BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048519
(195 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|147838590|emb|CAN76580.1| hypothetical protein VITISV_025642 [Vitis vinifera]
Length = 1046
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 70/108 (64%), Gaps = 9/108 (8%)
Query: 95 ESWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQ---- 150
+SW D KHK+KQ+SL+D IIHIRIEE+N+ RD +KAKE S AN++E P+
Sbjct: 140 KSWKDXXXNMKHKRKQMSLEDVIIHIRIEEQNRNRDNVEKAKELSSKANVVEEKPKPKNN 199
Query: 151 LNKTQN---NPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHKAQ 195
++ QN PN SN ++ K+GNCFVCGK H+A QCRH+ +
Sbjct: 200 RSRKQNFRTKPN--ASNKVQQSTIKKRGNCFVCGKSRHHAAQCRHRKR 245
Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 40 PDASKIELFNGEKFKCWQEKVFHVLHVYNLADYLQSSLLEEGTEDYDKKLQTW 92
P+ SKI+ FNG FK WQE+VF + V L L LE+G+ L TW
Sbjct: 10 PNTSKIDPFNGTFFKRWQERVFATIDVVXLGHILTDPKLEDGSH----LLPTW 58
>gi|147780036|emb|CAN62301.1| hypothetical protein VITISV_034115 [Vitis vinifera]
Length = 588
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 64/108 (59%), Gaps = 9/108 (8%)
Query: 95 ESWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIE-------N 147
ESW DY KHK+KQ+ L+D IIHIRIEE+N RD +KAKE S AN++E N
Sbjct: 43 ESWKDYKNNMKHKRKQMFLEDVIIHIRIEEQNLNRDNIEKAKELSSKANVVEEKSKPKNN 102
Query: 148 TPQLNKTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHKAQ 195
+ +Q PN SN K GNCFVCGK H+A QCRH+ +
Sbjct: 103 RSRKQNSQTKPN--ASNKVHNSTIKKWGNCFVCGKSGHHAPQCRHRKR 148
>gi|147807877|emb|CAN75361.1| hypothetical protein VITISV_012860 [Vitis vinifera]
Length = 663
Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 59/95 (62%), Gaps = 9/95 (9%)
Query: 105 KHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIE-------NTPQLNKTQNN 157
KHK+KQ+SL+D IIHIRIEE+N+ RD +K KE S AN++E N + ++
Sbjct: 158 KHKRKQISLEDVIIHIRIEEQNRNRDNVEKTKELSSKANVVEEKXKPKNNRSEKXNSRTK 217
Query: 158 PNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRH 192
PN SN + K+GNCFVCGK H+A Q RH
Sbjct: 218 PNA--SNKVQNPTIKKRGNCFVCGKSGHHATQYRH 250
>gi|147791706|emb|CAN64015.1| hypothetical protein VITISV_031523 [Vitis vinifera]
Length = 272
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 65/104 (62%), Gaps = 5/104 (4%)
Query: 95 ESWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIE--NTPQLN 152
ESW DY KHKKKQ+SL+D IIHIRIEE+N+ +D +KAKE S AN++E + P+ N
Sbjct: 67 ESWKDYKNNMKHKKKQMSLEDVIIHIRIEEQNRNKDNIEKAKELSSKANVVEEKSKPKNN 126
Query: 153 KTQNNPNDGHSNNPKRL---IANKKGNCFVCGKIIHYANQCRHK 193
+++ + SN ++ K+GN V GK H A QC H+
Sbjct: 127 RSRKQNSRTKSNASNKVQNSTIKKRGNFCVYGKSRHCAVQCHHR 170
>gi|147846834|emb|CAN80619.1| hypothetical protein VITISV_005064 [Vitis vinifera]
Length = 965
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 85/203 (41%), Gaps = 61/203 (30%)
Query: 40 PDASKIELFNGEKFKCWQEKVFHVLHVYNLADYLQSSLLEEGTEDYDKKLQTWNA----- 94
P SKI+ FN FK WQE VF + V NL L E+G E L TW
Sbjct: 10 PKTSKIDPFNRTLFKKWQEIVFSAIDVMNLGHILTDPKPEDGFES----LPTWEIGNKQV 65
Query: 95 -------------------------------------ESWGDYIKTSKHKKKQVSLKDAI 117
ESW DY KHK+KQ+
Sbjct: 66 RHDILSIFSNELFDVYSIEDIKLPKPLVVGYLVETLLESWKDYKNNMKHKRKQM------ 119
Query: 118 IHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQ----LNKTQNNPND-GHSNNPKRLIAN 172
IE++N+ RD +KAKE S AN+IE P+ +K QN+ SN +
Sbjct: 120 ----IEKQNQNRDNVEKAKELSSKANVIEEKPKPKNNRSKKQNSRTKLNASNKVQNPTIK 175
Query: 173 KKGNCFVCGKIIHYANQCRHKAQ 195
K+G+CFV GK H+A QCRHK +
Sbjct: 176 KRGDCFVYGKFGHHAAQCRHKKR 198
>gi|147826517|emb|CAN64075.1| hypothetical protein VITISV_017997 [Vitis vinifera]
Length = 635
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 58/90 (64%), Gaps = 9/90 (10%)
Query: 111 VSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIE--NTPQLNK-----TQNNPNDGHS 163
+SLKD IIHIRIEE+N+ RD +KAKE S AN++E + P+ N+ ++ PN S
Sbjct: 1 MSLKDVIIHIRIEEQNRNRDNIEKAKELSSKANVVEEKSKPKNNRSRKQNSRTKPN--AS 58
Query: 164 NNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
N + K GNCFVCGK H+A QCRH+
Sbjct: 59 NKVQNSTIKKXGNCFVCGKSGHHAAQCRHR 88
>gi|38194910|gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]
Length = 1290
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 63/111 (56%), Gaps = 13/111 (11%)
Query: 95 ESWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKT 154
+SW DY + KH++KQ+SL D I HI IE+ N+ KAK + AN+IE+ P +
Sbjct: 183 QSWTDYKQQLKHRQKQMSLSDLITHIIIEDTNRKECAAAKAKALSAKANVIEDKPAPKRY 242
Query: 155 Q------NNPNDGHS----NNPKRLIANKKGNCFVCGKIIHYANQCRHKAQ 195
+ PN+ S NP KKGNCFVCGK H+A QCRH+A+
Sbjct: 243 EKKFDHKKKPNNKFSRPSGTNP---TFKKKGNCFVCGKPGHHAPQCRHRAK 290
Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 30 ASTSNTGKNLPDASKIELFNGEKFKCWQEKVFHVLHVYNLADYLQSS 76
A+ + K PD SKIE+F G+ F+ WQE+V +L +Y +A L ++
Sbjct: 21 ATQTIFAKLFPDVSKIEVFTGQNFRRWQERVSTLLDMYGVAHALTTA 67
>gi|147781792|emb|CAN72171.1| hypothetical protein VITISV_036207 [Vitis vinifera]
Length = 1096
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 46/72 (63%), Gaps = 7/72 (9%)
Query: 95 ESWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIE-------N 147
ESW DY KHK KQ+SL+D IIHIRIEE+N+ RD +KAKE S AN++E N
Sbjct: 160 ESWKDYKNNMKHKMKQMSLEDVIIHIRIEEQNRNRDNIEKAKELSSKANVVEEKSKPKNN 219
Query: 148 TPQLNKTQNNPN 159
++ KT + N
Sbjct: 220 RKRIEKTSSKAN 231
Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 40 PDASKIELFNGEKFKCWQEKVFHVLHVYNLADYLQSSLLEEGTEDYDKKLQTW 92
PD SKI+ FNG FK W E+VF + V NL L++ +D L TW
Sbjct: 10 PDTSKIDPFNGTFFKRWHERVFSAIDVVNLGHI----LIDPKPKDGSHLLPTW 58
>gi|359493505|ref|XP_002263348.2| PREDICTED: wall-associated receptor kinase 2-like [Vitis vinifera]
Length = 1182
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSN-ANLIE--NTPQLN 152
SW Y K HK + SL++ H+RIEE+ + RD + +N AN + N P+
Sbjct: 164 SWKGYRKRILHKSEDYSLEEIQKHLRIEEELRSRDKMAEESNGGTNKANAVSKANHPRGK 223
Query: 153 KTQNNPNDGHSNNPKR---LIANKKGNCFVCGKIIHYANQCRHK 193
+ N G+ +PK+ KKG CFVCGK+ HYA +CR++
Sbjct: 224 NNNDKRNSGNYMSPKKNQEQFKGKKGPCFVCGKLGHYARECRYR 267
>gi|359497847|ref|XP_003635668.1| PREDICTED: uncharacterized protein LOC100854178, partial [Vitis
vinifera]
Length = 478
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN-KT 154
+W D+ KHK+K++S++D II +RIEE N+ + + AN +E+ N KT
Sbjct: 195 AWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGAHTLNEAKANFVEHGQSSNAKT 254
Query: 155 QNNPNDGHSNNPKRLIANK---KGNCFVCGKIIHYANQCR 191
NN G PK I+ K +G CF CGK H + CR
Sbjct: 255 NNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDCR 294
>gi|147827069|emb|CAN77568.1| hypothetical protein VITISV_010611 [Vitis vinifera]
Length = 1067
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRD-VFDKAKEFRSNANLIE--NTPQLN 152
SW Y K HK + SL++ H+RIEE+++ RD + +++ + AN + N P+
Sbjct: 163 SWKGYRKRILHKSEDYSLEEIQKHLRIEEESRSRDKMVEESNGGTNKANAVSKANHPRGK 222
Query: 153 KTQNNPNDGHSNNPKRL---IANKKGNCFVCGKIIHYANQCRHK 193
+ N G+ +PK+ KK CFVCGK HYA +CR++
Sbjct: 223 NNXDKRNSGNYMSPKKXQEQFKGKKXPCFVCGKXGHYARECRYR 266
>gi|147767180|emb|CAN66959.1| hypothetical protein VITISV_013138 [Vitis vinifera]
Length = 1234
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRD-VFDKAKEFRSNANLIE--NTPQLN 152
SW Y K HK + SL++ H+RIEE+++ RD + +++ + AN I N P+
Sbjct: 172 SWKGYRKRILHKSEDYSLEEIQKHLRIEEESRSRDKMVEESNGGTNKANAISKANHPRGK 231
Query: 153 KTQNNPNDGHSNNPKR---LIANKKGNCFVCGKIIHYANQCRHK 193
N N G+ +PK+ KKG CFVCGK HYA +CR +
Sbjct: 232 NNNNKKNSGNYMSPKKNQEQFKGKKGXCFVCGKPGHYARECRFR 275
>gi|9309363|dbj|BAB03249.1| polyprotein [Oryza sativa]
Length = 1268
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 127 SWSDFATSLKHKRQEFSVLDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQ--------K 178
Query: 156 NNPNDGHSNNP--------------KRLIANKKGNCFVCGKIIHYANQC 190
NP+ H+N K+ G+CFVCGK H+A C
Sbjct: 179 KNPHASHNNKKVKPDVKPKAATNFKKKSKGKANGDCFVCGKSGHWAKDC 227
>gi|147804859|emb|CAN66873.1| hypothetical protein VITISV_021427 [Vitis vinifera]
Length = 1473
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRD-VFDKAKEFRSNANLIE--NTPQLN 152
SW Y K HK + SL++ H+RIEE+++ RD + +++ + AN I N P+
Sbjct: 172 SWKGYRKRILHKSEDYSLEEIQKHLRIEEESRSRDKMVEESNGGTNKANAISKANHPRGK 231
Query: 153 KTQNNPNDGHSNNPKR---LIANKKGNCFVCGKIIHYANQCRHK 193
N N G+ +PK+ KKG CFVCGK HYA +CR +
Sbjct: 232 NNNNKKNSGNYMSPKKNQEQFKGKKGPCFVCGKPGHYARECRFR 275
>gi|19881576|gb|AAM00977.1|AC090482_6 Putative retroelement [Oryza sativa Japonica Group]
gi|31431306|gb|AAP53108.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 493
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +DV K + S+AN+++ +
Sbjct: 308 SWSDFATSLKHKRQEFSVSDLIGSLGVEEKARAKDVRGKKVKGGSSANMVQ--------K 359
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N +L K +CFVCGK H+A C
Sbjct: 360 KNPHASHNNKKVKLYVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDC 408
>gi|147818102|emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera]
Length = 1277
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN-KT 154
+W D+ KHK+K++S++D II +RIEE N+ + + AN +E+ KT
Sbjct: 195 AWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGAHTLNEAQANFVEHGQSSKAKT 254
Query: 155 QNNPNDGHSNNPKRLIANK---KGNCFVCGKIIHYANQCR 191
NN G PK I+ K +G CF CGK H + CR
Sbjct: 255 NNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDCR 294
>gi|147767446|emb|CAN62437.1| hypothetical protein VITISV_010848 [Vitis vinifera]
Length = 622
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 36/50 (72%)
Query: 95 ESWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANL 144
ESW DY KHK+KQ+ L+D IIHI+IEE+N+ RD +K KE S AN+
Sbjct: 67 ESWKDYKNNMKHKRKQMFLEDVIIHIKIEEQNRNRDNAEKVKELSSKANV 116
>gi|147809962|emb|CAN76029.1| hypothetical protein VITISV_016069 [Vitis vinifera]
Length = 1096
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 84/204 (41%), Gaps = 54/204 (26%)
Query: 42 ASKIELFNGEKFKCWQEKVFHVL----------------HVYN-LADYLQSSLLEEGT-- 82
K E F+G FK WQ+K+ L +V N LAD L + ++ T
Sbjct: 12 GEKPEKFSGLNFKRWQQKMLFYLTTAIDAWKHSDFLCRNYVMNGLADSLYNVYSDKKTAK 71
Query: 83 ---EDYDKKLQTWNAES----------------------------WGDYIKTSKHKKKQV 111
E D+K +T +A + W D+ KHK+K++
Sbjct: 72 ELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVLLLRNYPLPWKDFKNYLKHKRKEM 131
Query: 112 SLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN-KTQNNPNDGHSNNPKRLI 170
S++D II +RIEE N+ + + AN +E+ KT NN G PK I
Sbjct: 132 SIEDLIIRLRIEEDNRRSEKKGAHTLNEAKANFVEHGQSSKAKTNNNKGKGSKLGPKGGI 191
Query: 171 ANK---KGNCFVCGKIIHYANQCR 191
+ K +G CF CGK H + CR
Sbjct: 192 SKKPKFQGKCFNCGKQGHKSVDCR 215
>gi|147804664|emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]
Length = 1316
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN-KT 154
+W D+ KHK+K++S++D II +RIEE N+ + + AN +E+ KT
Sbjct: 195 AWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGAHTLNEAKANFVEHGQSSKAKT 254
Query: 155 QNNPNDGHSNNPKRLIANK---KGNCFVCGKIIHYANQCR 191
NN G PK I+ K +G CF CGK H + CR
Sbjct: 255 NNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDCR 294
>gi|359476117|ref|XP_003631792.1| PREDICTED: uncharacterized protein LOC100252656 [Vitis vinifera]
Length = 946
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN-KT 154
+W D+ KHK+K++S++D II +RIEE N+ + + AN +E+ KT
Sbjct: 195 AWKDFKNCLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGVHTLNEAKANFVEHGQSSKAKT 254
Query: 155 QNNPNDGHSNNPKRLIANK---KGNCFVCGKIIHYANQCR 191
NN G PK I+ K +G CF CGK H + CR
Sbjct: 255 NNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDCR 294
>gi|218186479|gb|EEC68906.1| hypothetical protein OsI_37574 [Oryza sativa Indica Group]
Length = 342
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +D++ K E S+AN+++ + +
Sbjct: 127 SWSDFATSLKHKRQEFSVIDLIGSLGVEEKARAKDIWGKKVEGGSSANMVQKK-NPHASH 185
Query: 156 NNPNDGHSNNPKRLI-------ANKKGNCFVCGKIIHYANQC 190
NN H PK KG+CFVCGK H+A C
Sbjct: 186 NNKKVKHDVKPKATTNFKKKGKGKAKGDCFVCGKPGHWAKDC 227
>gi|68611257|emb|CAE01619.3| OSJNBa0042L16.8 [Oryza sativa Japonica Group]
Length = 1110
Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 253 SWSDFATSLKHKRQEFSVSDFIGSLGVEEKARAKDVRGKKVEGGSSANMVQ--------K 304
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 305 KNPHVSHNNKKVKPDVKSKAATNFKKKGKRKAKGDCFVCGKSGHWAKDC 353
>gi|147857754|emb|CAN78666.1| hypothetical protein VITISV_032507 [Vitis vinifera]
Length = 804
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRD-VFDKAKEFRSNANLIE--NTPQLN 152
SW Y K HK + SL++ H+RI+E+++ RD + +++ + AN I N P+
Sbjct: 172 SWKGYRKRILHKSEDYSLEEIQKHLRIKEESRSRDKMVEESNGGTNKANAISKANHPRGK 231
Query: 153 KTQNNPNDGHSNNPKR---LIANKKGNCFVCGKIIHYANQCRHK 193
N N G+ +PK+ KKG CFVCGK HYA +CR +
Sbjct: 232 NNNNKKNSGNYMSPKKNQEQFKGKKGPCFVCGKPGHYARECRFR 275
>gi|147838519|emb|CAN69855.1| hypothetical protein VITISV_041230 [Vitis vinifera]
Length = 1236
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRD-VFDKAKEFRSNANLIE--NTPQLN 152
SW Y K HK + SL++ H+ IEE+++ RD + +++ + AN + N P+
Sbjct: 124 SWKGYRKRIXHKSEDYSLEEIQKHLXIEEESRSRDKMVEESNXGTNKANAVSKXNHPRXK 183
Query: 153 KTQNNPNDGHSNNPKR---LIANKKGNCFVCGKIIHYANQCRHK 193
+ N G+ +PK+ KKG CFVCGK HY +CR++
Sbjct: 184 NNNDKXNSGNYMSPKKNQEQFKGKKGPCFVCGKPEHYVRECRYR 227
>gi|108707890|gb|ABF95685.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1061
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 24/111 (21%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK +++D K E S+ANL++ +
Sbjct: 231 SWSDFATSLKHKRQEFSVTDLIGSLGVEEKARVKDNRGKNIEGGSSANLVQ--------K 282
Query: 156 NNPNDGHSNN----------------PKRLIANKKGNCFVCGKIIHYANQC 190
NP+ H+NN K+ KG+CFVCGK H+A C
Sbjct: 283 KNPHASHNNNNKKVKPDVKPKATTNFKKKGKGKAKGDCFVCGKPGHWAKNC 333
>gi|13129472|gb|AAK13130.1|AC083945_5 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1363
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 23/110 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + IEEK + +D K E S+ANL++ +
Sbjct: 312 SWSDFATSLKHKRQEFSVTDLIGSLGIEEKARAKDNRGKKIEGGSSANLVQ--------K 363
Query: 156 NNPNDGHSNN---------------PKRLIANKKGNCFVCGKIIHYANQC 190
NNP+ H+NN K+ KG+CFVCGK H+A C
Sbjct: 364 NNPHASHNNNKKVKPDVKPKATTNFKKKGKGKAKGDCFVCGKPGHWAKDC 413
>gi|78708356|gb|ABB47331.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1022
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 23/110 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + IEEK + +D K E S+ANL++ +
Sbjct: 192 SWSDFATSLKHKRQEFSVTDLIGSLGIEEKARAKDNRGKKIEGGSSANLVQ--------K 243
Query: 156 NNPNDGHSNN---------------PKRLIANKKGNCFVCGKIIHYANQC 190
NNP+ H+NN K+ KG+CFVCGK H+A C
Sbjct: 244 NNPHASHNNNKKVKPDVKPKATTNFKKKGKGKAKGDCFVCGKPGHWAKDC 293
>gi|38347189|emb|CAD37106.2| OSJNBa0024J22.17 [Oryza sativa Japonica Group]
Length = 1200
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 275 SWSDFATSLKHKRQEFSISDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQ--------K 326
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 327 KNPHASHNNKKVKPDVKPKAATNFKKKGKGKAKVDCFVCGKSGHWAKDC 375
>gi|116309544|emb|CAH66607.1| H0211A12.10 [Oryza sativa Indica Group]
Length = 1200
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 275 SWSDFATSLKHKRQEFSISDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQ--------K 326
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 327 KNPHASHNNKKVKPDVKPKAATNFKKKGKGKAKVDCFVCGKSGHWAKDC 375
>gi|116634841|emb|CAH67291.1| OSIGBa0103O01.9 [Oryza sativa Indica Group]
Length = 857
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 24/111 (21%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + ++ K E S+ANL++ +
Sbjct: 113 SWSDFATSLKHKRQEFSVIDLIGSLGVEEKARAKENRGKNIEGGSSANLVQ--------K 164
Query: 156 NNPNDGHSNNPKRLIANKK----------------GNCFVCGKIIHYANQC 190
NP+ H+NN K++ ++ K G+CFVCGK H+A C
Sbjct: 165 KNPHASHNNNNKKVKSDVKPKATTNFKKKGKGNAKGDCFVCGKPRHWAKNC 215
>gi|38345425|emb|CAD41546.2| OSJNBb0091E11.16 [Oryza sativa Japonica Group]
Length = 839
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 24/111 (21%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + ++ K E S+ANL++ +
Sbjct: 113 SWSDFATSLKHKRQEFSVIDLIGSLGVEEKARAKENRGKNIEGGSSANLVQ--------K 164
Query: 156 NNPNDGHSNNPKRLIANKK----------------GNCFVCGKIIHYANQC 190
NP+ H+NN K++ ++ K G+CFVCGK H+A C
Sbjct: 165 KNPHASHNNNNKKVKSDVKPKATTNFKKKGKGKAKGDCFVCGKPRHWAKNC 215
>gi|50838985|gb|AAT81746.1| integrase core domain containing protein [Oryza sativa Japonica
Group]
gi|108708962|gb|ABF96757.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1232
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +D K E S+AN+++ +
Sbjct: 243 SWSDFATSLKHKRQEFSVSDLIGSLGVEEKARAKDNRHKKVEGGSSANMVQ--------K 294
Query: 156 NNPNDGHSN-------NPKRLI-------ANKKGNCFVCGKIIHYANQC 190
NP+ H+N PK G+CFVCGK H+A C
Sbjct: 295 KNPHASHNNKKVKPDGKPKATTNFKKKGKGKANGDCFVCGKSGHWAKDC 343
>gi|50080289|gb|AAT69624.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1401
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 309 SWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQ--------K 360
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 361 KNPHASHNNKKVKPDVKPKAATNFKKKGKGKTKGDCFVCGKSGHWAKDC 409
>gi|38344706|emb|CAE05248.2| OSJNBb0115I09.10 [Oryza sativa Japonica Group]
Length = 1321
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 192 SWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQ--------K 243
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 244 KNPHASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAKDC 292
>gi|113205226|gb|ABI34306.1| Polyprotein, putative [Solanum demissum]
Length = 1691
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 21/121 (17%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKE--FRSNANLIEN---TPQ 150
SW ++ KT +HK+K+ SL+ I+ IR+EE+ + +D + +E + NLI + TP+
Sbjct: 161 SWKEFQKTMRHKQKETSLETLIMKIRMEEEARGQDALLQTEENNITTKVNLITSNNATPE 220
Query: 151 LNK-----------TQNNPNDGHSNNPKRLIANK-----KGNCFVCGKIIHYANQCRHKA 194
+K +NN NN + + A KG CFVCGK H A CR +
Sbjct: 221 SHKNTSLKPKKKKFKKNNGRPPKKNNGENIQAQNQQVQDKGPCFVCGKSGHIARFCRFRK 280
Query: 195 Q 195
+
Sbjct: 281 R 281
>gi|77556089|gb|ABA98885.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1452
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 315 SWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQ--------K 366
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 367 KNPHASHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDC 415
>gi|41469360|gb|AAS07202.1| putative integrase [Oryza sativa Japonica Group]
gi|108708916|gb|ABF96711.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1456
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 315 SWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQ--------K 366
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 367 KNPHASHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDC 415
>gi|77555989|gb|ABA98785.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1303
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 272 SWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQ--------K 323
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 324 KNPHASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAKDC 372
>gi|20303592|gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa Japonica Group]
Length = 1394
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 253 SWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQ--------K 304
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 305 KNPHASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAKDC 353
>gi|10140704|gb|AAG13538.1|AC023240_11 putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1408
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 267 SWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQ--------K 318
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 319 KNPHASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAKDC 367
>gi|110289309|gb|AAP54390.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1479
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 338 SWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQ--------K 389
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 390 KNPHASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAKDC 438
>gi|54291731|gb|AAV32100.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1388
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 302 SWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQ--------K 353
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 354 KNPHASHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDC 402
>gi|116309875|emb|CAH66912.1| OSIGBa0126B18.5 [Oryza sativa Indica Group]
Length = 1413
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 272 SWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQ--------K 323
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 324 KNPHASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAKDC 372
>gi|108862128|gb|ABG21864.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1297
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 229 SWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQ--------K 280
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 281 KNPHASHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDC 329
>gi|108711361|gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1413
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 272 SWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQ--------K 323
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 324 KNPHASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAKDC 372
>gi|77554328|gb|ABA97124.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1453
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 312 SWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQ--------K 363
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 364 KNPHASHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDC 412
>gi|77555288|gb|ABA98084.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1298
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 272 SWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQ--------K 323
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 324 KNPHASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAKDC 372
>gi|55416038|gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group]
Length = 1268
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 127 SWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQ--------K 178
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 179 KNPHASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAKDC 227
>gi|31415906|gb|AAP50927.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108708705|gb|ABF96500.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1240
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 127 SWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQ--------K 178
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 179 KNPHASHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDC 227
>gi|77557017|gb|ABA99813.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1448
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 307 SWSDFATSLKHKRQEFSVSDLIGSLGVEEKARAKDVRGKKVEGCSSANMVQ--------K 358
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 359 KNPHASHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDC 407
>gi|147782562|emb|CAN68340.1| hypothetical protein VITISV_025981 [Vitis vinifera]
Length = 791
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRD-VFDKAKEFRSNANLIE--NTPQLN 152
SW Y K HK + SL++ H+RIEE+++ RD + +++ + AN + N P+
Sbjct: 172 SWKGYRKRILHKSEDYSLEEIQKHLRIEEESRSRDKMVEESNGGTNKANAVSKANHPKGK 231
Query: 153 KTQNNPNDGHSNNPKR---LIANKKGNCFVCGKIIHYANQCRHK 193
N N G+ +PK+ KKG CFVCGK HYA +CR++
Sbjct: 232 NNNNKKNSGNYMSPKKNQEQFKGKKGLCFVCGKPGHYARECRYR 275
>gi|108706869|gb|ABF94664.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1286
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 22/112 (19%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +D+ K E S+AN+++ +
Sbjct: 303 SWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDIRGKKVEGGSSANMVQ--------K 354
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQCRHK 193
NP+ H+N + K +CFVCGK H+A C +
Sbjct: 355 KNPHASHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDCLER 406
>gi|38344416|emb|CAE02382.2| OSJNBb0080H08.8 [Oryza sativa Japonica Group]
Length = 1183
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 24/111 (21%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +D K E S+ANL++N
Sbjct: 324 SWSDFATSLKHKRQEFSVTDLIGSLGVEEKARAKDNRGKNIEGGSSANLVQN-------- 375
Query: 156 NNPNDGHSNN----------------PKRLIANKKGNCFVCGKIIHYANQC 190
NP+ H+NN K+ KG+CFVCGK H+A C
Sbjct: 376 KNPHASHNNNKKKVKPDVKPKATTNFKKKGKGKAKGDCFVCGKPGHWAKNC 426
>gi|31432391|gb|AAP54028.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1361
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +D+ K E S+AN+++ +
Sbjct: 294 SWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDIRGKKVEGGSSANMVQ--------K 345
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 346 KNPHASHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDC 394
>gi|62734178|gb|AAX96287.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
gi|62734227|gb|AAX96336.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
gi|77549796|gb|ABA92593.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1099
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D + KHK+++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 293 SWSDLATSLKHKRQEFSVSDLIGSLGVEEKARTKDVRGKKVEGGSSANMVQ--------K 344
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 345 KNPHASHNNKKVKPDVKPKAATNFKNKGKGKAKGDCFVCGKSGHWAKDC 393
>gi|77548324|gb|ABA91121.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1186
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 315 SWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQ--------K 366
Query: 156 NNPNDGHSNN--------------PKRLIANKKGNCFVCGKIIHYANQC 190
NP+ H+N K+ KG+CFVCGK H+A C
Sbjct: 367 KNPHASHNNKKVKPDVKPKVATNFKKKGKGKAKGDCFVCGKSGHWAKDC 415
>gi|18997231|gb|AAL83348.1|AC074282_15 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|31429942|gb|AAP51926.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
[Oryza sativa Japonica Group]
Length = 1109
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
+W D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 262 AWSDFATSLKHKRQEFSVSDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQ--------K 313
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 314 KNPHASHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDC 362
>gi|222640791|gb|EEE68923.1| hypothetical protein OsJ_27787 [Oryza sativa Japonica Group]
Length = 349
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 29 SWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQ--------K 80
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 81 KNPHASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAKDC 129
>gi|108862423|gb|ABA96959.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 920
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 44 SWLDFATSLKHKRQEFSVSDLIGSLGVEEKARAKDVRGKRVEGGSSANMVQ--------K 95
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 96 KNPHASHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDC 144
>gi|218184065|gb|EEC66492.1| hypothetical protein OsI_32588 [Oryza sativa Indica Group]
Length = 374
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
+W D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 173 TWSDFATSLKHKRQEFSVSDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQ--------K 224
Query: 156 NNPNDGHSNNPKRLIANKKGN--------------CFVCGKIIHYANQC 190
NP+ H+N + K CFVCGK H+A C
Sbjct: 225 KNPHASHNNKKVKPDVKPKAATNFKKKGKGKAKGYCFVCGKSGHWAKDC 273
>gi|29027729|dbj|BAC65862.1| hypothetical polyprotein [Oryza sativa Japonica Group]
Length = 1268
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 23/110 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + IEEK + +D K E S+ANL++ +
Sbjct: 127 SWSDFATSLKHKRQEFSVTDLIGSLGIEEKARAKDNRGKKIEGGSSANLVQ--------K 178
Query: 156 NNPNDGHSNN---------------PKRLIANKKGNCFVCGKIIHYANQC 190
NP+ H+NN K+ KG+CFVCGK H+A C
Sbjct: 179 KNPHASHNNNKKVKPDVKPKATTNFKKKGKGKAKGDCFVCGKPGHWAKDC 228
>gi|77553336|gb|ABA96132.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1357
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + DV K E S+AN+++ +
Sbjct: 228 SWSDFATSLKHKRQEFSVPDLIGSLGVEEKARANDVRGKKVEGGSSANMVQ--------K 279
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 280 KNPHASHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDC 328
>gi|147828230|emb|CAN66576.1| hypothetical protein VITISV_016964 [Vitis vinifera]
Length = 1316
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 97 WGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQN 156
W D+ KHK+K+++L++ I+ +RIEE N+ + + AN+IE P+ NK +
Sbjct: 366 WKDFKNYLKHKRKEMNLEELIVRLRIEEDNR-KSEKKGNNSMEAKANVIEQGPKTNKKRK 424
Query: 157 NPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCR 191
+ D + N + KG C+ CGK H +N R
Sbjct: 425 H-GDQNQNQESNVAKKFKGKCYNCGKTGHKSNDYR 458
Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 8 LATAPIALAAP---RLLDLFVYDLLASTSNT-GKNLPDASKIELFNGEKFKCWQEKVFHV 63
L A + ++ P R + + + +AS+SN NL K E FNG +FK WQ+K+
Sbjct: 1215 LECAYLGISIPIPNRFMTIPNRNQMASSSNVPTMNLTHGEKPEKFNGNEFKRWQQKMLFY 1274
Query: 64 LHVYNLADYL--QSSLLEEGTEDYDK 87
L NLA +L + +LEEG + +K
Sbjct: 1275 LTTLNLARFLHEECPILEEGETNKEK 1300
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 29 LASTSNTG-KNLPDASKIELFNGEKFKCWQEKVFHVLHVYNLADYL--QSSLLEEGTEDY 85
+AS+SN NL K E FNG +FK WQ+K+ L NLA +L + +LEEG +
Sbjct: 194 MASSSNVPIMNLIHGEKPEKFNGNEFKRWQQKMLFYLTTLNLARFLHEECPILEEGETNK 253
Query: 86 DK 87
+K
Sbjct: 254 EK 255
>gi|218197570|gb|EEC79997.1| hypothetical protein OsI_21648 [Oryza sativa Indica Group]
Length = 382
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+ + S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 80 SWSDFATSLKHKRPEFSVSDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQ--------K 131
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 132 KNPHASHNNKKVKPDVKPKAVTNFKKKGKGKAKGDCFVCGKSGHWAKDC 180
>gi|77553430|gb|ABA96226.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 975
Score = 52.8 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN+++ + +
Sbjct: 127 SWSDFATSLKHKRQEFSVSDLIGSLGVEEKVRAKDVRGKKVEGGSSANMVQKKNS-HASH 185
Query: 156 NN-------PNDGHSNNPKRLIANKKGNCFVCGKIIHYANQC 190
NN +N K+ KG+CFVCGK H+A C
Sbjct: 186 NNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDC 227
>gi|77550993|gb|ABA93790.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1370
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 23/110 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +D + K E S+ANL++ +
Sbjct: 277 SWTDFATSLKHKRQEFSITDLIGSLSVEEKARAKDNWGKKIEGGSSANLVQ--------K 328
Query: 156 NNPNDGHSNN---------------PKRLIANKKGNCFVCGKIIHYANQC 190
NP+ H+NN K+ KG CF+CGK H+A C
Sbjct: 329 KNPHASHNNNKKVKPDVKPKATTNFKKKGKGKTKGGCFMCGKSGHWAKDC 378
>gi|77553454|gb|ABA96250.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1287
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +DV K E +AN+++ +
Sbjct: 272 SWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGCSANMVQ--------K 323
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 324 KNPHASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAKDC 372
>gi|108708842|gb|ABF96637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1543
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +D K E S+AN+++ +
Sbjct: 657 SWSDFATSLKHKRQEFSVSDLIGSLGVEEKARAKDNRGKKVEGGSSANMLQ--------K 708
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 709 KNPHASHNNKKVKADVKPKATTNFKKKGKGKAKGDCFVCGKSGHWAKDC 757
>gi|37718821|gb|AAR01692.1| putative gag and pol polyprotein [Oryza sativa Japonica Group]
Length = 1427
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +D K E S+AN+++ +
Sbjct: 634 SWSDFATSLKHKRQEFSVSDLIGSLGVEEKARAKDNRGKKVEGGSSANMLQ--------K 685
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 686 KNPHASHNNKKVKADVKPKATTNFKKKGKGKAKGDCFVCGKSGHWAKDC 734
>gi|31126695|gb|AAP44618.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1494
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +D K E S+AN+++ +
Sbjct: 634 SWSDFATSLKHKRQEFSVSDLIGSLGVEEKARAKDNRGKKVEGGSSANMLQ--------K 685
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 686 KNPHASHNNKKVKADVKPKATTNFKKKGKGKAKGDCFVCGKSGHWAKDC 734
>gi|22267593|gb|AAM94928.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 619
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 22/112 (19%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KH +++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 127 SWSDFATSLKHNRQEFSVPDLIGSLGVEEKARAKDVQGKKVEGGSSANMVQ--------K 178
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQCRHK 193
NP+ H+N + K +CFVCGK H+A C +
Sbjct: 179 KNPHASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAKDCPER 230
>gi|22324949|gb|AAM95676.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1138
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KH +++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 127 SWSDFATSLKHNRQEFSVPDLIGSLGVEEKARAKDVQGKKVEGGSSANMVQ--------K 178
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 179 KNPHASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAKDC 227
>gi|110289378|gb|ABB47865.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1126
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KH +++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 127 SWSDFATSLKHNRQEFSVPDLIGSLGVEEKARAKDVQGKKVEGGSSANMVQ--------K 178
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 179 KNPHASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAKDC 227
>gi|51854274|gb|AAU10655.1| polyprotein [Oryza sativa Japonica Group]
Length = 1286
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 23/110 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +D K E S+ANL++ +
Sbjct: 270 SWTDFATSLKHKRQEFSVTDLIGSLSVEEKARAQDNRGKKIEGGSSANLVQ--------K 321
Query: 156 NNPNDGHSNN---------------PKRLIANKKGNCFVCGKIIHYANQC 190
NP+ H+NN K+ KG+CFVCGK H+A C
Sbjct: 322 KNPHASHNNNKKVKPDVKPKATTNFKKKGKGKAKGDCFVCGKPGHWAKDC 371
>gi|77551574|gb|ABA94371.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1239
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +D + K E S+AN+++ +
Sbjct: 242 SWSDFATSLKHKRQEFSVSDLIGSLGVEEKARAKDNWGKKVEGGSSANMVQKKNRHASHN 301
Query: 156 NNPNDGH-------SNNPKRLIANKKGNCFVCGKIIHYANQC 190
NN +N K+ KG+CFVCGK H+A C
Sbjct: 302 NNKKVKPDVKPKVATNFKKKGKGKAKGDCFVCGKSGHWAKDC 343
>gi|147773790|emb|CAN69713.1| hypothetical protein VITISV_011261 [Vitis vinifera]
Length = 382
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ KHK+K++ L+D I ++ EE N + + S ANL+E P+ NK +
Sbjct: 176 SWKDFKNYLKHKRKEMGLEDLIXXLKXEEDNCVSEKKVGKHPMESKANLVE--PKANKKR 233
Query: 156 NNPNDGHS---NNPKRLIANKKGNCFVCGKIIHYANQCRHKAQ 195
+ + S N K+ + G C++C K H A CR K Q
Sbjct: 234 KHFGESLSQGKNKYKKFL----GKCYICNKQGHRAKXCRLKGQ 272
>gi|116317837|emb|CAH65871.1| OSIGBa0103I21.4 [Oryza sativa Indica Group]
Length = 964
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 24/111 (21%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +D K E S+ANL++ +
Sbjct: 127 SWSDFATSLKHKRQEFSVTDLIGSLGVEEKARAKDNRGKNIEGGSSANLVQ--------K 178
Query: 156 NNPNDGHSNN----------------PKRLIANKKGNCFVCGKIIHYANQC 190
NP+ H+NN K+ KG+CFVCGK H+A C
Sbjct: 179 KNPHASHNNNKKKVKPDVKPKATTNFKKKGKGKAKGDCFVCGKPGHWAKNC 229
>gi|77554789|gb|ABA97585.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 401
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 23/113 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK++ S+ D I + IEEK + +D K E +ANL++ +
Sbjct: 277 SWSDFATSVKHKRQAFSVTDLIGSLGIEEKARAKDNRGKNIEEGFSANLVQ--------K 328
Query: 156 NNPNDGHSNNPK---------------RLIANKKGNCFVCGKIIHYANQCRHK 193
NP+ H+NN K + KG+CFVCGK H+A C +
Sbjct: 329 KNPHASHNNNQKVKPDVKPKATTNFKKKGKGKAKGDCFVCGKPGHWAKDCPER 381
>gi|116309085|emb|CAH66193.1| OSIGBa0144J05.5 [Oryza sativa Indica Group]
gi|116309103|emb|CAH66209.1| OSIGBa0096F13.4 [Oryza sativa Indica Group]
Length = 1147
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 311 SWSDFATSLKHKRQEFSVSDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQ--------K 362
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFV GK H+A C
Sbjct: 363 KNPHASHNNKKVKSDVKPKAATNFKKKGKGKAKGDCFVYGKYGHWAKDC 411
>gi|77554242|gb|ABA97038.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 312
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +D K E S+AN+++ +
Sbjct: 127 SWSDFATSLKHKRQEFSVSDLIGSLGVEEKARAKDNRGKKVEGGSSANMVQ--------K 178
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 179 KNPHASHNNKKVKPDVKPKATTNFKKKGKGKAKGDCFVCGKSGHWAKDC 227
>gi|21742763|emb|CAD40519.1| OSJNBa0023J03.5 [Oryza sativa Japonica Group]
Length = 1108
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN+++ +
Sbjct: 311 SWSDFATSLKHKRQEFSVSDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQ--------K 362
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFV GK H+A C
Sbjct: 363 KNPHASHNNKKVKSDVKPKAATNFKKKGKGKAKGDCFVYGKYGHWAKDC 411
>gi|77552577|gb|ABA95374.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1314
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +E+K + +DV K E S+AN+++ +
Sbjct: 299 SWSDFATSLKHKRQEFSVPDLIGSLGVEKKARAKDVQGKKVEGGSSANMVQ--------K 350
Query: 156 NNPNDGH--------------SNNPKRLIANKKGNCFVCGKIIHYANQC 190
NP+ H +N K+ KG+CFVCGK H+A C
Sbjct: 351 KNPHASHNNKKVKPDVKPKTATNFKKKGKGKAKGDCFVCGKSGHWAKDC 399
>gi|20502803|gb|AAM22635.1|AF434192_2 Gag and Pol [Zea mays]
Length = 1264
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 11/105 (10%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
+W ++ KHK++++S+++ I + +EEK + +D K E S+AN+++ NK +
Sbjct: 126 TWRNFATALKHKRQEISVENLIASLDVEEKARAKDTGSKGGEGHSSANMVQKNH--NKGK 183
Query: 156 NNPNDGHSNNPKRLIANKKG------NCFVCGKIIHYANQCRHKA 194
P SN P + KK CF CG+ H+A C +A
Sbjct: 184 GKPK---SNKPNKTTNFKKKKNKAELTCFACGEAGHFAKDCPDRA 225
>gi|38346946|emb|CAE04807.2| OSJNBb0022P19.2 [Oryza sativa Japonica Group]
Length = 1099
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 26/113 (23%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN ++ +
Sbjct: 226 SWSDFATSLKHKRQEFSVSDLIGSLGVEEKARAKDVRGKKVEGGSSANKVQ--------K 277
Query: 156 NNPNDGHSNNPKR------------------LIANKKGNCFVCGKIIHYANQC 190
NP+ H+N + KG+CFVCGK H+A C
Sbjct: 278 KNPHASHNNKKVKPDVKPDVKPNAATNFKKKGKGKAKGDCFVCGKSGHWAKDC 330
>gi|77554076|gb|ABA96872.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 732
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 23/114 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+ + S+ D I + +EEK + +D K E S+AN+++ +
Sbjct: 127 SWSDFATSLKHKQ-EFSVSDLIGSLGVEEKARAKDNRGKKVEGGSSANMVQ--------K 177
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQCRHKAQ 195
NP+ H+N +L K +CFVCGK H+A C + +
Sbjct: 178 KNPHASHNNKKVKLDGKPKATTNFKKKGKGKAKEDCFVCGKSGHWAKDCPERKE 231
>gi|218196344|gb|EEC78771.1| hypothetical protein OsI_19003 [Oryza sativa Indica Group]
Length = 422
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + K+K+++ S+ D I + +EEK + +D K E S+AN+++ +
Sbjct: 29 SWSDFATSLKYKRQEFSVSDLIGSLGVEEKARAKDNRGKKVEGGSSANMVQ--------K 80
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+AN C
Sbjct: 81 KNPHASHNNKKVKPDVKPKATTNFKKKGKGKAKGDCFVCGKSGHWANDC 129
>gi|147815925|emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]
Length = 1544
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ KHK K++ L+D I+ ++IEE N + + S ANL+E P+ NK +
Sbjct: 140 SWKDFKNYLKHKHKEMGLEDLIVRLKIEEDNHVFEKKVGKHPMESKANLVE--PKANKKR 197
Query: 156 NNPNDGHSN--NPKRLIANKKGNCFVCGKII--HYANQCRHKAQ 195
+ +G S N + A K C++C K + H A C K Q
Sbjct: 198 KHFGEGPSQGKNKYKKFARK---CYICNKQVQGHSAKDCHLKEQ 238
>gi|218194360|gb|EEC76787.1| hypothetical protein OsI_14890 [Oryza sativa Indica Group]
Length = 330
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 26/113 (23%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN ++ +
Sbjct: 52 SWSDFATSLKHKRQEFSVSDLIGSLGVEEKARAKDVRGKKVEGGSSANKVQ--------K 103
Query: 156 NNPNDGHSNNPKR------------------LIANKKGNCFVCGKIIHYANQC 190
NP+ H+N + KG+CFVCGK H+A C
Sbjct: 104 KNPHASHNNKKVKPDVKPDVKPNAATNFKKKGKGKAKGDCFVCGKSGHWAKDC 156
>gi|110289417|gb|ABG66192.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1457
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D + KHK+++ S+ D I + +EEK + + V K E S+AN+++ +
Sbjct: 316 SWSDLATSLKHKRQEFSVPDLIGSLGVEEKARAKYVRGKKVEGGSSANMVQ--------K 367
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 368 KNPHASHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDC 416
>gi|13786449|gb|AAK39574.1|AC025296_9 putative retrotransposon polyprotein [Oryza sativa Japonica Group]
Length = 208
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D + KHK+++ S+ D I + +EEK + + V K E S+AN+++ +
Sbjct: 80 SWSDLATSLKHKRQEFSVPDLIGSLGVEEKARAKYVRGKKVEGGSSANMVQ--------K 131
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CFVCGK H+A C
Sbjct: 132 KNPHASHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDC 180
>gi|38344080|emb|CAE01740.2| OSJNBb0056F09.3 [Oryza sativa Japonica Group]
Length = 366
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 23/105 (21%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + D K E S+ANL++ +
Sbjct: 270 SWSDFATSLKHKRQEFSITDLIGSLGVEEKARANDNRGKKIEGGSSANLVQ--------K 321
Query: 156 NNPNDGHSNNPK-RLIANKKG--------------NCFVCGKIIH 185
NP+ H+NN K +L K +CFVCGK H
Sbjct: 322 KNPHTSHNNNKKVKLDVKPKATTNFKKKGKGKAKGDCFVCGKPGH 366
>gi|147825337|emb|CAN73255.1| hypothetical protein VITISV_006031 [Vitis vinifera]
Length = 295
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 111 VSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQNNPNDGHSNNPK 167
+SL+D IIHIRIEE+N+ RD +KAKE S AN++E +L +NN N K
Sbjct: 1 MSLEDVIIHIRIEEQNRNRDNIEKAKELSSKANVVEEKSKL---KNNRKRXEKTNSK 54
>gi|62734435|gb|AAX96544.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
gi|77550433|gb|ABA93230.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1321
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 22/107 (20%)
Query: 98 GDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQNN 157
G I KHK+++ S+ D I + +EEK + +DV K E S+AN+++ + N
Sbjct: 304 GGIIAKLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQ--------KKN 355
Query: 158 PNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
P+ H+N + K +CFVCGK H+A C
Sbjct: 356 PHASHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDC 402
>gi|77556338|gb|ABA99134.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1083
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 25/112 (22%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +D K E S+ NL++ Q
Sbjct: 113 SWLDFATSLKHKRQEFSVTDLIGSLGVEEKARAKDNRGKNIEGGSSTNLVQ--------Q 164
Query: 156 NNPNDGH-----------------SNNPKRLIANKKGNCFVCGKIIHYANQC 190
NP+ H +N K+ KG+CFVCGK H+A C
Sbjct: 165 KNPHASHNNNNNKKVKPDVKPKATTNFKKKGKGKAKGDCFVCGKPGHWAKNC 216
>gi|108862766|gb|ABA98797.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1243
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIE----NTPQL 151
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ + +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKEK 216
Query: 152 NKTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C H+
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPHR 258
>gi|222641374|gb|EEE69506.1| hypothetical protein OsJ_28953 [Oryza sativa Japonica Group]
Length = 214
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 97 WGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQL--NKT 154
W D+ KHK+++ S+ D I + +EEK + +D K E S+A +++ P N
Sbjct: 80 WSDFATFLKHKRQEFSVSDLIGFLGVEEKARAKDNRGKKVEGGSSAIMVQKNPHASHNNK 139
Query: 155 QNNPN---DGHSNNPKRLIANKKGNCFVCGKIIHYANQC 190
+ P+ +N K+ KG+CFVCGK H+A C
Sbjct: 140 KVMPDVKPKATTNFKKKGKGKAKGDCFVCGKSRHWAKYC 178
>gi|295799979|emb|CAX68207.1| Copia-like retrotransposon [Helianthus annuus]
Length = 1358
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 22/113 (19%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
W D+ K HK + SL + + H+RIEE+ + RD + K S ++ + Q K
Sbjct: 169 GWKDFSKRMMHKSEDYSLDELLKHLRIEEETRNRD--KRGKVGSSVNHVAGGSGQKGKGA 226
Query: 156 NNPN-------------DGHSNN--PKRLIANKKGNCFVCGKIIHYANQCRHK 193
++ N H+NN PKR G C VCG+ HYA +C +
Sbjct: 227 SSRNKKFTAPKKKEFKKSQHTNNHQPKR-----SGKCHVCGETGHYARECSQR 274
>gi|77552810|gb|ABA95606.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 999
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +D K E S+ANL++ +
Sbjct: 185 SWTDFATSLKHKRQEFSVTDLIGSLGVEEKARAKDNRGKKIEGGSSANLVQ--------K 236
Query: 156 NNPNDGHSNN---------------PKRLIANKKGNCFVCGKIIHYANQC 190
NP+ H+NN K+ KG CFV GK H+A C
Sbjct: 237 KNPHASHNNNKKVKPDVKPKATTNFKKKGKGKAKGGCFVYGKSGHWAKDC 286
>gi|62733183|gb|AAX95300.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108864241|gb|ABA92639.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 789
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 22/111 (19%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D + + +EEK + +D + K E S ANL++ +
Sbjct: 83 SWSDFATSLKHKRQEFSVTDLVSSLGVEEKARAKDNWGKNIEGGSTANLVQ--------K 134
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQCRH 192
NP+ H+N + K +CFVCG H Q +
Sbjct: 135 KNPHASHNNKKVKSDVKPKATTNFKKKGKGKAKGDCFVCGSKCHTCVQSKQ 185
>gi|222630420|gb|EEE62552.1| hypothetical protein OsJ_17351 [Oryza sativa Japonica Group]
Length = 251
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + IEEK + +D K +S+AN++ +
Sbjct: 80 SWRSFGTALKHKRQEYSIEGLIASLDIEEKAREKDAASKGDGGQSSANVVHKAHNKSKGK 139
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N +G CFVCG+ H A +C +
Sbjct: 140 YKAQQTTNFKKQKKNNNNPNQDEGTCFVCGQPGHLARKCLQR 181
>gi|77553063|gb|ABA95859.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 503
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 19/102 (18%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+++ S+ D I + +EEK + +D++ K K+ + +
Sbjct: 199 SWSDFATSLKHKRQEFSVIDLIGSLGVEEKARAKDIWGKKKK------------NPHASH 246
Query: 156 NNPNDGHSNNPKRLI-------ANKKGNCFVCGKIIHYANQC 190
NN H PK KG+CFVCGK H+A C
Sbjct: 247 NNKKVKHDVKPKATTNFKKKGKGKAKGDCFVCGKPGHWAKDC 288
>gi|108708056|gb|ABF95851.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1075
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 11/107 (10%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ KH+ +++++ D + + +EEK + +D ++ S NL + + NK
Sbjct: 192 SWRDFATALKHRMEEMTMDDLVASLDVEEKARAKDAPLVNEDDNSRVNLTDTHQRRNK-- 249
Query: 156 NNPNDGHSNNPKR---------LIANKKGNCFVCGKIIHYANQCRHK 193
NP + +S R +CF CGK H+A CR+K
Sbjct: 250 KNPKENNSGMKPRGKIDKGNGKKNGKGPMSCFECGKPGHFARNCRYK 296
>gi|52353525|gb|AAU44091.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1117
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 24/110 (21%)
Query: 97 WGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQN 156
W D+ + KHK+++ S+ + I + +EEK + +D K E S+ NL++ +
Sbjct: 216 WSDFATSLKHKRQEFSVTNLIGSLGVEEKARAKDNRGKNIEGGSSTNLVQ--------KK 267
Query: 157 NPNDGHSNN----------------PKRLIANKKGNCFVCGKIIHYANQC 190
NP+ H+NN K+ KG+CFVCGK H+A C
Sbjct: 268 NPHASHNNNNKKVKPDVKPKATTNFKKKGKGKAKGDCFVCGKPGHWAKNC 317
>gi|55168300|gb|AAV44166.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1342
Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 106 HKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQNN-------P 158
HK+++ S+ D I + +EEK + +DV K E S+AN+++ P + + NN
Sbjct: 267 HKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQKNP--HASHNNKKVKPDVK 324
Query: 159 NDGHSNNPKRLIANKKGNCFVCGKIIHYANQC 190
+N K+ KG+CFVCGK H+A C
Sbjct: 325 PKAATNFKKKGKGKAKGDCFVCGKSGHWAKDC 356
>gi|62734114|gb|AAX96223.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
gi|77549882|gb|ABA92679.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1302
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +DV K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDVASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|77553983|gb|ABA96779.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1468
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ NK++
Sbjct: 244 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQ--NKSK 301
Query: 156 NNPNDGHSNNPKRLIANK------KGNCFVCGKIIHYANQC 190
+ N K+ N + CFVCG++ H A +C
Sbjct: 302 GKYKAQQTTNFKKQKKNNINPNQDERTCFVCGQVGHLARKC 342
>gi|77551155|gb|ABA93952.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1336
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ NK++
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQ--NKSK 214
Query: 156 NNPNDGHSNNPKRLIANK------KGNCFVCGKIIHYANQC 190
+ N K+ N + CFVCG++ H A +C
Sbjct: 215 GKYKAQQTTNFKKQKKNNINPNQDERTCFVCGQVGHLARKC 255
>gi|57900690|gb|AAW57815.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1109
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + IEEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSIEGLIASLDIEEKAREKDAASKGDGGQSSANVVHKAHNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N +G CFVCG+ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDEGTCFVCGQPGHLARKCLQR 258
>gi|108710065|gb|ABF97860.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
[Oryza sativa Japonica Group]
Length = 661
Score = 45.8 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 527 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 586
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 587 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 628
>gi|47900532|gb|AAT39267.1| putative polyprotein [Oryza sativa Japonica Group]
gi|50878407|gb|AAT85181.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1297
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIE----NTPQL 151
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ + +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKEK 216
Query: 152 NKTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQC-RHKAQ 195
K Q N + CFVCG++ H A +C +HK
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQHKGM 261
>gi|110289248|gb|ABB47787.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1288
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 22/101 (21%)
Query: 104 SKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQNNPNDGHS 163
S HK+++ S+ D I + +EEK + +DV K E S+AN+++ + NP+ H+
Sbjct: 247 SVHKRQEFSVSDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQ--------RKNPHASHN 298
Query: 164 NNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
N + K +CFVCGK H+A C
Sbjct: 299 NKKVKPDVKPKAATNCKKKGKGKAKGDCFVCGKSGHWAKDC 339
>gi|16905175|gb|AAL31045.1|AC078893_8 putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 22/101 (21%)
Query: 104 SKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQNNPNDGHS 163
S HK+++ S+ D I + +EEK + +DV K E S+AN+++ + NP+ H+
Sbjct: 247 SVHKRQEFSVSDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQ--------RKNPHASHN 298
Query: 164 NNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
N + K +CFVCGK H+A C
Sbjct: 299 NKKVKPDVKPKAATNCKKKGKGKAKGDCFVCGKSGHWAKDC 339
>gi|31432272|gb|AAP53927.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1297
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQC-RHKAQ 195
K Q N + CFVCG++ H A +C +HK
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQHKGM 261
>gi|32489125|emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]
Length = 1320
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG+I H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQIGHLARKCPQR 258
>gi|21671931|gb|AAM74293.1|AC083944_11 Putative transposable element [Oryza sativa Japonica Group]
Length = 1169
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 24/111 (21%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAK-EFRSNANLIENTPQLNKT 154
SW D+ + KHK+++ S+ D I + +EEK + +D K K + S+ANL++
Sbjct: 247 SWSDFATSLKHKRQEFSVTDLIGSLGVEEKARAKDNRGKKKNDGGSSANLVQ-------- 298
Query: 155 QNNPNDGH---------------SNNPKRLIANKKGNCFVCGKIIHYANQC 190
+ NP+ H +N K+ K + FVCGK H+A C
Sbjct: 299 KKNPHASHNNKKKVKPDVKPKATTNFKKKGQGKAKVDFFVCGKPGHWAKDC 349
>gi|110288696|gb|ABB46939.2| retrotransposon protein, putative, Ty1-copia subclass, expressed
[Oryza sativa Japonica Group]
Length = 1085
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 24/111 (21%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAK-EFRSNANLIENTPQLNKT 154
SW D+ + KHK+++ S+ D I + +EEK + +D K K + S+ANL++
Sbjct: 176 SWSDFATSLKHKRQEFSVTDLIGSLGVEEKARAKDNRGKKKNDGGSSANLVQ-------- 227
Query: 155 QNNPNDGHSNN---------------PKRLIANKKGNCFVCGKIIHYANQC 190
+ NP+ H+N K+ K + FVCGK H+A C
Sbjct: 228 KKNPHASHNNKKKVKPDVKPKATTNFKKKGQGKAKVDFFVCGKPGHWAKDC 278
>gi|147800584|emb|CAN72993.1| hypothetical protein VITISV_002698 [Vitis vinifera]
Length = 1209
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 138 FRSNANLIENTPQLNKTQNNPNDGHSNNPKR---LIANKKGNCFVCGKIIHYANQCRHK 193
+++NA N P+ B N G+ +PK+ KKG CFVCGK HYA +CR++
Sbjct: 117 WKANAVSKANHPRGKNNNBKRNSGNYMSPKKNXEQFKGKKGXCFVCGKPGHYARECRYR 175
>gi|108711148|gb|ABF98943.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
Length = 1460
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|41393211|gb|AAS01934.1| putative Integrase core domain containing protein [Oryza sativa
Japonica Group]
Length = 1180
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 117 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 176
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q+ N + CFVCG++ H A +C +
Sbjct: 177 YKAQHTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 218
>gi|32489064|emb|CAE03994.1| OSJNBb0089B03.8 [Oryza sativa Japonica Group]
Length = 1113
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 126 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 185
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 186 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 227
>gi|108709158|gb|ABF96953.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1197
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 128 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 187
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q+ N + CFVCG++ H A +C +
Sbjct: 188 YKAQHTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 229
>gi|108862657|gb|ABA98136.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1249
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|57863895|gb|AAG03096.2|AC073405_12 putative polyprotein [Oryza sativa Japonica Group]
gi|57863849|gb|AAW56890.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1274
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLNVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|54287603|gb|AAV31347.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1059
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 280 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 339
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQC 190
K Q N + CFVCG++ H A +C
Sbjct: 340 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKC 378
>gi|15144313|gb|AAK84454.1|AC087192_15 putative polyprotein [Oryza sativa Japonica Group]
Length = 1308
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|55733934|gb|AAV59441.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1225
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|14626276|gb|AAK71544.1|AC087852_4 putative polyprotein [Oryza sativa Japonica Group]
Length = 1308
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|32488578|emb|CAE03086.1| OSJNBa0017B10.1 [Oryza sativa Japonica Group]
gi|38345937|emb|CAD41412.2| OSJNBb0078D11.12 [Oryza sativa Japonica Group]
Length = 1320
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|50511444|gb|AAT77367.1| putative polyprotein [Oryza sativa Japonica Group]
gi|51854387|gb|AAU10767.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 1320
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|13937286|gb|AAK50117.1|AC087797_2 putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1198
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|77555142|gb|ABA97938.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1320
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|77548605|gb|ABA91402.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 2027
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 352 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 411
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 412 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 453
>gi|108710670|gb|ABF98465.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1210
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|108863988|gb|ABA91445.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1320
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSNGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|108862795|gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1287
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 118 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 177
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 178 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 219
>gi|51038138|gb|AAT93941.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1433
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|50080271|gb|AAT69606.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53749238|gb|AAU90098.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1320
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|32487304|emb|CAE05795.1| OSJNBb0046K02.5 [Oryza sativa Japonica Group]
Length = 1356
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K+ +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKSDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|77548453|gb|ABA91250.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1320
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|62734723|gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
Length = 1320
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|49328150|gb|AAT58846.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1229
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|30089754|gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
Length = 1302
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|24431600|gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza sativa Japonica
Group]
Length = 1911
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|38346634|emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa Japonica Group]
Length = 1319
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|39545722|emb|CAD40924.3| OSJNBa0033G16.12 [Oryza sativa Japonica Group]
Length = 1320
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N K + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNKNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|38344663|emb|CAE02325.2| OSJNBb0112E13.7 [Oryza sativa Japonica Group]
Length = 1342
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K+ +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKSDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|38346534|emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group]
Length = 1319
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|108711058|gb|ABF98853.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1320
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|110289385|gb|AAP54573.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1320
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|108862305|gb|ABA96095.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 585
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANIVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQC 190
K Q N + CFVCG++ H A +C
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKC 255
>gi|53981174|gb|AAV24814.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1289
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|37718811|gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japonica Group]
Length = 1302
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|77552972|gb|ABA95768.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1151
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 28 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 87
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 88 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 129
>gi|37718845|gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Japonica Group]
Length = 1302
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|62701755|gb|AAX92828.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
gi|62733724|gb|AAX95834.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
gi|77550359|gb|ABA93156.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1277
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N K + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNKNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|224110970|ref|XP_002315699.1| predicted protein [Populus trichocarpa]
gi|222864739|gb|EEF01870.1| predicted protein [Populus trichocarpa]
Length = 206
Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 17/102 (16%)
Query: 37 KNLPDASKIELFNGEKFKCWQEKVFHVLHVYNLADYLQSSLLEEGTEDYDKKLQTWNAES 96
K PD KIE+F G FK WQE++F VL +Y + L S T D NAE+
Sbjct: 88 KPFPDILKIEVFAGAHFKRWQERIFSVLDMYGVVWVLTDS----KTSD--------NAEA 135
Query: 97 WGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEF 138
W T +HKK + + + +E+ + V K F
Sbjct: 136 W-----THEHKKAKKICSNMVTKYIVEDMGNQKFVIGKEMIF 172
>gi|38347504|emb|CAE02415.2| OSJNBa0095E20.2 [Oryza sativa Japonica Group]
Length = 842
Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIE------NTP 149
SW D+ + KHK+++ S+ D I + +EEK+ +D K + S+ANL++ +
Sbjct: 127 SWTDFATSLKHKRQEFSVTDLIGSLGVEEKSGAKDNRAKKIKGGSSANLVQKKNLHASHN 186
Query: 150 QLNKTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQC 190
N +N K+ KG CFVCGK H+A C
Sbjct: 187 NKKVKPNVKPKATTNFKKKGKGKTKGGCFVCGKSGHWAKHC 227
>gi|147835919|emb|CAN63971.1| hypothetical protein VITISV_004149 [Vitis vinifera]
Length = 570
Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
Query: 111 VSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQNNPNDGHSNNPKRLI 170
+SL+D IIHIRIE++N+ RD +KAKE S AN +E + +K +NN + ++ K
Sbjct: 1 MSLEDLIIHIRIEKQNRNRDNVEKAKELSSKANALE---EKSKPKNNRSIKQNSRTKPNA 57
Query: 171 ANKKGN 176
+NK+G+
Sbjct: 58 SNKEGD 63
>gi|51038137|gb|AAT93940.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1861
Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 571 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 630
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 631 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 672
>gi|53980940|gb|AAU44026.2| putative polyprotein [Oryza sativa Japonica Group]
Length = 1391
Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 246 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 305
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 306 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 347
>gi|38344281|emb|CAE03764.2| OSJNBa0013K16.13 [Oryza sativa Japonica Group]
Length = 1264
Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|108708907|gb|ABF96702.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1518
Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 373 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 432
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 433 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 474
>gi|38345215|emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]
Length = 1302
Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|77555759|gb|ABA98555.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1361
Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 242 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 301
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 302 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 343
>gi|77557040|gb|ABA99836.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1302
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGAALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQC 190
K Q N + CFVCG++ H A +C
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKC 255
>gi|38344704|emb|CAE05246.2| OSJNBb0115I09.8 [Oryza sativa Japonica Group]
Length = 295
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 118 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAQEKDAASKGDGGQSSANVVHKAQNKSKGK 177
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQC 190
K Q N + CFVCG++ H A++C
Sbjct: 178 YKAQQTTNFKKQKKNNNNPNQDEWTCFVCGQLGHLASKC 216
>gi|32492223|emb|CAE03674.1| OSJNBa0042N22.18 [Oryza sativa Japonica Group]
gi|38567758|emb|CAE76045.1| B1248C03.4 [Oryza sativa Japonica Group]
Length = 853
Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + K K+++ S+ D I + +EEK + +D K E S+AN+++ +
Sbjct: 127 SWSDFATSLKRKRQEFSVSDLIGSLGVEEKARAKDNRGKKVEGGSSANMVQ--------K 178
Query: 156 NNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP+ H+N + K +CF+CGK ++A C
Sbjct: 179 KNPHASHNNKKVKPDVKPKATTNFKKKGKGKAKGDCFMCGKSGYWAKDC 227
>gi|147772151|emb|CAN66751.1| hypothetical protein VITISV_018060 [Vitis vinifera]
Length = 577
Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 113 LKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQNNPNDGHSNNPK 167
L+D IIHI+IE++N+ RD +KAKE S AN++E P K +NN N K
Sbjct: 3 LEDVIIHIKIEKQNQNRDKVEKAKELSSKANVVEEKP---KPENNRKRTKKXNSK 54
>gi|110288918|gb|ABG66024.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 846
Score = 44.3 bits (103), Expect = 0.024, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 22/109 (20%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW + + KHK+++ S+ D I + +EEK + +D K E S+AN+++ +
Sbjct: 145 SWSGFAISLKHKRQEFSVSDLIGSLGVEEKARAKDNRGKKVEGGSSANMVQ--------K 196
Query: 156 NNPNDGHSNNPKRLIANKKGNC--------------FVCGKIIHYANQC 190
NP+ H+N + K FVCGK H+A C
Sbjct: 197 KNPHASHNNKKVKPDVKPKATTNFKKKGKGKAKGDRFVCGKSGHWAKDC 245
>gi|62734000|gb|AAX96109.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
Length = 1350
Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQLGHLARKCPQR 258
>gi|48475093|gb|AAT44162.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1302
Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKDDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCSQR 258
>gi|147857286|emb|CAN83486.1| hypothetical protein VITISV_019986 [Vitis vinifera]
Length = 332
Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 40 PDASKIELFNGEKFKCWQEKVFHVLHVYNLADYLQSSLLEEGTEDY-DKKLQTWNAESWG 98
PD SKI+ FNG FK WQE+VF ++ V NL L E+G+ KK + E W
Sbjct: 10 PDTSKIDPFNGTFFKRWQERVFSIIDVVNLEHILTDPKSEDGSHLLPTKKTGKTSYELWK 69
Query: 99 DY 100
Y
Sbjct: 70 GY 71
>gi|62733257|gb|AAX95374.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|108864298|gb|ABA92908.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1393
Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQLGHLARKCPQR 258
>gi|255545774|ref|XP_002513947.1| conserved hypothetical protein [Ricinus communis]
gi|223547033|gb|EEF48530.1| conserved hypothetical protein [Ricinus communis]
Length = 169
Score = 43.9 bits (102), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 29 LASTSNTGKNLPDASKIELFNGEKFKCWQEKVFHVLHVYNLA 70
L + K PD SKI +F+GE FK WQE+VF +L ++ +A
Sbjct: 27 LMPAVSFAKPFPDISKILVFDGENFKRWQERVFSILDMHGVA 68
>gi|57834009|emb|CAI44606.1| P0650D04.10 [Oryza sativa Japonica Group]
Length = 1194
Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLI---ENTPQLN 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +N + N
Sbjct: 112 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKNRGN 171
Query: 153 KTQNNPNDGHSNNPKRLIANK-KGNCFVCGKIIHYANQCRHK 193
+ P S I N+ + CFVCG++ H A +C +
Sbjct: 172 TKLSRPPTSRSRRRTTTIPNQDERTCFVCGQVGHLARKCPQR 213
>gi|77551169|gb|ABA93966.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1212
Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +SNAN++ +
Sbjct: 157 SWRGFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSNANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG+ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQPGHLARKCPQR 258
>gi|110289158|gb|ABB47727.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 895
Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + T KHK+++ S++ I +EEK + +D K +S+ N++ +
Sbjct: 157 SWRSFGTTLKHKRQEYSVEGLIASFDVEEKAREKDAASKGDGGQSSTNVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQC 190
K Q N + CFVCG++ H A +C
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQLGHLARKC 255
>gi|38347007|emb|CAE02261.2| OSJNBb0058J09.8 [Oryza sativa Japonica Group]
Length = 1282
Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERICFVCGQVGHLARKCPQR 258
>gi|77550728|gb|ABA93525.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1235
Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S++N++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSSNVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|307135946|gb|ADN33807.1| ty1-copia retrotransposon protein [Cucumis melo subsp. melo]
Length = 1038
Score = 43.5 bits (101), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 10/107 (9%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW DY KHKKK + L + I H+R EE N+++D NANL+E++ +N+ +
Sbjct: 193 SWNDYRNHLKHKKKDLKLHELISHMRTEEANRLKDKLASQNLNSVNANLVESS-FVNRDR 251
Query: 156 NNPNDGH--SNNPKR-------LIANKKGNCFVCGKIIHYANQCRHK 193
GH N+ KR I KK C+VC K H + QC +
Sbjct: 252 TKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCRKEGHKSYQCNQR 298
>gi|53749480|gb|AAU90333.1| Putative gag and pol polyprotein, identical [Solanum demissum]
Length = 853
Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 19/110 (17%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW ++ KT HK+K+ S++ I+ I +EE+ + +D + +E +N+ + +
Sbjct: 28 SWKEFQKTMCHKQKETSVETFIMKIHMEEEARGQDALLQIEE----SNITTKPKKKKFKK 83
Query: 156 NNPNDGHSNNPKRLIANK----------KGNCFVCGKIIHYANQCRHKAQ 195
NN PK+ KG CFVCGK H A CR + +
Sbjct: 84 NN-----GRPPKKNNGENNQAQNQQVQDKGPCFVCGKSGHIARFCRFRKR 128
>gi|383865821|ref|XP_003708371.1| PREDICTED: uncharacterized protein K02A2.6-like [Megachile
rotundata]
Length = 1345
Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 110 QVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQNNPNDGHSNNPKRL 169
++S KDA I +K I + K ++ R++A N N T +N N + N+
Sbjct: 182 ELSAKDAA---EIHQKPTISAINSKIQKNRNSAKNTNNNISKNYTNSNTNPRNRNSIPNA 238
Query: 170 IANKKGNCFVCGKIIHYANQC 190
I NK G C+ CG HYAN+C
Sbjct: 239 IVNKTGYCYRCGSTKHYANKC 259
>gi|108707134|gb|ABF94929.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1284
Score = 43.1 bits (100), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 142 SWRSFGTVLKHKRQEYSVEGLIAPLDVEEKAREKDAASKGDGGQSSANVMHKAQNKSKGK 201
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQC 190
K Q N + CFVCG++ H A +C
Sbjct: 202 YKAQQTTNLKKQKKNNNNPNQDERTCFVCGQLGHLARKC 240
>gi|62733619|gb|AAX95736.1| Reverse transcriptase (RNA-dependent DNA polymerase), putative
[Oryza sativa Japonica Group]
gi|110288782|gb|AAP52615.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 892
Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 22/108 (20%)
Query: 97 WGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQN 156
W D++ + KHK+++ S+ D I + +EE + +D K E S+AN+++ +
Sbjct: 79 WSDFVTSLKHKRQEFSVSDLIGSLGVEENARAKDNLGKKVERGSSANMVQ--------KK 130
Query: 157 NPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYANQC 190
NP H+N + K +CFV K H+A C
Sbjct: 131 NPQASHNNKKVKPDVKPKATTNFKKKGKGKAKGDCFVSRKSGHWAKDC 178
>gi|49328112|gb|AAT58810.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1320
Score = 42.7 bits (99), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAWEKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|47777367|gb|AAT38001.1| Putative polyprotein [Oryza sativa Japonica Group]
Length = 1297
Score = 42.7 bits (99), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAWEKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 258
>gi|29788833|gb|AAP03379.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|50881449|gb|AAT85294.1| Gag and Pol protein, putative [Oryza sativa Japonica Group]
gi|108710326|gb|ABF98121.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
[Oryza sativa Japonica Group]
Length = 216
Score = 42.7 bits (99), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIE 146
SW D+ + KHK+++ S+ D I + IEEK + +D + K E S+ANL++
Sbjct: 147 SWSDFATSLKHKRQEFSVTDLIGSLGIEEKARAKDNWGKKIEGGSSANLVQ 197
>gi|77550940|gb|ABA93737.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1579
Score = 42.7 bits (99), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + K+K+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 457 SWRSFGTAFKYKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 516
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQC 190
K Q N + CFVCG++ H A +C
Sbjct: 517 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVRHLARKC 555
>gi|147802407|emb|CAN63713.1| hypothetical protein VITISV_008235 [Vitis vinifera]
Length = 387
Score = 42.4 bits (98), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 139 RSNANLIENTPQLNKTQNNPNDGHSNNPKR---LIANKKGNCFVCGKIIHYANQCRHK 193
++NA N P+ + N G+ +PK+ KKG CFVCGK HYA +CR++
Sbjct: 204 KANAVSKANHPKGKNNNDKRNSGNYMSPKKNQEQFKGKKGPCFVCGKPEHYARECRYR 261
>gi|38344873|emb|CAE01299.2| OSJNBa0020P07.16 [Oryza sativa Japonica Group]
Length = 1314
Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 59/138 (42%), Gaps = 16/138 (11%)
Query: 60 VFHVLHVYNLADYLQSSLLEEGTEDYDKKLQTWNAESWGDYIKTSKHKKKQVSLKDAIIH 119
+ H Y +AD S++E+ E ++ ++ KHK+++ S++ I
Sbjct: 105 IMEQFHDYKMAD--NRSVVEQAHE----------IQTMANFGTALKHKRQEYSVEGLIAS 152
Query: 120 IRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN----KTQNNPNDGHSNNPKRLIANKKG 175
+ +EEK + +D K +S+AN++ + K Q N +
Sbjct: 153 LDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQDER 212
Query: 176 NCFVCGKIIHYANQCRHK 193
CFVCG++ H A +C +
Sbjct: 213 TCFVCGQVGHLARKCPQR 230
>gi|77551394|gb|ABA94191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1060
Score = 42.4 bits (98), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 124 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 183
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H +C +
Sbjct: 184 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLDRKCPQR 225
>gi|77555429|gb|ABA98225.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1199
Score = 42.4 bits (98), Expect = 0.099, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLI 145
SW D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN++
Sbjct: 268 SWSDFATSLKHKRQEFSVSDLIGSLGVEEKARAKDVRAKKVEGGSSANMV 317
>gi|16924041|gb|AAL31653.1|AC079179_8 Putative polyprotein from transposon TNT [Oryza sativa]
gi|31429907|gb|AAP51896.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1342
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQL 151
SW D+ + KHK+++ S+ D I + +EEK + +DV K E S+AN++ L
Sbjct: 312 SWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVGRGSSL 367
>gi|255557413|ref|XP_002519737.1| conserved hypothetical protein [Ricinus communis]
gi|223541154|gb|EEF42710.1| conserved hypothetical protein [Ricinus communis]
Length = 88
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 26 YDLLASTSNTGKNLPDASKIELFNGEKFKCWQEKVFHVLHVYNLA 70
Y L S + K PD SKI++F+ E F+ WQE+VF +L + +A
Sbjct: 26 YVPLLSVVSFTKPFPDISKIQVFDEENFRRWQERVFSILDMDGVA 70
>gi|224123094|ref|XP_002330337.1| predicted protein [Populus trichocarpa]
gi|222871541|gb|EEF08672.1| predicted protein [Populus trichocarpa]
Length = 107
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 12/78 (15%)
Query: 36 GKNLPDASKIELFNGEKFKCWQEKVFHVLHVYNLADYLQSSLLEEGTEDYDKKLQTWNAE 95
K PD SKIE+F GE F+ WQE+ VL +Y + L++ T D NAE
Sbjct: 37 AKPFPDISKIEVFVGENFRRWQERNIDVLDMYRVV----WVLIDIKTND--------NAE 84
Query: 96 SWGDYIKTSKHKKKQVSL 113
+W K + +SL
Sbjct: 85 AWTHVNKMRLNPLVVISL 102
>gi|255557560|ref|XP_002519810.1| conserved hypothetical protein [Ricinus communis]
gi|223541049|gb|EEF42606.1| conserved hypothetical protein [Ricinus communis]
Length = 107
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 29 LASTSNTGKNLPDASKIELFNGEKFKCWQEKVFHVLHVYNLADYLQSSLLEEGTEDYDKK 88
L S+ K D +KI++F G+ +K WQE+VF +L ++ +A ++ L+ + K+
Sbjct: 35 LMSSRLYAKPFSDIAKIKVFGGQSYKRWQERVFSILDMHGIASAIRDPKLDPNVD--PKQ 92
Query: 89 LQTW 92
++ W
Sbjct: 93 MELW 96
>gi|77556955|gb|ABA99751.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1805
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 642 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 701
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQC 190
K Q N + CFVC ++ H A +C
Sbjct: 702 YKAQQTTNFKKQKKNNNNPNQDERTCFVCSQVGHLARKC 740
>gi|147779979|emb|CAN77804.1| hypothetical protein VITISV_003036 [Vitis vinifera]
Length = 220
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ KHK+K++ LKD I+ ++IE+ N+ + S ANL+E P+ NK +
Sbjct: 140 SWKDFKNYLKHKRKEMGLKDLIVRLKIEKDNRFFENKVGKHPMESKANLVE--PKANKKR 197
Query: 156 NNPNDGHSNN 165
+ +G S
Sbjct: 198 KHFGEGLSQG 207
>gi|108709742|gb|ABF97537.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1397
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + K K+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 234 SWRSFGTALKRKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 293
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 294 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 335
>gi|40538957|gb|AAR87214.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
Length = 1393
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + K K+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 234 SWRSFGTALKRKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 293
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG++ H A +C +
Sbjct: 294 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQR 335
>gi|147819561|emb|CAN76565.1| hypothetical protein VITISV_010942 [Vitis vinifera]
Length = 839
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 111 VSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQNNPNDGHSN--NPKR 168
+ L+D I+ ++IEE N++ S ANL+E P+ NK + + +G S N +
Sbjct: 1 MGLEDLIVRLKIEEDNRVSVKKVGKHPMESKANLVE--PKANKKRKHFGEGPSQRKNKYK 58
Query: 169 LIANKKGNCFVCGKIIHYANQCRHKAQ 195
A K C++C K H A CR K Q
Sbjct: 59 KFAMK---CYICNKQSHRAKDCRLKGQ 82
>gi|108862623|gb|ABA98024.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 727
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + IEEK + +D K +S+AN++ +
Sbjct: 28 SWRSFGTALKHKRQEYSVEGLITSLDIEEKAREKDAASKGDGGQSSANIVHKAQNKSKGK 87
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQ 189
K Q N + CFVCG++ H A +
Sbjct: 88 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQLGHLARK 125
>gi|147805294|emb|CAN78262.1| hypothetical protein VITISV_006704 [Vitis vinifera]
Length = 565
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 40 PDASKIELFNGEKFKCWQEKVFHVLHVYNLADYLQSSLLEEGTEDYDKKLQTW 92
PD SKI+ FNG FK WQE+VF + V NL L ++G+ L TW
Sbjct: 10 PDTSKIDPFNGTFFKRWQERVFSAIDVVNLEHILTDPKPKDGSH----LLPTW 58
>gi|147865803|emb|CAN81142.1| hypothetical protein VITISV_018481 [Vitis vinifera]
Length = 622
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 114 KDAIIHIRIEEKNKIRDVFDKAKEFRSNANLI 145
+D I+HIRIEE+N+ RD +KAKEF S A +I
Sbjct: 46 EDVIVHIRIEEQNRNRDNVEKAKEFSSKAKVI 77
>gi|449528782|ref|XP_004171382.1| PREDICTED: uncharacterized protein LOC101228884, partial [Cucumis
sativus]
Length = 202
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNK 153
SW D+ KHK+K++ L++ ++ + IEE N+ + AN++EN PQ NK
Sbjct: 138 SWKDFKNYLKHKRKEIKLEELVVRLGIEENNRKAEKCTMDSTMDPKANIVENRPQSNK 195
>gi|147815761|emb|CAN63736.1| hypothetical protein VITISV_037249 [Vitis vinifera]
Length = 839
Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ + KHK+K++ L+D I+ ++IEE N + + S NL+E P+ NK
Sbjct: 85 SWKDFKNSLKHKRKEMGLEDLIVRLKIEEDNCVSEKKVGKHPMESKVNLVE--PKANKKI 142
Query: 156 NNPNDGHSN 164
+ +G +N
Sbjct: 143 KHFGEGPTN 151
>gi|113205447|gb|ABI34399.1| Polyprotein, putative [Solanum demissum]
Length = 564
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNK------IRDVFDKAKEFRSNANLIENTP 149
S D+ KHK+K++ L+D +I ++IEE NK IR + KA+ RS ++ EN P
Sbjct: 291 SCNDFKNYLKHKRKEMKLEDLVIRLKIEEDNKPPKRSLIRKLLPKARRERSLTDISENRP 350
Query: 150 QLN 152
+ N
Sbjct: 351 RRN 353
>gi|32487835|emb|CAE05066.1| OSJNBa0094P09.5 [Oryza sativa Japonica Group]
gi|32492383|emb|CAE05129.1| OSJNBa0079F16.21 [Oryza sativa Japonica Group]
Length = 849
Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EE+ + +D K +S+AN++ +
Sbjct: 44 SWRSFGTALKHKRQEYSVEGLIASLDVEEEAREKDAASKGHGGQSSANVVHKAQNKSKGK 103
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
K Q N + CFVCG+ H A +C +
Sbjct: 104 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQPGHLARKCPQR 145
>gi|31712063|gb|AAP68369.1| putative polyprotein, 3'-partial [Oryza sativa Japonica Group]
Length = 691
Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQ 189
K Q N + CFVCG++ H A +
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARK 254
>gi|108710862|gb|ABF98657.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 261
Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 19/145 (13%)
Query: 60 VFHVLHVYNLADYLQSSLLEEGTE--DYDKKLQ--------TWNAESWGDYIKTSKHKKK 109
+ H Y +AD S++E+ E K+L+ + A S+G +K HK++
Sbjct: 104 IMEQFHDYKMAD--NRSVVEQAHEIQTMAKELELLKCVLPDKFVARSFGTALK---HKRQ 158
Query: 110 QVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN----KTQNNPNDGHSNN 165
+ S++ I + +EEK + +D K +S+AN++ + K Q N
Sbjct: 159 EYSVEGLIASLDVEEKAREKDATSKDDGGQSSANIVHKAQNKSKGKYKAQQTTNFKKQKK 218
Query: 166 PKRLIANKKGNCFVCGKIIHYANQC 190
+ CFVCG++ H A +C
Sbjct: 219 NNNNSNQDERTCFVCGQLGHLARKC 243
>gi|147863092|emb|CAN82978.1| hypothetical protein VITISV_023328 [Vitis vinifera]
Length = 474
Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 29 LASTSNT-GKNLPDASKIELFNGEKFKCWQEKVFHVLHVYNLADYL--QSSLLEEGTEDY 85
+AS+SN NL K E FNG +FK WQ+K+ + NLA +L + +LEEG +
Sbjct: 1 MASSSNVPTMNLTHGEKPEKFNGNEFKRWQQKMLFYVTTLNLARFLHEECPILEEGETNK 60
Query: 86 DK 87
+K
Sbjct: 61 EK 62
>gi|158828138|gb|ABW81017.1| gag-pol polymerase [Arabidopsis lyrata subsp. lyrata]
Length = 1034
Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 17/106 (16%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVF---DKAKEF-------RSNANLI 145
SW + + KHKK+++SL H+RIEE ++++ DK E S ++ +
Sbjct: 112 SWKGFRRMLKHKKEELSLVQLGSHLRIEESLRVQEGGKPKDKEAETSSINMMKESGSSKM 171
Query: 146 ENTPQLNKTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCR 191
+N + NN NDG + KR K C++C K H+ CR
Sbjct: 172 KNKGKKRPFTNNTNDGSN---KRF----KSVCWICNKPGHFKRDCR 210
>gi|147799351|emb|CAN74721.1| hypothetical protein VITISV_006958 [Vitis vinifera]
Length = 487
Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW D+ KHK K++S++D I+ +RIEE N+ D F + A+++E + +K +
Sbjct: 16 SWKDFKNYLKHKHKELSMEDFIVRLRIEEDNRKNDKFVGKSFMEAKAHIMEG--ECSKKR 73
Query: 156 NNP-NDGHSNNP 166
P N+G P
Sbjct: 74 KLPFNNGKRKKP 85
>gi|218201760|gb|EEC84187.1| hypothetical protein OsI_30574 [Oryza sativa Indica Group]
Length = 317
Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIE----NTPQL 151
SW + KHK+++ S++ I + ++EK + +D K +S AN++ +
Sbjct: 115 SWRGFGTALKHKRQEYSVEGLIASLDVKEKAREKDAASKGDGGQSTANVVHKVQNKSKGK 174
Query: 152 NKTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
+K Q N N + CFVCG+ H A +C+ +
Sbjct: 175 HKAQQTTNFKKRKNNNNNPNLDERTCFVCGQPGHLARKCQQR 216
>gi|38346266|emb|CAD39659.2| OSJNBa0074B10.16 [Oryza sativa Japonica Group]
Length = 1006
Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 99 DYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIEN--------TPQ 150
D+ + KHK+++ S+ D I + ++EK + +D K E S+ANL++
Sbjct: 240 DFATSLKHKRQKFSVTDLIGSLGVDEKARAKDNRGKNIEGGSSANLVQKKNLHASHNNNN 299
Query: 151 LNKTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQC 190
N +N K+ KG+CFVCGK H+A C
Sbjct: 300 KKVKPNVKPKATTNFKKKGKGKAKGDCFVCGKPGHWAKNC 339
>gi|16905204|gb|AAL31074.1|AC091749_3 putative polyprotein [Oryza sativa Japonica Group]
gi|31431192|gb|AAP53007.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 259
Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + + K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKTREKYAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQC 190
K Q N + CFVCG+ H A +C
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQPGHLARKC 255
>gi|108711140|gb|ABF98935.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 593
Score = 39.3 bits (90), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLN--- 152
SW + KHK+++ S++ I + +EEK + +D K +S+AN++ +
Sbjct: 157 SWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK 216
Query: 153 -KTQNNPNDGHSNNPKRLIANKKGNCFVCGKII 184
K Q N + CFVCG+++
Sbjct: 217 YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVV 249
>gi|357462345|ref|XP_003601454.1| hypothetical protein MTR_3g080890 [Medicago truncatula]
gi|355490502|gb|AES71705.1| hypothetical protein MTR_3g080890 [Medicago truncatula]
Length = 134
Score = 39.3 bits (90), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 39 LPDASKIELFNGEKFKCWQEKVFHVLHVYNLADYLQSSL-LEEGTED 84
PD S+IE+F+G F W E +F +L V+++A L + L+E D
Sbjct: 36 FPDVSRIEVFDGHTFSRWHECIFTLLGVHSVASALTDVVKLDEAKSD 82
>gi|62733019|gb|AAX95136.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
Length = 1025
Score = 38.9 bits (89), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 27/119 (22%)
Query: 87 KKLQTWNA----ESWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNA 142
K + WN W ++T+ HK+++ S+ D I + +EEK + +D K E S+A
Sbjct: 149 KDMWDWNKLMRFRYWLRNLRTT-HKRQEFSVSDLIGSLGVEEKARAKDNRSKKVEGGSSA 207
Query: 143 NLIENTPQLNKTQNNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYA 187
N+++ + NP+ H+N + K +CFVCGK H+A
Sbjct: 208 NMVQ--------KKNPHASHNNKKVKPDVKPKATTNFKKKGKGKAKGDCFVCGKSRHWA 258
>gi|62733064|gb|AAX95181.1| transposon protein, putative, CACTA, En/Spm sub-class [Oryza sativa
Japonica Group]
gi|77549630|gb|ABA92427.1| transposon protein, putative, CACTA, En/Spm sub-class [Oryza sativa
Japonica Group]
Length = 1600
Score = 38.9 bits (89), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 27/119 (22%)
Query: 87 KKLQTWNA----ESWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNA 142
K + WN W ++T+ HK+++ S+ D I + +EEK + +D K E S+A
Sbjct: 149 KDMWDWNKLMRFRYWLRNLRTT-HKRQEFSVSDLIGSLGVEEKARAKDNRSKKVEGGSSA 207
Query: 143 NLIENTPQLNKTQNNPNDGHSNNPKRLIANKKG--------------NCFVCGKIIHYA 187
N+++ + NP+ H+N + K +CFVCGK H+A
Sbjct: 208 NMVQ--------KKNPHASHNNKKVKPDVKPKATTNFKKKGKGKAKGDCFVCGKSRHWA 258
>gi|51038150|gb|AAT93953.1| hypothetical protein [Oryza sativa Japonica Group]
gi|51038210|gb|AAT94013.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 457
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLI---ENTPQLN 152
SW + KHK+++ S++ I + +EEK + +D K +S AN++ +N +
Sbjct: 247 SWRGFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSTANVVHKAQNKSKGK 306
Query: 153 KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQC 190
+ N + CFVCG+ + A +C
Sbjct: 307 YKAQQTTNFKKKNNNNNPNQDERTCFVCGQPGYLARKC 344
>gi|440577370|emb|CCI55375.1| PH01B035L11.20 [Phyllostachys edulis]
Length = 456
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 34/51 (66%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIE 146
SW ++ + KHK+++ S+++ I + +EEK + +D + + E S+AN+++
Sbjct: 133 SWRNFSTSLKHKRQEFSVENLIGSLDVEEKKRAKDTYTRGNEEHSSANVVQ 183
>gi|55168272|gb|AAV44138.1| hypothetcial protein [Oryza sativa Japonica Group]
Length = 596
Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
S D+ + KHK++ S+ D I + +EEK + +D K E S ANL++ T + +
Sbjct: 480 SCSDFATSLKHKRQGFSVTDLIGFLGVEEKGRAKDNRGKVIEGGSTANLVQKT-NPHASY 538
Query: 156 NNPNDGHSNNPKRLIAN--------KKGNCFVCGK 182
NN + + N K +CFVCG+
Sbjct: 539 NNKKKVKPDVKPKATTNFKKKGKGKAKSDCFVCGR 573
>gi|55168311|gb|AAV44177.1| hypothetcial protein [Oryza sativa Japonica Group]
Length = 602
Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
S D+ + KHK++ S+ D I + +EEK + +D K E S ANL++ T + +
Sbjct: 486 SCSDFATSLKHKRQGFSVTDLIGFLGVEEKGRAKDNRGKVIEGGSTANLVQKT-NPHASY 544
Query: 156 NNPNDGHSNNPKRLIAN--------KKGNCFVCGK 182
NN + + N K +CFVCG+
Sbjct: 545 NNKKKVKPDVKPKATTNFKKKGKGKAKSDCFVCGR 579
>gi|14586969|gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi]
Length = 701
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
+W D+ KHK+K+++++ ++ +RIEE N R+ + AN +E+ P+ K +
Sbjct: 196 AWKDFKSYLKHKQKEMNIEGLVVKLRIEEDN--RNAERIGAISMAKANFVEHGPKKKKKK 253
Query: 156 NNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCR 191
P G S + +G C+ C K+ H A+ CR
Sbjct: 254 LGPKGGISKKQTKF----QGKCYNCDKMGHKASDCR 285
Score = 36.2 bits (82), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 42 ASKIELFNGEKFKCWQEKVFHVLHVYNLADYL 73
A + E FNG+ FK WQ+K+F L NLA +L
Sbjct: 39 AERPEKFNGQNFKRWQQKMFFYLTTLNLARFL 70
>gi|357167074|ref|XP_003580991.1| PREDICTED: uncharacterized protein LOC100835998 [Brachypodium
distachyon]
Length = 301
Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIE-NTPQLNKT 154
SW + + KHK+++ S+ D I + +EEK + +D + E S+AN ++ N Q +K
Sbjct: 204 SWRHFATSLKHKRQEFSVTDLIGTLDVEEKARAKDTRARGTEGGSSANFVQKNNSQSHKP 263
Query: 155 QN-NPNDG 161
+N N DG
Sbjct: 264 KNKNRFDG 271
>gi|33113964|gb|AAP94586.1| putative retrotransposon RIRE1 poly protein [Zea mays]
Length = 1309
Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 18/105 (17%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRD---------VFDKAKEFRSNANLIE 146
SW D++ + +H KKQ++L + I +EE+ + + V +K + R +
Sbjct: 185 SWRDFVTSRRHMKKQMTLTELSAAINVEERARSSNKPSQQLQAHVVEKGGD-RKFQKKKK 243
Query: 147 NTPQLNKTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCR 191
N+PQ K N P + I C+VCG H A +C+
Sbjct: 244 NSPQ--KNLNQPKSKKMKKKEDFI------CYVCGVSGHTARRCK 280
>gi|147843503|emb|CAN82056.1| hypothetical protein VITISV_010872 [Vitis vinifera]
Length = 257
Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 40 PDASKIELFNGEKFKCWQEKVFHVLHVYNLADYLQSSLLEEGTEDYDKKLQTW 92
P+ASKI+ FN FK WQE F + V +L L++ ED K L TW
Sbjct: 10 PNASKIDPFNRTLFKRWQEIAFSAIDVVDLGHI----LIDPKPEDGSKSLPTW 58
>gi|356502991|ref|XP_003520297.1| PREDICTED: uncharacterized protein LOC100797405 [Glycine max]
Length = 418
Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 18/52 (34%)
Query: 140 SNANLIENTPQLNKTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCR 191
+L N PQL +TQ N C+VCGK+ HYA +CR
Sbjct: 102 GGPHLRRNCPQLQQTQEN------------------RCYVCGKVDHYARECR 135
>gi|4335731|gb|AAD17409.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1347
Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 159 NDGHSNNPKRLIANKKGNCFVCGKIIHYANQCRHK 193
ND H N + I C+ CGKI HYAN+CR K
Sbjct: 261 NDDHGKNKRSNI-----KCYKCGKIGHYANECRSK 290
>gi|218198054|gb|EEC80481.1| hypothetical protein OsI_22711 [Oryza sativa Indica Group]
Length = 360
Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQ 155
SW + KH +++ S++ I + +EEK + +D K + AN++ T +K +
Sbjct: 28 SWRGFGTALKHNRQEYSVEGLIASLDVEEKAREKDAASKGDGGQPTANVVHKTQNKSKGK 87
Query: 156 ---NNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQC 190
+ N + CFVCG+ H A +C
Sbjct: 88 YKAQQTPNFKKKNNNNNPNQDERTCFVCGQPGHLARKC 125
>gi|18542177|gb|AAL75486.1|AF466202_12 putative Fourf gag/pol protein [Zea mays]
Length = 1292
Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 12/105 (11%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIE--NTPQLNK 153
SW D+ + KHK+++ ++++ I + +EE+ + +D K E S AN+++ N + NK
Sbjct: 172 SWKDFATSLKHKRQEFNVEELIGTLDVEERARTKDS-GKGVE-TSTANVVQKRNFRKFNK 229
Query: 154 TQNNPNDGHSNNP--------KRLIANKKGNCFVCGKIIHYANQC 190
+N ++N P K KG CFVCG H+A +C
Sbjct: 230 KKNQNKQENANKPVHTAQFKKKNNNNKGKGGCFVCGSDQHWAREC 274
>gi|308498213|ref|XP_003111293.1| hypothetical protein CRE_03677 [Caenorhabditis remanei]
gi|308240841|gb|EFO84793.1| hypothetical protein CRE_03677 [Caenorhabditis remanei]
Length = 396
Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 163 SNNPKRLIANKKGNCFVCGKIIHYANQCRHKAQ 195
S N K+ +K CF CGK H+ +CR KA+
Sbjct: 287 SGNSKKSTPKRKNTCFFCGKEGHFVKECREKAK 319
>gi|228475980|ref|ZP_04060688.1| prephenate dehydrogenase [Staphylococcus hominis SK119]
gi|418620034|ref|ZP_13182845.1| prephenate dehydrogenase [Staphylococcus hominis VCU122]
gi|228269803|gb|EEK11283.1| prephenate dehydrogenase [Staphylococcus hominis SK119]
gi|374823597|gb|EHR87592.1| prephenate dehydrogenase [Staphylococcus hominis VCU122]
Length = 363
Score = 36.6 bits (83), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
Query: 88 KLQTWNAESWGDYIKTSKH------KKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFR 139
++ + NAE W D + ++K + Q ++KD I+ ++ EE+ +I FD+AK FR
Sbjct: 223 RIASSNAEMWKDILLSNKQNIISLLEDMQTNIKDMIVKLKNEEEQQIYQFFDEAKIFR 280
>gi|53749347|gb|AAU90206.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1256
Score = 36.6 bits (83), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLI---ENTPQLN 152
SW + KHK+++ S++ I + IEEK + +D K +S AN++ +N +
Sbjct: 260 SWRGFGTALKHKRQEYSVEGWIASLDIEEKAQEKDAASKGDGGQSTANVVHKAQNKSKGK 319
Query: 153 KTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQC 190
+ N + CFVC + H A +C
Sbjct: 320 YKAQQTTNFKKKNNNNNSNQDERTCFVCDQPDHLARKC 357
>gi|314936482|ref|ZP_07843829.1| prephenate dehydrogenase [Staphylococcus hominis subsp. hominis
C80]
gi|313655101|gb|EFS18846.1| prephenate dehydrogenase [Staphylococcus hominis subsp. hominis
C80]
Length = 363
Score = 36.6 bits (83), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
Query: 88 KLQTWNAESWGDYIKTSKH------KKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFR 139
++ + NAE W D + ++K + Q ++KD I+ ++ EE+ +I FD+AK FR
Sbjct: 223 RIASSNAEMWKDILLSNKQNIISLLEDMQTNIKDMIVKLKNEEEQQIYQFFDEAKIFR 280
>gi|356510598|ref|XP_003524024.1| PREDICTED: uncharacterized protein LOC100790248 [Glycine max]
Length = 376
Score = 36.6 bits (83), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 18/49 (36%)
Query: 143 NLIENTPQLNKTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQCR 191
+L N PQL +TQ N C+VCGK+ HYA +CR
Sbjct: 60 HLKRNCPQLQQTQEN------------------RCYVCGKVGHYARECR 90
>gi|255554702|ref|XP_002518389.1| conserved hypothetical protein [Ricinus communis]
gi|223542484|gb|EEF44025.1| conserved hypothetical protein [Ricinus communis]
Length = 76
Score = 36.2 bits (82), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 41 DASKIELFNGEKFKCWQEKVFHVLHVYNLA 70
D SKIE+F G+ +K W ++VF +L ++ +A
Sbjct: 9 DISKIEVFGGQNYKRWHKRVFSILDMHGIA 38
>gi|212690652|ref|ZP_03298780.1| hypothetical protein BACDOR_00139 [Bacteroides dorei DSM 17855]
gi|237709694|ref|ZP_04540175.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|265754326|ref|ZP_06089515.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|212666752|gb|EEB27324.1| hypothetical protein BACDOR_00139 [Bacteroides dorei DSM 17855]
gi|229456330|gb|EEO62051.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|263235035|gb|EEZ20590.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 774
Score = 36.2 bits (82), Expect = 7.8, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 13 IALAAPRLLDLFVYDLLASTSNTGKNLPDASKIELFNGEKFKCWQEKVFHVLHVYNLADY 72
I+ A+P L DL + + + + P+ ++ E WQ+ +F+ +++ DY
Sbjct: 523 ISNASPSLGDLSAVEQIVDSLQIRRGNPNLKAYLRYHTELTYEWQKGIFYS-NLWGAYDY 581
Query: 73 LQSSLLEEGTEDYDKKLQTW-NAESW 97
+++++E +D DK +QTW N + W
Sbjct: 582 QPNAIMDEKYQDGDKIVQTWDNQKDW 607
>gi|150002912|ref|YP_001297656.1| hypothetical protein BVU_0314 [Bacteroides vulgatus ATCC 8482]
gi|149931336|gb|ABR38034.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
Length = 774
Score = 36.2 bits (82), Expect = 7.8, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 13 IALAAPRLLDLFVYDLLASTSNTGKNLPDASKIELFNGEKFKCWQEKVFHVLHVYNLADY 72
I+ A+P L DL + + + + P+ ++ E WQ+ +F+ +++ DY
Sbjct: 523 ISNASPSLGDLSAVEQIVDSLQIRRGNPNLKAYLRYHTELTYEWQKGIFYS-NLWGAYDY 581
Query: 73 LQSSLLEEGTEDYDKKLQTW-NAESW 97
+++++E +D DK +QTW N + W
Sbjct: 582 QPNAIMDEKYQDGDKIVQTWDNQKDW 607
>gi|294777947|ref|ZP_06743383.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
gi|294448211|gb|EFG16775.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
Length = 769
Score = 36.2 bits (82), Expect = 7.9, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 13 IALAAPRLLDLFVYDLLASTSNTGKNLPDASKIELFNGEKFKCWQEKVFHVLHVYNLADY 72
I+ A+P L DL + + + + P+ ++ E WQ+ +F+ +++ DY
Sbjct: 518 ISNASPSLGDLSAVEQIVDSLQIRRGNPNLKAYLRYHTELTYEWQKGIFYS-NLWGAYDY 576
Query: 73 LQSSLLEEGTEDYDKKLQTW-NAESW 97
+++++E +D DK +QTW N + W
Sbjct: 577 QPNAIMDEKYQDGDKIVQTWDNQKDW 602
>gi|345515786|ref|ZP_08795285.1| hypothetical protein BSEG_02638 [Bacteroides dorei 5_1_36/D4]
gi|423230035|ref|ZP_17216440.1| hypothetical protein HMPREF1063_02260 [Bacteroides dorei
CL02T00C15]
gi|423241698|ref|ZP_17222810.1| hypothetical protein HMPREF1065_03433 [Bacteroides dorei
CL03T12C01]
gi|423247126|ref|ZP_17228177.1| hypothetical protein HMPREF1064_04383 [Bacteroides dorei
CL02T12C06]
gi|345455676|gb|EEO46497.2| hypothetical protein BSEG_02638 [Bacteroides dorei 5_1_36/D4]
gi|392632245|gb|EIY26208.1| hypothetical protein HMPREF1063_02260 [Bacteroides dorei
CL02T00C15]
gi|392633366|gb|EIY27310.1| hypothetical protein HMPREF1064_04383 [Bacteroides dorei
CL02T12C06]
gi|392640725|gb|EIY34518.1| hypothetical protein HMPREF1065_03433 [Bacteroides dorei
CL03T12C01]
Length = 769
Score = 36.2 bits (82), Expect = 8.0, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 13 IALAAPRLLDLFVYDLLASTSNTGKNLPDASKIELFNGEKFKCWQEKVFHVLHVYNLADY 72
I+ A+P L DL + + + + P+ ++ E WQ+ +F+ +++ DY
Sbjct: 518 ISNASPSLGDLSAVEQIVDSLQIRRGNPNLKAYLRYHTELTYEWQKGIFYS-NLWGAYDY 576
Query: 73 LQSSLLEEGTEDYDKKLQTW-NAESW 97
+++++E +D DK +QTW N + W
Sbjct: 577 QPNAIMDEKYQDGDKIVQTWDNQKDW 602
>gi|113205334|gb|AAT38766.2| Polyprotein, putative [Solanum demissum]
Length = 1355
Score = 36.2 bits (82), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNK 127
SW D+ KHK+K++ L+D +I ++IEE NK
Sbjct: 270 SWNDFKNYLKHKRKEMKLEDLVIRLKIEEDNK 301
>gi|145552836|ref|XP_001462093.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124429931|emb|CAK94720.1| unnamed protein product [Paramecium tetraurelia]
Length = 161
Score = 35.8 bits (81), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 146 ENTPQLNKTQNNPNDGHSNNPKRLIANKK-GNCFVCGKIIHYANQCRHKA 194
E T +N+ DG++ + A KK G C+ CG+I H+A CR K
Sbjct: 57 EATEAVNEMNQKDQDGNTFVVEIARAKKKDGECYKCGRIGHFARNCRQKG 106
>gi|145483577|ref|XP_001427811.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124394894|emb|CAK60413.1| unnamed protein product [Paramecium tetraurelia]
Length = 161
Score = 35.8 bits (81), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 146 ENTPQLNKTQNNPNDGHSNNPKRLIANKK-GNCFVCGKIIHYANQCRHKA 194
E T +N+ DG++ + A KK G C+ CG+I H+A CR K
Sbjct: 57 EATEAVNEMNQKDQDGNTFVVEIARAKKKDGECYKCGRIGHFARNCRQKG 106
>gi|262392380|ref|YP_003284237.1| unnamed protein product [Sugarcane bacilliform virus]
gi|240114281|gb|ACS44708.1| ORF3 protein [Sugarcane bacilliform virus]
Length = 1792
Score = 35.8 bits (81), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 155 QNNPNDGHSNNPKRL-IANKKGNCFVCGKIIHYANQCRHKAQ 195
+ P+ H KR + N+K C+ CG+ HYA++CR+K Q
Sbjct: 712 KGKPHKTHVRIDKRKHLKNRKCKCYACGEEGHYASECRNKKQ 753
>gi|291226376|ref|XP_002733175.1| PREDICTED: superoxide dismutase-like [Saccoglossus kowalevskii]
Length = 494
Score = 35.8 bits (81), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 20/108 (18%)
Query: 83 EDYDKKLQTWNAESWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNA 142
ED D + + W A S + S+ +K+QVS K +K+ F+ SN
Sbjct: 104 EDSDDEKRIWKAVS-----RASRKQKEQVSKK--------RKKSWYSQRFNPYNACASNQ 150
Query: 143 NLIENTPQLNKTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQC 190
+ Q ++ ++ P+ +N P A K G+CF CG++ H+ N+C
Sbjct: 151 D-----GQASQHRDIPS--RTNTPSNGSALKPGSCFACGELGHWRNEC 191
>gi|14719283|gb|AAK73108.1|AF391808_10 Fourf gag/pol protein [Zea mays]
gi|168251067|gb|ACA21850.1| Fourf gag/pol protein [Zea mays]
Length = 1279
Score = 35.8 bits (81), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 96 SWGDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIEN-------- 147
SW D+ + KHK+++ ++++ I + +EE+ + +D K E S AN+++
Sbjct: 132 SWKDFATSLKHKRQEFNVEELIGTLDVEERARTKDS-GKGVE-TSTANVVQKRNFRKFNK 189
Query: 148 --TPQLNKTQNNPNDGHSNNPKRLIANKKGNCFVCGKIIHYANQC 190
+ N P K KG CFVCG H+A +C
Sbjct: 190 KKNQNKPENANKPVHTAQFKKKNNNNKGKGGCFVCGSDQHWAREC 234
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,109,851,405
Number of Sequences: 23463169
Number of extensions: 127024493
Number of successful extensions: 504744
Number of sequences better than 100.0: 360
Number of HSP's better than 100.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 205
Number of HSP's that attempted gapping in prelim test: 503940
Number of HSP's gapped (non-prelim): 714
length of query: 195
length of database: 8,064,228,071
effective HSP length: 135
effective length of query: 60
effective length of database: 9,191,667,552
effective search space: 551500053120
effective search space used: 551500053120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 73 (32.7 bits)