BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048530
         (280 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3AIU|A Chain A, Crystal Structure Of Beta-Glucosidase In Rye
 pdb|3AIV|A Chain A, Crystal Structure Of Beta-Glucosidase In Rye Complexed
           With An Aglycone Dimboa
 pdb|3AIW|A Chain A, Crystal Structure Of Beta-Glucosidase In Rye Complexed
           With 2-Deoxy-2- Fluoroglucoside And Dinitrophenol
          Length = 564

 Score = 30.0 bits (66), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 23/42 (54%)

Query: 100 SFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVPYVGLTGY 141
           S+++++    GKP     D Y N IN LI   +VPYV +  +
Sbjct: 150 SWSRILPNGTGKPNQKGIDYYNNLINSLIRHGIVPYVTIWHW 191


>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
           Beta-Galactosidase
 pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
           Reesei With Galactose
 pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
           Reesei With Iptg
 pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
           Reesei With Petg
          Length = 1003

 Score = 28.9 bits (63), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 10/123 (8%)

Query: 140 GYVGANPK--LQGAVSKR---LVAGLLGVESGQDAVIRALLYEKANEKVYPYGIPVAVFT 194
           GY+ A P+   QG  S     ++  LL  ESG   V+R   Y   +   Y   +P +   
Sbjct: 374 GYITATPENATQGVYSDSQNIVITPLLAKESGDFFVVRHANYSSTDTASYTVKLPTSAGD 433

Query: 195 NKISQLRNTLGHAGIKDEGLVVPKALGAEGKIRGNVLAGDENSVAYDRTPEEILRIVYGS 254
             I QL  +L   G   +  V    +G     +  +L        ++   E+ + ++YG 
Sbjct: 434 LTIPQLGGSLTLTGRDSKIHVTDYPVG-----KFTLLYSTAEIFTWNEFAEKTVLVLYGG 488

Query: 255 GDE 257
             E
Sbjct: 489 AQE 491


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.141    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,463,133
Number of Sequences: 62578
Number of extensions: 425543
Number of successful extensions: 876
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 874
Number of HSP's gapped (non-prelim): 6
length of query: 280
length of database: 14,973,337
effective HSP length: 98
effective length of query: 182
effective length of database: 8,840,693
effective search space: 1609006126
effective search space used: 1609006126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)