BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048519
         (195 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P19199|POL_COYMV Polyprotein P3 OS=Commelina yellow mottle virus PE=3 SV=2
          Length = 1886

 Score = 35.4 bits (80), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 12/21 (57%), Positives = 17/21 (80%)

Query: 173 KKGNCFVCGKIIHYANQCRHK 193
           +K  C++CG+  HYANQCR+K
Sbjct: 877 RKCKCYICGQEGHYANQCRNK 897


>sp|P51516|GAG_SRV2 Gag polyprotein OS=Simian retrovirus SRV-2 GN=gag PE=3 SV=3
          Length = 654

 Score = 31.6 bits (70), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 3/28 (10%)

Query: 167 KRLIANK---KGNCFVCGKIIHYANQCR 191
           K L+ NK   +G CF CGK  H+A  CR
Sbjct: 533 KDLLNNKNKDRGGCFKCGKKGHFAKDCR 560


>sp|D7DQH5|PUS10_METV3 tRNA pseudouridine synthase Pus10 OS=Methanococcus voltae (strain
           ATCC BAA-1334 / A3) GN=pus10 PE=3 SV=1
          Length = 519

 Score = 30.4 bits (67), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 13/107 (12%)

Query: 63  VLHVYNLADYLQSSLLEEGTEDYDKKLQTWNAESWGDYIKTSKHKKKQVSLKDAIIHIRI 122
           +L  YNL +     +       Y K ++  N +  G  IKT      +  LKD I     
Sbjct: 7   ILQKYNLCNRCYGRI-------YAKLMRMGNKDR-GTSIKTVIAMNFEEKLKDLI----- 53

Query: 123 EEKNKIRDVFDKAKEFRSNANLIENTPQLNKTQNNPNDGHSNNPKRL 169
           EEKN + D+   +++   N  + ENT     T+N  +D   +N +++
Sbjct: 54  EEKNNLIDIISNSQDINENEEIDENTKNNEDTENKADDKSQSNEEKI 100


>sp|Q493E1|SYK_BLOPB Lysine--tRNA ligase OS=Blochmannia pennsylvanicus (strain BPEN)
           GN=lysS PE=3 SV=1
          Length = 509

 Score = 30.4 bits (67), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 48  FNGEKFKCWQEKVFHVLHVYN-LADYLQSSLLEEGT-EDYDKKLQTWNAESWGDYIKTSK 105
           F  E    +    F ++ +Y   ADY    +L +       +K+   N  ++GDY    K
Sbjct: 264 FRNEGISSYHNPEFTMMEIYMAYADYRDIIILVQNLLRSVTQKILGSNIINYGDYELDFK 323

Query: 106 HKKKQVSLKDAIIH 119
           H   Q+S+K+AI++
Sbjct: 324 HPFTQISIKEAILY 337


>sp|P22751|PLYX_ERWCH Pectate disaccharide-lyase OS=Erwinia chrysanthemi GN=pelX PE=1
           SV=1
          Length = 749

 Score = 30.4 bits (67), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 18/96 (18%)

Query: 101 IKTSKHKKKQVSLKDA---IIHIRIEEKNKIR------------DVFDKAKEFRSNANLI 145
           + +  H  +  S KDA    + +R+ E N IR            D+F+K ++  + A +I
Sbjct: 522 LNSESHSNQHPSKKDADGFAVKMRVGEGNVIRGAFSHDNVDDGFDLFNKIEDGPNGAVMI 581

Query: 146 ENTPQLNKTQNNPNDGHSNNPKRLIANKKGNCFVCG 181
           EN+  LN T N    G    P   +A++  N    G
Sbjct: 582 ENSISLNNTSNGFKLGGEGQP---VAHQVKNSIAIG 614


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.132    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,616,648
Number of Sequences: 539616
Number of extensions: 3120993
Number of successful extensions: 23257
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 21940
Number of HSP's gapped (non-prelim): 1203
length of query: 195
length of database: 191,569,459
effective HSP length: 111
effective length of query: 84
effective length of database: 131,672,083
effective search space: 11060454972
effective search space used: 11060454972
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)