Query 048527
Match_columns 183
No_of_seqs 130 out of 822
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 10:18:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048527.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048527hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00407 Bet_v_1: Pathogenesis 100.0 1.3E-42 2.9E-47 271.0 18.8 151 2-157 1-151 (151)
2 cd07816 Bet_v1-like Ligand-bin 100.0 6.5E-36 1.4E-40 231.8 20.3 146 5-156 1-147 (148)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.7 7.4E-16 1.6E-20 114.6 16.8 136 6-154 2-139 (140)
4 PF10604 Polyketide_cyc2: Poly 99.6 7E-13 1.5E-17 98.5 19.2 107 5-127 2-108 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 99.5 1.7E-12 3.7E-17 98.0 16.2 133 7-153 1-141 (144)
6 cd07819 SRPBCC_2 Ligand-bindin 99.4 1.8E-11 3.8E-16 91.3 17.1 112 6-129 3-114 (140)
7 cd08865 SRPBCC_10 Ligand-bindi 99.4 1.1E-11 2.5E-16 91.7 16.0 108 7-127 1-108 (140)
8 cd08861 OtcD1_ARO-CYC_like N-t 99.4 4.8E-11 1E-15 89.9 14.5 113 7-130 1-113 (142)
9 cd07813 COQ10p_like Coenzyme Q 99.3 8E-11 1.7E-15 88.8 13.1 132 8-154 2-135 (138)
10 cd07822 SRPBCC_4 Ligand-bindin 99.2 1.8E-09 4E-14 80.0 17.2 111 7-128 2-112 (141)
11 cd07812 SRPBCC START/RHO_alpha 99.2 1.1E-09 2.3E-14 78.9 15.2 112 8-130 2-113 (141)
12 cd08862 SRPBCC_Smu440-like Lig 99.2 3E-09 6.5E-14 79.1 16.6 106 6-127 2-107 (138)
13 cd08860 TcmN_ARO-CYC_like N-te 99.2 2.5E-09 5.4E-14 82.8 16.0 113 5-130 1-115 (146)
14 cd07814 SRPBCC_CalC_Aha1-like 99.1 1.8E-09 3.9E-14 80.3 12.7 134 7-154 2-137 (139)
15 cd07820 SRPBCC_3 Ligand-bindin 99.1 3.5E-09 7.6E-14 80.1 13.2 110 7-128 1-112 (137)
16 cd05018 CoxG Carbon monoxide d 99.1 6.2E-09 1.3E-13 77.8 14.4 111 6-130 2-115 (144)
17 cd07825 SRPBCC_7 Ligand-bindin 99.1 7.6E-09 1.7E-13 78.0 14.7 137 7-154 2-143 (144)
18 cd07817 SRPBCC_8 Ligand-bindin 99.1 4.7E-09 1E-13 78.2 13.0 106 7-129 2-107 (139)
19 cd07824 SRPBCC_6 Ligand-bindin 99.1 2.2E-08 4.8E-13 76.5 17.0 110 7-129 3-113 (146)
20 cd07818 SRPBCC_1 Ligand-bindin 99.1 1.8E-08 3.8E-13 76.6 15.8 111 6-129 3-118 (150)
21 PF03364 Polyketide_cyc: Polyk 98.9 1.8E-07 4E-12 69.3 15.8 103 13-130 1-106 (130)
22 cd07823 SRPBCC_5 Ligand-bindin 98.8 1.8E-07 3.9E-12 71.4 14.4 113 8-130 2-116 (146)
23 PRK10724 hypothetical protein; 98.8 1.3E-07 2.8E-12 74.3 12.9 110 6-129 16-125 (158)
24 cd08898 SRPBCC_CalC_Aha1-like_ 98.5 4.2E-06 9.1E-11 62.8 12.3 137 6-155 2-144 (145)
25 cd08900 SRPBCC_CalC_Aha1-like_ 98.4 3.3E-05 7.1E-10 58.6 16.0 138 7-155 2-142 (143)
26 cd08899 SRPBCC_CalC_Aha1-like_ 98.4 1.1E-05 2.4E-10 62.5 12.6 129 5-158 11-139 (157)
27 cd08893 SRPBCC_CalC_Aha1-like_ 98.3 1.6E-05 3.5E-10 58.8 12.1 132 6-154 1-134 (136)
28 cd08895 SRPBCC_CalC_Aha1-like_ 98.3 6.4E-05 1.4E-09 57.3 15.4 138 6-155 1-145 (146)
29 COG3427 Carbon monoxide dehydr 98.3 2.4E-05 5.2E-10 60.8 12.5 135 7-155 3-144 (146)
30 PF06240 COXG: Carbon monoxide 98.3 9.5E-05 2.1E-09 56.4 15.3 107 10-130 2-111 (140)
31 cd07826 SRPBCC_CalC_Aha1-like_ 98.2 3.4E-05 7.3E-10 58.8 12.4 137 7-155 2-141 (142)
32 cd08894 SRPBCC_CalC_Aha1-like_ 98.2 3.3E-05 7.1E-10 58.4 12.1 132 7-155 2-138 (139)
33 cd08897 SRPBCC_CalC_Aha1-like_ 98.1 0.00023 5E-09 53.3 14.1 130 6-155 1-132 (133)
34 cd08896 SRPBCC_CalC_Aha1-like_ 98.1 0.00014 3.1E-09 55.3 12.4 139 7-155 2-145 (146)
35 cd08876 START_1 Uncharacterize 98.0 0.0012 2.5E-08 52.5 17.0 142 5-153 41-193 (195)
36 COG5637 Predicted integral mem 97.9 0.00011 2.4E-09 58.9 9.0 114 1-130 66-179 (217)
37 cd08891 SRPBCC_CalC Ligand-bin 97.8 0.0011 2.3E-08 50.6 13.4 134 7-154 2-147 (149)
38 COG3832 Uncharacterized conser 97.8 0.0011 2.4E-08 51.3 13.4 138 2-155 5-148 (149)
39 COG2867 Oligoketide cyclase/li 97.7 0.00034 7.4E-09 54.2 8.9 112 6-130 3-114 (146)
40 PF08327 AHSA1: Activator of H 97.5 0.0038 8.2E-08 45.2 12.5 120 14-154 1-123 (124)
41 cd08901 SRPBCC_CalC_Aha1-like_ 97.5 0.0015 3.2E-08 49.2 10.4 126 7-156 2-132 (136)
42 cd08892 SRPBCC_Aha1 Putative h 97.5 0.0057 1.2E-07 45.5 13.3 122 7-154 2-124 (126)
43 PTZ00220 Activator of HSP-90 A 96.5 0.023 4.9E-07 42.9 8.3 121 13-155 1-127 (132)
44 cd08905 START_STARD1-like Chol 96.0 0.63 1.4E-05 37.8 14.9 146 6-155 50-207 (209)
45 cd08874 START_STARD9-like C-te 95.9 0.73 1.6E-05 37.6 15.6 146 6-154 46-203 (205)
46 cd08863 SRPBCC_DUF1857 DUF1857 95.9 0.56 1.2E-05 36.3 14.8 118 8-148 3-129 (141)
47 PF08982 DUF1857: Domain of un 95.7 0.54 1.2E-05 36.6 12.9 99 7-128 2-108 (149)
48 cd08868 START_STARD1_3_like Ch 95.5 1 2.2E-05 36.3 16.9 145 7-155 50-206 (208)
49 cd08877 START_2 Uncharacterize 95.3 1.2 2.5E-05 36.1 14.1 142 5-155 46-213 (215)
50 cd08903 START_STARD5-like Lipi 95.2 1.4 2.9E-05 35.8 14.8 143 7-154 48-205 (208)
51 cd08873 START_STARD14_15-like 95.2 1.6 3.4E-05 36.6 17.5 147 6-157 78-235 (235)
52 cd08871 START_STARD10-like Lip 95.2 1.4 3E-05 35.9 16.3 152 7-164 49-210 (222)
53 cd00177 START Lipid-binding ST 93.8 2.4 5.2E-05 32.5 16.5 139 6-151 40-189 (193)
54 PF10698 DUF2505: Protein of u 93.6 2.7 5.8E-05 32.6 14.8 111 7-128 1-128 (159)
55 cd08906 START_STARD3-like Chol 92.4 5.2 0.00011 32.5 16.1 144 5-154 49-206 (209)
56 cd08913 START_STARD14-like Lip 92.2 6.1 0.00013 33.1 15.8 117 6-127 82-209 (240)
57 cd08870 START_STARD2_7-like Li 90.7 7.7 0.00017 31.3 16.7 146 6-155 51-207 (209)
58 cd08911 START_STARD7-like Lipi 90.3 8.5 0.00018 31.1 15.9 146 6-155 46-205 (207)
59 smart00234 START in StAR and p 88.6 10 0.00022 29.8 17.7 145 6-156 46-202 (206)
60 cd08867 START_STARD4_5_6-like 86.5 15 0.00033 29.3 15.9 144 6-154 47-205 (206)
61 COG4276 Uncharacterized conser 86.2 14 0.0003 28.7 15.4 140 5-154 2-146 (153)
62 cd08872 START_STARD11-like Cer 84.2 23 0.00049 29.4 13.2 142 6-157 53-227 (235)
63 cd08869 START_RhoGAP C-termina 84.0 20 0.00044 28.6 16.4 121 6-134 45-173 (197)
64 PF05952 ComX: Bacillus compet 77.9 0.56 1.2E-05 30.8 -0.5 33 147-179 2-35 (57)
65 cd08914 START_STARD15-like Lip 74.2 51 0.0011 27.6 15.7 116 5-127 78-205 (236)
66 cd08910 START_STARD2-like Lipi 70.9 54 0.0012 26.4 13.5 142 6-155 50-205 (207)
67 PF01852 START: START domain; 66.5 60 0.0013 25.3 17.4 144 6-158 47-204 (206)
68 PF11485 DUF3211: Protein of u 64.4 23 0.00051 27.2 5.6 41 6-48 2-42 (136)
69 cd08908 START_STARD12-like C-t 37.3 2.3E+02 0.0049 23.1 14.3 119 5-130 52-177 (204)
70 PF11979 DUF3480: Domain of un 35.4 1.9E+02 0.004 25.9 7.3 88 88-179 238-330 (356)
71 KOG3177 Oligoketide cyclase/li 30.6 3.1E+02 0.0068 22.8 7.3 110 10-129 73-182 (227)
72 cd00222 CollagenBindB Collagen 30.6 87 0.0019 25.3 4.1 73 13-94 3-75 (187)
73 PF11687 DUF3284: Domain of un 28.6 2.4E+02 0.0052 20.7 8.5 98 9-128 3-103 (120)
74 PF00028 Cadherin: Cadherin do 27.9 1.7E+02 0.0037 19.5 4.8 23 70-92 14-39 (93)
75 cd08904 START_STARD6-like Lipi 24.6 3.8E+02 0.0082 21.7 14.9 123 6-134 47-181 (204)
76 PF07474 G2F: G2F domain; Int 22.7 1.8E+02 0.0038 23.7 4.6 49 57-107 93-147 (192)
77 PF08473 VGCC_alpha2: Neuronal 21.8 1.9E+02 0.0041 20.8 4.0 17 77-93 39-55 (94)
78 TIGR03505 FimV_core FimV N-ter 21.7 62 0.0013 22.1 1.5 21 144-164 16-36 (74)
79 COG4933 Uncharacterized conser 21.0 1.3E+02 0.0027 22.8 3.1 28 1-28 43-70 (124)
No 1
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=100.00 E-value=1.3e-42 Score=270.95 Aligned_cols=151 Identities=40% Similarity=0.682 Sum_probs=138.4
Q ss_pred CcceEEEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCC
Q 048527 2 SLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNEN 81 (183)
Q Consensus 2 ~~~~~v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~ 81 (183)
|++++++.|+++++||+|+|+++++.++++|+++|+.|++++++|||||..||||.|+|. ++++..++||||+.+|+++
T Consensus 1 m~~~~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~-~~~~~~~~Kekve~~D~~~ 79 (151)
T PF00407_consen 1 MGVGKLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFG-PGGPFKYVKEKVEAIDEEN 79 (151)
T ss_dssp SCEEEEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEE-TTSSEEEEEEEEEEEETTT
T ss_pred CCcEEEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEec-CCCCcceeEEEEEeecCCC
Confidence 467899999999999999999999877799999999999999999995444599999999 8998899999999999999
Q ss_pred cEEEEEEEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHhhC
Q 048527 82 YITIFKLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLESKVLEMMINIVKNIDAYLIQH 157 (183)
Q Consensus 82 ~~~~Y~iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~~~~~~~~~~~k~ie~yLl~~ 157 (183)
++++|+++|||++. .|++|..++++.|+ + +|+|+++|+++|++++++.|+|+. +++++..|+|+||+||++|
T Consensus 80 ~~~~y~viEGd~l~-~~~~~~~~~~~~~~-~-~g~~v~k~t~~Ye~~~~~~~~p~~-~~~~~~~~~K~ieayLlan 151 (151)
T PF00407_consen 80 KTITYTVIEGDVLG-DYKSFKSTIQKIPK-G-DGGCVVKWTIEYEKKGEDVPPPEK-YLDFAVGMFKAIEAYLLAN 151 (151)
T ss_dssp TEEEEEEEEETTGT-TTEEEEEEEEEEEE-T-TSCEEEEEEEEEEESSTSCHHHHH-HHHHHHHHHHHHHHHHHHT
T ss_pred cEEEEEEEeccccc-cEEEEEEEEEecCC-C-CCceEEEEEEEEEecCCCCCCcHH-HHHHHHHHHHHHHHHHhcC
Confidence 99999999999998 79999999999987 4 777999999999999988877776 8999999999999999997
No 2
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=100.00 E-value=6.5e-36 Score=231.75 Aligned_cols=146 Identities=34% Similarity=0.545 Sum_probs=132.0
Q ss_pred eEEEEEEEEcCCHHHHHHHHhcCCccc-ccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCCcE
Q 048527 5 GELEAVIEVKASADKVHEVFSCRPHIV-TSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYI 83 (183)
Q Consensus 5 ~~v~~ev~i~apadkvW~~~~d~~~~l-pk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~ 83 (183)
|+++.+++|+|||++||++++||.+.+ +.|+| .|++|++++|+ |++||||.|+|. .+++..++||||+++|+++|+
T Consensus 1 ~~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p-~v~~~~~~eG~-~~~GsvR~~~~~-~~~~~~~~kE~l~~~D~~~~~ 77 (148)
T cd07816 1 GTLEHEVELKVPAEKLWKAFVLDSHLLPPKLPP-VIKSVELLEGD-GGPGSIKLITFG-PGGKVKYVKERIDAVDEENKT 77 (148)
T ss_pred CcEEEEEEecCCHHHHHHHHhcChhhccccccc-cccEEEEEecC-CCCceEEEEEEc-CCCcceEEEEEEEEEcccccE
Confidence 578999999999999999999997544 55666 89999999999 899999999999 777678999999999999999
Q ss_pred EEEEEEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHhh
Q 048527 84 TIFKLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLESKVLEMMINIVKNIDAYLIQ 156 (183)
Q Consensus 84 ~~Y~iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~~~~~~~~~~~k~ie~yLl~ 156 (183)
++|++++|+++.++|++|.++++|.|. + +++|+++|+++|++.+++.++|.. +++.+..+++++++|++.
T Consensus 78 ~~y~vveg~~~~~~~~~y~~t~~v~~~-~-~~~t~v~Wt~~ye~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~ 147 (148)
T cd07816 78 YKYTVIEGDVLKDGYKSYKVEIKFVPK-G-DGGCVVKWTIEYEKKGDAEPPEEE-IKAGKEKALKMFKAVEAY 147 (148)
T ss_pred EEEEEEecccccCceEEEEEEEEEEEC-C-CCCEEEEEEEEEEECCCCCCCHHH-HHhHHHHHHHHHHHHHhc
Confidence 999999999875579999999999997 4 778999999999999988777776 888999999999999875
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.72 E-value=7.4e-16 Score=114.59 Aligned_cols=136 Identities=24% Similarity=0.339 Sum_probs=109.2
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCCcEEE
Q 048527 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYITI 85 (183)
Q Consensus 6 ~v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~~~ 85 (183)
.++.+++|++|+++||+++.|+. .+++|+|. ++++++++++ .++|+++.+.+. .+ ..+++++..+|+.+++++
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~-~~~~w~~~-~~~~~~~~~~-~~~g~~~~~~~~-~g---~~~~~~i~~~~~~~~~i~ 74 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFG-GLHKWHPA-VASCELEGGG-PGVGAVRTVTLK-DG---GTVRERLLALDDAERRYS 74 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcC-chhhhccC-cceEEeecCC-CCCCeEEEEEeC-CC---CEEEEEehhcCccCCEEE
Confidence 57889999999999999999985 47999995 8889988776 368999999987 34 478999999999888999
Q ss_pred EEEEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHH
Q 048527 86 FKLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLES-K-VLEMMINIVKNIDAYL 154 (183)
Q Consensus 86 Y~iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~-~-~~~~~~~~~k~ie~yL 154 (183)
|++.+|+. ++.++.+++++.|. + +++|.|+|+..|++.+. .+.+.. . ..+.....++.|.++|
T Consensus 75 ~~~~~~~~---~~~~~~~~~~~~~~-~-~~~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 75 YRIVEGPL---PVKNYVATIRVTPE-G-DGGTRVTWTAEFDPPEG-LTDELARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred EEecCCCC---CcccceEEEEEEEC-C-CCccEEEEEEEEecCCC-cchHHHHHHHHHHHHHHHHHHHHhh
Confidence 99998854 67889999999997 3 55899999999999865 334432 2 4555566666666665
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.58 E-value=7e-13 Score=98.50 Aligned_cols=107 Identities=22% Similarity=0.270 Sum_probs=87.9
Q ss_pred eEEEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCCcEE
Q 048527 5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYIT 84 (183)
Q Consensus 5 ~~v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~~ 84 (183)
.+++.++.|++||++||+++.|+.+ +++|+| .+.++++.+|+ ++|..+.+... + + ..+++++..+|++.+.+
T Consensus 2 ~~~~~~~~v~a~~e~V~~~l~d~~~-~~~w~~-~~~~~~~~~~~--~~~~~~~~~~~--g-~-~~~~~~i~~~~~~~~~~ 73 (139)
T PF10604_consen 2 FKVEVSIEVPAPPEAVWDLLSDPEN-WPRWWP-GVKSVELLSGG--GPGTERTVRVA--G-R-GTVREEITEYDPEPRRI 73 (139)
T ss_dssp EEEEEEEEESS-HHHHHHHHTTTTG-GGGTST-TEEEEEEEEEC--STEEEEEEEEC--S-C-SEEEEEEEEEETTTTEE
T ss_pred EEEEEEEEECCCHHHHHHHHhChhh-hhhhhh-ceEEEEEcccc--ccceeEEEEec--c-c-cceeEEEEEecCCCcEE
Confidence 4789999999999999999999854 799999 58899988743 45666666654 3 2 48999999999889999
Q ss_pred EEEEEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEe
Q 048527 85 IFKLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYER 127 (183)
Q Consensus 85 ~Y~iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~ 127 (183)
.|++. .. ++..+..++++.|. ++||.|+|+.+|+.
T Consensus 74 ~~~~~-~~----~~~~~~~~~~~~~~---~~gt~v~~~~~~~~ 108 (139)
T PF10604_consen 74 TWRFV-PS----GFTNGTGRWRFEPV---GDGTRVTWTVEFEP 108 (139)
T ss_dssp EEEEE-SS----SSCEEEEEEEEEEE---TTTEEEEEEEEEEE
T ss_pred EEEEE-ec----ceeEEEEEEEEEEc---CCCEEEEEEEEEEE
Confidence 99996 21 56788999999997 45699999999998
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.51 E-value=1.7e-12 Score=98.05 Aligned_cols=133 Identities=17% Similarity=0.219 Sum_probs=91.2
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCC-----ccEEEEEEeecCCCceEEEEEEEEeeCCC
Q 048527 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRP-----GAVICWTFTRYAGNPQIVKELIEVVDNEN 81 (183)
Q Consensus 7 v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~-----GsvR~~t~~~~~g~~~~~kErl~~iD~~~ 81 (183)
++.++.|++|+++||+++.|+.+ +|+|+|+ +++++++++.+++. |..+.+... -. ..+..++.+.++..
T Consensus 1 ~~~~~~i~a~~~~Vw~~l~D~~~-~~~w~p~-v~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~---~~v~~~~~~~~~~~ 74 (144)
T cd08866 1 VVARVRVPAPPETVWAVLTDYDN-LAEFIPN-LAESRLLERNGNRVVLEQTGKQGILFFK-FE---ARVVLELREREEFP 74 (144)
T ss_pred CeEEEEECCCHHHHHHHHhChhh-HHhhCcC-ceEEEEEEcCCCEEEEEEeeeEEEEeee-ee---EEEEEEEEEecCCC
Confidence 35789999999999999999965 7999995 88999887652111 111111111 01 24556677777778
Q ss_pred cEEEEEEEecccceeeeEEEEEEEEEEeeeCCC-CceEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHH
Q 048527 82 YITIFKLIEGNVLEMLYKSFYSVAKVTQKDDHE-GGSLVRFTYKYERKNENVPDLES-K-VLEMMINIVKNIDAY 153 (183)
Q Consensus 82 ~~~~Y~iieG~~l~~~~~sy~~ti~v~p~~~~~-~gs~v~Wt~~ye~~~~~~p~~~~-~-~~~~~~~~~k~ie~y 153 (183)
+.+.|++++|+ +.+|.+++++.|. + + ++|.++|.+.|++.. ..|.+-. . ..+.+..+++.|.+.
T Consensus 75 ~~i~~~~~~g~-----~~~~~g~w~~~~~-~-~~~~t~v~~~~~~~~~~-~~p~~l~~~~~~~~~~~~l~~lr~~ 141 (144)
T cd08866 75 RELDFEMVEGD-----FKRFEGSWRLEPL-A-DGGGTLLTYEVEVKPDF-FAPVFLVEFVLRQDLPTNLLAIRAE 141 (144)
T ss_pred ceEEEEEcCCc-----hhceEEEEEEEEC-C-CCCeEEEEEEEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999875 5689999999997 3 4 689999999999975 3333322 1 333445555555443
No 6
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.44 E-value=1.8e-11 Score=91.33 Aligned_cols=112 Identities=19% Similarity=0.154 Sum_probs=80.6
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCCcEEE
Q 048527 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYITI 85 (183)
Q Consensus 6 ~v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~~~ 85 (183)
+++.++.|++|+++||+++.|+. .+|+|+|. +.++++++++.++.+....+++. ..+-.....-+++ .++ .++++
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~D~~-~~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~-~~~i~ 77 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLADVE-AYPEWSPK-VKSVEVLLRDNDGRPEMVRIGVG-AYGIKDTYALEYT-WDG-AGSVS 77 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHhChh-hhhhhCcc-eEEEEEeccCCCCCEEEEEEEEe-eeeEEEEEEEEEE-EcC-CCcEE
Confidence 68899999999999999999985 48999995 88899876542333333344554 2221111222222 223 67899
Q ss_pred EEEEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecC
Q 048527 86 FKLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKN 129 (183)
Q Consensus 86 Y~iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~ 129 (183)
|+..+|. +..++..++++.|. ++||.|+|+.+++..+
T Consensus 78 ~~~~~~~----~~~~~~~~~~~~~~---~~~t~vt~~~~~~~~~ 114 (140)
T cd07819 78 WTLVEGE----GNRSQEGSYTLTPK---GDGTRVTFDLTVELTV 114 (140)
T ss_pred EEEeccc----ceeEEEEEEEEEEC---CCCEEEEEEEEEEecC
Confidence 9998876 46788899999997 4589999999999865
No 7
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.44 E-value=1.1e-11 Score=91.70 Aligned_cols=108 Identities=17% Similarity=0.172 Sum_probs=84.8
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCCcEEEE
Q 048527 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYITIF 86 (183)
Q Consensus 7 v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~~~Y 86 (183)
++.++.|++|+++||+++.|+.+ +|+|.|. +.+++.+.++..++|+...+... .+|....+++++..+| .++.+.|
T Consensus 1 ~~~~~~i~ap~~~Vw~~l~d~~~-~~~w~~~-~~~~~~~~~~~~~~g~~~~~~~~-~~g~~~~~~~~v~~~~-p~~~~~~ 76 (140)
T cd08865 1 VEESIVIERPVEEVFAYLADFEN-APEWDPG-VVEVEKITDGPVGVGTRYHQVRK-FLGRRIELTYEITEYE-PGRRVVF 76 (140)
T ss_pred CceEEEEcCCHHHHHHHHHCccc-hhhhccC-ceEEEEcCCCCCcCccEEEEEEE-ecCceEEEEEEEEEec-CCcEEEE
Confidence 46789999999999999999864 7999995 67788765543468999888766 3443346789999888 4578899
Q ss_pred EEEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEe
Q 048527 87 KLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYER 127 (183)
Q Consensus 87 ~iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~ 127 (183)
....|++ .+..++++.|. +++|.++|+.+|+.
T Consensus 77 ~~~~~~~------~~~~~~~~~~~---~~~t~v~~~~~~~~ 108 (140)
T cd08865 77 RGSSGPF------PYEDTYTFEPV---GGGTRVRYTAELEP 108 (140)
T ss_pred EecCCCc------ceEEEEEEEEc---CCceEEEEEEEEcc
Confidence 8876532 36789999986 55799999999987
No 8
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.35 E-value=4.8e-11 Score=89.87 Aligned_cols=113 Identities=18% Similarity=0.227 Sum_probs=82.4
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCCcEEEE
Q 048527 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYITIF 86 (183)
Q Consensus 7 v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~~~Y 86 (183)
++.+++|++|+++||+++.|+.+ +|+|+|. .+++.++++ +....++.+... .+|..... +....+|++.+++.|
T Consensus 1 ~~~s~~i~ap~~~V~~~l~D~~~-~p~~~p~--~~~~~~~~~-~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~i~~ 74 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLADAER-WPEFLPT--VHVERLELD-GGVERLRMWATA-FDGSVHTW-TSRRVLDPEGRRIVF 74 (142)
T ss_pred CeEEEEEcCCHHHHHHHHHhHHh-hhccCCC--ceEEEEEEc-CCEEEEEEEEEc-CCCcEEEE-EEEEEEcCCCCEEEE
Confidence 36899999999999999999965 7999996 455555543 222245555554 33322222 344567888999999
Q ss_pred EEEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCC
Q 048527 87 KLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNE 130 (183)
Q Consensus 87 ~iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~ 130 (183)
..+++.. .+..+.+++++.|. + +++|.|+|+.+|+....
T Consensus 75 ~~~~~~~---~~~~~~g~w~~~~~-~-~~~t~Vt~~~~~~~~~~ 113 (142)
T cd08861 75 RQEEPPP---PVASMSGEWRFEPL-G-GGGTRVTLRHDFTLGID 113 (142)
T ss_pred EEeeCCC---ChhhheeEEEEEEC-C-CCcEEEEEEEEEEECCC
Confidence 9987543 56788999999997 2 47899999999998853
No 9
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.30 E-value=8e-11 Score=88.76 Aligned_cols=132 Identities=13% Similarity=0.133 Sum_probs=93.1
Q ss_pred EEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCCcEEEEE
Q 048527 8 EAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYITIFK 87 (183)
Q Consensus 8 ~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~~~Y~ 87 (183)
+.+++|++|++.||+++.|+. .+|+|+|+ +.++++++++ + .+....+++. ..+....+..++. +++ .+++++.
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~~-~~~~~~p~-~~~~~vl~~~-~-~~~~~~~~~~-~~~~~~~~~~~~~-~~~-~~~i~~~ 74 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADVE-RYPEFLPW-CTASRVLERD-E-DELEAELTVG-FGGIRESFTSRVT-LVP-PESIEAE 74 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHHH-hhhhhcCC-ccccEEEEcC-C-CEEEEEEEEe-eccccEEEEEEEE-ecC-CCEEEEE
Confidence 578999999999999999985 48999995 8999999876 3 4445556665 3443334555554 665 6688999
Q ss_pred EEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHH
Q 048527 88 LIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLES-K-VLEMMINIVKNIDAYL 154 (183)
Q Consensus 88 iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~-~-~~~~~~~~~k~ie~yL 154 (183)
.++|+ ++.+.+++++.|. + +++|.|+|...|++.+. .|..-. . ..+....+++.+.+-+
T Consensus 75 ~~~g~-----~~~~~g~w~~~p~-~-~~~T~v~~~~~~~~~~~-l~~~l~~~~~~~~~~~~l~~f~~~~ 135 (138)
T cd07813 75 LVDGP-----FKHLEGEWRFKPL-G-ENACKVEFDLEFEFKSR-LLEALAGLVFDEVAKKMVDAFEKRA 135 (138)
T ss_pred ecCCC-----hhhceeEEEEEEC-C-CCCEEEEEEEEEEECCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88884 5678899999997 3 67899999999999853 222211 1 3444455555554433
No 10
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.23 E-value=1.8e-09 Score=80.01 Aligned_cols=111 Identities=17% Similarity=0.124 Sum_probs=81.4
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCCcEEEE
Q 048527 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYITIF 86 (183)
Q Consensus 7 v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~~~Y 86 (183)
++.++.|++|+++||+++.|+. .+|+|+|. +..++... .++|+...+.+...++....+.+++.++|+. +++.|
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~~-~~~~w~~~-~~~~~~~~---~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p~-~~~~~ 75 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDFP-SYPEWNPF-VRSATGLS---LALGARLRFVVKLPGGPPRSFKPRVTEVEPP-RRLAW 75 (141)
T ss_pred eEEEEEecCCHHHHHHHHhccc-cccccChh-heeEeccc---cCCCCEEEEEEeCCCCCcEEEEEEEEEEcCC-CEeEE
Confidence 6789999999999999999985 57999985 55555431 2567777777761222335678889999874 68899
Q ss_pred EEEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEec
Q 048527 87 KLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERK 128 (183)
Q Consensus 87 ~iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~ 128 (183)
+...++. .......++++.|. + +++|.++|+..|...
T Consensus 76 ~~~~~~~---~~~~~~~~~~~~~~-~-~~~T~~~~~~~~~g~ 112 (141)
T cd07822 76 RGGLPFP---GLLDGEHSFELEPL-G-DGGTRFVHRETFSGL 112 (141)
T ss_pred EecCCCC---cEeeEEEEEEEEEc-C-CCcEEEEEeeEEEEE
Confidence 9877653 22356678889886 3 678999999877643
No 11
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.23 E-value=1.1e-09 Score=78.92 Aligned_cols=112 Identities=21% Similarity=0.254 Sum_probs=86.0
Q ss_pred EEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCCcEEEEE
Q 048527 8 EAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYITIFK 87 (183)
Q Consensus 8 ~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~~~Y~ 87 (183)
+.++.|++|+++||+++.|+. .+++|+|+ +.++++.++.....|....+.+. ++.....+.++..+++ +..++|+
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~-~~~~~~~ 76 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPE-RWPEWSPG-LERVEVLGGGEGGVGARFVGGRK--GGRRLTLTSEVTEVDP-PRPGRFR 76 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChh-hhhhhCcc-cceEEEcCCCCccceeEEEEEec--CCccccceEEEEEecC-CCceEEE
Confidence 578999999999999999985 57999996 78888876653456666655553 2222467888888877 6788999
Q ss_pred EEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCC
Q 048527 88 LIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNE 130 (183)
Q Consensus 88 iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~ 130 (183)
+..++.. ..+..++++.+. + +++|.++|+..+.....
T Consensus 77 ~~~~~~~----~~~~~~~~~~~~-~-~~~t~v~~~~~~~~~~~ 113 (141)
T cd07812 77 VTGGGGG----VDGTGEWRLEPE-G-DGGTRVTYTVEYDPPGP 113 (141)
T ss_pred EecCCCC----cceeEEEEEEEC-C-CCcEEEEEEEEEecCCc
Confidence 9877652 578889999986 2 33899999999998764
No 12
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.19 E-value=3e-09 Score=79.15 Aligned_cols=106 Identities=14% Similarity=0.044 Sum_probs=78.2
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCCcEEE
Q 048527 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYITI 85 (183)
Q Consensus 6 ~v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~~~ 85 (183)
+++.++.|+||+++||+++.|+. .+|+|+|+ +.++++..+. .++|+...++.. ++ ..+..+|.++++. ++++
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~-~~~~w~~~-~~~~~~~~~~-~~~G~~~~~~~~--~~--~~~~~~i~~~~p~-~~~~ 73 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVE-NWPAWTPS-VETVRLEGPP-PAVGSSFKMKPP--GL--VRSTFTVTELRPG-HSFT 73 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhh-hcccccCc-ceEEEEecCC-CCCCcEEEEecC--CC--CceEEEEEEecCC-CEEE
Confidence 57899999999999999999985 47999995 8889887553 267776655543 22 3567888888865 4677
Q ss_pred EEEEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEe
Q 048527 86 FKLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYER 127 (183)
Q Consensus 86 Y~iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~ 127 (183)
++... + ...+..++++.|. + +++|.++|+.+|..
T Consensus 74 ~~~~~-~-----~~~~~~~~~~~~~-~-~~~t~l~~~~~~~~ 107 (138)
T cd08862 74 WTGPA-P-----GISAVHRHEFEAK-P-DGGVRVTTSESLSG 107 (138)
T ss_pred EEecC-C-----CEEEEEEEEEEEc-C-CCcEEEEEEEEeec
Confidence 77543 2 2344578888886 2 47899999988874
No 13
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.18 E-value=2.5e-09 Score=82.75 Aligned_cols=113 Identities=16% Similarity=0.144 Sum_probs=81.1
Q ss_pred eEEEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCc-eEEEEEEEEeeCCCcE
Q 048527 5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNP-QIVKELIEVVDNENYI 83 (183)
Q Consensus 5 ~~v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~-~~~kErl~~iD~~~~~ 83 (183)
|..+++|+|++||++||+++.|..+ .|.|+|. +++++++++++.+.|+--++.+. .+|.. .+..++. .|...++
T Consensus 1 ~~~~~si~i~a~~~~v~~lvaDv~~-~P~~~~~-~~~~~~l~~~~~~~~~r~~i~~~-~~g~~~~w~s~~~--~~~~~~~ 75 (146)
T cd08860 1 GRTDNSIVIDAPLDLVWDMTNDIAT-WPDLFSE-YAEAEVLEEDGDTVRFRLTMHPD-ANGTVWSWVSERT--LDPVNRT 75 (146)
T ss_pred CcceeEEEEcCCHHHHHHHHHhhhh-hhhhccc-eEEEEEEEecCCeEEEEEEEEec-cCCEEEEEEEEEE--ecCCCcE
Confidence 3568999999999999999999865 7999995 88899887653455532222333 23322 2323432 6888888
Q ss_pred EEEE-EEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCC
Q 048527 84 TIFK-LIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNE 130 (183)
Q Consensus 84 ~~Y~-iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~ 130 (183)
+.+. ...| |+.+....++++|. ++||.|++..+|+-.++
T Consensus 76 i~~~~~~~~-----p~~~m~~~W~f~~~---~~gT~V~~~~~~~~~~~ 115 (146)
T cd08860 76 VRARRVETG-----PFAYMNIRWEYTEV---PEGTRMRWVQDFEMKPG 115 (146)
T ss_pred EEEEEecCC-----CcceeeeeEEEEEC---CCCEEEEEEEEEEECCC
Confidence 8874 2222 57889999999997 44699999999997754
No 14
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.13 E-value=1.8e-09 Score=80.28 Aligned_cols=134 Identities=13% Similarity=0.100 Sum_probs=87.7
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCCcEEEE
Q 048527 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYITIF 86 (183)
Q Consensus 7 v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~~~Y 86 (183)
++.+++|+||+++||+++.|+. .+|+|+|. +..++..... | |+.+..... .+|....+..++..+|+. +.+.|
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~-~~~~w~~~-~~~~~~~~~~-G--g~~~~~~~~-~~g~~~~~~~~i~~~~~~-~~i~~ 74 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPE-LLAQWFGP-TTTAEMDLRV-G--GRWFFFMTG-PDGEEGWVSGEVLEVEPP-RRLVF 74 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHH-HHHhhhCc-CCceEEcccC-C--ceEEEEEEC-CCCCEEeccEEEEEEcCC-CeEEE
Confidence 6789999999999999999984 57999995 2222211111 1 666655444 333335678899999865 67999
Q ss_pred EEEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHH
Q 048527 87 KLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLES-K-VLEMMINIVKNIDAYL 154 (183)
Q Consensus 87 ~iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~-~-~~~~~~~~~k~ie~yL 154 (183)
+...++. . +.-....++++.|. +++|.++|+.+|..... +.+.. . .+.....++..|.+||
T Consensus 75 ~~~~~~~-~-~~~~~~~~~~~~~~---~~~T~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~lk~~~ 137 (139)
T cd07814 75 TWAFSDE-T-PGPETTVTVTLEET---GGGTRLTLTHSGFPEED--AEQEAREGMEEGWTGTLDRLKALL 137 (139)
T ss_pred EecccCC-C-CCCceEEEEEEEEC---CCCEEEEEEEEccChHh--HHHHHHhCHhhHHHHHHHHHHHHh
Confidence 9887653 1 23456778888886 56799999999987632 11111 1 3444445555555544
No 15
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.10 E-value=3.5e-09 Score=80.05 Aligned_cols=110 Identities=18% Similarity=0.240 Sum_probs=82.5
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCC--CCccEEEEEEeecCCCceEEEEEEEEeeCCCcEE
Q 048527 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWG--RPGAVICWTFTRYAGNPQIVKELIEVVDNENYIT 84 (183)
Q Consensus 7 v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g--~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~~ 84 (183)
++.+++|++|+++||+.+.|.. .+|+|+|+ +.++++++.+.| .+|+.-.+.+. ..+..-..+-+++.++ .++.+
T Consensus 1 ~~~s~~I~ap~e~V~~~~~d~~-~~~~~~p~-~~~v~~~~~~~~~~~~G~~~~~~~~-~~~~~~~w~~~it~~~-p~~~f 76 (137)
T cd07820 1 LERSTVIPAPIEEVFDFHSRPD-NLERLTPP-WLEFAVLGRTPGLIYGGARVTYRLR-HFGIPQRWTTEITEVE-PPRRF 76 (137)
T ss_pred CeEEEEcCCCHHHHHHHHcCcc-hHHhcCCC-CCCeEEEecCCCcccCCcEEEEEEE-ecCCceEEEEEEEEEc-CCCeE
Confidence 4678999999999999999985 48999996 778888743312 46788888877 4442335566677665 45568
Q ss_pred EEEEEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEec
Q 048527 85 IFKLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERK 128 (183)
Q Consensus 85 ~Y~iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~ 128 (183)
++..+.|. +..+..+..+.|. ++||.++++++|+..
T Consensus 77 ~~~~~~G~-----~~~w~h~~~f~~~---~~gT~vt~~v~~~~p 112 (137)
T cd07820 77 VDEQVSGP-----FRSWRHTHRFEAI---GGGTLMTDRVEYRLP 112 (137)
T ss_pred EEEeccCC-----chhCEEEEEEEEC---CCceEEEEEEEEeCC
Confidence 88887764 4567778888886 457999999999973
No 16
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.09 E-value=6.2e-09 Score=77.84 Aligned_cols=111 Identities=11% Similarity=0.051 Sum_probs=75.5
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCc---eEEEEEEEEeeCCCc
Q 048527 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNP---QIVKELIEVVDNENY 82 (183)
Q Consensus 6 ~v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~---~~~kErl~~iD~~~~ 82 (183)
+++.++.+++|+++||+++.|.. .+++|+|+ +.+++.++++ ... -.+++. . ++. -..+-++..+|+. +
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~D~~-~~~~w~p~-~~~~~~~~~~--~~~--~~~~~~-~-~~~~~~~~~~~~~~~~~~~-~ 72 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALNDPE-VLARCIPG-CESLEKIGPN--EYE--ATVKLK-V-GPVKGTFKGKVELSDLDPP-E 72 (144)
T ss_pred eeeeEEEecCCHHHHHHHhcCHH-HHHhhccc-hhhccccCCC--eEE--EEEEEE-E-ccEEEEEEEEEEEEecCCC-c
Confidence 46789999999999999999984 58999995 7777776543 111 122222 1 211 1224556655544 5
Q ss_pred EEEEEEEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCC
Q 048527 83 ITIFKLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNE 130 (183)
Q Consensus 83 ~~~Y~iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~ 130 (183)
++.++....+. . ....+..++++.|. ++||.++|+++|+..+.
T Consensus 73 ~~~~~~~~~~~-~-~~~~~~~~~~l~~~---~~gT~v~~~~~~~~~g~ 115 (144)
T cd05018 73 SYTITGEGKGG-A-GFVKGTARVTLEPD---GGGTRLTYTADAQVGGK 115 (144)
T ss_pred EEEEEEEEcCC-C-ceEEEEEEEEEEec---CCcEEEEEEEEEEEccC
Confidence 67777653222 1 35689999999996 66899999999997753
No 17
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.09 E-value=7.6e-09 Score=77.97 Aligned_cols=137 Identities=13% Similarity=0.112 Sum_probs=89.2
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCC-CCCccEEEEEEeecCCCceEEEEEEEEeeCCCcEEE
Q 048527 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEW-GRPGAVICWTFTRYAGNPQIVKELIEVVDNENYITI 85 (183)
Q Consensus 7 v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~-g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~~~ 85 (183)
++.++.|+|||++||+++.|+. .+|+|.|..... ....++. -++|+...+... ..|....+..++..+++.. +++
T Consensus 2 i~~~~~i~ap~e~Vw~~l~d~~-~~~~W~~~~~~~-~~~~~~~~~~~G~~~~~~~~-~~g~~~~~~~~v~~~~p~~-~l~ 77 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLADPR-RHPEIDGSGTVR-EAIDGPRILAVGDVFRMAMR-LDGGPYRITNHVVAFEENR-LIA 77 (144)
T ss_pred eEEEEEEeCCHHHHHHHHhCcc-ccceeCCCCccc-cccCCCccCCCCCEEEEEEE-cCCCceEEEEEEEEECCCC-EEE
Confidence 6789999999999999999985 579999853322 2223331 378888888776 3333345667788877655 588
Q ss_pred EEEE-ecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCC--CCC-chHHHHHHHHHHHHHHHHHH
Q 048527 86 FKLI-EGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNEN--VPD-LESKVLEMMINIVKNIDAYL 154 (183)
Q Consensus 86 Y~ii-eG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~--~p~-~~~~~~~~~~~~~k~ie~yL 154 (183)
|+.. .+. +......++++.|. + +++|+++++..|...+.. .+. ... ........++.+++||
T Consensus 78 ~~~~~~~~----~~~~~~~~~~l~~~-~-~g~T~vt~~~~~~g~~~~~~~~~~~~~-~~~g~~~~l~~L~~~~ 143 (144)
T cd07825 78 WRPGPAGQ----EPGGHRWRWELEPI-G-PGRTRVTETYDWSAVTDLKELLGFPAF-PEVQLEASLDRLATLA 143 (144)
T ss_pred EEccCCCC----CCCceeEEEEEEEC-C-CCcEEEEEEEeccCChhhhhccccCCC-CHHHHHHHHHHHHHHh
Confidence 8853 222 12234567788886 2 578999999988866431 111 111 3445567777777775
No 18
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.08 E-value=4.7e-09 Score=78.17 Aligned_cols=106 Identities=18% Similarity=0.213 Sum_probs=77.0
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCCcEEEE
Q 048527 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYITIF 86 (183)
Q Consensus 7 v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~~~Y 86 (183)
++.+++|++|+++||+++.|+.+ +|+|.|+ +.+++++.|. +. .+++....|....+..++..+++ ++.+.|
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~~-~~~w~~~-~~~~~~~~~~----~~--~~~~~~~~g~~~~~~~~v~~~~~-~~~i~~ 72 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFEN-LPRFMSH-VESVEQLDDT----RS--HWKAKGPAGLSVEWDAEITEQVP-NERIAW 72 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChhh-hHHHhhh-hcEEEEcCCC----ce--EEEEecCCCCcEEEEEEEeccCC-CCEEEE
Confidence 67899999999999999999854 7999995 8888887542 22 23333122444566777766555 445899
Q ss_pred EEEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecC
Q 048527 87 KLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKN 129 (183)
Q Consensus 87 ~iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~ 129 (183)
....|. + .+..++.+.|. + +++|.+++++.|++..
T Consensus 73 ~~~~~~-----~-~~~~~~~f~~~-~-~~~T~vt~~~~~~~~~ 107 (139)
T cd07817 73 RSVEGA-----D-PNAGSVRFRPA-P-GRGTRVTLTIEYEPPG 107 (139)
T ss_pred EECCCC-----C-CcceEEEEEEC-C-CCCeEEEEEEEEECCc
Confidence 876654 2 56688888886 3 5589999999999775
No 19
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.07 E-value=2.2e-08 Score=76.46 Aligned_cols=110 Identities=14% Similarity=0.167 Sum_probs=77.7
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEc-CCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCCcEEE
Q 048527 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIE-GEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYITI 85 (183)
Q Consensus 7 v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~e-Gd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~~~ 85 (183)
++.+..|++|+++||+++.|.. .+|+|+|+ +.++++++ |++.++|+...++.....+....+.-++..+ +..+.+.
T Consensus 3 ~~~~~~i~ap~e~Vw~~~tD~~-~~~~w~~~-v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~-~p~~~~~ 79 (146)
T cd07824 3 FHTVWRIPAPPEAVWDVLVDAE-SWPDWWPG-VERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRI-EPLSLLE 79 (146)
T ss_pred ceEEEEecCCHHHHHHHHhChh-hcchhhhc-eEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEee-cCCcEEE
Confidence 5678899999999999999985 58999995 88898887 3325677775554430112112345555554 4566788
Q ss_pred EEEEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecC
Q 048527 86 FKLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKN 129 (183)
Q Consensus 86 Y~iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~ 129 (183)
|.. +|++ . ...++++.|. ++||.|+++.+++..+
T Consensus 80 ~~~-~g~~-----~-~~~~~~~~~~---~~gt~vt~~~~~~~~~ 113 (146)
T cd07824 80 VRA-SGDL-----E-GVGRWTLAPD---GSGTVVRYDWEVRTTK 113 (146)
T ss_pred EEE-EEee-----e-EEEEEEEEEc---CCCEEEEEEEEEEcCH
Confidence 875 5653 1 2578889885 5679999999999754
No 20
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.06 E-value=1.8e-08 Score=76.61 Aligned_cols=111 Identities=14% Similarity=0.027 Sum_probs=79.3
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCcccccccCCcee--eEEE--EcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCC
Q 048527 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQ--SCEL--IEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNEN 81 (183)
Q Consensus 6 ~v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~--s~e~--~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~ 81 (183)
+++.++.|++|+++||+++.|+.+ +|+|+|.... .++. .+++ .++|+...++.. .+ ......++..+++ +
T Consensus 3 ~~~~s~~I~ap~e~V~~~i~D~~~-~~~W~p~~~~~~~~~~~~~~~~-~~~G~~~~~~~~-~~--~~~~~~~v~~~~p-~ 76 (150)
T cd07818 3 RVERSIVINAPPEEVFPYVNDLKN-WPEWSPWEKLDPDMKRTYSGPD-SGVGASYSWEGN-DK--VGEGEMEITESVP-N 76 (150)
T ss_pred EEEEEEEEeCCHHHHHHHHhCccc-CcccCchhhcCcceEEEecCCC-CCCCeEEEEecC-Cc--ccceEEEEEecCC-C
Confidence 688999999999999999999855 7999994321 1222 1233 467887766654 21 1234556777764 5
Q ss_pred cEEEEEEEecccceeee-EEEEEEEEEEeeeCCCCceEEEEEEEEEecC
Q 048527 82 YITIFKLIEGNVLEMLY-KSFYSVAKVTQKDDHEGGSLVRFTYKYERKN 129 (183)
Q Consensus 82 ~~~~Y~iieG~~l~~~~-~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~ 129 (183)
+++.|++..++. . .++..++++.|. ++||.++|+.+|+..+
T Consensus 77 ~~i~~~~~~~~~----~~~~~~~~~~~~~~---~~gT~v~~~~~~~~~~ 118 (150)
T cd07818 77 ERIEYELRFIKP----FEATNDVEFTLEPV---GGGTKVTWGMSGELPF 118 (150)
T ss_pred cEEEEEEEecCC----ccccceEEEEEEEc---CCceEEEEEEEecCCc
Confidence 679999886442 3 377899999997 5689999999998664
No 21
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=98.90 E-value=1.8e-07 Score=69.27 Aligned_cols=103 Identities=24% Similarity=0.382 Sum_probs=74.9
Q ss_pred EcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCCcEEEEEEEecc
Q 048527 13 VKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYITIFKLIEGN 92 (183)
Q Consensus 13 i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~~~Y~iieG~ 92 (183)
|+||+++||+++.|+. .+|+|+|. ++++++++.+ +. +..-.+... ..+-......++....+.. +.+..++|+
T Consensus 1 V~ap~~~V~~~i~D~e-~~~~~~p~-~~~v~vl~~~-~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~g~ 73 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYE-NYPRFFPP-VKEVRVLERD-GD-GMRARWEVK-FGGIKRSWTSRVTEDPPER--IRFEQISGP 73 (130)
T ss_dssp ESS-HHHHHHHHTTGG-GHHHHCTT-EEEEEEEEEE-CC-EEEEEEEEC-TTTTCEEEEEEEEEECTTT--EEEESSETT
T ss_pred CCCCHHHHHHHHHHHH-HHHHhCCC-CceEEEEEeC-CC-eEEEEEEEe-cCCEEEEEEEEEEEEEeee--eeeeecCCC
Confidence 6899999999999985 58999995 8889999876 32 333345555 3433355666665444444 777777774
Q ss_pred cceeeeEEEEEEEEEEeeeCCCC---ceEEEEEEEEEecCC
Q 048527 93 VLEMLYKSFYSVAKVTQKDDHEG---GSLVRFTYKYERKNE 130 (183)
Q Consensus 93 ~l~~~~~sy~~ti~v~p~~~~~~---gs~v~Wt~~ye~~~~ 130 (183)
++.+..++++.|. ++ ||.++++.+|+....
T Consensus 74 -----~~~~~g~W~~~~~---~~~~~g~~~~v~~~~~~~~~ 106 (130)
T PF03364_consen 74 -----FKSFEGSWRFEPL---GGNEGGTRTRVTYDYEVDPP 106 (130)
T ss_dssp -----EEEEEEEEEEEEE---TTECCEEEEEEEEEEEEETS
T ss_pred -----chhcEEEEEEEEC---CCCcCCCEEEEEEEEEEecC
Confidence 7899999999997 44 788888888887543
No 22
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.85 E-value=1.8e-07 Score=71.36 Aligned_cols=113 Identities=11% Similarity=0.022 Sum_probs=71.0
Q ss_pred EEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEE--EEEEEEeeCCCcEEE
Q 048527 8 EAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIV--KELIEVVDNENYITI 85 (183)
Q Consensus 8 ~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~--kErl~~iD~~~~~~~ 85 (183)
+.+++|++||++||+++.|. ..++.|+|+ +++++.++++ .. ...+++. .++-...+ +=++..+++..+++.
T Consensus 2 ~~~~~v~a~pe~vw~~l~D~-~~~~~~~pg-~~~~~~~~~~--~~--~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (146)
T cd07823 2 ENEFTVPAPPDRVWALLLDI-ERVAPCLPG-ASLTEVEGDD--EY--KGTVKVK-LGPISASFKGTARLLEDDEAARRAV 74 (146)
T ss_pred CceEEecCCHHHHHHHhcCH-HHHHhcCCC-ceeccccCCC--eE--EEEEEEE-EccEEEEEEEEEEEEeccCCCcEEE
Confidence 57899999999999999997 458999996 7777654322 21 2233333 12111122 225666665788888
Q ss_pred EEEEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCC
Q 048527 86 FKLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNE 130 (183)
Q Consensus 86 Y~iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~ 130 (183)
+..-..+.....--....++++.|. +++|.++|+++++..+.
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~~l~~~---~~gT~v~~~~~~~~~g~ 116 (146)
T cd07823 75 LEATGKDARGQGTAEATVTLRLSPA---GGGTRVTVDTDLALTGK 116 (146)
T ss_pred EEEEEecCCCcceEEEEEEEEEEec---CCcEEEEEEEEEEEeeE
Confidence 7754311111012245667778874 66899999999987654
No 23
>PRK10724 hypothetical protein; Provisional
Probab=98.82 E-value=1.3e-07 Score=74.32 Aligned_cols=110 Identities=15% Similarity=0.211 Sum_probs=82.0
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCCcEEE
Q 048527 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYITI 85 (183)
Q Consensus 6 ~v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~~~ 85 (183)
.+..++.|++|++++|+++.|.. ..|+|+|. .+++++++-+++ +.+..++.+ -+|-......|+. +++. +++.
T Consensus 16 ~i~~~~~v~~s~~~v~~lv~Dve-~yp~flp~-~~~s~vl~~~~~--~~~a~l~v~-~~g~~~~f~srv~-~~~~-~~I~ 88 (158)
T PRK10724 16 QISRTALVPYSAEQMYQLVNDVQ-SYPQFLPG-CTGSRVLESTPG--QMTAAVDVS-KAGISKTFTTRNQ-LTSN-QSIL 88 (158)
T ss_pred eEEEEEEecCCHHHHHHHHHHHH-HHHHhCcc-cCeEEEEEecCC--EEEEEEEEe-eCCccEEEEEEEE-ecCC-CEEE
Confidence 67889999999999999999985 58999995 777777765412 334555555 2333345555644 3444 4899
Q ss_pred EEEEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecC
Q 048527 86 FKLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKN 129 (183)
Q Consensus 86 Y~iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~ 129 (183)
+.+++|+ ++++.+.+++.|. + +++|.|++..+|+-..
T Consensus 89 ~~~~~Gp-----F~~l~g~W~f~p~-~-~~~t~V~~~l~fef~s 125 (158)
T PRK10724 89 MQLVDGP-----FKKLIGGWKFTPL-S-QEACRIEFHLDFEFTN 125 (158)
T ss_pred EEecCCC-----hhhccceEEEEEC-C-CCCEEEEEEEEEEEch
Confidence 9999884 6789999999996 3 5679999999999664
No 24
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.49 E-value=4.2e-06 Score=62.76 Aligned_cols=137 Identities=15% Similarity=0.104 Sum_probs=77.1
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCCcEEE
Q 048527 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYITI 85 (183)
Q Consensus 6 ~v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~~~ 85 (183)
.++.+++|+||+++||+++.|. ..+++|+|... .....|. +..| .+.+. +.......-++..+++ .+++.
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~td~-~~~~~W~~~~~--~~~~~~~-~~~g---~~~~~--~~~~~~~~~~i~~~~p-~~~l~ 71 (145)
T cd08898 2 RIERTILIDAPRERVWRALTDP-EHFGQWFGVKL--GPFVVGE-GATG---EITYP--GYEHGVFPVTVVEVDP-PRRFS 71 (145)
T ss_pred eeEEEEEecCCHHHHHHHhcCh-hhhhhcccccC--CCcccCC-ccee---EEecC--CCCccceEEEEEEeCC-CcEEE
Confidence 5789999999999999999987 45799998532 1111121 1222 33443 3211244567776654 45566
Q ss_pred EEEEecc---cce-eeeEEEEEEEEEEeeeCCCCceEEEEEEE-EEecCCCCCCchHH-HHHHHHHHHHHHHHHHh
Q 048527 86 FKLIEGN---VLE-MLYKSFYSVAKVTQKDDHEGGSLVRFTYK-YERKNENVPDLESK-VLEMMINIVKNIDAYLI 155 (183)
Q Consensus 86 Y~iieG~---~l~-~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~-ye~~~~~~p~~~~~-~~~~~~~~~k~ie~yLl 155 (183)
|+...+. ... ..-.....++++.+. +++|.|+++.. |...++........ .......++..+++||-
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~gT~vt~~~~~~~~~~~~~~~~~~~~~~~gw~~~l~~L~~~le 144 (145)
T cd08898 72 FRWHPPAIDPGEDYSAEPSTLVEFTLEPI---AGGTLLTVTESGFDALPAERRAEAYRMNEGGWDEQLENLVAYVE 144 (145)
T ss_pred EEecCCCcccccccCCCCceEEEEEEEec---CCcEEEEEEEcCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 7754322 000 012234578888886 56799999876 33221110000001 34455677777777764
No 25
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.42 E-value=3.3e-05 Score=58.61 Aligned_cols=138 Identities=12% Similarity=0.028 Sum_probs=80.1
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCcccccccCC-ceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCCcEEE
Q 048527 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQ-SVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYITI 85 (183)
Q Consensus 7 v~~ev~i~apadkvW~~~~d~~~~lpk~~P~-~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~~~ 85 (183)
+..+..++||+++||+++.|- ..+.+|+.+ .--.+...+.| -.+|..-.+.+...+|......=++.++|+.+ ++.
T Consensus 2 ~~i~r~~~ap~e~Vw~a~tdp-~~l~~W~~~~~~~~~~~~~~d-~~~Gg~~~~~~~~~~g~~~~~~g~~~~~~p~~-~l~ 78 (143)
T cd08900 2 FTLERTYPAPPERVFAAWSDP-AARARWFVPSPDWTVLEDEFD-FRVGGREVSRGGPKGGPEITVEARYHDIVPDE-RIV 78 (143)
T ss_pred EEEEEEeCCCHHHHHHHhcCH-HHHHhcCCCCCCCceeeeEEe-cCCCCEEEEEEECCCCCEEeeeEEEEEecCCc-eEE
Confidence 567788999999999999975 567888853 11122333344 23444444444313443334556777786654 444
Q ss_pred EE--EEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHh
Q 048527 86 FK--LIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLESKVLEMMINIVKNIDAYLI 155 (183)
Q Consensus 86 Y~--iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~~~~~~~~~~~k~ie~yLl 155 (183)
|+ .-.++. +......++.+.|. +++|.++.+..+-...+.. .... .......++..|++||-
T Consensus 79 ~t~~~~~~~~---~~~~s~v~~~l~~~---~~gT~l~~~~~~~~~~~~~-~~~~-~~~GW~~~l~~L~~~l~ 142 (143)
T cd08900 79 YTYTMHIGGT---LLSASLATVEFAPE---GGGTRLTLTEQGAFLDGDD-DPAG-REQGTAALLDNLAAELE 142 (143)
T ss_pred EEEeeccCCc---cccceEEEEEEEEC---CCCEEEEEEEEEecccccc-hhhh-HHHHHHHHHHHHHHHHh
Confidence 54 333332 12223467888885 6679988887753222110 1112 45566778888888873
No 26
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.38 E-value=1.1e-05 Score=62.53 Aligned_cols=129 Identities=12% Similarity=0.030 Sum_probs=85.0
Q ss_pred eEEEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCCcEE
Q 048527 5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYIT 84 (183)
Q Consensus 5 ~~v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~~ 84 (183)
-++..++.|++|+++||+++.|+ ..+++|+|.. .++ -.+|....+.+. ..+ ......++.++|+. +++
T Consensus 11 ~~i~~~~~i~Ap~e~Vw~altdp-~~~~~W~~~~-------~~~-~~~G~~~~~~~~-~~~-~~~~~~~v~e~~p~-~~l 78 (157)
T cd08899 11 ATLRFERLLPAPIEDVWAALTDP-ERLARWFAPG-------TGD-LRVGGRVEFVMD-DEE-GPNATGTILACEPP-RLL 78 (157)
T ss_pred eEEEEEEecCCCHHHHHHHHcCH-HHHHhhcCCC-------CCC-cccCceEEEEec-CCC-CCccceEEEEEcCC-cEE
Confidence 46889999999999999999987 4589999842 123 245555555655 211 13456777777665 567
Q ss_pred EEEEEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHhhCc
Q 048527 85 IFKLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLESKVLEMMINIVKNIDAYLIQHE 158 (183)
Q Consensus 85 ~Y~iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~~~~~~~~~~~k~ie~yLl~~~ 158 (183)
.|+...++. ....++++.+. ++||.++.+.++.+... .... ..+....++..+.+||-..+
T Consensus 79 ~~~~~~~~~------~~~~~~~l~~~---~~gT~v~~~~~~~~~~~---~~~~-~~~GW~~~L~~Lk~~~e~~~ 139 (157)
T cd08899 79 AFTWGEGGG------ESEVRFELAPE---GDGTRLTLTHRLLDERF---GAGA-VGAGWHLCLDVLEAALEGGP 139 (157)
T ss_pred EEEecCCCC------CceEEEEEEEc---CCCEEEEEEEeccCchh---hhhh-hcccHHHHHHHHHHHHcCCC
Confidence 777654431 23457777775 56799888887765431 1111 34555777888888887665
No 27
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.33 E-value=1.6e-05 Score=58.77 Aligned_cols=132 Identities=9% Similarity=-0.037 Sum_probs=76.5
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCCcEEE
Q 048527 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYITI 85 (183)
Q Consensus 6 ~v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~~~ 85 (183)
+++.++.|+|||++||+++.|.. .+++|.++.. ..++ -.+|.--.+... +.....+.-++.+++ .+++++
T Consensus 1 ~~~~~~~i~ap~e~Vw~~~td~~-~~~~W~~~~~-----~~~~-~~~G~~~~~~~~--~~~~~~~~~~v~~~~-~~~~l~ 70 (136)
T cd08893 1 KFVYVTYIRATPEKVWQALTDPE-FTRQYWGGTT-----VESD-WKVGSAFEYRRG--DDGTVDVEGEVLESD-PPRRLV 70 (136)
T ss_pred CeEEEEEecCCHHHHHHHHcCch-hhhheecccc-----cccC-CcCCCeEEEEeC--CCcccccceEEEEec-CCCeEE
Confidence 47889999999999999999874 5799998622 1334 234443334333 211123455677776 455566
Q ss_pred EEEEecccc-eeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchHH-HHHHHHHHHHHHHHHH
Q 048527 86 FKLIEGNVL-EMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLESK-VLEMMINIVKNIDAYL 154 (183)
Q Consensus 86 Y~iieG~~l-~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~~-~~~~~~~~~k~ie~yL 154 (183)
|+...++.. ..+-.....++.+.|. +++|+++.+..-...+. ...+ .......+++.|.+||
T Consensus 71 ~~~~~~~~~~~~~~~~~~v~~~l~~~---~~~t~l~~~~~~~~~~~----~~~~~~~~gw~~~l~~Lk~~~ 134 (136)
T cd08893 71 HTWRAVWDPEMAAEPPSRVTFEIEPV---GDVVKLTVTHDGFPPGS----PTLEGVSGGWPAILSSLKTLL 134 (136)
T ss_pred EEEecCCCcccCCCCCEEEEEEEEec---CCcEEEEEEecCCCCch----hHHHhhhcCHHHHHHHHHHHh
Confidence 665432211 0022345667778886 55777766655432211 1112 4455566777777776
No 28
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.32 E-value=6.4e-05 Score=57.27 Aligned_cols=138 Identities=12% Similarity=0.058 Sum_probs=78.6
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecC-------CCceEEEEEEEEee
Q 048527 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYA-------GNPQIVKELIEVVD 78 (183)
Q Consensus 6 ~v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~-------g~~~~~kErl~~iD 78 (183)
+++.+..|+||+++||+++-|. ..+.+|.+..=-.+...+.| -.+|-.-.+.+...+ |......=++.+++
T Consensus 1 ~~~~~r~i~ap~e~Vw~a~td~-~~~~~W~~p~~~~~~~~~~d-~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v~ 78 (146)
T cd08895 1 TDRLHRVIAAPPERVYRAFLDP-DALAKWLPPDGMTGTVHEFD-AREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLELV 78 (146)
T ss_pred CEEEEEEECCCHHHHHHHHcCH-HHHhhcCCCCCeEeEEEEEe-cccCCeEEEEEEcCCccccccCCcEeeeEEEEEEEc
Confidence 3678899999999999999986 45788876321122222333 223333333332112 22224455778886
Q ss_pred CCCcEEEEEEEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHh
Q 048527 79 NENYITIFKLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLESKVLEMMINIVKNIDAYLI 155 (183)
Q Consensus 79 ~~~~~~~Y~iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~~~~~~~~~~~k~ie~yLl 155 (183)
+.+ +++|+..-.+... + .....++.+.+. +++|.++++...-+.. . .... ..+....++..+++||-
T Consensus 79 p~~-~i~~~~~~~~~~~-~-~~~~v~~~~~~~---~~~T~lt~~~~~~~~~--~-~~~~-~~~GW~~~l~~L~~~le 145 (146)
T cd08895 79 PNE-RIVYTDVFDDPSL-S-GEMTMTWTLSPV---SGGTDVTIVQSGIPDG--I-PPED-CELGWQESLANLAALVE 145 (146)
T ss_pred CCC-EEEEEEEecCCCC-C-ceEEEEEEEEec---CCCEEEEEEEeCCCch--h-hhhH-HHHHHHHHHHHHHHHhc
Confidence 665 5556532122110 2 234678888886 6779988888643211 1 1122 56666788888888874
No 29
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.30 E-value=2.4e-05 Score=60.77 Aligned_cols=135 Identities=14% Similarity=0.080 Sum_probs=89.1
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCc-e--EEEEEEEEeeCCCcE
Q 048527 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNP-Q--IVKELIEVVDNENYI 83 (183)
Q Consensus 7 v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~-~--~~kErl~~iD~~~~~ 83 (183)
++-+..|++|+++||+++.|. ..+...+|+ ++|++. +|| ...-.+.+. . |+. . ..+=++..+|+..++
T Consensus 3 ~~G~f~V~~p~e~Vw~~L~dp-e~~a~ciPG-~qs~e~-~g~----e~~~~v~l~-i-g~l~~~~~g~~~~~~v~~~~~~ 73 (146)
T COG3427 3 YEGTFRVAAPPEAVWEFLNDP-EQVAACIPG-VQSVET-NGD----EYTAKVKLK-I-GPLKGTFSGRVRFVNVDEPPRS 73 (146)
T ss_pred ccceEEecCCHHHHHHHhcCH-HHHHhhcCC-cceeee-cCC----eEEEEEEEe-e-cceeEEEEEEEEEccccCCCcE
Confidence 566789999999999999986 557788996 999985 565 222222333 1 221 2 346677777899999
Q ss_pred EEEEEEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCC-CCchH--H-HHHHHHHHHHHHHHHHh
Q 048527 84 TIFKLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENV-PDLES--K-VLEMMINIVKNIDAYLI 155 (183)
Q Consensus 84 ~~Y~iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~-p~~~~--~-~~~~~~~~~k~ie~yLl 155 (183)
|+...-.|. +. .+-...+.+.+.|. +++|++.|.+.-+-.+-.. .-+.. . ..+.+...|+.|.++|-
T Consensus 74 ~~i~g~G~~-~~-g~~~~~~~v~l~~~---g~gt~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~~~l~ 144 (146)
T COG3427 74 ITINGSGGG-AA-GFADGTVDVQLEPS---GEGTRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLSSELA 144 (146)
T ss_pred EEEEeeccc-cc-ceeeeeeEEEEEEc---CCCcEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888876533 33 46678888888986 5569999999877654311 01111 1 45555666666666654
No 30
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.27 E-value=9.5e-05 Score=56.37 Aligned_cols=107 Identities=20% Similarity=0.142 Sum_probs=65.4
Q ss_pred EEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCc---eEEEEEEEEeeCCCcEEEE
Q 048527 10 VIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNP---QIVKELIEVVDNENYITIF 86 (183)
Q Consensus 10 ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~---~~~kErl~~iD~~~~~~~Y 86 (183)
+++|++|+++||++|.|. ..+-+.+|+ +++++.+. + .-.+. ++.. - |+. -..+=++..+|+.++.. .
T Consensus 2 s~~v~a~~~~vw~~l~D~-~~l~~ciPG-~~~~e~~~-~-~~~~~---~~v~-v-G~i~~~~~g~~~~~~~~~~~~~~-~ 71 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSDP-ENLARCIPG-VESIEKVG-D-EYKGK---VKVK-V-GPIKGTFDGEVRITEIDPPESYT-L 71 (140)
T ss_dssp EEEECS-HHHHHHHHT-H-HHHHHHSTT-EEEEEEEC-T-EEEEE---EEEE-S-CCCEEEEEEEEEEEEEETTTEEE-E
T ss_pred cEEecCCHHHHHHHhcCH-HHHHhhCCC-cEEeeecC-c-EEEEE---EEEE-e-ccEEEEEEEEEEEEEcCCCcceE-e
Confidence 678999999999999987 557789996 88888765 4 11121 2222 1 222 13455667778777763 3
Q ss_pred EEEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCC
Q 048527 87 KLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNE 130 (183)
Q Consensus 87 ~iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~ 130 (183)
.+-..+.. .-.+..+.+++... + +++|.|.|+++++-.+-
T Consensus 72 ~~~g~g~~--~~~~~~~~~~~~~~-~-~~~T~v~~~~~~~~~G~ 111 (140)
T PF06240_consen 72 EFEGRGRG--GGSSASANITLSLE-D-DGGTRVTWSADVEVGGP 111 (140)
T ss_dssp EEEEEECT--CCEEEEEEEEEEEC-C-CTCEEEEEEEEEEEECH
T ss_pred eeeccCCc--cceEEEEEEEEEcC-C-CCCcEEEEEEEEEEccC
Confidence 33222221 23345556666554 2 34499999999997763
No 31
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.25 E-value=3.4e-05 Score=58.77 Aligned_cols=137 Identities=15% Similarity=0.078 Sum_probs=80.1
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCCcEEEE
Q 048527 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYITIF 86 (183)
Q Consensus 7 v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~~~Y 86 (183)
++.+..++||+++||+++-+. ..+.+|+...--.+...+.| -.+|..-.+.+...+|....+.=++.++|+.. ++.|
T Consensus 2 l~i~r~~~ap~e~Vw~a~Tdp-e~l~~W~~p~~~~~~~~~~d-~r~GG~~~~~~~~~~g~~~~~~g~~~ei~p~~-~l~~ 78 (142)
T cd07826 2 IVITREFDAPRELVFRAHTDP-ELVKRWWGPRGLTMTVCECD-IRVGGSYRYVHRAPDGEEMGFHGVYHEVTPPE-RIVQ 78 (142)
T ss_pred EEEEEEECCCHHHHHHHhCCH-HHHhhccCCCCCcceEEEEe-ccCCCEEEEEEECCCCCEecceEEEEEEcCCC-EEEE
Confidence 567889999999999999985 56778876432233334445 24454444554312343334555677776644 3444
Q ss_pred EE-EecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHHh
Q 048527 87 KL-IEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLES-K-VLEMMINIVKNIDAYLI 155 (183)
Q Consensus 87 ~i-ieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~-~-~~~~~~~~~k~ie~yLl 155 (183)
+- .++.. -.....++++.+. +++|.++.+..|..... ..... . ..+....++..+++||.
T Consensus 79 t~~~~~~~----~~~s~v~~~l~~~---~~gT~l~l~~~~~~~~~--~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 79 TEEFEGLP----DGVALETVTFTEL---GGRTRLTATSRYPSKEA--RDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred EeEecCCC----CCceEEEEEEEEC---CCCEEEEEEEEeCCHHH--HHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 42 22221 1234567888885 66899998766532110 00011 1 45566788888888885
No 32
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.24 E-value=3.3e-05 Score=58.42 Aligned_cols=132 Identities=11% Similarity=0.103 Sum_probs=75.8
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCcccccccC-CceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCCcEEE
Q 048527 7 LEAVIEVKASADKVHEVFSCRPHIVTSISP-QSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYITI 85 (183)
Q Consensus 7 v~~ev~i~apadkvW~~~~d~~~~lpk~~P-~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~~~ 85 (183)
++.+..|+||+++||+++-|. ..+.+|++ ..+. +...+.| -.+|..-.+.+..++|......-++.++++. +++.
T Consensus 2 l~~~r~i~ap~e~Vw~a~t~p-~~l~~W~~p~~~~-~~~~~~d-~~~GG~~~~~~~~~~g~~~~~~g~v~e~~p~-~~l~ 77 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWTDP-EHLAQWWGPEGFT-NTTHEFD-LRPGGRWRFVMHGPDGTDYPNRIVFLEIEPP-ERIV 77 (139)
T ss_pred EEEEEEeCCCHHHHHHHhCCH-HHHhhccCcCCCc-ceEEEEE-ecCCCEEEEEEECCCCCEecceEEEEEEcCC-CEEE
Confidence 577899999999999999975 55778874 2222 1112233 2334333343431344322234577777655 4566
Q ss_pred EEEEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchH---H-HHHHHHHHHHHHHHHHh
Q 048527 86 FKLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLES---K-VLEMMINIVKNIDAYLI 155 (183)
Q Consensus 86 Y~iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~---~-~~~~~~~~~k~ie~yLl 155 (183)
|+...++ + ....++++.|. +++|.++.+..|.... .-.. . ..+....++..+++||-
T Consensus 78 ~t~~~~~----~--~~~v~~~~~~~---~~gT~ltl~~~~~~~~----~~~~~~~~~~~~Gw~~~l~~L~~~l~ 138 (139)
T cd08894 78 YDHGSGP----P--RFRLTVTFEEQ---GGKTRLTWRQVFPTAA----ERCEKIKFGAVEGNEQTLDRLAAYLA 138 (139)
T ss_pred EEeccCC----C--cEEEEEEEEEC---CCCEEEEEEEEcCCHH----HHHHHHHhCHHHHHHHHHHHHHHHHh
Confidence 7764332 1 24467888886 6789998887643210 0011 1 24445677777887763
No 33
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.10 E-value=0.00023 Score=53.30 Aligned_cols=130 Identities=18% Similarity=0.222 Sum_probs=76.6
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCcccccccCCce-eeEEEEcCCCCCCccEEEEEEeecCCCc-eEEEEEEEEeeCCCcE
Q 048527 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSV-QSCELIEGEWGRPGAVICWTFTRYAGNP-QIVKELIEVVDNENYI 83 (183)
Q Consensus 6 ~v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v-~s~e~~eGd~g~~GsvR~~t~~~~~g~~-~~~kErl~~iD~~~~~ 83 (183)
|++.++.++||+++||+++-|. ..+.+|++..- -.+...+.| -.+|..-.+.+...+|.. ..+.-++.+++ ..++
T Consensus 1 ~~~~~~~~~ap~e~Vw~a~td~-e~~~~W~~~~~~~~~~~~~~d-~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~-p~~~ 77 (133)
T cd08897 1 KITVETTVDAPIEKVWEAWTTP-EHITKWNFASDDWHCPSAEND-LRVGGKFSYRMEAKDGSMGFDFEGTYTEVE-PHKL 77 (133)
T ss_pred CEEEEEEeCCCHHHHHHHhCCH-HHHhhCCCCCCCcccceeeec-CCcCCEEEEEEEcCCCCcccccceEEEEEC-CCCE
Confidence 5788999999999999999975 56789964310 011112344 244544444443123321 23445566664 4556
Q ss_pred EEEEEEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHh
Q 048527 84 TIFKLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLESKVLEMMINIVKNIDAYLI 155 (183)
Q Consensus 84 ~~Y~iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~~~~~~~~~~~k~ie~yLl 155 (183)
+.|+...| ...++++.|. ++||.++.+ +..... ...+. .......++..|++||-
T Consensus 78 l~~~~~~~---------~~v~~~l~~~---~~gT~l~l~--~~~~~~--~~~~~-~~~GW~~~l~~L~~~le 132 (133)
T cd08897 78 IEYTMEDG---------REVEVEFTEE---GDGTKVVET--FDAENE--NPVEM-QRQGWQAILDNFKKYVE 132 (133)
T ss_pred EEEEcCCC---------CEEEEEEEEC---CCCEEEEEE--ECCCCC--CcHHH-HHHHHHHHHHHHHHHhh
Confidence 77776432 2468888885 667888765 433221 11222 45666788888888874
No 34
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.05 E-value=0.00014 Score=55.34 Aligned_cols=139 Identities=12% Similarity=0.040 Sum_probs=76.1
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCCcEEEE
Q 048527 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYITIF 86 (183)
Q Consensus 7 v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~~~Y 86 (183)
+..++.|+||+++||+++-+. ..+.+|++..=-.+...+.| -.+|..-.+.+..++|......=++.++|+..+ +.|
T Consensus 2 l~i~r~i~a~~e~Vw~a~t~p-e~~~~W~~p~~~~~~~~~~d-~~~GG~~~~~~~~~~g~~~~~~g~v~~i~p~~~-l~~ 78 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWTEP-ELLKQWFCPKPWTTEVAELD-LRPGGAFRTVMRGPDGEEFPNPGCFLEVVPGER-LVF 78 (146)
T ss_pred eEEEEEeCCCHHHHHHHcCCH-HHHhccCCCCCccceEEEEE-eecCcEEEEEEECCCCCEecceEEEEEEeCCCE-EEE
Confidence 567899999999999999975 45678876320011112233 123333344443134432334667888876653 444
Q ss_pred E--EEec-ccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHHh
Q 048527 87 K--LIEG-NVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLES-K-VLEMMINIVKNIDAYLI 155 (183)
Q Consensus 87 ~--iieG-~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~-~-~~~~~~~~~k~ie~yLl 155 (183)
+ +.++ +....+ .-..+++++|. ++||+++.+..+.... ...... . ..+....++..+++||.
T Consensus 79 t~~~~~~~~~~~~~--~~~v~~~~~~~---~~gT~Ltl~~~~~~~~--~~~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 79 TDALTPGWRPAEKP--FMTAIITFEDE---GGGTRYTARARHWTEA--DRKQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred EEeecCCcCCCCCC--cEEEEEEEEec---CCcEEEEEEEEeCCHH--HHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 4 4332 111101 13567888886 6789988775442110 000001 0 24566788888888874
No 35
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.99 E-value=0.0012 Score=52.54 Aligned_cols=142 Identities=13% Similarity=0.104 Sum_probs=83.1
Q ss_pred eEEEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCc---eEEEEEEEEeeCCC
Q 048527 5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNP---QIVKELIEVVDNEN 81 (183)
Q Consensus 5 ~~v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~---~~~kErl~~iD~~~ 81 (183)
-.+..+..|++||+++|+++.|.. ..|+|.| .+.++++++-. +.-..+-.+.+. ...+. ..+-.+-...+.++
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi~d~e-~~~~w~~-~~~~~~vie~~-~~~~~i~~~~~~-~p~pvs~Rdfv~~~~~~~~~~~ 116 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALLRDTE-SYPQWMP-NCKESRVLKRT-DDNERSVYTVID-LPWPVKDRDMVLRSTTEQDADD 116 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHHhhhH-hHHHHHh-hcceEEEeecC-CCCcEEEEEEEe-cccccCCceEEEEEEEEEcCCC
Confidence 367788899999999999999874 5799999 58889988765 221223333343 22211 12221111222223
Q ss_pred cEEEEEEEeccc--c--e--eeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHH
Q 048527 82 YITIFKLIEGNV--L--E--MLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLES-K-VLEMMINIVKNIDAY 153 (183)
Q Consensus 82 ~~~~Y~iieG~~--l--~--~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~-~-~~~~~~~~~k~ie~y 153 (183)
..+...+..++. . + .....+.+.+.++|. + +++|.+++...+++.+. .|..-. . .......+++++.+.
T Consensus 117 ~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~-~-~~~t~vt~~~~~dp~g~-iP~~lv~~~~~~~~~~~l~~l~~~ 193 (195)
T cd08876 117 GSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPL-G-NGKTRVTYQAYADPGGS-IPGWLANAFAKDAPYNTLENLRKQ 193 (195)
T ss_pred CEEEEEeecCCccCCCCCCeEEceeceeeEEEEEC-C-CCeEEEEEEEEeCCCCC-CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444443322 1 0 124677778888887 4 67899999999998753 443322 2 344445555555543
No 36
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=97.87 E-value=0.00011 Score=58.86 Aligned_cols=114 Identities=13% Similarity=0.141 Sum_probs=82.3
Q ss_pred CCcceEEEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCC
Q 048527 1 MSLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNE 80 (183)
Q Consensus 1 m~~~~~v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~ 80 (183)
|+-.-.++.+|+|+.|++.||...+|+.+ +|.||- .+.|+++.+-. + -.|+...+.|-.-..+-+|.+ |..
T Consensus 66 ~~~~i~v~~~V~I~kPae~vy~~W~dLe~-lP~~Mk-hl~SVkVlddk---r---SrW~~~ap~g~~v~Wea~it~-d~~ 136 (217)
T COG5637 66 MAKPIEVEVQVTIDKPAEQVYAYWRDLEN-LPLWMK-HLDSVKVLDDK---R---SRWKANAPLGLEVEWEAEITK-DIP 136 (217)
T ss_pred ccCceEEEEEEEeCChHHHHHHHHHhhhh-hhHHHH-hhceeeccCCC---c---cceeEcCCCCceEEEeehhhc-cCC
Confidence 44456789999999999999999999965 799998 59999998654 2 345555224433355666664 899
Q ss_pred CcEEEEEEEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCC
Q 048527 81 NYITIFKLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNE 130 (183)
Q Consensus 81 ~~~~~Y~iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~ 130 (183)
+.+|.|.=++|--++ -...++|.+.+ +..|+|+.+..|-+-+.
T Consensus 137 ~e~I~W~Sl~Ga~v~-----NsG~VrF~~~p--g~~t~V~v~lsY~~Pgg 179 (217)
T COG5637 137 GERIQWESLPGARVE-----NSGAVRFYDAP--GDSTEVKVTLSYRPPGG 179 (217)
T ss_pred CcEEeeecCCCCcCC-----CCccEEeeeCC--CCceEEEEEEEecCCcc
Confidence 999999999985331 12345565542 44689999999986543
No 37
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=97.81 E-value=0.0011 Score=50.61 Aligned_cols=134 Identities=10% Similarity=0.005 Sum_probs=72.2
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCcccccccCCce-------eeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeC
Q 048527 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSV-------QSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDN 79 (183)
Q Consensus 7 v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v-------~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~ 79 (183)
++.++.|+||+++||+++-+ .+.+|++..- ..|++. -.+|-...+ .. .+|. ....=++.++|+
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t~---~l~~W~~p~~~~~~~~~~~~~~d----~~~GG~~~~-~~-~~g~-~~~~g~v~~v~p 71 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFTE---GFGAWWPPEYHFVFSPGAEVVFE----PRAGGRWYE-IG-EDGT-ECEWGTVLAWEP 71 (149)
T ss_pred eEEEEEecCCHHHHHHHHHh---chhhccCCCcccccCCCccEEEc----ccCCcEEEE-ec-CCCc-EeceEEEEEEcC
Confidence 67899999999999999997 2567765321 233332 122222222 22 2343 223457777766
Q ss_pred CCcEEEEEEE-ecccceeeeEEEEEEEEEEeeeCCC-CceEEEEEEEEEecCCC-CCCchH-H-HHHHHHHHHHHHHHHH
Q 048527 80 ENYITIFKLI-EGNVLEMLYKSFYSVAKVTQKDDHE-GGSLVRFTYKYERKNEN-VPDLES-K-VLEMMINIVKNIDAYL 154 (183)
Q Consensus 80 ~~~~~~Y~ii-eG~~l~~~~~sy~~ti~v~p~~~~~-~gs~v~Wt~~ye~~~~~-~p~~~~-~-~~~~~~~~~k~ie~yL 154 (183)
.+ +++|+-. ..+....+-..-..++++.|. + ++|.++.+-.+...... ...... . .......++..+++||
T Consensus 72 ~~-~l~~tw~~~~~~~~~~~~~t~vt~~l~~~---~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l 147 (149)
T cd08891 72 PS-RLVFTWQINADWRPDPDKASEVEVRFEAV---GAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAA 147 (149)
T ss_pred CC-EEEEEeccCCCcCcCCCCceEEEEEEEEC---CCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHh
Confidence 54 4455543 111110010123577888885 5 78999888776543211 011111 1 3344566777787776
No 38
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.0011 Score=51.25 Aligned_cols=138 Identities=17% Similarity=0.111 Sum_probs=73.3
Q ss_pred CcceEEEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCC
Q 048527 2 SLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNEN 81 (183)
Q Consensus 2 ~~~~~v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~ 81 (183)
.....+..+..|++|+++||+++-|. .++++|+..-=...++.-|. + ....+...+++.....-++.++++..
T Consensus 5 ~~~~~~~~er~i~aP~e~Vf~A~Tdp-e~l~~W~~~~~~~~d~r~gg----~--~~~~~~~~~g~~~~~~~~~~~v~p~~ 77 (149)
T COG3832 5 VEDRTLEIERLIDAPPEKVFEALTDP-ELLARWFMPGGAEFDARTGG----G--ERVRFRGPDGPVHSFEGEYLEVVPPE 77 (149)
T ss_pred CCCceEEEEEeecCCHHHHHHHhcCH-HHHHhhcCCCCCccceecCC----c--eEEeeecCCCCeeecceEEEEEcCCc
Confidence 34568999999999999999999985 67899986210011111121 1 22223312443345566777775554
Q ss_pred cEEEEE--EEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchH-H-H--HHHHHHHHHHHHHHHh
Q 048527 82 YITIFK--LIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLES-K-V--LEMMINIVKNIDAYLI 155 (183)
Q Consensus 82 ~~~~Y~--iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~-~-~--~~~~~~~~k~ie~yLl 155 (183)
++.|+ .-+++. +..--..+++++|. . +|+ +++..........+.... + . .+....++..+.++|.
T Consensus 78 -rIv~tw~~~~~~~---~~~~~~v~~~l~~~-~-~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 78 -RIVFTWDFDEDGE---PFLKSLVTITLTPE-D-DGG---TTTLVRTSGGGFLEDEDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred -EEEEEeccCCCCC---cccCceEEEEEEEe-c-CCC---cEEEEEEeeccccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence 44455 433332 22234456677775 2 332 233333333322222222 1 2 5556777777777764
No 39
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=97.69 E-value=0.00034 Score=54.19 Aligned_cols=112 Identities=16% Similarity=0.196 Sum_probs=82.0
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCCcEEE
Q 048527 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYITI 85 (183)
Q Consensus 6 ~v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~~~ 85 (183)
+++...-+.-+|+++|+++.|. .-.|+.+|. -.+.++.+.+ ...-+-.++.+ -.|=-.+..-|+. +++..++|.
T Consensus 3 ~~~~s~lv~y~a~~mF~LV~dV-~~YP~FlP~-C~~s~v~~~~--~~~l~A~l~V~-~k~i~e~F~Trv~-~~~~~~~I~ 76 (146)
T COG2867 3 QIERTALVPYSASQMFDLVNDV-ESYPEFLPW-CSASRVLERN--ERELIAELDVG-FKGIRETFTTRVT-LKPTARSID 76 (146)
T ss_pred eeEeeeeccCCHHHHHHHHHHH-HhCchhccc-cccceEeccC--cceeEEEEEEE-hhheeeeeeeeee-ecCchhhhh
Confidence 5778889999999999999987 458999995 6667777776 23345555544 2221234445544 455555777
Q ss_pred EEEEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCC
Q 048527 86 FKLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNE 130 (183)
Q Consensus 86 Y~iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~ 130 (183)
-++++| |++-..+++++.|- + +++|.|+..++|+-.+.
T Consensus 77 ~~l~~G-----PFk~L~~~W~F~pl-~-~~~ckV~f~ldfeF~s~ 114 (146)
T COG2867 77 MKLIDG-----PFKYLKGGWQFTPL-S-EDACKVEFFLDFEFKSR 114 (146)
T ss_pred hhhhcC-----ChhhhcCceEEEEC-C-CCceEEEEEEEeeehhH
Confidence 777877 57888999999996 3 77899999999998753
No 40
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=97.55 E-value=0.0038 Score=45.25 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=69.4
Q ss_pred cCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCCcEEEEEEEeccc
Q 048527 14 KASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYITIFKLIEGNV 93 (183)
Q Consensus 14 ~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~~~Y~iieG~~ 93 (183)
+||+++||+++.+. ..+.+|.+......++ .+|..-.+ .. .+|......=++.++++..+ +.|+.--++.
T Consensus 1 ~ap~e~Vw~a~t~~-~~~~~W~~~~~~~~~~------~~Gg~~~~-~~-~~g~~~~~~~~v~~~~p~~~-i~~~~~~~~~ 70 (124)
T PF08327_consen 1 DAPPERVWEALTDP-EGLAQWFTTSEAEMDF------RPGGSFRF-MD-PDGGEFGFDGTVLEVEPPER-IVFTWRMPDD 70 (124)
T ss_dssp SSSHHHHHHHHHSH-HHHHHHSEEEEEEEEC------STTEEEEE-EE-TTSEEEEEEEEEEEEETTTE-EEEEEEEETS
T ss_pred CcCHHHHHHHHCCH-hHHhhccCCCcceeee------ecCCEEEE-Ee-cCCCCceeeEEEEEEeCCEE-EEEEEEccCC
Confidence 69999999999975 5678883322222222 33443333 23 34443344555888877665 6777433332
Q ss_pred ceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchH--H-HHHHHHHHHHHHHHHH
Q 048527 94 LEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLES--K-VLEMMINIVKNIDAYL 154 (183)
Q Consensus 94 l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~--~-~~~~~~~~~k~ie~yL 154 (183)
. +-.....++.+.+. +++|.++.+..=. +.... . .......++..|.+||
T Consensus 71 ~--~~~~~~v~~~~~~~---~~~T~l~~~~~~~------~~~~~~~~~~~~gw~~~l~~L~~~l 123 (124)
T PF08327_consen 71 P--DGPESRVTFEFEEE---GGGTRLTLTHSGF------PDDDEEEEGMEQGWEQMLDRLKAYL 123 (124)
T ss_dssp S--SCEEEEEEEEEEEE---TTEEEEEEEEEEE------HSHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred C--CCCceEEEEEEEEc---CCcEEEEEEEEcC------CccHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 12355678888885 6778887776211 12221 2 3455577777787776
No 41
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.53 E-value=0.0015 Score=49.20 Aligned_cols=126 Identities=18% Similarity=0.162 Sum_probs=72.9
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCCcEEEE
Q 048527 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYITIF 86 (183)
Q Consensus 7 v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~~~Y 86 (183)
++.++.|+||+++||+++-+. ..+.+|++. -...++.. |....+.|. ..++ .+.=++.++++ .+++.|
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p-~~l~~W~~~-~~~~~~~~------Gg~~~~~~~-~~~~--~~~g~~~~~~p-~~~l~~ 69 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDP-EITTKFWFT-GSSGRLEE------GKTVTWDWE-MYGA--SVPVNVLEIEP-NKRIVI 69 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCH-HHhcccccc-CCCccccC------CCEEEEEEE-ccCC--ceEEEEEEEcC-CCEEEE
Confidence 468999999999999999975 557787553 22333333 323345555 3332 23346666744 466777
Q ss_pred EEEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchH----H-HHHHHHHHHHHHHHHHhh
Q 048527 87 KLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLES----K-VLEMMINIVKNIDAYLIQ 156 (183)
Q Consensus 87 ~iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~----~-~~~~~~~~~k~ie~yLl~ 156 (183)
+.-.++ +. -..++++.+. + +++|.++.+-...+.. .++. . .......++..+++||..
T Consensus 70 ~w~~~~----~~--s~v~~~l~~~-~-~ggT~ltl~~~~~~~~----~~~~~~~~~~~~~GW~~~L~~L~~~le~ 132 (136)
T cd08901 70 EWGDPG----EP--TTVEWTFEEL-D-DGRTFVTITESGFPGT----DDEGLKQALGSTEGWTLVLAGLKAYLEH 132 (136)
T ss_pred EecCCC----CC--EEEEEEEEEC-C-CCcEEEEEEECCCCCC----cHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 754322 22 2367888885 1 3788887775433221 1111 0 123446677778877754
No 42
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=97.51 E-value=0.0057 Score=45.51 Aligned_cols=122 Identities=11% Similarity=0.039 Sum_probs=67.9
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCCcEEEE
Q 048527 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYITIF 86 (183)
Q Consensus 7 v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~~~Y 86 (183)
++.++.++||+++||+++-+. ..+.+|+.. ..+.++..| |. +.+. +| .+.=++.++++. ++++|
T Consensus 2 i~~~r~i~ap~e~Vw~A~T~~-e~l~~W~~~-~~~~d~~~G-----G~---~~~~--~g---~~~g~~~~i~p~-~~l~~ 65 (126)
T cd08892 2 ISLTETFQVPAEELYEALTDE-ERVQAFTRS-PAKVDAKVG-----GK---FSLF--GG---NITGEFVELVPG-KKIVQ 65 (126)
T ss_pred eEEEEEECCCHHHHHHHHCCH-HHHHhhcCC-CceecCCCC-----CE---EEEe--CC---ceEEEEEEEcCC-CEEEE
Confidence 567899999999999999975 557788753 334444333 22 2333 23 234466777644 44444
Q ss_pred EEEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchHHHHHHHHH-HHHHHHHHH
Q 048527 87 KLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLESKVLEMMIN-IVKNIDAYL 154 (183)
Q Consensus 87 ~iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~~~~~~~~~-~~k~ie~yL 154 (183)
+---.+. + .-..-..++.+.+. +++|.++.+-...+.. ..+. ..+.... ++..|.++|
T Consensus 66 ~w~~~~~-~-~~~~s~v~~~l~~~---~~gT~ltl~~~g~~~~----~~~~-~~~GW~~~~~~~l~~~~ 124 (126)
T cd08892 66 KWRFKSW-P-EGHYSTVTLTFTEK---DDETELKLTQTGVPAG----EEER-TREGWERYYFESIKQTF 124 (126)
T ss_pred EEEcCCC-C-CCCcEEEEEEEEEC---CCCEEEEEEEECCCCc----hHHH-HHhhHHHHHHHHHHHHh
Confidence 4321111 0 00123467777775 5678877766544321 1122 3444443 667776665
No 43
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=96.47 E-value=0.023 Score=42.88 Aligned_cols=121 Identities=11% Similarity=0.097 Sum_probs=63.5
Q ss_pred EcCCHHHHHHHHhcCCcccccc-cCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCCcE-EEEEEEe
Q 048527 13 VKASADKVHEVFSCRPHIVTSI-SPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYI-TIFKLIE 90 (183)
Q Consensus 13 i~apadkvW~~~~d~~~~lpk~-~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~-~~Y~iie 90 (183)
++||+++||+++-|- ..+.+| .+ ....+++..| .. +.+. .+ .+.=++.++|+..+. ++++..+
T Consensus 1 f~ap~e~Vw~A~Tdp-~~l~~w~~~-~~~~~d~~~G------G~--f~~~--~~---~~~G~~~ev~pp~rlv~tw~~~~ 65 (132)
T PTZ00220 1 FYVPPEVLYNAFLDA-YTLTRLSLG-SPAEMDAKVG------GK--FSLF--NG---SVEGEFTELEKPKKIVQKWRFRD 65 (132)
T ss_pred CCCCHHHHHHHHcCH-HHHHHHhcC-CCccccCCcC------CE--EEEe--cC---ceEEEEEEEcCCCEEEEEEecCC
Confidence 479999999999975 567777 43 1222333333 22 2222 11 133366667665532 3444432
Q ss_pred cccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCC---CCchHHHHHHHHH-HHHHHHHHHh
Q 048527 91 GNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENV---PDLESKVLEMMIN-IVKNIDAYLI 155 (183)
Q Consensus 91 G~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~---p~~~~~~~~~~~~-~~k~ie~yLl 155 (183)
.+. . .+ -..|+++.|. + +++|.++.+..-.+..+.. ...+. ..+.... ++..|++||-
T Consensus 66 ~~~-~-~~--s~vt~~~~~~-~-~g~T~lt~~~~g~~~~~~~~~~~~~~~-~~~GW~~~~ld~L~~~l~ 127 (132)
T PTZ00220 66 WEE-D-VY--SKVTIEFRAV-E-EDHTELKLTQTGIPSLDKFGNGGCLER-CRNGWTQNFLDRFEKILG 127 (132)
T ss_pred CCC-C-Cc--eEEEEEEEeC-C-CCcEEEEEEEecCccccccCCCchhhH-HHhChHHHHHHHHHHHhC
Confidence 111 1 12 2478888885 2 4678888777633222110 01121 3445555 5888888763
No 44
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=95.96 E-value=0.63 Score=37.82 Aligned_cols=146 Identities=5% Similarity=0.007 Sum_probs=80.0
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCcc--EEEEEEeecCCCc---eEEEEEEEEeeCC
Q 048527 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGA--VICWTFTRYAGNP---QIVKELIEVVDNE 80 (183)
Q Consensus 6 ~v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~Gs--vR~~t~~~~~g~~---~~~kErl~~iD~~ 80 (183)
-+..+..+++|++++++.+-+.....++|.+ .+.++++++-- ...+ ++.++...+++.. ..+.-|...-+..
T Consensus 50 ~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~-~~~~~~vl~~i--d~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~ 126 (209)
T cd08905 50 VFRLEVVVDQPLDNLYSELVDRMEQMGEWNP-NVKEVKILQRI--GKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGS 126 (209)
T ss_pred EEEEEEEecCCHHHHHHHHHhchhhhceecc-cchHHHHHhhc--CCCceEEEEEeccCCCCccCccceEEEEEEEEcCC
Confidence 4667889999999999555533355799998 47777777553 1122 2221111011111 1222222222333
Q ss_pred CcEEEEEEEecccce-----eeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHH
Q 048527 81 NYITIFKLIEGNVLE-----MLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLES-K-VLEMMINIVKNIDAY 153 (183)
Q Consensus 81 ~~~~~Y~iieG~~l~-----~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~-~-~~~~~~~~~k~ie~y 153 (183)
+..+.....+-+.++ .....+.+-+.++|.++++++|.++|.+..+++|. .|..-. . ..+.....++.+.++
T Consensus 127 ~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~-iP~~lvN~~~~~~~~~~~~~Lr~~ 205 (209)
T cd08905 127 TCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW-LPKSIINQVLSQTQVDFANHLRQR 205 (209)
T ss_pred cEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC-CCHHHHHHHhHHhHHHHHHHHHHH
Confidence 332222222222221 23556667788888621126899999999999975 454332 2 344445666666666
Q ss_pred Hh
Q 048527 154 LI 155 (183)
Q Consensus 154 Ll 155 (183)
|.
T Consensus 206 ~~ 207 (209)
T cd08905 206 MA 207 (209)
T ss_pred Hh
Confidence 54
No 45
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=95.94 E-value=0.73 Score=37.64 Aligned_cols=146 Identities=8% Similarity=-0.010 Sum_probs=81.2
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeec--C-CCc-eEEEEEEEEeeCCC
Q 048527 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRY--A-GNP-QIVKELIEVVDNEN 81 (183)
Q Consensus 6 ~v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~--~-g~~-~~~kErl~~iD~~~ 81 (183)
.+..+.++++|++++|+++.|.. ..++|.+ .++++++++--.... .|-.+.+..+ . .+. ..+.-+....+.+.
T Consensus 46 ~~~ge~~v~as~~~v~~ll~D~~-~r~~Wd~-~~~~~~vl~~~~~d~-~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~ 122 (205)
T cd08874 46 GFLGAGVIKAPLATVWKAVKDPR-TRFLYDT-MIKTARIHKTFTEDI-CLVYLVHETPLCLLKQPRDFCCLQVEAKEGEL 122 (205)
T ss_pred eEEEEEEEcCCHHHHHHHHhCcc-hhhhhHH-hhhheeeeeecCCCe-EEEEEEecCCCCCCCCCCeEEEEEEEEECCCc
Confidence 34567889999999999999874 4799998 699999987531222 2233333211 1 022 22322322223333
Q ss_pred cEEEEEEEecccce------eeeEEEEEEEEEEeeeC-CCCceEEEEEEEEEecCCCCCCchH-HHHHHHHHHHHHHHHH
Q 048527 82 YITIFKLIEGNVLE------MLYKSFYSVAKVTQKDD-HEGGSLVRFTYKYERKNENVPDLES-KVLEMMINIVKNIDAY 153 (183)
Q Consensus 82 ~~~~Y~iieG~~l~------~~~~sy~~ti~v~p~~~-~~~gs~v~Wt~~ye~~~~~~p~~~~-~~~~~~~~~~k~ie~y 153 (183)
..+.-+-++-+.++ .....+.+-+.++|.++ |++.|.++..+..++.+++.|..-. .+......++..+-.|
T Consensus 123 ~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~~l~N~~~~~~p~~~~~~~~~ 202 (205)
T cd08874 123 SVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPAQLLSSLSKRQPLVIARLALF 202 (205)
T ss_pred EEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCHHHHhHHHHhccHHHHHHHHH
Confidence 33322222221111 24556777888888411 1457999999999999766766532 2333334444444444
Q ss_pred H
Q 048527 154 L 154 (183)
Q Consensus 154 L 154 (183)
|
T Consensus 203 ~ 203 (205)
T cd08874 203 L 203 (205)
T ss_pred h
Confidence 3
No 46
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=95.93 E-value=0.56 Score=36.29 Aligned_cols=118 Identities=17% Similarity=0.301 Sum_probs=68.9
Q ss_pred EEEEEEcC-------CHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCC
Q 048527 8 EAVIEVKA-------SADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNE 80 (183)
Q Consensus 8 ~~ev~i~a-------padkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~ 80 (183)
++.+.||- ..+++|.-+..-..--..+.| .+.+|++++.+ + .-..|.++|+ +. .++|++.. ..
T Consensus 3 ~~tvpIN~p~~~p~LTr~QlW~GL~~kar~p~~Fvp-~i~~c~Vl~e~-~-~~l~Rel~f~--~~---~v~e~vt~--~~ 72 (141)
T cd08863 3 EHTVPINDPGNIPTLTRAQLWRGLVLRAREPQLFVP-GLDRCEVLSES-G-TVLERELTFG--PA---KIRETVTL--EP 72 (141)
T ss_pred cEEEecCCCCCCCccCHHHHHhHHHhhhCCchhccc-ccceEEEEecC-C-CEEEEEEEEC--Cc---eEEEEEEe--cC
Confidence 34555554 356999988744343334666 58999999876 3 2457999998 33 79999874 44
Q ss_pred CcEEEEEEEe-cccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchHH-HHHHHHHHHH
Q 048527 81 NYITIFKLIE-GNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLESK-VLEMMINIVK 148 (183)
Q Consensus 81 ~~~~~Y~iie-G~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~~-~~~~~~~~~k 148 (183)
..++.|.+-. |+ +. ++.+... ..|. .-.++.|+....+..+++.+ +.+...++++
T Consensus 73 ~~~v~f~~~~~g~-------~l--~~~iee~---~~g~-L~lrf~ye~~~p~~~~~e~~~~~~~~~~a~~ 129 (141)
T cd08863 73 PSRVHFLQADAGG-------TL--TNTIEEP---EDGA-LYLRFVYETTLPEVAEEEAKAYQEIVKQAYK 129 (141)
T ss_pred CcEEEEEecCCCC-------eE--EEEeccC---CCCc-EEEEEEEEecCCCcCchHHHHHHHHHHHHHH
Confidence 5567777766 33 22 2222221 2333 56678888754433333322 4444444443
No 47
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=95.73 E-value=0.54 Score=36.64 Aligned_cols=99 Identities=15% Similarity=0.244 Sum_probs=55.8
Q ss_pred EEEEEEEcCCH--------HHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEee
Q 048527 7 LEAVIEVKASA--------DKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVD 78 (183)
Q Consensus 7 v~~ev~i~apa--------dkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD 78 (183)
+++.+.||-|. +++|+-+......-..++| .+.+|++++-. ...-.|.++|+ + ..++|++...
T Consensus 2 ~~htvpIN~p~~~~~~LTr~QlW~GL~~kar~p~~Fvp-~i~~c~Vl~e~--~~~~~R~v~fg--~---~~v~E~v~~~- 72 (149)
T PF08982_consen 2 FEHTVPINPPGASLPVLTREQLWRGLVLKARNPQLFVP-GIDSCEVLSES--DTVLTREVTFG--G---ATVRERVTLY- 72 (149)
T ss_dssp EEEEEE------------HHHHHHHHHHHHH-GGGT-T-T--EEEEEEE---SSEEEEEEEET--T---EEEEEEEEEE-
T ss_pred ccEEEecCCCcccCCccCHHHHHHHHHHHHhChhhCcc-ccCeEEEEecC--CCeEEEEEEEC--C---cEEEEEEEEe-
Confidence 45556665554 5799988854443346777 68999999765 45778999996 4 3899998753
Q ss_pred CCCcEEEEEEEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEec
Q 048527 79 NENYITIFKLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERK 128 (183)
Q Consensus 79 ~~~~~~~Y~iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~ 128 (183)
...++.|.... =++...+|. .|. + | ..-.++.|+-.
T Consensus 73 -~~~~V~f~~~~-------Gs~lt~~I~-e~~---~-g-~L~ltf~ye~~ 108 (149)
T PF08982_consen 73 -PPERVDFAQHD-------GSSLTNIIS-EPE---P-G-DLFLTFTYEWR 108 (149)
T ss_dssp -TTTEEEESSSB-------EEEEEEEEE-EEE---T-T-EEEEEEEEEEE
T ss_pred -CCcEEEEEcCC-------CCEEEEEEe-cCC---C-C-cEEEEEEEEec
Confidence 33466662222 234444444 342 3 3 45667777764
No 48
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=95.53 E-value=1 Score=36.30 Aligned_cols=145 Identities=9% Similarity=0.049 Sum_probs=79.2
Q ss_pred EEEEEEEcCCHHHHHHHHh-cCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecC-CCc---eEEEEEEEEeeCCC
Q 048527 7 LEAVIEVKASADKVHEVFS-CRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYA-GNP---QIVKELIEVVDNEN 81 (183)
Q Consensus 7 v~~ev~i~apadkvW~~~~-d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~-g~~---~~~kErl~~iD~~~ 81 (183)
+..+..+++|+++++..+. |. ...++|.+. +..+++++.-.+..--+...+.. .. .+. ..+--|--..++..
T Consensus 50 ~k~~~~i~~~~~~v~~~l~~d~-~~~~~Wd~~-~~~~~~i~~~d~~~~i~y~~~~~-~~~~~vs~RDfV~~r~~~~~~~~ 126 (208)
T cd08868 50 FRLTGVLDCPAEFLYNELVLNV-ESLPSWNPT-VLECKIIQVIDDNTDISYQVAAE-AGGGLVSPRDFVSLRHWGIRENC 126 (208)
T ss_pred EEEEEEEcCCHHHHHHHHHcCc-cccceecCc-ccceEEEEEecCCcEEEEEEecC-cCCCcccccceEEEEEEEecCCe
Confidence 6678899999999997554 54 557999995 66677665531221112212211 11 111 12222222233333
Q ss_pred cEEEEEEEecccce-----eeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHH
Q 048527 82 YITIFKLIEGNVLE-----MLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLES-K-VLEMMINIVKNIDAYL 154 (183)
Q Consensus 82 ~~~~Y~iieG~~l~-----~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~-~-~~~~~~~~~k~ie~yL 154 (183)
..+...-++-+-.+ .....+.+.+.++|.+.+.++|.++|.+..++.|. .|.--- . .......+++.+..++
T Consensus 127 ~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~-iP~~lvN~~~~~~~~~~~~~Lr~~~ 205 (208)
T cd08868 127 YLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGW-LPQYLVDQALASVLLDFMKHLRKRI 205 (208)
T ss_pred EEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCC-CcceeeehhhHHHHHHHHHHHHHHH
Confidence 33333333322111 23455667778888522135799999999999864 444322 2 3555567777777776
Q ss_pred h
Q 048527 155 I 155 (183)
Q Consensus 155 l 155 (183)
.
T Consensus 206 ~ 206 (208)
T cd08868 206 A 206 (208)
T ss_pred h
Confidence 4
No 49
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=95.29 E-value=1.2 Score=36.14 Aligned_cols=142 Identities=11% Similarity=0.041 Sum_probs=82.0
Q ss_pred eEEEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCc----e-EE-E-EEEEEe
Q 048527 5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNP----Q-IV-K-ELIEVV 77 (183)
Q Consensus 5 ~~v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~----~-~~-k-Erl~~i 77 (183)
..+..+..+++|++++..++.|. .+.|+|.|. ....+.++.. +.-..+-.+.+. -|. + .+ . -.++.+
T Consensus 46 ~~~k~e~~i~~~~~~~~~vl~d~-~~~~~W~p~-~~~~~~l~~~-~~~~~v~y~~~~---~PwPv~~RD~v~~~~~~~~~ 119 (215)
T cd08877 46 LSLRMEGEIDGPLFNLLALLNEV-ELYKTWVPF-CIRSKKVKQL-GRADKVCYLRVD---LPWPLSNREAVFRGFGVDRL 119 (215)
T ss_pred EEEEEEEEecCChhHeEEEEehh-hhHhhhccc-ceeeEEEeec-CCceEEEEEEEe---CceEecceEEEEEEEEEeee
Confidence 45778889999999999999886 678999996 4444444432 111222222222 221 1 11 1 122223
Q ss_pred eCCCcEEEEE--EEecc----------cce-----eeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchH-H-
Q 048527 78 DNENYITIFK--LIEGN----------VLE-----MLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLES-K- 138 (183)
Q Consensus 78 D~~~~~~~Y~--iieG~----------~l~-----~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~-~- 138 (183)
++++ .+... -+..+ +.. .....+.+-+.++|. + +++|.+++.+..+|.+...|..-. -
T Consensus 120 ~~~~-~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~-~-~~~t~v~~~~~~DP~g~~IP~~liN~~ 196 (215)
T cd08877 120 EENG-QIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPI-S-PTKCYLRFVANVDPKMSLVPKSLLNFV 196 (215)
T ss_pred ccCC-CEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEc-C-CCCeEEEEEEEcCCCcccCCHHHHHHH
Confidence 3333 33221 12110 111 124677788888987 3 778999999998888754555433 2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 048527 139 VLEMMINIVKNIDAYLI 155 (183)
Q Consensus 139 ~~~~~~~~~k~ie~yLl 155 (183)
.++++..+++.+.+.+.
T Consensus 197 ~k~~~~~~~~~l~k~~~ 213 (215)
T cd08877 197 ARKFAGLLFEKIQKAAK 213 (215)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56666677777766543
No 50
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=95.21 E-value=1.4 Score=35.83 Aligned_cols=143 Identities=9% Similarity=0.053 Sum_probs=75.8
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCc-ccccccCCceeeEEEEcCCCCCCccEEEEEEeec-C--CCc-eEEE-EEEEEeeCC
Q 048527 7 LEAVIEVKASADKVHEVFSCRPH-IVTSISPQSVQSCELIEGEWGRPGAVICWTFTRY-A--GNP-QIVK-ELIEVVDNE 80 (183)
Q Consensus 7 v~~ev~i~apadkvW~~~~d~~~-~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~-~--g~~-~~~k-Erl~~iD~~ 80 (183)
+..+..++++++++++.+.|..+ .-++|-+ .+.++++++--.+...-++. ....+ . ... ..+- ......++.
T Consensus 48 ~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~-~~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d~ 125 (208)
T cd08903 48 YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQ-NVKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYEDG 125 (208)
T ss_pred EEEEEEecCCHHHHHHHHHhccchhhhhhhh-ccccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCCc
Confidence 67888999999999999986533 2379998 57888887653122221222 11101 0 011 1221 222223333
Q ss_pred CcEEEEEEEecccce-----eee-EE-EEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHH
Q 048527 81 NYITIFKLIEGNVLE-----MLY-KS-FYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLES-K-VLEMMINIVKNID 151 (183)
Q Consensus 81 ~~~~~Y~iieG~~l~-----~~~-~s-y~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~-~-~~~~~~~~~k~ie 151 (183)
...+.+...+-+.++ ... .. +...++..|. + +++|.++|.+..+++| ..|..-. . ..+....+++.+.
T Consensus 126 ~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~-~-~~~t~v~~~~~~DpkG-~iP~~lvn~~~~~~~~~~~~~Lr 202 (208)
T cd08903 126 TISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPG-E-PDKTQLVSFFQTDLSG-YLPQTVVDSFFPASMAEFYNNLT 202 (208)
T ss_pred eEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCC-C-CCceEEEEEEEeccCC-CcCHHHHHHHhhHHHHHHHHHHH
Confidence 344444344442221 011 11 2334444453 2 5689999999999986 3554332 2 2344456666666
Q ss_pred HHH
Q 048527 152 AYL 154 (183)
Q Consensus 152 ~yL 154 (183)
.+|
T Consensus 203 ~~~ 205 (208)
T cd08903 203 KAV 205 (208)
T ss_pred HHH
Confidence 665
No 51
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=95.20 E-value=1.6 Score=36.56 Aligned_cols=147 Identities=12% Similarity=0.104 Sum_probs=84.7
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeec-CCCce-EEEEEEEE--eeCCC
Q 048527 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRY-AGNPQ-IVKELIEV--VDNEN 81 (183)
Q Consensus 6 ~v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~-~g~~~-~~kErl~~--iD~~~ 81 (183)
.+..+..+++|++++|+++.|.. ..++|.+ ...++++++--+...+ +-.+.+..+ -.+.+ .+-.+-.. .+...
T Consensus 78 ~fk~e~~vd~s~~~v~dlL~D~~-~R~~WD~-~~~e~evI~~id~d~~-iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~~ 154 (235)
T cd08873 78 SFCVELKVQTCASDAFDLLSDPF-KRPEWDP-HGRSCEEVKRVGEDDG-IYHTTMPSLTSEKPNDFVLLVSRRKPATDGD 154 (235)
T ss_pred EEEEEEEecCCHHHHHHHHhCcc-hhhhhhh-cccEEEEEEEeCCCcE-EEEEEcCCCCCCCCceEEEEEEEEeccCCCC
Confidence 46788889999999999999875 4799998 5888999874211222 233333311 11112 22222221 22222
Q ss_pred -cEEEEEEEecccce-----eeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchHH-HHHHHHHHHHHHHHHH
Q 048527 82 -YITIFKLIEGNVLE-----MLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLESK-VLEMMINIVKNIDAYL 154 (183)
Q Consensus 82 -~~~~Y~iieG~~l~-----~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~~-~~~~~~~~~k~ie~yL 154 (183)
..+...-+.-+..+ ....++.+-+.+.|. + +++|.|+.....+|.--.--.-+.. .-..+...|+.-+.||
T Consensus 155 ~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~-~-~~~t~VtY~~~~dPg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (235)
T cd08873 155 PYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQD-C-GTCTEVSYYNETNPKLLSYVTCNLAGLSALYCRTFHCCEQFL 232 (235)
T ss_pred eEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEEC-C-CCcEEEEEEEEcCCCccceeeecchhhhHHHHHHHHHHHHHh
Confidence 33333333311111 256788899999997 3 6789999888887752100011111 3344567788888888
Q ss_pred hhC
Q 048527 155 IQH 157 (183)
Q Consensus 155 l~~ 157 (183)
..|
T Consensus 233 ~~~ 235 (235)
T cd08873 233 VTN 235 (235)
T ss_pred ccC
Confidence 764
No 52
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=95.20 E-value=1.4 Score=35.86 Aligned_cols=152 Identities=9% Similarity=0.058 Sum_probs=88.0
Q ss_pred EEEEEEE-cCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecC-CCc-eEEEEEEEEeeCCCcE
Q 048527 7 LEAVIEV-KASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYA-GNP-QIVKELIEVVDNENYI 83 (183)
Q Consensus 7 v~~ev~i-~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~-g~~-~~~kErl~~iD~~~~~ 83 (183)
+..+..+ ++|++.+++++.|. ...++|-|. +..+++++-- +.--.|....+..+- ... ..+--|...-++....
T Consensus 49 ~k~~~~~~~~s~e~~~~~l~D~-~~r~~Wd~~-~~e~~~ie~~-d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~v 125 (222)
T cd08871 49 IKVSAIFPDVPAETLYDVLHDP-EYRKTWDSN-MIESFDICQL-NPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEYI 125 (222)
T ss_pred EEEEEEeCCCCHHHHHHHHHCh-hhhhhhhhh-hceeEEEEEc-CCCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEEE
Confidence 4556666 69999999999875 557899985 6566666542 111233334443111 111 2222232222332222
Q ss_pred EEEEEEecccce-----eeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHHhh
Q 048527 84 TIFKLIEGNVLE-----MLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLES-K-VLEMMINIVKNIDAYLIQ 156 (183)
Q Consensus 84 ~~Y~iieG~~l~-----~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~-~-~~~~~~~~~k~ie~yLl~ 156 (183)
+...-++-+..+ .....+.+-+.+.|. + +++|.++|.+..++.|. .|.--. . +......+++.+...+..
T Consensus 126 i~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~-~-~~~t~vt~~~~~Dp~G~-IP~~lvN~~~~~~~~~~l~~l~k~~~~ 202 (222)
T cd08871 126 IFNHSVKHKKYPPRKGFVRAISLLTGYLIRPT-G-PKGCTLTYVTQNDPKGS-LPKWVVNKATTKLAPKVMKKLHKAALK 202 (222)
T ss_pred EEeccccCCCCCCCCCeEEeEEEccEEEEEEC-C-CCCEEEEEEEecCCCCC-cCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 211112211111 133456667778886 3 67899999999998874 444322 2 455567889999999999
Q ss_pred Cccccccc
Q 048527 157 HEEARADD 164 (183)
Q Consensus 157 ~~~~~a~~ 164 (183)
-++.++..
T Consensus 203 y~~~~~~~ 210 (222)
T cd08871 203 YPEWKAKN 210 (222)
T ss_pred HHHHHHhc
Confidence 89887665
No 53
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=93.77 E-value=2.4 Score=32.53 Aligned_cols=139 Identities=14% Similarity=0.115 Sum_probs=77.1
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCc---eEEEEEEEEeeCCCc
Q 048527 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNP---QIVKELIEVVDNENY 82 (183)
Q Consensus 6 ~v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~---~~~kErl~~iD~~~~ 82 (183)
.+..+.++++|++++|.++.|. ...++|-| .+.++++++-. +..-.+....+. ...+. ..+--+-...++++.
T Consensus 40 ~~k~~~~i~~~~~~v~~~l~d~-~~~~~w~~-~~~~~~vl~~~-~~~~~i~~~~~~-~p~p~~~Rdfv~~~~~~~~~~~~ 115 (193)
T cd00177 40 LLKAEGVIPASPEQVFELLMDI-DLRKKWDK-NFEEFEVIEEI-DEHTDIIYYKTK-PPWPVSPRDFVYLRRRRKLDDGT 115 (193)
T ss_pred eEEEEEEECCCHHHHHHHHhCC-chhhchhh-cceEEEEEEEe-CCCeEEEEEEee-CCCccCCccEEEEEEEEEcCCCe
Confidence 4667889999999999999985 45789998 58888888764 222344454554 22211 112112122233222
Q ss_pred -EEEEEEEecccce-----eeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHH
Q 048527 83 -ITIFKLIEGNVLE-----MLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLES-K-VLEMMINIVKNID 151 (183)
Q Consensus 83 -~~~Y~iieG~~l~-----~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~-~-~~~~~~~~~k~ie 151 (183)
.+...=++.+..+ .....+.+-+.+.|. + +++|.+++....++.+. .|..-. . ..+....+.|.+.
T Consensus 116 ~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~-~-~~~~~vt~~~~~D~~g~-iP~~~~~~~~~~~~~~~~~~~~ 189 (193)
T cd00177 116 YVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPL-D-PGKTKVTYVLQVDPKGS-IPKSLVNSAAKKQLASFLKDLR 189 (193)
T ss_pred EEEEEeecCCCCCCCCCCcEEEEEEccEEEEEEC-C-CCCEEEEEEEeeCCCCC-ccHHHHHhhhhhccHHHHHHHH
Confidence 2222222221111 112233455677886 4 77899999999999874 444322 2 3333344444443
No 54
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=93.61 E-value=2.7 Score=32.58 Aligned_cols=111 Identities=16% Similarity=0.136 Sum_probs=62.2
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCcc--cccccCC---ceeeEEEEcCCCCCCccEEEE-EEeecCCC--------ceEEEE
Q 048527 7 LEAVIEVKASADKVHEVFSCRPHI--VTSISPQ---SVQSCELIEGEWGRPGAVICW-TFTRYAGN--------PQIVKE 72 (183)
Q Consensus 7 v~~ev~i~apadkvW~~~~d~~~~--lpk~~P~---~v~s~e~~eGd~g~~GsvR~~-t~~~~~g~--------~~~~kE 72 (183)
++.++++++|+++||++|.|-.-. .-+-+.. .+.+++ .+|+ + -+++.- .+....-| ..-.-+
T Consensus 1 f~~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~-~~~~--g-~~v~~~~~v~~~~lP~~~~k~v~~~l~v~ 76 (159)
T PF10698_consen 1 FEHSVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFE-VDGD--G-VRVTVRQTVPADKLPSAARKFVGGDLRVT 76 (159)
T ss_pred CeEEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEE-EcCC--e-EEEEEEEecChhhCCHHHHHhcCCCeEEE
Confidence 357889999999999999964221 1122221 233333 2333 2 111111 12200111 011222
Q ss_pred EEEEe---eCCCcEEEEEEEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEec
Q 048527 73 LIEVV---DNENYITIFKLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERK 128 (183)
Q Consensus 73 rl~~i---D~~~~~~~Y~iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~ 128 (183)
|.+.+ ++..++.+|++--.+. --+..+++.+.|. +++|.+.++.+....
T Consensus 77 ~~e~w~~~~~g~~~g~~~~~~~G~----P~~~~G~~~L~~~---~~gt~~~~~g~v~v~ 128 (159)
T PF10698_consen 77 RTETWTPLDDGRRTGTFTVSIPGA----PVSISGTMRLRPD---GGGTRLTVEGEVKVK 128 (159)
T ss_pred EEEEEecCCCCeEEEEEEEEecCc----eEEEEEEEEEecC---CCCEEEEEEEEEEEE
Confidence 33444 6677777777643222 2378899999995 778999999999876
No 55
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=92.37 E-value=5.2 Score=32.54 Aligned_cols=144 Identities=9% Similarity=0.033 Sum_probs=74.1
Q ss_pred eEEEEEEEEcCCHHHHH-HHHhcCCcccccccCCceeeEEEEcCCCCCCcc--EEEEEEeecCCCc---eEEEEEEEEee
Q 048527 5 GELEAVIEVKASADKVH-EVFSCRPHIVTSISPQSVQSCELIEGEWGRPGA--VICWTFTRYAGNP---QIVKELIEVVD 78 (183)
Q Consensus 5 ~~v~~ev~i~apadkvW-~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~Gs--vR~~t~~~~~g~~---~~~kErl~~iD 78 (183)
..+..+..+++|++++| .++.|. ...++|.+ .+.++++++-- + ..+ ++.++....+++. -.+-.|--.-+
T Consensus 49 ~~fk~~~~v~~~~~~l~~~ll~D~-~~~~~W~~-~~~~~~vi~~~-~-~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~ 124 (209)
T cd08906 49 KTFILKAFMQCPAELVYQEVILQP-EKMVLWNK-TVSACQVLQRV-D-DNTLVSYDVAAGAAGGVVSPRDFVNVRRIERR 124 (209)
T ss_pred cEEEEEEEEcCCHHHHHHHHHhCh-hhccccCc-cchhhhheeec-c-CCcEEEEEEccccccCCCCCCceEEEEEEEec
Confidence 34678889999999998 567776 45799999 48888887553 1 122 1122221001221 22333333233
Q ss_pred CCCcE-EEEEEEecccce-----eeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHH
Q 048527 79 NENYI-TIFKLIEGNVLE-----MLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLES-K-VLEMMINIVKNI 150 (183)
Q Consensus 79 ~~~~~-~~Y~iieG~~l~-----~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~-~-~~~~~~~~~k~i 150 (183)
.+... +..++ .-+.++ ....++.+-+-+.|.+.++++|.++|.+..++.|. .|..-. . ..+.....++.+
T Consensus 125 ~~~~i~~~~sv-~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~-lP~~lvN~~~~~~~~~~~~~L 202 (209)
T cd08906 125 RDRYVSAGIST-THSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGR-LPRYLIHQSLAATMFEFASHL 202 (209)
T ss_pred CCcEEEEEEEE-ecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 34422 22222 222222 11221222233333101266899999999999983 454322 2 344445555555
Q ss_pred HHHH
Q 048527 151 DAYL 154 (183)
Q Consensus 151 e~yL 154 (183)
-++|
T Consensus 203 R~~~ 206 (209)
T cd08906 203 RQRI 206 (209)
T ss_pred HHHH
Confidence 5554
No 56
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=92.22 E-value=6.1 Score=33.08 Aligned_cols=117 Identities=14% Similarity=0.072 Sum_probs=66.6
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCC--ce-EEEEEEEEeeCCCc
Q 048527 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGN--PQ-IVKELIEVVDNENY 82 (183)
Q Consensus 6 ~v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~--~~-~~kErl~~iD~~~~ 82 (183)
.+..+..+++|++++++++.|.. ..++|.+ .+.++++++--...- .+..++-....++ .+ .+-.+-..-+.++.
T Consensus 82 ~fK~e~~vd~s~e~v~~lL~D~~-~r~~Wd~-~~~e~~vIe~id~~~-~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g 158 (240)
T cd08913 82 SFKVEMVVHVDAAQAFLLLSDLR-RRPEWDK-HYRSCELVQQVDEDD-AIYHVTSPSLSGHGKPQDFVILASRRKPCDNG 158 (240)
T ss_pred EEEEEEEEcCCHHHHHHHHhChh-hhhhhHh-hccEEEEEEecCCCc-EEEEEecCCCCCCCCCCeEEEEEEEEeccCCC
Confidence 45677899999999999998874 5799998 588888876531222 2444442201112 11 22221111222222
Q ss_pred ---EEEEEEEecccce-----eeeEEEEEEEEEEeeeCCCCceEEEEEEEEEe
Q 048527 83 ---ITIFKLIEGNVLE-----MLYKSFYSVAKVTQKDDHEGGSLVRFTYKYER 127 (183)
Q Consensus 83 ---~~~Y~iieG~~l~-----~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~ 127 (183)
.+..+.+.-+-.+ ....++.+-+.+.|. + +++|.+++...-+|
T Consensus 159 ~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~-~-~~~t~vtY~~~~dP 209 (240)
T cd08913 159 DPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEE-S-DQLTKVSYYNQATP 209 (240)
T ss_pred ccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEEC-C-CCcEEEEEEEEeCC
Confidence 2323322222121 245667788889886 3 67899988665555
No 57
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=90.68 E-value=7.7 Score=31.26 Aligned_cols=146 Identities=13% Similarity=0.129 Sum_probs=81.6
Q ss_pred EEEEEEEE-cCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCcc-EEEEEEeec--CCCceEEEEEEEEee-CC
Q 048527 6 ELEAVIEV-KASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGA-VICWTFTRY--AGNPQIVKELIEVVD-NE 80 (183)
Q Consensus 6 ~v~~ev~i-~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~Gs-vR~~t~~~~--~g~~~~~kErl~~iD-~~ 80 (183)
.+....++ ++|++.+++++.|. ...++|.+. +..+++++-+ +..|+ |-.+.+..+ =.+..++-.|-.-.| +.
T Consensus 51 ~~k~~~~~~~~s~~~~~~~l~D~-~~r~~Wd~~-~~~~~~le~~-~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~ 127 (209)
T cd08870 51 EYLVRGVFEDCTPELLRDFYWDD-EYRKKWDET-VIEHETLEED-EKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDR 127 (209)
T ss_pred EEEEEEEEcCCCHHHHHHHHcCh-hhHhhhhhh-eeeEEEEEec-CCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCC
Confidence 45667777 67999999999986 457999985 6667776655 22122 222222211 011123433333233 33
Q ss_pred CcEEEEEEEecccc----eeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHH
Q 048527 81 NYITIFKLIEGNVL----EMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLES-K-VLEMMINIVKNIDAYL 154 (183)
Q Consensus 81 ~~~~~Y~iieG~~l----~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~-~-~~~~~~~~~k~ie~yL 154 (183)
...+....+.-+.. ...+..|.+.+.+.|...++++|.+.++..-++.+ ..|.--. . ....+.++++.+...+
T Consensus 128 ~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G-~IP~wlvN~~~~~~~~~~l~~l~~a~ 206 (209)
T cd08870 128 SYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDG-GIPRELAKLAVKRGMPGFLKKLENAL 206 (209)
T ss_pred EEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCC-CCCHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33333322222111 12578899999998852125678888888777754 3443322 2 4555567777777766
Q ss_pred h
Q 048527 155 I 155 (183)
Q Consensus 155 l 155 (183)
+
T Consensus 207 ~ 207 (209)
T cd08870 207 R 207 (209)
T ss_pred h
Confidence 4
No 58
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=90.28 E-value=8.5 Score=31.09 Aligned_cols=146 Identities=14% Similarity=0.197 Sum_probs=81.2
Q ss_pred EEEEEEEE-cCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCcc-EEEEEEeecC--CCceEEEEEEEEeeCCC
Q 048527 6 ELEAVIEV-KASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGA-VICWTFTRYA--GNPQIVKELIEVVDNEN 81 (183)
Q Consensus 6 ~v~~ev~i-~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~Gs-vR~~t~~~~~--g~~~~~kErl~~iD~~~ 81 (183)
.+..+.++ ++|++.+.+++.|. ...++|.+ .+.++++++-+ ...++ |-.+.+..+- .+..++-.|-...|+++
T Consensus 46 ~~k~~~~~~d~s~~~~~~~~~D~-~~r~~Wd~-~~~~~~~le~~-~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~ 122 (207)
T cd08911 46 EYKVYGSFDDVTARDFLNVQLDL-EYRKKWDA-TAVELEVVDED-PETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEEN 122 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHhCH-HHHHHHHh-hheeEEEEEcc-CCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCC
Confidence 35565666 99999999999986 55799998 47777888764 22232 2233333110 01124544544566665
Q ss_pred cEE--EEEEEecccc-----eeeeEEEEEEEEEEeeeC-CCCceEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHH
Q 048527 82 YIT--IFKLIEGNVL-----EMLYKSFYSVAKVTQKDD-HEGGSLVRFTYKYERKNENVPDLES-K-VLEMMINIVKNID 151 (183)
Q Consensus 82 ~~~--~Y~iieG~~l-----~~~~~sy~~ti~v~p~~~-~~~gs~v~Wt~~ye~~~~~~p~~~~-~-~~~~~~~~~k~ie 151 (183)
..+ ...-++-+-. -....+|.+.+.+.|... +++||.+.++..-++.+ ..|.--. . +.....++++.+.
T Consensus 123 ~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPgG-~IP~~lvN~~~~~~~~~~l~~l~ 201 (207)
T cd08911 123 KLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPGV-NIPSYITSWVAMSGMPDFLERLR 201 (207)
T ss_pred CEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCCC-ccCHHHHHHHHHhhccHHHHHHH
Confidence 442 1111221110 036778999999988510 13578777655544443 3443222 2 4555567777777
Q ss_pred HHHh
Q 048527 152 AYLI 155 (183)
Q Consensus 152 ~yLl 155 (183)
..++
T Consensus 202 ~a~~ 205 (207)
T cd08911 202 NAAL 205 (207)
T ss_pred HHHh
Confidence 6654
No 59
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=88.62 E-value=10 Score=29.82 Aligned_cols=145 Identities=14% Similarity=0.046 Sum_probs=80.5
Q ss_pred EEEEEEEEcCCHHHHH-HHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCc---eEEEE-EEEEeeCC
Q 048527 6 ELEAVIEVKASADKVH-EVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNP---QIVKE-LIEVVDNE 80 (183)
Q Consensus 6 ~v~~ev~i~apadkvW-~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~---~~~kE-rl~~iD~~ 80 (183)
.+..+..+.+++++++ .++.|. ...++|.|. +..+++++-- ..-..|..+.+..+-++. ..+-- +.....+.
T Consensus 46 ~~k~~~~v~~~~~~~~~~~~~d~-~~r~~Wd~~-~~~~~~ie~~-~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~ 122 (206)
T smart00234 46 ASRAVGVVPMVCADLVEELMDDL-RYRPEWDKN-VAKAETLEVI-DNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDG 122 (206)
T ss_pred EEEEEEEEecChHHHHHHHHhcc-cchhhCchh-cccEEEEEEE-CCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCC
Confidence 5667888999999866 455454 557999984 7777776543 111345554443111121 12211 22222233
Q ss_pred CcEEEEEEEecccce-----eeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHH
Q 048527 81 NYITIFKLIEGNVLE-----MLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLES-K-VLEMMINIVKNIDAY 153 (183)
Q Consensus 81 ~~~~~Y~iieG~~l~-----~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~-~-~~~~~~~~~k~ie~y 153 (183)
...+...-++.+-.+ .....+.+-+.+.|. + ++.|.++|....++.+. .|..-. . +......+++.+-++
T Consensus 123 ~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~-~-~~~t~vt~~~~~D~~G~-iP~~lvn~~~~~~~~~~~~~~~~~ 199 (206)
T smart00234 123 SYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPL-G-NGPSKVTWVSHADLKGW-LPHWLVRSLIKSGLAEFAKTWVAT 199 (206)
T ss_pred cEEEEEEECCCCCCCCCCCceEEEEeceEEEEEEC-C-CCCeEEEEEEEEecCCC-ccceeehhhhhhhHHHHHHHHHHH
Confidence 334433333322111 234567788888886 3 56799999999999874 444322 1 444555666666666
Q ss_pred Hhh
Q 048527 154 LIQ 156 (183)
Q Consensus 154 Ll~ 156 (183)
|..
T Consensus 200 ~~~ 202 (206)
T smart00234 200 LQK 202 (206)
T ss_pred HHH
Confidence 543
No 60
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=86.46 E-value=15 Score=29.35 Aligned_cols=144 Identities=11% Similarity=0.037 Sum_probs=75.5
Q ss_pred EEEEEEEEcCCHHHHHHHHhcC-CcccccccCCceeeEEEEcCCCCCCccEEEEEEeecC---C--Cce-EE-EEEEEEe
Q 048527 6 ELEAVIEVKASADKVHEVFSCR-PHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYA---G--NPQ-IV-KELIEVV 77 (183)
Q Consensus 6 ~v~~ev~i~apadkvW~~~~d~-~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~---g--~~~-~~-kErl~~i 77 (183)
.+..+..++++++++++.+.|. ....++|-+ .+..+++++.- + ..+ ..+.+..+. + ..+ .+ ......+
T Consensus 47 ~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~-~~~~~~~le~i-d-~~~-~i~~~~~p~~~~~~vs~RDfV~~~~~~~~ 122 (206)
T cd08867 47 LYRAEGIVDALPEKVIDVIIPPCGGLRLKWDK-SLKHYEVLEKI-S-EDL-CVGRTITPSAAMGLISPRDFVDLVYVKRY 122 (206)
T ss_pred EEEEEEEEcCCHHHHHHHHHhcCccccccccc-cccceEEEEEe-C-CCe-EEEEEEccccccCccCCcceEEEEEEEEe
Confidence 3678899999999999999872 244689998 48888888764 2 122 222222111 1 111 11 1111223
Q ss_pred eCCCcEEEEEEEecccce-----eeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHH
Q 048527 78 DNENYITIFKLIEGNVLE-----MLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLES-K-VLEMMINIVKNI 150 (183)
Q Consensus 78 D~~~~~~~Y~iieG~~l~-----~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~-~-~~~~~~~~~k~i 150 (183)
++....+...-++-+..+ ..-..+.+-+-+.|.+.++++|.++|.+..++.|. .|.--- . ..+....+++.+
T Consensus 123 ~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~-iP~~lvn~~~~~~~~~~~~~l 201 (206)
T cd08867 123 EDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGM-IPQSLVESAMPSNLVNFYTDL 201 (206)
T ss_pred CCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCC-CcHHHHHhhhhhhHHHHHHHH
Confidence 332232333333222211 12233344445565411145799999999999974 443322 1 334445666666
Q ss_pred HHHH
Q 048527 151 DAYL 154 (183)
Q Consensus 151 e~yL 154 (183)
-.+|
T Consensus 202 r~~~ 205 (206)
T cd08867 202 VKGV 205 (206)
T ss_pred HHhc
Confidence 5554
No 61
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=86.17 E-value=14 Score=28.65 Aligned_cols=140 Identities=14% Similarity=0.103 Sum_probs=81.4
Q ss_pred eEEEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCc-eEEEEEEEE--eeCCC
Q 048527 5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNP-QIVKELIEV--VDNEN 81 (183)
Q Consensus 5 ~~v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~-~~~kErl~~--iD~~~ 81 (183)
|++.....|++|.+-||+....- +.+..+-|..+ +-+-+|+.-+.|+-....+..-+-++ ...+-|+++ +|+ -
T Consensus 2 ~tF~~~~~i~aP~E~VWafhsrp-d~lq~LTppw~--VV~p~g~eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~-~ 77 (153)
T COG4276 2 GTFVYRTTITAPHEMVWAFHSRP-DALQRLTPPWI--VVLPLGSEITQGTRIAMGLTPFGLPAGLTWVARHTESGFDN-G 77 (153)
T ss_pred cceEEeeEecCCHHHHhhhhcCc-cHHHhcCCCcE--EeccCCCcccceeeeeecceeecCCCCceEEEEeeecccCC-c
Confidence 67788999999999999998765 44556666433 33335542334443333222012211 466777776 543 3
Q ss_pred cEEEEEEEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHH
Q 048527 82 YITIFKLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLES-K-VLEMMINIVKNIDAYL 154 (183)
Q Consensus 82 ~~~~Y~iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~-~-~~~~~~~~~k~ie~yL 154 (183)
.+++=..+.|++. --+..-+-++.+. +|+++..=.+.|+...+....-.. . ..-....||+.-+.-|
T Consensus 78 ~~FtDv~i~gPfp---~~~WrHtH~F~~e---gg~TvliD~Vsye~p~g~~~~~~g~~l~q~~l~~mFr~Rhs~l 146 (153)
T COG4276 78 SRFTDVCITGPFP---ALNWRHTHNFVDE---GGGTVLIDSVSYELPAGTLTGMFGYRLTQLILDLMFRSRHSTL 146 (153)
T ss_pred ceeeeeeecCCcc---ceeeEEEeeeecC---CCcEEEEeeEEeeccCcceechhhhhhHHHHHHHHHHHHHHHH
Confidence 3455556777763 3356777888885 678999999999976542211111 1 2333356665544433
No 62
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=84.21 E-value=23 Score=29.42 Aligned_cols=142 Identities=11% Similarity=0.085 Sum_probs=78.2
Q ss_pred EEEEEEEEc-CCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCcc-EEEEEEeecCCC---ceE-EEEEEEEeeC
Q 048527 6 ELEAVIEVK-ASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGA-VICWTFTRYAGN---PQI-VKELIEVVDN 79 (183)
Q Consensus 6 ~v~~ev~i~-apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~Gs-vR~~t~~~~~g~---~~~-~kErl~~iD~ 79 (183)
.+..+.+++ ++++.+.+.|.|. ...++|.. .+.+.++++-. ..++ |-...+. .--| .-. ..-++...|+
T Consensus 53 ~~Ka~~~v~~vt~~~~~~~l~D~-~~r~~Wd~-~~~~~~vie~l--~~~~~I~Y~~~k-~PwPvs~RD~V~~~~~~~~~d 127 (235)
T cd08872 53 PLKATHAVKGVTGHEVCHYFFDP-DVRMDWET-TLENFHVVETL--SQDTLIFHQTHK-RVWPAAQRDALFVSHIRKIPA 127 (235)
T ss_pred eEEEEEEECCCCHHHHHHHHhCh-hhHHHHHh-hhheeEEEEec--CCCCEEEEEEcc-CCCCCCCcEEEEEEEEEecCc
Confidence 366777888 9999999999886 45789998 57777776543 1122 2222222 1001 111 2222233333
Q ss_pred CC--------cEEEEEEEecccceeeeEEEEEE-----------------EEEEeeeCCCCceEEEEEEEEEecCCCCCC
Q 048527 80 EN--------YITIFKLIEGNVLEMLYKSFYSV-----------------AKVTQKDDHEGGSLVRFTYKYERKNENVPD 134 (183)
Q Consensus 80 ~~--------~~~~Y~iieG~~l~~~~~sy~~t-----------------i~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~ 134 (183)
.. -.+..++. -+-.+..-...++. +.++|. +++|.+++.+..+|.|. .|.
T Consensus 128 ~~~~~~~~~~vii~~Sv~-h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~---~~~~~ity~~~~dPgG~-iP~ 202 (235)
T cd08872 128 LEEPNAHDTWIVCNFSVD-HDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITRD---NILCKITYVANVNPGGW-APA 202 (235)
T ss_pred cccccCCCeEEEEEeccc-CccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccCC---CCeEEEEEEEEeCCCCC-ccH
Confidence 21 22333332 22111010111121 123332 56799999998888874 555
Q ss_pred chH-H-HHHHHHHHHHHHHHHHhhC
Q 048527 135 LES-K-VLEMMINIVKNIDAYLIQH 157 (183)
Q Consensus 135 ~~~-~-~~~~~~~~~k~ie~yLl~~ 157 (183)
.-. . ++..+.+++|.+.+|++.+
T Consensus 203 wvvn~~~k~~~P~~l~~~~~~~~~~ 227 (235)
T cd08872 203 SVLRAVYKREYPKFLKRFTSYVQEK 227 (235)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHh
Confidence 433 3 6777799999999999865
No 63
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=83.98 E-value=20 Score=28.64 Aligned_cols=121 Identities=13% Similarity=0.060 Sum_probs=69.5
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecC-CCc-eEEEEEEEEeeCCC--
Q 048527 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYA-GNP-QIVKELIEVVDNEN-- 81 (183)
Q Consensus 6 ~v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~-g~~-~~~kErl~~iD~~~-- 81 (183)
.+..+.++++++++++..+.+. -++|.+. +.++++++-- +.--.|-...+..+. .+. ..+--|.-..|.++
T Consensus 45 ~~K~~~~v~a~~~~v~~~l~d~---r~~Wd~~-~~~~~vie~i-d~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~ 119 (197)
T cd08869 45 LWRASTEVEAPPEEVLQRILRE---RHLWDDD-LLQWKVVETL-DEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGA 119 (197)
T ss_pred EEEEEEEeCCCHHHHHHHHHHH---Hhccchh-hheEEEEEEe-cCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCc
Confidence 3578899999999999988764 3899985 7777776553 111122223333111 111 23333333333333
Q ss_pred cEEEEEEEec-ccc--e-eeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCC
Q 048527 82 YITIFKLIEG-NVL--E-MLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPD 134 (183)
Q Consensus 82 ~~~~Y~iieG-~~l--~-~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~ 134 (183)
..+...-++- +.. + .....+.+-+.++|. + +++|.+++.+..++.|. .|.
T Consensus 120 ~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~-~-~~~t~vty~~~~Dp~G~-iP~ 173 (197)
T cd08869 120 CVLVETSVEHTEPVPLGGVRAVVLASRYLIEPC-G-SGKSRVTHICRVDLRGR-SPE 173 (197)
T ss_pred EEEEEECCcCCCCCCCCCEEEEEEeeeEEEEEC-C-CCCeEEEEEEEECCCCC-CCc
Confidence 3333332321 111 1 124566778888996 3 67899999999999874 443
No 64
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=77.95 E-value=0.56 Score=30.80 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=25.6
Q ss_pred HHHHHHHHhhCccccccccce-eeeeecCccccc
Q 048527 147 VKNIDAYLIQHEEARADDTDQ-VLLVNVNSQEIE 179 (183)
Q Consensus 147 ~k~ie~yLl~~~~~~a~~~~~-~~~~~~~~~~~~ 179 (183)
.+.|=.||+.||++..+.-+. .-|++++++|..
T Consensus 2 ~Q~iV~YLv~nPevl~kl~~g~asLIGv~~~e~~ 35 (57)
T PF05952_consen 2 KQEIVNYLVQNPEVLEKLKEGEASLIGVDKDEQK 35 (57)
T ss_pred hHHHHHHHHHChHHHHHHHcCCeeEecCCHHHHH
Confidence 467789999999998877654 568888887753
No 65
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=74.23 E-value=51 Score=27.62 Aligned_cols=116 Identities=14% Similarity=0.083 Sum_probs=66.0
Q ss_pred eEEEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeec--CCCce-EEEEEE-EEeeCC
Q 048527 5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRY--AGNPQ-IVKELI-EVVDNE 80 (183)
Q Consensus 5 ~~v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~--~g~~~-~~kErl-~~iD~~ 80 (183)
..+..+..+++|++++++++.|.. ..++|.+. ..++++++--...- .|..++-. + ..+.+ .+..+- ....++
T Consensus 78 l~fk~e~~vdvs~~~l~~LL~D~~-~r~~Wd~~-~~e~~vI~qld~~~-~vY~~~~p-Pw~Pvk~RD~V~~~s~~~~~~d 153 (236)
T cd08914 78 LSVWVEKHVKRPAHLAYRLLSDFT-KRPLWDPH-FLSCEVIDWVSEDD-QIYHITCP-IVNNDKPKDLVVLVSRRKPLKD 153 (236)
T ss_pred EEEEEEEEEcCCHHHHHHHHhChh-hhchhHHh-hceEEEEEEeCCCc-CEEEEecC-CCCCCCCceEEEEEEEEecCCC
Confidence 357788899999999999999985 57999994 77888876531122 26665422 1 11112 222111 111212
Q ss_pred C--cEEEEEEEecccce-----eeeEE-EEEEEEEEeeeCCCCceEEEEEEEEEe
Q 048527 81 N--YITIFKLIEGNVLE-----MLYKS-FYSVAKVTQKDDHEGGSLVRFTYKYER 127 (183)
Q Consensus 81 ~--~~~~Y~iieG~~l~-----~~~~s-y~~ti~v~p~~~~~~gs~v~Wt~~ye~ 127 (183)
+ ..+.-.-+.-+.++ ....+ +.+- .+.|. + +++|.|+..+.-+|
T Consensus 154 g~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl-~-~~~~~VtY~~~~dP 205 (236)
T cd08914 154 GNTYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAI-D-SNSCTVSYFNQISA 205 (236)
T ss_pred CCEEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEc-C-CCcEEEEEEEEcCC
Confidence 3 32222222221111 23455 3444 77886 3 67899999998888
No 66
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=70.86 E-value=54 Score=26.42 Aligned_cols=142 Identities=15% Similarity=0.079 Sum_probs=76.7
Q ss_pred EEEEEEEEc-CCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecC--CCceEE-EEEEEEeeCCC
Q 048527 6 ELEAVIEVK-ASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYA--GNPQIV-KELIEVVDNEN 81 (183)
Q Consensus 6 ~v~~ev~i~-apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~--g~~~~~-kErl~~iD~~~ 81 (183)
.+..+.+++ ++++.+++++.|. ...++|.+... ++.-.+.+ + -.|-.+.+..+= .+...+ ..+...+|.++
T Consensus 50 ~~k~~~~~~~~s~~~~~~~l~D~-~~r~~Wd~~~~-~~~~~~~~-~--~~i~y~~~k~PwPvs~RD~V~~r~~~~~~~~~ 124 (207)
T cd08910 50 EYKVFGVLEDCSPSLLADVYMDL-EYRKQWDQYVK-ELYEKECD-G--ETVIYWEVKYPFPLSNRDYVYIRQRRDLDVEG 124 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHhCH-HHHHHHHHHHH-hheeecCC-C--CEEEEEEEEcCCCCCCceEEEEEEeccccCCC
Confidence 456677887 7999999999885 45789998644 33211222 1 123333333100 001122 21223445444
Q ss_pred cEEEE---EEEecccce-----eeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHH
Q 048527 82 YITIF---KLIEGNVLE-----MLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLES-K-VLEMMINIVKNID 151 (183)
Q Consensus 82 ~~~~Y---~iieG~~l~-----~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~-~-~~~~~~~~~k~ie 151 (183)
..+.. ..++-+-.+ ....+|.+.+.++|. + +++|.+++...-++.+ ..|.--. . .......+++.+.
T Consensus 125 ~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~-~-~~~t~i~~~~~~DPgG-~IP~wlvN~~~~~~~~~~l~~l~ 201 (207)
T cd08910 125 RKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESD-G-KKGSKVFMYYFDNPGG-MIPSWLINWAAKNGVPNFLKDMQ 201 (207)
T ss_pred CeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeC-C-CCceEEEEEEEeCCCC-cchHHHHHHHHHHhhHHHHHHHH
Confidence 32211 112211111 357789999999986 3 6679888888877765 3443322 2 4555566777766
Q ss_pred HHHh
Q 048527 152 AYLI 155 (183)
Q Consensus 152 ~yLl 155 (183)
..++
T Consensus 202 ka~~ 205 (207)
T cd08910 202 KACQ 205 (207)
T ss_pred HHHh
Confidence 6543
No 67
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=66.50 E-value=60 Score=25.28 Aligned_cols=144 Identities=15% Similarity=0.103 Sum_probs=85.3
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCC--Cc---eEEEEEEEEe-eC
Q 048527 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAG--NP---QIVKELIEVV-DN 79 (183)
Q Consensus 6 ~v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g--~~---~~~kErl~~i-D~ 79 (183)
.+.....+++++++++..+.+... +|-+ .+..+++++-- ..-..|..+.+. .-. +. ..+--|...- .+
T Consensus 47 ~~k~~~~v~~~~~~~~~~~~~~~~---~Wd~-~~~~~~~le~~-~~~~~i~~~~~~-~~~~~p~~~RDfv~~~~~~~~~~ 120 (206)
T PF01852_consen 47 MFKAEGVVPASPEQVVEDLLDDRE---QWDK-MCVEAEVLEQI-DEDTDIVYFVMK-SPWPGPVSPRDFVFLRSWRKDED 120 (206)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGG---HHST-TEEEEEEEEEE-ETTEEEEEEEEE--CTTTTSSEEEEEEEEEEEECTT
T ss_pred EEEEEEEEcCChHHHHHHHHhhHh---hccc-chhhheeeeec-CCCCeEEEEEec-ccCCCCCCCcEEEEEEEEEEecc
Confidence 467788999999988888876532 8998 47788887652 122456665555 222 32 1222222222 33
Q ss_pred CCcEEEEEEEecccce------eeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHH
Q 048527 80 ENYITIFKLIEGNVLE------MLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPDLES-K-VLEMMINIVKNID 151 (183)
Q Consensus 80 ~~~~~~Y~iieG~~l~------~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~~~~-~-~~~~~~~~~k~ie 151 (183)
....+..+=++.+-.+ .....|.+-+.+.|. + ++.|.|++...-++.+. .|..-. . +......+++.+-
T Consensus 121 ~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~-~-~~~~~vt~~~~~D~~G~-iP~~~~n~~~~~~~~~~~~~~~ 197 (206)
T PF01852_consen 121 GTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPL-G-DGRTRVTYVSQVDPKGW-IPSWLVNMVVKSQPPNFLKNLR 197 (206)
T ss_dssp SEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEE-T-TCEEEEEEEEEEESSSS-SHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeeeccccccccccCcceeeeeeEeEEEEEc-c-CCCceEEEEEEECCCCC-ChHHHHHHHHHHhHHHHHHHHH
Confidence 3344444333322211 245677788889997 3 55699999999888873 443222 2 3455567777777
Q ss_pred HHHhhCc
Q 048527 152 AYLIQHE 158 (183)
Q Consensus 152 ~yLl~~~ 158 (183)
++|..+.
T Consensus 198 ~~~~~~~ 204 (206)
T PF01852_consen 198 KALKKQK 204 (206)
T ss_dssp HHHHHCC
T ss_pred HHHHHhc
Confidence 7776654
No 68
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=64.40 E-value=23 Score=27.22 Aligned_cols=41 Identities=20% Similarity=0.360 Sum_probs=29.7
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCC
Q 048527 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGE 48 (183)
Q Consensus 6 ~v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd 48 (183)
+++.++..+-+.+.+-.++.|..-.+|+++| .++.++ .+|+
T Consensus 2 ~~~~~i~t~H~~e~v~~ILSDP~F~lp~l~p-~ik~v~-~~~~ 42 (136)
T PF11485_consen 2 EIEIEIKTSHDIEVVLTILSDPEFVLPRLFP-PIKSVK-VEEN 42 (136)
T ss_dssp -EEEEEE-SS-HHHHHHHHT-HHHHHHHHST-TEEEEE--STT
T ss_pred eEEEEeccCCChHheEEEecCCccEecccCC-ceEEEE-ecCC
Confidence 3567888889999999999986557999999 588888 4444
No 69
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=37.34 E-value=2.3e+02 Score=23.07 Aligned_cols=119 Identities=8% Similarity=0.007 Sum_probs=68.4
Q ss_pred eEEEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeec-CCCc-eEEEEEEEEeeCCCc
Q 048527 5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRY-AGNP-QIVKELIEVVDNENY 82 (183)
Q Consensus 5 ~~v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~-~g~~-~~~kErl~~iD~~~~ 82 (183)
..+..+++++++++++...+-|. .++|.+. +...++++--.... -|-...+..+ ..+. ..+..|.-..|..+.
T Consensus 52 ~~~r~~~~i~a~~~~vl~~lld~---~~~Wd~~-~~e~~vIe~ld~~~-~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g 126 (204)
T cd08908 52 RLWRTTIEVPAAPEEILKRLLKE---QHLWDVD-LLDSKVIEILDSQT-EIYQYVQNSMAPHPARDYVVLRTWRTNLPKG 126 (204)
T ss_pred EEEEEEEEeCCCHHHHHHHHHhh---HHHHHHH-hhheEeeEecCCCc-eEEEEEccCCCCCCCcEEEEEEEEEEeCCCC
Confidence 35778999999999999999865 5789985 55555554421111 1111111101 1111 234444443344444
Q ss_pred EEEEEEE--ecccc---eeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCC
Q 048527 83 ITIFKLI--EGNVL---EMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNE 130 (183)
Q Consensus 83 ~~~Y~ii--eG~~l---~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~ 130 (183)
.+..... +-+.. ......+.+.+.++|. + +|+|.++..+..++.|.
T Consensus 127 ~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~-g-~g~t~vtyi~~~DPgG~ 177 (204)
T cd08908 127 ACALLATSVDHDRAPVAGVRVNVLLSRYLIEPC-G-SGKSKLTYMCRIDLRGH 177 (204)
T ss_pred eEEEEEeecCcccCCcCceEEEEEeeEEEEEEC-C-CCcEEEEEEEEeCCCCC
Confidence 3322222 11111 1245567778888997 3 67899999999999874
No 70
>PF11979 DUF3480: Domain of unknown function (DUF3480); InterPro: IPR022557 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 350 to 362 amino acids in length. This domain is found C-terminal to PF01363 from PFAM.
Probab=35.44 E-value=1.9e+02 Score=25.88 Aligned_cols=88 Identities=20% Similarity=0.215 Sum_probs=48.2
Q ss_pred EEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCC--CCchH-HHHHHHHHHHHHHHHHHhhCccccccc
Q 048527 88 LIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENV--PDLES-KVLEMMINIVKNIDAYLIQHEEARADD 164 (183)
Q Consensus 88 iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~--p~~~~-~~~~~~~~~~k~ie~yLl~~~~~~a~~ 164 (183)
=|+|-.|. .+.+++..-...-. ..+-.++||--|.-..+.. .+.+. +.-.++..+.++.=+.|..+-+..+.+
T Consensus 238 pIDg~sle-gv~s~ri~~~~~~~---~~~~~IRwTeVF~l~~~~~~~~~~~~~~~~~laE~IA~a~c~AL~PhL~lL~~~ 313 (356)
T PF11979_consen 238 PIDGKSLE-GVPSVRIFQGSEYK---ANGKIIRWTEVFFLQKDDDSNGPSDPSDHSRLAEQIAKACCAALCPHLKLLKEN 313 (356)
T ss_pred CCCCceec-Cceeeeecccceee---cCCeEEEEEEEEEEecCccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 35555554 55666653333333 3457899999998866533 22222 244455555666666666666665554
Q ss_pred cceee--eeecCccccc
Q 048527 165 TDQVL--LVNVNSQEIE 179 (183)
Q Consensus 165 ~~~~~--~~~~~~~~~~ 179 (183)
.=.++ -|++++|+.+
T Consensus 314 G~~kigLRvtld~d~Ve 330 (356)
T PF11979_consen 314 GMNKIGLRVTLDSDEVE 330 (356)
T ss_pred CCcEEEEEEEEchhHeE
Confidence 33333 3466666543
No 71
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=30.62 E-value=3.1e+02 Score=22.81 Aligned_cols=110 Identities=7% Similarity=0.016 Sum_probs=65.6
Q ss_pred EEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCCcEEEEEEE
Q 048527 10 VIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYITIFKLI 89 (183)
Q Consensus 10 ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~~~Y~ii 89 (183)
...+..+++.+|+++.+-. ...++.| ..++.++..-+. .-+.+-.+..+++.-. ....-+++ +++..++++ ..-
T Consensus 73 rrligysp~~my~vVS~V~-~Y~~FVP-wC~kS~V~~~~P-~~~~kA~LeVGFk~l~-E~y~S~Vt-~~~p~l~kt-~~~ 146 (227)
T KOG3177|consen 73 RRLIGYSPSEMYSVVSNVS-EYHEFVP-WCKKSDVTSRRP-SGPLKADLEVGFKPLD-ERYTSNVT-CVKPHLTKT-VCA 146 (227)
T ss_pred HhhhCCCHHHHHHHHHhHH-Hhhcccc-ceeccceeecCC-CCCceeeEEecCcccc-hhheeeeE-EecccceEE-eec
Confidence 3457899999999999764 3567888 456555554431 2234444544321100 22333433 445555433 234
Q ss_pred ecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecC
Q 048527 90 EGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKN 129 (183)
Q Consensus 90 eG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~ 129 (183)
+|.+ +......+++.|.++=.+.|.+...+.||-..
T Consensus 147 d~rL----F~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~S 182 (227)
T KOG3177|consen 147 DGRL----FNHLITIWSFKPGPNIPRTCTLDFSVSFEFKS 182 (227)
T ss_pred cccH----HHhhhheeeeccCCCCCCeEEEEEEEEEEehh
Confidence 5654 66778889999863114679999999999764
No 72
>cd00222 CollagenBindB Collagen-binding protein B domain, mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by the repetitive B region; the B region has one to four 23 kDa repeat units (B1-B4). The B repeat units have been suggested to serve as a `stalk' that projects the A region from the bacterial surface and thus facilitate bacterial adherence to collagen; each B repeat unit has two domains (D1 and D2) placed side-by-side; D1 and D2 have similar secondary structure and exhibit a unique inverse IgG-like domain fold.
Probab=30.58 E-value=87 Score=25.28 Aligned_cols=73 Identities=21% Similarity=0.163 Sum_probs=44.1
Q ss_pred EcCCHHHHHHHHhcCCcccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCCcEEEEEEEecc
Q 048527 13 VKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYITIFKLIEGN 92 (183)
Q Consensus 13 i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~~~Y~iieG~ 92 (183)
++.+..|+|+ |..+ .+..-|..|. +.|... |.. +...+++. .++.-.+.=.-|-.+|+....|.|++-|-+
T Consensus 3 ~~i~v~K~W~---d~~n-~~~~RP~sI~-v~L~~n--g~~-~~~~~~l~-~~n~W~~tf~~Lpkyd~~G~~i~YtV~E~~ 73 (187)
T cd00222 3 VNLSGTKIWD---DYDD-KFKKRPAKIS-VQLLAN--GEK-YVKIVTVT-KDNNWKYEFKDLPKYDNEGKKINYTVVEVQ 73 (187)
T ss_pred EEEEEEEEEC---CCCC-CCCCCCCEEE-EEEEeC--Cee-eeeEEEec-CCCCeEEEEcCCCcccCCCCEEEEEEEeec
Confidence 4455667776 3212 3455675454 666643 222 45666776 554333444566777888999999999977
Q ss_pred cc
Q 048527 93 VL 94 (183)
Q Consensus 93 ~l 94 (183)
+.
T Consensus 74 V~ 75 (187)
T cd00222 74 VP 75 (187)
T ss_pred CC
Confidence 64
No 73
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=28.56 E-value=2.4e+02 Score=20.68 Aligned_cols=98 Identities=16% Similarity=0.138 Sum_probs=51.7
Q ss_pred EEEEEcCCHHHHHHHHhcCCcccccc---cCCceeeEEEEcCCCCCCccEEEEEEeecCCCceEEEEEEEEeeCCCcEEE
Q 048527 9 AVIEVKASADKVHEVFSCRPHIVTSI---SPQSVQSCELIEGEWGRPGAVICWTFTRYAGNPQIVKELIEVVDNENYITI 85 (183)
Q Consensus 9 ~ev~i~apadkvW~~~~d~~~~lpk~---~P~~v~s~e~~eGd~g~~GsvR~~t~~~~~g~~~~~kErl~~iD~~~~~~~ 85 (183)
.+..+++||+.+|+.+.+.. +..+ -...+..-+| +| .--.=++. .+ ..++=+|+++ ..++.|.
T Consensus 3 I~~~l~v~a~~ff~~l~~s~--~~DI~~~tgk~~~~~~L-~G------~~Y~K~~~--~~--~~~~v~It~~-~~~~~Y~ 68 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLIDSL--LYDIKQATGKKLPVKQL-KG------FSYQKKFK--NK--REAKVKITEY-EPNKRYA 68 (120)
T ss_pred EEEEecCCHHHHHHHHHHHH--HHHHHHHcCCCCChhhc-CC------cEEEEEcC--CC--CEEEEEEEEE-cCCCEEE
Confidence 56679999999999987531 2111 1111111111 22 11111222 22 1444456665 4556666
Q ss_pred EEEEecccceeeeEEEEEEEEEEeeeCCCCceEEEEEEEEEec
Q 048527 86 FKLIEGNVLEMLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERK 128 (183)
Q Consensus 86 Y~iieG~~l~~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~ 128 (183)
+++.- +...+..+-++.|. + +|.|.|+.+=+++..
T Consensus 69 ~~~~s------~~~~~~i~Y~i~~~-~-~~~~~v~y~E~~~~~ 103 (120)
T PF11687_consen 69 ATFSS------SRGTFTISYEIEPL-D-DGSIEVTYEEEYESK 103 (120)
T ss_pred EEEEe------cCCCEEEEEEEEEC-C-CCcEEEEEEEEEccC
Confidence 66543 23356667777786 3 555888777666654
No 74
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....
Probab=27.86 E-value=1.7e+02 Score=19.53 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=13.7
Q ss_pred EEEEEEEeeCC---CcEEEEEEEecc
Q 048527 70 VKELIEVVDNE---NYITIFKLIEGN 92 (183)
Q Consensus 70 ~kErl~~iD~~---~~~~~Y~iieG~ 92 (183)
.--++.+.|.+ +..+.|++++|+
T Consensus 14 ~v~~v~a~D~D~~~n~~i~y~i~~~~ 39 (93)
T PF00028_consen 14 VVGQVTATDPDSGPNSQITYSILGGN 39 (93)
T ss_dssp EEEEEEEEESSTSTTSSEEEEEEETT
T ss_pred EEEEEEEEeCCCCCCceEEEEEecCc
Confidence 33445555554 666777777666
No 75
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=24.60 E-value=3.8e+02 Score=21.67 Aligned_cols=123 Identities=7% Similarity=-0.051 Sum_probs=66.8
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCcccccccCCceeeEEEEcC-CCCCCccEEEEEEeecCCC----ceE--EEEEEEEee
Q 048527 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEG-EWGRPGAVICWTFTRYAGN----PQI--VKELIEVVD 78 (183)
Q Consensus 6 ~v~~ev~i~apadkvW~~~~d~~~~lpk~~P~~v~s~e~~eG-d~g~~GsvR~~t~~~~~g~----~~~--~kErl~~iD 78 (183)
-...+..++++++++|+.+.+- ....+|-+ .+..++++|- |... .|-+.......+. ... ++.+ ..++
T Consensus 47 l~k~egvi~~~~e~v~~~l~~~-e~r~~Wd~-~~~~~~iie~Id~~T--~I~~~~~~~~~~~~vspRDfV~vr~~-~r~~ 121 (204)
T cd08904 47 LYRVEGIIPESPAKLIQFMYQP-EHRIKWDK-SLQVYKMLQRIDSDT--FICHTITQSFAMGSISPRDFVDLVHI-KRYE 121 (204)
T ss_pred EEEEEEEecCCHHHHHHHHhcc-chhhhhcc-cccceeeEEEeCCCc--EEEEEecccccCCcccCceEEEEEEE-EEeC
Confidence 3567889999999999999874 44579998 5777777764 2111 1222122201111 111 2221 1234
Q ss_pred CCCcEEEEEEEecccce-----eeeEEEEEEEEEEeeeCCCCceEEEEEEEEEecCCCCCC
Q 048527 79 NENYITIFKLIEGNVLE-----MLYKSFYSVAKVTQKDDHEGGSLVRFTYKYERKNENVPD 134 (183)
Q Consensus 79 ~~~~~~~Y~iieG~~l~-----~~~~sy~~ti~v~p~~~~~~gs~v~Wt~~ye~~~~~~p~ 134 (183)
.....+.+.-++-+-.+ ..-..+.+-+-+.|.+++.++|.++|-+..+++|. .|.
T Consensus 122 ~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~-lP~ 181 (204)
T cd08904 122 GNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGN-LSR 181 (204)
T ss_pred CCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCC-CCH
Confidence 44444445545544332 11223334555667522124799999999998864 443
No 76
>PF07474 G2F: G2F domain; InterPro: IPR006605 Basement membranes are sheet-like extracellular matrices found at the basal surfaces of epithelia and condensed mesenchyma. By preventing cell mixing and providing a cell-adhesive substrate, they play crucial roles in tissue development and function. Basement menbranes are composed of an evolutionarily ancient set of large glycoproteins, which includes members of the laminin family, collagen IV, perlecan and nidogen/entactin. Nidogen/entactin is an important basement membrane component, which promotes cell attachment, neutrophil chemotaxis, trophoblast outgrowth, and angiogenesis. It consists of three globular regions, G1-G3. G1 and G2 are connected by a thread-like structure, whereas that between G2 and G3 is rod-like [, ]. The nidogen G2 region binds to collagen IV and perlecan. The nidogen G2 structure is composed of two domains, an N-terminal EGF-like domain and a much larger beta-barrel domain of ~230 residues. The nidogen G2 beta-barrel consists of an 11-stranded beta-barrel of complex topology, the interior of which is traversed by the hydrophobic, predominantly alpha helical segment connecting strands C and D. The N-terminal half of the barrel comprises two beta-meanders (strands A-C and D-F) linked by the buried alpha-helical segment. The polypeptide chain then crosses the bottom of the barrel and forms a five-stranded Greek key motif in the C- terminal half of the domain. Helix alpha3 caps the top of the barrel and forms the interface to the EGF-like domain. The nidogen G2 beta-barrel domain has unexpected structural similarity to green fluorescent protein, suggesting that they derive from a common ancestor. A large surface patch on the barrel surface is strikingly conserved in all metazoan nidogens. Site-directed mutagenesis demonstrates that the conserved residues in the conserved patch are involved in the binding of perlecan, and possibly also of collagen IV [].; PDB: 1GL4_A 1H4U_A.
Probab=22.73 E-value=1.8e+02 Score=23.65 Aligned_cols=49 Identities=12% Similarity=0.203 Sum_probs=29.7
Q ss_pred EEEEeecCCCceEEEEEEEEeeCCCcEEEEEEEecccce------eeeEEEEEEEEE
Q 048527 57 CWTFTRYAGNPQIVKELIEVVDNENYITIFKLIEGNVLE------MLYKSFYSVAKV 107 (183)
Q Consensus 57 ~~t~~~~~g~~~~~kErl~~iD~~~~~~~Y~iieG~~l~------~~~~sy~~ti~v 107 (183)
.++|. .| ..-.|+++...+|..+...--..++|.+.. +.+..|.=...-
T Consensus 93 ~v~F~-tG-e~l~itq~~~GlD~~~~L~~d~~i~G~vP~i~~~a~v~i~dy~E~Y~~ 147 (192)
T PF07474_consen 93 EVEFA-TG-ERLTITQTARGLDSDGYLLLDTVISGQVPQIPAGADVHIQDYTEEYVQ 147 (192)
T ss_dssp EEEES-SS---EEEEEEEEEE-TTS-EEEEEEEEEEE----TT-EEE---EEEEEEE
T ss_pred EEEEe-CC-CEEEEEEEecccCCCCcEEEEEEEeccCCCCCCCCeEEeCChhheeEE
Confidence 45576 44 557899999999999998888899998731 344455444443
No 77
>PF08473 VGCC_alpha2: Neuronal voltage-dependent calcium channel alpha 2acd; InterPro: IPR013680 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. This eukaryotic domain has been found in the neuronal voltage-dependent calcium channel (VGCC) alpha 2a, 2c, and 2d subunits. It is also found in other calcium channel alpha-2/delta subunits to the N terminus of a Cache domain (IPR004010 from INTERPRO).
Probab=21.78 E-value=1.9e+02 Score=20.85 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=14.9
Q ss_pred eeCCCcEEEEEEEeccc
Q 048527 77 VDNENYITIFKLIEGNV 93 (183)
Q Consensus 77 iD~~~~~~~Y~iieG~~ 93 (183)
||..+|+|+|.-++|..
T Consensus 39 Id~~~RtYtw~PI~gT~ 55 (94)
T PF08473_consen 39 IDEVNRTYTWTPINGTD 55 (94)
T ss_pred eeeeceeEEEeccCCCc
Confidence 68999999999998863
No 78
>TIGR03505 FimV_core FimV N-terminal domain. This region is found at, or about 200 amino acids from, the N-terminus of FimV from Pseudomonas aeruginosa, TspA of Neisseria meningitidis, and related proteins. Disruption of FimV blocks twitching motility from type IV pili; Semmler, et al. suggest a role for this family in peptidoglycan layer remodelling required by type IV fimbrial systems. Most but not all members of this protein family have a C-terminal region recognized by TIGR03504. In between is a highly variable, often repeat-filled region rich in the negatively charged amino acids Asp and Glu.
Probab=21.69 E-value=62 Score=22.09 Aligned_cols=21 Identities=10% Similarity=0.086 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhhCccccccc
Q 048527 144 INIVKNIDAYLIQHEEARADD 164 (183)
Q Consensus 144 ~~~~k~ie~yLl~~~~~~a~~ 164 (183)
....+.+.+...+||+++.++
T Consensus 16 ~s~~q~m~ai~~aNp~AF~~~ 36 (74)
T TIGR03505 16 VSLYQMMLALYRANPDAFIGG 36 (74)
T ss_pred CCHHHHHHHHHHHCHHhHhcC
Confidence 356677888899999999988
No 79
>COG4933 Uncharacterized conserved protein [Function unknown]
Probab=21.01 E-value=1.3e+02 Score=22.84 Aligned_cols=28 Identities=11% Similarity=0.088 Sum_probs=24.8
Q ss_pred CCcceEEEEEEEEcCCHHHHHHHHhcCC
Q 048527 1 MSLAGELEAVIEVKASADKVHEVFSCRP 28 (183)
Q Consensus 1 m~~~~~v~~ev~i~apadkvW~~~~d~~ 28 (183)
|++.|.++.+....+++...|...+...
T Consensus 43 ~aVvGef~~e~V~~~~~~siw~~~~~~~ 70 (124)
T COG4933 43 KAVVGEFTAERVEQVAIESIWRKAGKSG 70 (124)
T ss_pred hheEEEEEeeeEEEcchHHHHHHhcccc
Confidence 6789999999999999999999987543
Done!