BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048524
         (313 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4HJY|A Chain A, 2.4 A Crystal Structure Of E. Coli Mlte-E64q With Bound
           Chitopentaose
 pdb|4HJY|B Chain B, 2.4 A Crystal Structure Of E. Coli Mlte-E64q With Bound
           Chitopentaose
 pdb|4HJZ|A Chain A, 1.9 A Crystal Structure Of E. Coli Mlte-E64q With Bound
           Chitopentaose
 pdb|4HJZ|B Chain B, 1.9 A Crystal Structure Of E. Coli Mlte-E64q With Bound
           Chitopentaose
          Length = 206

 Score = 29.6 bits (65), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/67 (26%), Positives = 27/67 (40%)

Query: 182 EIIITITKDKSSGNWWLLMQDQFIGYWPGSIFTSLADCSTEINWGGEITNSEFAGHHTST 241
           ++I  I   +S GN   + +   IG       TS  D    + W GE T SE      + 
Sbjct: 58  QLITAIIAIQSGGNPNAVSKSNAIGLMQLKASTSGRDVYRRMGWSGEPTTSELKNPERNI 117

Query: 242 QMGSGHF 248
            MG+ + 
Sbjct: 118 SMGAAYL 124


>pdb|3T36|A Chain A, Crystal Structure Of Lytic Transglycosylase Mlte From
           Eschericha Coli
 pdb|3T36|B Chain B, Crystal Structure Of Lytic Transglycosylase Mlte From
           Eschericha Coli
 pdb|3T36|C Chain C, Crystal Structure Of Lytic Transglycosylase Mlte From
           Eschericha Coli
 pdb|3T36|D Chain D, Crystal Structure Of Lytic Transglycosylase Mlte From
           Eschericha Coli
 pdb|3T36|E Chain E, Crystal Structure Of Lytic Transglycosylase Mlte From
           Eschericha Coli
 pdb|4HJV|A Chain A, Crystal Structure Of E. Coli Mlte With Bound Bulgecin And
           Murodipeptide
 pdb|4HJV|B Chain B, Crystal Structure Of E. Coli Mlte With Bound Bulgecin And
           Murodipeptide
 pdb|4HJV|C Chain C, Crystal Structure Of E. Coli Mlte With Bound Bulgecin And
           Murodipeptide
 pdb|4HJV|D Chain D, Crystal Structure Of E. Coli Mlte With Bound Bulgecin And
           Murodipeptide
 pdb|4HJV|E Chain E, Crystal Structure Of E. Coli Mlte With Bound Bulgecin And
           Murodipeptide
          Length = 203

 Score = 29.6 bits (65), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/67 (26%), Positives = 27/67 (40%)

Query: 182 EIIITITKDKSSGNWWLLMQDQFIGYWPGSIFTSLADCSTEINWGGEITNSEFAGHHTST 241
           ++I  I   +S GN   + +   IG       TS  D    + W GE T SE      + 
Sbjct: 55  QLITAIIAIESGGNPNAVSKSNAIGLMQLKASTSGRDVYRRMGWSGEPTTSELKNPERNI 114

Query: 242 QMGSGHF 248
            MG+ + 
Sbjct: 115 SMGAAYL 121


>pdb|2Y8P|A Chain A, Crystal Structure Of An Outer Membrane-Anchored Endolytic
           Peptidoglycan Lytic Transglycosylase (Mlte) From
           Escherichia Coli
 pdb|2Y8P|B Chain B, Crystal Structure Of An Outer Membrane-Anchored Endolytic
           Peptidoglycan Lytic Transglycosylase (Mlte) From
           Escherichia Coli
          Length = 194

 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/67 (26%), Positives = 27/67 (40%)

Query: 182 EIIITITKDKSSGNWWLLMQDQFIGYWPGSIFTSLADCSTEINWGGEITNSEFAGHHTST 241
           ++I  I   +S GN   + +   IG       TS  D    + W GE T SE      + 
Sbjct: 38  QLITAIIAIESGGNPNAVSKSNAIGLMQLKASTSGRDVYRRMGWSGEPTTSELKNPERNI 97

Query: 242 QMGSGHF 248
            MG+ + 
Sbjct: 98  SMGAAYL 104


>pdb|3GO6|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
           In Complex With Ribose And Amp-Pnp
 pdb|3GO6|B Chain B, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
           In Complex With Ribose And Amp-Pnp
 pdb|3GO7|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
           In Complex With Ribose
 pdb|3GO7|B Chain B, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
           In Complex With Ribose
          Length = 310

 Score = 28.1 bits (61), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 9/82 (10%)

Query: 55  TVSQKRRANDFSAPPGHEYALVALVGGQYYGARATINVWNPATYQGEFSFAQIWVGSGEG 114
            ++ +  AND+ +PP H    + + G +Y GA     V  P     +         +G G
Sbjct: 196 VIANEHEANDWPSPPTHFVITLGVRGARYVGADGVFEVPAPTVTPVDT--------AGAG 247

Query: 115 DE-ANTMEVGWLVNNGENKTRL 135
           D  A  +   W  N G    RL
Sbjct: 248 DVFAGVLAANWPRNPGSPAERL 269


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.137    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,960,172
Number of Sequences: 62578
Number of extensions: 483223
Number of successful extensions: 942
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 938
Number of HSP's gapped (non-prelim): 8
length of query: 313
length of database: 14,973,337
effective HSP length: 99
effective length of query: 214
effective length of database: 8,778,115
effective search space: 1878516610
effective search space used: 1878516610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)