BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048527
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I9Y|A Chain A, Solution Structure Of Arabidopsis Thaliana Protein
At1g70830, A Member Of The Major Latex Protein Family
Length = 166
Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 99/157 (63%), Gaps = 4/157 (2%)
Query: 2 SLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFT 61
SL G+LE +E+KASADK H +F+ +PH V+ SP ++Q C+L EG+WG G+++ W +
Sbjct: 14 SLVGKLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYV 73
Query: 62 RYAGNPQIVKELIEVVDNENYITIFKLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRF 121
+ G ++ KE IE V+ + + F++IEG++++ YKSF +VT K GS+V +
Sbjct: 74 -HDGEAKVAKERIEAVEPDKNLITFRVIEGDLMKE-YKSFLLTIQVTPKPGGP-GSIVHW 130
Query: 122 TYKYERKNENVPDLESKVLEMMINIVKNIDAYLIQHE 158
+YE+ +E V E+ +L+ + + K ID +L+ E
Sbjct: 131 HLEYEKISEEVAHPET-LLQFCVEVSKEIDEHLLAEE 166
>pdb|1E09|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Length = 159
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 69/138 (50%), Gaps = 16/138 (11%)
Query: 30 IVTSISPQSVQSCELIEGEWGRPGAVICWTF---TRYAGNPQIVKELIEVVDNENYITIF 86
+V I+PQ+++ E++EG+ G PG + TF ++Y VK I+ +D ENY +
Sbjct: 29 LVPKIAPQAIKHSEILEGDGG-PGTIKKITFGEGSQYG----YVKHKIDSIDKENYSYSY 83
Query: 87 KLIEGNVL-EMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLESKV---LEM 142
LIEG+ L + L K Y V GGS+++ T Y K NV E V E
Sbjct: 84 TLIEGDALGDTLEKISYETKLVASPS---GGSIIKSTSHYHTKG-NVEIKEEHVKAGKEK 139
Query: 143 MINIVKNIDAYLIQHEEA 160
N+ K I+ YL H +A
Sbjct: 140 ASNLFKLIETYLKGHPDA 157
>pdb|1H2O|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Mutant E45w
Length = 159
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 65/135 (48%), Gaps = 10/135 (7%)
Query: 30 IVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYITIFKLI 89
+V I+PQ+++ E++ G+ G PG + TF VK I+ +D ENY + LI
Sbjct: 29 LVPKIAPQAIKHSEILWGD-GGPGTIKKITFGE-GSQYGYVKHKIDSIDKENYSYSYTLI 86
Query: 90 EGNVL-EMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLESKV---LEMMIN 145
EG+ L + L K Y V GGS+++ T Y K NV E V E N
Sbjct: 87 EGDALGDTLEKISYETKLVASPS---GGSIIKSTSHYHTKG-NVEIKEEHVKAGKEKASN 142
Query: 146 IVKNIDAYLIQHEEA 160
+ K I+ YL H +A
Sbjct: 143 LFKLIETYLKGHPDA 157
>pdb|4A84|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
F30v Mutant In Complex With Deoxycholate
Length = 159
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 71/135 (52%), Gaps = 8/135 (5%)
Query: 29 HIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNP-QIVKELIEVVDNENYITIFK 87
++V ++PQ++ S E IEG G PG + +F G P + VK+ ++ VD+ N+ +
Sbjct: 28 NLVPKVAPQAISSVENIEGNGG-PGTIKKISFPE--GFPFKYVKDRVDEVDHTNFKYNYS 84
Query: 88 LIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLE--SKVLEMMIN 145
+IEG + + + K+ D GGS+++ + KY K ++ E EM
Sbjct: 85 VIEGGPIGDTLEKISNEIKIVATPD--GGSILKISNKYHTKGDHEVKAEQVKASKEMGET 142
Query: 146 IVKNIDAYLIQHEEA 160
+++ +++YL+ H +A
Sbjct: 143 LLRAVESYLLAHSDA 157
>pdb|4A80|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
pdb|4A81|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Ternary Complex With 8-Anilinonaphthalene-1-Sulfonate
( Ans) And Deoxycholic Acid
pdb|4A83|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Deoxycholate.
pdb|4A85|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Kinetin.
pdb|4A86|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Ternary Complex With Kinetin And
8-Anilinonaphthalene-1- Sulfonate (Ans)
pdb|4A87|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Naringenin.
pdb|4A88|A Chain A, Crystal Structure Of Native Major Birch Pollen Allergen
Bet V 1 Isoform A
pdb|4A8G|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Dimethylbenzylammonium Propane Sulfonate
Length = 159
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 70/135 (51%), Gaps = 8/135 (5%)
Query: 29 HIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNP-QIVKELIEVVDNENYITIFK 87
++ ++PQ++ S E IEG G PG + +F G P + VK+ ++ VD+ N+ +
Sbjct: 28 NLFPKVAPQAISSVENIEGNGG-PGTIKKISFPE--GFPFKYVKDRVDEVDHTNFKYNYS 84
Query: 88 LIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLE--SKVLEMMIN 145
+IEG + + + K+ D GGS+++ + KY K ++ E EM
Sbjct: 85 VIEGGPIGDTLEKISNEIKIVATPD--GGSILKISNKYHTKGDHEVKAEQVKASKEMGET 142
Query: 146 IVKNIDAYLIQHEEA 160
+++ +++YL+ H +A
Sbjct: 143 LLRAVESYLLAHSDA 157
>pdb|2LPX|A Chain A, Solution Structure Of Strawberry Allergen Fra A 1e
Length = 170
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 16/135 (11%)
Query: 30 IVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYITIFKLI 89
++ I+PQ+V+ E++EG+ G PG + TF + VK I +D N+ + LI
Sbjct: 30 LIPKIAPQAVKCAEILEGDGG-PGTIKKITFGE-GSHYGYVKHKIHSIDKVNHTYSYSLI 87
Query: 90 EGNVL-EMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLESK------VLEM 142
EG+ L E + K Y V+ GG++++ T KY K D+E K E
Sbjct: 88 EGDALSENIEKIDYETKLVSAP---HGGTIIKTTSKYHTKG----DVEIKEEHVKAGKEK 140
Query: 143 MINIVKNIDAYLIQH 157
++ K I+ YL H
Sbjct: 141 AAHLFKLIEGYLKDH 155
>pdb|1FSK|A Chain A, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|D Chain D, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|G Chain G, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|J Chain J, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1BV1|A Chain A, Birch Pollen Allergen Bet V 1
pdb|1BTV|A Chain A, Structure Of Bet V 1, Nmr, 20 Structures
Length = 159
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 70/135 (51%), Gaps = 8/135 (5%)
Query: 29 HIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNP-QIVKELIEVVDNENYITIFK 87
++ ++PQ++ S E IEG G PG + +F G P + VK+ ++ VD+ N+ +
Sbjct: 28 NLFPKVAPQAISSVENIEGNGG-PGTIKKISFPE--GLPFKYVKDRVDEVDHTNFKYNYS 84
Query: 88 LIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLE--SKVLEMMIN 145
+IEG + + + K+ D GGS+++ + KY K ++ E EM
Sbjct: 85 VIEGGPIGDTLEKISNEIKIVATPD--GGSILKISNKYHTKGDHEVKAEQVKASKEMGET 142
Query: 146 IVKNIDAYLIQHEEA 160
+++ +++YL+ H +A
Sbjct: 143 LLRAVESYLLAHSDA 157
>pdb|1B6F|A Chain A, Birch Pollen Allergen Bet V 1
Length = 159
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 70/135 (51%), Gaps = 8/135 (5%)
Query: 29 HIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNP-QIVKELIEVVDNENYITIFK 87
++ ++PQ++ S E IEG G PG + +F G P + VK+ ++ VD+ N+ +
Sbjct: 28 NLFPKVAPQAISSVENIEGNGG-PGTIKKISFPE--GFPFKYVKDRVDEVDHTNFKYNYS 84
Query: 88 LIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLE--SKVLEMMIN 145
+IEG + + + K+ D GGS+++ + KY K ++ E E+
Sbjct: 85 VIEGGPIGDTLEKISNEIKIVATPD--GGSILKISNKYHTKGDHEVKAEQVKASKELGET 142
Query: 146 IVKNIDAYLIQHEEA 160
+++ +++YL+ H +A
Sbjct: 143 LLRAVESYLLAHSDA 157
>pdb|1FM4|A Chain A, Crystal Structure Of The Birch Pollen Allergen Bet V 1l
Length = 159
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 8/134 (5%)
Query: 30 IVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNP-QIVKELIEVVDNENYITIFKL 88
+V ++PQ++ S E IEG G PG + F G P + VK+ ++ VD+ N+ + +
Sbjct: 29 LVPKVAPQAISSVENIEGNGG-PGTIKKINFPE--GFPFKYVKDRVDEVDHTNFKYNYSV 85
Query: 89 IEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERK-NENVPDLESKV-LEMMINI 146
IEG + + + K+ D GG +++ + KY K N V + K EM +
Sbjct: 86 IEGGPVGDTLEKISNEIKIVATPD--GGCVLKISNKYHTKGNHEVKAEQVKASKEMGETL 143
Query: 147 VKNIDAYLIQHEEA 160
++ +++YL+ H +A
Sbjct: 144 LRAVESYLLAHSDA 157
>pdb|1QMR|A Chain A, Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E45s,
P108g
Length = 159
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 67/130 (51%), Gaps = 8/130 (6%)
Query: 34 ISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNP-QIVKELIEVVDNENYITIFKLIEGN 92
++PQ++ S E I G G PG + +F G P + VK+ ++ VD+ N+ + +IEG
Sbjct: 33 VAPQAISSVENISGNGG-PGTIKKISFPE--GLPFKYVKDRVDEVDHTNFKYNYSVIEGG 89
Query: 93 VLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLE--SKVLEMMINIVKNI 150
+ + + K+ D GGS+++ + KY K ++ E EM +++ +
Sbjct: 90 PIGDTLEKISNEIKIVATGD--GGSILKISNKYHTKGDHEVKAEQVKASKEMGETLLRAV 147
Query: 151 DAYLIQHEEA 160
++YL+ H +A
Sbjct: 148 ESYLLAHSDA 157
>pdb|1LLT|A Chain A, Birch Pollen Allergen Bet V 1 Mutant E45s
Length = 159
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 69/135 (51%), Gaps = 8/135 (5%)
Query: 29 HIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNP-QIVKELIEVVDNENYITIFK 87
++ ++PQ++ S E I G G PG + +F G P + VK+ ++ VD+ N+ +
Sbjct: 28 NLFPKVAPQAISSVENISGNGG-PGTIKKISFPE--GLPFKYVKDRVDEVDHTNFKYNYS 84
Query: 88 LIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLE--SKVLEMMIN 145
+IEG + + + K+ D GGS+++ + KY K ++ E EM
Sbjct: 85 VIEGGPIGDTLEKISNEIKIVATPD--GGSILKISNKYHTKGDHEVKAEQVKASKEMGET 142
Query: 146 IVKNIDAYLIQHEEA 160
+++ +++YL+ H +A
Sbjct: 143 LLRAVESYLLAHSDA 157
>pdb|4A8U|A Chain A, Crystal Structure Of Native Birch Pollen Allergen Bet V 1
Isoform J
pdb|4A8V|A Chain A, Crystal Structure Of Birch Pollen Allergen Bet V 1 Isoform
J In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
Length = 159
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 69/135 (51%), Gaps = 8/135 (5%)
Query: 29 HIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNP-QIVKELIEVVDNENYITIFK 87
++ ++PQ++ S E IEG G PG + +F G P + VK+ ++ VD+ N+ +
Sbjct: 28 NLFPKVAPQAISSVENIEGNGG-PGTIKKISFPE--GFPFKYVKDRVDEVDHTNFKYSYS 84
Query: 88 LIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLE--SKVLEMMIN 145
+IEG + + + K+ + GGS+++ KY K ++ E EM
Sbjct: 85 VIEGGPVGDTLEKISNEIKIVATPN--GGSILKINNKYHTKGDHEVKAEQIKASKEMGET 142
Query: 146 IVKNIDAYLIQHEEA 160
+++ +++YL+ H +A
Sbjct: 143 LLRAVESYLLAHSDA 157
>pdb|2K7H|A Chain A, Nmr Solution Structure Of Soybean Allergen Gly M 4
Length = 157
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 37 QSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYITIFKLIEGNVLEM 96
S +S E +EG G PG + TF G + V IE +D N + ++ G L
Sbjct: 35 DSFKSVENVEGNGG-PGTIKKITFLE-DGETKFVLHKIESIDEANLGYSYSVVGGAALPD 92
Query: 97 LYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDL-ESKVLEMMIN-IVKNIDAYL 154
+ +K+ + GGS + T KYE K + P+ E K + + + K I+AYL
Sbjct: 93 TAEKITFDSKLVAGPN--GGSAGKLTVKYETKGDAEPNQDELKTGKAKADALFKAIEAYL 150
Query: 155 IQHEE 159
+ H +
Sbjct: 151 LAHPD 155
>pdb|2QIM|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With Cytokinin
pdb|3E85|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With
Diphenylurea
Length = 158
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 6/141 (4%)
Query: 19 KVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVD 78
K+++ I+ + +++QS E++EG G PG + TF G + V IE +D
Sbjct: 18 KLYKALVTDADIIIPKAVETIQSVEIVEGNGG-PGTIKKLTFIE-GGESKYVLHKIEAID 75
Query: 79 NENYITIFKLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPD-LES 137
N + ++ G L + K+ + + GGS+ + T K E K + P+ E
Sbjct: 76 EANLGYNYSIVGGVGLPDTIEKISFETKLVEGAN--GGSIGKVTIKIETKGDAQPNEEEG 133
Query: 138 KVLEMMIN-IVKNIDAYLIQH 157
K + + K I++YL H
Sbjct: 134 KAAKARGDAFFKAIESYLSAH 154
>pdb|3RWS|A Chain A, Crystal Structure Of Medicago Truncatula Nodulin 13
(Mtn13) In Complex With Trans-Zeatin
Length = 168
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
Query: 36 PQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYITIFKLIEGNVL- 94
P+ ++ E +EG+ G PG + TF G+ K+ I++VD EN + + EG L
Sbjct: 41 PRFIEKAETLEGDGG-PGTIKKLTF---VGDFGSTKQHIDMVDRENCAYTYSVYEGIALS 96
Query: 95 -EMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLESKVLEMMI----NIVKN 149
+ L K + V ++ G +V+ T KY K +++ +L LE I K
Sbjct: 97 DQPLEKIVFEFKLVPTPEE---GCIVKSTTKYYTKGDDI-ELSKDYLEAGIERFEGFTKA 152
Query: 150 IDAYLIQHEEARAD 163
++++L+ + + D
Sbjct: 153 VESFLLANPDYNKD 166
>pdb|2OOD|A Chain A, Crystal Structure Of Guanine Deaminase From Bradyrhizobium
Japonicum
Length = 475
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 18 DKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNP-QIVKELIEV 76
DK +++ P SP+ +++C+ ++ E P CW T + NP + L+E
Sbjct: 195 DKGRNLYAITPRFAFGASPELLKACQRLKHE--HPD---CWVNTHISENPAECSGVLVEH 249
Query: 77 VDNENYITIFKLIE 90
D ++Y+ +++ +
Sbjct: 250 PDCQDYLGVYEKFD 263
>pdb|2VNE|A Chain A, The X-Ray Structure Of Norcoclaurine Synthase From
Thalictrum Flavum
pdb|2VNE|B Chain B, The X-Ray Structure Of Norcoclaurine Synthase From
Thalictrum Flavum
pdb|2VQ5|A Chain A, X-Ray Structure Of Norcoclaurine Synthase From Thalictrum
Flavum In Complex With Dopamine And Hydroxybenzaldehyde
pdb|2VQ5|B Chain B, X-Ray Structure Of Norcoclaurine Synthase From Thalictrum
Flavum In Complex With Dopamine And Hydroxybenzaldehyde
Length = 201
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 18/140 (12%)
Query: 11 IEVKASADKVHEVFSCRPHIVTSIS---PQSVQSCELIEGEWGRPGAVICWTFTRYAGNP 67
+EV ASAD + V+S P + + P + + E+I G+ G G ++ TF P
Sbjct: 35 LEVAASADDIWTVYSW-PGLAKHLPDLLPGAFEKLEII-GDGGV-GTILDXTFVP-GEFP 90
Query: 68 QIVKELIEVVDNENYITIFKLIEGNVLEMLYKSFYSVAKV--TQKDDHEGGSLVRFTYKY 125
KE +VDNE+ + + IEG L++ + V T KD +++ + +Y
Sbjct: 91 HEYKEKFILVDNEHRLKKVQXIEGGYLDLGVTYYXDTIHVVPTGKDS----CVIKSSTEY 146
Query: 126 ERKNENVPDLESKVLEMMIN 145
K E V K++E +I
Sbjct: 147 HVKPEFV-----KIVEPLIT 161
>pdb|3NJ1|A Chain A, X-Ray Crystal Structure Of The Pyl2(V114i)-Pyrabactin A
Complex
Length = 193
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 39 VQSCELIEGEWGRPGAVICWTFTRYAGNP-QIVKELIEVVDNENYITIFKLIEGNVLEML 97
V+ C LI G+ G G+V T +G P E +E VD+++ + F+++ G
Sbjct: 70 VKRCRLISGD-GDVGSV--REVTVISGLPASTSTERLEFVDDDHRVLSFRIVGGEHRLKN 126
Query: 98 YKSFYSVAKVTQKD 111
YKS SV + +D
Sbjct: 127 YKSVTSVNEFLNQD 140
>pdb|3NJ0|A Chain A, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|B Chain B, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|C Chain C, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
Length = 193
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 39 VQSCELIEGEWGRPGAVICWTFTRYAGNP-QIVKELIEVVDNENYITIFKLIEGNVLEML 97
V+ C LI G+ G G+V T +G P E +E VD+++ + F+++ G
Sbjct: 70 VKRCRLISGD-GDVGSV--REVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKN 126
Query: 98 YKSFYSVAKVTQKD 111
YKS SV + +D
Sbjct: 127 YKSVTSVNEFLNQD 140
>pdb|3KDH|A Chain A, Structure Of Ligand-Free Pyl2
pdb|3KDH|B Chain B, Structure Of Ligand-Free Pyl2
pdb|3KDH|C Chain C, Structure Of Ligand-Free Pyl2
pdb|3KDI|A Chain A, Structure Of (+)-Aba Bound Pyl2
pdb|3NR4|A Chain A, Pyrabactin-Bound Pyl2
pdb|3NR4|B Chain B, Pyrabactin-Bound Pyl2
pdb|3NR4|C Chain C, Pyrabactin-Bound Pyl2
pdb|3NS2|A Chain A, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|B Chain B, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|C Chain C, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3KL1|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
pdb|3KL1|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
Length = 190
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 39 VQSCELIEGEWGRPGAVICWTFTRYAGNP-QIVKELIEVVDNENYITIFKLIEGNVLEML 97
V+ C LI G+ G G+V T +G P E +E VD+++ + F+++ G
Sbjct: 67 VKRCRLISGD-GDVGSV--REVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKN 123
Query: 98 YKSFYSVAKVTQKD 111
YKS SV + +D
Sbjct: 124 YKSVTSVNEFLNQD 137
>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|B Chain B, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|C Chain C, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|D Chain D, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHW|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHY|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
Length = 472
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 119 VRFTYKYERKNENVPDLESKVLEMMINIVKNIDA--YLIQHEEARAD---DTDQVLLVNV 173
V F Y VP S+ L +NI++N +A + +EE+R + D D ++++
Sbjct: 9 VEFDYDGPLMKTEVPGPRSRELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDL 68
Query: 174 NSQ 176
SQ
Sbjct: 69 YSQ 71
>pdb|3NMH|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
Length = 178
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 39 VQSCELIEGEWGRPGAVICWTFTRYAGNP-QIVKELIEVVDNENYITIFKLIEGNVLEML 97
V+ C LI G+ G G+V T +G P E +E VD+++ + F+++ G
Sbjct: 56 VKRCRLISGD-GDVGSV--REVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKN 112
Query: 98 YKSFYSVAKVTQKD 111
YKS SV + +D
Sbjct: 113 YKSVTSVNEFLNQD 126
>pdb|3KAZ|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|C Chain C, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KB0|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2
pdb|3KB3|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 176
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 39 VQSCELIEGEWGRPGAVICWTFTRYAGNP-QIVKELIEVVDNENYITIFKLIEGNVLEML 97
V+ C LI G+ G G+V T +G P E +E VD+++ + F+++ G
Sbjct: 55 VKRCRLISGD-GDVGSV--REVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKN 111
Query: 98 YKSFYSVAKVTQKD 111
YKS SV + +D
Sbjct: 112 YKSVTSVNEFLNQD 125
>pdb|3UJL|A Chain A, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 177
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 39 VQSCELIEGEWGRPGAVICWTFTRYAGNP-QIVKELIEVVDNENYITIFKLIEGNVLEML 97
V+ C LI G+ G G+V T +G P E +E VD+++ + F+++ G
Sbjct: 56 VKRCRLISGD-GDVGSV--REVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKN 112
Query: 98 YKSFYSVAKVTQKD 111
YKS SV + +D
Sbjct: 113 YKSVTSVNEFLNQD 126
>pdb|3NMP|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMT|A Chain A, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
pdb|3NMV|A Chain A, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
Length = 178
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 39 VQSCELIEGEWGRPGAVICWTFTRYAGNP-QIVKELIEVVDNENYITIFKLIEGNVLEML 97
V+ C LI G+ G G+V T +G P E +E VD+++ + F+++ G
Sbjct: 56 VKRCRLISGD-GDVGSV--REVTVISGLPFSTSTERLEFVDDDHRVLSFRVVGGEHRLKN 112
Query: 98 YKSFYSVAKVTQKD 111
YKS SV + +D
Sbjct: 113 YKSVTSVNEFLNQD 126
>pdb|1CRU|A Chain A, Soluble Quinoprotein Glucose Dehydrogenase From
Acinetobacter Calcoaceticus In Complex With Pqq And
Methylhydrazine
pdb|1CRU|B Chain B, Soluble Quinoprotein Glucose Dehydrogenase From
Acinetobacter Calcoaceticus In Complex With Pqq And
Methylhydrazine
pdb|1QBI|A Chain A, Soluble Quinoprotein Glucose Dehydrogenase From
Acinetobacter Calcoaceticus
pdb|1QBI|B Chain B, Soluble Quinoprotein Glucose Dehydrogenase From
Acinetobacter Calcoaceticus
pdb|1C9U|A Chain A, Crystal Structure Of The Soluble Quinoprotein Glucose
Dehydrogenase In Complex With Pqq
pdb|1C9U|B Chain B, Crystal Structure Of The Soluble Quinoprotein Glucose
Dehydrogenase In Complex With Pqq
pdb|1CQ1|A Chain A, Soluble Quinoprotein Glucose Dehydrogenase From
Acinetobacter Calcoaceticus In Complex With Pqqh2 And
Glucose
pdb|1CQ1|B Chain B, Soluble Quinoprotein Glucose Dehydrogenase From
Acinetobacter Calcoaceticus In Complex With Pqqh2 And
Glucose
Length = 454
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 11/53 (20%)
Query: 79 NENYITIFKLIEGNVLEMLYKSFYSVAKVTQKDD-------HEGGSLVRFTYK 124
N Y + +GNVL +L + A QKDD GSL++FTYK
Sbjct: 404 NNRYRDVIASPDGNVLYVLTDT----AGNVQKDDGSVTNTLENPGSLIKFTYK 452
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,240,704
Number of Sequences: 62578
Number of extensions: 209213
Number of successful extensions: 764
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 747
Number of HSP's gapped (non-prelim): 36
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)