BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048519
         (195 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1DAP|A Chain A, C. Glutamicum Dap Dehydrogenase In Complex With Nadp+
 pdb|1DAP|B Chain B, C. Glutamicum Dap Dehydrogenase In Complex With Nadp+
 pdb|3DAP|A Chain A, C. Glutamicum Dap Dehydrogenase In Complex With Nadp+ And
           The Inhibitor 5s-Isoxazoline
 pdb|3DAP|B Chain B, C. Glutamicum Dap Dehydrogenase In Complex With Nadp+ And
           The Inhibitor 5s-Isoxazoline
 pdb|1F06|A Chain A, Three Dimensional Structure Of The Ternary Complex Of
           Corynebacterium Glutamicum Diaminopimelate Dehydrogenase
           Nadph-l-2-amino-6-methylene- Pimelate
 pdb|1F06|B Chain B, Three Dimensional Structure Of The Ternary Complex Of
           Corynebacterium Glutamicum Diaminopimelate Dehydrogenase
           Nadph-l-2-amino-6-methylene- Pimelate
 pdb|2DAP|A Chain A, C. Glutamicum Dap Dehydrogenase In Complex With Dap
          Length = 320

 Score = 28.5 bits (62), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 98  GDYIKTSKHKKKQVSLKDAIIHIRIEEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQNN 157
           GD      HK++   + DA  H RIE  N IR + D    +    N I+     ++    
Sbjct: 185 GDLTGKQTHKRQCFVVADAADHERIE--NDIRTMPDYFVGYEVEVNFIDEATFDSEHTGM 242

Query: 158 PNDGH 162
           P+ GH
Sbjct: 243 PHGGH 247


>pdb|2J3X|A Chain A, Crystal Structure Of The Enzymatic Component C2-I Of The
           C2-Toxin From Clostridium Botulinum At Ph 3.0
           (Mut-S361r)
          Length = 431

 Score = 28.5 bits (62), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 85  YDKKLQTWNAESWGDYIKTSKHKK 108
           Y+K  + W AE++GDYI    H++
Sbjct: 222 YNKGSEAWGAENYGDYISKLSHEQ 245


>pdb|2J3Z|A Chain A, Crystal Structure Of The Enzymatic Component C2-i Of The
           C2-toxin From Clostridium Botulinum At Ph 6.1
 pdb|2J3Z|B Chain B, Crystal Structure Of The Enzymatic Component C2-i Of The
           C2-toxin From Clostridium Botulinum At Ph 6.1
 pdb|2J3Z|C Chain C, Crystal Structure Of The Enzymatic Component C2-i Of The
           C2-toxin From Clostridium Botulinum At Ph 6.1
 pdb|2J3Z|D Chain D, Crystal Structure Of The Enzymatic Component C2-i Of The
           C2-toxin From Clostridium Botulinum At Ph 6.1
 pdb|2J3Z|E Chain E, Crystal Structure Of The Enzymatic Component C2-i Of The
           C2-toxin From Clostridium Botulinum At Ph 6.1
 pdb|2J3Z|F Chain F, Crystal Structure Of The Enzymatic Component C2-i Of The
           C2-toxin From Clostridium Botulinum At Ph 6.1
          Length = 431

 Score = 28.5 bits (62), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 85  YDKKLQTWNAESWGDYIKTSKHKK 108
           Y+K  + W AE++GDYI    H++
Sbjct: 222 YNKGSEAWGAENYGDYISKLSHEQ 245


>pdb|2J3V|A Chain A, Crystal Structure Of The Enzymatic Component C2-I Of The
           C2- Toxin From Clostridium Botulinum At Ph 3.0
          Length = 431

 Score = 28.5 bits (62), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 85  YDKKLQTWNAESWGDYIKTSKHKK 108
           Y+K  + W AE++GDYI    H++
Sbjct: 222 YNKGSEAWGAENYGDYISKLSHEQ 245


>pdb|1VBI|A Chain A, Crystal Structure Of Type 2 MalateLACTATE DEHYDROGENASE
           FROM THERMUS Thermophilus Hb8
 pdb|1X0A|A Chain A, Crystal Structure Of Type Ii MalateLACTATE DEHYDROGENASE
           FROM THERMUS Thermophilus Hb8
          Length = 344

 Score = 26.9 bits (58), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 7   SLATAPIALAAPRLLDLFVYDLLASTSNTGK 37
           +L T P+A AAP    + V DL  S S  GK
Sbjct: 152 ALGTNPLAFAAPAPQGILVADLATSESAMGK 182


>pdb|3TTM|A Chain A, Crystal Structure Of Spud In Complex With Putrescine
 pdb|3TTM|B Chain B, Crystal Structure Of Spud In Complex With Putrescine
          Length = 346

 Score = 26.9 bits (58), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 63 VLHVYNLADYLQSSLLEEGTED 84
          VLHVYN +DY+    LE+ T++
Sbjct: 9  VLHVYNWSDYIAPDTLEKFTKE 30


>pdb|3TTK|A Chain A, Crystal Structure Of Apo-Spud
 pdb|3TTK|B Chain B, Crystal Structure Of Apo-Spud
 pdb|3TTK|C Chain C, Crystal Structure Of Apo-Spud
          Length = 345

 Score = 26.9 bits (58), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 63 VLHVYNLADYLQSSLLEEGTED 84
          VLHVYN +DY+    LE+ T++
Sbjct: 9  VLHVYNWSDYIAPDTLEKFTKE 30


>pdb|3M9W|A Chain A, Open Ligand-Free Crystal Structure Of Xylose Binding
           Protein From Escherichia Coli
 pdb|3M9X|A Chain A, Open Liganded Crystal Structure Of Xylose Binding Protein
           From Escherichia Coli
 pdb|3MA0|A Chain A, Closed Liganded Crystal Structure Of Xylose Binding
           Protein From Escherichia Coli
 pdb|3MA0|B Chain B, Closed Liganded Crystal Structure Of Xylose Binding
           Protein From Escherichia Coli
 pdb|3MA0|C Chain C, Closed Liganded Crystal Structure Of Xylose Binding
           Protein From Escherichia Coli
          Length = 313

 Score = 26.9 bits (58), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 7/59 (11%)

Query: 109 KQVSLKDAIIHIRIEEKNKIRDVFDK------AKEFRSNANLIENTPQLNKTQNNPNDG 161
           K+V +  AI  +R+E   K RD+F K      AK F  +AN  E T Q+++ +N  N G
Sbjct: 1   KEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEET-QMSQIENMINRG 58


>pdb|2G8S|A Chain A, Crystal Structure Of The Soluble Aldose Sugar
           Dehydrogenase (Asd) From Escherichia Coli In The
           Apo-Form
 pdb|2G8S|B Chain B, Crystal Structure Of The Soluble Aldose Sugar
           Dehydrogenase (Asd) From Escherichia Coli In The
           Apo-Form
          Length = 353

 Score = 26.6 bits (57), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 37  KNLPDASKIELFNGEKFKCWQEKVF 61
           K+ P  S    +N +KF  WQ+K+F
Sbjct: 268 KDSPAVSGXAFYNSDKFPQWQQKLF 292


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.132    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,036,857
Number of Sequences: 62578
Number of extensions: 248714
Number of successful extensions: 603
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 593
Number of HSP's gapped (non-prelim): 13
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)