237 24-181 (198)
138 1ds9_A Outer arm dynein; leuci 98.0 4.6E-07 1.6E-11 70.2 -1.9 130 46-210 44-180 (198)
139 1dce_A Protein (RAB geranylger 97.9 2E-05 6.7E-10 71.0 8.1 190 10-237 353-567 (567)
140 4fdw_A Leucine rich hypothetic 97.9 0.00039 1.3E-08 59.8 15.1 60 172-240 296-355 (401)
141 3un9_A NLR family member X1; l 97.9 6.1E-07 2.1E-11 76.6 -2.6 13 203-215 238-250 (372)
142 4b8c_D Glucose-repressible alc 97.8 1.7E-05 5.8E-10 73.6 6.0 109 46-190 220-329 (727)
143 4fdw_A Leucine rich hypothetic 97.8 0.00041 1.4E-08 59.7 14.2 62 172-239 267-332 (401)
144 2r9u_A Variable lymphocyte rec 97.8 6.3E-05 2.1E-09 56.9 7.2 85 107-216 33-117 (174)
145 3g39_A Variable lymphocyte rec 97.7 0.00012 4.2E-09 55.0 7.2 86 106-216 29-114 (170)
146 3g39_A Variable lymphocyte rec 97.6 0.00013 4.5E-09 54.8 6.6 103 109-241 11-113 (170)
147 3un9_A NLR family member X1; l 97.6 1E-06 3.4E-11 75.3 -5.9 172 48-241 70-250 (372)
148 2r9u_A Variable lymphocyte rec 97.6 0.00016 5.5E-09 54.6 6.9 102 110-241 15-116 (174)
149 2ifg_A High affinity nerve gro 97.6 0.00012 4.2E-09 61.3 6.4 89 103-216 27-115 (347)
150 2ifg_A High affinity nerve gro 97.5 0.00032 1.1E-08 58.7 7.9 86 76-186 28-113 (347)
151 4fs7_A Uncharacterized protein 96.0 0.065 2.2E-06 45.5 11.3 60 173-240 317-376 (394)
152 1io0_A Tropomodulin; LRR prote 95.9 0.00082 2.8E-08 51.2 -1.2 13 105-117 63-75 (185)
153 4fs7_A Uncharacterized protein 95.2 0.22 7.7E-06 42.1 11.5 83 103-213 293-375 (394)
154 1io0_A Tropomodulin; LRR prote 95.1 0.0025 8.5E-08 48.4 -1.0 122 103-241 32-162 (185)
155 4gt6_A Cell surface protein; l 94.5 0.24 8.2E-06 41.9 9.9 61 172-240 307-367 (394)
156 4h09_A Hypothetical leucine ri 93.9 0.51 1.7E-05 39.5 10.6 59 173-238 283-341 (379)
157 3rw6_A Nuclear RNA export fact 93.3 0.078 2.7E-06 42.7 4.2 87 130-237 167-258 (267)
158 4gt6_A Cell surface protein; l 92.4 0.66 2.2E-05 39.2 9.0 38 172-214 330-367 (394)
159 3rw6_A Nuclear RNA export fact 92.2 0.099 3.4E-06 42.1 3.4 67 173-243 167-233 (267)
160 4h09_A Hypothetical leucine ri 90.6 1.3 4.6E-05 36.9 9.1 90 104-222 260-349 (379)
161 3rfe_A Platelet glycoprotein I 73.3 3.4 0.00012 28.9 3.7 37 176-216 31-67 (130)
162 3rfe_A Platelet glycoprotein I 72.1 2.4 8.3E-05 29.7 2.7 35 107-143 31-65 (130)
163 2lz0_A Uncharacterized protein 25.3 63 0.0021 21.1 3.1 37 172-213 16-52 (100)
164 1pgv_A TMD-1, tropomodulin TMD 22.6 33 0.0011 25.8 1.5 65 79-144 41-109 (197)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.60 E-value=1.1e-14 Score=122.77 Aligned_cols=185 Identities=18% Similarity=0.234 Sum_probs=92.8
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeeccccccccccccc---
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYS--- 98 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--- 98 (259)
+++|++|++.++. +..++.. +..+++|+.|+++++. +..+ +. ....+++|+.|++++|..+..+...
T Consensus 103 l~~L~~L~L~~n~-l~~lp~~---~~~l~~L~~L~Ls~n~-l~~l-p~----~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 172 (328)
T 4fcg_A 103 LSHLQHMTIDAAG-LMELPDT---MQQFAGLETLTLARNP-LRAL-PA----SIASLNRLRELSIRACPELTELPEPLAS 172 (328)
T ss_dssp GTTCSEEEEESSC-CCCCCSC---GGGGTTCSEEEEESCC-CCCC-CG----GGGGCTTCCEEEEEEETTCCCCCSCSEE
T ss_pred CCCCCEEECCCCC-ccchhHH---HhccCCCCEEECCCCc-cccC-cH----HHhcCcCCCEEECCCCCCccccChhHhh
Confidence 5566666665553 3333222 3456666666666653 2233 21 2334566666666666544433110
Q ss_pred -ccc-CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccC
Q 048518 99 -QLR-EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFP 176 (259)
Q Consensus 99 -~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 176 (259)
..+ .+..+++|+.|+++++ .++.+ |.. +.++++|+.|++++|.-. .++. .+..++
T Consensus 173 ~~~~~~~~~l~~L~~L~L~~n-~l~~l-p~~-l~~l~~L~~L~L~~N~l~-~l~~-------------------~l~~l~ 229 (328)
T 4fcg_A 173 TDASGEHQGLVNLQSLRLEWT-GIRSL-PAS-IANLQNLKSLKIRNSPLS-ALGP-------------------AIHHLP 229 (328)
T ss_dssp EC-CCCEEESTTCCEEEEEEE-CCCCC-CGG-GGGCTTCCEEEEESSCCC-CCCG-------------------GGGGCT
T ss_pred ccchhhhccCCCCCEEECcCC-CcCcc-hHh-hcCCCCCCEEEccCCCCC-cCch-------------------hhccCC
Confidence 000 0123666777777665 34433 333 345667777777665322 2222 233455
Q ss_pred CcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccccccc
Q 048518 177 RLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWSMEG 245 (259)
Q Consensus 177 ~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 245 (259)
+|+.|++++|...+.++.. +..+++|+.|++++|..+..+|. ....+++|++|++++|+.++.
T Consensus 230 ~L~~L~Ls~n~~~~~~p~~----~~~l~~L~~L~L~~n~~~~~~p~--~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 230 KLEELDLRGCTALRNYPPI----FGGRAPLKRLILKDCSNLLTLPL--DIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp TCCEEECTTCTTCCBCCCC----TTCCCCCCEEECTTCTTCCBCCT--TGGGCTTCCEEECTTCTTCCC
T ss_pred CCCEEECcCCcchhhhHHH----hcCCCCCCEEECCCCCchhhcch--hhhcCCCCCEEeCCCCCchhh
Confidence 6666666665444333221 23455666666666655555554 244556666666666555443
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.57 E-value=5e-14 Score=118.76 Aligned_cols=181 Identities=18% Similarity=0.176 Sum_probs=136.8
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccc-----cccCCCCcccEeeccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRR-----VRCEVFPLLESLDLINLTNLETIC 96 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~l~~~~ 96 (259)
+++|++|++.++. +..++.. +..+++|+.|++++|.....+ +.... +....+++|+.|+++++ .+..+.
T Consensus 126 l~~L~~L~Ls~n~-l~~lp~~---l~~l~~L~~L~L~~n~~~~~~-p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp 199 (328)
T 4fcg_A 126 FAGLETLTLARNP-LRALPAS---IASLNRLRELSIRACPELTEL-PEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLP 199 (328)
T ss_dssp GTTCSEEEEESCC-CCCCCGG---GGGCTTCCEEEEEEETTCCCC-CSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCC
T ss_pred cCCCCEEECCCCc-cccCcHH---HhcCcCCCEEECCCCCCcccc-ChhHhhccchhhhccCCCCCEEECcCC-CcCcch
Confidence 7899999999884 4455433 568999999999999877665 22110 11234899999999986 333331
Q ss_pred cccccCcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccC
Q 048518 97 YSQLREDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFP 176 (259)
Q Consensus 97 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 176 (259)
. .+..+++|++|+++++ .++.+ +.. +..+++|+.|++++|.....++. .+..++
T Consensus 200 ~----~l~~l~~L~~L~L~~N-~l~~l-~~~-l~~l~~L~~L~Ls~n~~~~~~p~-------------------~~~~l~ 253 (328)
T 4fcg_A 200 A----SIANLQNLKSLKIRNS-PLSAL-GPA-IHHLPKLEELDLRGCTALRNYPP-------------------IFGGRA 253 (328)
T ss_dssp G----GGGGCTTCCEEEEESS-CCCCC-CGG-GGGCTTCCEEECTTCTTCCBCCC-------------------CTTCCC
T ss_pred H----hhcCCCCCCEEEccCC-CCCcC-chh-hccCCCCCEEECcCCcchhhhHH-------------------HhcCCC
Confidence 1 3678999999999998 46655 443 46899999999999887766542 244689
Q ss_pred CcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEecc
Q 048518 177 RLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINC 240 (259)
Q Consensus 177 ~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 240 (259)
+|+.|++++|..++.++.. +..+++|+.|++++|+.+..+|. .+.++++|+.+++...
T Consensus 254 ~L~~L~L~~n~~~~~~p~~----~~~l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 254 PLKRLILKDCSNLLTLPLD----IHRLTQLEKLDLRGCVNLSRLPS--LIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCEEECTTCTTCCBCCTT----GGGCTTCCEEECTTCTTCCCCCG--GGGGSCTTCEEECCGG
T ss_pred CCCEEECCCCCchhhcchh----hhcCCCCCEEeCCCCCchhhccH--HHhhccCceEEeCCHH
Confidence 9999999999777766443 45789999999999999999987 6788999999988743
No 3
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.44 E-value=2.7e-12 Score=103.05 Aligned_cols=115 Identities=11% Similarity=0.157 Sum_probs=72.7
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
.++++.|++.++ .++.++.. . +..+++|+.|+++++..++.+.+. ....+++|+.|++++|..+..+...
T Consensus 30 ~~~l~~L~l~~n-~l~~i~~~-~-~~~l~~L~~L~l~~n~~l~~i~~~----~f~~l~~L~~L~l~~~n~l~~i~~~--- 99 (239)
T 2xwt_C 30 PPSTQTLKLIET-HLRTIPSH-A-FSNLPNISRIYVSIDVTLQQLESH----SFYNLSKVTHIEIRNTRNLTYIDPD--- 99 (239)
T ss_dssp CTTCCEEEEESC-CCSEECTT-T-TTTCTTCCEEEEECCSSCCEECTT----TEESCTTCCEEEEEEETTCCEECTT---
T ss_pred CCcccEEEEeCC-cceEECHH-H-ccCCCCCcEEeCCCCCCcceeCHh----HcCCCcCCcEEECCCCCCeeEcCHH---
Confidence 346788888776 35555332 2 557888888888887545554111 2345678888888876666655221
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCc---EEEEEeccCcceec
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQ---KVEVVNCNKLKMMI 150 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~---~L~l~~c~~l~~~~ 150 (259)
.+..+++|++|+++++ .++.+ |. +..+++|+ .|++++++.+..++
T Consensus 100 ~f~~l~~L~~L~l~~n-~l~~l-p~--~~~l~~L~~L~~L~l~~N~~l~~i~ 147 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNT-GLKMF-PD--LTKVYSTDIFFILEITDNPYMTSIP 147 (239)
T ss_dssp SEECCTTCCEEEEEEE-CCCSC-CC--CTTCCBCCSEEEEEEESCTTCCEEC
T ss_pred HhCCCCCCCEEeCCCC-CCccc-cc--cccccccccccEEECCCCcchhhcC
Confidence 2446778888888877 35544 33 34566776 88888876666654
No 4
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.43 E-value=3.3e-12 Score=111.74 Aligned_cols=199 Identities=13% Similarity=0.120 Sum_probs=94.1
Q ss_pred hccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeeccccccccccccccccC
Q 048518 23 KRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLRE 102 (259)
Q Consensus 23 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 102 (259)
++++.|++.++ .++.+... . +.++++|+.|+++++. +..+... ....+++|+.|+++++ .+..+... .
T Consensus 64 ~~l~~L~L~~n-~i~~~~~~-~-~~~l~~L~~L~Ls~n~-i~~i~~~----~~~~l~~L~~L~L~~n-~l~~~~~~---~ 131 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKVN-S-FKHLRHLEILQLSRNH-IRTIEIG----AFNGLANLNTLELFDN-RLTTIPNG---A 131 (440)
T ss_dssp TTCSEEECCSC-CCCEECTT-T-TSSCSSCCEEECCSSC-CCEECGG----GGTTCSSCCEEECCSS-CCSSCCTT---T
T ss_pred CCCcEEEccCC-cCCeeCHH-H-hhCCCCCCEEECCCCc-CCccChh----hccCCccCCEEECCCC-cCCeeCHh---H
Confidence 45666666655 23333222 1 4466666666666663 3332111 2334566666666554 23222110 1
Q ss_pred cccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceeccc-CCCCCccc---CCccccccCCC-------
Q 048518 103 DQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGP-DMEKPTTT---QGFTEINAEDD------- 171 (259)
Q Consensus 103 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~l~---~~~~~~~~~~~------- 171 (259)
+..+++|++|+++++ .++.+ +...+.++++|+.|++.+|..+..++.. -.+++.+. -..+.++.++.
T Consensus 132 ~~~l~~L~~L~L~~N-~i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L 209 (440)
T 3zyj_A 132 FVYLSKLKELWLRNN-PIESI-PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKL 209 (440)
T ss_dssp SCSCSSCCEEECCSC-CCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSC
T ss_pred hhccccCceeeCCCC-ccccc-CHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCccc
Confidence 334555555555554 34444 2222344555555555555544443321 11111111 11112222222
Q ss_pred -----------------ccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccE
Q 048518 172 -----------------QVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRH 234 (259)
Q Consensus 172 -----------------~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~ 234 (259)
+..+++|+.|++.++ .++.+.... +..+++|+.|+++++. ++.++.. ....+++|++
T Consensus 210 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~---~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~ 283 (440)
T 3zyj_A 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNA---FDNLQSLVEINLAHNN-LTLLPHD-LFTPLHHLER 283 (440)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTS---STTCTTCCEEECTTSC-CCCCCTT-TTSSCTTCCE
T ss_pred CEEECCCCccCccChhhhccCccCCEEECCCC-ceeEEChhh---hcCCCCCCEEECCCCC-CCccChh-HhccccCCCE
Confidence 334455555555554 344433322 3456777777777763 5555542 3456777888
Q ss_pred EEEeccc
Q 048518 235 LEIINCW 241 (259)
Q Consensus 235 L~l~~c~ 241 (259)
|++.+++
T Consensus 284 L~L~~Np 290 (440)
T 3zyj_A 284 IHLHHNP 290 (440)
T ss_dssp EECCSSC
T ss_pred EEcCCCC
Confidence 8877654
No 5
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.43 E-value=3e-12 Score=105.46 Aligned_cols=202 Identities=15% Similarity=0.111 Sum_probs=126.2
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
.+++++|++.++ .++.+... . +..+++|+.|+++++. +..+.+. ....+++|+.|+++++..+..+...
T Consensus 31 ~~~l~~L~l~~n-~i~~~~~~-~-~~~~~~L~~L~l~~n~-l~~~~~~----~~~~l~~L~~L~l~~n~~l~~~~~~--- 99 (285)
T 1ozn_A 31 PAASQRIFLHGN-RISHVPAA-S-FRACRNLTILWLHSNV-LARIDAA----AFTGLALLEQLDLSDNAQLRSVDPA--- 99 (285)
T ss_dssp CTTCSEEECTTS-CCCEECTT-T-TTTCTTCCEEECCSSC-CCEECTT----TTTTCTTCCEEECCSCTTCCCCCTT---
T ss_pred CCCceEEEeeCC-cCCccCHH-H-cccCCCCCEEECCCCc-cceeCHh----hcCCccCCCEEeCCCCCCccccCHH---
Confidence 568888888876 34554332 2 5578889999988873 4433111 3345788888888887655554211
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceeccc-CCCCCcccC---Cccccc-cCC-Ccccc
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGP-DMEKPTTTQ---GFTEIN-AED-DQVTF 175 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~l~~---~~~~~~-~~~-~~~~l 175 (259)
.+..+++|++|+++++ .++.+.+ ..+.++++|+.|++.++.- ..++.. -+.++.+.. ..+.++ ... .+..+
T Consensus 100 ~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 176 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRC-GLQELGP-GLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176 (285)
T ss_dssp TTTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred HhcCCcCCCEEECCCC-cCCEECH-hHhhCCcCCCEEECCCCcc-cccCHhHhccCCCccEEECCCCcccccCHHHhcCc
Confidence 2456788888888877 3554433 3345678888888887643 232221 222222221 222222 222 25568
Q ss_pred CCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccccc
Q 048518 176 PRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWSM 243 (259)
Q Consensus 176 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 243 (259)
++|+.|+++++ .++.+.... +..+++|+.|+++++. ++.++. .....+++|++|++++++-.
T Consensus 177 ~~L~~L~l~~n-~l~~~~~~~---~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 177 HSLDRLLLHQN-RVAHVHPHA---FRDLGRLMTLYLFANN-LSALPT-EALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTCCEEECCSS-CCCEECTTT---TTTCTTCCEEECCSSC-CSCCCH-HHHTTCTTCCEEECCSSCEE
T ss_pred cccCEEECCCC-cccccCHhH---ccCcccccEeeCCCCc-CCcCCH-HHcccCcccCEEeccCCCcc
Confidence 89999999988 566554333 4567899999999874 566654 24677899999999887543
No 6
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.43 E-value=3.6e-12 Score=111.91 Aligned_cols=199 Identities=14% Similarity=0.114 Sum_probs=97.1
Q ss_pred hccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeeccccccccccccccccC
Q 048518 23 KRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLRE 102 (259)
Q Consensus 23 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 102 (259)
++++.|++.++ .++.+... . +.++++|+.|+++++ .+..+.+. ....+++|+.|+++++. +..+... .
T Consensus 75 ~~l~~L~L~~n-~i~~~~~~-~-~~~l~~L~~L~Ls~n-~i~~~~~~----~~~~l~~L~~L~L~~n~-l~~~~~~---~ 142 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQAD-T-FRHLHHLEVLQLGRN-SIRQIEVG----AFNGLASLNTLELFDNW-LTVIPSG---A 142 (452)
T ss_dssp TTCSEEECCSS-CCCEECTT-T-TTTCTTCCEEECCSS-CCCEECTT----TTTTCTTCCEEECCSSC-CSBCCTT---T
T ss_pred CCccEEECcCC-cCceECHH-H-cCCCCCCCEEECCCC-ccCCcChh----hccCcccCCEEECCCCc-CCccChh---h
Confidence 46666766665 33333222 1 446677777777666 33333111 23345666666666542 2222110 1
Q ss_pred cccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceeccc-CCCCCcccC---CccccccCCC-------
Q 048518 103 DQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGP-DMEKPTTTQ---GFTEINAEDD------- 171 (259)
Q Consensus 103 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~l~~---~~~~~~~~~~------- 171 (259)
+..+++|++|+++++ .++.+ +...+.++++|+.|++.+|..+..++.. -.+++.+.. ..+.+..++.
T Consensus 143 ~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L 220 (452)
T 3zyi_A 143 FEYLSKLRELWLRNN-PIESI-PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGL 220 (452)
T ss_dssp SSSCTTCCEEECCSC-CCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTC
T ss_pred hcccCCCCEEECCCC-Cccee-CHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccc
Confidence 334556666666555 34444 3223345566666666655555444321 111111111 1111222222
Q ss_pred -----------------ccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccE
Q 048518 172 -----------------QVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRH 234 (259)
Q Consensus 172 -----------------~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~ 234 (259)
+..+++|+.|+++++ .++.+.... +..+++|+.|+++++ .++.++.. ....+++|++
T Consensus 221 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~ 294 (452)
T 3zyi_A 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNA---FDGLASLVELNLAHN-NLSSLPHD-LFTPLRYLVE 294 (452)
T ss_dssp CEEECTTSCCSEECGGGGTTCTTCCEEECTTS-CCCEECTTT---TTTCTTCCEEECCSS-CCSCCCTT-SSTTCTTCCE
T ss_pred cEEECcCCcCcccCcccccCccCCCEEEeCCC-cCceECHHH---hcCCCCCCEEECCCC-cCCccChH-HhccccCCCE
Confidence 334455555555554 344433322 345677777777776 45665542 3456777888
Q ss_pred EEEeccc
Q 048518 235 LEIINCW 241 (259)
Q Consensus 235 L~l~~c~ 241 (259)
|++.+++
T Consensus 295 L~L~~Np 301 (452)
T 3zyi_A 295 LHLHHNP 301 (452)
T ss_dssp EECCSSC
T ss_pred EEccCCC
Confidence 8887654
No 7
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.42 E-value=1.9e-12 Score=113.60 Aligned_cols=178 Identities=18% Similarity=0.121 Sum_probs=92.7
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
+++|+.|++.++ .+..+... . +.++++|+.|+++++. +..+... ....+++|+.|+++++. +..+...
T Consensus 98 l~~L~~L~Ls~n-~i~~~~~~-~-~~~l~~L~~L~L~~n~-l~~~~~~----~~~~l~~L~~L~L~~N~-l~~~~~~--- 165 (452)
T 3zyi_A 98 LHHLEVLQLGRN-SIRQIEVG-A-FNGLASLNTLELFDNW-LTVIPSG----AFEYLSKLRELWLRNNP-IESIPSY--- 165 (452)
T ss_dssp CTTCCEEECCSS-CCCEECTT-T-TTTCTTCCEEECCSSC-CSBCCTT----TSSSCTTCCEEECCSCC-CCEECTT---
T ss_pred CCCCCEEECCCC-ccCCcChh-h-ccCcccCCEEECCCCc-CCccChh----hhcccCCCCEEECCCCC-cceeCHh---
Confidence 577788888776 34444322 1 4577788888887763 3333111 12345566666665542 2222100
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCC----------------------CcEEEEEeccCcceecccCCCCCcc
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLG----------------------LQKVEVVNCNKLKMMIGPDMEKPTT 159 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~----------------------L~~L~l~~c~~l~~~~~~~~~~~~l 159 (259)
.+..+++|+.|++++|..++.+ +...+.++++ |+.|+++++.-....+..-.+++.+
T Consensus 166 ~~~~l~~L~~L~l~~~~~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 244 (452)
T 3zyi_A 166 AFNRVPSLMRLDLGELKKLEYI-SEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL 244 (452)
T ss_dssp TTTTCTTCCEEECCCCTTCCEE-CTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTC
T ss_pred HHhcCCcccEEeCCCCCCcccc-ChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCC
Confidence 1334455555555554444444 2222234444 4444444432221111111222222
Q ss_pred cC---Ccccc-cc-CCCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCC
Q 048518 160 TQ---GFTEI-NA-EDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCP 216 (259)
Q Consensus 160 ~~---~~~~~-~~-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~ 216 (259)
.. ..+.+ .. ...+..+++|+.|+++++ .++.+.... ...+++|+.|++++++.
T Consensus 245 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDL---FTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTS---STTCTTCCEEECCSSCE
T ss_pred CEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHH---hccccCCCEEEccCCCc
Confidence 11 11222 22 224567899999999998 777765544 44689999999998764
No 8
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.42 E-value=2e-12 Score=113.19 Aligned_cols=175 Identities=19% Similarity=0.200 Sum_probs=89.6
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeeccc-------------
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLIN------------- 88 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~------------- 88 (259)
+++|+.|++.++. +..+... . +.++++|+.|+++++ .+..+... ....+++|+.|++++
T Consensus 87 l~~L~~L~Ls~n~-i~~i~~~-~-~~~l~~L~~L~L~~n-~l~~~~~~----~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 158 (440)
T 3zyj_A 87 LRHLEILQLSRNH-IRTIEIG-A-FNGLANLNTLELFDN-RLTTIPNG----AFVYLSKLKELWLRNNPIESIPSYAFNR 158 (440)
T ss_dssp CSSCCEEECCSSC-CCEECGG-G-GTTCSSCCEEECCSS-CCSSCCTT----TSCSCSSCCEEECCSCCCCEECTTTTTT
T ss_pred CCCCCEEECCCCc-CCccChh-h-ccCCccCCEEECCCC-cCCeeCHh----HhhccccCceeeCCCCcccccCHHHhhh
Confidence 5667777776663 3333222 1 446677777777765 33332111 122345555555544
Q ss_pred -----------cccccccccccccCcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCccee-cccCCCC
Q 048518 89 -----------LTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMM-IGPDMEK 156 (259)
Q Consensus 89 -----------~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~ 156 (259)
+..+..+... .+..+++|++|+++++ .++.+ |. ...+++|+.|+++++. +..+ +..-.++
T Consensus 159 l~~L~~L~l~~~~~l~~i~~~---~~~~l~~L~~L~L~~n-~l~~~-~~--~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l 230 (440)
T 3zyj_A 159 IPSLRRLDLGELKRLSYISEG---AFEGLSNLRYLNLAMC-NLREI-PN--LTPLIKLDELDLSGNH-LSAIRPGSFQGL 230 (440)
T ss_dssp CTTCCEEECCCCTTCCEECTT---TTTTCSSCCEEECTTS-CCSSC-CC--CTTCSSCCEEECTTSC-CCEECTTTTTTC
T ss_pred CcccCEeCCCCCCCcceeCcc---hhhcccccCeecCCCC-cCccc-cc--cCCCcccCEEECCCCc-cCccChhhhccC
Confidence 3333332110 1334555555555554 33333 21 2345556666665542 2222 2122222
Q ss_pred CcccC---Cccccc-cC-CCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCC
Q 048518 157 PTTTQ---GFTEIN-AE-DDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCP 216 (259)
Q Consensus 157 ~~l~~---~~~~~~-~~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~ 216 (259)
+.+.. ..+.+. .. ..+..+++|+.|+++++ .++.+.... ...+++|+.|++++++.
T Consensus 231 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDL---FTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTT---TSSCTTCCEEECCSSCE
T ss_pred ccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhH---hccccCCCEEEcCCCCc
Confidence 22221 222222 22 24567899999999998 777776544 44679999999988764
No 9
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.41 E-value=2.2e-12 Score=105.77 Aligned_cols=177 Identities=15% Similarity=0.139 Sum_probs=116.6
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
+++|+.|.+.++. ++.+ ..+..+++|+.|+++++. +..+ + ....+++|+.|+++++ .+..+...
T Consensus 40 l~~L~~L~l~~~~-i~~~----~~l~~l~~L~~L~l~~n~-l~~~-~-----~l~~l~~L~~L~L~~n-~l~~~~~~--- 103 (272)
T 3rfs_A 40 LNSIDQIIANNSD-IKSV----QGIQYLPNVRYLALGGNK-LHDI-S-----ALKELTNLTYLILTGN-QLQSLPNG--- 103 (272)
T ss_dssp HTTCCEEECTTSC-CCCC----TTGGGCTTCCEEECTTSC-CCCC-G-----GGTTCTTCCEEECTTS-CCCCCCTT---
T ss_pred ccceeeeeeCCCC-cccc----cccccCCCCcEEECCCCC-CCCc-h-----hhcCCCCCCEEECCCC-ccCccChh---
Confidence 7888888887763 4443 225578899999999874 3332 1 3456789999999886 34333211
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEE
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEEL 181 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L 181 (259)
.+..+++|++|+++++ .++.+ +...+.++++|+.|++.+| .+..++.. .+..+++|+.|
T Consensus 104 ~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~------------------~~~~l~~L~~L 162 (272)
T 3rfs_A 104 VFDKLTNLKELVLVEN-QLQSL-PDGVFDKLTNLTYLNLAHN-QLQSLPKG------------------VFDKLTNLTEL 162 (272)
T ss_dssp TTTTCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTT------------------TTTTCTTCCEE
T ss_pred HhcCCcCCCEEECCCC-cCCcc-CHHHhccCCCCCEEECCCC-ccCccCHH------------------HhccCccCCEE
Confidence 1467888999999887 46655 3334467889999999887 34333221 13357788888
Q ss_pred eeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccc
Q 048518 182 ELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCW 241 (259)
Q Consensus 182 ~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 241 (259)
+++++ .++.+.... +..+++|+.|+++++. ++.++.. ....+++|++|++.+++
T Consensus 163 ~l~~n-~l~~~~~~~---~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 163 DLSYN-QLQSLPEGV---FDKLTQLKDLRLYQNQ-LKSVPDG-VFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp ECCSS-CCCCCCTTT---TTTCTTCCEEECCSSC-CSCCCTT-TTTTCTTCCEEECCSSC
T ss_pred ECCCC-CcCccCHHH---hcCCccCCEEECCCCc-CCccCHH-HHhCCcCCCEEEccCCC
Confidence 88887 566554432 3457888888888775 5555442 34567888888887754
No 10
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.39 E-value=5.2e-12 Score=103.33 Aligned_cols=193 Identities=16% Similarity=0.103 Sum_probs=124.6
Q ss_pred eeeeccchHHH----HHhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEee
Q 048518 10 SLLLGNDGTKM----LLKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLD 85 (259)
Q Consensus 10 ~l~ls~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~ 85 (259)
.++.+.+.+.. ..++++.|++.++. +..+... . +.++++|+.|+++++. +..+ +.. ....+++|+.|+
T Consensus 20 ~l~~~~~~l~~ip~~~~~~l~~L~l~~n~-l~~~~~~-~-~~~l~~L~~L~l~~n~-l~~i-~~~---~~~~l~~L~~L~ 91 (270)
T 2o6q_A 20 SVDCSSKKLTAIPSNIPADTKKLDLQSNK-LSSLPSK-A-FHRLTKLRLLYLNDNK-LQTL-PAG---IFKELKNLETLW 91 (270)
T ss_dssp EEECTTSCCSSCCSCCCTTCSEEECCSSC-CSCCCTT-S-SSSCTTCCEEECCSSC-CSCC-CTT---TTSSCTTCCEEE
T ss_pred EEEccCCCCCccCCCCCCCCCEEECcCCC-CCeeCHH-H-hcCCCCCCEEECCCCc-cCee-Chh---hhcCCCCCCEEE
Confidence 35555555443 24578999998874 4444322 2 5688999999999874 4443 211 234578999999
Q ss_pred ccccccccccccccccCcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccc
Q 048518 86 LINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTE 165 (259)
Q Consensus 86 l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~ 165 (259)
++++. +..+.. ..+..+++|++|+++++ .++.+ +...+..+++|+.|+++++. +..++..
T Consensus 92 l~~n~-l~~~~~---~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~------------- 151 (270)
T 2o6q_A 92 VTDNK-LQALPI---GVFDQLVNLAELRLDRN-QLKSL-PPRVFDSLTKLTYLSLGYNE-LQSLPKG------------- 151 (270)
T ss_dssp CCSSC-CCCCCT---TTTTTCSSCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTT-------------
T ss_pred CCCCc-CCcCCH---hHcccccCCCEEECCCC-ccCee-CHHHhCcCcCCCEEECCCCc-CCccCHh-------------
Confidence 98753 333311 12467889999999887 46655 33344678999999998863 3333211
Q ss_pred cccCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccc
Q 048518 166 INAEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCW 241 (259)
Q Consensus 166 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 241 (259)
.+..+++|+.|+++++ .++.+.... +..+++|++|+++++ .++.++.. ....+++|++|++.+++
T Consensus 152 -----~~~~l~~L~~L~L~~n-~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 152 -----VFDKLTSLKELRLYNN-QLKRVPEGA---FDKLTELKTLKLDNN-QLKRVPEG-AFDSLEKLKMLQLQENP 216 (270)
T ss_dssp -----TTTTCTTCCEEECCSS-CCSCCCTTT---TTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSC
T ss_pred -----HccCCcccceeEecCC-cCcEeChhH---hccCCCcCEEECCCC-cCCcCCHH-HhccccCCCEEEecCCC
Confidence 1345788888888887 566654433 345788888888887 46666553 34567888888887754
No 11
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.39 E-value=9.7e-14 Score=116.93 Aligned_cols=64 Identities=16% Similarity=0.239 Sum_probs=33.3
Q ss_pred cccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEecc
Q 048518 173 VTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINC 240 (259)
Q Consensus 173 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 240 (259)
..+|+|+.|++++|..++...... +..+++|++|++++|..+..... .....+++|++|++.+|
T Consensus 219 ~~~~~L~~L~l~~~~~l~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 219 RRCPNLVHLDLSDSVMLKNDCFQE---FFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHCTTCSEEECTTCTTCCGGGGGG---GGGCTTCCEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTS
T ss_pred hhCCCCCEEeCCCCCcCCHHHHHH---HhCCCCCCEeeCCCCCCCCHHHH-HHHhcCCCCCEEeccCc
Confidence 345666666666664343221111 33456666666666664332211 12345666666666666
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.35 E-value=1.1e-11 Score=109.42 Aligned_cols=62 Identities=21% Similarity=0.187 Sum_probs=34.1
Q ss_pred ccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccc
Q 048518 174 TFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCW 241 (259)
Q Consensus 174 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 241 (259)
.+++|+.|+++++ .++.+.... +..+++|+.|+++++. ++.++.. ....+++|++|++.+++
T Consensus 270 ~l~~L~~L~L~~n-~l~~~~~~~---~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 270 ELLRLQEIQLVGG-QLAVVEPYA---FRGLNYLRVLNVSGNQ-LTTLEES-VFHSVGNLETLILDSNP 331 (477)
T ss_dssp TCTTCCEEECCSS-CCSEECTTT---BTTCTTCCEEECCSSC-CSCCCGG-GBSCGGGCCEEECCSSC
T ss_pred ccccCCEEECCCC-ccceECHHH---hcCcccCCEEECCCCc-CceeCHh-HcCCCcccCEEEccCCC
Confidence 3445555555544 333332222 3456777777777663 5555432 33556777788777654
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.35 E-value=6.4e-12 Score=106.25 Aligned_cols=194 Identities=12% Similarity=0.122 Sum_probs=94.3
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeeccccccccccc-----
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETIC----- 96 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~----- 96 (259)
+++|++|++.++. +..+. .+..+++|+.|++++|.....+ + ....+++|+.|+++++.- ..+.
T Consensus 109 l~~L~~L~l~~n~-i~~~~----~~~~l~~L~~L~l~~n~~~~~~-~-----~~~~l~~L~~L~l~~~~~-~~~~~~~~l 176 (347)
T 4fmz_A 109 LTNLRELYLNEDN-ISDIS----PLANLTKMYSLNLGANHNLSDL-S-----PLSNMTGLNYLTVTESKV-KDVTPIANL 176 (347)
T ss_dssp CTTCSEEECTTSC-CCCCG----GGTTCTTCCEEECTTCTTCCCC-G-----GGTTCTTCCEEECCSSCC-CCCGGGGGC
T ss_pred CCcCCEEECcCCc-ccCch----hhccCCceeEEECCCCCCcccc-c-----chhhCCCCcEEEecCCCc-CCchhhccC
Confidence 5777777777663 33332 1446777777777777554433 1 122344555555444321 1110
Q ss_pred ------------cccccCcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCccc---C
Q 048518 97 ------------YSQLREDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTT---Q 161 (259)
Q Consensus 97 ------------~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~---~ 161 (259)
...++.+..+++|+.+++.++ .++...+ ...+++|+.|++++|.- ..++. ...++.+. -
T Consensus 177 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~---~~~~~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~l 250 (347)
T 4fmz_A 177 TDLYSLSLNYNQIEDISPLASLTSLHYFTAYVN-QITDITP---VANMTRLNSLKIGNNKI-TDLSP-LANLSQLTWLEI 250 (347)
T ss_dssp TTCSEEECTTSCCCCCGGGGGCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEEC
T ss_pred CCCCEEEccCCcccccccccCCCccceeecccC-CCCCCch---hhcCCcCCEEEccCCcc-CCCcc-hhcCCCCCEEEC
Confidence 000011233444455554443 2222211 23455666666655432 11111 11111111 1
Q ss_pred CccccccCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccc
Q 048518 162 GFTEINAEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCW 241 (259)
Q Consensus 162 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 241 (259)
..+.+..++....+++|+.|+++++ .++.+.. ...+++|+.|++++|+ ++..+. .....+++|++|++++|+
T Consensus 251 ~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~-----~~~l~~L~~L~L~~n~-l~~~~~-~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 251 GTNQISDINAVKDLTKLKMLNVGSN-QISDISV-----LNNLSQLNSLFLNNNQ-LGNEDM-EVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp CSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG-----GGGCTTCSEEECCSSC-CCGGGH-HHHHTCTTCSEEECCSSS
T ss_pred CCCccCCChhHhcCCCcCEEEccCC-ccCCChh-----hcCCCCCCEEECcCCc-CCCcCh-hHhhccccCCEEEccCCc
Confidence 2222233334556677777777776 4554421 3456778888887775 343322 235567788888887775
No 14
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.34 E-value=1.3e-11 Score=103.05 Aligned_cols=187 Identities=13% Similarity=0.129 Sum_probs=117.7
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
+++|++|++.++ .+..+. .+..+++|+.|++++|. +..+ + ....+++|+.|+++++. +..+ +
T Consensus 40 l~~L~~L~l~~~-~i~~l~----~~~~l~~L~~L~L~~n~-i~~~-~-----~~~~l~~L~~L~L~~n~-l~~~-----~ 101 (308)
T 1h6u_A 40 LDGITTLSAFGT-GVTTIE----GVQYLNNLIGLELKDNQ-ITDL-A-----PLKNLTKITELELSGNP-LKNV-----S 101 (308)
T ss_dssp HHTCCEEECTTS-CCCCCT----TGGGCTTCCEEECCSSC-CCCC-G-----GGTTCCSCCEEECCSCC-CSCC-----G
T ss_pred cCCcCEEEeeCC-CccCch----hhhccCCCCEEEccCCc-CCCC-h-----hHccCCCCCEEEccCCc-CCCc-----h
Confidence 788888888777 344442 25578888888888773 4333 1 13457788888887764 3332 2
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCccc---CCccccccCCCccccCCc
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTT---QGFTEINAEDDQVTFPRL 178 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~---~~~~~~~~~~~~~~l~~L 178 (259)
.+..+++|+.|+++++ .++.+ +. ...+++|+.|+++++. +..++. ...++.+. -..+.+...+.+..+++|
T Consensus 102 ~~~~l~~L~~L~l~~n-~l~~~-~~--l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L 175 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTST-QITDV-TP--LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKL 175 (308)
T ss_dssp GGTTCTTCCEEECTTS-CCCCC-GG--GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTC
T ss_pred hhcCCCCCCEEECCCC-CCCCc-hh--hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCC
Confidence 2456777888888776 35544 22 3567778888777753 222221 11222221 122233333346678899
Q ss_pred CEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEecccc
Q 048518 179 EELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWS 242 (259)
Q Consensus 179 ~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 242 (259)
+.|+++++ .++.+.. ...+++|++|+++++. ++.++. ...+++|++|++.+++-
T Consensus 176 ~~L~l~~n-~l~~~~~-----l~~l~~L~~L~L~~N~-l~~~~~---l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 176 TTLKADDN-KISDISP-----LASLPNLIEVHLKNNQ-ISDVSP---LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CEEECCSS-CCCCCGG-----GGGCTTCCEEECTTSC-CCBCGG---GTTCTTCCEEEEEEEEE
T ss_pred CEEECCCC-ccCcChh-----hcCCCCCCEEEccCCc-cCcccc---ccCCCCCCEEEccCCee
Confidence 99999887 5655533 4467899999998875 566653 46789999999988754
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.33 E-value=1.6e-11 Score=108.36 Aligned_cols=199 Identities=19% Similarity=0.125 Sum_probs=97.1
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
+++|++|++.++ .+..+... . +.++++|+.|+++++. +..+ +.. ....+++|+.|+++++. +..+.. .
T Consensus 55 l~~L~~L~L~~n-~i~~~~~~-~-~~~l~~L~~L~L~~n~-l~~~-~~~---~~~~l~~L~~L~Ls~n~-i~~~~~---~ 122 (477)
T 2id5_A 55 FPHLEELELNEN-IVSAVEPG-A-FNNLFNLRTLGLRSNR-LKLI-PLG---VFTGLSNLTKLDISENK-IVILLD---Y 122 (477)
T ss_dssp CTTCCEEECTTS-CCCEECTT-T-TTTCTTCCEEECCSSC-CCSC-CTT---SSTTCTTCCEEECTTSC-CCEECT---T
T ss_pred CCCCCEEECCCC-ccCEeChh-h-hhCCccCCEEECCCCc-CCcc-Ccc---cccCCCCCCEEECCCCc-cccCCh---h
Confidence 455666666555 23333111 1 3456666666666552 2222 110 12335666666665542 111100 0
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecc-cCCCCCcccC----CccccccC-CCcccc
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIG-PDMEKPTTTQ----GFTEINAE-DDQVTF 175 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~l~~----~~~~~~~~-~~~~~l 175 (259)
.+..+++|++|+++++ .++.+.+. .+.++++|+.|++.+|. +..++. .-..++.+.. ++...... ..+..+
T Consensus 123 ~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l 199 (477)
T 2id5_A 123 MFQDLYNLKSLEVGDN-DLVYISHR-AFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199 (477)
T ss_dssp TTTTCTTCCEEEECCT-TCCEECTT-SSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSC
T ss_pred HccccccCCEEECCCC-ccceeChh-hccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccC
Confidence 1345556666666554 34444222 22455666666666542 222111 0111111111 11111111 134456
Q ss_pred CCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccc
Q 048518 176 PRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCW 241 (259)
Q Consensus 176 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 241 (259)
++|+.|+++++..+..+..... ...+|+.|+++++. ++.++. .....+++|++|+++++.
T Consensus 200 ~~L~~L~l~~~~~~~~~~~~~~----~~~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 200 YRLKVLEISHWPYLDTMTPNCL----YGLNLTSLSITHCN-LTAVPY-LAVRHLVYLRFLNLSYNP 259 (477)
T ss_dssp TTCCEEEEECCTTCCEECTTTT----TTCCCSEEEEESSC-CCSCCH-HHHTTCTTCCEEECCSSC
T ss_pred cccceeeCCCCccccccCcccc----cCccccEEECcCCc-ccccCH-HHhcCccccCeeECCCCc
Confidence 7788888887766666654432 23578888888774 566653 245678899999998874
No 16
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.33 E-value=4e-13 Score=113.15 Aligned_cols=208 Identities=14% Similarity=0.079 Sum_probs=105.9
Q ss_pred Hhccceeeeccccccce--eccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQN--VVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQ 99 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 99 (259)
+++|++|++.++. +.. +... +..+++|+.|++++|...... .. ....+++|+.|++++|..+.......
T Consensus 92 ~~~L~~L~L~~~~-l~~~~~~~~---~~~~~~L~~L~L~~~~l~~~~-~~----~l~~~~~L~~L~L~~~~~l~~~~l~~ 162 (336)
T 2ast_B 92 PFRVQHMDLSNSV-IEVSTLHGI---LSQCSKLQNLSLEGLRLSDPI-VN----TLAKNSNLVRLNLSGCSGFSEFALQT 162 (336)
T ss_dssp CBCCCEEECTTCE-ECHHHHHHH---HTTBCCCSEEECTTCBCCHHH-HH----HHTTCTTCSEEECTTCBSCCHHHHHH
T ss_pred CCCCCEEEccCCC-cCHHHHHHH---HhhCCCCCEEeCcCcccCHHH-HH----HHhcCCCCCEEECCCCCCCCHHHHHH
Confidence 4667777776664 222 1111 346677777777766321111 10 12336677777777665444321100
Q ss_pred ccCcccCCCccEEEEecCCCceEecchhhhhhcC-CCcEEEEEecc-Ccc--eecccCCCCCcccC----Ccccc--ccC
Q 048518 100 LREDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLL-GLQKVEVVNCN-KLK--MMIGPDMEKPTTTQ----GFTEI--NAE 169 (259)
Q Consensus 100 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~-~L~~L~l~~c~-~l~--~~~~~~~~~~~l~~----~~~~~--~~~ 169 (259)
.+..+++|++|++++|..+++......+..++ +|+.|++++|. .+. .++.....++.+.. ++..+ ..+
T Consensus 163 --~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 240 (336)
T 2ast_B 163 --LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF 240 (336)
T ss_dssp --HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG
T ss_pred --HHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH
Confidence 13456667777776665555321223345566 67777776664 221 11111111222211 22211 223
Q ss_pred CCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccccccccccc
Q 048518 170 DDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWSMEGIVNT 249 (259)
Q Consensus 170 ~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 249 (259)
..+..+++|+.|++++|..+..... ..+..+++|+.|++++| +....-..+... ++.|++ +|..+..+...
T Consensus 241 ~~l~~l~~L~~L~l~~~~~~~~~~~---~~l~~~~~L~~L~l~~~--i~~~~~~~l~~~---l~~L~l-~~n~l~~~~~~ 311 (336)
T 2ast_B 241 QEFFQLNYLQHLSLSRCYDIIPETL---LELGEIPTLKTLQVFGI--VPDGTLQLLKEA---LPHLQI-NCSHFTTIARP 311 (336)
T ss_dssp GGGGGCTTCCEEECTTCTTCCGGGG---GGGGGCTTCCEEECTTS--SCTTCHHHHHHH---STTSEE-SCCCSCCTTCS
T ss_pred HHHhCCCCCCEeeCCCCCCCCHHHH---HHHhcCCCCCEEeccCc--cCHHHHHHHHhh---CcceEE-ecccCccccCC
Confidence 3456789999999999964433211 12456899999999999 332211112233 455556 45556555443
No 17
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.33 E-value=1.4e-11 Score=103.53 Aligned_cols=64 Identities=11% Similarity=-0.012 Sum_probs=41.4
Q ss_pred CccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccc
Q 048518 171 DQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCW 241 (259)
Q Consensus 171 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 241 (259)
.+..+++|+.|+++++ .++.+.... +..+++|+.|+++++. ++.+|. ....+++|++|++++|+
T Consensus 211 ~~~~l~~L~~L~Ls~n-~l~~~~~~~---~~~l~~L~~L~L~~N~-l~~lp~--~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 211 SLKGLNNLAKLGLSFN-SISAVDNGS---LANTPHLRELHLNNNK-LVKVPG--GLADHKYIQVVYLHNNN 274 (330)
T ss_dssp GGTTCTTCCEEECCSS-CCCEECTTT---GGGSTTCCEEECCSSC-CSSCCT--TTTTCSSCCEEECCSSC
T ss_pred HhcCCCCCCEEECCCC-cCceeChhh---ccCCCCCCEEECCCCc-CccCCh--hhccCCCcCEEECCCCc
Confidence 3455677777777776 455543322 4456778888887774 556655 34567778888887763
No 18
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.32 E-value=7.2e-12 Score=106.36 Aligned_cols=41 Identities=15% Similarity=0.046 Sum_probs=28.6
Q ss_pred ccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccccc
Q 048518 201 YCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWSM 243 (259)
Q Consensus 201 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 243 (259)
..+++|+.|+++++. ++.+|. .....+++|++|++++++-.
T Consensus 274 ~~l~~L~~L~Ls~N~-l~~i~~-~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 274 NQISGLLELEFSRNQ-LKSVPD-GIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp HTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCBC
T ss_pred hcccCCCEEECCCCC-CCccCH-HHHhcCCCCCEEEeeCCCcc
Confidence 356788888888774 566665 23467788888888887543
No 19
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.31 E-value=5.1e-11 Score=102.46 Aligned_cols=108 Identities=16% Similarity=0.105 Sum_probs=59.6
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
+++|++|++.++. ++..... . +..+++|+.|+++++. +..+.+. ....+++|+.|+++++ .+..+...
T Consensus 68 l~~L~~L~L~~n~-i~~~~~~-~-~~~l~~L~~L~L~~n~-l~~~~~~----~~~~l~~L~~L~L~~n-~l~~l~~~--- 135 (390)
T 3o6n_A 68 FRQVELLNLNDLQ-IEEIDTY-A-FAYAHTIQKLYMGFNA-IRYLPPH----VFQNVPLLTVLVLERN-DLSSLPRG--- 135 (390)
T ss_dssp CCCCSEEECTTSC-CCEECTT-T-TTTCTTCCEEECCSSC-CCCCCTT----TTTTCTTCCEEECCSS-CCCCCCTT---
T ss_pred cccCcEEECCCCc-ccccChh-h-ccCCCCcCEEECCCCC-CCcCCHH----HhcCCCCCCEEECCCC-ccCcCCHH---
Confidence 6788888888773 4444332 2 5578888888888774 3333111 2345677777777665 22222100
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEec
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNC 143 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 143 (259)
.+..+++|++|+++++ .++.+.+ ..+..+++|+.|+++++
T Consensus 136 ~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 136 IFHNTPKLTTLSMSNN-NLERIED-DTFQATTSLQNLQLSSN 175 (390)
T ss_dssp TTTTCTTCCEEECCSS-CCCBCCT-TTTSSCTTCCEEECCSS
T ss_pred HhcCCCCCcEEECCCC-ccCccCh-hhccCCCCCCEEECCCC
Confidence 1245666666666665 3443322 22345566666666554
No 20
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.31 E-value=5.5e-12 Score=104.89 Aligned_cols=131 Identities=12% Similarity=0.006 Sum_probs=56.5
Q ss_pred cccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcc-eecccCCCCCcccC----Ccccccc-CCCccccC
Q 048518 103 DQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLK-MMIGPDMEKPTTTQ----GFTEINA-EDDQVTFP 176 (259)
Q Consensus 103 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~l~~----~~~~~~~-~~~~~~l~ 176 (259)
+..+++|+.|+++++ .++...+. .+.++++|+.|++.++.-.. .++.....++.+.. ++..... +..+..++
T Consensus 122 ~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 199 (306)
T 2z66_A 122 FLSLRNLIYLDISHT-HTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 199 (306)
T ss_dssp TTTCTTCCEEECTTS-CCEECSTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhccCCCEEECCCC-cCCccchh-hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC
Confidence 345556666666655 33333222 23455666666666553322 12222222222211 1111111 11234455
Q ss_pred CcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhc-CCccEEEEeccc
Q 048518 177 RLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSL-GQLRHLEIINCW 241 (259)
Q Consensus 177 ~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l-~~L~~L~l~~c~ 241 (259)
+|+.|+++++ .++.+.... ...+++|+.|++++++- +..+.. ....+ ++|++|++++++
T Consensus 200 ~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~L~~N~l-~~~~~~-~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 200 SLQVLNMSHN-NFFSLDTFP---YKCLNSLQVLDYSLNHI-MTSKKQ-ELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TCCEEECTTS-CCSBCCSGG---GTTCTTCCEEECTTSCC-CBCSSS-SCCCCCTTCCEEECTTCC
T ss_pred CCCEEECCCC-ccCccChhh---ccCcccCCEeECCCCCC-cccCHH-HHHhhhccCCEEEccCCC
Confidence 6666666555 333332221 23456666666666543 322221 12333 256666666543
No 21
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.30 E-value=9.7e-12 Score=103.41 Aligned_cols=216 Identities=15% Similarity=0.112 Sum_probs=139.8
Q ss_pred eeeeccchHHH----HHhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEee
Q 048518 10 SLLLGNDGTKM----LLKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLD 85 (259)
Q Consensus 10 ~l~ls~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~ 85 (259)
.++.+.+++.. ..+++++|++.++. ++.++.. . +.++++|+.|+++++. +... +.. ......+++|+.|+
T Consensus 11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~-l~~i~~~-~-~~~l~~L~~L~L~~n~-l~~~-~~~-~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIPSSATRLELESNK-LQSLPHG-V-FDKLTQLTKLSLSSNG-LSFK-GCC-SQSDFGTTSLKYLD 84 (306)
T ss_dssp EEECCSSCCSSCCSCCCTTCCEEECCSSC-CCCCCTT-T-TTTCTTCSEEECCSSC-CCEE-EEE-EHHHHSCSCCCEEE
T ss_pred EEEcCCCCcccCCCCCCCCCCEEECCCCc-cCccCHh-H-hhccccCCEEECCCCc-cCcc-cCc-ccccccccccCEEE
Confidence 34444444332 25789999998874 5555433 1 4689999999999884 3322 100 00223478999999
Q ss_pred ccccccccccccccccCcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccC---C
Q 048518 86 LINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQ---G 162 (259)
Q Consensus 86 l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~---~ 162 (259)
++++. +..+.. .+..+++|++|+++++ .++.+.+...+..+++|+.|+++++......+.....++.+.. .
T Consensus 85 Ls~n~-i~~l~~----~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 85 LSFNG-VITMSS----NFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158 (306)
T ss_dssp CCSCS-EEEEEE----EEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred CCCCc-cccChh----hcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence 99864 222211 2567899999999887 4565533244568999999999987543322222233333322 2
Q ss_pred cccc-c--cCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEec
Q 048518 163 FTEI-N--AEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIIN 239 (259)
Q Consensus 163 ~~~~-~--~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 239 (259)
.+.+ . .+..+..+++|+.|+++++ .++.+.... +..+++|+.|+++++. ++.++... ...+++|++|++++
T Consensus 159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~---~~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~ 232 (306)
T 2z66_A 159 GNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTA---FNSLSSLQVLNMSHNN-FFSLDTFP-YKCLNSLQVLDYSL 232 (306)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTT---TTTCTTCCEEECTTSC-CSBCCSGG-GTTCTTCCEEECTT
T ss_pred CCccccccchhHHhhCcCCCEEECCCC-CcCCcCHHH---hcCCCCCCEEECCCCc-cCccChhh-ccCcccCCEeECCC
Confidence 2222 2 3445678899999999998 666664433 4568999999999876 56665533 46789999999999
Q ss_pred cccc
Q 048518 240 CWSM 243 (259)
Q Consensus 240 c~~l 243 (259)
|..-
T Consensus 233 N~l~ 236 (306)
T 2z66_A 233 NHIM 236 (306)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 8543
No 22
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.30 E-value=2.4e-11 Score=100.59 Aligned_cols=188 Identities=19% Similarity=0.149 Sum_probs=123.6
Q ss_pred eeeccchHHHH----HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeec
Q 048518 11 LLLGNDGTKML----LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDL 86 (259)
Q Consensus 11 l~ls~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l 86 (259)
++.+++++..+ .++++.|++.++. +..+... . +..+++|+.|+++++. +..+ + ....+++|+.|++
T Consensus 15 l~~~~~~l~~ip~~~~~~l~~L~L~~N~-l~~~~~~-~-~~~l~~L~~L~L~~n~-l~~~-~-----~~~~l~~L~~L~L 84 (290)
T 1p9a_G 15 VNCDKRNLTALPPDLPKDTTILHLSENL-LYTFSLA-T-LMPYTRLTQLNLDRAE-LTKL-Q-----VDGTLPVLGTLDL 84 (290)
T ss_dssp EECTTSCCSSCCSCCCTTCCEEECTTSC-CSEEEGG-G-GTTCTTCCEEECTTSC-CCEE-E-----CCSCCTTCCEEEC
T ss_pred EECCCCCCCcCCCCCCCCCCEEEcCCCc-CCccCHH-H-hhcCCCCCEEECCCCc-cCcc-c-----CCCCCCcCCEEEC
Confidence 44554444332 4678888888874 4444322 2 5578899999998874 4443 2 1246788999998
Q ss_pred cccccccccccccccCcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCcccc
Q 048518 87 INLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEI 166 (259)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~ 166 (259)
++. .+..+.. .+..+++|+.|+++++ .++.+ +...+.++++|+.|+++++. +..++..
T Consensus 85 s~N-~l~~l~~----~~~~l~~L~~L~l~~N-~l~~l-~~~~~~~l~~L~~L~L~~N~-l~~~~~~-------------- 142 (290)
T 1p9a_G 85 SHN-QLQSLPL----LGQTLPALTVLDVSFN-RLTSL-PLGALRGLGELQELYLKGNE-LKTLPPG-------------- 142 (290)
T ss_dssp CSS-CCSSCCC----CTTTCTTCCEEECCSS-CCCCC-CSSTTTTCTTCCEEECTTSC-CCCCCTT--------------
T ss_pred CCC-cCCcCch----hhccCCCCCEEECCCC-cCccc-CHHHHcCCCCCCEEECCCCC-CCccChh--------------
Confidence 875 3333211 2567888999999887 56666 33334678899999888863 3333221
Q ss_pred ccCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccc
Q 048518 167 NAEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCW 241 (259)
Q Consensus 167 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 241 (259)
.+..+++|+.|+++++ .++.++... ...+++|+.|+++++. ++.+|. .....++|+++++.+++
T Consensus 143 ----~~~~l~~L~~L~L~~N-~l~~l~~~~---~~~l~~L~~L~L~~N~-l~~ip~--~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 143 ----LLTPTPKLEKLSLANN-NLTELPAGL---LNGLENLDTLLLQENS-LYTIPK--GFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp ----TTTTCTTCCEEECTTS-CCSCCCTTT---TTTCTTCCEEECCSSC-CCCCCT--TTTTTCCCSEEECCSCC
T ss_pred ----hcccccCCCEEECCCC-cCCccCHHH---hcCcCCCCEEECCCCc-CCccCh--hhcccccCCeEEeCCCC
Confidence 1345788999999887 677765543 3457899999998865 667766 34556788999887654
No 23
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.30 E-value=2e-11 Score=103.59 Aligned_cols=194 Identities=20% Similarity=0.164 Sum_probs=122.9
Q ss_pred eeeccchHHH----HHhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeec
Q 048518 11 LLLGNDGTKM----LLKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDL 86 (259)
Q Consensus 11 l~ls~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l 86 (259)
++.+++.+.. ..+++++|++.++. ++.+... . +.++++|+.|+++++ .+..+.+. ....+++|+.|++
T Consensus 36 c~~~~~~l~~iP~~~~~~L~~L~l~~n~-i~~~~~~-~-~~~l~~L~~L~L~~n-~l~~~~~~----~~~~l~~L~~L~L 107 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLTEAVKSLDLSNNR-ITYISNS-D-LQRCVNLQALVLTSN-GINTIEED----SFSSLGSLEHLDL 107 (353)
T ss_dssp EECCSTTCSSCCTTCCTTCCEEECTTSC-CCEECTT-T-TTTCTTCCEEECTTS-CCCEECTT----TTTTCTTCCEEEC
T ss_pred eeCCCCCcccccccccccCcEEECCCCc-CcccCHH-H-hccCCCCCEEECCCC-ccCccCHh----hcCCCCCCCEEEC
Confidence 4455554433 24688999998874 5555432 2 568899999999988 44443121 2445788999999
Q ss_pred cccccccccccccccCcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCcccc
Q 048518 87 INLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEI 166 (259)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~ 166 (259)
+++ .+..+... .+..+++|++|+++++ .++.+.....+.++++|+.|+++++..+..++..
T Consensus 108 s~n-~l~~~~~~---~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-------------- 168 (353)
T 2z80_A 108 SYN-YLSNLSSS---WFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK-------------- 168 (353)
T ss_dssp CSS-CCSSCCHH---HHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT--------------
T ss_pred CCC-cCCcCCHh---HhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHH--------------
Confidence 875 23332110 1457889999999887 4554422134467899999999998766555321
Q ss_pred ccCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccc
Q 048518 167 NAEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCW 241 (259)
Q Consensus 167 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 241 (259)
.+..+++|+.|+++++ .++.+.... +..+++|++|+++++. ++.++. .....+++|++|+++++.
T Consensus 169 ----~~~~l~~L~~L~l~~n-~l~~~~~~~---l~~l~~L~~L~l~~n~-l~~~~~-~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 169 ----DFAGLTFLEELEIDAS-DLQSYEPKS---LKSIQNVSHLILHMKQ-HILLLE-IFVDVTSSVECLELRDTD 233 (353)
T ss_dssp ----TTTTCCEEEEEEEEET-TCCEECTTT---TTTCSEEEEEEEECSC-STTHHH-HHHHHTTTEEEEEEESCB
T ss_pred ----HccCCCCCCEEECCCC-CcCccCHHH---HhccccCCeecCCCCc-cccchh-hhhhhcccccEEECCCCc
Confidence 2345677888888877 455443332 4456788888887766 454443 234456788888887764
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.29 E-value=1.1e-11 Score=112.61 Aligned_cols=63 Identities=14% Similarity=0.058 Sum_probs=33.8
Q ss_pred ccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcC-CccEEEEeccc
Q 048518 172 QVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLG-QLRHLEIINCW 241 (259)
Q Consensus 172 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~-~L~~L~l~~c~ 241 (259)
+..+++|+.|+++++ .++.+.+.. +..+++|+.|+++++. ++.+|.. ...++ +|+++++.+++
T Consensus 493 ~~~l~~L~~L~Ls~N-~l~~~~~~~---~~~l~~L~~L~l~~N~-l~~~p~~--~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHN-NLLFLDSSH---YNQLYSLSTLDCSFNR-IETSKGI--LQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp TTTCTTCCEEECCSS-CCSCEEGGG---TTTCTTCCEEECTTSC-CCCEESC--GGGSCTTCCEEECCSCC
T ss_pred hcccccCCEEECCCC-cCCCcCHHH---ccCCCcCCEEECCCCc-CcccCHh--HhhhcccCcEEEccCCC
Confidence 344556666666655 333332222 3345666677776665 5555552 44554 47777776654
No 25
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.29 E-value=4.5e-11 Score=101.02 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=35.1
Q ss_pred ccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEecc
Q 048518 172 QVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINC 240 (259)
Q Consensus 172 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 240 (259)
...+++|+.+++.++ .++.+.. ...+++|++|++++|. ++.++. ...+++|++|++++|
T Consensus 195 ~~~l~~L~~L~l~~n-~l~~~~~-----~~~~~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 195 LASLTSLHYFTAYVN-QITDITP-----VANMTRLNSLKIGNNK-ITDLSP---LANLSQLTWLEIGTN 253 (347)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGG-----GGGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSS
T ss_pred ccCCCccceeecccC-CCCCCch-----hhcCCcCCEEEccCCc-cCCCcc---hhcCCCCCEEECCCC
Confidence 334455555555544 2222211 3456788888888775 444443 557788888888877
No 26
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.28 E-value=2.4e-11 Score=101.54 Aligned_cols=201 Identities=10% Similarity=-0.065 Sum_probs=118.8
Q ss_pred Hhccceeeeccccccc-eeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeeccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQ-NVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQL 100 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 100 (259)
+++|++|++.++..+. ..+.. +..+++|+.|+++++.....+ +. ....+++|+.|+++++.--..+.
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l~~~~-p~----~~~~l~~L~~L~Ls~N~l~~~~p---- 142 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPA---IAKLTQLHYLYITHTNVSGAI-PD----FLSQIKTLVTLDFSYNALSGTLP---- 142 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGG---GGGCTTCSEEEEEEECCEEEC-CG----GGGGCTTCCEEECCSSEEESCCC----
T ss_pred CCCCCeeeCCCCCcccccCChh---HhcCCCCCEEECcCCeeCCcC-CH----HHhCCCCCCEEeCCCCccCCcCC----
Confidence 6778888887543443 33323 457888888888877433232 21 23457888888887753221110
Q ss_pred cCcccCCCccEEEEecCCCceEecchhhhhhcC-CCcEEEEEeccCcceecccCCC--CCcccCCccccc-c-CCCcccc
Q 048518 101 REDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLL-GLQKVEVVNCNKLKMMIGPDME--KPTTTQGFTEIN-A-EDDQVTF 175 (259)
Q Consensus 101 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~-~L~~L~l~~c~~l~~~~~~~~~--~~~l~~~~~~~~-~-~~~~~~l 175 (259)
..+..+++|++|+++++ .++...|..+ ..++ +|+.|+++++.-...++..... +..+.-..+.++ . +..+..+
T Consensus 143 ~~~~~l~~L~~L~L~~N-~l~~~~p~~l-~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l 220 (313)
T 1ogq_A 143 PSISSLPNLVGITFDGN-RISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD 220 (313)
T ss_dssp GGGGGCTTCCEEECCSS-CCEEECCGGG-GCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTT
T ss_pred hHHhcCCCCCeEECcCC-cccCcCCHHH-hhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcC
Confidence 12567888888888887 4554445554 3555 8888888876543333322222 122221112221 2 2235567
Q ss_pred CCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccccc
Q 048518 176 PRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWSM 243 (259)
Q Consensus 176 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 243 (259)
++|+.|+++++ .++..... ...+++|++|+++++.--..+|. ....+++|++|+++++..-
T Consensus 221 ~~L~~L~L~~N-~l~~~~~~----~~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 221 KNTQKIHLAKN-SLAFDLGK----VGLSKNLNGLDLRNNRIYGTLPQ--GLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp SCCSEEECCSS-EECCBGGG----CCCCTTCCEEECCSSCCEECCCG--GGGGCTTCCEEECCSSEEE
T ss_pred CCCCEEECCCC-ceeeecCc----ccccCCCCEEECcCCcccCcCCh--HHhcCcCCCEEECcCCccc
Confidence 88889988887 34322221 33568899999988774334444 4567889999999888544
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.28 E-value=2.9e-11 Score=105.88 Aligned_cols=112 Identities=15% Similarity=0.115 Sum_probs=48.3
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
+++|++|++.++.....+... . +.++++|+.|+++++.. ..+.+. ....+++|+.|+++++. +....... .
T Consensus 53 l~~L~~L~L~~n~~~~~i~~~-~-~~~l~~L~~L~Ls~n~l-~~~~~~----~~~~l~~L~~L~L~~n~-l~~~~~~~-~ 123 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLVIRNN-T-FRGLSSLIILKLDYNQF-LQLETG----AFNGLANLEVLTLTQCN-LDGAVLSG-N 123 (455)
T ss_dssp CTTCCEEECCCCSTTCEECTT-T-TTTCTTCCEEECTTCTT-CEECTT----TTTTCTTCCEEECTTSC-CBTHHHHS-S
T ss_pred CccccEEECcCCcccceECcc-c-ccccccCCEEeCCCCcc-CccChh----hccCcccCCEEeCCCCC-CCccccCc-c
Confidence 455666666555332222111 1 44566666666666532 221011 22335566666665542 11100000 0
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEec
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNC 143 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 143 (259)
.+..+++|++|+++++ .++...+..++.++++|+.|+++++
T Consensus 124 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 124 FFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp TTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred cccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCC
Confidence 0334555555555554 2333323333344555555555443
No 28
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.28 E-value=3.7e-11 Score=109.01 Aligned_cols=37 Identities=27% Similarity=0.468 Sum_probs=18.3
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCS 61 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 61 (259)
+++|++|++.++. +...... . +..+++|+.|+++++.
T Consensus 300 l~~L~~L~l~~n~-l~~~~~~-~-~~~l~~L~~L~l~~n~ 336 (606)
T 3t6q_A 300 LSTLKKLVLSANK-FENLCQI-S-ASNFPSLTHLSIKGNT 336 (606)
T ss_dssp CTTCCEEECTTCC-CSBGGGG-C-GGGCTTCSEEECCSCS
T ss_pred cccCCEEECccCC-cCcCchh-h-hhccCcCCEEECCCCC
Confidence 4566666666653 2222111 1 3355666666666553
No 29
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.27 E-value=2.2e-11 Score=101.98 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=33.6
Q ss_pred ccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEecccc
Q 048518 174 TFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWS 242 (259)
Q Consensus 174 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 242 (259)
.+++|+.|+++++ .++.+... +..+++|+.|+++++. ++.+|. ....+++|++|++++++-
T Consensus 189 ~l~~L~~L~Ls~N-~l~~l~~~----~~~l~~L~~L~L~~N~-l~~l~~--~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 189 VFAKLKTLDLSSN-KLAFMGPE----FQSAAGVTWISLRNNK-LVLIEK--ALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp CCTTCCEEECCSS-CCCEECGG----GGGGTTCSEEECTTSC-CCEECT--TCCCCTTCCEEECTTCCC
T ss_pred ccccCCEEECCCC-cCCcchhh----hcccCcccEEECcCCc-ccchhh--HhhcCCCCCEEEccCCCc
Confidence 3566666666665 44444332 2345666666666653 455544 234556666666666543
No 30
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.27 E-value=4.7e-11 Score=108.35 Aligned_cols=205 Identities=13% Similarity=0.036 Sum_probs=95.6
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
+++|++|++.++ .++.++.. +..+++|+.|+++++.. ..+.+. ....+++|+.|+++++.....+...
T Consensus 277 l~~L~~L~l~~n-~l~~lp~~---l~~l~~L~~L~l~~n~l-~~~~~~----~~~~l~~L~~L~l~~n~~~~~~~~~--- 344 (606)
T 3t6q_A 277 FSGLQELDLTAT-HLSELPSG---LVGLSTLKKLVLSANKF-ENLCQI----SASNFPSLTHLSIKGNTKRLELGTG--- 344 (606)
T ss_dssp CTTCSEEECTTS-CCSCCCSS---CCSCTTCCEEECTTCCC-SBGGGG----CGGGCTTCSEEECCSCSSCCBCCSS---
T ss_pred ccCCCEEeccCC-ccCCCChh---hcccccCCEEECccCCc-CcCchh----hhhccCcCCEEECCCCCcccccchh---
Confidence 567788887776 34444333 45778888888887743 222111 2234566666666554322111000
Q ss_pred CcccCCCccEEEEecCC-------------------------CceEecchhhhhhcCCCcEEEEEeccCcceeccc-CCC
Q 048518 102 EDQSFSNLRIIYVYSCP-------------------------KLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGP-DME 155 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~-------------------------~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~ 155 (259)
.+..+++|++|+++++. .++...+. .+..+++|+.|++.++......+.. ...
T Consensus 345 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 423 (606)
T 3t6q_A 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE-AFKECPQLELLDLAFTRLKVKDAQSPFQN 423 (606)
T ss_dssp TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT-TTTTCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH-HhcCCccCCeEECCCCcCCCcccchhhhC
Confidence 12344444444444442 22323221 1233444444444443221111100 111
Q ss_pred CCcccC----CccccccC-CCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcC
Q 048518 156 KPTTTQ----GFTEINAE-DDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLG 230 (259)
Q Consensus 156 ~~~l~~----~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~ 230 (259)
++.+.. ++...... ..+..+++|+.|+++++ .++.........+..+++|+.|++++|. ++.+++. ....++
T Consensus 424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~ 500 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQH-AFTSLK 500 (606)
T ss_dssp CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTT-TTTTCT
T ss_pred cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCCc-cCccChh-hhcccc
Confidence 111111 11111111 12445667777777766 3332111111114567788888888775 4555332 346678
Q ss_pred CccEEEEecccc
Q 048518 231 QLRHLEIINCWS 242 (259)
Q Consensus 231 ~L~~L~l~~c~~ 242 (259)
+|++|++++|..
T Consensus 501 ~L~~L~Ls~N~l 512 (606)
T 3t6q_A 501 MMNHVDLSHNRL 512 (606)
T ss_dssp TCCEEECCSSCC
T ss_pred CCCEEECCCCcc
Confidence 888888887743
No 31
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.26 E-value=1.6e-11 Score=110.40 Aligned_cols=133 Identities=15% Similarity=0.080 Sum_probs=74.0
Q ss_pred ccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccC----Ccccc--ccCCCccccCC
Q 048518 104 QSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQ----GFTEI--NAEDDQVTFPR 177 (259)
Q Consensus 104 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~----~~~~~--~~~~~~~~l~~ 177 (259)
..+++|++|+++++ .++...+...+.++++|+.|++++|......+..-.+++.+.. ++... ..+..+..+++
T Consensus 393 ~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 393 LGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp ETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred cccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence 34555555555554 2333322222345566666666655433222222222222221 22111 23334567788
Q ss_pred cCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccccc
Q 048518 178 LEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWSM 243 (259)
Q Consensus 178 L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 243 (259)
|+.|++++| .++.+.... +..+++|+.|++++|. ++.++.. ....+++|++|++.+++--
T Consensus 472 L~~L~l~~n-~l~~~~~~~---~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 472 LTFLDLSQC-QLEQLSPTA---FNSLSSLQVLNMASNQ-LKSVPDG-IFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CCEEECTTS-CCCEECTTT---TTTCTTCCEEECCSSC-CSCCCTT-TTTTCTTCCEEECCSSCBC
T ss_pred CCEEECCCC-ccccCChhh---hhcccCCCEEeCCCCc-CCCCCHH-HhhcccCCcEEEecCCccc
Confidence 888888888 555554333 4467899999998874 6666542 3567889999999886543
No 32
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.25 E-value=5.8e-11 Score=110.90 Aligned_cols=66 Identities=11% Similarity=-0.046 Sum_probs=40.6
Q ss_pred CCCcccEeecccccccccccccccc-CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCccee
Q 048518 77 VFPLLESLDLINLTNLETICYSQLR-EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMM 149 (259)
Q Consensus 77 ~~~~L~~L~l~~~~~l~~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 149 (259)
.+++|+.|+++++.-... +| .+..+++|+.|++++| .++...|..+ .++++|+.|++++|.....+
T Consensus 488 ~l~~L~~L~L~~N~l~~~-----~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l-~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 488 NCTNLNWISLSNNRLTGE-----IPKWIGRLENLAILKLSNN-SFSGNIPAEL-GDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp GCTTCCEEECCSSCCCSC-----CCGGGGGCTTCCEEECCSS-CCEEECCGGG-GGCTTCCEEECCSSEEESBC
T ss_pred cCCCCCEEEccCCccCCc-----CChHHhcCCCCCEEECCCC-cccCcCCHHH-cCCCCCCEEECCCCccCCcC
Confidence 355666666665532211 12 2567788888888887 4554445544 57888888888877544333
No 33
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.24 E-value=5.4e-11 Score=100.08 Aligned_cols=207 Identities=15% Similarity=0.104 Sum_probs=114.9
Q ss_pred eeeccchHHH----HHhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeec
Q 048518 11 LLLGNDGTKM----LLKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDL 86 (259)
Q Consensus 11 l~ls~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l 86 (259)
++++++++.. ..++++.|++.++. +..+... . +.++++|+.|+++++. +..+.+. ....+++|+.|++
T Consensus 38 l~~~~~~l~~ip~~~~~~l~~L~l~~n~-i~~~~~~-~-~~~l~~L~~L~L~~n~-l~~~~~~----~~~~l~~L~~L~L 109 (332)
T 2ft3_A 38 VQCSDLGLKAVPKEISPDTTLLDLQNND-ISELRKD-D-FKGLQHLYALVLVNNK-ISKIHEK----AFSPLRKLQKLYI 109 (332)
T ss_dssp EECCSSCCSSCCSCCCTTCCEEECCSSC-CCEECTT-T-TTTCTTCCEEECCSSC-CCEECGG----GSTTCTTCCEEEC
T ss_pred EECCCCCccccCCCCCCCCeEEECCCCc-CCccCHh-H-hhCCCCCcEEECCCCc-cCccCHh----HhhCcCCCCEEEC
Confidence 4455444432 25688999988874 5554332 2 5688999999999884 4433121 3455788888888
Q ss_pred cccccccccccccccCcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcc--eecccCC--CC------
Q 048518 87 INLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLK--MMIGPDM--EK------ 156 (259)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~--~~~~~~~--~~------ 156 (259)
+++. +..+ | ...+++|++|+++++ .++.+ +...+.++++|+.|++.++.--. ..+..-. .+
T Consensus 110 ~~n~-l~~l-----~-~~~~~~L~~L~l~~n-~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~ 180 (332)
T 2ft3_A 110 SKNH-LVEI-----P-PNLPSSLVELRIHDN-RIRKV-PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRIS 180 (332)
T ss_dssp CSSC-CCSC-----C-SSCCTTCCEEECCSS-CCCCC-CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCC
T ss_pred CCCc-CCcc-----C-ccccccCCEEECCCC-ccCcc-CHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECc
Confidence 8752 3332 2 122377888888776 45545 33334567888888877654311 1111000 00
Q ss_pred ---------------CcccCCccccc-cC-CCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCc
Q 048518 157 ---------------PTTTQGFTEIN-AE-DDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKY 219 (259)
Q Consensus 157 ---------------~~l~~~~~~~~-~~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~ 219 (259)
..+.-..+.+. .. ..+..+++|+.|+++++ .++.+.... +..+++|+.|+++++. ++.
T Consensus 181 ~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~L~~N~-l~~ 255 (332)
T 2ft3_A 181 EAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGS---LSFLPTLRELHLDNNK-LSR 255 (332)
T ss_dssp SSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTG---GGGCTTCCEEECCSSC-CCB
T ss_pred CCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCcCChhH---hhCCCCCCEEECCCCc-Cee
Confidence 01110111111 11 13445667777777766 444443322 3456777777777764 556
Q ss_pred cCChhHHhhcCCccEEEEeccc
Q 048518 220 MFSYSMANSLGQLRHLEIINCW 241 (259)
Q Consensus 220 ~~~~~~~~~l~~L~~L~l~~c~ 241 (259)
+|. ....+++|++|++++++
T Consensus 256 lp~--~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 256 VPA--GLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp CCT--TGGGCTTCCEEECCSSC
T ss_pred cCh--hhhcCccCCEEECCCCC
Confidence 655 34566777777777663
No 34
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.23 E-value=1.2e-10 Score=90.74 Aligned_cols=151 Identities=11% Similarity=0.125 Sum_probs=79.4
Q ss_pred CCCCccEEEEecCcCcceecccccccccCCCCcccEeeccccccccccccccccCcccCCCccEEEEecCCCceEecchh
Q 048518 48 GFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFS 127 (259)
Q Consensus 48 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 127 (259)
.+++|+.|+++++. +..+ + ....+++|+.|+++++ .+..+ +.+..+++|++|+++++ .++...+..
T Consensus 42 ~l~~L~~L~l~~n~-i~~l-~-----~l~~l~~L~~L~l~~n-~~~~~-----~~l~~l~~L~~L~l~~n-~l~~~~~~~ 107 (197)
T 4ezg_A 42 QMNSLTYITLANIN-VTDL-T-----GIEYAHNIKDLTINNI-HATNY-----NPISGLSNLERLRIMGK-DVTSDKIPN 107 (197)
T ss_dssp HHHTCCEEEEESSC-CSCC-T-----TGGGCTTCSEEEEESC-CCSCC-----GGGTTCTTCCEEEEECT-TCBGGGSCC
T ss_pred hcCCccEEeccCCC-ccCh-H-----HHhcCCCCCEEEccCC-CCCcc-----hhhhcCCCCCEEEeECC-ccCcccChh
Confidence 45566666666652 2222 1 1234566666666665 33222 12445666777777665 333321222
Q ss_pred hhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCcc
Q 048518 128 MAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLT 207 (259)
Q Consensus 128 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~ 207 (259)
+..+++|+.|++++|.-....+. .+..+++|+.|++++|..++.+.. +..+++|+
T Consensus 108 -l~~l~~L~~L~Ls~n~i~~~~~~-------------------~l~~l~~L~~L~L~~n~~i~~~~~-----l~~l~~L~ 162 (197)
T 4ezg_A 108 -LSGLTSLTLLDISHSAHDDSILT-------------------KINTLPKVNSIDLSYNGAITDIMP-----LKTLPELK 162 (197)
T ss_dssp -CTTCTTCCEEECCSSBCBGGGHH-------------------HHTTCSSCCEEECCSCTBCCCCGG-----GGGCSSCC
T ss_pred -hcCCCCCCEEEecCCccCcHhHH-------------------HHhhCCCCCEEEccCCCCccccHh-----hcCCCCCC
Confidence 24566677776666533221110 123456777777777644555431 34567777
Q ss_pred EEEEecCCCCCccCChhHHhhcCCccEEEEeccc
Q 048518 208 KVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCW 241 (259)
Q Consensus 208 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 241 (259)
.|++++|. ++.++ ....+++|++|++.+++
T Consensus 163 ~L~l~~n~-i~~~~---~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 163 SLNIQFDG-VHDYR---GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EEECTTBC-CCCCT---TGGGCSSCCEEEECBC-
T ss_pred EEECCCCC-CcChH---HhccCCCCCEEEeeCcc
Confidence 77776664 44443 24456777777776654
No 35
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.23 E-value=4.4e-11 Score=108.50 Aligned_cols=200 Identities=16% Similarity=0.067 Sum_probs=126.4
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
+++|+.|++.++...... . +..+++|+.|+++++. +... .. .......+++|+.|+++++. +..+. .
T Consensus 327 l~~L~~L~l~~n~~~~~~----~-~~~l~~L~~L~ls~n~-l~~~-~~-~~~~~~~~~~L~~L~L~~n~-l~~~~----~ 393 (606)
T 3vq2_A 327 LPFLKSLTLTMNKGSISF----K-KVALPSLSYLDLSRNA-LSFS-GC-CSYSDLGTNSLRHLDLSFNG-AIIMS----A 393 (606)
T ss_dssp CSSCCEEEEESCSSCEEC----C-CCCCTTCCEEECCSSC-EEEE-EE-CCHHHHCCSCCCEEECCSCS-EEEEC----C
T ss_pred CCccceeeccCCcCccch----h-hccCCCCCEEECcCCc-cCCC-cc-hhhhhccCCcccEeECCCCc-cccch----h
Confidence 678888998888655544 2 5578999999999874 3322 10 00123456788888887764 32221 1
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccC----Cccccc--cCCCcccc
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQ----GFTEIN--AEDDQVTF 175 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~----~~~~~~--~~~~~~~l 175 (259)
.+..+++|+.|+++++ .++...+...+.++++|+.|++++|......+..-.+++.+.. ++.... .+..+..+
T Consensus 394 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 472 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT 472 (606)
T ss_dssp CCTTCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred hccCCCCCCeeECCCC-ccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccC
Confidence 2556777888887776 3444434234456777888877776544333333333333322 222222 23346778
Q ss_pred CCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccc
Q 048518 176 PRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCW 241 (259)
Q Consensus 176 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 241 (259)
++|+.|++++| .++.+.... +..+++|+.|++++|. ++..++. ....+++|++|++++|.
T Consensus 473 ~~L~~L~Ls~n-~l~~~~~~~---~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 473 TNLTFLDLSKC-QLEQISWGV---FDTLHRLQLLNMSHNN-LLFLDSS-HYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp TTCCEEECTTS-CCCEECTTT---TTTCTTCCEEECCSSC-CSCEEGG-GTTTCTTCCEEECTTSC
T ss_pred CCCCEEECCCC-cCCccChhh---hcccccCCEEECCCCc-CCCcCHH-HccCCCcCCEEECCCCc
Confidence 99999999999 666654443 4568999999999986 4555332 45678999999999985
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.23 E-value=7.5e-11 Score=101.40 Aligned_cols=62 Identities=16% Similarity=0.045 Sum_probs=33.5
Q ss_pred ccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccc
Q 048518 172 QVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCW 241 (259)
Q Consensus 172 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 241 (259)
+..+++|+.|+++++ .++.+... ...+++|+.|++++++ ++.++. ....+++|++|++.+|+
T Consensus 268 ~~~l~~L~~L~L~~n-~l~~~~~~----~~~l~~L~~L~L~~n~-l~~~~~--~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 268 FVKMQRLERLYISNN-RLVALNLY----GQPIPTLKVLDLSHNH-LLHVER--NQPQFDRLENLYLDHNS 329 (390)
T ss_dssp GTTCSSCCEEECCSS-CCCEEECS----SSCCTTCCEEECCSSC-CCCCGG--GHHHHTTCSEEECCSSC
T ss_pred ccccccCCEEECCCC-cCcccCcc----cCCCCCCCEEECCCCc-ceecCc--cccccCcCCEEECCCCc
Confidence 445666777777665 44444322 2245666666666653 444443 23445566666665553
No 37
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.23 E-value=5.1e-11 Score=105.62 Aligned_cols=64 Identities=19% Similarity=0.224 Sum_probs=39.6
Q ss_pred ccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccccc
Q 048518 172 QVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWSM 243 (259)
Q Consensus 172 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 243 (259)
...+++|+.|+++++ .++.++.. +..+++|+.|+++++. ++.+|. ....+++|+.+++++++..
T Consensus 187 ~~~l~~L~~L~Ls~N-~l~~~~~~----~~~l~~L~~L~Ls~N~-l~~lp~--~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 187 QVVFAKLKTLDLSSN-KLAFMGPE----FQSAAGVTWISLRNNK-LVLIEK--ALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCCCTTCCEEECCSS-CCCEECGG----GGGGTTCSEEECTTSC-CCEECT--TCCCCTTCCEEECTTCCBC
T ss_pred cccCCCCCEEECCCC-CCCCCCHh----HcCCCCccEEEecCCc-Ccccch--hhccCCCCCEEEcCCCCCc
Confidence 334677777777776 55554332 3356777777777754 455654 3455677777777776543
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.22 E-value=2e-11 Score=102.13 Aligned_cols=201 Identities=12% Similarity=-0.054 Sum_probs=128.9
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
+++|++|++.++.-....+.. +.++++|+.|+++++.....+ +. ....+++|+.|+++++.--..+. .
T Consensus 100 l~~L~~L~Ls~n~l~~~~p~~---~~~l~~L~~L~Ls~N~l~~~~-p~----~~~~l~~L~~L~L~~N~l~~~~p-~--- 167 (313)
T 1ogq_A 100 LTQLHYLYITHTNVSGAIPDF---LSQIKTLVTLDFSYNALSGTL-PP----SISSLPNLVGITFDGNRISGAIP-D--- 167 (313)
T ss_dssp CTTCSEEEEEEECCEEECCGG---GGGCTTCCEEECCSSEEESCC-CG----GGGGCTTCCEEECCSSCCEEECC-G---
T ss_pred CCCCCEEECcCCeeCCcCCHH---HhCCCCCCEEeCCCCccCCcC-Ch----HHhcCCCCCeEECcCCcccCcCC-H---
Confidence 788999999888543344433 558999999999988533232 21 34457899999998864221221 1
Q ss_pred CcccCC-CccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccC----CccccccCCCccccC
Q 048518 102 EDQSFS-NLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQ----GFTEINAEDDQVTFP 176 (259)
Q Consensus 102 ~~~~~~-~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~----~~~~~~~~~~~~~l~ 176 (259)
.+..++ +|+.|+++++ .++...|..+ ..++ |+.|+++++.-....+.....++.+.. ++.....++....++
T Consensus 168 ~l~~l~~~L~~L~L~~N-~l~~~~~~~~-~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~ 244 (313)
T 1ogq_A 168 SYGSFSKLFTSMTISRN-RLTGKIPPTF-ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK 244 (313)
T ss_dssp GGGCCCTTCCEEECCSS-EEEEECCGGG-GGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCT
T ss_pred HHhhhhhcCcEEECcCC-eeeccCChHH-hCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccC
Confidence 245566 8899999887 4555545544 3455 888888876443333333333333321 222222333456689
Q ss_pred CcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEecccccc
Q 048518 177 RLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWSME 244 (259)
Q Consensus 177 ~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 244 (259)
+|+.|+++++ .++...+.. +..+++|+.|++++++--..+|.. ..+++|+.+++.+++.+.
T Consensus 245 ~L~~L~Ls~N-~l~~~~p~~---l~~l~~L~~L~Ls~N~l~~~ip~~---~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 245 NLNGLDLRNN-RIYGTLPQG---LTQLKFLHSLNVSFNNLCGEIPQG---GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp TCCEEECCSS-CCEECCCGG---GGGCTTCCEEECCSSEEEEECCCS---TTGGGSCGGGTCSSSEEE
T ss_pred CCCEEECcCC-cccCcCChH---HhcCcCCCEEECcCCcccccCCCC---ccccccChHHhcCCCCcc
Confidence 9999999998 455332222 557899999999998754466652 678889999999887654
No 39
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.22 E-value=2.6e-10 Score=96.69 Aligned_cols=196 Identities=14% Similarity=0.114 Sum_probs=112.2
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
.+++++|++.++ .++.++.. . +.++++|+.|+++++...+.+ +.. ....+++++.+.+.++..+..+...
T Consensus 29 ~~~l~~L~Ls~N-~i~~i~~~-~-f~~l~~L~~L~Ls~N~i~~~i-~~~---~f~~L~~l~~~l~~~~N~l~~l~~~--- 98 (350)
T 4ay9_X 29 PRNAIELRFVLT-KLRVIQKG-A-FSGFGDLEKIEISQNDVLEVI-EAD---VFSNLPKLHEIRIEKANNLLYINPE--- 98 (350)
T ss_dssp CTTCSEEEEESC-CCSEECTT-S-STTCTTCCEEEEECCTTCCEE-CTT---SBCSCTTCCEEEEEEETTCCEECTT---
T ss_pred CCCCCEEEccCC-cCCCcCHH-H-HcCCCCCCEEECcCCCCCCcc-Chh---HhhcchhhhhhhcccCCcccccCch---
Confidence 578899999886 56666443 2 568999999999988665554 211 2233455555555555555554211
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccC-------------------------CCC
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPD-------------------------MEK 156 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~-------------------------~~~ 156 (259)
.+..+++|+.|+++++ .++.+.+. ......++..+++.++..+..++... ...
T Consensus 99 ~f~~l~~L~~L~l~~n-~l~~~~~~-~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~ 176 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNT-GIKHLPDV-HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG 176 (350)
T ss_dssp SBCCCTTCCEEEEEEE-CCSSCCCC-TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTT
T ss_pred hhhhcccccccccccc-ccccCCch-hhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccc
Confidence 2356677777777665 34433222 22234455666666655555443211 000
Q ss_pred Cccc----CCccccccCCC--ccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcC
Q 048518 157 PTTT----QGFTEINAEDD--QVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLG 230 (259)
Q Consensus 157 ~~l~----~~~~~~~~~~~--~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~ 230 (259)
..+. ++++.++.++. +..+++|+.|+++++ .++.++... +.+|++|.+.++.+++.+|. ..+++
T Consensus 177 ~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~------~~~L~~L~~l~~~~l~~lP~---l~~l~ 246 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYG------LENLKKLRARSTYNLKKLPT---LEKLV 246 (350)
T ss_dssp EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSS------CTTCCEEECTTCTTCCCCCC---TTTCC
T ss_pred cchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhh------hccchHhhhccCCCcCcCCC---chhCc
Confidence 0000 02233333332 355677777777776 666665433 56777888777888887775 35677
Q ss_pred CccEEEEec
Q 048518 231 QLRHLEIIN 239 (259)
Q Consensus 231 ~L~~L~l~~ 239 (259)
+|+.+++.+
T Consensus 247 ~L~~l~l~~ 255 (350)
T 4ay9_X 247 ALMEASLTY 255 (350)
T ss_dssp SCCEEECSC
T ss_pred ChhhCcCCC
Confidence 788887743
No 40
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.22 E-value=9e-11 Score=96.12 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=35.6
Q ss_pred EEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEec
Q 048518 180 ELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIIN 239 (259)
Q Consensus 180 ~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 239 (259)
.|+++++ .++.+..... ...+|+.|+++++. ++.++.. ....+++|++|++++
T Consensus 181 ~L~ls~n-~l~~~~~~~~----~~~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 181 SLDLSLN-PMNFIQPGAF----KEIRLKELALDTNQ-LKSVPDG-IFDRLTSLQKIWLHT 233 (276)
T ss_dssp EEECCSS-CCCEECTTSS----CSCCEEEEECCSSC-CSCCCTT-TTTTCCSCCEEECCS
T ss_pred eeecCCC-cccccCcccc----CCCcccEEECCCCc-eeecCHh-HhcccccccEEEccC
Confidence 6777665 4555544332 23579999998876 6777652 346788999999984
No 41
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.21 E-value=1.7e-10 Score=95.43 Aligned_cols=168 Identities=14% Similarity=0.165 Sum_probs=120.0
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
+++|+.|.+.++ .+..+ ..+..+++|+.|+++++. +..+ + ....+++|+.|+++++. +..+ +
T Consensus 45 l~~L~~L~l~~~-~i~~~----~~~~~l~~L~~L~L~~n~-l~~~-~-----~l~~l~~L~~L~l~~n~-l~~~-----~ 106 (291)
T 1h6t_A 45 LNSIDQIIANNS-DIKSV----QGIQYLPNVTKLFLNGNK-LTDI-K-----PLANLKNLGWLFLDENK-VKDL-----S 106 (291)
T ss_dssp HHTCCEEECTTS-CCCCC----TTGGGCTTCCEEECCSSC-CCCC-G-----GGTTCTTCCEEECCSSC-CCCG-----G
T ss_pred cCcccEEEccCC-CcccC----hhHhcCCCCCEEEccCCc-cCCC-c-----ccccCCCCCEEECCCCc-CCCC-----h
Confidence 889999999887 44444 225678999999999884 4433 1 24568899999998863 3332 2
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEE
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEEL 181 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L 181 (259)
.+..+++|++|+++++ .++.+ + ....+++|+.|++++|. +..+ ..+..+++|+.|
T Consensus 107 ~l~~l~~L~~L~L~~n-~i~~~-~--~l~~l~~L~~L~l~~n~-l~~~--------------------~~l~~l~~L~~L 161 (291)
T 1h6t_A 107 SLKDLKKLKSLSLEHN-GISDI-N--GLVHLPQLESLYLGNNK-ITDI--------------------TVLSRLTKLDTL 161 (291)
T ss_dssp GGTTCTTCCEEECTTS-CCCCC-G--GGGGCTTCCEEECCSSC-CCCC--------------------GGGGGCTTCSEE
T ss_pred hhccCCCCCEEECCCC-cCCCC-h--hhcCCCCCCEEEccCCc-CCcc--------------------hhhccCCCCCEE
Confidence 3578899999999988 45554 2 24678999999998863 3222 124467889999
Q ss_pred eeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEecccc
Q 048518 182 ELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWS 242 (259)
Q Consensus 182 ~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 242 (259)
+++++ .++.+.. +..+++|+.|+++++. ++.++. ...+++|+.|++++++-
T Consensus 162 ~L~~N-~l~~~~~-----l~~l~~L~~L~L~~N~-i~~l~~---l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 162 SLEDN-QISDIVP-----LAGLTKLQNLYLSKNH-ISDLRA---LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp ECCSS-CCCCCGG-----GTTCTTCCEEECCSSC-CCBCGG---GTTCTTCSEEEEEEEEE
T ss_pred EccCC-ccccchh-----hcCCCccCEEECCCCc-CCCChh---hccCCCCCEEECcCCcc
Confidence 99988 5665533 3467899999998874 666643 56788999999988753
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.20 E-value=1e-10 Score=106.16 Aligned_cols=196 Identities=15% Similarity=0.060 Sum_probs=104.3
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
+++|+.|++.++. +..++.. . +..+++|+.|+++++. +..+ +.. ....+++|+.|+++++. +..+.. .
T Consensus 98 l~~L~~L~L~~n~-l~~~~~~-~-~~~l~~L~~L~L~~n~-l~~l-~~~---~~~~l~~L~~L~Ls~N~-l~~~~~---~ 165 (597)
T 3oja_B 98 AHTIQKLYMGFNA-IRYLPPH-V-FQNVPLLTVLVLERND-LSSL-PRG---IFHNTPKLTTLSMSNNN-LERIED---D 165 (597)
T ss_dssp CTTCCEEECCSSC-CCCCCTT-T-TTTCTTCCEEECCSSC-CCCC-CTT---TTTTCTTCCEEECCSSC-CCBCCT---T
T ss_pred CCCCCEEECCCCc-CCCCCHH-H-HcCCCCCCEEEeeCCC-CCCC-CHH---HhccCCCCCEEEeeCCc-CCCCCh---h
Confidence 6788899988874 4444332 1 4688999999999884 4443 211 23457888888888763 332211 1
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccC------------------cceeccc-----------
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNK------------------LKMMIGP----------- 152 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~------------------l~~~~~~----------- 152 (259)
.+..+++|+.|+++++ .++.+ + ...+++|+.|++.++.- +..++..
T Consensus 166 ~~~~l~~L~~L~L~~N-~l~~~-~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~ 240 (597)
T 3oja_B 166 TFQATTSLQNLQLSSN-RLTHV-D---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQ 240 (597)
T ss_dssp TTTTCTTCCEEECTTS-CCSBC-C---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECC
T ss_pred hhhcCCcCcEEECcCC-CCCCc-C---hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECC
Confidence 2456777888887776 34443 2 13355555555443311 0000000
Q ss_pred ---------CCCCCcccC----Ccccccc-CCCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCC
Q 048518 153 ---------DMEKPTTTQ----GFTEINA-EDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLK 218 (259)
Q Consensus 153 ---------~~~~~~l~~----~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~ 218 (259)
...++.+.. ++..... +..+..+++|+.|+++++ .++.++.. ...+++|+.|++++|. ++
T Consensus 241 ~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~----~~~l~~L~~L~Ls~N~-l~ 314 (597)
T 3oja_B 241 HNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLY----GQPIPTLKVLDLSHNH-LL 314 (597)
T ss_dssp SSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECS----SSCCTTCCEEECCSSC-CC
T ss_pred CCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcc----cccCCCCcEEECCCCC-CC
Confidence 000000000 1111111 123344556666666655 44443222 2346788888887775 45
Q ss_pred ccCChhHHhhcCCccEEEEecccc
Q 048518 219 YMFSYSMANSLGQLRHLEIINCWS 242 (259)
Q Consensus 219 ~~~~~~~~~~l~~L~~L~l~~c~~ 242 (259)
.+|. .+..+++|++|++++|..
T Consensus 315 ~i~~--~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 315 HVER--NQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp CCGG--GHHHHTTCSEEECCSSCC
T ss_pred ccCc--ccccCCCCCEEECCCCCC
Confidence 5554 346678888888887753
No 43
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.20 E-value=1.2e-10 Score=107.11 Aligned_cols=131 Identities=12% Similarity=0.047 Sum_probs=81.3
Q ss_pred cccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceeccc---------CCCCCcccC---CccccccCC
Q 048518 103 DQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGP---------DMEKPTTTQ---GFTEINAED 170 (259)
Q Consensus 103 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~---------~~~~~~l~~---~~~~~~~~~ 170 (259)
+..+++|+.|+++++ .++.+ +...+.++++|+.|+++++. +..+... -.+++.+.. ..+.++.++
T Consensus 476 ~~~l~~L~~L~Ls~N-~l~~i-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~ 552 (680)
T 1ziw_A 476 FQPLRNLTILDLSNN-NIANI-NDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 552 (680)
T ss_dssp TTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCC
T ss_pred cccCCCCCEEECCCC-CCCcC-ChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCC
Confidence 567788888888886 46655 33344678888888888764 2222110 111222211 222333332
Q ss_pred --CccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccc
Q 048518 171 --DQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCW 241 (259)
Q Consensus 171 --~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 241 (259)
.+..+++|+.|+++++ .++.++... ...+++|+.|+++++ .++.++...+...+++|+++++.+++
T Consensus 553 ~~~~~~l~~L~~L~Ls~N-~l~~l~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 553 VEVFKDLFELKIIDLGLN-NLNTLPASV---FNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred HHHcccccCcceeECCCC-CCCcCCHhH---hCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCC
Confidence 2467788888888876 677665543 346789999999887 46777654333367889999997754
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.20 E-value=5e-10 Score=94.03 Aligned_cols=196 Identities=18% Similarity=0.098 Sum_probs=119.9
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
.+.++.|++.++ .++.+... . +..+++|+.|+++++. +..+.+. ....+++|+.|+++++. +..+ |
T Consensus 51 ~~~l~~L~L~~n-~i~~~~~~-~-~~~l~~L~~L~L~~n~-l~~~~~~----~~~~l~~L~~L~Ls~n~-l~~l-----~ 116 (330)
T 1xku_A 51 PPDTALLDLQNN-KITEIKDG-D-FKNLKNLHTLILINNK-ISKISPG----AFAPLVKLERLYLSKNQ-LKEL-----P 116 (330)
T ss_dssp CTTCCEEECCSS-CCCCBCTT-T-TTTCTTCCEEECCSSC-CCCBCTT----TTTTCTTCCEEECCSSC-CSBC-----C
T ss_pred CCCCeEEECCCC-cCCEeChh-h-hccCCCCCEEECCCCc-CCeeCHH----HhcCCCCCCEEECCCCc-CCcc-----C
Confidence 467888888777 34444332 1 5688899999998874 3332111 34457889999988753 3333 2
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcc--eecccCCCCCccc---CCccccccCCCccccC
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLK--MMIGPDMEKPTTT---QGFTEINAEDDQVTFP 176 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~--~~~~~~~~~~~l~---~~~~~~~~~~~~~~l~ 176 (259)
...+++|++|+++++ .++.+ +...+.++++|+.|++.++..-. ..+..-..++.+. -..+.+..++.. ..+
T Consensus 117 -~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~ 192 (330)
T 1xku_A 117 -EKMPKTLQELRVHEN-EITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG-LPP 192 (330)
T ss_dssp -SSCCTTCCEEECCSS-CCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS-CCT
T ss_pred -hhhcccccEEECCCC-ccccc-CHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc-ccc
Confidence 223478888888887 45655 44445678889999888765421 1111111222221 111222222211 137
Q ss_pred CcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccc
Q 048518 177 RLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCW 241 (259)
Q Consensus 177 ~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 241 (259)
+|+.|+++++ .++.+.... +..+++|+.|+++++. ++.++.. ....+++|++|++++|.
T Consensus 193 ~L~~L~l~~n-~l~~~~~~~---~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 193 SLTELHLDGN-KITKVDAAS---LKGLNNLAKLGLSFNS-ISAVDNG-SLANTPHLRELHLNNNK 251 (330)
T ss_dssp TCSEEECTTS-CCCEECTGG---GTTCTTCCEEECCSSC-CCEECTT-TGGGSTTCCEEECCSSC
T ss_pred cCCEEECCCC-cCCccCHHH---hcCCCCCCEEECCCCc-CceeChh-hccCCCCCCEEECCCCc
Confidence 8899999887 565553333 4567999999999876 5666542 35678999999999884
No 45
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.20 E-value=2.2e-10 Score=94.17 Aligned_cols=178 Identities=15% Similarity=0.062 Sum_probs=118.1
Q ss_pred CCCCccEEEEecCcCcceecccccccccCCCCcccEeeccccccccccccccccCcccCCCccEEEEecCCCceEecchh
Q 048518 48 GFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFS 127 (259)
Q Consensus 48 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 127 (259)
..++|+.|+++++. +..+... ....+++|+.|+++++ .+..+... .+..+++|++|+++++..++.+.+.
T Consensus 30 ~~~~l~~L~l~~n~-i~~~~~~----~~~~~~~L~~L~l~~n-~l~~~~~~---~~~~l~~L~~L~l~~n~~l~~~~~~- 99 (285)
T 1ozn_A 30 IPAASQRIFLHGNR-ISHVPAA----SFRACRNLTILWLHSN-VLARIDAA---AFTGLALLEQLDLSDNAQLRSVDPA- 99 (285)
T ss_dssp CCTTCSEEECTTSC-CCEECTT----TTTTCTTCCEEECCSS-CCCEECTT---TTTTCTTCCEEECCSCTTCCCCCTT-
T ss_pred CCCCceEEEeeCCc-CCccCHH----HcccCCCCCEEECCCC-ccceeCHh---hcCCccCCCEEeCCCCCCccccCHH-
Confidence 45799999999884 4444111 3456899999999886 34433211 3567899999999998767766443
Q ss_pred hhhhcCCCcEEEEEeccCcceecccCCCCCcccC---Cccccc-cCCC-ccccCCcCEEeeCCCccccccCcCCCccccc
Q 048518 128 MAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQ---GFTEIN-AEDD-QVTFPRLEELELVSLTNIKKLWPDQFQGMYC 202 (259)
Q Consensus 128 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~---~~~~~~-~~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~ 202 (259)
.+..+++|+.|++.++.-....+..-..++.+.. ..+.+. .... +..+++|+.|+++++ .++.+.... +..
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~---~~~ 175 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERA---FRG 175 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTT---TTT
T ss_pred HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHH---hcC
Confidence 3467999999999987543222222233333321 222232 2222 567889999999987 676665543 446
Q ss_pred CCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccc
Q 048518 203 CQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCW 241 (259)
Q Consensus 203 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 241 (259)
+++|+.|+++++. ++.++.. ....+++|++|+++++.
T Consensus 176 l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 176 LHSLDRLLLHQNR-VAHVHPH-AFRDLGRLMTLYLFANN 212 (285)
T ss_dssp CTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSSC
T ss_pred ccccCEEECCCCc-ccccCHh-HccCcccccEeeCCCCc
Confidence 7899999999876 4555332 45678899999998873
No 46
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.19 E-value=3e-10 Score=96.33 Aligned_cols=188 Identities=14% Similarity=0.141 Sum_probs=109.3
Q ss_pred eeeeccchHHHH-------HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCccc
Q 048518 10 SLLLGNDGTKML-------LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLE 82 (259)
Q Consensus 10 ~l~ls~~~~~~~-------~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~ 82 (259)
.|+++++.+..+ +++|++|+++++.-.+.+... . +.++++|+++.+.++..+..+.+. ....+++|+
T Consensus 34 ~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~-~-f~~L~~l~~~l~~~~N~l~~l~~~----~f~~l~~L~ 107 (350)
T 4ay9_X 34 ELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD-V-FSNLPKLHEIRIEKANNLLYINPE----AFQNLPNLQ 107 (350)
T ss_dssp EEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT-S-BCSCTTCCEEEEEEETTCCEECTT----SBCCCTTCC
T ss_pred EEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh-H-hhcchhhhhhhcccCCcccccCch----hhhhccccc
Confidence 455665654322 678888988888655554332 2 456777777776666666665221 234466777
Q ss_pred Eeeccccccccccc--------------------ccccc--CcccC-CCccEEEEecCCCceEecchhhhhhcCCCcEEE
Q 048518 83 SLDLINLTNLETIC--------------------YSQLR--EDQSF-SNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVE 139 (259)
Q Consensus 83 ~L~l~~~~~l~~~~--------------------~~~~~--~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 139 (259)
.|+++++. +..+. ...++ .+... ..++.|+++++ .++.+ +...+ ..++|+.+.
T Consensus 108 ~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i-~~~~f-~~~~L~~l~ 183 (350)
T 4ay9_X 108 YLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEI-HNSAF-NGTQLDELN 183 (350)
T ss_dssp EEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEE-CTTSS-TTEEEEEEE
T ss_pred cccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCC-Chhhc-cccchhHHh
Confidence 77775432 11110 00111 11222 34666777665 46655 32222 346778888
Q ss_pred EEeccCcceecccC-CCCCccc---CCccccccCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEec
Q 048518 140 VVNCNKLKMMIGPD-MEKPTTT---QGFTEINAEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTR 213 (259)
Q Consensus 140 l~~c~~l~~~~~~~-~~~~~l~---~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~ 213 (259)
+.++..+..++... .+++.+. -..+.++.++. ..+..|+.|.+.++.+++.++. +..+++|+.+++.+
T Consensus 184 l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-~~~~~L~~L~~l~~~~l~~lP~-----l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 184 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-YGLENLKKLRARSTYNLKKLPT-----LEKLVALMEASLTY 255 (350)
T ss_dssp CTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-SSCTTCCEEECTTCTTCCCCCC-----TTTCCSCCEEECSC
T ss_pred hccCCcccCCCHHHhccCcccchhhcCCCCcCccCh-hhhccchHhhhccCCCcCcCCC-----chhCcChhhCcCCC
Confidence 88878887776432 3333332 23334444432 3478899999999989988864 34689999999864
No 47
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.19 E-value=1.8e-10 Score=92.35 Aligned_cols=181 Identities=14% Similarity=0.184 Sum_probs=130.3
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
+++|+.|++.++..++.+... . +.++++|+.|++++|..+..+ +.. ....+++|+.|+++++. +..+ |
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~-~-f~~l~~L~~L~l~~~n~l~~i-~~~---~f~~l~~L~~L~l~~n~-l~~l-----p 121 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESH-S-FYNLSKVTHIEIRNTRNLTYI-DPD---ALKELPLLKFLGIFNTG-LKMF-----P 121 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTT-T-EESCTTCCEEEEEEETTCCEE-CTT---SEECCTTCCEEEEEEEC-CCSC-----C
T ss_pred CCCCcEEeCCCCCCcceeCHh-H-cCCCcCCcEEECCCCCCeeEc-CHH---HhCCCCCCCEEeCCCCC-Cccc-----c
Confidence 789999999998657666443 2 568999999999996677766 211 23457999999998863 3333 2
Q ss_pred CcccCCCcc---EEEEecCCCceEecchhhhhhcCCCc-EEEEEeccCcceecccCCCCCcccCCccccccCCCccccCC
Q 048518 102 EDQSFSNLR---IIYVYSCPKLKYLFSFSMAKNLLGLQ-KVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPR 177 (259)
Q Consensus 102 ~~~~~~~L~---~L~l~~c~~l~~~~~~~~~~~l~~L~-~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 177 (259)
.+..+++|+ .|++++++.++.+ +...+.++++|+ .|+++++. +..++.. ....++
T Consensus 122 ~~~~l~~L~~L~~L~l~~N~~l~~i-~~~~~~~l~~L~~~L~l~~n~-l~~i~~~-------------------~~~~~~ 180 (239)
T 2xwt_C 122 DLTKVYSTDIFFILEITDNPYMTSI-PVNAFQGLCNETLTLKLYNNG-FTSVQGY-------------------AFNGTK 180 (239)
T ss_dssp CCTTCCBCCSEEEEEEESCTTCCEE-CTTTTTTTBSSEEEEECCSCC-CCEECTT-------------------TTTTCE
T ss_pred ccccccccccccEEECCCCcchhhc-CcccccchhcceeEEEcCCCC-CcccCHh-------------------hcCCCC
Confidence 245666776 9999998788887 444456899999 99998763 4444321 112378
Q ss_pred cCEEeeCCCccccccCcCCCcccccC-CCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccccc
Q 048518 178 LEELELVSLTNIKKLWPDQFQGMYCC-QNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWSM 243 (259)
Q Consensus 178 L~~L~l~~c~~l~~l~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 243 (259)
|+.|++.+++.++.+.... ...+ ++|+.|++++++ ++.+|.. .+++|++|++.++..+
T Consensus 181 L~~L~L~~n~~l~~i~~~~---~~~l~~~L~~L~l~~N~-l~~l~~~----~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDA---FGGVYSGPSLLDVSQTS-VTALPSK----GLEHLKELIARNTWTL 239 (239)
T ss_dssp EEEEECTTCTTCCEECTTT---TTTCSBCCSEEECTTCC-CCCCCCT----TCTTCSEEECTTC---
T ss_pred CCEEEcCCCCCcccCCHHH---hhccccCCcEEECCCCc-cccCChh----HhccCceeeccCccCC
Confidence 9999999997688876654 3456 899999999854 6777763 5688999999887653
No 48
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.18 E-value=7.6e-11 Score=91.80 Aligned_cols=151 Identities=9% Similarity=0.101 Sum_probs=109.3
Q ss_pred HHhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeeccccccccccccccc
Q 048518 21 LLKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQL 100 (259)
Q Consensus 21 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 100 (259)
-+++|+.|++.++ .+.+++ . +..+++|+.|++++| .+..+ + ....+++|+.|+++++. +.... .
T Consensus 42 ~l~~L~~L~l~~n-~i~~l~-~---l~~l~~L~~L~l~~n-~~~~~-~-----~l~~l~~L~~L~l~~n~-l~~~~---~ 105 (197)
T 4ezg_A 42 QMNSLTYITLANI-NVTDLT-G---IEYAHNIKDLTINNI-HATNY-N-----PISGLSNLERLRIMGKD-VTSDK---I 105 (197)
T ss_dssp HHHTCCEEEEESS-CCSCCT-T---GGGCTTCSEEEEESC-CCSCC-G-----GGTTCTTCCEEEEECTT-CBGGG---S
T ss_pred hcCCccEEeccCC-CccChH-H---HhcCCCCCEEEccCC-CCCcc-h-----hhhcCCCCCEEEeECCc-cCccc---C
Confidence 3889999999887 455543 2 568999999999999 44433 2 34568999999999863 33221 1
Q ss_pred cCcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCE
Q 048518 101 REDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEE 180 (259)
Q Consensus 101 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~ 180 (259)
..+..+++|+.|+++++ .++...+. ....+++|+.|++++|..+..++ .+..+++|+.
T Consensus 106 ~~l~~l~~L~~L~Ls~n-~i~~~~~~-~l~~l~~L~~L~L~~n~~i~~~~--------------------~l~~l~~L~~ 163 (197)
T 4ezg_A 106 PNLSGLTSLTLLDISHS-AHDDSILT-KINTLPKVNSIDLSYNGAITDIM--------------------PLKTLPELKS 163 (197)
T ss_dssp CCCTTCTTCCEEECCSS-BCBGGGHH-HHTTCSSCCEEECCSCTBCCCCG--------------------GGGGCSSCCE
T ss_pred hhhcCCCCCCEEEecCC-ccCcHhHH-HHhhCCCCCEEEccCCCCccccH--------------------hhcCCCCCCE
Confidence 23568899999999998 45543243 34689999999999987555542 2456899999
Q ss_pred EeeCCCccccccCcCCCcccccCCCccEEEEecCC
Q 048518 181 LELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCC 215 (259)
Q Consensus 181 L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~ 215 (259)
|++++| .++.+.. +..+++|++|++++.+
T Consensus 164 L~l~~n-~i~~~~~-----l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 164 LNIQFD-GVHDYRG-----IEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECTTB-CCCCCTT-----GGGCSSCCEEEECBC-
T ss_pred EECCCC-CCcChHH-----hccCCCCCEEEeeCcc
Confidence 999998 5666541 5578999999998865
No 49
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.18 E-value=2.2e-10 Score=100.26 Aligned_cols=65 Identities=18% Similarity=0.134 Sum_probs=42.2
Q ss_pred ccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEecccc
Q 048518 172 QVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWS 242 (259)
Q Consensus 172 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 242 (259)
+..+++|+.|+++++ .++.+.... +..+++|+.|+++++. ++.++.. ....+++|++|++++++-
T Consensus 343 ~~~l~~L~~L~Ls~N-~l~~~~~~~---~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 343 FENLDKLEVLDLSYN-HIRALGDQS---FLGLPNLKELALDTNQ-LKSVPDG-IFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp GTTCTTCCEEECCSS-CCCEECTTT---TTTCTTCCEEECCSSC-CSCCCTT-TTTTCTTCCEEECCSSCB
T ss_pred hcCcccCCEEECCCC-cccccChhh---ccccccccEEECCCCc-cccCCHh-HhccCCcccEEEccCCCc
Confidence 445677777777776 455543332 4457888888887754 5666542 346778888888876543
No 50
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.18 E-value=1.8e-10 Score=101.37 Aligned_cols=60 Identities=8% Similarity=0.113 Sum_probs=32.6
Q ss_pred ccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccc
Q 048518 172 QVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCW 241 (259)
Q Consensus 172 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 241 (259)
...+++|+.|++++| .++.+. ....+++|+.|++++|+ ++..++ ...+++|++|++.+|+
T Consensus 327 ~~~l~~L~~L~l~~n-~l~~~~-----~l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 327 VSSLTKLQRLFFYNN-KVSDVS-----SLANLTNINWLSAGHNQ-ISDLTP---LANLTRITQLGLNDQA 386 (466)
T ss_dssp GGGCTTCCEEECCSS-CCCCCG-----GGTTCTTCCEEECCSSC-CCBCGG---GTTCTTCCEEECCCEE
T ss_pred hccCccCCEeECCCC-ccCCch-----hhccCCCCCEEeCCCCc-cCccch---hhcCCCCCEEeccCCc
Confidence 344555555555555 333331 13356667777776665 333332 4566777777777664
No 51
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.18 E-value=7.4e-11 Score=103.75 Aligned_cols=33 Identities=18% Similarity=0.079 Sum_probs=21.5
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecC
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGC 60 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 60 (259)
+++|++|++.++. ++.+ + +.++++|+.|+++++
T Consensus 84 l~~L~~L~Ls~N~-l~~~----~-~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 84 NTNLTYLACDSNK-LTNL----D-VTPLTKLTYLNCDTN 116 (457)
T ss_dssp CTTCSEEECCSSC-CSCC----C-CTTCTTCCEEECCSS
T ss_pred CCCCCEEECcCCC-Ccee----e-cCCCCcCCEEECCCC
Confidence 5777777777763 3333 2 456777777777766
No 52
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.18 E-value=1.9e-10 Score=107.48 Aligned_cols=204 Identities=12% Similarity=-0.077 Sum_probs=120.4
Q ss_pred HhccceeeeccccccceeccccCCCCCCC-CccEEEEecCcCcceecccccccccCCCCcccEeeccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFP-RLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQL 100 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 100 (259)
+++|++|++.++.-....+.. +..++ +|+.|+++++.....+ .... ....+++|+.|+++++.-...+.
T Consensus 342 l~~L~~L~Ls~n~l~~~~p~~---l~~l~~~L~~L~Ls~N~l~~~~-~~~~--~~~~~~~L~~L~L~~n~l~~~~p---- 411 (768)
T 3rgz_A 342 MRGLKVLDLSFNEFSGELPES---LTNLSASLLTLDLSSNNFSGPI-LPNL--CQNPKNTLQELYLQNNGFTGKIP---- 411 (768)
T ss_dssp CTTCCEEECCSSEEEECCCTT---HHHHTTTCSEEECCSSEEEEEC-CTTT--TCSTTCCCCEEECCSSEEEEECC----
T ss_pred CCCCCEEeCcCCccCccccHH---HHhhhcCCcEEEccCCCcCCCc-Chhh--hhcccCCccEEECCCCccccccC----
Confidence 677888888877433233322 33555 7888888877433222 1110 11225677777777764322210
Q ss_pred cCcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccC----Ccccc-ccCCCcccc
Q 048518 101 REDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQ----GFTEI-NAEDDQVTF 175 (259)
Q Consensus 101 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~----~~~~~-~~~~~~~~l 175 (259)
..+..+++|+.|+++++ .++...|..+ ..+++|+.|++.+|.....++.....++.+.. ++... ..+..+..+
T Consensus 412 ~~l~~l~~L~~L~Ls~N-~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 489 (768)
T 3rgz_A 412 PTLSNCSELVSLHLSFN-YLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489 (768)
T ss_dssp GGGGGCTTCCEEECCSS-EEESCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred HHHhcCCCCCEEECcCC-cccCcccHHH-hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcC
Confidence 02456777777777776 3443434433 46777777777776544444433333333221 22222 223346678
Q ss_pred CCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccccc
Q 048518 176 PRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWSM 243 (259)
Q Consensus 176 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 243 (259)
++|+.|+++++. ++...+.. +..+++|+.|++++|.....+|. ....+++|++|++++|+..
T Consensus 490 ~~L~~L~L~~N~-l~~~~p~~---~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 490 TNLNWISLSNNR-LTGEIPKW---IGRLENLAILKLSNNSFSGNIPA--ELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp TTCCEEECCSSC-CCSCCCGG---GGGCTTCCEEECCSSCCEEECCG--GGGGCTTCCEEECCSSEEE
T ss_pred CCCCEEEccCCc-cCCcCChH---HhcCCCCCEEECCCCcccCcCCH--HHcCCCCCCEEECCCCccC
Confidence 999999999983 44222222 45689999999999876555654 5678899999999988654
No 53
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.18 E-value=1.3e-10 Score=95.07 Aligned_cols=157 Identities=15% Similarity=0.122 Sum_probs=111.8
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
+++|++|++.++. +..+ ..+..+++|+.|+++++. +..+.+. ....+++|+.|+++++. +..+...
T Consensus 62 l~~L~~L~l~~n~-l~~~----~~l~~l~~L~~L~L~~n~-l~~~~~~----~~~~l~~L~~L~L~~n~-l~~~~~~--- 127 (272)
T 3rfs_A 62 LPNVRYLALGGNK-LHDI----SALKELTNLTYLILTGNQ-LQSLPNG----VFDKLTNLKELVLVENQ-LQSLPDG--- 127 (272)
T ss_dssp CTTCCEEECTTSC-CCCC----GGGTTCTTCCEEECTTSC-CCCCCTT----TTTTCTTCCEEECTTSC-CCCCCTT---
T ss_pred CCCCcEEECCCCC-CCCc----hhhcCCCCCCEEECCCCc-cCccChh----HhcCCcCCCEEECCCCc-CCccCHH---
Confidence 7999999999874 4443 226689999999999984 4443111 23567999999999873 3333111
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEE
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEEL 181 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L 181 (259)
.+..+++|++|+++++ .++.+ +...+..+++|+.|++++|. +..++.. .+..+++|+.|
T Consensus 128 ~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~------------------~~~~l~~L~~L 186 (272)
T 3rfs_A 128 VFDKLTNLTYLNLAHN-QLQSL-PKGVFDKLTNLTELDLSYNQ-LQSLPEG------------------VFDKLTQLKDL 186 (272)
T ss_dssp TTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTT------------------TTTTCTTCCEE
T ss_pred HhccCCCCCEEECCCC-ccCcc-CHHHhccCccCCEEECCCCC-cCccCHH------------------HhcCCccCCEE
Confidence 2467899999999998 67766 44445689999999999974 3333211 13457999999
Q ss_pred eeCCCccccccCcCCCcccccCCCccEEEEecCCCC
Q 048518 182 ELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPL 217 (259)
Q Consensus 182 ~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l 217 (259)
+++++ .++.+.... +..+++|+.|++++++..
T Consensus 187 ~L~~N-~l~~~~~~~---~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 187 RLYQN-QLKSVPDGV---FDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp ECCSS-CCSCCCTTT---TTTCTTCCEEECCSSCBC
T ss_pred ECCCC-cCCccCHHH---HhCCcCCCEEEccCCCcc
Confidence 99998 666655433 456899999999987654
No 54
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.18 E-value=2e-10 Score=101.03 Aligned_cols=99 Identities=13% Similarity=0.069 Sum_probs=45.6
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
+++|++|++.++. ++.+ + +..+++|+.|+++++. +..+ ....+++|+.|+++++ .+..+ +
T Consensus 63 l~~L~~L~Ls~n~-l~~~----~-~~~l~~L~~L~Ls~N~-l~~~-------~~~~l~~L~~L~L~~N-~l~~l-----~ 122 (457)
T 3bz5_A 63 LTGLTKLICTSNN-ITTL----D-LSQNTNLTYLACDSNK-LTNL-------DVTPLTKLTYLNCDTN-KLTKL-----D 122 (457)
T ss_dssp CTTCSEEECCSSC-CSCC----C-CTTCTTCSEEECCSSC-CSCC-------CCTTCTTCCEEECCSS-CCSCC-----C
T ss_pred cCCCCEEEccCCc-CCeE----c-cccCCCCCEEECcCCC-Ccee-------ecCCCCcCCEEECCCC-cCCee-----c
Confidence 3455555555442 2222 1 3355555566555552 2222 2234556666666554 22222 1
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCc
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKL 146 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 146 (259)
+..+++|++|+++++ .++.+ + ...+++|+.|++.+|..+
T Consensus 123 -~~~l~~L~~L~l~~N-~l~~l-~---l~~l~~L~~L~l~~n~~~ 161 (457)
T 3bz5_A 123 -VSQNPLLTYLNCARN-TLTEI-D---VSHNTQLTELDCHLNKKI 161 (457)
T ss_dssp -CTTCTTCCEEECTTS-CCSCC-C---CTTCTTCCEEECTTCSCC
T ss_pred -CCCCCcCCEEECCCC-cccee-c---cccCCcCCEEECCCCCcc
Confidence 345555566655554 23332 1 234555555555555433
No 55
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.17 E-value=4.2e-10 Score=90.93 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=17.9
Q ss_pred ccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCC
Q 048518 174 TFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCC 215 (259)
Q Consensus 174 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~ 215 (259)
.+++|+.|+++++ .++.+.... +..+++|+.|++++++
T Consensus 153 ~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 153 KLTNLQTLSLSTN-QLQSVPHGA---FDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TCTTCCEEECCSS-CCSCCCTTT---TTTCTTCCEEECCSCC
T ss_pred cCcCCCEEECCCC-cCCccCHHH---HhCCCCCCEEEeeCCc
Confidence 3455555555554 344333222 2334555555555544
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.17 E-value=1.7e-11 Score=102.59 Aligned_cols=204 Identities=11% Similarity=0.045 Sum_probs=128.8
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccc------------cccccCCCCcccEeecccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSV------------RRVRCEVFPLLESLDLINL 89 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~------------~~~~~~~~~~L~~L~l~~~ 89 (259)
+++|+.|++.++. +.... . +..+++|+.|+++++. +..+.... .......+++|+.|+++++
T Consensus 57 l~~L~~L~Ls~n~-l~~~~---~-~~~l~~L~~L~Ls~n~-l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N 130 (317)
T 3o53_A 57 FTKLELLNLSSNV-LYETL---D-LESLSTLRTLDLNNNY-VQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN 130 (317)
T ss_dssp CTTCCEEECTTSC-CEEEE---E-ETTCTTCCEEECCSSE-EEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSS
T ss_pred CCcCCEEECCCCc-CCcch---h-hhhcCCCCEEECcCCc-cccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCC
Confidence 6889999998874 33332 1 5588999999999874 33220000 0002234567777777665
Q ss_pred ccccccccccccCcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccC----Cccc
Q 048518 90 TNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQ----GFTE 165 (259)
Q Consensus 90 ~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~----~~~~ 165 (259)
. +..+... .+..+++|+.|+++++ .++...+..+...+++|+.|+++++. +..++. ...++.+.. ++..
T Consensus 131 ~-l~~~~~~---~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~l~~L~~L~Ls~N~l 203 (317)
T 3o53_A 131 K-ITMLRDL---DEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSNKL 203 (317)
T ss_dssp C-CCSGGGB---CTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSSCC
T ss_pred C-CCCccch---hhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCc-Cccccc-ccccccCCEEECCCCcC
Confidence 2 2222110 2456889999999887 56666555555678999999998865 334322 122333321 2333
Q ss_pred cccCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCC-CccCChhHHhhcCCccEEEEecccccc
Q 048518 166 INAEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPL-KYMFSYSMANSLGQLRHLEIINCWSME 244 (259)
Q Consensus 166 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l-~~~~~~~~~~~l~~L~~L~l~~c~~l~ 244 (259)
...++.+..+++|+.|+++++ .++.++.. +..+++|+.|++++++.. ..++ .....++.|+.+++.++..++
T Consensus 204 ~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~----~~~l~~L~~L~l~~N~~~~~~~~--~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 204 AFMGPEFQSAAGVTWISLRNN-KLVLIEKA----LRFSQNLEHFDLRGNGFHCGTLR--DFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp CEECGGGGGGTTCSEEECTTS-CCCEECTT----CCCCTTCCEEECTTCCCBHHHHH--HHHHTCHHHHHHHHHHHHHHH
T ss_pred CcchhhhcccCcccEEECcCC-cccchhhH----hhcCCCCCEEEccCCCccCcCHH--HHHhccccceEEECCCchhcc
Confidence 334445677899999999998 77776543 446799999999998864 2232 356677888888887666554
Q ss_pred c
Q 048518 245 G 245 (259)
Q Consensus 245 ~ 245 (259)
.
T Consensus 277 ~ 277 (317)
T 3o53_A 277 G 277 (317)
T ss_dssp S
T ss_pred C
Confidence 3
No 57
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.16 E-value=1.9e-10 Score=93.94 Aligned_cols=158 Identities=17% Similarity=0.107 Sum_probs=110.6
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
+++|++|++.++ .++.++.. . +..+++|+.|+++++. +..+ +.. ....+++|+.|+++++. +..+.. .
T Consensus 60 l~~L~~L~l~~n-~l~~i~~~-~-~~~l~~L~~L~l~~n~-l~~~-~~~---~~~~l~~L~~L~l~~n~-l~~~~~---~ 127 (270)
T 2o6q_A 60 LTKLRLLYLNDN-KLQTLPAG-I-FKELKNLETLWVTDNK-LQAL-PIG---VFDQLVNLAELRLDRNQ-LKSLPP---R 127 (270)
T ss_dssp CTTCCEEECCSS-CCSCCCTT-T-TSSCTTCCEEECCSSC-CCCC-CTT---TTTTCSSCCEEECCSSC-CCCCCT---T
T ss_pred CCCCCEEECCCC-ccCeeChh-h-hcCCCCCCEEECCCCc-CCcC-CHh---HcccccCCCEEECCCCc-cCeeCH---H
Confidence 688999999887 34444332 1 4579999999999884 4433 211 33457899999998853 333311 1
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEE
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEEL 181 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L 181 (259)
.+..+++|++|+++++ .++.+ +...+..+++|+.|+++++. +..++.. .+..+++|+.|
T Consensus 128 ~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~------------------~~~~l~~L~~L 186 (270)
T 2o6q_A 128 VFDSLTKLTYLSLGYN-ELQSL-PKGVFDKLTSLKELRLYNNQ-LKRVPEG------------------AFDKLTELKTL 186 (270)
T ss_dssp TTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CSCCCTT------------------TTTTCTTCCEE
T ss_pred HhCcCcCCCEEECCCC-cCCcc-CHhHccCCcccceeEecCCc-CcEeChh------------------HhccCCCcCEE
Confidence 2467899999999998 56666 44445689999999998863 3332211 13457999999
Q ss_pred eeCCCccccccCcCCCcccccCCCccEEEEecCCC
Q 048518 182 ELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCP 216 (259)
Q Consensus 182 ~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~ 216 (259)
+++++ .++.+.... +..+++|+.|++++++.
T Consensus 187 ~L~~N-~l~~~~~~~---~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 187 KLDNN-QLKRVPEGA---FDSLEKLKMLQLQENPW 217 (270)
T ss_dssp ECCSS-CCSCCCTTT---TTTCTTCCEEECCSSCB
T ss_pred ECCCC-cCCcCCHHH---hccccCCCEEEecCCCe
Confidence 99998 777765543 44689999999988774
No 58
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.16 E-value=2.6e-10 Score=95.92 Aligned_cols=191 Identities=15% Similarity=0.123 Sum_probs=114.0
Q ss_pred ccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeeccccccccccccccccCc
Q 048518 24 RTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLRED 103 (259)
Q Consensus 24 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 103 (259)
+++.+++.++ +++.++.. -.++|+.|+++++. +..+.+. ....+++|+.|+++++. +..+.. ..+
T Consensus 34 ~l~~l~~~~~-~l~~ip~~-----~~~~l~~L~l~~n~-i~~~~~~----~~~~l~~L~~L~L~~n~-l~~~~~---~~~ 98 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKE-----ISPDTTLLDLQNND-ISELRKD----DFKGLQHLYALVLVNNK-ISKIHE---KAF 98 (332)
T ss_dssp ETTEEECCSS-CCSSCCSC-----CCTTCCEEECCSSC-CCEECTT----TTTTCTTCCEEECCSSC-CCEECG---GGS
T ss_pred cCCEEECCCC-CccccCCC-----CCCCCeEEECCCCc-CCccCHh----HhhCCCCCcEEECCCCc-cCccCH---hHh
Confidence 6777777666 34444322 35799999999884 4444121 34568999999999873 333311 135
Q ss_pred ccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceeccc-CCCCCcccC---Cccccc---cC-CCcccc
Q 048518 104 QSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGP-DMEKPTTTQ---GFTEIN---AE-DDQVTF 175 (259)
Q Consensus 104 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~l~~---~~~~~~---~~-~~~~~l 175 (259)
..+++|++|+++++ .++.+ |... .++|+.|++.++.- ..++.. -..++.+.. ..+.+. .. .....+
T Consensus 99 ~~l~~L~~L~L~~n-~l~~l-~~~~---~~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 172 (332)
T 2ft3_A 99 SPLRKLQKLYISKN-HLVEI-PPNL---PSSLVELRIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172 (332)
T ss_dssp TTCTTCCEEECCSS-CCCSC-CSSC---CTTCCEEECCSSCC-CCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC
T ss_pred hCcCCCCEEECCCC-cCCcc-Cccc---cccCCEEECCCCcc-CccCHhHhCCCccCCEEECCCCccccCCCCcccccCC
Confidence 78899999999987 46655 4332 38999999988643 333221 222332221 111111 11 111111
Q ss_pred --------------------CCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEE
Q 048518 176 --------------------PRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHL 235 (259)
Q Consensus 176 --------------------~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 235 (259)
++|+.|+++++ .++.+.... +..+++|+.|+++++. ++.++.. ....+++|++|
T Consensus 173 ~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n-~i~~~~~~~---l~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L 246 (332)
T 2ft3_A 173 KLNYLRISEAKLTGIPKDLPETLNELHLDHN-KIQAIELED---LLRYSKLYRLGLGHNQ-IRMIENG-SLSFLPTLREL 246 (332)
T ss_dssp CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSS-CCCCCCTTS---STTCTTCSCCBCCSSC-CCCCCTT-GGGGCTTCCEE
T ss_pred ccCEEECcCCCCCccCccccCCCCEEECCCC-cCCccCHHH---hcCCCCCCEEECCCCc-CCcCChh-HhhCCCCCCEE
Confidence 45566666555 344433222 4567899999998875 5555442 35678999999
Q ss_pred EEeccc
Q 048518 236 EIINCW 241 (259)
Q Consensus 236 ~l~~c~ 241 (259)
++++|.
T Consensus 247 ~L~~N~ 252 (332)
T 2ft3_A 247 HLDNNK 252 (332)
T ss_dssp ECCSSC
T ss_pred ECCCCc
Confidence 998873
No 59
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.16 E-value=1.6e-10 Score=104.89 Aligned_cols=170 Identities=14% Similarity=0.163 Sum_probs=120.7
Q ss_pred HHhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeeccccccccccccccc
Q 048518 21 LLKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQL 100 (259)
Q Consensus 21 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 100 (259)
-+++|+.|.+.++. +..+ ..+..+++|+.|++++|. +..+ + ....+++|+.|+++++ .+..+
T Consensus 41 ~L~~L~~L~l~~n~-i~~l----~~l~~l~~L~~L~Ls~N~-l~~~-~-----~l~~l~~L~~L~Ls~N-~l~~l----- 102 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSV----QGIQYLPNVTKLFLNGNK-LTDI-K-----PLTNLKNLGWLFLDEN-KIKDL----- 102 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCC----TTGGGCTTCCEEECTTSC-CCCC-G-----GGGGCTTCCEEECCSS-CCCCC-----
T ss_pred cCCCCCEEECcCCC-CCCC----hHHccCCCCCEEEeeCCC-CCCC-h-----hhccCCCCCEEECcCC-CCCCC-----
Confidence 37889999888773 4444 226689999999999884 4433 1 2456899999999886 33332
Q ss_pred cCcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCE
Q 048518 101 REDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEE 180 (259)
Q Consensus 101 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~ 180 (259)
+.+..+++|+.|+++++ .+..+ + .+..+++|+.|++++|. +..+ ..+..+++|+.
T Consensus 103 ~~l~~l~~L~~L~Ls~N-~l~~l-~--~l~~l~~L~~L~Ls~N~-l~~l--------------------~~l~~l~~L~~ 157 (605)
T 1m9s_A 103 SSLKDLKKLKSLSLEHN-GISDI-N--GLVHLPQLESLYLGNNK-ITDI--------------------TVLSRLTKLDT 157 (605)
T ss_dssp TTSTTCTTCCEEECTTS-CCCCC-G--GGGGCTTCSEEECCSSC-CCCC--------------------GGGGSCTTCSE
T ss_pred hhhccCCCCCEEEecCC-CCCCC-c--cccCCCccCEEECCCCc-cCCc--------------------hhhcccCCCCE
Confidence 33678899999999988 45544 3 24678999999998873 3222 12446788999
Q ss_pred EeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccccc
Q 048518 181 LELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWSM 243 (259)
Q Consensus 181 L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 243 (259)
|+++++ .++.+.. +..+++|+.|++++|. ++.++ .+..+++|+.|++.+|+..
T Consensus 158 L~Ls~N-~l~~~~~-----l~~l~~L~~L~Ls~N~-i~~l~---~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 158 LSLEDN-QISDIVP-----LAGLTKLQNLYLSKNH-ISDLR---ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp EECCSS-CCCCCGG-----GTTCTTCCEEECCSSC-CCBCG---GGTTCTTCSEEECCSEEEE
T ss_pred EECcCC-cCCCchh-----hccCCCCCEEECcCCC-CCCCh---HHccCCCCCEEEccCCcCc
Confidence 999988 5555433 3467899999998874 56654 3567889999999887543
No 60
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.15 E-value=2.5e-10 Score=102.25 Aligned_cols=116 Identities=23% Similarity=0.213 Sum_probs=70.3
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
++++++|++.++. ++..... . +.++++|+.|+++++. +..+.+. ....+++|+.|+++++. +......
T Consensus 25 ~~~L~~L~Ls~n~-l~~~~~~-~-~~~l~~L~~L~Ls~n~-i~~~~~~----~~~~l~~L~~L~Ls~n~-l~~~~~~--- 92 (549)
T 2z81_A 25 TAAMKSLDLSFNK-ITYIGHG-D-LRACANLQVLILKSSR-INTIEGD----AFYSLGSLEHLDLSDNH-LSSLSSS--- 92 (549)
T ss_dssp CTTCCEEECCSSC-CCEECSS-T-TSSCTTCCEEECTTSC-CCEECTT----TTTTCTTCCEEECTTSC-CCSCCHH---
T ss_pred CCCccEEECcCCc-cCccChh-h-hhcCCcccEEECCCCC-cCccChh----hccccccCCEEECCCCc-cCccCHH---
Confidence 4678888888874 4444322 2 5578888888888873 4433121 23457788888887763 3322111
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceec
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMI 150 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 150 (259)
.+..+++|++|+++++. ++.+.....+.++++|+.|+++++..+..++
T Consensus 93 ~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 140 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140 (549)
T ss_dssp HHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred HhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccC
Confidence 14567788888887763 4332111223567888888888876555543
No 61
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.14 E-value=9.7e-10 Score=103.66 Aligned_cols=113 Identities=15% Similarity=0.103 Sum_probs=63.1
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
+++|++|++.++.....+... . +.++++|+.|+++++. +..+.+. ....+++|+.|+++++. +........
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~-~-f~~L~~L~~L~Ls~N~-l~~~~p~----~~~~l~~L~~L~Ls~n~-l~~~~~~~~- 117 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKE-A-FRNLPNLRILDLGSSK-IYFLHPD----AFQGLFHLFELRLYFCG-LSDAVLKDG- 117 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTT-T-TSSCTTCCEEECTTCC-CCEECTT----SSCSCSSCCCEECTTCC-CSSCCSTTC-
T ss_pred cccCeEEeCCCCCCccccCHH-H-hcCCCCCCEEECCCCc-CcccCHh----HccCCcccCEeeCcCCC-CCcccccCc-
Confidence 566777777776544444222 1 4567777777777764 3322111 23456777777777653 222110000
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEecc
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCN 144 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 144 (259)
.+..+++|++|+++++. ++...+...+.++++|+.|+++++.
T Consensus 118 ~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 118 YFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp CCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred cccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCc
Confidence 14567788888887763 4444333334677788888777753
No 62
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.14 E-value=1.1e-10 Score=106.75 Aligned_cols=206 Identities=9% Similarity=0.085 Sum_probs=115.9
Q ss_pred Hhccceeeeccccccce------------------eccccCCCC--CCCCccEEEEecCcCcceecccccccccCCCCcc
Q 048518 22 LKRTEDLRLYSLTGVQN------------------VVHELDDGE--GFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLL 81 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~------------------~~~~~~~~~--~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L 81 (259)
+++|++|++.++. +.. ++.. +. ++++|+.|++++|.....+ +. ....+++|
T Consensus 205 l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~---l~~~~l~~L~~L~L~~n~l~~~~-p~----~l~~l~~L 275 (636)
T 4eco_A 205 LTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTED---LKWDNLKDLTDVEVYNCPNLTKL-PT----FLKALPEM 275 (636)
T ss_dssp CTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSC---CCGGGCTTCCEEEEECCTTCSSC-CT----TTTTCSSC
T ss_pred ccCCCEEECcCCc-cccccccccccccccchhcccCchh---hhhcccCCCCEEEecCCcCCccC-hH----HHhcCCCC
Confidence 7889999998885 444 3332 55 8999999999999655544 22 34567899
Q ss_pred cEeeccccccccc-ccccccc---CcccCCCccEEEEecCCCceEecch-hhhhhcCCCcEEEEEeccCcceecccCCCC
Q 048518 82 ESLDLINLTNLET-ICYSQLR---EDQSFSNLRIIYVYSCPKLKYLFSF-SMAKNLLGLQKVEVVNCNKLKMMIGPDMEK 156 (259)
Q Consensus 82 ~~L~l~~~~~l~~-~~~~~~~---~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 156 (259)
+.|+++++..+.. .....+. ....+++|++|+++++ .++.+ |. ..+.++++|+.|+++++.-...++ .-+.+
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~i-p~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l 352 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTF-PVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE 352 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSC-CCHHHHTTCTTCCEEECCSCCCEEECC-CCEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCcc-CchhhhccCCCCCEEeCcCCcCccchh-hhCCC
Confidence 9999988763443 1100000 0123478888888877 45544 43 234577888888887765433444 22222
Q ss_pred CcccC----CccccccCCCccccCC-cCEEeeCCCccccccCcCCC----------------------cccc-------c
Q 048518 157 PTTTQ----GFTEINAEDDQVTFPR-LEELELVSLTNIKKLWPDQF----------------------QGMY-------C 202 (259)
Q Consensus 157 ~~l~~----~~~~~~~~~~~~~l~~-L~~L~l~~c~~l~~l~~~~~----------------------~~~~-------~ 202 (259)
+.+.. ++.....+..+..+++ |+.|+++++ .++.++.... ..+. .
T Consensus 353 ~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~ 431 (636)
T 4eco_A 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431 (636)
T ss_dssp EEESEEECCSSEEEECCTTSEEECTTCCEEECCSS-CCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCC
T ss_pred CCCCEEECCCCccccccHhhhhhcccCcEEEccCC-cCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccccc
Confidence 22221 1111122233445555 666666555 2333221100 0011 3
Q ss_pred CCCccEEEEecCCCCCccCChhHHhhcCCccEEEEecccc
Q 048518 203 CQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWS 242 (259)
Q Consensus 203 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 242 (259)
+++|+.|+++++. ++.+|. .....+++|++|++++|..
T Consensus 432 ~~~L~~L~Ls~N~-l~~lp~-~~~~~l~~L~~L~Ls~N~l 469 (636)
T 4eco_A 432 GINVSSINLSNNQ-ISKFPK-ELFSTGSPLSSINLMGNML 469 (636)
T ss_dssp CCCEEEEECCSSC-CCSCCT-HHHHTTCCCSEEECCSSCC
T ss_pred CCCCCEEECcCCc-cCcCCH-HHHccCCCCCEEECCCCCC
Confidence 4577777777764 445554 2345578888888887753
No 63
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.14 E-value=2.9e-10 Score=100.10 Aligned_cols=187 Identities=16% Similarity=0.098 Sum_probs=118.3
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
+++|+.|++.++. +..+ ..+..+++|+.|++++|.. ... . ....+++|+.|+++++. +..+ +
T Consensus 176 l~~L~~L~l~~n~-l~~~----~~l~~l~~L~~L~l~~n~l-~~~-~-----~~~~l~~L~~L~l~~n~-l~~~-----~ 237 (466)
T 1o6v_A 176 LTTLERLDISSNK-VSDI----SVLAKLTNLESLIATNNQI-SDI-T-----PLGILTNLDELSLNGNQ-LKDI-----G 237 (466)
T ss_dssp CTTCCEEECCSSC-CCCC----GGGGGCTTCSEEECCSSCC-CCC-G-----GGGGCTTCCEEECCSSC-CCCC-----G
T ss_pred CCCCCEEECcCCc-CCCC----hhhccCCCCCEEEecCCcc-ccc-c-----cccccCCCCEEECCCCC-cccc-----h
Confidence 6788888888774 4433 1245788899999988743 322 1 23347788888887753 3322 2
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccC---CccccccCCCccccCCc
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQ---GFTEINAEDDQVTFPRL 178 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~---~~~~~~~~~~~~~l~~L 178 (259)
.+..+++|+.|+++++ .++...+ ...+++|+.|++++|.- ..++. ...++.+.. ..+.+...+....+++|
T Consensus 238 ~l~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L 311 (466)
T 1o6v_A 238 TLASLTNLTDLDLANN-QISNLAP---LSGLTKLTELKLGANQI-SNISP-LAGLTALTNLELNENQLEDISPISNLKNL 311 (466)
T ss_dssp GGGGCTTCSEEECCSS-CCCCCGG---GTTCTTCSEEECCSSCC-CCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTC
T ss_pred hhhcCCCCCEEECCCC-ccccchh---hhcCCCCCEEECCCCcc-Ccccc-ccCCCccCeEEcCCCcccCchhhcCCCCC
Confidence 2456778888888776 3444423 35677888888777643 22221 222222221 22233333346678999
Q ss_pred CEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEecccc
Q 048518 179 EELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWS 242 (259)
Q Consensus 179 ~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 242 (259)
+.|+++++ .++.+.. ...+++|+.|++++|+ ++.++ ....+++|++|++++|+.
T Consensus 312 ~~L~L~~n-~l~~~~~-----~~~l~~L~~L~l~~n~-l~~~~---~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 312 TYLTLYFN-NISDISP-----VSSLTKLQRLFFYNNK-VSDVS---SLANLTNINWLSAGHNQI 365 (466)
T ss_dssp SEEECCSS-CCSCCGG-----GGGCTTCCEEECCSSC-CCCCG---GGTTCTTCCEEECCSSCC
T ss_pred CEEECcCC-cCCCchh-----hccCccCCEeECCCCc-cCCch---hhccCCCCCEEeCCCCcc
Confidence 99999998 5555432 3468999999999884 56553 356789999999998854
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.13 E-value=8.1e-11 Score=98.27 Aligned_cols=201 Identities=14% Similarity=0.066 Sum_probs=104.7
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceeccccccc-ccCCCCcccEeeccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRV-RCEVFPLLESLDLINLTNLETICYSQL 100 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~ 100 (259)
+++|++|++.++.-....+.... ...+++|+.|+++++. +... +..... .....++|+.|+++++. +..+..
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~-~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~--- 166 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLL-EATGPDLNILNLRNVS-WATR-DAWLAELQQWLKPGLKVLSIAQAH-SLNFSC--- 166 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSS-SCCSCCCSEEEEESCB-CSSS-SSHHHHHHTTCCTTCCEEEEESCS-CCCCCT---
T ss_pred cCCccEEEccCCcccchhHHHHH-HhcCCCccEEEccCCC-Ccch-hHHHHHHHHhhcCCCcEEEeeCCC-CccchH---
Confidence 68899999988853333433321 2578899999998874 3322 111000 01112677777776653 222211
Q ss_pred cCcccCCCccEEEEecCCCceEe-cchh-hhhhcCCCcEEEEEeccCccee---cccC----CCCCcccCCcccccc-C-
Q 048518 101 REDQSFSNLRIIYVYSCPKLKYL-FSFS-MAKNLLGLQKVEVVNCNKLKMM---IGPD----MEKPTTTQGFTEINA-E- 169 (259)
Q Consensus 101 ~~~~~~~~L~~L~l~~c~~l~~~-~~~~-~~~~l~~L~~L~l~~c~~l~~~---~~~~----~~~~~l~~~~~~~~~-~- 169 (259)
..+..+++|++|+++++.-.... .+.. ....+++|+.|+++++. +..+ +... ..+..+.-..+.+.. .
T Consensus 167 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccc
Confidence 12456667777777666422211 0111 11456667777766653 2211 1000 111111111111111 1
Q ss_pred -CCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccc
Q 048518 170 -DDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCW 241 (259)
Q Consensus 170 -~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 241 (259)
.....+++|+.|+++++ .++.++... .++|++|+++++. ++.+|. ...+++|++|++++++
T Consensus 246 ~~~~~~l~~L~~L~Ls~N-~l~~ip~~~------~~~L~~L~Ls~N~-l~~~p~---~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 246 APSCDWPSQLNSLNLSFT-GLKQVPKGL------PAKLSVLDLSYNR-LDRNPS---PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CSCCCCCTTCCEEECTTS-CCSSCCSSC------CSEEEEEECCSSC-CCSCCC---TTTSCEEEEEECTTCT
T ss_pred hhhhhhcCCCCEEECCCC-ccChhhhhc------cCCceEEECCCCC-CCCChh---HhhCCCCCEEeccCCC
Confidence 12334678888888887 566554322 1688888888764 566654 4567888888887764
No 65
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.11 E-value=1e-10 Score=97.49 Aligned_cols=202 Identities=12% Similarity=0.088 Sum_probs=104.5
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
+++|++|++.++.-....+.... ...+++|+.|+++++...... ..........+++|+.|+++++.- ..... .
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~---~ 163 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPL-EATGLALSSLRLRNVSWATGR-SWLAELQQWLKPGLKVLSIAQAHS-PAFSC---E 163 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSS-SCCCBCCSSCEEESCCCSSTT-SSHHHHHTTBCSCCCEEEEECCSS-CCCCT---T
T ss_pred cCceeEEEeeCCEeccchhhhhh-hccCCCCCEEEeecccccchh-hhhHHHHhhhccCCCEEEeeCCCc-chhhH---H
Confidence 46799999988854333332210 057888999999887533211 100000122467777777776532 22211 1
Q ss_pred CcccCCCccEEEEecCCCceE--ecchhhhhhcCCCcEEEEEeccCcceeccc-------CCCCCcccCCccccc-c-CC
Q 048518 102 EDQSFSNLRIIYVYSCPKLKY--LFSFSMAKNLLGLQKVEVVNCNKLKMMIGP-------DMEKPTTTQGFTEIN-A-ED 170 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~--~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-------~~~~~~l~~~~~~~~-~-~~ 170 (259)
.+..+++|++|+++++.-... +.+......+++|+.|++++|.- ..++.. -..+..+.-..+.+. . +.
T Consensus 164 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~ 242 (310)
T 4glp_A 164 QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP 242 (310)
T ss_dssp SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence 244667777777777642211 11111123566777777766532 221110 011111111111111 1 11
Q ss_pred Ccccc---CCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccc
Q 048518 171 DQVTF---PRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCW 241 (259)
Q Consensus 171 ~~~~l---~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 241 (259)
....+ ++|+.|+++++ .++.++... +++|+.|+++++. ++.+|. ...+++|++|++++++
T Consensus 243 ~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~------~~~L~~L~Ls~N~-l~~~~~---~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 243 SAPRCMWSSALNSLNLSFA-GLEQVPKGL------PAKLRVLDLSSNR-LNRAPQ---PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCSSCCCCTTCCCEECCSS-CCCSCCSCC------CSCCSCEECCSCC-CCSCCC---TTSCCCCSCEECSSTT
T ss_pred hHHhccCcCcCCEEECCCC-CCCchhhhh------cCCCCEEECCCCc-CCCCch---hhhCCCccEEECcCCC
Confidence 22223 67888888777 566553322 3688888887765 555543 3566788888887664
No 66
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.11 E-value=1.3e-11 Score=111.53 Aligned_cols=206 Identities=14% Similarity=0.036 Sum_probs=105.3
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeeccc----------ccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLIN----------LTN 91 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~----------~~~ 91 (259)
+++|++|++.+|. +........ +..+++|+.|++.++..-..+ . .....+++|+.|++++ |..
T Consensus 292 ~~~L~~L~Ls~~~-l~~~~~~~~-~~~~~~L~~L~L~~~~~~~~l-~----~~~~~~~~L~~L~L~~g~~~~~~~~~~~~ 364 (592)
T 3ogk_B 292 AAQIRKLDLLYAL-LETEDHCTL-IQKCPNLEVLETRNVIGDRGL-E----VLAQYCKQLKRLRIERGADEQGMEDEEGL 364 (592)
T ss_dssp GGGCCEEEETTCC-CCHHHHHHH-HTTCTTCCEEEEEGGGHHHHH-H----HHHHHCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred cCCCcEEecCCCc-CCHHHHHHH-HHhCcCCCEEeccCccCHHHH-H----HHHHhCCCCCEEEeecCccccccccccCc
Confidence 5677777777765 322211101 346777777777633111110 0 0122356777777774 544
Q ss_pred ccccccccccCcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEe---ccCcceeccc------CCCCCcccC-
Q 048518 92 LETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVN---CNKLKMMIGP------DMEKPTTTQ- 161 (259)
Q Consensus 92 l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~---c~~l~~~~~~------~~~~~~l~~- 161 (259)
+.......+ ...+++|++|++ +|..+++..+..+..++++|+.|++.+ |+.+...+.. ..+.+.+..
T Consensus 365 ~~~~~~~~l--~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L 441 (592)
T 3ogk_B 365 VSQRGLIAL--AQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRF 441 (592)
T ss_dssp CCHHHHHHH--HHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred cCHHHHHHH--HhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEE
Confidence 443211111 234677777777 344555443444444577777777764 3334332110 000111100
Q ss_pred ---Cccc-cc--cCCC-ccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccE
Q 048518 162 ---GFTE-IN--AEDD-QVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRH 234 (259)
Q Consensus 162 ---~~~~-~~--~~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~ 234 (259)
.|.. +. .+.. ...+++|+.|++++| .++...... ....+++|++|++++|+ ++......+...+++|++
T Consensus 442 ~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~--~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~ 517 (592)
T 3ogk_B 442 AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLME--FSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRY 517 (592)
T ss_dssp EEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHH--HHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCE
T ss_pred EEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHH--HHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCe
Confidence 0000 00 0000 123677888888776 333211111 13467999999999999 665433345678899999
Q ss_pred EEEeccc
Q 048518 235 LEIINCW 241 (259)
Q Consensus 235 L~l~~c~ 241 (259)
|++++|+
T Consensus 518 L~ls~n~ 524 (592)
T 3ogk_B 518 LWVQGYR 524 (592)
T ss_dssp EEEESCB
T ss_pred eECcCCc
Confidence 9999997
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.11 E-value=5.9e-10 Score=92.90 Aligned_cols=164 Identities=18% Similarity=0.242 Sum_probs=112.6
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
+++|+.|++.++ .+..+.. +..+++|+.|+++++. +..+ + ....+++|+.|+++++. +..+ +
T Consensus 62 l~~L~~L~L~~n-~i~~~~~----~~~l~~L~~L~L~~n~-l~~~-~-----~~~~l~~L~~L~l~~n~-l~~~-----~ 123 (308)
T 1h6u_A 62 LNNLIGLELKDN-QITDLAP----LKNLTKITELELSGNP-LKNV-S-----AIAGLQSIKTLDLTSTQ-ITDV-----T 123 (308)
T ss_dssp CTTCCEEECCSS-CCCCCGG----GTTCCSCCEEECCSCC-CSCC-G-----GGTTCTTCCEEECTTSC-CCCC-----G
T ss_pred cCCCCEEEccCC-cCCCChh----HccCCCCCEEEccCCc-CCCc-h-----hhcCCCCCCEEECCCCC-CCCc-----h
Confidence 789999999887 4555432 5589999999999885 4433 2 34567899999998864 3333 2
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCccc---CCccccccCCCccccCCc
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTT---QGFTEINAEDDQVTFPRL 178 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~---~~~~~~~~~~~~~~l~~L 178 (259)
.+..+++|++|+++++ .++.+.+ ...+++|+.|++++|. +..++. ...++.+. -..+.++..+.+..+++|
T Consensus 124 ~l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L 197 (308)
T 1h6u_A 124 PLAGLSNLQVLYLDLN-QITNISP---LAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKADDNKISDISPLASLPNL 197 (308)
T ss_dssp GGTTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTC
T ss_pred hhcCCCCCCEEECCCC-ccCcCcc---ccCCCCccEEEccCCc-CCCChh-hcCCCCCCEEECCCCccCcChhhcCCCCC
Confidence 2567889999999887 4555533 4678899999998873 333332 22233222 233344444457788999
Q ss_pred CEEeeCCCccccccCcCCCcccccCCCccEEEEecCC
Q 048518 179 EELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCC 215 (259)
Q Consensus 179 ~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~ 215 (259)
+.|+++++ .++.+.. +..+++|+.|++++++
T Consensus 198 ~~L~L~~N-~l~~~~~-----l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 198 IEVHLKNN-QISDVSP-----LANTSNLFIVTLTNQT 228 (308)
T ss_dssp CEEECTTS-CCCBCGG-----GTTCTTCCEEEEEEEE
T ss_pred CEEEccCC-ccCcccc-----ccCCCCCCEEEccCCe
Confidence 99999998 6666542 4568999999999876
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.10 E-value=1.9e-11 Score=110.53 Aligned_cols=208 Identities=15% Similarity=0.160 Sum_probs=103.2
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
+++|++|++.++. +.+.....- ...+++|+.|++.+|..+... ........+++|+.|++++|. +.+.....++
T Consensus 104 ~~~L~~L~L~~~~-~~~~~~~~l-~~~~~~L~~L~L~~~~~~~~~---~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~ 177 (594)
T 2p1m_B 104 YTWLEEIRLKRMV-VTDDCLELI-AKSFKNFKVLVLSSCEGFSTD---GLAAIAATCRNLKELDLRESD-VDDVSGHWLS 177 (594)
T ss_dssp CTTCCEEEEESCB-CCHHHHHHH-HHHCTTCCEEEEESCEEEEHH---HHHHHHHHCTTCCEEECTTCE-EECCCGGGGG
T ss_pred CCCCCeEEeeCcE-EcHHHHHHH-HHhCCCCcEEeCCCcCCCCHH---HHHHHHHhCCCCCEEeCcCCc-cCCcchHHHH
Confidence 5677777777664 222211100 114677777777777544321 000012246778888877765 3332211122
Q ss_pred C-cccCCCccEEEEecCC-CceEecchhhhhhcCCCcEEEEEeccCcceecccCCCC---Cccc----------------
Q 048518 102 E-DQSFSNLRIIYVYSCP-KLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEK---PTTT---------------- 160 (259)
Q Consensus 102 ~-~~~~~~L~~L~l~~c~-~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~---~~l~---------------- 160 (259)
. ...+++|++|++++|. .++......+..++++|+.|++.+|..+..++...... ..+.
T Consensus 178 ~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 257 (594)
T 2p1m_B 178 HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL 257 (594)
T ss_dssp GSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH
T ss_pred HHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHH
Confidence 1 2356778888887764 22211122233456788888887763322211100000 0000
Q ss_pred ----CCcccc------------ccCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChh
Q 048518 161 ----QGFTEI------------NAEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYS 224 (259)
Q Consensus 161 ----~~~~~~------------~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 224 (259)
.+++.+ ........+++|+.|++++|. ++...... ....+++|++|++.+| +.......
T Consensus 258 ~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~--~~~~~~~L~~L~l~~~--~~~~~l~~ 332 (594)
T 2p1m_B 258 SVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVK--LLCQCPKLQRLWVLDY--IEDAGLEV 332 (594)
T ss_dssp HHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHH--HHTTCTTCCEEEEEGG--GHHHHHHH
T ss_pred HHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHH--HHhcCCCcCEEeCcCc--cCHHHHHH
Confidence 011100 011111246788888888885 44211110 1335788899998887 33322222
Q ss_pred HHhhcCCccEEEEecc
Q 048518 225 MANSLGQLRHLEIINC 240 (259)
Q Consensus 225 ~~~~l~~L~~L~l~~c 240 (259)
+...+++|++|++.+|
T Consensus 333 l~~~~~~L~~L~L~~~ 348 (594)
T 2p1m_B 333 LASTCKDLRELRVFPS 348 (594)
T ss_dssp HHHHCTTCCEEEEECS
T ss_pred HHHhCCCCCEEEEecC
Confidence 4456888999988554
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.10 E-value=3.2e-11 Score=109.00 Aligned_cols=211 Identities=16% Similarity=0.124 Sum_probs=121.2
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeeccccc-cccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLT-NLETICYSQL 100 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~ 100 (259)
+++|++|++.+|..+........ ..++++|++|++++|. +..............+++|+.|+++++. .+.......+
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l 206 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAI-AATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL 206 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHH-HHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHH-HHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHH
Confidence 79999999999976654211101 3368999999999986 3321011111123357899999999885 2211111111
Q ss_pred cCcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEec-------------------cCcceec-c---cCCCCC
Q 048518 101 REDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNC-------------------NKLKMMI-G---PDMEKP 157 (259)
Q Consensus 101 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c-------------------~~l~~~~-~---~~~~~~ 157 (259)
...+++|+.|++.+|..++.+ +. ....+++|+.|.+.++ ..++.+. . ....++
T Consensus 207 --~~~~~~L~~L~L~~~~~~~~l-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~ 282 (594)
T 2p1m_B 207 --VTRCPNLKSLKLNRAVPLEKL-AT-LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLP 282 (594)
T ss_dssp --HHHCTTCCEEECCTTSCHHHH-HH-HHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGG
T ss_pred --HHhCCCCcEEecCCCCcHHHH-HH-HHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHH
Confidence 245799999999999766653 33 3467888999876544 3333321 0 001111
Q ss_pred -------cccC----Ccccccc--CC-CccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEec--------CC
Q 048518 158 -------TTTQ----GFTEINA--ED-DQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTR--------CC 215 (259)
Q Consensus 158 -------~l~~----~~~~~~~--~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~--------c~ 215 (259)
.+.. ++. +.. +. -...+++|+.|++.+| +..-.... ....+++|++|++.+ |.
T Consensus 283 ~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~--l~~~~~~L~~L~L~~~~~~g~~~~~ 357 (594)
T 2p1m_B 283 AVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEV--LASTCKDLRELRVFPSEPFVMEPNV 357 (594)
T ss_dssp GGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHH--HHHHCTTCCEEEEECSCTTCSSCSS
T ss_pred HHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHH--HHHhCCCCCEEEEecCcccccccCC
Confidence 1110 111 111 11 1346799999999987 22111110 123579999999955 45
Q ss_pred CCCccCChhHHhhcCCccEEEEecccccc
Q 048518 216 PLKYMFSYSMANSLGQLRHLEIINCWSME 244 (259)
Q Consensus 216 ~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 244 (259)
.++......+...+++|++|.+ +|..+.
T Consensus 358 ~l~~~~l~~l~~~~~~L~~L~~-~~~~l~ 385 (594)
T 2p1m_B 358 ALTEQGLVSVSMGCPKLESVLY-FCRQMT 385 (594)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEE-EESCCC
T ss_pred CCCHHHHHHHHHhchhHHHHHH-hcCCcC
Confidence 5555433334566899999965 444443
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.09 E-value=6.6e-10 Score=90.93 Aligned_cols=181 Identities=18% Similarity=0.188 Sum_probs=115.7
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
.+++++|++.++ .++.+... . +.++++|+.|+++++ .+..+.+. ....+++|+.|+++++. +..+.. .
T Consensus 27 ~~~l~~L~ls~n-~l~~~~~~-~-~~~l~~L~~L~l~~n-~l~~~~~~----~~~~l~~L~~L~L~~n~-l~~~~~---~ 94 (276)
T 2z62_A 27 PFSTKNLDLSFN-PLRHLGSY-S-FFSFPELQVLDLSRC-EIQTIEDG----AYQSLSHLSTLILTGNP-IQSLAL---G 94 (276)
T ss_dssp CTTCCEEECTTC-CCCEECTT-T-TTTCTTCSEEECTTC-CCCEECTT----TTTTCTTCCEEECTTCC-CCEECT---T
T ss_pred CCCccEEECCCC-cccccCHh-H-hccccCCcEEECCCC-cCCccCHH----HccCCcCCCEEECCCCc-cCccCh---h
Confidence 356888998877 45555332 2 567889999999988 44443111 24457889999998763 332211 1
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEE
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEEL 181 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L 181 (259)
.+..+++|++|++.++ .++.+.+. ....+++|+.|+++++.-. .+. .+..+..+++|+.|
T Consensus 95 ~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~l~-~~~-----------------l~~~~~~l~~L~~L 154 (276)
T 2z62_A 95 AFSGLSSLQKLVAVET-NLASLENF-PIGHLKTLKELNVAHNLIQ-SFK-----------------LPEYFSNLTNLEHL 154 (276)
T ss_dssp TTTTCTTCCEEECTTS-CCCCSTTC-CCTTCTTCCEEECCSSCCC-CCC-----------------CCGGGGGCTTCCEE
T ss_pred hhcCCccccEEECCCC-CccccCch-hcccCCCCCEEECcCCccc-eec-----------------CchhhccCCCCCEE
Confidence 2567888999999887 45544232 2457888999988876432 110 01134568999999
Q ss_pred eeCCCccccccCcCCCcccccCCCcc----EEEEecCCCCCccCChhHHhhcCCccEEEEeccc
Q 048518 182 ELVSLTNIKKLWPDQFQGMYCCQNLT----KVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCW 241 (259)
Q Consensus 182 ~l~~c~~l~~l~~~~~~~~~~~~~L~----~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 241 (259)
+++++ .++.+.... +..+++|+ .|+++++. ++.++.. .....+|++|+++++.
T Consensus 155 ~Ls~N-~l~~~~~~~---~~~l~~L~~l~l~L~ls~n~-l~~~~~~--~~~~~~L~~L~L~~n~ 211 (276)
T 2z62_A 155 DLSSN-KIQSIYCTD---LRVLHQMPLLNLSLDLSLNP-MNFIQPG--AFKEIRLKELALDTNQ 211 (276)
T ss_dssp ECCSS-CCCEECGGG---GHHHHTCTTCCEEEECCSSC-CCEECTT--SSCSCCEEEEECCSSC
T ss_pred ECCCC-CCCcCCHHH---hhhhhhccccceeeecCCCc-ccccCcc--ccCCCcccEEECCCCc
Confidence 99998 666665443 22344444 88888865 5666552 2334589999999875
No 71
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.08 E-value=8.2e-10 Score=98.37 Aligned_cols=158 Identities=15% Similarity=0.111 Sum_probs=87.4
Q ss_pred CCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc-CcccCCCccEEEEecCCCceEecch
Q 048518 48 GFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR-EDQSFSNLRIIYVYSCPKLKYLFSF 126 (259)
Q Consensus 48 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~ 126 (259)
.+++|+.|+++++...... +. ....+++|+.|+++++. +..+. .+| .+..+++|+.|+++++. ++...|.
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~-~~----~~~~l~~L~~L~L~~N~-l~~l~--~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~ 392 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTV-FE----NCGHLTELETLILQMNQ-LKELS--KIAEMTTQMKSLQQLDISQNS-VSYDEKK 392 (520)
T ss_dssp SCCCCCEEECCSSCCCTTT-TT----TCCCCSSCCEEECCSSC-CCBHH--HHHHHHTTCTTCCEEECCSSC-CBCCGGG
T ss_pred hCCcccEEEeECCccChhh-hh----hhccCCCCCEEEccCCc-cCccc--cchHHHhhCCCCCEEECCCCc-CCccccc
Confidence 5566666666655322211 11 22345566666665542 11110 001 13455666666666652 3331133
Q ss_pred hhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCcccc-CCcCEEeeCCCccccccCcCCCcccccCCC
Q 048518 127 SMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTF-PRLEELELVSLTNIKKLWPDQFQGMYCCQN 205 (259)
Q Consensus 127 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~ 205 (259)
..+..+++|+.|++++|.-...++ ..+ ++|+.|+++++ .++.++.. +..+++
T Consensus 393 ~~~~~l~~L~~L~Ls~N~l~~~~~----------------------~~l~~~L~~L~Ls~N-~l~~ip~~----~~~l~~ 445 (520)
T 2z7x_B 393 GDCSWTKSLLSLNMSSNILTDTIF----------------------RCLPPRIKVLDLHSN-KIKSIPKQ----VVKLEA 445 (520)
T ss_dssp CSCCCCTTCCEEECCSSCCCGGGG----------------------GSCCTTCCEEECCSS-CCCCCCGG----GGGCTT
T ss_pred chhccCccCCEEECcCCCCCcchh----------------------hhhcccCCEEECCCC-cccccchh----hhcCCC
Confidence 223445666666666553222211 112 68999999988 66665443 336889
Q ss_pred ccEEEEecCCCCCccCChhHHhhcCCccEEEEeccccc
Q 048518 206 LTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWSM 243 (259)
Q Consensus 206 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 243 (259)
|+.|+++++. ++.+|.. ....+++|++|++++++--
T Consensus 446 L~~L~L~~N~-l~~l~~~-~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 446 LQELNVASNQ-LKSVPDG-IFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSCBC
T ss_pred CCEEECCCCc-CCccCHH-HhccCCcccEEECcCCCCc
Confidence 9999998874 6777663 3567889999999887643
No 72
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.08 E-value=1e-09 Score=88.62 Aligned_cols=177 Identities=14% Similarity=0.133 Sum_probs=120.4
Q ss_pred ccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeeccccccccccccccccCc
Q 048518 24 RTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLRED 103 (259)
Q Consensus 24 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 103 (259)
+.+.+++.+. +++.++.. -.++|+.|+++++. +..+.+. ....+++|+.|+++++ .+..+... .+
T Consensus 15 ~~~~l~~~~~-~l~~~p~~-----~~~~l~~L~L~~n~-l~~~~~~----~~~~l~~L~~L~L~~n-~l~~~~~~---~~ 79 (251)
T 3m19_A 15 GKKEVDCQGK-SLDSVPSG-----IPADTEKLDLQSTG-LATLSDA----TFRGLTKLTWLNLDYN-QLQTLSAG---VF 79 (251)
T ss_dssp GGTEEECTTC-CCSSCCSC-----CCTTCCEEECTTSC-CCCCCTT----TTTTCTTCCEEECTTS-CCCCCCTT---TT
T ss_pred CCeEEecCCC-CccccCCC-----CCCCCCEEEccCCC-cCccCHh----HhcCcccCCEEECCCC-cCCccCHh---Hh
Confidence 4555666554 34444322 23689999999884 3333121 3456789999999885 34433211 24
Q ss_pred ccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEee
Q 048518 104 QSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELEL 183 (259)
Q Consensus 104 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l 183 (259)
..+++|+.|+++++ .++.+ +...+..+++|+.|+++++ .+..++.. .+..+++|+.|++
T Consensus 80 ~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~~------------------~~~~l~~L~~L~L 138 (251)
T 3m19_A 80 DDLTELGTLGLANN-QLASL-PLGVFDHLTQLDKLYLGGN-QLKSLPSG------------------VFDRLTKLKELRL 138 (251)
T ss_dssp TTCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTT------------------TTTTCTTCCEEEC
T ss_pred ccCCcCCEEECCCC-ccccc-ChhHhcccCCCCEEEcCCC-cCCCcChh------------------HhccCCcccEEEC
Confidence 67899999999987 56666 4444568999999999986 44433221 1345889999999
Q ss_pred CCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEecccc
Q 048518 184 VSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWS 242 (259)
Q Consensus 184 ~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 242 (259)
+++ .++.+.... +..+++|+.|+++++. ++.++.. ....+++|++|++.+++-
T Consensus 139 s~N-~l~~~~~~~---~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 139 NTN-QLQSIPAGA---FDKLTNLQTLSLSTNQ-LQSVPHG-AFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CSS-CCCCCCTTT---TTTCTTCCEEECCSSC-CSCCCTT-TTTTCTTCCEEECCSCCB
T ss_pred cCC-cCCccCHHH---cCcCcCCCEEECCCCc-CCccCHH-HHhCCCCCCEEEeeCCce
Confidence 998 777765543 4568999999999875 5666553 356789999999988754
No 73
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.08 E-value=1.6e-09 Score=101.99 Aligned_cols=126 Identities=11% Similarity=0.061 Sum_probs=63.3
Q ss_pred CCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCC-----------CCcccCCcccc-ccCCCcc-
Q 048518 107 SNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDME-----------KPTTTQGFTEI-NAEDDQV- 173 (259)
Q Consensus 107 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~-----------~~~l~~~~~~~-~~~~~~~- 173 (259)
++|+.|+++++ .++.+ |..+...+++|+.|+++++ .+..++..... +..+.-..+.+ ..+....
T Consensus 673 ~~L~~L~Ls~N-~L~~l-p~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~ 749 (876)
T 4ecn_A 673 INASTVTLSYN-EIQKF-PTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749 (876)
T ss_dssp CCEEEEECCSS-CCCSC-CHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGST
T ss_pred CCcCEEEccCC-cCCcc-CHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCCCCccchHHhhh
Confidence 46777787776 44544 5555567788888888776 33344332211 11111111222 2222333
Q ss_pred -ccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCC------CCCccCChhHHhhcCCccEEEEecccc
Q 048518 174 -TFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCC------PLKYMFSYSMANSLGQLRHLEIINCWS 242 (259)
Q Consensus 174 -~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~------~l~~~~~~~~~~~l~~L~~L~l~~c~~ 242 (259)
.+++|+.|+++++ .++.++.. +..+++|+.|++++++ ....+|. .+..+++|++|++++|..
T Consensus 750 ~~l~~L~~L~Ls~N-~L~~lp~~----l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~--~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 750 TTLPYLSNMDVSYN-CFSSFPTQ----PLNSSQLKAFGIRHQRDAEGNRILRQWPT--GITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp TTCTTCCEEECCSS-CCSSCCCG----GGGCTTCCEEECCCCBCTTCCBCCCCCCT--TGGGCSSCCEEECCSSCC
T ss_pred ccCCCcCEEEeCCC-CCCccchh----hhcCCCCCEEECCCCCCcccccccccChH--HHhcCCCCCEEECCCCCC
Confidence 5677777777766 44443221 3345666666665422 2222332 234455666666655543
No 74
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.08 E-value=9.4e-10 Score=100.61 Aligned_cols=38 Identities=8% Similarity=0.011 Sum_probs=25.2
Q ss_pred cCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEecc
Q 048518 105 SFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCN 144 (259)
Q Consensus 105 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 144 (259)
..++|+.|+++++ .++.+ |...+..+++|+.|+++++.
T Consensus 431 ~~~~L~~L~Ls~N-~l~~l-p~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 431 KGINVSSINLSNN-QISKF-PKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp CCCCEEEEECCSS-CCCSC-CTHHHHTTCCCSEEECCSSC
T ss_pred cCCCCCEEECcCC-ccCcC-CHHHHccCCCCCEEECCCCC
Confidence 4557777887776 45544 55555667788888877754
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.07 E-value=1.7e-09 Score=89.39 Aligned_cols=175 Identities=16% Similarity=0.124 Sum_probs=120.2
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
+++++.+++.+. +++.++.. -.++++.|+++++. +..+.+. ....+++|+.|++++.. +..+ +
T Consensus 9 l~~l~~l~~~~~-~l~~ip~~-----~~~~l~~L~L~~N~-l~~~~~~----~~~~l~~L~~L~L~~n~-l~~~-----~ 71 (290)
T 1p9a_G 9 VASHLEVNCDKR-NLTALPPD-----LPKDTTILHLSENL-LYTFSLA----TLMPYTRLTQLNLDRAE-LTKL-----Q 71 (290)
T ss_dssp STTCCEEECTTS-CCSSCCSC-----CCTTCCEEECTTSC-CSEEEGG----GGTTCTTCCEEECTTSC-CCEE-----E
T ss_pred cCCccEEECCCC-CCCcCCCC-----CCCCCCEEEcCCCc-CCccCHH----HhhcCCCCCEEECCCCc-cCcc-----c
Confidence 456777777664 45555322 34689999999885 4433121 34567899999998853 3333 2
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEE
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEEL 181 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L 181 (259)
....+++|+.|+++++ .++.+ |.. ...+++|+.|+++++. +..++.. .+..+++|+.|
T Consensus 72 ~~~~l~~L~~L~Ls~N-~l~~l-~~~-~~~l~~L~~L~l~~N~-l~~l~~~------------------~~~~l~~L~~L 129 (290)
T 1p9a_G 72 VDGTLPVLGTLDLSHN-QLQSL-PLL-GQTLPALTVLDVSFNR-LTSLPLG------------------ALRGLGELQEL 129 (290)
T ss_dssp CCSCCTTCCEEECCSS-CCSSC-CCC-TTTCTTCCEEECCSSC-CCCCCSS------------------TTTTCTTCCEE
T ss_pred CCCCCCcCCEEECCCC-cCCcC-chh-hccCCCCCEEECCCCc-CcccCHH------------------HHcCCCCCCEE
Confidence 2367889999999887 55554 432 3578999999998863 3333211 24568999999
Q ss_pred eeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccc
Q 048518 182 ELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCW 241 (259)
Q Consensus 182 ~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 241 (259)
+++++ .++.+.... ...+++|+.|+++++. ++.++.. ....+++|++|+++++.
T Consensus 130 ~L~~N-~l~~~~~~~---~~~l~~L~~L~L~~N~-l~~l~~~-~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 130 YLKGN-ELKTLPPGL---LTPTPKLEKLSLANNN-LTELPAG-LLNGLENLDTLLLQENS 183 (290)
T ss_dssp ECTTS-CCCCCCTTT---TTTCTTCCEEECTTSC-CSCCCTT-TTTTCTTCCEEECCSSC
T ss_pred ECCCC-CCCccChhh---cccccCCCEEECCCCc-CCccCHH-HhcCcCCCCEEECCCCc
Confidence 99998 777765543 3467999999998875 6777652 35678999999998874
No 76
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.06 E-value=1.1e-09 Score=98.30 Aligned_cols=64 Identities=23% Similarity=0.219 Sum_probs=43.6
Q ss_pred CccccCCcCEEeeCCCcccc--ccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccc
Q 048518 171 DQVTFPRLEELELVSLTNIK--KLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCW 241 (259)
Q Consensus 171 ~~~~l~~L~~L~l~~c~~l~--~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 241 (259)
.+..+++|+.|++.+|. ++ .++ .. +..+++|+.|++++|. ++.+++. ....+++|++|++++|.
T Consensus 440 ~~~~l~~L~~L~l~~n~-l~~~~~p-~~---~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 440 IFNGLSSLEVLKMAGNS-FQENFLP-DI---FTELRNLTFLDLSQCQ-LEQLSPT-AFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp TTTTCTTCCEEECTTCE-EGGGEEC-SC---CTTCTTCCEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSC
T ss_pred hhhcCCcCcEEECcCCc-Cccccch-hh---hhcccCCCEEECCCCc-cccCChh-hhhcccCCCEEeCCCCc
Confidence 34567788888888873 32 222 11 4567899999998886 4555332 35678899999998883
No 77
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.05 E-value=1.6e-09 Score=98.36 Aligned_cols=197 Identities=14% Similarity=0.106 Sum_probs=117.9
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
+++|+.|++.++. +...... . +..+++|+.|+++++. +..+.+. ....+++|+.|+++++ .+..+...
T Consensus 74 l~~L~~L~L~~n~-l~~~~~~-~-~~~l~~L~~L~L~~n~-l~~~~~~----~~~~l~~L~~L~L~~n-~l~~l~~~--- 141 (597)
T 3oja_B 74 FRQVELLNLNDLQ-IEEIDTY-A-FAYAHTIQKLYMGFNA-IRYLPPH----VFQNVPLLTVLVLERN-DLSSLPRG--- 141 (597)
T ss_dssp CCCCSEEECTTSC-CCEECTT-T-TTTCTTCCEEECCSSC-CCCCCTT----TTTTCTTCCEEECCSS-CCCCCCTT---
T ss_pred CCCCcEEECCCCC-CCCCChH-H-hcCCCCCCEEECCCCc-CCCCCHH----HHcCCCCCCEEEeeCC-CCCCCCHH---
Confidence 6788899988874 5554332 2 5688999999999885 4433121 2356789999999886 34333111
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccC--------------------
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQ-------------------- 161 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~-------------------- 161 (259)
.+..+++|+.|+++++ .++.+.+. .+.++++|+.|+++++.- ..++ .+.++.+..
T Consensus 142 ~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N~l-~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L 216 (597)
T 3oja_B 142 IFHNTPKLTTLSMSNN-NLERIEDD-TFQATTSLQNLQLSSNRL-THVD--LSLIPSLFHANVSYNLLSTLAIPIAVEEL 216 (597)
T ss_dssp TTTTCTTCCEEECCSS-CCCBCCTT-TTTTCTTCCEEECTTSCC-SBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEE
T ss_pred HhccCCCCCEEEeeCC-cCCCCChh-hhhcCCcCcEEECcCCCC-CCcC--hhhhhhhhhhhcccCccccccCCchhhee
Confidence 1467899999999988 56666443 346789999999988643 2221 111111100
Q ss_pred -----------------------CccccccCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCC
Q 048518 162 -----------------------GFTEINAEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLK 218 (259)
Q Consensus 162 -----------------------~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~ 218 (259)
..+.+..+..+..+++|+.|+++++ .++.+.+.. +..+++|+.|+++++. ++
T Consensus 217 ~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~---~~~l~~L~~L~Ls~N~-l~ 291 (597)
T 3oja_B 217 DASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN-ELEKIMYHP---FVKMQRLERLYISNNR-LV 291 (597)
T ss_dssp ECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCEEESGG---GTTCSSCCEEECTTSC-CC
T ss_pred eccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCC-ccCCCCHHH---hcCccCCCEEECCCCC-CC
Confidence 0011112223445566777777666 444432222 3456777777777754 55
Q ss_pred ccCChhHHhhcCCccEEEEecccc
Q 048518 219 YMFSYSMANSLGQLRHLEIINCWS 242 (259)
Q Consensus 219 ~~~~~~~~~~l~~L~~L~l~~c~~ 242 (259)
.++. ....+++|++|++++|..
T Consensus 292 ~l~~--~~~~l~~L~~L~Ls~N~l 313 (597)
T 3oja_B 292 ALNL--YGQPIPTLKVLDLSHNHL 313 (597)
T ss_dssp EEEC--SSSCCTTCCEEECCSSCC
T ss_pred CCCc--ccccCCCCcEEECCCCCC
Confidence 5554 335567888888877743
No 78
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.04 E-value=7.8e-10 Score=99.04 Aligned_cols=207 Identities=13% Similarity=0.075 Sum_probs=125.1
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
+++|++|++.++ .+...... . +.++++|+.|+++++. +..+.+. ....+++|+.|+++++. +..+.. .+
T Consensus 49 l~~L~~L~Ls~n-~i~~~~~~-~-~~~l~~L~~L~Ls~n~-l~~~~~~----~~~~l~~L~~L~Ls~n~-l~~~~~--~~ 117 (549)
T 2z81_A 49 CANLQVLILKSS-RINTIEGD-A-FYSLGSLEHLDLSDNH-LSSLSSS----WFGPLSSLKYLNLMGNP-YQTLGV--TS 117 (549)
T ss_dssp CTTCCEEECTTS-CCCEECTT-T-TTTCTTCCEEECTTSC-CCSCCHH----HHTTCTTCCEEECTTCC-CSSSCS--SC
T ss_pred CCcccEEECCCC-CcCccChh-h-ccccccCCEEECCCCc-cCccCHH----HhccCCCCcEEECCCCc-ccccch--hh
Confidence 689999999988 45555332 2 5689999999999984 4333121 24568999999999873 332210 01
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccC---CccccccCCC--ccccC
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQ---GFTEINAEDD--QVTFP 176 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~---~~~~~~~~~~--~~~l~ 176 (259)
.+..+++|++|+++++..+..+ +...+.++++|+.|++.++.-....+..-+.++.+.. ........+. ...++
T Consensus 118 ~~~~l~~L~~L~L~~n~~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 196 (549)
T 2z81_A 118 LFPNLTNLQTLRIGNVETFSEI-RRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS 196 (549)
T ss_dssp SCTTCTTCCEEEEEESSSCCEE-CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTT
T ss_pred hhhccCCccEEECCCCcccccc-CHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcc
Confidence 3678899999999998767766 4334467999999999997654433333333322211 1111111111 12467
Q ss_pred CcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChh---HHhhcCCccEEEEecccc
Q 048518 177 RLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYS---MANSLGQLRHLEIINCWS 242 (259)
Q Consensus 177 ~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~---~~~~l~~L~~L~l~~c~~ 242 (259)
+|+.|+++++ .++.+..........+++|+.|+++++. ++...... ....+++|+.+++.+|..
T Consensus 197 ~L~~L~L~~n-~l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 197 SVRYLELRDT-NLARFQFSPLPVDEVSSPMKKLAFRGSV-LTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp TBSEEEEESC-BCTTCCCCCCSSCCCCCCCCEEEEESCE-EEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred cccEEEccCC-ccccccccccchhhhhhcccceeccccc-cchhHHHHHHHHhhhhccccccccccccc
Confidence 8888888876 4444321111112346788888888764 22211111 234567889999998854
No 79
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.04 E-value=1.5e-09 Score=102.27 Aligned_cols=205 Identities=13% Similarity=0.126 Sum_probs=118.8
Q ss_pred Hhccceeeeccccccce-----------------eccccCCCC--CCCCccEEEEecCcCcceecccccccccCCCCccc
Q 048518 22 LKRTEDLRLYSLTGVQN-----------------VVHELDDGE--GFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLE 82 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~-----------------~~~~~~~~~--~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~ 82 (259)
+++|+.|++.++.-... ++.. +. ++++|+.|++++|.....+ +. ....+++|+
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~---l~f~~L~~L~~L~Ls~N~l~~~i-P~----~l~~L~~L~ 518 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE---LSWSNLKDLTDVELYNCPNMTQL-PD----FLYDLPELQ 518 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC---CCGGGCTTCCEEEEESCTTCCSC-CG----GGGGCSSCC
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChh---hhhccCCCCCEEECcCCCCCccC-hH----HHhCCCCCC
Confidence 78899999988853331 3322 44 8999999999998655554 22 345678999
Q ss_pred Eeeccccccccc--cc--ccccc-CcccCCCccEEEEecCCCceEecch-hhhhhcCCCcEEEEEeccCcceecccCCCC
Q 048518 83 SLDLINLTNLET--IC--YSQLR-EDQSFSNLRIIYVYSCPKLKYLFSF-SMAKNLLGLQKVEVVNCNKLKMMIGPDMEK 156 (259)
Q Consensus 83 ~L~l~~~~~l~~--~~--~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 156 (259)
.|+++++..+.. +. ...++ ....+++|+.|+++++ .++.+ |. ..+.++++|+.|+++++.-- .++ .-+.+
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~i-p~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L 594 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEF-PASASLQKMVKLGLLDCVHNKVR-HLE-AFGTN 594 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBC-CCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTT
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCcc-CChhhhhcCCCCCEEECCCCCcc-cch-hhcCC
Confidence 999988763432 11 01111 2345668888888887 45544 44 23467888888888876533 444 33333
Q ss_pred CcccC----CccccccCCCccccCC-cCEEeeCCCccccccCcCCC---------------------c----cc--ccCC
Q 048518 157 PTTTQ----GFTEINAEDDQVTFPR-LEELELVSLTNIKKLWPDQF---------------------Q----GM--YCCQ 204 (259)
Q Consensus 157 ~~l~~----~~~~~~~~~~~~~l~~-L~~L~l~~c~~l~~l~~~~~---------------------~----~~--~~~~ 204 (259)
+.+.. ++.....+..+..+++ |+.|+++++ .++.++.... + .. ..++
T Consensus 595 ~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N-~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 595 VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp SEESEEECCSSCCSCCCTTSCEECTTCCEEECCSS-CCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred CcceEEECcCCccccchHHHhhccccCCEEECcCC-CCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 33321 2222233334556666 777777766 3444322100 0 00 0123
Q ss_pred CccEEEEecCCCCCccCChhHHhhcCCccEEEEeccc
Q 048518 205 NLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCW 241 (259)
Q Consensus 205 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 241 (259)
+|+.|++++|. ++.+|. .....+++|++|++++|.
T Consensus 674 ~L~~L~Ls~N~-L~~lp~-~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 674 NASTVTLSYNE-IQKFPT-ELFATGSPISTIILSNNL 708 (876)
T ss_dssp CEEEEECCSSC-CCSCCH-HHHHTTCCCSEEECCSCC
T ss_pred CcCEEEccCCc-CCccCH-HHHccCCCCCEEECCCCc
Confidence 66677776654 344543 234467888888888773
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.00 E-value=2.2e-10 Score=101.51 Aligned_cols=210 Identities=11% Similarity=0.030 Sum_probs=128.7
Q ss_pred EeeeeccchHHH-------HHhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccc-----------
Q 048518 9 VSLLLGNDGTKM-------LLKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSV----------- 70 (259)
Q Consensus 9 ~~l~ls~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~----------- 70 (259)
..|+++++.+.. -+++|+.|++.++. +.... + +..+++|+.|+++++. +..+....
T Consensus 37 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~---~-l~~l~~L~~L~Ls~N~-l~~l~~~~~L~~L~L~~N~ 110 (487)
T 3oja_A 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETL---D-LESLSTLRTLDLNNNY-VQELLVGPSIETLHAANNN 110 (487)
T ss_dssp CEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEE---E-CTTCTTCCEEECCSSE-EEEEEECTTCCEEECCSSC
T ss_pred cEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCc---c-cccCCCCCEEEecCCc-CCCCCCCCCcCEEECcCCc
Confidence 345565555422 26889999998874 43332 2 5588999999999883 33331100
Q ss_pred -cccccCCCCcccEeeccccccccccccccccCcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCccee
Q 048518 71 -RRVRCEVFPLLESLDLINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMM 149 (259)
Q Consensus 71 -~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 149 (259)
.......+++|+.|+++++. +..+.. ..+..+++|+.|+++++ .++...+..+...+++|+.|++++|. +..+
T Consensus 111 l~~~~~~~l~~L~~L~L~~N~-l~~~~~---~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~ 184 (487)
T 3oja_A 111 ISRVSCSRGQGKKNIYLANNK-ITMLRD---LDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDV 184 (487)
T ss_dssp CCCEEECCCSSCEEEECCSSC-CCSGGG---BCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEE
T ss_pred CCCCCccccCCCCEEECCCCC-CCCCCc---hhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCc-cccc
Confidence 00012345677777776653 222211 12567889999999887 56666566665578999999999875 3333
Q ss_pred cccCCCCCcccC----CccccccCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCC-ccCChh
Q 048518 150 IGPDMEKPTTTQ----GFTEINAEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLK-YMFSYS 224 (259)
Q Consensus 150 ~~~~~~~~~l~~----~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~ 224 (259)
+. ...++.+.. ++.....++.+..+++|+.|+++++ .++.++.. +..+++|+.|++++++... .++.
T Consensus 185 ~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~----l~~l~~L~~L~l~~N~l~c~~~~~-- 256 (487)
T 3oja_A 185 KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKA----LRFSQNLEHFDLRGNGFHCGTLRD-- 256 (487)
T ss_dssp EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTT----CCCCTTCCEEECTTCCBCHHHHHH--
T ss_pred cc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCC-cCcccchh----hccCCCCCEEEcCCCCCcCcchHH--
Confidence 22 222333321 3333344456778899999999998 67766443 3467999999999988652 2222
Q ss_pred HHhhcCCccEEEEe
Q 048518 225 MANSLGQLRHLEII 238 (259)
Q Consensus 225 ~~~~l~~L~~L~l~ 238 (259)
....++.|+.+++.
T Consensus 257 ~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 257 FFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhCCCCcEEecc
Confidence 44555566655553
No 81
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.00 E-value=2.2e-09 Score=96.59 Aligned_cols=154 Identities=14% Similarity=0.085 Sum_probs=90.3
Q ss_pred CCCCcccEeeccccccccccccccccCcccCCCccEEEEecCCCceEecc-hhhhhhcCCCcEEEEEeccCcceeccc-C
Q 048518 76 EVFPLLESLDLINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFS-FSMAKNLLGLQKVEVVNCNKLKMMIGP-D 153 (259)
Q Consensus 76 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~-~ 153 (259)
..+++|+.|+++++. +..... ..+..+++|+.|+++++ .++.+.. ...+.++++|+.|+++++.-...++.. -
T Consensus 350 ~~l~~L~~L~l~~n~-l~~~~~---~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 424 (562)
T 3a79_B 350 PSPSSFTFLNFTQNV-FTDSVF---QGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424 (562)
T ss_dssp SSCCCCCEEECCSSC-CCTTTT---TTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC
T ss_pred cCCCCceEEECCCCc-cccchh---hhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh
Confidence 456788888887753 222111 12456778888888776 4554311 122356778888888776543323221 1
Q ss_pred CCCCcccC---Ccccc-ccCCCcccc-CCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhh
Q 048518 154 MEKPTTTQ---GFTEI-NAEDDQVTF-PRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANS 228 (259)
Q Consensus 154 ~~~~~l~~---~~~~~-~~~~~~~~l-~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 228 (259)
.+++.+.. ..+.+ ... ...+ ++|+.|+++++ .++.++... ..+++|+.|+++++. ++.+|.. ....
T Consensus 425 ~~l~~L~~L~l~~n~l~~~~--~~~l~~~L~~L~L~~N-~l~~ip~~~----~~l~~L~~L~L~~N~-l~~l~~~-~~~~ 495 (562)
T 3a79_B 425 AWAESILVLNLSSNMLTGSV--FRCLPPKVKVLDLHNN-RIMSIPKDV----THLQALQELNVASNQ-LKSVPDG-VFDR 495 (562)
T ss_dssp CCCTTCCEEECCSSCCCGGG--GSSCCTTCSEEECCSS-CCCCCCTTT----TSSCCCSEEECCSSC-CCCCCTT-STTT
T ss_pred cCcccCCEEECCCCCCCcch--hhhhcCcCCEEECCCC-cCcccChhh----cCCCCCCEEECCCCC-CCCCCHH-HHhc
Confidence 11222211 11111 111 1123 68999999988 777665443 267899999998865 6777763 3567
Q ss_pred cCCccEEEEeccccc
Q 048518 229 LGQLRHLEIINCWSM 243 (259)
Q Consensus 229 l~~L~~L~l~~c~~l 243 (259)
+++|+++++++++-.
T Consensus 496 l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 496 LTSLQYIWLHDNPWD 510 (562)
T ss_dssp CTTCCCEECCSCCBC
T ss_pred CCCCCEEEecCCCcC
Confidence 889999999887543
No 82
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.99 E-value=5.8e-09 Score=95.84 Aligned_cols=151 Identities=11% Similarity=-0.013 Sum_probs=78.8
Q ss_pred CCCcccEeeccccccccccccccccCcccCCCccEEEEecCCCce--EecchhhhhhcCCCcEEEEEeccCcceeccc-C
Q 048518 77 VFPLLESLDLINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLK--YLFSFSMAKNLLGLQKVEVVNCNKLKMMIGP-D 153 (259)
Q Consensus 77 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~--~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~ 153 (259)
.+++|+.|+++++. +..+.. ..+..+++|+.|++.++. ++ ...|.. +.++++|+.|+++++. +..++.. -
T Consensus 428 ~l~~L~~L~Ls~n~-l~~~~~---~~~~~~~~L~~L~l~~n~-l~~~~~~p~~-~~~l~~L~~L~Ls~N~-l~~i~~~~~ 500 (680)
T 1ziw_A 428 GLENIFEIYLSYNK-YLQLTR---NSFALVPSLQRLMLRRVA-LKNVDSSPSP-FQPLRNLTILDLSNNN-IANINDDML 500 (680)
T ss_dssp TCTTCCEEECCSCS-EEECCT---TTTTTCTTCCEEECTTSC-CBCTTCSSCT-TTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred CcccccEEecCCCC-cceeCh---hhhhcCcccccchhcccc-ccccccCCcc-cccCCCCCEEECCCCC-CCcCChhhh
Confidence 34555555555543 111110 023456666666666552 21 111222 2467777777777653 3333221 1
Q ss_pred CCCCcccC---CccccccC----------CCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCcc
Q 048518 154 MEKPTTTQ---GFTEINAE----------DDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYM 220 (259)
Q Consensus 154 ~~~~~l~~---~~~~~~~~----------~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 220 (259)
.+++.+.. ..+.++.. ..+..+++|+.|+++++ .++.++... ...+++|+.|+++++ .++.+
T Consensus 501 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~---~~~l~~L~~L~Ls~N-~l~~l 575 (680)
T 1ziw_A 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEV---FKDLFELKIIDLGLN-NLNTL 575 (680)
T ss_dssp TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSS-CCCCC
T ss_pred ccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHH---cccccCcceeECCCC-CCCcC
Confidence 22222221 11111110 12456677888888776 566554433 346788888888665 46666
Q ss_pred CChhHHhhcCCccEEEEecc
Q 048518 221 FSYSMANSLGQLRHLEIINC 240 (259)
Q Consensus 221 ~~~~~~~~l~~L~~L~l~~c 240 (259)
+.. ....+++|++|+++++
T Consensus 576 ~~~-~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 576 PAS-VFNNQVSLKSLNLQKN 594 (680)
T ss_dssp CTT-TTTTCTTCCEEECTTS
T ss_pred CHh-HhCCCCCCCEEECCCC
Confidence 653 3456788888888877
No 83
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.98 E-value=2.6e-09 Score=100.71 Aligned_cols=162 Identities=17% Similarity=0.143 Sum_probs=102.9
Q ss_pred HHhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeeccccccccccccccc
Q 048518 21 LLKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQL 100 (259)
Q Consensus 21 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 100 (259)
..+++++|+++++. ++.+... . +.++++|+.|++++|.....+ +.. ....+++|+.|+++++. +..+..
T Consensus 22 lp~~l~~LdLs~N~-i~~i~~~-~-~~~l~~L~~LdLs~n~~~~~i-~~~---~f~~L~~L~~L~Ls~N~-l~~~~p--- 90 (844)
T 3j0a_A 22 VLNTTERLLLSFNY-IRTVTAS-S-FPFLEQLQLLELGSQYTPLTI-DKE---AFRNLPNLRILDLGSSK-IYFLHP--- 90 (844)
T ss_dssp SCTTCCEEEEESCC-CCEECSS-S-CSSCCSCSEEEECTTCCCCEE-CTT---TTSSCTTCCEEECTTCC-CCEECT---
T ss_pred CCCCcCEEECCCCc-CCccChh-H-CcccccCeEEeCCCCCCcccc-CHH---HhcCCCCCCEEECCCCc-CcccCH---
Confidence 46889999998874 5554322 2 668999999999999665544 211 34568999999999864 333311
Q ss_pred cCcccCCCccEEEEecCCCceE-ecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcC
Q 048518 101 REDQSFSNLRIIYVYSCPKLKY-LFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLE 179 (259)
Q Consensus 101 ~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~ 179 (259)
..+..+++|++|++++| .+++ .+....+.++++|+.|+++++......+. ..+..+++|+
T Consensus 91 ~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~------------------~~~~~L~~L~ 151 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH------------------PSFGKLNSLK 151 (844)
T ss_dssp TSSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCC------------------GGGGTCSSCC
T ss_pred hHccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccccccc------------------hhHhhCCCCC
Confidence 13678999999999998 4544 22222346899999999998754322111 1234567777
Q ss_pred EEeeCCCccccccCcCCCcccccC--CCccEEEEecCCC
Q 048518 180 ELELVSLTNIKKLWPDQFQGMYCC--QNLTKVTVTRCCP 216 (259)
Q Consensus 180 ~L~l~~c~~l~~l~~~~~~~~~~~--~~L~~L~l~~c~~ 216 (259)
.|+++++ .++.+.... +..+ ++|+.|+++++.-
T Consensus 152 ~L~Ls~N-~i~~~~~~~---l~~l~~~~L~~L~L~~n~l 186 (844)
T 3j0a_A 152 SIDFSSN-QIFLVCEHE---LEPLQGKTLSFFSLAANSL 186 (844)
T ss_dssp EEEEESS-CCCCCCSGG---GHHHHHCSSCCCEECCSBS
T ss_pred EEECCCC-cCCeeCHHH---cccccCCccceEECCCCcc
Confidence 7777776 344332222 1122 5666666666543
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.98 E-value=8.4e-10 Score=92.06 Aligned_cols=200 Identities=15% Similarity=0.057 Sum_probs=118.5
Q ss_pred HhccceeeeccccccceeccccCCCC-------CCCCccEEEEecCcCcceecccccccccCCCCcccEeeccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGE-------GFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLET 94 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~-------~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 94 (259)
...++.|++.++. +........ .. ++++|++|+++++.....+ +... ....+++|+.|++++.. +..
T Consensus 62 ~~~L~~L~L~~n~-l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~--~~~~l~~L~~L~Ls~N~-l~~ 135 (312)
T 1wwl_A 62 TDIIKSLSLKRLT-VRAARIPSR-ILFGALRVLGISGLQELTLENLEVTGTA-PPPL--LEATGPDLNILNLRNVS-WAT 135 (312)
T ss_dssp HHHHHHCCCCEEE-EEEEECBHH-HHHHHHHHHTTSCCCEEEEEEEBCBSCC-CCCS--SSCCSCCCSEEEEESCB-CSS
T ss_pred HHHHhhccccccc-ccCCCcCHH-HHHHHHHhcCcCCccEEEccCCcccchh-HHHH--HHhcCCCccEEEccCCC-Ccc
Confidence 4558888888764 322211101 22 5899999999998543333 2111 01568999999999863 333
Q ss_pred cccccccCccc-----CCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCccee--cccC--CCCCcccC---C
Q 048518 95 ICYSQLREDQS-----FSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMM--IGPD--MEKPTTTQ---G 162 (259)
Q Consensus 95 ~~~~~~~~~~~-----~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~--~~~~--~~~~~l~~---~ 162 (259)
. ... +.. .++|++|+++++ .++.+.+. .+.++++|+.|+++++.....+ +... +.++.+.. .
T Consensus 136 ~-~~~---~~~l~~~~~~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~ 209 (312)
T 1wwl_A 136 R-DAW---LAELQQWLKPGLKVLSIAQA-HSLNFSCE-QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209 (312)
T ss_dssp S-SSH---HHHHHTTCCTTCCEEEEESC-SCCCCCTT-TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECT
T ss_pred h-hHH---HHHHHHhhcCCCcEEEeeCC-CCccchHH-HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECC
Confidence 3 111 222 389999999998 46666333 3468999999999998744321 1111 23333221 2
Q ss_pred ccccccCC----C-ccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEE
Q 048518 163 FTEINAED----D-QVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEI 237 (259)
Q Consensus 163 ~~~~~~~~----~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l 237 (259)
.+.++.++ . ...+++|+.|+++++ .++....... ...+++|+.|+++++. ++.+|.. .. ++|++|++
T Consensus 210 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~--~~~l~~L~~L~Ls~N~-l~~ip~~--~~--~~L~~L~L 281 (312)
T 1wwl_A 210 NAGMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPS--CDWPSQLNSLNLSFTG-LKQVPKG--LP--AKLSVLDL 281 (312)
T ss_dssp TSCCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSC--CCCCTTCCEEECTTSC-CSSCCSS--CC--SEEEEEEC
T ss_pred CCcCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhh--hhhcCCCCEEECCCCc-cChhhhh--cc--CCceEEEC
Confidence 22222111 1 134578888888887 4555432111 3346889999998876 5666652 12 68889998
Q ss_pred eccc
Q 048518 238 INCW 241 (259)
Q Consensus 238 ~~c~ 241 (259)
+++.
T Consensus 282 s~N~ 285 (312)
T 1wwl_A 282 SYNR 285 (312)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8873
No 85
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.97 E-value=5.2e-09 Score=95.21 Aligned_cols=59 Identities=15% Similarity=0.008 Sum_probs=43.0
Q ss_pred ccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccccc
Q 048518 174 TFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWSM 243 (259)
Q Consensus 174 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 243 (259)
.+++|+.|+++++ .++.++. .+++|+.|++++| .++.+|. .+..+++|+.|++++++.-
T Consensus 239 ~l~~L~~L~Ls~N-~L~~lp~-------~~~~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 239 LPSELKELMVSGN-RLTSLPM-------LPSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CCTTCCEEECCSS-CCSCCCC-------CCTTCCEEECCSS-CCCSCCG--GGGGSCTTCEEECCSCCCC
T ss_pred CCCcCcEEECCCC-CCCcCCc-------ccccCcEEeCCCC-CCCcCCH--HHhhccccCEEEecCCCCC
Confidence 4567777777776 5665533 3578999999887 4667765 4678899999999988644
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.97 E-value=2.4e-10 Score=95.24 Aligned_cols=205 Identities=11% Similarity=0.072 Sum_probs=120.0
Q ss_pred ccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceeccccccccc--CCCCcccEeeccccccccccc-cccc
Q 048518 24 RTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRC--EVFPLLESLDLINLTNLETIC-YSQL 100 (259)
Q Consensus 24 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~-~~~~ 100 (259)
.++.+.+.++.-.............+++|++|+++++...... +. .. ..+++|+.|+++++.--.... ....
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~----~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTM-PP----LPLEATGLALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCC-CC----CSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccch-hh----hhhhccCCCCCEEEeecccccchhhhhHHH
Confidence 3566676665322111111011224567999999999543332 21 12 568999999999864322110 0001
Q ss_pred cCcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcce--eccc--CCCCCcccC---CccccccCCC--
Q 048518 101 REDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKM--MIGP--DMEKPTTTQ---GFTEINAEDD-- 171 (259)
Q Consensus 101 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~--~~~~--~~~~~~l~~---~~~~~~~~~~-- 171 (259)
....+++|++|+++++ .++...+ ..+.++++|+.|+++++.-... ++.. .+.++.+.. ..+.++..+.
T Consensus 140 -~~~~~~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 216 (310)
T 4glp_A 140 -QQWLKPGLKVLSIAQA-HSPAFSC-EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVC 216 (310)
T ss_dssp -HTTBCSCCCEEEEECC-SSCCCCT-TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHH
T ss_pred -HhhhccCCCEEEeeCC-CcchhhH-HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHH
Confidence 1346899999999998 4565533 3446899999999999864432 1111 123333322 2233332222
Q ss_pred ---ccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEecccc
Q 048518 172 ---QVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWS 242 (259)
Q Consensus 172 ---~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 242 (259)
...+++|+.|+++++ .++.+.+........+++|++|+++++. ++.+|.. + .++|++|+++++..
T Consensus 217 ~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~-~---~~~L~~L~Ls~N~l 284 (310)
T 4glp_A 217 AALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKG-L---PAKLRVLDLSSNRL 284 (310)
T ss_dssp HHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSC-C---CSCCSCEECCSCCC
T ss_pred HHHHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCCC-CCchhhh-h---cCCCCEEECCCCcC
Confidence 245689999999998 5665532221112223799999998875 6677652 2 27899999988853
No 87
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.96 E-value=9.2e-09 Score=91.54 Aligned_cols=185 Identities=12% Similarity=0.017 Sum_probs=108.6
Q ss_pred hccceeeeccccccceeccccC--CCCCCCCccEEEEecCcCcceecccc-------------------ccc-c-cCCCC
Q 048518 23 KRTEDLRLYSLTGVQNVVHELD--DGEGFPRLQHLHVTGCSEILHIVGSV-------------------RRV-R-CEVFP 79 (259)
Q Consensus 23 ~~L~~L~l~~~~~~~~~~~~~~--~~~~l~~L~~L~l~~c~~l~~~~~~~-------------------~~~-~-~~~~~ 79 (259)
++|++|++.++.-...++.... ....+++|+.+++.++.. .++... ... . ...++
T Consensus 247 ~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~ 324 (520)
T 2z7x_B 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS 324 (520)
T ss_dssp SSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC
T ss_pred CcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCC
Confidence 3788888877743223332210 014677777777766532 110000 000 0 14567
Q ss_pred cccEeeccccccccccccccccCcccCCCccEEEEecCCCceEecc-hhhhhhcCCCcEEEEEeccCcceecccCCCCCc
Q 048518 80 LLESLDLINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFS-FSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPT 158 (259)
Q Consensus 80 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 158 (259)
+|+.|+++++. +..... ..+..+++|++|+++++ .++.+.. ...+..+++|+.|+++++.-...++..
T Consensus 325 ~L~~L~Ls~n~-l~~~~~---~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~------ 393 (520)
T 2z7x_B 325 PFLHLDFSNNL-LTDTVF---ENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG------ 393 (520)
T ss_dssp CCCEEECCSSC-CCTTTT---TTCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC------
T ss_pred cccEEEeECCc-cChhhh---hhhccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcccccc------
Confidence 77788877763 222111 12567788888888877 3443211 122457788888888876543323321
Q ss_pred ccCCccccccCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEe
Q 048518 159 TTQGFTEINAEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEII 238 (259)
Q Consensus 159 l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 238 (259)
....+++|+.|+++++ .++...... . .++|+.|+++++. ++.+|. ....+++|++|+++
T Consensus 394 ------------~~~~l~~L~~L~Ls~N-~l~~~~~~~---l--~~~L~~L~Ls~N~-l~~ip~--~~~~l~~L~~L~L~ 452 (520)
T 2z7x_B 394 ------------DCSWTKSLLSLNMSSN-ILTDTIFRC---L--PPRIKVLDLHSNK-IKSIPK--QVVKLEALQELNVA 452 (520)
T ss_dssp ------------SCCCCTTCCEEECCSS-CCCGGGGGS---C--CTTCCEEECCSSC-CCCCCG--GGGGCTTCCEEECC
T ss_pred ------------hhccCccCCEEECcCC-CCCcchhhh---h--cccCCEEECCCCc-ccccch--hhhcCCCCCEEECC
Confidence 1345789999999998 343222221 1 1799999999985 677766 34589999999999
Q ss_pred ccc
Q 048518 239 NCW 241 (259)
Q Consensus 239 ~c~ 241 (259)
+|.
T Consensus 453 ~N~ 455 (520)
T 2z7x_B 453 SNQ 455 (520)
T ss_dssp SSC
T ss_pred CCc
Confidence 984
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.96 E-value=3.3e-09 Score=87.68 Aligned_cols=145 Identities=15% Similarity=0.181 Sum_probs=106.0
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
+++|+.|++.++ .+..+.. +..+++|+.|+++++. +..+ + ....+++|+.|+++++. +..+ +
T Consensus 67 l~~L~~L~L~~n-~l~~~~~----l~~l~~L~~L~l~~n~-l~~~-~-----~l~~l~~L~~L~L~~n~-i~~~-----~ 128 (291)
T 1h6t_A 67 LPNVTKLFLNGN-KLTDIKP----LANLKNLGWLFLDENK-VKDL-S-----SLKDLKKLKSLSLEHNG-ISDI-----N 128 (291)
T ss_dssp CTTCCEEECCSS-CCCCCGG----GTTCTTCCEEECCSSC-CCCG-G-----GGTTCTTCCEEECTTSC-CCCC-----G
T ss_pred CCCCCEEEccCC-ccCCCcc----cccCCCCCEEECCCCc-CCCC-h-----hhccCCCCCEEECCCCc-CCCC-----h
Confidence 789999999887 3444422 5589999999999884 4433 2 34568999999999873 4333 2
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEE
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEEL 181 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L 181 (259)
.+..+++|+.|+++++ .++.+ + ....+++|+.|++++|. +..++ .+..+++|+.|
T Consensus 129 ~l~~l~~L~~L~l~~n-~l~~~-~--~l~~l~~L~~L~L~~N~-l~~~~--------------------~l~~l~~L~~L 183 (291)
T 1h6t_A 129 GLVHLPQLESLYLGNN-KITDI-T--VLSRLTKLDTLSLEDNQ-ISDIV--------------------PLAGLTKLQNL 183 (291)
T ss_dssp GGGGCTTCCEEECCSS-CCCCC-G--GGGGCTTCSEEECCSSC-CCCCG--------------------GGTTCTTCCEE
T ss_pred hhcCCCCCCEEEccCC-cCCcc-h--hhccCCCCCEEEccCCc-cccch--------------------hhcCCCccCEE
Confidence 3568899999999998 45554 2 34689999999999873 33322 13457899999
Q ss_pred eeCCCccccccCcCCCcccccCCCccEEEEecCC
Q 048518 182 ELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCC 215 (259)
Q Consensus 182 ~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~ 215 (259)
+++++ .++.+.. +..+++|+.|++++++
T Consensus 184 ~L~~N-~i~~l~~-----l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 184 YLSKN-HISDLRA-----LAGLKNLDVLELFSQE 211 (291)
T ss_dssp ECCSS-CCCBCGG-----GTTCTTCSEEEEEEEE
T ss_pred ECCCC-cCCCChh-----hccCCCCCEEECcCCc
Confidence 99988 6666532 4468999999998875
No 89
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.93 E-value=1.1e-08 Score=93.20 Aligned_cols=53 Identities=17% Similarity=0.053 Sum_probs=39.0
Q ss_pred cCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccc
Q 048518 175 FPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCW 241 (259)
Q Consensus 175 l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 241 (259)
+++|+.|+++++ .++.++ ..+++|+.|+++++ .++.+|. .+++|++|++++|.
T Consensus 220 ~~~L~~L~Ls~N-~L~~lp-------~~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 220 PSGLKELIVSGN-RLTSLP-------VLPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRNQ 272 (622)
T ss_dssp CTTCCEEECCSS-CCSCCC-------CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC
T ss_pred CCCCCEEEccCC-ccCcCC-------CCCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCCC
Confidence 367888888876 666654 23588999999887 5677765 45788999998883
No 90
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.91 E-value=1.5e-08 Score=91.11 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=18.5
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecC
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGC 60 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 60 (259)
.+++++|++.++. +...... . +.++++|+.|+++++
T Consensus 51 ~~~L~~L~Ls~N~-i~~~~~~-~-~~~l~~L~~L~Ls~N 86 (562)
T 3a79_B 51 PPRTKALSLSQNS-ISELRMP-D-ISFLSELRVLRLSHN 86 (562)
T ss_dssp CTTCCEEECCSSC-CCCCCGG-G-TTTCTTCCEEECCSC
T ss_pred CCCcCEEECCCCC-ccccChh-h-hccCCCccEEECCCC
Confidence 3556666666553 3333211 1 445666666666655
No 91
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.88 E-value=2.6e-08 Score=87.38 Aligned_cols=75 Identities=17% Similarity=0.087 Sum_probs=33.8
Q ss_pred CCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEeeCCC
Q 048518 107 SNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELELVSL 186 (259)
Q Consensus 107 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c 186 (259)
++|++|+++++ .++.+ |. +.++++|+.|+++++. +..++.....+..+.-..+.++.++.+..+++|+.|+++++
T Consensus 131 ~~L~~L~L~~n-~l~~l-p~--~~~l~~L~~L~l~~N~-l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 131 PLLEYLGVSNN-QLEKL-PE--LQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEECCSS-CCSSC-CC--CTTCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred CCCCEEECcCC-CCCCC-cc--cCCCCCCCEEECCCCc-CcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCC
Confidence 45666666655 34433 31 3456666666666542 33333222222222222222222334445555555555554
No 92
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.87 E-value=3.7e-09 Score=95.96 Aligned_cols=145 Identities=16% Similarity=0.184 Sum_probs=102.7
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
+++|+.|++.++. +..+.. +..+++|+.|++++|. +..+ + ....+++|+.|+++++. +..+ +
T Consensus 64 l~~L~~L~Ls~N~-l~~~~~----l~~l~~L~~L~Ls~N~-l~~l-~-----~l~~l~~L~~L~Ls~N~-l~~l-----~ 125 (605)
T 1m9s_A 64 LPNVTKLFLNGNK-LTDIKP----LTNLKNLGWLFLDENK-IKDL-S-----SLKDLKKLKSLSLEHNG-ISDI-----N 125 (605)
T ss_dssp CTTCCEEECTTSC-CCCCGG----GGGCTTCCEEECCSSC-CCCC-T-----TSTTCTTCCEEECTTSC-CCCC-----G
T ss_pred CCCCCEEEeeCCC-CCCChh----hccCCCCCEEECcCCC-CCCC-h-----hhccCCCCCEEEecCCC-CCCC-----c
Confidence 7899999998873 444422 5589999999999984 4433 2 34568999999998864 3332 2
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEE
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEEL 181 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L 181 (259)
.+..+++|+.|++++| .++.+ ..+..+++|+.|++++|. +..++. +..+++|+.|
T Consensus 126 ~l~~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N~-l~~~~~--------------------l~~l~~L~~L 180 (605)
T 1m9s_A 126 GLVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP--------------------LAGLTKLQNL 180 (605)
T ss_dssp GGGGCTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSSC-CCCCGG--------------------GTTCTTCCEE
T ss_pred cccCCCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCCc-CCCchh--------------------hccCCCCCEE
Confidence 3678899999999998 46654 234679999999998874 322211 3357888888
Q ss_pred eeCCCccccccCcCCCcccccCCCccEEEEecCC
Q 048518 182 ELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCC 215 (259)
Q Consensus 182 ~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~ 215 (259)
+++++ .++.+.. +..+++|+.|++++|+
T Consensus 181 ~Ls~N-~i~~l~~-----l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 181 YLSKN-HISDLRA-----LAGLKNLDVLELFSQE 208 (605)
T ss_dssp ECCSS-CCCBCGG-----GTTCTTCSEEECCSEE
T ss_pred ECcCC-CCCCChH-----HccCCCCCEEEccCCc
Confidence 88887 5665521 4467888888888765
No 93
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.86 E-value=1.4e-09 Score=98.31 Aligned_cols=66 Identities=12% Similarity=0.027 Sum_probs=41.1
Q ss_pred ccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEec---CCCCCccCCh----hHHhhcCCccEEEEecccc
Q 048518 174 TFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTR---CCPLKYMFSY----SMANSLGQLRHLEIINCWS 242 (259)
Q Consensus 174 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~---c~~l~~~~~~----~~~~~l~~L~~L~l~~c~~ 242 (259)
.+|+|+.|++ .|..++.-..... ...+++|++|++++ |..++..|.. .+...+++|++|+++.|..
T Consensus 376 ~~~~L~~L~l-~~~~l~~~~~~~l--~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~ 448 (592)
T 3ogk_B 376 GCQELEYMAV-YVSDITNESLESI--GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG 448 (592)
T ss_dssp HCTTCSEEEE-EESCCCHHHHHHH--HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGG
T ss_pred hCccCeEEEe-ecCCccHHHHHHH--HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCC
Confidence 4677888877 3434443211110 22378899999984 5677765432 2356788999999987753
No 94
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.84 E-value=2.3e-08 Score=79.57 Aligned_cols=134 Identities=15% Similarity=0.051 Sum_probs=85.8
Q ss_pred CCCccEEEEecCcCcceecccccccccCCCCcccEeeccccccccccccccccCcccCCCccEEEEecCCCceEecchhh
Q 048518 49 FPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFSM 128 (259)
Q Consensus 49 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 128 (259)
.++|+.|+++++. +..+.+. ....+++|+.|++++.. +..+... .+..+++|+.|+++++ .++.+ +...
T Consensus 39 ~~~L~~L~Ls~n~-i~~~~~~----~~~~l~~L~~L~L~~N~-l~~i~~~---~~~~l~~L~~L~Ls~N-~l~~l-~~~~ 107 (229)
T 3e6j_A 39 PTNAQILYLHDNQ-ITKLEPG----VFDSLINLKELYLGSNQ-LGALPVG---VFDSLTQLTVLDLGTN-QLTVL-PSAV 107 (229)
T ss_dssp CTTCSEEECCSSC-CCCCCTT----TTTTCTTCCEEECCSSC-CCCCCTT---TTTTCTTCCEEECCSS-CCCCC-CTTT
T ss_pred CCCCCEEEcCCCc-cCccCHH----HhhCccCCcEEECCCCC-CCCcChh---hcccCCCcCEEECCCC-cCCcc-ChhH
Confidence 4788888888874 3333111 23457888888888753 3333111 1456788888888887 56655 4344
Q ss_pred hhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCccE
Q 048518 129 AKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTK 208 (259)
Q Consensus 129 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~ 208 (259)
+..+++|+.|+++++. +..++. .+..+++|+.|+++++ .++.+.... +..+++|+.
T Consensus 108 ~~~l~~L~~L~Ls~N~-l~~lp~-------------------~~~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~ 163 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNK-LTELPR-------------------GIERLTHLTHLALDQN-QLKSIPHGA---FDRLSSLTH 163 (229)
T ss_dssp TTTCTTCCEEECCSSC-CCSCCT-------------------TGGGCTTCSEEECCSS-CCCCCCTTT---TTTCTTCCE
T ss_pred hCcchhhCeEeccCCc-ccccCc-------------------ccccCCCCCEEECCCC-cCCccCHHH---HhCCCCCCE
Confidence 4678888888887753 333321 2445788888888887 666665433 445788888
Q ss_pred EEEecCCCC
Q 048518 209 VTVTRCCPL 217 (259)
Q Consensus 209 L~l~~c~~l 217 (259)
|++.+++.-
T Consensus 164 L~l~~N~~~ 172 (229)
T 3e6j_A 164 AYLFGNPWD 172 (229)
T ss_dssp EECTTSCBC
T ss_pred EEeeCCCcc
Confidence 888877643
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.83 E-value=3.3e-08 Score=77.31 Aligned_cols=136 Identities=13% Similarity=0.046 Sum_probs=89.0
Q ss_pred CCCCccEEEEecCcCcceecccccccccCCCCcccEeeccccccccccccccccCcccCCCccEEEEecCCCceEecchh
Q 048518 48 GFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFS 127 (259)
Q Consensus 48 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 127 (259)
..++|+.|+++++. +..+ +.. ....+++|+.|++++. .+..+... .+..+++|++|+++++ .++.+ +..
T Consensus 26 ~~~~l~~L~l~~n~-l~~~-~~~---~~~~l~~L~~L~l~~n-~l~~~~~~---~~~~l~~L~~L~Ls~n-~l~~~-~~~ 94 (208)
T 2o6s_A 26 IPAQTTYLDLETNS-LKSL-PNG---VFDELTSLTQLYLGGN-KLQSLPNG---VFNKLTSLTYLNLSTN-QLQSL-PNG 94 (208)
T ss_dssp CCTTCSEEECCSSC-CCCC-CTT---TTTTCTTCSEEECCSS-CCCCCCTT---TTTTCTTCCEEECCSS-CCCCC-CTT
T ss_pred CCCCCcEEEcCCCc-cCcC-Chh---hhcccccCcEEECCCC-ccCccChh---hcCCCCCcCEEECCCC-cCCcc-CHh
Confidence 45689999999884 4433 111 2345789999999875 34433111 1457889999999887 56655 434
Q ss_pred hhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCcc
Q 048518 128 MAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLT 207 (259)
Q Consensus 128 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~ 207 (259)
.+.++++|+.|+++++. +..++.. .+..+++|+.|+++++ .++.+.... +..+++|+
T Consensus 95 ~~~~l~~L~~L~L~~N~-l~~~~~~------------------~~~~l~~L~~L~l~~N-~l~~~~~~~---~~~l~~L~ 151 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQ-LQSLPDG------------------VFDKLTQLKDLRLYQN-QLKSVPDGV---FDRLTSLQ 151 (208)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTT------------------TTTTCTTCCEEECCSS-CCSCCCTTT---TTTCTTCC
T ss_pred HhcCccCCCEEEcCCCc-CcccCHh------------------HhccCCcCCEEECCCC-ccceeCHHH---hccCCCcc
Confidence 44678899999988753 3332211 1345788999999887 566654433 34578999
Q ss_pred EEEEecCCCC
Q 048518 208 KVTVTRCCPL 217 (259)
Q Consensus 208 ~L~l~~c~~l 217 (259)
.|++++++..
T Consensus 152 ~L~l~~N~~~ 161 (208)
T 2o6s_A 152 YIWLHDNPWD 161 (208)
T ss_dssp EEECCSCCBC
T ss_pred EEEecCCCee
Confidence 9999887643
No 96
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.83 E-value=4.1e-08 Score=86.17 Aligned_cols=79 Identities=18% Similarity=0.111 Sum_probs=36.5
Q ss_pred CCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEeeCCC
Q 048518 107 SNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELELVSL 186 (259)
Q Consensus 107 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c 186 (259)
++|++|+++++ .++.+ |. +.++++|+.|+++++. +..++.....+..+.-..+.+..++.+..+++|+.|+++++
T Consensus 173 ~~L~~L~L~~n-~l~~l-~~--~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 173 PSLEFIAAGNN-QLEEL-PE--LQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 247 (454)
T ss_dssp TTCCEEECCSS-CCSSC-CC--CTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred ccccEEECcCC-cCCcC-cc--ccCCCCCCEEECCCCc-CCcCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCC
Confidence 45666666655 34433 31 2456666666666543 22222222222222222222233334555666777777665
Q ss_pred ccccc
Q 048518 187 TNIKK 191 (259)
Q Consensus 187 ~~l~~ 191 (259)
.++.
T Consensus 248 -~l~~ 251 (454)
T 1jl5_A 248 -LLKT 251 (454)
T ss_dssp -CCSS
T ss_pred -cCCc
Confidence 3443
No 97
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.81 E-value=1.5e-08 Score=76.41 Aligned_cols=38 Identities=11% Similarity=0.177 Sum_probs=16.5
Q ss_pred ccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEec
Q 048518 104 QSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNC 143 (259)
Q Consensus 104 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 143 (259)
..+++|+.|+++++ .++...+. ...++++|+.|++++|
T Consensus 68 ~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N 105 (168)
T 2ell_A 68 PKLPKLKKLELSEN-RIFGGLDM-LAEKLPNLTHLNLSGN 105 (168)
T ss_dssp CCCSSCCEEEEESC-CCCSCCCH-HHHHCTTCCEEECBSS
T ss_pred ccCCCCCEEECcCC-cCchHHHH-HHhhCCCCCEEeccCC
Confidence 34555555555554 23332122 2233455555555443
No 98
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.81 E-value=1.2e-08 Score=77.11 Aligned_cols=135 Identities=18% Similarity=0.139 Sum_probs=94.0
Q ss_pred CCCcccEeecccccccccccccccc-CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCC
Q 048518 77 VFPLLESLDLINLTNLETICYSQLR-EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDME 155 (259)
Q Consensus 77 ~~~~L~~L~l~~~~~l~~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 155 (259)
..++|+.|+++++. +.. ..+| .+..+++|+.|+++++. ++.+ ..+..+++|+.|++++|.-...++.
T Consensus 22 ~~~~L~~L~l~~n~-l~~---~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~---- 89 (168)
T 2ell_A 22 TPAAVRELVLDNCK-SND---GKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENRIFGGLDM---- 89 (168)
T ss_dssp CTTSCSEEECCSCB-CBT---TBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCCCCSCCCH----
T ss_pred CcccCCEEECCCCC-CCh---hhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCcCchHHHH----
Confidence 45778888888764 320 0112 24678999999999984 6654 2346789999999999754322211
Q ss_pred CCcccCCccccccCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCC--hhHHhhcCCcc
Q 048518 156 KPTTTQGFTEINAEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFS--YSMANSLGQLR 233 (259)
Q Consensus 156 ~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~ 233 (259)
....+++|+.|+++++ .++.+.... .+..+++|+.|++++++ ++.++. ......+++|+
T Consensus 90 ---------------~~~~l~~L~~L~Ls~N-~l~~~~~~~--~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~ 150 (168)
T 2ell_A 90 ---------------LAEKLPNLTHLNLSGN-KLKDISTLE--PLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLT 150 (168)
T ss_dssp ---------------HHHHCTTCCEEECBSS-SCCSSGGGG--GGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCC
T ss_pred ---------------HHhhCCCCCEEeccCC-ccCcchhHH--HHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCc
Confidence 1234899999999998 666654211 15578999999999986 566654 13567899999
Q ss_pred EEEEecccc
Q 048518 234 HLEIINCWS 242 (259)
Q Consensus 234 ~L~l~~c~~ 242 (259)
+|++.+|..
T Consensus 151 ~L~l~~n~~ 159 (168)
T 2ell_A 151 YLDGYDRED 159 (168)
T ss_dssp EETTEETTS
T ss_pred EecCCCCCh
Confidence 999999864
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.79 E-value=5.3e-08 Score=82.82 Aligned_cols=159 Identities=16% Similarity=0.075 Sum_probs=98.2
Q ss_pred CCccEEEEecCcCcceecccccccccC-CCCcccEeeccccccccccccccccCcccCCCccEEEEecCCCceEecchhh
Q 048518 50 PRLQHLHVTGCSEILHIVGSVRRVRCE-VFPLLESLDLINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFSM 128 (259)
Q Consensus 50 ~~L~~L~l~~c~~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 128 (259)
+.++.|+++++ .+..+... ... .+++|+.|++++. .+..+... .+..+++|++|+++++ .++.+ +...
T Consensus 39 ~~l~~L~Ls~N-~l~~l~~~----~~~~~l~~L~~L~L~~N-~i~~i~~~---~~~~l~~L~~L~Ls~N-~l~~~-~~~~ 107 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLRAE----WTPTRLTNLHSLLLSHN-HLNFISSE---AFVPVPNLRYLDLSSN-HLHTL-DEFL 107 (361)
T ss_dssp TTCSEEECCSS-CCCEECTT----SSSSCCTTCCEEECCSS-CCCEECTT---TTTTCTTCCEEECCSS-CCCEE-CTTT
T ss_pred CCCCEEECCCC-CCCccChh----hhhhcccccCEEECCCC-cCCccChh---hccCCCCCCEEECCCC-cCCcC-CHHH
Confidence 46888888877 44444121 122 5788888888775 33333211 2567788888988887 56766 4344
Q ss_pred hhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCccE
Q 048518 129 AKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTK 208 (259)
Q Consensus 129 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~ 208 (259)
+.++++|+.|+++++. +..+.. ..+..+++|+.|+++++ .++.++...+.....+++|+.
T Consensus 108 ~~~l~~L~~L~L~~N~-i~~~~~------------------~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~ 167 (361)
T 2xot_A 108 FSDLQALEVLLLYNNH-IVVVDR------------------NAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLML 167 (361)
T ss_dssp TTTCTTCCEEECCSSC-CCEECT------------------TTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCE
T ss_pred hCCCcCCCEEECCCCc-ccEECH------------------HHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCE
Confidence 4678888888888754 333211 12445788899988887 677665543211245788999
Q ss_pred EEEecCCCCCccCChhHHhhcCC--ccEEEEeccc
Q 048518 209 VTVTRCCPLKYMFSYSMANSLGQ--LRHLEIINCW 241 (259)
Q Consensus 209 L~l~~c~~l~~~~~~~~~~~l~~--L~~L~l~~c~ 241 (259)
|+++++. ++.++.. ....++. ++.|++.+++
T Consensus 168 L~L~~N~-l~~l~~~-~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 168 LDLSSNK-LKKLPLT-DLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp EECCSSC-CCCCCHH-HHHHSCHHHHTTEECCSSC
T ss_pred EECCCCC-CCccCHH-HhhhccHhhcceEEecCCC
Confidence 9998764 6666542 3445555 3778877643
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.79 E-value=1.8e-09 Score=92.61 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=39.1
Q ss_pred ccccCCcCEEeeCCCccccccCcCCC-ccc--ccCCCccEEEEecCCCCCc-----cCChhHHhhcCCccEEEEecccc
Q 048518 172 QVTFPRLEELELVSLTNIKKLWPDQF-QGM--YCCQNLTKVTVTRCCPLKY-----MFSYSMANSLGQLRHLEIINCWS 242 (259)
Q Consensus 172 ~~~l~~L~~L~l~~c~~l~~l~~~~~-~~~--~~~~~L~~L~l~~c~~l~~-----~~~~~~~~~l~~L~~L~l~~c~~ 242 (259)
+..+++|+.|++++| .++....... ..+ ..+++|++|++++|. ++. ++. .+..++++|++|++++|+-
T Consensus 240 l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~-~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 240 LKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKT-VIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp GGGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHH-HHHHHCTTCCEEECTTSBS
T ss_pred HccCCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHH-HHHhcCCCceEEEccCCcC
Confidence 445677777777776 3333211100 001 226788888888876 444 332 2235678888888888753
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.79 E-value=6.3e-08 Score=76.55 Aligned_cols=134 Identities=14% Similarity=0.144 Sum_probs=78.4
Q ss_pred CCccEEEEecCcCcceecccccccccCCCCcccEeeccccccccccccccccCcccCCCccEEEEecCCCceEecchhhh
Q 048518 50 PRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFSMA 129 (259)
Q Consensus 50 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 129 (259)
+.++.|+++++. +..+.+.. ....+++|+.|++++.. +..+... .+..+++|++|+++++ .++.+ +...+
T Consensus 32 ~~~~~L~L~~N~-l~~~~~~~---~~~~l~~L~~L~L~~N~-i~~i~~~---~~~~l~~L~~L~Ls~N-~l~~~-~~~~~ 101 (220)
T 2v70_A 32 QYTAELRLNNNE-FTVLEATG---IFKKLPQLRKINFSNNK-ITDIEEG---AFEGASGVNEILLTSN-RLENV-QHKMF 101 (220)
T ss_dssp TTCSEEECCSSC-CCEECCCC---CGGGCTTCCEEECCSSC-CCEECTT---TTTTCTTCCEEECCSS-CCCCC-CGGGG
T ss_pred CCCCEEEcCCCc-CCccCchh---hhccCCCCCEEECCCCc-CCEECHH---HhCCCCCCCEEECCCC-ccCcc-CHhHh
Confidence 456788888763 33331111 23456778888887653 3333111 2456777888888776 45555 33334
Q ss_pred hhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEE
Q 048518 130 KNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKV 209 (259)
Q Consensus 130 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L 209 (259)
.++++|+.|+++++. +..++. ..+..+++|+.|+++++ .++.+.... +..+++|+.|
T Consensus 102 ~~l~~L~~L~Ls~N~-l~~~~~------------------~~~~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L 158 (220)
T 2v70_A 102 KGLESLKTLMLRSNR-ITCVGN------------------DSFIGLSSVRLLSLYDN-QITTVAPGA---FDTLHSLSTL 158 (220)
T ss_dssp TTCSSCCEEECTTSC-CCCBCT------------------TSSTTCTTCSEEECTTS-CCCCBCTTT---TTTCTTCCEE
T ss_pred cCCcCCCEEECCCCc-CCeECH------------------hHcCCCccCCEEECCCC-cCCEECHHH---hcCCCCCCEE
Confidence 567788888777753 222211 12345677888888876 566554433 3456778888
Q ss_pred EEecCCC
Q 048518 210 TVTRCCP 216 (259)
Q Consensus 210 ~l~~c~~ 216 (259)
++++++.
T Consensus 159 ~L~~N~l 165 (220)
T 2v70_A 159 NLLANPF 165 (220)
T ss_dssp ECCSCCE
T ss_pred EecCcCC
Confidence 8877664
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.78 E-value=6.7e-08 Score=76.39 Aligned_cols=133 Identities=14% Similarity=0.145 Sum_probs=82.7
Q ss_pred CCccEEEEecCcCcceecccccccccCCCCcccEeeccccccccccccccccCcccCCCccEEEEecCCCceEecchhhh
Q 048518 50 PRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFSMA 129 (259)
Q Consensus 50 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 129 (259)
++|+.|+++++. +..+.+. ....+++|+.|++++.. +..+.. ..+..+++|++|+++++ .++.+ +...+
T Consensus 32 ~~l~~L~l~~n~-i~~i~~~----~~~~l~~L~~L~Ls~N~-i~~~~~---~~~~~l~~L~~L~Ls~N-~l~~l-~~~~f 100 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVIPPG----AFSPYKKLRRIDLSNNQ-ISELAP---DAFQGLRSLNSLVLYGN-KITEL-PKSLF 100 (220)
T ss_dssp TTCCEEECCSSC-CCEECTT----SSTTCTTCCEEECCSSC-CCEECT---TTTTTCSSCCEEECCSS-CCCCC-CTTTT
T ss_pred cCCCEEECCCCc-CCCcCHh----HhhCCCCCCEEECCCCc-CCCcCH---HHhhCCcCCCEEECCCC-cCCcc-CHhHc
Confidence 578888888773 4443111 23456788888887753 333211 12567788888888876 56655 44445
Q ss_pred hhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEE
Q 048518 130 KNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKV 209 (259)
Q Consensus 130 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L 209 (259)
.++++|+.|+++++. +..++.. .+..+++|+.|+++++ .++.+.... +..+++|+.|
T Consensus 101 ~~l~~L~~L~L~~N~-l~~~~~~------------------~~~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L 157 (220)
T 2v9t_B 101 EGLFSLQLLLLNANK-INCLRVD------------------AFQDLHNLNLLSLYDN-KLQTIAKGT---FSPLRAIQTM 157 (220)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTT------------------TTTTCTTCCEEECCSS-CCSCCCTTT---TTTCTTCCEE
T ss_pred cCCCCCCEEECCCCC-CCEeCHH------------------HcCCCCCCCEEECCCC-cCCEECHHH---HhCCCCCCEE
Confidence 678888888888753 3222111 2345778888888887 566655433 3456788888
Q ss_pred EEecCCC
Q 048518 210 TVTRCCP 216 (259)
Q Consensus 210 ~l~~c~~ 216 (259)
++++++.
T Consensus 158 ~L~~N~~ 164 (220)
T 2v9t_B 158 HLAQNPF 164 (220)
T ss_dssp ECCSSCE
T ss_pred EeCCCCc
Confidence 8877664
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.77 E-value=5e-08 Score=79.34 Aligned_cols=144 Identities=17% Similarity=0.196 Sum_probs=87.5
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
+++|+.|++.++ .++.+. .+..+++|+.|+++++. +..+ + ....+++|+.|+++++ .+..+ +
T Consensus 40 l~~L~~L~l~~n-~i~~l~----~l~~l~~L~~L~L~~N~-i~~~-~-----~l~~l~~L~~L~L~~N-~l~~l-----~ 101 (263)
T 1xeu_A 40 LSGVQNFNGDNS-NIQSLA----GMQFFTNLKELHLSHNQ-ISDL-S-----PLKDLTKLEELSVNRN-RLKNL-----N 101 (263)
T ss_dssp HTTCSEEECTTS-CCCCCT----TGGGCTTCCEEECCSSC-CCCC-G-----GGTTCSSCCEEECCSS-CCSCC-----T
T ss_pred cCcCcEEECcCC-Ccccch----HHhhCCCCCEEECCCCc-cCCC-h-----hhccCCCCCEEECCCC-ccCCc-----C
Confidence 677788877776 444442 24567788888887773 4333 1 1345677888888775 23332 1
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEE
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEEL 181 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L 181 (259)
.... ++|+.|+++++ .++.+ + ....+++|+.|+++++. +..++ .+..+++|+.|
T Consensus 102 ~~~~-~~L~~L~L~~N-~l~~~-~--~l~~l~~L~~L~Ls~N~-i~~~~--------------------~l~~l~~L~~L 155 (263)
T 1xeu_A 102 GIPS-ACLSRLFLDNN-ELRDT-D--SLIHLKNLEILSIRNNK-LKSIV--------------------MLGFLSKLEVL 155 (263)
T ss_dssp TCCC-SSCCEEECCSS-CCSBS-G--GGTTCTTCCEEECTTSC-CCBCG--------------------GGGGCTTCCEE
T ss_pred cccc-CcccEEEccCC-ccCCC-h--hhcCcccccEEECCCCc-CCCCh--------------------HHccCCCCCEE
Confidence 1222 77888888776 45544 2 23567788888777653 32221 23456778888
Q ss_pred eeCCCccccccCcCCCcccccCCCccEEEEecCC
Q 048518 182 ELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCC 215 (259)
Q Consensus 182 ~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~ 215 (259)
+++++ .++.+ .. +..+++|+.|++++++
T Consensus 156 ~L~~N-~i~~~--~~---l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 156 DLHGN-EITNT--GG---LTRLKKVNWIDLTGQK 183 (263)
T ss_dssp ECTTS-CCCBC--TT---STTCCCCCEEEEEEEE
T ss_pred ECCCC-cCcch--HH---hccCCCCCEEeCCCCc
Confidence 88776 55554 11 4456778888877754
No 104
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.77 E-value=1.9e-08 Score=91.12 Aligned_cols=62 Identities=13% Similarity=0.093 Sum_probs=40.5
Q ss_pred ccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhc-CCccEEEEec
Q 048518 172 QVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSL-GQLRHLEIIN 239 (259)
Q Consensus 172 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l-~~L~~L~l~~ 239 (259)
+..+++|+.|+++++ .++.+.... ...+++|+.|+++++. ++.+++.. ...+ ++|++|++++
T Consensus 514 f~~l~~L~~L~Ls~N-~l~~l~~~~---~~~l~~L~~L~Ls~N~-l~~~~~~~-l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 514 FNSLSSLQVLNMSHN-NFFSLDTFP---YKCLNSLQVLDYSLNH-IMTSKKQE-LQHFPSSLAFLNLTQ 576 (635)
T ss_dssp TTTCTTCCEEECTTS-CCCBCCCGG---GTTCTTCCEEECTTSC-CCBCCSSC-TTCCCTTCCEEECTT
T ss_pred HcCCCCCCEEECCCC-cCCCCChhH---HhCCCCCCEEECCCCc-CCCCCHHH-HHhhhCcCCEEEeeC
Confidence 456788888888877 666665443 4457888888887765 45554432 3344 5788888865
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.77 E-value=3.5e-08 Score=80.26 Aligned_cols=167 Identities=14% Similarity=0.146 Sum_probs=117.2
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
+.++..+.+.+. .++++. . +..+++|+.|+++++ .+..+ + ....+++|+.|+++++ .+..+.
T Consensus 18 l~~l~~l~l~~~-~i~~~~-~---~~~l~~L~~L~l~~n-~i~~l-~-----~l~~l~~L~~L~L~~N-~i~~~~----- 79 (263)
T 1xeu_A 18 LANAVKQNLGKQ-SVTDLV-S---QKELSGVQNFNGDNS-NIQSL-A-----GMQFFTNLKELHLSHN-QISDLS----- 79 (263)
T ss_dssp HHHHHHHHHTCS-CTTSEE-C---HHHHTTCSEEECTTS-CCCCC-T-----TGGGCTTCCEEECCSS-CCCCCG-----
T ss_pred HHHHHHHHhcCC-Cccccc-c---hhhcCcCcEEECcCC-Ccccc-h-----HHhhCCCCCEEECCCC-ccCCCh-----
Confidence 556666666654 344443 1 447899999999988 45544 2 2345799999999886 344332
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEE
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEEL 181 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L 181 (259)
.+..+++|+.|+++++ .++.+ +.. .. ++|+.|+++++. +..++ .+..+++|+.|
T Consensus 80 ~l~~l~~L~~L~L~~N-~l~~l-~~~--~~-~~L~~L~L~~N~-l~~~~--------------------~l~~l~~L~~L 133 (263)
T 1xeu_A 80 PLKDLTKLEELSVNRN-RLKNL-NGI--PS-ACLSRLFLDNNE-LRDTD--------------------SLIHLKNLEIL 133 (263)
T ss_dssp GGTTCSSCCEEECCSS-CCSCC-TTC--CC-SSCCEEECCSSC-CSBSG--------------------GGTTCTTCCEE
T ss_pred hhccCCCCCEEECCCC-ccCCc-Ccc--cc-CcccEEEccCCc-cCCCh--------------------hhcCcccccEE
Confidence 1568899999999987 56655 321 22 889999999863 33321 24468999999
Q ss_pred eeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEecccc
Q 048518 182 ELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWS 242 (259)
Q Consensus 182 ~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 242 (259)
+++++ .++.+.. +..+++|+.|+++++. ++.+. ....+++|++|++++++-
T Consensus 134 ~Ls~N-~i~~~~~-----l~~l~~L~~L~L~~N~-i~~~~---~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 134 SIRNN-KLKSIVM-----LGFLSKLEVLDLHGNE-ITNTG---GLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp ECTTS-CCCBCGG-----GGGCTTCCEEECTTSC-CCBCT---TSTTCCCCCEEEEEEEEE
T ss_pred ECCCC-cCCCChH-----HccCCCCCEEECCCCc-CcchH---HhccCCCCCEEeCCCCcc
Confidence 99998 6776631 5578999999999876 55552 456789999999998753
No 106
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.76 E-value=4.2e-08 Score=88.92 Aligned_cols=113 Identities=14% Similarity=0.170 Sum_probs=76.1
Q ss_pred ccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEee
Q 048518 104 QSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELEL 183 (259)
Q Consensus 104 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l 183 (259)
..+++++.++++.+ .+....+ .....+++|+.|++.++.....+.. ..+..+++|+.|++
T Consensus 442 ~~l~~l~~l~ls~n-~l~~~~~-~~~~~~~~L~~L~Ls~N~~~~~~~~------------------~~~~~l~~L~~L~L 501 (635)
T 4g8a_A 442 LSLRNLIYLDISHT-HTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLP------------------DIFTELRNLTFLDL 501 (635)
T ss_dssp TTCTTCCEEECTTS-CCEECCT-TTTTTCTTCCEEECTTCEEGGGEEC------------------SCCTTCTTCCEEEC
T ss_pred cccccccccccccc-ccccccc-cccccchhhhhhhhhhcccccccCc------------------hhhhhccccCEEEC
Confidence 45556666666554 3444422 2334566677777666544432211 13456899999999
Q ss_pred CCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEecccc
Q 048518 184 VSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWS 242 (259)
Q Consensus 184 ~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 242 (259)
+++ .++.+.... +..+++|+.|+++++. ++.++... ...+++|++|+++++..
T Consensus 502 s~N-~L~~l~~~~---f~~l~~L~~L~Ls~N~-l~~l~~~~-~~~l~~L~~L~Ls~N~l 554 (635)
T 4g8a_A 502 SQC-QLEQLSPTA---FNSLSSLQVLNMSHNN-FFSLDTFP-YKCLNSLQVLDYSLNHI 554 (635)
T ss_dssp TTS-CCCEECTTT---TTTCTTCCEEECTTSC-CCBCCCGG-GTTCTTCCEEECTTSCC
T ss_pred CCC-ccCCcChHH---HcCCCCCCEEECCCCc-CCCCChhH-HhCCCCCCEEECCCCcC
Confidence 998 788776554 4578999999999874 77776643 56789999999998753
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.74 E-value=8.6e-08 Score=74.86 Aligned_cols=157 Identities=13% Similarity=0.071 Sum_probs=97.3
Q ss_pred HhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR 101 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 101 (259)
.+++++|++.++ .++.+... . +..+++|+.|+++++ .+..+ +.. ....+++|++|+++++ .+..+.. .
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~-~-~~~l~~L~~L~l~~n-~l~~~-~~~---~~~~l~~L~~L~Ls~n-~l~~~~~---~ 94 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPNG-V-FDELTSLTQLYLGGN-KLQSL-PNG---VFNKLTSLTYLNLSTN-QLQSLPN---G 94 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCTT-T-TTTCTTCSEEECCSS-CCCCC-CTT---TTTTCTTCCEEECCSS-CCCCCCT---T
T ss_pred CCCCcEEEcCCC-ccCcCChh-h-hcccccCcEEECCCC-ccCcc-Chh---hcCCCCCcCEEECCCC-cCCccCH---h
Confidence 567888888887 34444322 1 457889999999887 34433 111 2345788899988876 2333311 1
Q ss_pred CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEE
Q 048518 102 EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEEL 181 (259)
Q Consensus 102 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L 181 (259)
.+..+++|++|+++++ .++.+ +...+..+++|+.|+++++. +..++.. .+..+++|+.|
T Consensus 95 ~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~------------------~~~~l~~L~~L 153 (208)
T 2o6s_A 95 VFDKLTQLKELALNTN-QLQSL-PDGVFDKLTQLKDLRLYQNQ-LKSVPDG------------------VFDRLTSLQYI 153 (208)
T ss_dssp TTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CSCCCTT------------------TTTTCTTCCEE
T ss_pred HhcCccCCCEEEcCCC-cCccc-CHhHhccCCcCCEEECCCCc-cceeCHH------------------HhccCCCccEE
Confidence 1457888999999887 56655 43344678889999888863 3332211 13457888888
Q ss_pred eeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCC
Q 048518 182 ELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFS 222 (259)
Q Consensus 182 ~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 222 (259)
++.+++- ...+++|+.|+++.+..-..+|.
T Consensus 154 ~l~~N~~-----------~~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 154 WLHDNPW-----------DCTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp ECCSCCB-----------CCCTTTTHHHHHHHHHCTTTBBC
T ss_pred EecCCCe-----------ecCCCCHHHHHHHHHhCCceeec
Confidence 8888721 11356777777766554444543
No 108
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.72 E-value=5.5e-10 Score=95.84 Aligned_cols=65 Identities=15% Similarity=0.106 Sum_probs=39.1
Q ss_pred CccccCCcCEEeeCCCcccc-----ccCcCCCcccccCCCccEEEEecCCCCCccCChhHHh-----hcCCccEEEEecc
Q 048518 171 DQVTFPRLEELELVSLTNIK-----KLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMAN-----SLGQLRHLEIINC 240 (259)
Q Consensus 171 ~~~~l~~L~~L~l~~c~~l~-----~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~-----~l~~L~~L~l~~c 240 (259)
.+..+++|+.|+++++ .++ .+.. .+..+++|++|++++|. ++......++. .+++|++|++++|
T Consensus 211 ~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~----~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n 284 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDN-TFTHLGSSALAI----ALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYN 284 (386)
T ss_dssp TGGGCTTCCEEECCSS-CCHHHHHHHHHH----HGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred HhhcCCCccEEECcCC-CCCcHHHHHHHH----HHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCC
Confidence 4456788888888877 342 2211 13456788888888776 44432111111 2677888888877
Q ss_pred c
Q 048518 241 W 241 (259)
Q Consensus 241 ~ 241 (259)
.
T Consensus 285 ~ 285 (386)
T 2ca6_A 285 E 285 (386)
T ss_dssp C
T ss_pred c
Confidence 4
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.72 E-value=1.6e-07 Score=84.50 Aligned_cols=179 Identities=16% Similarity=0.085 Sum_probs=110.6
Q ss_pred hccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeeccccccccccccccccC
Q 048518 23 KRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLRE 102 (259)
Q Consensus 23 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 102 (259)
.+++.|++.++ +++.++.. -+++|+.|+++++. +..+ + ..+++|+.|+++++ .+..+ |.
T Consensus 59 ~~L~~L~Ls~n-~L~~lp~~-----l~~~L~~L~Ls~N~-l~~i-------p-~~l~~L~~L~Ls~N-~l~~i-----p~ 117 (571)
T 3cvr_A 59 NQFSELQLNRL-NLSSLPDN-----LPPQITVLEITQNA-LISL-------P-ELPASLEYLDACDN-RLSTL-----PE 117 (571)
T ss_dssp TTCSEEECCSS-CCSCCCSC-----CCTTCSEEECCSSC-CSCC-------C-CCCTTCCEEECCSS-CCSCC-----CC
T ss_pred CCccEEEeCCC-CCCccCHh-----HcCCCCEEECcCCC-Cccc-------c-cccCCCCEEEccCC-CCCCc-----ch
Confidence 48888988877 35544322 24789999998873 4444 2 34688888888876 34333 21
Q ss_pred cccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEe
Q 048518 103 DQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELE 182 (259)
Q Consensus 103 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~ 182 (259)
...+|+.|+++++ .++.+ |. .+++|+.|+++++. +..++.....+..+.-..+.+..++.+ . ++|+.|+
T Consensus 118 --l~~~L~~L~Ls~N-~l~~l-p~----~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~L~~lp~l-~-~~L~~L~ 186 (571)
T 3cvr_A 118 --LPASLKHLDVDNN-QLTML-PE----LPALLEYINADNNQ-LTMLPELPTSLEVLSVRNNQLTFLPEL-P-ESLEALD 186 (571)
T ss_dssp --CCTTCCEEECCSS-CCSCC-CC----CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCC-C-TTCCEEE
T ss_pred --hhcCCCEEECCCC-cCCCC-CC----cCccccEEeCCCCc-cCcCCCcCCCcCEEECCCCCCCCcchh-h-CCCCEEE
Confidence 1127888888876 45554 43 46788888887754 333433111222222222333333332 2 8899999
Q ss_pred eCCCccccccCcCCCcccccCCCc-------cEEEEecCCCCCccCChhHHhhcCCccEEEEecccccc
Q 048518 183 LVSLTNIKKLWPDQFQGMYCCQNL-------TKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWSME 244 (259)
Q Consensus 183 l~~c~~l~~l~~~~~~~~~~~~~L-------~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 244 (259)
++++ .++.++. .. .+| +.|+++++. ++.+|. .+..+++|++|++++++.-.
T Consensus 187 Ls~N-~L~~lp~-~~------~~L~~~~~~L~~L~Ls~N~-l~~lp~--~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 187 VSTN-LLESLPA-VP------VRNHHSEETEIFFRCRENR-ITHIPE--NILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CCSS-CCSSCCC-CC--------------CCEEEECCSSC-CCCCCG--GGGGSCTTEEEECCSSSCCH
T ss_pred CcCC-CCCchhh-HH------HhhhcccccceEEecCCCc-ceecCH--HHhcCCCCCEEEeeCCcCCC
Confidence 9988 6776654 21 256 999998874 677766 34568999999999986543
No 110
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.71 E-value=1e-09 Score=96.13 Aligned_cols=11 Identities=27% Similarity=0.181 Sum_probs=6.8
Q ss_pred hccceeeeccc
Q 048518 23 KRTEDLRLYSL 33 (259)
Q Consensus 23 ~~L~~L~l~~~ 33 (259)
++|++|++.++
T Consensus 56 ~~L~~L~Ls~n 66 (461)
T 1z7x_W 56 PALAELNLRSN 66 (461)
T ss_dssp TTCCEEECTTC
T ss_pred CCcCEEeCCCC
Confidence 56666666654
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.69 E-value=3.1e-09 Score=90.43 Aligned_cols=64 Identities=11% Similarity=0.041 Sum_probs=40.0
Q ss_pred CCcCEEeeCCCccccccCcCCCc-cccc-CCCccEEEEecCCCCCccCChh---HHhhcCCccEEEEeccc
Q 048518 176 PRLEELELVSLTNIKKLWPDQFQ-GMYC-CQNLTKVTVTRCCPLKYMFSYS---MANSLGQLRHLEIINCW 241 (259)
Q Consensus 176 ~~L~~L~l~~c~~l~~l~~~~~~-~~~~-~~~L~~L~l~~c~~l~~~~~~~---~~~~l~~L~~L~l~~c~ 241 (259)
++|+.|+++++ .++........ .+.. .++|++|+++++. ++..+... ....+++|++|++++|.
T Consensus 196 ~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 196 ASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp TTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 48999999888 45542221110 1222 3589999998875 55554322 23556889999999885
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.69 E-value=1.2e-07 Score=74.96 Aligned_cols=38 Identities=13% Similarity=0.208 Sum_probs=17.5
Q ss_pred ccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEec
Q 048518 104 QSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNC 143 (259)
Q Consensus 104 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 143 (259)
..+++|+.|+++++ .++.+.+. .+.++++|+.|+++++
T Consensus 101 ~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 101 EGLFSLQLLLLNAN-KINCLRVD-AFQDLHNLNLLSLYDN 138 (220)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS
T ss_pred cCCCCCCEEECCCC-CCCEeCHH-HcCCCCCCCEEECCCC
Confidence 34455555555554 33333222 2234555555555543
No 113
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.67 E-value=1.4e-08 Score=75.01 Aligned_cols=83 Identities=14% Similarity=0.164 Sum_probs=37.8
Q ss_pred CCCCccEEEEecCcCc-ceecccccccccCCCCcccEeeccccccccccccccccCcccCCCccEEEEecCCCceEecch
Q 048518 48 GFPRLQHLHVTGCSEI-LHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSF 126 (259)
Q Consensus 48 ~l~~L~~L~l~~c~~l-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 126 (259)
..++|+.|++++|... ..+ +. ....+++|+.|+++++ .+..+ +.+..+++|+.|+++++ .++...|.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~-~~----~~~~l~~L~~L~l~~n-~l~~~-----~~~~~l~~L~~L~Ls~n-~i~~~~~~ 82 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKL-EG----LTDEFEELEFLSTINV-GLTSI-----ANLPKLNKLKKLELSDN-RVSGGLEV 82 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBC-CS----CCTTCTTCCEEECTTS-CCCCC-----TTCCCCTTCCEEECCSS-CCCSCTHH
T ss_pred CCccCeEEEccCCcCChhHH-HH----HHhhcCCCcEEECcCC-CCCCc-----hhhhcCCCCCEEECCCC-cccchHHH
Confidence 3456666666666322 122 11 2234556666666554 23222 11345556666666555 23332122
Q ss_pred hhhhhcCCCcEEEEEec
Q 048518 127 SMAKNLLGLQKVEVVNC 143 (259)
Q Consensus 127 ~~~~~l~~L~~L~l~~c 143 (259)
....+++|+.|+++++
T Consensus 83 -~~~~l~~L~~L~ls~N 98 (149)
T 2je0_A 83 -LAEKCPNLTHLNLSGN 98 (149)
T ss_dssp -HHHHCTTCCEEECTTS
T ss_pred -HhhhCCCCCEEECCCC
Confidence 2233555555555443
No 114
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.66 E-value=2.7e-08 Score=73.54 Aligned_cols=130 Identities=20% Similarity=0.182 Sum_probs=67.5
Q ss_pred CCcccEeecccccccccccccccc-CcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCC
Q 048518 78 FPLLESLDLINLTNLETICYSQLR-EDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEK 156 (259)
Q Consensus 78 ~~~L~~L~l~~~~~l~~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 156 (259)
.++|+.|+++++. +.. ..+| .+..+++|+.|+++++ .++.+ .....+++|+.|+++++.-...++.
T Consensus 16 ~~~l~~L~l~~n~-l~~---~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~----- 82 (149)
T 2je0_A 16 PSDVKELVLDNSR-SNE---GKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNRVSGGLEV----- 82 (149)
T ss_dssp GGGCSEEECTTCB-CBT---TBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSCCCSCTHH-----
T ss_pred CccCeEEEccCCc-CCh---hHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCcccchHHH-----
Confidence 4667777776653 220 0111 2355667777777666 44433 2234566777777766543221111
Q ss_pred CcccCCccccccCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCCh--hHHhhcCCccE
Q 048518 157 PTTTQGFTEINAEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSY--SMANSLGQLRH 234 (259)
Q Consensus 157 ~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~l~~L~~ 234 (259)
....+++|+.|+++++ .++.+.... .+..+++|++|++++++ ++..+.. .....+++|++
T Consensus 83 --------------~~~~l~~L~~L~ls~N-~i~~~~~~~--~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~ 144 (149)
T 2je0_A 83 --------------LAEKCPNLTHLNLSGN-KIKDLSTIE--PLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTY 144 (149)
T ss_dssp --------------HHHHCTTCCEEECTTS-CCCSHHHHG--GGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCE
T ss_pred --------------HhhhCCCCCEEECCCC-cCCChHHHH--HHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCccc
Confidence 1223566777777766 344432101 13456677777776663 4555441 24556667776
Q ss_pred EEEe
Q 048518 235 LEII 238 (259)
Q Consensus 235 L~l~ 238 (259)
|+++
T Consensus 145 L~l~ 148 (149)
T 2je0_A 145 LDGY 148 (149)
T ss_dssp ETTB
T ss_pred ccCC
Confidence 6654
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.66 E-value=2.9e-07 Score=72.70 Aligned_cols=60 Identities=15% Similarity=0.123 Sum_probs=24.9
Q ss_pred cCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEecc
Q 048518 175 FPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINC 240 (259)
Q Consensus 175 l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 240 (259)
+++|+.|+++++ .++.+.... +..+++|+.|+++++. ++.++.. ....+++|++|++.++
T Consensus 104 l~~L~~L~Ls~N-~l~~~~~~~---~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 104 LESLKTLMLRSN-RITCVGNDS---FIGLSSVRLLSLYDNQ-ITTVAPG-AFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CSSCCEEECTTS-CCCCBCTTS---STTCTTCSEEECTTSC-CCCBCTT-TTTTCTTCCEEECCSC
T ss_pred CcCCCEEECCCC-cCCeECHhH---cCCCccCCEEECCCCc-CCEECHH-HhcCCCCCCEEEecCc
Confidence 445555555544 333332222 2234455555554432 3333221 2334445555555443
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.64 E-value=2.6e-07 Score=78.51 Aligned_cols=135 Identities=16% Similarity=0.095 Sum_probs=95.2
Q ss_pred CCCcccEeeccccccccccccccccCcc-cCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCC
Q 048518 77 VFPLLESLDLINLTNLETICYSQLREDQ-SFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDME 155 (259)
Q Consensus 77 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 155 (259)
..+.++.|++++. .+..+... .+. .+++|+.|+++++ .++.+.+. .+.++++|+.|+++++. +..++..
T Consensus 37 ~~~~l~~L~Ls~N-~l~~l~~~---~~~~~l~~L~~L~L~~N-~i~~i~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~--- 106 (361)
T 2xot_A 37 LPSYTALLDLSHN-NLSRLRAE---WTPTRLTNLHSLLLSHN-HLNFISSE-AFVPVPNLRYLDLSSNH-LHTLDEF--- 106 (361)
T ss_dssp CCTTCSEEECCSS-CCCEECTT---SSSSCCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSSC-CCEECTT---
T ss_pred CCCCCCEEECCCC-CCCccChh---hhhhcccccCEEECCCC-cCCccChh-hccCCCCCCEEECCCCc-CCcCCHH---
Confidence 3467899999885 34443211 133 7899999999987 67777443 44689999999999864 5444321
Q ss_pred CCcccCCccccccCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHH--hhcCCcc
Q 048518 156 KPTTTQGFTEINAEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMA--NSLGQLR 233 (259)
Q Consensus 156 ~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~l~~L~ 233 (259)
.+..+++|+.|+++++ .++.+.... +..+++|+.|+++++. ++.++...+. ..+++|+
T Consensus 107 ---------------~~~~l~~L~~L~L~~N-~i~~~~~~~---~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 107 ---------------LFSDLQALEVLLLYNN-HIVVVDRNA---FEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLM 166 (361)
T ss_dssp ---------------TTTTCTTCCEEECCSS-CCCEECTTT---TTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCC
T ss_pred ---------------HhCCCcCCCEEECCCC-cccEECHHH---hCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCC
Confidence 2446899999999998 677665444 4568999999999875 6777653221 4689999
Q ss_pred EEEEeccc
Q 048518 234 HLEIINCW 241 (259)
Q Consensus 234 ~L~l~~c~ 241 (259)
+|+++++.
T Consensus 167 ~L~L~~N~ 174 (361)
T 2xot_A 167 LLDLSSNK 174 (361)
T ss_dssp EEECCSSC
T ss_pred EEECCCCC
Confidence 99999874
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.63 E-value=2.5e-07 Score=73.54 Aligned_cols=131 Identities=18% Similarity=0.142 Sum_probs=62.1
Q ss_pred CcccEeeccccccccccccccccCcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCc
Q 048518 79 PLLESLDLINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPT 158 (259)
Q Consensus 79 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 158 (259)
++|+.|+++++. +..+.. ..+..+++|+.|+++++ .++.+ +...+.++++|+.|+++++ .+..++..
T Consensus 40 ~~L~~L~Ls~n~-i~~~~~---~~~~~l~~L~~L~L~~N-~l~~i-~~~~~~~l~~L~~L~Ls~N-~l~~l~~~------ 106 (229)
T 3e6j_A 40 TNAQILYLHDNQ-ITKLEP---GVFDSLINLKELYLGSN-QLGAL-PVGVFDSLTQLTVLDLGTN-QLTVLPSA------ 106 (229)
T ss_dssp TTCSEEECCSSC-CCCCCT---TTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTT------
T ss_pred CCCCEEEcCCCc-cCccCH---HHhhCccCCcEEECCCC-CCCCc-ChhhcccCCCcCEEECCCC-cCCccChh------
Confidence 556666665542 222211 01345566666666655 34444 3233345566666666554 23222110
Q ss_pred ccCCccccccCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEe
Q 048518 159 TTQGFTEINAEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEII 238 (259)
Q Consensus 159 l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 238 (259)
.+..+++|+.|+++++ .++.++.. +..+++|+.|+++++ .++.++. .....+++|++|++.
T Consensus 107 ------------~~~~l~~L~~L~Ls~N-~l~~lp~~----~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 107 ------------VFDRLVHLKELFMCCN-KLTELPRG----IERLTHLTHLALDQN-QLKSIPH-GAFDRLSSLTHAYLF 167 (229)
T ss_dssp ------------TTTTCTTCCEEECCSS-CCCSCCTT----GGGCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECT
T ss_pred ------------HhCcchhhCeEeccCC-cccccCcc----cccCCCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEee
Confidence 1223556666666655 44444221 234566666666554 3444443 223455566666665
Q ss_pred ccc
Q 048518 239 NCW 241 (259)
Q Consensus 239 ~c~ 241 (259)
+++
T Consensus 168 ~N~ 170 (229)
T 3e6j_A 168 GNP 170 (229)
T ss_dssp TSC
T ss_pred CCC
Confidence 543
No 118
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.61 E-value=2.1e-09 Score=94.17 Aligned_cols=210 Identities=12% Similarity=0.071 Sum_probs=95.2
Q ss_pred Hhccceeeeccccccceeccc-cCC--CCCCCCccEEEEecCcCcceeccc-ccccccCCCCcccEeecccccccccccc
Q 048518 22 LKRTEDLRLYSLTGVQNVVHE-LDD--GEGFPRLQHLHVTGCSEILHIVGS-VRRVRCEVFPLLESLDLINLTNLETICY 97 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~-~~~--~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 97 (259)
+++|++|++.++. +.+.... +.. ....++|+.|++++|. +... .. ........+++|+.|+++++. +.....
T Consensus 169 ~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~-~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~ 244 (461)
T 1z7x_W 169 KPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCG-VTSD-NCRDLCGIVASKASLRELALGSNK-LGDVGM 244 (461)
T ss_dssp CTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTT-HHHHHHHHHHHCTTCCEEECCSSB-CHHHHH
T ss_pred CCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCC-CcHH-HHHHHHHHHHhCCCccEEeccCCc-CChHHH
Confidence 4777778777764 3222111 000 0124577777777773 2210 00 000012235677777776652 322211
Q ss_pred cccc--CcccCCCccEEEEecCCCceEec----chhhhhhcCCCcEEEEEeccCcce----eccc----CCCCCcccCCc
Q 048518 98 SQLR--EDQSFSNLRIIYVYSCPKLKYLF----SFSMAKNLLGLQKVEVVNCNKLKM----MIGP----DMEKPTTTQGF 163 (259)
Q Consensus 98 ~~~~--~~~~~~~L~~L~l~~c~~l~~~~----~~~~~~~l~~L~~L~l~~c~~l~~----~~~~----~~~~~~l~~~~ 163 (259)
..+. -...+++|++|++++| .++... +. ....+++|+.|+++++.--.. +... ...+..+.-..
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCR-VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHH-HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHH-HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 1110 0123566666766666 344321 11 123466666666665532100 0000 00111111000
Q ss_pred cccc------cCCCccccCCcCEEeeCCCccccccCcCCCc-cc-ccCCCccEEEEecCCCCCc-----cCChhHHhhcC
Q 048518 164 TEIN------AEDDQVTFPRLEELELVSLTNIKKLWPDQFQ-GM-YCCQNLTKVTVTRCCPLKY-----MFSYSMANSLG 230 (259)
Q Consensus 164 ~~~~------~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~-~~-~~~~~L~~L~l~~c~~l~~-----~~~~~~~~~l~ 230 (259)
..+. ....+..+++|+.|+++++ .++........ .+ ...++|++|++++|. ++. ++. ....++
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~--~l~~~~ 398 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAA--TLLANH 398 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHH--HHHHCC
T ss_pred CCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHH--HHHhCC
Confidence 0110 1112334578888888877 44433211110 01 114688888888874 452 322 345678
Q ss_pred CccEEEEeccc
Q 048518 231 QLRHLEIINCW 241 (259)
Q Consensus 231 ~L~~L~l~~c~ 241 (259)
+|++|++++|+
T Consensus 399 ~L~~L~l~~N~ 409 (461)
T 1z7x_W 399 SLRELDLSNNC 409 (461)
T ss_dssp CCCEEECCSSS
T ss_pred CccEEECCCCC
Confidence 88888888874
No 119
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.60 E-value=2.9e-08 Score=75.36 Aligned_cols=93 Identities=15% Similarity=0.188 Sum_probs=70.0
Q ss_pred CCccEEEEecCcCcceecccccccccCCCCcccEeeccccccccccccccccCc-ccCCCccEEEEecCCCceEecchhh
Q 048518 50 PRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLRED-QSFSNLRIIYVYSCPKLKYLFSFSM 128 (259)
Q Consensus 50 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~ 128 (259)
..|+.|++++|. +... ... ....+++|+.|++++|..+.+.....+... ...++|++|++++|+++++.....+
T Consensus 61 ~~L~~LDLs~~~-Itd~---GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L 135 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSI---GFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL 135 (176)
T ss_dssp CCEEEEEEESCC-CCGG---GGG-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred ceEeEEeCcCCC-ccHH---HHH-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH
Confidence 369999999996 4421 111 335689999999999999988765544411 1246899999999999998655444
Q ss_pred hhhcCCCcEEEEEeccCcce
Q 048518 129 AKNLLGLQKVEVVNCNKLKM 148 (259)
Q Consensus 129 ~~~l~~L~~L~l~~c~~l~~ 148 (259)
..+++|+.|++++|+.+..
T Consensus 136 -~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 136 -HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp -GGCTTCCEEEEESCTTCCC
T ss_pred -hcCCCCCEEECCCCCCCCc
Confidence 5799999999999998854
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.59 E-value=2e-07 Score=78.11 Aligned_cols=57 Identities=12% Similarity=0.072 Sum_probs=32.5
Q ss_pred cccCCcCEEeeCCCccccccCcCCCcccccCCCcc-EEEEecCCCCCccCChhHHhhcCCccEEEE
Q 048518 173 VTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLT-KVTVTRCCPLKYMFSYSMANSLGQLRHLEI 237 (259)
Q Consensus 173 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~-~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l 237 (259)
..+++|+.+++.+. ++.+...+ ...|++|+ .+++.+ +++.++... ...|++|+++++
T Consensus 247 ~~~~~L~~l~l~~n--i~~I~~~a---F~~~~~L~~~l~l~~--~l~~I~~~a-F~~c~~L~~l~l 304 (329)
T 3sb4_A 247 AQKKYLLKIKLPHN--LKTIGQRV---FSNCGRLAGTLELPA--SVTAIEFGA-FMGCDNLRYVLA 304 (329)
T ss_dssp TTCTTCCEEECCTT--CCEECTTT---TTTCTTCCEEEEECT--TCCEECTTT-TTTCTTEEEEEE
T ss_pred hCCCCCCEEECCcc--cceehHHH---hhCChhccEEEEEcc--cceEEchhh-hhCCccCCEEEe
Confidence 34556666666552 55554444 34566666 666655 556665433 456667777766
No 121
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.56 E-value=3.5e-08 Score=74.89 Aligned_cols=63 Identities=10% Similarity=0.266 Sum_probs=31.2
Q ss_pred cccEeeccccccccccccccccCcccCCCccEEEEecCCCceEecchhhhh---hcCCCcEEEEEeccCc
Q 048518 80 LLESLDLINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFSMAK---NLLGLQKVEVVNCNKL 146 (259)
Q Consensus 80 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~---~l~~L~~L~l~~c~~l 146 (259)
.|+.|++++|. +.+..... +..+++|++|++++|..+++.....+.+ .+++|++|++++|+++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~---L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDH---MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGG---GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred eEeEEeCcCCC-ccHHHHHH---hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence 45666666654 44433222 2355666666666665555443333322 1234555555555554
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.55 E-value=1.2e-07 Score=72.19 Aligned_cols=82 Identities=13% Similarity=0.203 Sum_probs=41.4
Q ss_pred CCCCccEEEEecCcCcceecccccccccCCCCcccEeeccccccccccccccccCcccCCCccEEEEecCCCceEecchh
Q 048518 48 GFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFS 127 (259)
Q Consensus 48 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 127 (259)
.+++|+.|+++++ .+..+ +. .....++|+.|+++++ .+..+ +.+..+++|+.|+++++ .++.+ +..
T Consensus 17 ~~~~L~~L~l~~n-~l~~i-~~----~~~~~~~L~~L~Ls~N-~l~~~-----~~l~~l~~L~~L~Ls~N-~l~~~-~~~ 82 (176)
T 1a9n_A 17 NAVRDRELDLRGY-KIPVI-EN----LGATLDQFDAIDFSDN-EIRKL-----DGFPLLRRLKTLLVNNN-RICRI-GEG 82 (176)
T ss_dssp CTTSCEEEECTTS-CCCSC-CC----GGGGTTCCSEEECCSS-CCCEE-----CCCCCCSSCCEEECCSS-CCCEE-CSC
T ss_pred CcCCceEEEeeCC-CCchh-HH----hhhcCCCCCEEECCCC-CCCcc-----cccccCCCCCEEECCCC-ccccc-Ccc
Confidence 4566777777666 23322 11 1112346666666654 22222 12445666666666665 35544 322
Q ss_pred hhhhcCCCcEEEEEec
Q 048518 128 MAKNLLGLQKVEVVNC 143 (259)
Q Consensus 128 ~~~~l~~L~~L~l~~c 143 (259)
.+..+++|+.|+++++
T Consensus 83 ~~~~l~~L~~L~L~~N 98 (176)
T 1a9n_A 83 LDQALPDLTELILTNN 98 (176)
T ss_dssp HHHHCTTCCEEECCSC
T ss_pred hhhcCCCCCEEECCCC
Confidence 3345566666666554
No 123
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.55 E-value=8.7e-09 Score=87.66 Aligned_cols=65 Identities=6% Similarity=-0.099 Sum_probs=37.7
Q ss_pred CCcCEEeeCCCccccccCcCCC-cccccCCCccEEEEecCC--CCCccCChh---HHhhcCCccEEEEeccc
Q 048518 176 PRLEELELVSLTNIKKLWPDQF-QGMYCCQNLTKVTVTRCC--PLKYMFSYS---MANSLGQLRHLEIINCW 241 (259)
Q Consensus 176 ~~L~~L~l~~c~~l~~l~~~~~-~~~~~~~~L~~L~l~~c~--~l~~~~~~~---~~~~l~~L~~L~l~~c~ 241 (259)
++|+.|+++++ .++....... .....+++|+.|++++|. .+....... ....+++|+++++++++
T Consensus 225 ~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 225 NHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 58999999887 5555433111 113456889999998886 121110001 22355667788887775
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.53 E-value=1.5e-07 Score=71.54 Aligned_cols=135 Identities=17% Similarity=0.097 Sum_probs=94.3
Q ss_pred CCCCcccEeeccccccccccccccccCccc-CCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCC
Q 048518 76 EVFPLLESLDLINLTNLETICYSQLREDQS-FSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDM 154 (259)
Q Consensus 76 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~-~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 154 (259)
..+++|+.|+++++ .+..+ +.... .++|+.|+++++ .++.+ + .+..+++|+.|+++++. +..++..
T Consensus 16 ~~~~~L~~L~l~~n-~l~~i-----~~~~~~~~~L~~L~Ls~N-~l~~~-~--~l~~l~~L~~L~Ls~N~-l~~~~~~-- 82 (176)
T 1a9n_A 16 TNAVRDRELDLRGY-KIPVI-----ENLGATLDQFDAIDFSDN-EIRKL-D--GFPLLRRLKTLLVNNNR-ICRIGEG-- 82 (176)
T ss_dssp ECTTSCEEEECTTS-CCCSC-----CCGGGGTTCCSEEECCSS-CCCEE-C--CCCCCSSCCEEECCSSC-CCEECSC--
T ss_pred CCcCCceEEEeeCC-CCchh-----HHhhhcCCCCCEEECCCC-CCCcc-c--ccccCCCCCEEECCCCc-ccccCcc--
Confidence 34689999999886 34433 21233 459999999998 56665 2 24678999999999864 4343311
Q ss_pred CCCcccCCccccccCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCCh--hHHhhcCCc
Q 048518 155 EKPTTTQGFTEINAEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSY--SMANSLGQL 232 (259)
Q Consensus 155 ~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~l~~L 232 (259)
....+++|+.|+++++ .++.++... .+..+++|+.|++++++ +..++.. .....+++|
T Consensus 83 ----------------~~~~l~~L~~L~L~~N-~i~~~~~~~--~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L 142 (176)
T 1a9n_A 83 ----------------LDQALPDLTELILTNN-SLVELGDLD--PLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQV 142 (176)
T ss_dssp ----------------HHHHCTTCCEEECCSC-CCCCGGGGG--GGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTC
T ss_pred ----------------hhhcCCCCCEEECCCC-cCCcchhhH--hhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCcc
Confidence 1246899999999998 566654311 15578999999999987 4566552 136789999
Q ss_pred cEEEEeccccc
Q 048518 233 RHLEIINCWSM 243 (259)
Q Consensus 233 ~~L~l~~c~~l 243 (259)
+.|++.++..-
T Consensus 143 ~~Ld~~~n~~~ 153 (176)
T 1a9n_A 143 RVLDFQKVKLK 153 (176)
T ss_dssp SEETTEECCHH
T ss_pred ceeCCCcCCHH
Confidence 99999988543
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.48 E-value=2.5e-06 Score=71.34 Aligned_cols=102 Identities=16% Similarity=0.043 Sum_probs=72.6
Q ss_pred CCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcC-EEeeC
Q 048518 106 FSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLE-ELELV 184 (259)
Q Consensus 106 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~-~L~l~ 184 (259)
+++|+.+++.++ .++.+ +...+.++++|+.+.+.+. +..+... .+..+++|+ .+.+.
T Consensus 225 ~~~L~~l~L~~n-~i~~I-~~~aF~~~~~L~~l~l~~n--i~~I~~~------------------aF~~~~~L~~~l~l~ 282 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTI-PDFTFAQKKYLLKIKLPHN--LKTIGQR------------------VFSNCGRLAGTLELP 282 (329)
T ss_dssp CTTCCEEECTTB-CCCEE-CTTTTTTCTTCCEEECCTT--CCEECTT------------------TTTTCTTCCEEEEEC
T ss_pred cCCCeEEECCCC-Cccee-cHhhhhCCCCCCEEECCcc--cceehHH------------------HhhCChhccEEEEEc
Confidence 678888888765 46666 5555678888888888763 5444321 245688999 99998
Q ss_pred CCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEE
Q 048518 185 SLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLE 236 (259)
Q Consensus 185 ~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 236 (259)
+ +++.+...+ ...|++|+.+++.. ..++.++... ..+|++|++++
T Consensus 283 ~--~l~~I~~~a---F~~c~~L~~l~l~~-n~i~~I~~~a-F~~~~~L~~ly 327 (329)
T 3sb4_A 283 A--SVTAIEFGA---FMGCDNLRYVLATG-DKITTLGDEL-FGNGVPSKLIY 327 (329)
T ss_dssp T--TCCEECTTT---TTTCTTEEEEEECS-SCCCEECTTT-TCTTCCCCEEE
T ss_pred c--cceEEchhh---hhCCccCCEEEeCC-CccCccchhh-hcCCcchhhhc
Confidence 7 788887666 45789999999865 4577776643 45677777765
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.47 E-value=6.3e-07 Score=68.05 Aligned_cols=113 Identities=13% Similarity=0.042 Sum_probs=71.9
Q ss_pred CCCcccEeeccccccccccccccccCcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCC
Q 048518 77 VFPLLESLDLINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEK 156 (259)
Q Consensus 77 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 156 (259)
.+++|+.|++++.. +..+... .+..+++|++|+++++ .++.+ +...+.++++|+.|+++++. +..++..
T Consensus 26 ~~~~l~~L~l~~n~-l~~~~~~---~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~---- 94 (177)
T 2o6r_A 26 IPSSATRLELESNK-LQSLPHG---VFDKLTQLTKLSLSQN-QIQSL-PDGVFDKLTKLTILYLHENK-LQSLPNG---- 94 (177)
T ss_dssp CCTTCSEEECCSSC-CCCCCTT---TTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTT----
T ss_pred CCCCCcEEEeCCCc-ccEeCHH---HhcCcccccEEECCCC-cceEe-ChhHccCCCccCEEECCCCC-ccccCHH----
Confidence 35788888888753 3333111 1456788888888876 56655 43344578888888888753 3332211
Q ss_pred CcccCCccccccCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCC
Q 048518 157 PTTTQGFTEINAEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLK 218 (259)
Q Consensus 157 ~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~ 218 (259)
.+..+++|+.|+++++ .++.+.... ...+++|++|++++++...
T Consensus 95 --------------~~~~l~~L~~L~l~~N-~l~~~~~~~---~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 95 --------------VFDKLTQLKELALDTN-QLKSVPDGI---FDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp --------------TTTTCTTCCEEECCSS-CCSCCCTTT---TTTCTTCCEEECCSSCBCC
T ss_pred --------------HhhCCcccCEEECcCC-cceEeCHHH---hcCCcccCEEEecCCCeec
Confidence 1335788888888887 666654433 3457888888888876543
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.38 E-value=2.1e-06 Score=65.17 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=18.3
Q ss_pred ccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEec
Q 048518 104 QSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNC 143 (259)
Q Consensus 104 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 143 (259)
..+++|+.|+++++ .++.+ +...+..+++|+.|+++++
T Consensus 73 ~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 73 DKLTKLTILYLHEN-KLQSL-PNGVFDKLTQLKELALDTN 110 (177)
T ss_dssp TTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred cCCCccCEEECCCC-Ccccc-CHHHhhCCcccCEEECcCC
Confidence 34555555555554 34433 2222234555555555554
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.32 E-value=1.8e-06 Score=66.49 Aligned_cols=129 Identities=14% Similarity=0.074 Sum_probs=81.6
Q ss_pred cEEEEecCcCcceecccccccccCCCCcccEeeccccccccccccccccCcccCCCccEEEEecCCCceEecchhhhhhc
Q 048518 53 QHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFSMAKNL 132 (259)
Q Consensus 53 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l 132 (259)
+.+++++. .++.+ +....++|+.|++++. .+..+.... .+..+++|++|+++++ .++.+.+.. +.++
T Consensus 11 ~~l~~s~~-~l~~i-------p~~~~~~l~~L~l~~n-~i~~~~~~~--~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l 77 (192)
T 1w8a_A 11 TTVDCTGR-GLKEI-------PRDIPLHTTELLLNDN-ELGRISSDG--LFGRLPHLVKLELKRN-QLTGIEPNA-FEGA 77 (192)
T ss_dssp TEEECTTS-CCSSC-------CSCCCTTCSEEECCSC-CCCSBCCSC--SGGGCTTCCEEECCSS-CCCCBCTTT-TTTC
T ss_pred CEEEcCCC-CcCcC-------ccCCCCCCCEEECCCC-cCCccCCcc--ccccCCCCCEEECCCC-CCCCcCHhH-cCCc
Confidence 56666655 33443 2223458888888875 333332100 1467888999999887 566664443 4678
Q ss_pred CCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEe
Q 048518 133 LGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVT 212 (259)
Q Consensus 133 ~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~ 212 (259)
++|+.|+++++. +..++.. .+..+++|+.|+++++ .++.+.... +..+++|+.|+++
T Consensus 78 ~~L~~L~Ls~N~-l~~~~~~------------------~~~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 78 SHIQELQLGENK-IKEISNK------------------MFLGLHQLKTLNLYDN-QISCVMPGS---FEHLNSLTSLNLA 134 (192)
T ss_dssp TTCCEEECCSCC-CCEECSS------------------SSTTCTTCCEEECCSS-CCCEECTTS---STTCTTCCEEECT
T ss_pred ccCCEEECCCCc-CCccCHH------------------HhcCCCCCCEEECCCC-cCCeeCHHH---hhcCCCCCEEEeC
Confidence 889999988853 3333221 1345788999999887 666654433 4467889999998
Q ss_pred cCCCC
Q 048518 213 RCCPL 217 (259)
Q Consensus 213 ~c~~l 217 (259)
+++.-
T Consensus 135 ~N~l~ 139 (192)
T 1w8a_A 135 SNPFN 139 (192)
T ss_dssp TCCBC
T ss_pred CCCcc
Confidence 87654
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.32 E-value=3.3e-06 Score=65.06 Aligned_cols=126 Identities=15% Similarity=0.108 Sum_probs=80.3
Q ss_pred ceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeeccccccccccccccccCccc
Q 048518 26 EDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLREDQS 105 (259)
Q Consensus 26 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 105 (259)
+.+++.+. +++.++.. -.++|+.|+++++. +..+.+.. ....+++|+.|++++. .+..+.. ..+..
T Consensus 11 ~~l~~s~~-~l~~ip~~-----~~~~l~~L~l~~n~-i~~~~~~~---~~~~l~~L~~L~Ls~N-~l~~~~~---~~~~~ 76 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRD-----IPLHTTELLLNDNE-LGRISSDG---LFGRLPHLVKLELKRN-QLTGIEP---NAFEG 76 (192)
T ss_dssp TEEECTTS-CCSSCCSC-----CCTTCSEEECCSCC-CCSBCCSC---SGGGCTTCCEEECCSS-CCCCBCT---TTTTT
T ss_pred CEEEcCCC-CcCcCccC-----CCCCCCEEECCCCc-CCccCCcc---ccccCCCCCEEECCCC-CCCCcCH---hHcCC
Confidence 45666554 34444332 23489999999883 44331111 1346789999999886 3333311 13567
Q ss_pred CCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEeeCC
Q 048518 106 FSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELELVS 185 (259)
Q Consensus 106 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 185 (259)
+++|++|+++++ .++.+.+. .+.++++|+.|+++++. +..++.. .+..+++|+.|++++
T Consensus 77 l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~~------------------~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 77 ASHIQELQLGEN-KIKEISNK-MFLGLHQLKTLNLYDNQ-ISCVMPG------------------SFEHLNSLTSLNLAS 135 (192)
T ss_dssp CTTCCEEECCSC-CCCEECSS-SSTTCTTCCEEECCSSC-CCEECTT------------------SSTTCTTCCEEECTT
T ss_pred cccCCEEECCCC-cCCccCHH-HhcCCCCCCEEECCCCc-CCeeCHH------------------HhhcCCCCCEEEeCC
Confidence 899999999887 57777443 34678999999998864 3332211 244578999999988
Q ss_pred C
Q 048518 186 L 186 (259)
Q Consensus 186 c 186 (259)
+
T Consensus 136 N 136 (192)
T 1w8a_A 136 N 136 (192)
T ss_dssp C
T ss_pred C
Confidence 7
No 130
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.32 E-value=3.2e-06 Score=76.13 Aligned_cols=173 Identities=13% Similarity=0.018 Sum_probs=104.1
Q ss_pred eeeeccchHHH----HHhccceeeeccccccceeccccCCCCCCCCccEEEEecCcCcceecccccccccCCCCcccEee
Q 048518 10 SLLLGNDGTKM----LLKRTEDLRLYSLTGVQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLD 85 (259)
Q Consensus 10 ~l~ls~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~ 85 (259)
.++++++.+.. ++++|+.|++.++ .++.++ ..+++|+.|+++++ .+..+ +. ...+|+.|+
T Consensus 63 ~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N-~l~~ip------~~l~~L~~L~Ls~N-~l~~i-p~-------l~~~L~~L~ 126 (571)
T 3cvr_A 63 ELQLNRLNLSSLPDNLPPQITVLEITQN-ALISLP------ELPASLEYLDACDN-RLSTL-PE-------LPASLKHLD 126 (571)
T ss_dssp EEECCSSCCSCCCSCCCTTCSEEECCSS-CCSCCC------CCCTTCCEEECCSS-CCSCC-CC-------CCTTCCEEE
T ss_pred EEEeCCCCCCccCHhHcCCCCEEECcCC-CCcccc------cccCCCCEEEccCC-CCCCc-ch-------hhcCCCEEE
Confidence 35566555433 2577999999887 444443 35789999999988 44444 21 122888888
Q ss_pred ccccccccccccccccCcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccc
Q 048518 86 LINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTE 165 (259)
Q Consensus 86 l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~ 165 (259)
++++ .+..+ |. .+++|+.|+++++ .++.+ |. .+++|+.|+++++. +..++.....+..+.-..+.
T Consensus 127 Ls~N-~l~~l-----p~--~l~~L~~L~Ls~N-~l~~l-p~----~l~~L~~L~Ls~N~-L~~lp~l~~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 127 VDNN-QLTML-----PE--LPALLEYINADNN-QLTML-PE----LPTSLEVLSVRNNQ-LTFLPELPESLEALDVSTNL 191 (571)
T ss_dssp CCSS-CCSCC-----CC--CCTTCCEEECCSS-CCSCC-CC----CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC
T ss_pred CCCC-cCCCC-----CC--cCccccEEeCCCC-ccCcC-CC----cCCCcCEEECCCCC-CCCcchhhCCCCEEECcCCC
Confidence 8875 23332 32 5678888888776 45554 32 46788888888764 33333311122222222233
Q ss_pred cccCCCccccCCc-------CEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCcc
Q 048518 166 INAEDDQVTFPRL-------EELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYM 220 (259)
Q Consensus 166 ~~~~~~~~~l~~L-------~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 220 (259)
++.++.+. ++| +.|+++++ .++.++.. +..+++|+.|++++++--...
T Consensus 192 L~~lp~~~--~~L~~~~~~L~~L~Ls~N-~l~~lp~~----l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 192 LESLPAVP--VRNHHSEETEIFFRCREN-RITHIPEN----ILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp CSSCCCCC----------CCEEEECCSS-CCCCCCGG----GGGSCTTEEEECCSSSCCHHH
T ss_pred CCchhhHH--HhhhcccccceEEecCCC-cceecCHH----HhcCCCCCEEEeeCCcCCCcC
Confidence 33333321 256 99999998 77776543 335899999999998754433
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.31 E-value=3.5e-06 Score=65.03 Aligned_cols=88 Identities=14% Similarity=0.084 Sum_probs=41.8
Q ss_pred cccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEe
Q 048518 103 DQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELE 182 (259)
Q Consensus 103 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~ 182 (259)
+..+++|+.|+++++ .++.+ +...+.++++|+.|+++++. +..++.. .+..+++|+.|+
T Consensus 50 ~~~l~~L~~L~Ls~N-~i~~i-~~~~f~~l~~L~~L~Ls~N~-l~~i~~~------------------~f~~l~~L~~L~ 108 (193)
T 2wfh_A 50 LSNYKHLTLIDLSNN-RISTL-SNQSFSNMTQLLTLILSYNR-LRCIPPR------------------TFDGLKSLRLLS 108 (193)
T ss_dssp GGGCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCBCCTT------------------TTTTCTTCCEEE
T ss_pred hhcccCCCEEECCCC-cCCEe-CHhHccCCCCCCEEECCCCc-cCEeCHH------------------HhCCCCCCCEEE
Confidence 345555666666554 34444 22223455566666655532 2222110 123355666666
Q ss_pred eCCCccccccCcCCCcccccCCCccEEEEecCC
Q 048518 183 LVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCC 215 (259)
Q Consensus 183 l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~ 215 (259)
++++ .++.+.... +..+++|+.|++.+.+
T Consensus 109 L~~N-~l~~~~~~~---~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 109 LHGN-DISVVPEGA---FNDLSALSHLAIGANP 137 (193)
T ss_dssp CCSS-CCCBCCTTT---TTTCTTCCEEECCSSC
T ss_pred CCCC-CCCeeChhh---hhcCccccEEEeCCCC
Confidence 6655 444443322 2345566666665544
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.24 E-value=5.6e-06 Score=63.87 Aligned_cols=109 Identities=14% Similarity=0.100 Sum_probs=80.5
Q ss_pred CCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEeeCC
Q 048518 106 FSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELELVS 185 (259)
Q Consensus 106 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 185 (259)
.++|++|+++++ .++.+ |. .+.++++|+.|+++++. +..++.. .+..+++|+.|++++
T Consensus 30 ~~~l~~L~L~~n-~i~~i-p~-~~~~l~~L~~L~Ls~N~-i~~i~~~------------------~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 30 PRDVTELYLDGN-QFTLV-PK-ELSNYKHLTLIDLSNNR-ISTLSNQ------------------SFSNMTQLLTLILSY 87 (193)
T ss_dssp CTTCCEEECCSS-CCCSC-CG-GGGGCTTCCEEECCSSC-CCCCCTT------------------TTTTCTTCCEEECCS
T ss_pred CCCCCEEECCCC-cCchh-HH-HhhcccCCCEEECCCCc-CCEeCHh------------------HccCCCCCCEEECCC
Confidence 468999999887 56655 43 45789999999998864 3333211 245689999999999
Q ss_pred CccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEecccc
Q 048518 186 LTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWS 242 (259)
Q Consensus 186 c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 242 (259)
+ .++.+.... +..+++|+.|+++++. ++.++.. ....+++|++|++.+++-
T Consensus 88 N-~l~~i~~~~---f~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 88 N-RLRCIPPRT---FDGLKSLRLLSLHGND-ISVVPEG-AFNDLSALSHLAIGANPL 138 (193)
T ss_dssp S-CCCBCCTTT---TTTCTTCCEEECCSSC-CCBCCTT-TTTTCTTCCEEECCSSCE
T ss_pred C-ccCEeCHHH---hCCCCCCCEEECCCCC-CCeeChh-hhhcCccccEEEeCCCCe
Confidence 8 677776544 4568999999999875 6777653 356789999999987643
No 133
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.22 E-value=1.4e-06 Score=73.98 Aligned_cols=175 Identities=17% Similarity=0.144 Sum_probs=93.1
Q ss_pred CCCCCCccEEEEecCcC----cceeccc-ccccccCCCCcccEeeccccccccccccccccCcccCCCccEEEEecCCCc
Q 048518 46 GEGFPRLQHLHVTGCSE----ILHIVGS-VRRVRCEVFPLLESLDLINLTNLETICYSQLREDQSFSNLRIIYVYSCPKL 120 (259)
Q Consensus 46 ~~~l~~L~~L~l~~c~~----l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 120 (259)
...|++|+.|.+.+... +..+ .. ........+|+|+.|.|+++..++ ++.+ ..++|++|++..|. +
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~-~~~~L~~ll~~~P~L~~L~L~g~~~l~------l~~~-~~~~L~~L~L~~~~-l 205 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWI-EQVDLSPVLDAMPLLNNLKIKGTNNLS------IGKK-PRPNLKSLEIISGG-L 205 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGC-BCCBCHHHHHTCTTCCEEEEECCBTCB------CCSC-BCTTCSEEEEECSB-C
T ss_pred hhhcchhhheeecCcchhhcccccc-cccCHHHHHhcCCCCcEEEEeCCCCce------eccc-cCCCCcEEEEecCC-C
Confidence 34678999998865311 1000 00 000123457899999998763321 1212 37899999998763 4
Q ss_pred eEecchhhh-hhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEeeCCCccccccCcCCCcc
Q 048518 121 KYLFSFSMA-KNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELELVSLTNIKKLWPDQFQG 199 (259)
Q Consensus 121 ~~~~~~~~~-~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 199 (259)
+......+. ..+|+|+.|++..+.+.. ..+.+.. .+........+|+|+.|.+.+|. +..-.......
T Consensus 206 ~~~~l~~l~~~~lp~L~~L~L~~~~~~~---~~~~~~~-------~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~la~ 274 (362)
T 2ra8_A 206 PDSVVEDILGSDLPNLEKLVLYVGVEDY---GFDGDMN-------VFRPLFSKDRFPNLKWLGIVDAE-EQNVVVEMFLE 274 (362)
T ss_dssp CHHHHHHHHHSBCTTCCEEEEECBCGGG---TCCSCGG-------GTGGGSCTTTCTTCCEEEEESCT-THHHHHHHHHH
T ss_pred ChHHHHHHHHccCCCCcEEEEecccccc---ccchhHH-------HHHHHHhcCCCCCcCEEeCCCCC-CchHHHHHHHh
Confidence 322122222 268999999986432210 0010010 00001112357899999998873 32111100000
Q ss_pred cccCCCccEEEEecCCCCCccCChh---HHhhcCCccEEEEeccc
Q 048518 200 MYCCQNLTKVTVTRCCPLKYMFSYS---MANSLGQLRHLEIINCW 241 (259)
Q Consensus 200 ~~~~~~L~~L~l~~c~~l~~~~~~~---~~~~l~~L~~L~l~~c~ 241 (259)
...+++|++|+++.+ .++...... .+..+++|++|++++|.
T Consensus 275 a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 275 SDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 124688999999654 466532111 22467889999998874
No 134
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.14 E-value=7.8e-07 Score=75.61 Aligned_cols=188 Identities=15% Similarity=0.221 Sum_probs=104.1
Q ss_pred Hhccceeeecccccc--c-eecc--ccC-CCCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccc
Q 048518 22 LKRTEDLRLYSLTGV--Q-NVVH--ELD-DGEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETI 95 (259)
Q Consensus 22 ~~~L~~L~l~~~~~~--~-~~~~--~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 95 (259)
+++|+.|.+.+...- + .|.. .+. -+..+|+|++|.+.++..+. + + . ...++|+.|++..+. +..-
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l-~-----~-~~~~~L~~L~L~~~~-l~~~ 208 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-I-G-----K-KPRPNLKSLEIISGG-LPDS 208 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-C-C-----S-CBCTTCSEEEEECSB-CCHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-e-c-----c-ccCCCCcEEEEecCC-CChH
Confidence 789999998654210 0 0110 000 03478999999999874332 1 1 1 237899999998654 3221
Q ss_pred ccccccCcccCCCccEEEEecCCC-------ceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCcccccc
Q 048518 96 CYSQLREDQSFSNLRIIYVYSCPK-------LKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINA 168 (259)
Q Consensus 96 ~~~~~~~~~~~~~L~~L~l~~c~~-------l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~ 168 (259)
....+. ...+|+|+.|+++.+.+ +..+.+......+|+|+.|.+.+|..........
T Consensus 209 ~l~~l~-~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l--------------- 272 (362)
T 2ra8_A 209 VVEDIL-GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF--------------- 272 (362)
T ss_dssp HHHHHH-HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH---------------
T ss_pred HHHHHH-HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH---------------
Confidence 111111 23689999999964221 2222111112358999999999876432211000
Q ss_pred CCCccccCCcCEEeeCCCccccccCcCCC-cccccCCCccEEEEecCCCCCccCChhHHhhcCC-c-cEEEEeccc
Q 048518 169 EDDQVTFPRLEELELVSLTNIKKLWPDQF-QGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQ-L-RHLEIINCW 241 (259)
Q Consensus 169 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~-L-~~L~l~~c~ 241 (259)
.....+|+|+.|+++.+ .++....... ..+..+++|++|++++|. +... ....+.. + .++++++-.
T Consensus 273 -a~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d~----~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 273 -LESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY-LSDE----MKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp -HHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCHH----HHHHHHHHCCSEEECCSBC
T ss_pred -HhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc-CCHH----HHHHHHHHcCCEEEecCCc
Confidence 00123789999999875 5655321111 113467999999998874 5543 3333332 3 455655443
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.10 E-value=9.3e-06 Score=73.13 Aligned_cols=103 Identities=14% Similarity=0.111 Sum_probs=54.2
Q ss_pred CccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEeeCCCc
Q 048518 108 NLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELELVSLT 187 (259)
Q Consensus 108 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 187 (259)
.|+.|+++++ .++.+ |. +..+++|+.|+++++. +..+|. .+..+++|+.|+++++
T Consensus 442 ~L~~L~Ls~n-~l~~l-p~--~~~l~~L~~L~Ls~N~-l~~lp~-------------------~~~~l~~L~~L~Ls~N- 496 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVL-CH--LEQLLLVTHLDLSHNR-LRALPP-------------------ALAALRCLEVLQASDN- 496 (567)
T ss_dssp TCSEEECTTS-CCSSC-CC--GGGGTTCCEEECCSSC-CCCCCG-------------------GGGGCTTCCEEECCSS-
T ss_pred CceEEEecCC-CCCCC-cC--ccccccCcEeecCccc-ccccch-------------------hhhcCCCCCEEECCCC-
Confidence 4667777665 45544 33 3566777777776652 323322 2334566666666655
Q ss_pred cccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccc
Q 048518 188 NIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCW 241 (259)
Q Consensus 188 ~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 241 (259)
.++.++ . +..+++|+.|+++++. ++.++....+..+++|+.|++++++
T Consensus 497 ~l~~lp--~---l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 497 ALENVD--G---VANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp CCCCCG--G---GTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CCCCCc--c---cCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc
Confidence 444442 1 3345666666665543 4444211134555666666666553
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.06 E-value=3.2e-06 Score=78.37 Aligned_cols=110 Identities=19% Similarity=0.100 Sum_probs=68.7
Q ss_pred cCCCCcccEeeccccccccccccccccCcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCC
Q 048518 75 CEVFPLLESLDLINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDM 154 (259)
Q Consensus 75 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 154 (259)
...+++|+.|+++++. +..+.. ....+++|+.|+++++ .++.+ |..+ .++++|+.|+++++. +..++.
T Consensus 220 ~~~l~~L~~L~Ls~n~-l~~l~~----~~~~l~~L~~L~Ls~N-~l~~l-p~~~-~~l~~L~~L~Ls~N~-l~~lp~--- 287 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQ-IFNISA----NIFKYDFLTRLYLNGN-SLTEL-PAEI-KNLSNLRVLDLSHNR-LTSLPA--- 287 (727)
T ss_dssp --CCCCCCEEECTTSC-CSCCCG----GGGGCCSCSCCBCTTS-CCSCC-CGGG-GGGTTCCEEECTTSC-CSSCCS---
T ss_pred hccCCCCcEEECCCCC-CCCCCh----hhcCCCCCCEEEeeCC-cCccc-Chhh-hCCCCCCEEeCcCCc-CCccCh---
Confidence 3456778888887754 223211 2446778888888776 45544 5443 577888888887764 323321
Q ss_pred CCCcccCCccccccCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCC
Q 048518 155 EKPTTTQGFTEINAEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPL 217 (259)
Q Consensus 155 ~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l 217 (259)
.+..+++|+.|+++++ .++.++.. +..+++|+.|++++++--
T Consensus 288 ----------------~~~~l~~L~~L~L~~N-~l~~lp~~----~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 288 ----------------ELGSCFQLKYFYFFDN-MVTTLPWE----FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp ----------------SGGGGTTCSEEECCSS-CCCCCCSS----TTSCTTCCCEECTTSCCC
T ss_pred ----------------hhcCCCCCCEEECCCC-CCCccChh----hhcCCCccEEeCCCCccC
Confidence 2445778888888877 56655432 446788888888877643
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.01 E-value=4.2e-07 Score=70.44 Aligned_cols=149 Identities=13% Similarity=0.119 Sum_probs=96.9
Q ss_pred CccEEEEecC-cCcceecccccccccCCCCcccEeeccccccccccccccccCcccCCCccEEEEecCCCceEecchhhh
Q 048518 51 RLQHLHVTGC-SEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFSMA 129 (259)
Q Consensus 51 ~L~~L~l~~c-~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 129 (259)
.|+...+.+. +.++.+ +. ....+++|+.|+++++ .+..+ |.+..+++|+.|+++++ .++.+ |. ..
T Consensus 24 ~l~~~~l~~~~~~l~~l-~~----~~~~l~~L~~L~ls~n-~l~~l-----~~~~~l~~L~~L~l~~n-~l~~l-~~-~~ 89 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKM-DA----TLSTLKACKHLALSTN-NIEKI-----SSLSGMENLRILSLGRN-LIKKI-EN-LD 89 (198)
T ss_dssp TCSEEECCBCCTTCCCC-HH----HHHHTTTCSEEECSEE-EESCC-----CCHHHHTTCCEEEEEEE-EECSC-SS-HH
T ss_pred chheeEeccccCcHhhh-hH----HHhcCCCCCEEECCCC-CCccc-----cccccCCCCCEEECCCC-Ccccc-cc-hh
Confidence 4666666643 233333 11 2345789999999886 34443 23668899999999987 46655 43 33
Q ss_pred hhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEE
Q 048518 130 KNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKV 209 (259)
Q Consensus 130 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L 209 (259)
..+++|+.|+++++ .+..++ .+..+++|+.|+++++ .++.+.... .+..+++|+.|
T Consensus 90 ~~~~~L~~L~L~~N-~l~~l~--------------------~~~~l~~L~~L~l~~N-~i~~~~~~~--~l~~l~~L~~L 145 (198)
T 1ds9_A 90 AVADTLEELWISYN-QIASLS--------------------GIEKLVNLRVLYMSNN-KITNWGEID--KLAALDKLEDL 145 (198)
T ss_dssp HHHHHCSEEEEEEE-ECCCHH--------------------HHHHHHHSSEEEESEE-ECCCHHHHH--HHTTTTTCSEE
T ss_pred hcCCcCCEEECcCC-cCCcCC--------------------ccccCCCCCEEECCCC-cCCchhHHH--HHhcCCCCCEE
Confidence 56799999999997 343332 2345789999999987 555543211 14468999999
Q ss_pred EEecCCCCCccCC--------hhHHhhcCCccEEEE
Q 048518 210 TVTRCCPLKYMFS--------YSMANSLGQLRHLEI 237 (259)
Q Consensus 210 ~l~~c~~l~~~~~--------~~~~~~l~~L~~L~l 237 (259)
++++++--...|. ......+++|++|+-
T Consensus 146 ~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 146 LLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp EECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred EecCCccccccccccchHHHHHHHHHhCCCcEEECC
Confidence 9998864222222 123577899999873
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.97 E-value=4.6e-07 Score=70.23 Aligned_cols=130 Identities=18% Similarity=0.156 Sum_probs=81.4
Q ss_pred CCCCCCccEEEEecCcCcceecccccccccCCCCcccEeeccccccccccccccccCcccCCCccEEEEecCCCceEecc
Q 048518 46 GEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFS 125 (259)
Q Consensus 46 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 125 (259)
+..+++|+.|+++++. +..+ + ....+++|+.|+++++. +..+.. ....+++|+.|+++++ .++.+ +
T Consensus 44 ~~~l~~L~~L~ls~n~-l~~l-~-----~~~~l~~L~~L~l~~n~-l~~l~~----~~~~~~~L~~L~L~~N-~l~~l-~ 109 (198)
T 1ds9_A 44 LSTLKACKHLALSTNN-IEKI-S-----SLSGMENLRILSLGRNL-IKKIEN----LDAVADTLEELWISYN-QIASL-S 109 (198)
T ss_dssp HHHTTTCSEEECSEEE-ESCC-C-----CHHHHTTCCEEEEEEEE-ECSCSS----HHHHHHHCSEEEEEEE-ECCCH-H
T ss_pred HhcCCCCCEEECCCCC-Cccc-c-----ccccCCCCCEEECCCCC-cccccc----hhhcCCcCCEEECcCC-cCCcC-C
Confidence 4578899999998874 4433 2 23346899999998763 333310 1345688999999887 56554 3
Q ss_pred hhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEeeCCCccccccCcCC-------Cc
Q 048518 126 FSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELELVSLTNIKKLWPDQ-------FQ 198 (259)
Q Consensus 126 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-------~~ 198 (259)
....+++|+.|+++++. +..++.. ..+..+++|+.|++.++ .+....+.. ..
T Consensus 110 --~~~~l~~L~~L~l~~N~-i~~~~~~-----------------~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 110 --GIEKLVNLRVLYMSNNK-ITNWGEI-----------------DKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIE 168 (198)
T ss_dssp --HHHHHHHSSEEEESEEE-CCCHHHH-----------------HHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHH
T ss_pred --ccccCCCCCEEECCCCc-CCchhHH-----------------HHHhcCCCCCEEEecCC-ccccccccccchHHHHHH
Confidence 24678999999998864 2222110 02345789999999988 343321110 00
Q ss_pred ccccCCCccEEE
Q 048518 199 GMYCCQNLTKVT 210 (259)
Q Consensus 199 ~~~~~~~L~~L~ 210 (259)
.+..+++|+.|+
T Consensus 169 ~~~~l~~L~~Ld 180 (198)
T 1ds9_A 169 VVKRLPNLKKLD 180 (198)
T ss_dssp HHHHCSSCSEEC
T ss_pred HHHhCCCcEEEC
Confidence 134578888887
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.95 E-value=2e-05 Score=71.00 Aligned_cols=190 Identities=14% Similarity=0.105 Sum_probs=118.0
Q ss_pred eeeeccchHHHH------Hhccceeeeccccc-------------cceeccccCCCCCCCCccEEEEecCcCcceecccc
Q 048518 10 SLLLGNDGTKML------LKRTEDLRLYSLTG-------------VQNVVHELDDGEGFPRLQHLHVTGCSEILHIVGSV 70 (259)
Q Consensus 10 ~l~ls~~~~~~~------~~~L~~L~l~~~~~-------------~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 70 (259)
.|+++.+.+..+ +++|+.|++.++.. ....+.. ++.+++|+.|+...+..+..+....
T Consensus 353 ~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~---l~~l~~L~~L~~l~~n~~~~L~~l~ 429 (567)
T 1dce_A 353 RCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET---LQYFSTLKAVDPMRAAYLDDLRSKF 429 (567)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHH---HHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred eccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHH---HHHHHhcccCcchhhcccchhhhhh
Confidence 356677766543 67888888755421 1111111 4567788888732222222210000
Q ss_pred cc---cccCCCCcccEeeccccccccccccccccCcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcc
Q 048518 71 RR---VRCEVFPLLESLDLINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLK 147 (259)
Q Consensus 71 ~~---~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 147 (259)
.. ........|+.|+++++ .+..+ |.+..+++|+.|+++++ .++.+ |.. +.++++|+.|+++++. +.
T Consensus 430 l~~n~i~~l~~~~L~~L~Ls~n-~l~~l-----p~~~~l~~L~~L~Ls~N-~l~~l-p~~-~~~l~~L~~L~Ls~N~-l~ 499 (567)
T 1dce_A 430 LLENSVLKMEYADVRVLHLAHK-DLTVL-----CHLEQLLLVTHLDLSHN-RLRAL-PPA-LAALRCLEVLQASDNA-LE 499 (567)
T ss_dssp HHHHHHHHHHHTTCSEEECTTS-CCSSC-----CCGGGGTTCCEEECCSS-CCCCC-CGG-GGGCTTCCEEECCSSC-CC
T ss_pred hhcccccccCccCceEEEecCC-CCCCC-----cCccccccCcEeecCcc-ccccc-chh-hhcCCCCCEEECCCCC-CC
Confidence 00 00011246889999886 44443 33678899999999998 56655 554 4689999999999863 33
Q ss_pred eecccCCCCCcccCCccccccCCCccccCCcCEEeeCCCccccccC-cCCCcccccCCCccEEEEecCCCCCccCCh--h
Q 048518 148 MMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELELVSLTNIKKLW-PDQFQGMYCCQNLTKVTVTRCCPLKYMFSY--S 224 (259)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~ 224 (259)
.++ .+..+++|+.|+++++ .++.+. +.. +..+++|+.|++++++ ++..++. .
T Consensus 500 ~lp--------------------~l~~l~~L~~L~Ls~N-~l~~~~~p~~---l~~l~~L~~L~L~~N~-l~~~~~~~~~ 554 (567)
T 1dce_A 500 NVD--------------------GVANLPRLQELLLCNN-RLQQSAAIQP---LVSCPRLVLLNLQGNS-LCQEEGIQER 554 (567)
T ss_dssp CCG--------------------GGTTCSSCCEEECCSS-CCCSSSTTGG---GGGCTTCCEEECTTSG-GGGSSSCTTH
T ss_pred CCc--------------------ccCCCCCCcEEECCCC-CCCCCCCcHH---HhcCCCCCEEEecCCc-CCCCccHHHH
Confidence 332 2456899999999998 666663 222 5678999999999976 5555432 2
Q ss_pred HHhhcCCccEEEE
Q 048518 225 MANSLGQLRHLEI 237 (259)
Q Consensus 225 ~~~~l~~L~~L~l 237 (259)
+...+++|+.|++
T Consensus 555 l~~~lp~L~~L~l 567 (567)
T 1dce_A 555 LAEMLPSVSSILT 567 (567)
T ss_dssp HHHHCTTCSEEEC
T ss_pred HHHHCcccCccCC
Confidence 4456889998863
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.90 E-value=0.00039 Score=59.80 Aligned_cols=60 Identities=13% Similarity=0.192 Sum_probs=35.8
Q ss_pred ccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEecc
Q 048518 172 QVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINC 240 (259)
Q Consensus 172 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 240 (259)
+..+++|+.+.+.+ +++.+.... ..+|++|+.+.+.. +++.++... ..+| +|+++++.+.
T Consensus 296 F~~c~~L~~l~l~~--~i~~I~~~a---F~~c~~L~~l~lp~--~l~~I~~~a-F~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 296 LEGCPKLARFEIPE--SIRILGQGL---LGGNRKVTQLTIPA--NVTQINFSA-FNNT-GIKEVKVEGT 355 (401)
T ss_dssp TTTCTTCCEECCCT--TCCEECTTT---TTTCCSCCEEEECT--TCCEECTTS-SSSS-CCCEEEECCS
T ss_pred hhCCccCCeEEeCC--ceEEEhhhh---hcCCCCccEEEECc--cccEEcHHh-CCCC-CCCEEEEcCC
Confidence 34566777777763 466665554 34567777777733 366665433 3455 7777777654
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.89 E-value=6.1e-07 Score=76.61 Aligned_cols=13 Identities=8% Similarity=-0.135 Sum_probs=6.4
Q ss_pred CCCccEEEEecCC
Q 048518 203 CQNLTKVTVTRCC 215 (259)
Q Consensus 203 ~~~L~~L~l~~c~ 215 (259)
.++|++|++++++
T Consensus 238 ~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 238 HPSLELLHLYFNE 250 (372)
T ss_dssp CSSCCEEECTTSS
T ss_pred CCCCCEEeccCCC
Confidence 3455555555443
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.85 E-value=1.7e-05 Score=73.56 Aligned_cols=109 Identities=16% Similarity=0.147 Sum_probs=76.3
Q ss_pred CCCCCCccEEEEecCcCcceecccccccccCCCCcccEeecccccccccccccccc-CcccCCCccEEEEecCCCceEec
Q 048518 46 GEGFPRLQHLHVTGCSEILHIVGSVRRVRCEVFPLLESLDLINLTNLETICYSQLR-EDQSFSNLRIIYVYSCPKLKYLF 124 (259)
Q Consensus 46 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~ 124 (259)
+..+++|+.|+++++. +..+ +. ....+++|+.|+|+++ .+..+ | .+..+++|+.|+++++ .++.+
T Consensus 220 ~~~l~~L~~L~Ls~n~-l~~l-~~----~~~~l~~L~~L~Ls~N-~l~~l-----p~~~~~l~~L~~L~Ls~N-~l~~l- 285 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQ-IFNI-SA----NIFKYDFLTRLYLNGN-SLTEL-----PAEIKNLSNLRVLDLSHN-RLTSL- 285 (727)
T ss_dssp --CCCCCCEEECTTSC-CSCC-CG----GGGGCCSCSCCBCTTS-CCSCC-----CGGGGGGTTCCEEECTTS-CCSSC-
T ss_pred hccCCCCcEEECCCCC-CCCC-Ch----hhcCCCCCCEEEeeCC-cCccc-----ChhhhCCCCCCEEeCcCC-cCCcc-
Confidence 5678899999999885 4444 22 2235789999999886 33333 2 3678899999999988 46655
Q ss_pred chhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEeeCCCcccc
Q 048518 125 SFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELELVSLTNIK 190 (259)
Q Consensus 125 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 190 (259)
|..+ .++++|+.|+++++ .+..++. .+..+++|+.|+++++ .++
T Consensus 286 p~~~-~~l~~L~~L~L~~N-~l~~lp~-------------------~~~~l~~L~~L~L~~N-~l~ 329 (727)
T 4b8c_D 286 PAEL-GSCFQLKYFYFFDN-MVTTLPW-------------------EFGNLCNLQFLGVEGN-PLE 329 (727)
T ss_dssp CSSG-GGGTTCSEEECCSS-CCCCCCS-------------------STTSCTTCCCEECTTS-CCC
T ss_pred Chhh-cCCCCCCEEECCCC-CCCccCh-------------------hhhcCCCccEEeCCCC-ccC
Confidence 5544 67999999999887 3444432 2456889999999988 444
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.84 E-value=0.00041 Score=59.68 Aligned_cols=62 Identities=15% Similarity=0.151 Sum_probs=41.9
Q ss_pred ccccCCcCEEeeCCCc----cccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEec
Q 048518 172 QVTFPRLEELELVSLT----NIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIIN 239 (259)
Q Consensus 172 ~~~l~~L~~L~l~~c~----~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 239 (259)
+..+++|+.+.+.+.. .++.+.... ...|++|+.+++. .+++.++... ...|.+|+++.+.+
T Consensus 267 F~~c~~L~~l~l~~~~~~~~~~~~I~~~a---F~~c~~L~~l~l~--~~i~~I~~~a-F~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 267 FYYCPELAEVTTYGSTFNDDPEAMIHPYC---LEGCPKLARFEIP--ESIRILGQGL-LGGNRKVTQLTIPA 332 (401)
T ss_dssp TTTCTTCCEEEEESSCCCCCTTCEECTTT---TTTCTTCCEECCC--TTCCEECTTT-TTTCCSCCEEEECT
T ss_pred hhCCCCCCEEEeCCccccCCcccEECHHH---hhCCccCCeEEeC--CceEEEhhhh-hcCCCCccEEEECc
Confidence 4567889998887641 112344443 4578899999987 3577776643 56788999998843
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.78 E-value=6.3e-05 Score=56.90 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=48.5
Q ss_pred CCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEeeCCC
Q 048518 107 SNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELELVSL 186 (259)
Q Consensus 107 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c 186 (259)
++|+.|+++++ .++.+.+. .+.++++|+.|+++++ .+..++.. .+..+++|+.|+++++
T Consensus 33 ~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~i~~~------------------~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLEPG-VFDHLVNLQQLYFNSN-KLTAIPTG------------------VFDKLTQLTQLDLNDN 91 (174)
T ss_dssp TTCSEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCCCTT------------------TTTTCTTCCEEECCSS
T ss_pred CCCcEEEeCCC-CccccCHH-HhcCCcCCCEEECCCC-CCCccChh------------------HhCCcchhhEEECCCC
Confidence 56677777665 45544332 3356677777777664 33333211 1234677777777766
Q ss_pred ccccccCcCCCcccccCCCccEEEEecCCC
Q 048518 187 TNIKKLWPDQFQGMYCCQNLTKVTVTRCCP 216 (259)
Q Consensus 187 ~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~ 216 (259)
.++.+.... +..+++|+.|++++++.
T Consensus 92 -~l~~l~~~~---~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 92 -HLKSIPRGA---FDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp -CCCCCCTTT---TTTCTTCSEEECCSSCB
T ss_pred -ccceeCHHH---hccccCCCEEEeCCCCc
Confidence 555554432 34567777777777653
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.66 E-value=0.00012 Score=55.00 Aligned_cols=86 Identities=15% Similarity=0.164 Sum_probs=49.2
Q ss_pred CCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEeeCC
Q 048518 106 FSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELELVS 185 (259)
Q Consensus 106 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 185 (259)
.++|+.|+++++ .++.+.+. .+.++++|+.|+++++ .+..++.. .+..+++|+.|++++
T Consensus 29 ~~~l~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~Ls~N-~l~~l~~~------------------~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 29 PTTTQVLYLYDN-QITKLEPG-VFDRLTQLTRLDLDNN-QLTVLPAG------------------VFDKLTQLTQLSLND 87 (170)
T ss_dssp CTTCSEEECCSS-CCCCCCTT-TTTTCTTCSEEECCSS-CCCCCCTT------------------TTTTCTTCCEEECCS
T ss_pred CCCCcEEEcCCC-cCCccChh-hhcCcccCCEEECCCC-CcCccChh------------------hccCCCCCCEEECCC
Confidence 356677777665 45554332 2345677777777664 23333211 123467777777777
Q ss_pred CccccccCcCCCcccccCCCccEEEEecCCC
Q 048518 186 LTNIKKLWPDQFQGMYCCQNLTKVTVTRCCP 216 (259)
Q Consensus 186 c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~ 216 (259)
+ .++.+.... +..+++|+.|++++.+.
T Consensus 88 N-~l~~~~~~~---~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 88 N-QLKSIPRGA---FDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp S-CCCCCCTTT---TTTCTTCCEEECCSSCB
T ss_pred C-ccCEeCHHH---hcCCCCCCEEEeCCCCC
Confidence 6 566554433 34567777777776653
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.60 E-value=0.00013 Score=54.80 Aligned_cols=103 Identities=14% Similarity=0.046 Sum_probs=73.4
Q ss_pred ccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEeeCCCcc
Q 048518 109 LRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELELVSLTN 188 (259)
Q Consensus 109 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 188 (259)
.+.+++++. .++.+ |..+ .++|+.|+++++ .+..++.. .+..+++|+.|+++++ .
T Consensus 11 ~~~l~~s~n-~l~~i-p~~~---~~~l~~L~L~~N-~i~~~~~~------------------~~~~l~~L~~L~Ls~N-~ 65 (170)
T 3g39_A 11 GTTVDCSGK-SLASV-PTGI---PTTTQVLYLYDN-QITKLEPG------------------VFDRLTQLTRLDLDNN-Q 65 (170)
T ss_dssp TTEEECTTS-CCSSC-CSCC---CTTCSEEECCSS-CCCCCCTT------------------TTTTCTTCSEEECCSS-C
T ss_pred CCEEEeCCC-CcCcc-CccC---CCCCcEEEcCCC-cCCccChh------------------hhcCcccCCEEECCCC-C
Confidence 467777765 56655 4332 478999999885 33333211 2456899999999998 7
Q ss_pred ccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccc
Q 048518 189 IKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCW 241 (259)
Q Consensus 189 l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 241 (259)
++.+.... ...+++|+.|+++++. ++.++.. ....+++|++|++.+++
T Consensus 66 l~~l~~~~---f~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 66 LTVLPAGV---FDKLTQLTQLSLNDNQ-LKSIPRG-AFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCTTT---TTTCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSC
T ss_pred cCccChhh---ccCCCCCCEEECCCCc-cCEeCHH-HhcCCCCCCEEEeCCCC
Confidence 77776544 3568999999999875 6777653 35678999999998864
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.60 E-value=1e-06 Score=75.29 Aligned_cols=172 Identities=12% Similarity=0.057 Sum_probs=95.5
Q ss_pred CCCCccEEEEecCcCccee-cccccccccCCCCcccEeeccccccccccccccccCcccCCCccEEEEecCCCceEecch
Q 048518 48 GFPRLQHLHVTGCSEILHI-VGSVRRVRCEVFPLLESLDLINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSF 126 (259)
Q Consensus 48 ~l~~L~~L~l~~c~~l~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 126 (259)
.+++|+.|++++|. +... +...........++|+.|+++++. +.......+ ...+++|++|++++| .+++....
T Consensus 70 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l--~~~L~~L~~L~Ls~n-~l~~~~~~ 144 (372)
T 3un9_A 70 VLSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTL--LPVFLRARKLGLQLN-SLGPEACK 144 (372)
T ss_dssp HHTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHT--HHHHHTEEEEECCSS-CCCHHHHH
T ss_pred HHhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHH--HHHHHhccHhhcCCC-CCCHHHHH
Confidence 35678888888875 3221 000000011223688888888873 322211111 234668899999888 45543222
Q ss_pred hhh----hhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEeeCCCccccccCcCCC-cccc
Q 048518 127 SMA----KNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELELVSLTNIKKLWPDQF-QGMY 201 (259)
Q Consensus 127 ~~~----~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~ 201 (259)
.+. ...++|+.|++++|. +.... ... +...+...++|+.|+++++ .++....... ..+.
T Consensus 145 ~L~~~L~~~~~~L~~L~Ls~n~-l~~~~-----~~~---------l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~ 208 (372)
T 3un9_A 145 DLRDLLLHDQCQITTLRLSNNP-LTAAG-----VAV---------LMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLD 208 (372)
T ss_dssp HHHHHHHSTTCCCCEEECCSSC-CHHHH-----HHH---------HHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGG
T ss_pred HHHHHHHhcCCccceeeCCCCC-CChHH-----HHH---------HHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHh
Confidence 222 235789999998874 32110 000 0001234678999999988 4554321111 1134
Q ss_pred cCCCccEEEEecCCCCCccCChhH---HhhcCCccEEEEeccc
Q 048518 202 CCQNLTKVTVTRCCPLKYMFSYSM---ANSLGQLRHLEIINCW 241 (259)
Q Consensus 202 ~~~~L~~L~l~~c~~l~~~~~~~~---~~~l~~L~~L~l~~c~ 241 (259)
..++|+.|++++|. ++......+ ....++|++|++++|+
T Consensus 209 ~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 209 RNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp GCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred cCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 56789999999875 555432222 3356889999998885
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.58 E-value=0.00016 Score=54.58 Aligned_cols=102 Identities=14% Similarity=0.077 Sum_probs=72.7
Q ss_pred cEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEeeCCCccc
Q 048518 110 RIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELELVSLTNI 189 (259)
Q Consensus 110 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 189 (259)
+.+++++. .++.+ |..+ .++|+.|+++++. +..++.. .+..+++|+.|+++++ .+
T Consensus 15 ~~l~~~~n-~l~~i-P~~~---~~~L~~L~Ls~N~-l~~~~~~------------------~~~~l~~L~~L~Ls~N-~l 69 (174)
T 2r9u_A 15 TLVNCQNI-RLASV-PAGI---PTDKQRLWLNNNQ-ITKLEPG------------------VFDHLVNLQQLYFNSN-KL 69 (174)
T ss_dssp SEEECCSS-CCSSC-CSCC---CTTCSEEECCSSC-CCCCCTT------------------TTTTCTTCCEEECCSS-CC
T ss_pred cEEEeCCC-CCCcc-CCCc---CCCCcEEEeCCCC-ccccCHH------------------HhcCCcCCCEEECCCC-CC
Confidence 56777664 45555 4332 3789999998864 3333211 2456899999999998 78
Q ss_pred cccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccc
Q 048518 190 KKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCW 241 (259)
Q Consensus 190 ~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 241 (259)
+.+.... +..+++|+.|+++++. ++.++.. ....+++|++|++.+++
T Consensus 70 ~~i~~~~---~~~l~~L~~L~L~~N~-l~~l~~~-~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 70 TAIPTGV---FDKLTQLTQLDLNDNH-LKSIPRG-AFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCTTT---TTTCTTCCEEECCSSC-CCCCCTT-TTTTCTTCSEEECCSSC
T ss_pred CccChhH---hCCcchhhEEECCCCc-cceeCHH-HhccccCCCEEEeCCCC
Confidence 8776543 3468999999999864 6777652 35678999999998875
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.55 E-value=0.00012 Score=61.35 Aligned_cols=89 Identities=18% Similarity=0.169 Sum_probs=62.8
Q ss_pred cccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEe
Q 048518 103 DQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELE 182 (259)
Q Consensus 103 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~ 182 (259)
+..+++|+.|++++...++.+ +...+.++++|+.|+++++ .+..++.. .+..+++|+.|+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N-~l~~~~~~------------------~~~~l~~L~~L~ 86 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKS-GLRFVAPD------------------AFHFTPRLSRLN 86 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSS-CCCEECTT------------------GGGSCSCCCEEE
T ss_pred CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCC-ccceeCHH------------------HhcCCcCCCEEe
Confidence 456778999999864477877 4344568999999999986 46554421 234688999999
Q ss_pred eCCCccccccCcCCCcccccCCCccEEEEecCCC
Q 048518 183 LVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCP 216 (259)
Q Consensus 183 l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~ 216 (259)
++++ .|+.++...+ ..+ .|+.|++.+++.
T Consensus 87 l~~N-~l~~~~~~~~---~~~-~L~~l~l~~N~~ 115 (347)
T 2ifg_A 87 LSFN-ALESLSWKTV---QGL-SLQELVLSGNPL 115 (347)
T ss_dssp CCSS-CCSCCCSTTT---CSC-CCCEEECCSSCC
T ss_pred CCCC-ccceeCHHHc---ccC-CceEEEeeCCCc
Confidence 9987 7777765442 223 399999987664
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.46 E-value=0.00032 Score=58.73 Aligned_cols=86 Identities=15% Similarity=0.113 Sum_probs=60.7
Q ss_pred CCCCcccEeeccccccccccccccccCcccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCC
Q 048518 76 EVFPLLESLDLINLTNLETICYSQLREDQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDME 155 (259)
Q Consensus 76 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 155 (259)
..+++|+.|+|++...+..+... .+..+++|+.|+++++ .++.+.+. .+.++++|+.|+++++ .+..++...
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~~~---~~~~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~~~~~-- 99 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLELR---DLRGLGELRNLTIVKS-GLRFVAPD-AFHFTPRLSRLNLSFN-ALESLSWKT-- 99 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEECGG---GSCSCCCCSEEECCSS-CCCEECTT-GGGSCSCCCEEECCSS-CCSCCCSTT--
T ss_pred CCCCCeeEEEccCCCCCCCcChh---HhccccCCCEEECCCC-ccceeCHH-HhcCCcCCCEEeCCCC-ccceeCHHH--
Confidence 34678999999875566655321 2568999999999998 68888454 4468999999999985 444443211
Q ss_pred CCcccCCccccccCCCccccCCcCEEeeCCC
Q 048518 156 KPTTTQGFTEINAEDDQVTFPRLEELELVSL 186 (259)
Q Consensus 156 ~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c 186 (259)
+..++ |+.|++.++
T Consensus 100 ----------------~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 100 ----------------VQGLS-LQELVLSGN 113 (347)
T ss_dssp ----------------TCSCC-CCEEECCSS
T ss_pred ----------------cccCC-ceEEEeeCC
Confidence 11233 999999876
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.05 E-value=0.065 Score=45.49 Aligned_cols=60 Identities=12% Similarity=0.188 Sum_probs=39.7
Q ss_pred cccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEecc
Q 048518 173 VTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINC 240 (259)
Q Consensus 173 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 240 (259)
..+++|+.+++.+ +++.+...+ ..+|.+|+.+++.. +++.++..+ ...|.+|+++++...
T Consensus 317 ~~c~~L~~i~lp~--~v~~I~~~a---F~~c~~L~~i~lp~--~l~~I~~~a-F~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 317 ESCTSLVSIDLPY--LVEEIGKRS---FRGCTSLSNINFPL--SLRKIGANA-FQGCINLKKVELPKR 376 (394)
T ss_dssp TTCTTCCEECCCT--TCCEECTTT---TTTCTTCCEECCCT--TCCEECTTT-BTTCTTCCEEEEEGG
T ss_pred cCCCCCCEEEeCC--cccEEhHHh---ccCCCCCCEEEECc--cccEehHHH-hhCCCCCCEEEECCC
Confidence 4567788877753 466665554 44678888887753 366676543 467888888888643
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.88 E-value=0.00082 Score=51.19 Aligned_cols=13 Identities=0% Similarity=0.051 Sum_probs=7.3
Q ss_pred cCCCccEEEEecC
Q 048518 105 SFSNLRIIYVYSC 117 (259)
Q Consensus 105 ~~~~L~~L~l~~c 117 (259)
..++|++|+++++
T Consensus 63 ~~~~L~~L~Ls~n 75 (185)
T 1io0_A 63 TNTYVKKFSIVGT 75 (185)
T ss_dssp TCCSCCEEECTTS
T ss_pred hCCCcCEEECcCC
Confidence 3455666666555
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.19 E-value=0.22 Score=42.12 Aligned_cols=83 Identities=13% Similarity=0.191 Sum_probs=51.2
Q ss_pred cccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEe
Q 048518 103 DQSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELE 182 (259)
Q Consensus 103 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~ 182 (259)
+..+.+|+.+.+.. .++.+ ....+.++++|+.+.+.+ .+..+... .+..+++|+.+.
T Consensus 293 F~~~~~L~~i~l~~--~i~~I-~~~aF~~c~~L~~i~lp~--~v~~I~~~------------------aF~~c~~L~~i~ 349 (394)
T 4fs7_A 293 FYGCSSLTEVKLLD--SVKFI-GEEAFESCTSLVSIDLPY--LVEEIGKR------------------SFRGCTSLSNIN 349 (394)
T ss_dssp TTTCTTCCEEEECT--TCCEE-CTTTTTTCTTCCEECCCT--TCCEECTT------------------TTTTCTTCCEEC
T ss_pred cccccccccccccc--cccee-chhhhcCCCCCCEEEeCC--cccEEhHH------------------hccCCCCCCEEE
Confidence 34566777777653 35555 333345677777776632 23332110 244678899998
Q ss_pred eCCCccccccCcCCCcccccCCCccEEEEec
Q 048518 183 LVSLTNIKKLWPDQFQGMYCCQNLTKVTVTR 213 (259)
Q Consensus 183 l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~ 213 (259)
+.. +++.+...+ ..+|++|+.+++..
T Consensus 350 lp~--~l~~I~~~a---F~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 350 FPL--SLRKIGANA---FQGCINLKKVELPK 375 (394)
T ss_dssp CCT--TCCEECTTT---BTTCTTCCEEEEEG
T ss_pred ECc--cccEehHHH---hhCCCCCCEEEECC
Confidence 865 477776665 45789999999854
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.08 E-value=0.0025 Score=48.45 Aligned_cols=122 Identities=11% Similarity=-0.020 Sum_probs=71.4
Q ss_pred cccCCCccEEEEecCCCceEecchh---hhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcC
Q 048518 103 DQSFSNLRIIYVYSCPKLKYLFSFS---MAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLE 179 (259)
Q Consensus 103 ~~~~~~L~~L~l~~c~~l~~~~~~~---~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~ 179 (259)
....++|++|++++|..+....... .....++|+.|++++|.--.. +...+ ...+...+.|+
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~------g~~~l---------~~~L~~n~~L~ 96 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP------VAFAL---------AEMLKVNNTLK 96 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHH------HHHHH---------HHHHHHCSSCC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChH------HHHHH---------HHHHHhCCCcC
Confidence 3467889999998874554321222 224568899999988753211 00000 00122357899
Q ss_pred EEeeCCCccccccCcCCC-cccccCCCccEEEE--ecCCCCCccCChh---HHhhcCCccEEEEeccc
Q 048518 180 ELELVSLTNIKKLWPDQF-QGMYCCQNLTKVTV--TRCCPLKYMFSYS---MANSLGQLRHLEIINCW 241 (259)
Q Consensus 180 ~L~l~~c~~l~~l~~~~~-~~~~~~~~L~~L~l--~~c~~l~~~~~~~---~~~~l~~L~~L~l~~c~ 241 (259)
.|+++++ .++.-..... ..+...++|++|++ +++ .+....... .+...+.|++|++++|.
T Consensus 97 ~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 97 SLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp EEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred EEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 9999998 4443211111 12445688999999 444 455532111 34456899999998874
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.54 E-value=0.24 Score=41.93 Aligned_cols=61 Identities=11% Similarity=0.256 Sum_probs=44.1
Q ss_pred ccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEecc
Q 048518 172 QVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINC 240 (259)
Q Consensus 172 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 240 (259)
+..+++|+.+.|.+ +++.+...+ ...|.+|+.+.+- .+++.++..+ ..+|.+|+.+++.+.
T Consensus 307 F~~c~~L~~i~lp~--~v~~I~~~a---F~~C~~L~~i~ip--~sv~~I~~~a-F~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 307 FAGCISLKSIDIPE--GITQILDDA---FAGCEQLERIAIP--SSVTKIPESA-FSNCTALNNIEYSGS 367 (394)
T ss_dssp TTTCTTCCEEECCT--TCCEECTTT---TTTCTTCCEEEEC--TTCCBCCGGG-GTTCTTCCEEEESSC
T ss_pred ecCCCCcCEEEeCC--cccEehHhH---hhCCCCCCEEEEC--cccCEEhHhH-hhCCCCCCEEEECCc
Confidence 34568899988864 477776655 4578899999984 3467775543 568899999988764
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.91 E-value=0.51 Score=39.54 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=34.8
Q ss_pred cccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEe
Q 048518 173 VTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEII 238 (259)
Q Consensus 173 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 238 (259)
..+++|+.+.+.+. .++.+.... ..+|.+|+.+++. .+++.++..+ ..+|.+|+++.+.
T Consensus 283 ~~c~~L~~i~l~~~-~i~~I~~~a---F~~c~~L~~i~lp--~~l~~I~~~a-F~~C~~L~~i~ip 341 (379)
T 4h09_A 283 SGCSNLTKVVMDNS-AIETLEPRV---FMDCVKLSSVTLP--TALKTIQVYA-FKNCKALSTISYP 341 (379)
T ss_dssp TTCTTCCEEEECCT-TCCEECTTT---TTTCTTCCEEECC--TTCCEECTTT-TTTCTTCCCCCCC
T ss_pred cccccccccccccc-ccceehhhh---hcCCCCCCEEEcC--ccccEEHHHH-hhCCCCCCEEEEC
Confidence 34677777777653 456665544 3456777777774 2355555433 3456666666653
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=93.28 E-value=0.078 Score=42.68 Aligned_cols=87 Identities=14% Similarity=0.071 Sum_probs=54.3
Q ss_pred hhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEeeCCCccccccCcCCCcccccCCCccEE
Q 048518 130 KNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKV 209 (259)
Q Consensus 130 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L 209 (259)
.++++|+.|+++++. +..+.... .....+|+|+.|+++++ .++.+..-. .+..+ +|+.|
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~----------------~~~~~l~~L~~L~Ls~N-~i~~~~~l~--~l~~l-~L~~L 225 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMS----------------SIVQKAPNLKILNLSGN-ELKSERELD--KIKGL-KLEEL 225 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGT----------------THHHHSTTCCEEECTTS-CCCSGGGGG--GGTTS-CCSEE
T ss_pred hhCCCCCEEECCCCC-CCCCccch----------------hHHhhCCCCCEEECCCC-ccCCchhhh--hcccC-CcceE
Confidence 468899999988853 33321100 01346899999999987 666552211 12233 89999
Q ss_pred EEecCCCCCccCCh-----hHHhhcCCccEEEE
Q 048518 210 TVTRCCPLKYMFSY-----SMANSLGQLRHLEI 237 (259)
Q Consensus 210 ~l~~c~~l~~~~~~-----~~~~~l~~L~~L~l 237 (259)
++.+++--...+.. .+...+|+|+.|+-
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 99998854333321 24677888888864
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.35 E-value=0.66 Score=39.18 Aligned_cols=38 Identities=16% Similarity=0.286 Sum_probs=28.5
Q ss_pred ccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecC
Q 048518 172 QVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRC 214 (259)
Q Consensus 172 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c 214 (259)
+..+++|+.+.|.+ +++.+...+ ..+|++|+.+++.+.
T Consensus 330 F~~C~~L~~i~ip~--sv~~I~~~a---F~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 330 FAGCEQLERIAIPS--SVTKIPESA---FSNCTALNNIEYSGS 367 (394)
T ss_dssp TTTCTTCCEEEECT--TCCBCCGGG---GTTCTTCCEEEESSC
T ss_pred hhCCCCCCEEEECc--ccCEEhHhH---hhCCCCCCEEEECCc
Confidence 44678999999964 477776655 457899999998753
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=92.20 E-value=0.099 Score=42.09 Aligned_cols=67 Identities=18% Similarity=0.070 Sum_probs=46.0
Q ss_pred cccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCCCCccCChhHHhhcCCccEEEEeccccc
Q 048518 173 VTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFSYSMANSLGQLRHLEIINCWSM 243 (259)
Q Consensus 173 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 243 (259)
.++|.|+.|+++++ .++.+..-. .....+++|+.|+++++. ++.+........+ +|++|++.+++--
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~-~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMS-SIVQKAPNLKILNLSGNE-LKSERELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGT-THHHHSTTCCEEECTTSC-CCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCC-CCCCCccch-hHHhhCCCCCEEECCCCc-cCCchhhhhcccC-CcceEEccCCcCc
Confidence 35899999999998 666653211 113468999999998755 5655332223333 8999999998743
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=90.60 E-value=1.3 Score=36.88 Aligned_cols=90 Identities=17% Similarity=0.272 Sum_probs=49.3
Q ss_pred ccCCCccEEEEecCCCceEecchhhhhhcCCCcEEEEEeccCcceecccCCCCCcccCCccccccCCCccccCCcCEEee
Q 048518 104 QSFSNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNCNKLKMMIGPDMEKPTTTQGFTEINAEDDQVTFPRLEELEL 183 (259)
Q Consensus 104 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l 183 (259)
..+.+|+.+.+.. +++.+ +...+.++++|+.+.+.+. .+..+.. ..+..+++|+.+.+
T Consensus 260 ~~~~~l~~i~l~~--~i~~i-~~~aF~~c~~L~~i~l~~~-~i~~I~~------------------~aF~~c~~L~~i~l 317 (379)
T 4h09_A 260 QNCTALKTLNFYA--KVKTV-PYLLCSGCSNLTKVVMDNS-AIETLEP------------------RVFMDCVKLSSVTL 317 (379)
T ss_dssp TTCTTCCEEEECC--CCSEE-CTTTTTTCTTCCEEEECCT-TCCEECT------------------TTTTTCTTCCEEEC
T ss_pred ceeehhccccccc--cceec-ccccccccccccccccccc-ccceehh------------------hhhcCCCCCCEEEc
Confidence 3455566666542 34444 3333455666666666432 1222211 02445788999888
Q ss_pred CCCccccccCcCCCcccccCCCccEEEEecCCCCCccCC
Q 048518 184 VSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCPLKYMFS 222 (259)
Q Consensus 184 ~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 222 (259)
.+ +++.|...+ ..+|.+|+.+.+- .+++.+..
T Consensus 318 p~--~l~~I~~~a---F~~C~~L~~i~ip--~~v~~I~~ 349 (379)
T 4h09_A 318 PT--ALKTIQVYA---FKNCKALSTISYP--KSITLIES 349 (379)
T ss_dssp CT--TCCEECTTT---TTTCTTCCCCCCC--TTCCEECT
T ss_pred Cc--cccEEHHHH---hhCCCCCCEEEEC--CccCEEch
Confidence 64 477776655 4467788877763 23555544
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=73.28 E-value=3.4 Score=28.89 Aligned_cols=37 Identities=19% Similarity=0.069 Sum_probs=28.8
Q ss_pred CCcCEEeeCCCccccccCcCCCcccccCCCccEEEEecCCC
Q 048518 176 PRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTRCCP 216 (259)
Q Consensus 176 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~ 216 (259)
+.|+.|+++++ .++.+.... +..+++|+.|++.+.+.
T Consensus 31 ~~l~~L~Ls~N-~l~~l~~~~---f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 31 VDTTELVLTGN-NLTALPPGL---LDALPALRTAHLGANPW 67 (130)
T ss_dssp TTCSEEECTTS-CCSSCCTTT---GGGCTTCCEEECCSSCC
T ss_pred cCCCEEECCCC-cCCccChhh---hhhccccCEEEecCCCe
Confidence 36999999987 788876655 44678899999988765
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=72.07 E-value=2.4 Score=29.66 Aligned_cols=35 Identities=11% Similarity=0.073 Sum_probs=21.5
Q ss_pred CCccEEEEecCCCceEecchhhhhhcCCCcEEEEEec
Q 048518 107 SNLRIIYVYSCPKLKYLFSFSMAKNLLGLQKVEVVNC 143 (259)
Q Consensus 107 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 143 (259)
++|++|++++. .++.+ +...+..+++|+.|++.++
T Consensus 31 ~~l~~L~Ls~N-~l~~l-~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 31 VDTTELVLTGN-NLTAL-PPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TTCSEEECTTS-CCSSC-CTTTGGGCTTCCEEECCSS
T ss_pred cCCCEEECCCC-cCCcc-ChhhhhhccccCEEEecCC
Confidence 35777777665 45555 4444556777777776654
No 163
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.30 E-value=63 Score=21.14 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=26.4
Q ss_pred ccccCCcCEEeeCCCccccccCcCCCcccccCCCccEEEEec
Q 048518 172 QVTFPRLEELELVSLTNIKKLWPDQFQGMYCCQNLTKVTVTR 213 (259)
Q Consensus 172 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~ 213 (259)
+..+.+|+.+.|-. .++.|...+ ...|.+|+.+.+..
T Consensus 16 F~~c~~L~~i~iP~--~v~~Ig~~a---F~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQP--NIGLLYDGM---FSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECT--TSSCCCTTS---STTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCC--chheEcHHH---HhccCCccEEEEcC
Confidence 34567888888875 467776655 45788888888865
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=22.59 E-value=33 Score=25.82 Aligned_cols=65 Identities=8% Similarity=0.039 Sum_probs=30.7
Q ss_pred CcccEeecccccccccccccccc-CcccCCCccEEEEecCCCceEecc---hhhhhhcCCCcEEEEEecc
Q 048518 79 PLLESLDLINLTNLETICYSQLR-EDQSFSNLRIIYVYSCPKLKYLFS---FSMAKNLLGLQKVEVVNCN 144 (259)
Q Consensus 79 ~~L~~L~l~~~~~l~~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~ 144 (259)
+.|+.|++++...+.......+. ....-..|+.|++++| .+.+... ...++.-+.|+.|+++++.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 56666666554333322111111 1234456777777766 3332211 1122344667777777643
Done!