Query 048530
Match_columns 280
No_of_seqs 178 out of 342
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 10:20:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048530.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048530hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13668 Ferritin_2: Ferritin- 100.0 8.9E-34 1.9E-38 234.8 12.9 134 10-177 1-137 (137)
2 cd01045 Ferritin_like_AB Uncha 98.5 1.1E-06 2.5E-11 70.2 10.0 134 13-174 1-138 (139)
3 cd00657 Ferritin_like Ferritin 98.4 5.7E-06 1.2E-10 63.1 12.1 129 13-175 1-130 (130)
4 PF02915 Rubrerythrin: Rubrery 97.8 0.00014 3.1E-09 58.1 8.2 127 13-174 1-136 (137)
5 cd01048 Ferritin_like_AB2 Unch 97.6 0.00066 1.4E-08 57.0 10.1 124 12-168 2-128 (135)
6 COG1633 Uncharacterized conser 96.9 0.019 4E-07 50.8 12.4 144 9-178 23-169 (176)
7 cd07908 Mn_catalase_like Manga 96.8 0.019 4E-07 48.5 10.7 105 61-175 46-154 (154)
8 PRK12775 putative trifunctiona 96.6 0.028 6E-07 61.4 13.1 142 8-181 858-1001(1006)
9 PRK13456 DNA protection protei 96.4 0.022 4.7E-07 51.1 8.9 141 12-180 22-167 (186)
10 cd01044 Ferritin_CCC1_N Ferrit 96.0 0.17 3.7E-06 41.4 12.0 121 14-176 2-124 (125)
11 cd01052 DPSL DPS-like protein, 95.1 0.72 1.6E-05 38.0 12.5 138 12-175 8-148 (148)
12 cd00907 Bacterioferritin Bacte 95.0 0.84 1.8E-05 37.8 12.8 130 12-178 7-140 (153)
13 PF13668 Ferritin_2: Ferritin- 94.5 0.14 3E-06 42.2 6.8 55 10-87 82-136 (137)
14 cd07908 Mn_catalase_like Manga 93.9 0.2 4.4E-06 42.2 6.8 55 9-86 100-154 (154)
15 cd01045 Ferritin_like_AB Uncha 93.6 0.27 5.8E-06 39.0 6.5 55 8-85 84-138 (139)
16 cd01051 Mn_catalase Manganese 93.5 0.93 2E-05 39.2 10.2 98 61-177 52-154 (156)
17 PRK10635 bacterioferritin; Pro 90.0 9.4 0.0002 33.1 12.5 126 12-179 8-142 (158)
18 PF02915 Rubrerythrin: Rubrery 89.1 0.95 2.1E-05 35.9 5.3 52 11-85 85-136 (137)
19 TIGR02284 conserved hypothetic 88.7 13 0.00027 31.4 12.1 135 12-174 2-138 (139)
20 cd01041 Rubrerythrin Rubreryth 88.6 9.7 0.00021 31.3 11.2 126 11-177 2-132 (134)
21 cd00657 Ferritin_like Ferritin 88.2 2.6 5.7E-05 31.5 7.0 56 8-86 75-130 (130)
22 PRK12775 putative trifunctiona 80.6 4.4 9.5E-05 44.7 7.0 56 9-87 940-996 (1006)
23 PF09968 DUF2202: Uncharacteri 80.2 41 0.00089 29.7 11.7 149 12-197 2-159 (162)
24 cd01041 Rubrerythrin Rubreryth 79.2 4.8 0.0001 33.2 5.3 58 10-87 73-131 (134)
25 cd01046 Rubrerythrin_like rubr 78.4 36 0.00077 27.9 11.3 115 13-177 4-121 (123)
26 TIGR00754 bfr bacterioferritin 74.3 52 0.0011 27.7 12.7 130 12-178 8-141 (157)
27 PF14530 DUF4439: Domain of un 74.2 13 0.00028 31.5 6.7 98 58-176 21-124 (131)
28 cd01042 DMQH Demethoxyubiquino 73.2 12 0.00025 33.0 6.4 105 61-173 28-136 (165)
29 cd01055 Nonheme_Ferritin nonhe 71.6 57 0.0012 27.0 12.5 129 12-176 5-137 (156)
30 COG2406 Protein distantly rela 71.2 20 0.00043 31.6 7.2 106 63-180 50-164 (172)
31 PF03232 COQ7: Ubiquinone bios 67.9 11 0.00025 33.2 5.2 33 61-93 31-64 (172)
32 cd01048 Ferritin_like_AB2 Unch 67.6 20 0.00044 29.9 6.4 55 7-84 79-133 (135)
33 PF11272 DUF3072: Protein of u 66.8 15 0.00033 27.2 4.8 39 165-205 18-56 (57)
34 PF00210 Ferritin: Ferritin-li 63.3 72 0.0016 25.1 10.3 132 12-177 1-138 (142)
35 PRK10635 bacterioferritin; Pro 61.7 21 0.00045 30.9 5.6 58 10-87 82-139 (158)
36 PF09537 DUF2383: Domain of un 58.6 43 0.00093 26.4 6.5 104 12-144 3-108 (111)
37 COG1633 Uncharacterized conser 57.5 37 0.0008 30.0 6.5 56 9-87 112-167 (176)
38 cd00907 Bacterioferritin Bacte 56.7 35 0.00075 28.1 5.9 58 10-87 81-138 (153)
39 cd01046 Rubrerythrin_like rubr 56.3 28 0.00061 28.5 5.2 59 9-87 62-120 (123)
40 PRK13654 magnesium-protoporphy 54.5 18 0.00038 35.6 4.2 55 124-178 85-141 (355)
41 cd01047 ACSF Aerobic Cyclase S 53.0 18 0.0004 35.1 4.0 55 124-178 65-121 (323)
42 cd01055 Nonheme_Ferritin nonhe 50.3 41 0.0009 27.9 5.5 58 10-87 80-137 (156)
43 PF00210 Ferritin: Ferritin-li 48.5 53 0.0012 25.8 5.6 58 10-87 80-137 (142)
44 TIGR02029 AcsF magnesium-proto 47.0 25 0.00055 34.3 4.0 55 124-178 75-131 (337)
45 PF04305 DUF455: Protein of un 46.9 34 0.00074 32.1 4.8 57 61-118 180-237 (253)
46 cd01051 Mn_catalase Manganese 46.8 72 0.0016 27.5 6.5 55 10-87 99-153 (156)
47 CHL00185 ycf59 magnesium-proto 46.7 26 0.00056 34.4 4.0 55 124-178 81-137 (351)
48 PLN02508 magnesium-protoporphy 44.9 25 0.00054 34.6 3.6 54 124-177 81-136 (357)
49 COG2941 CAT5 Ubiquinone biosyn 40.3 51 0.0011 30.1 4.6 33 61-93 69-102 (204)
50 PF11220 DUF3015: Protein of u 39.2 66 0.0014 27.9 5.0 64 130-199 68-131 (144)
51 PF12902 Ferritin-like: Ferrit 38.4 1.2E+02 0.0026 27.9 6.9 61 15-95 1-62 (227)
52 PF03232 COQ7: Ubiquinone bios 36.4 78 0.0017 28.0 5.2 50 130-179 10-60 (172)
53 cd01044 Ferritin_CCC1_N Ferrit 35.8 63 0.0014 26.2 4.2 55 127-181 3-57 (125)
54 PF11583 AurF: P-aminobenzoate 34.7 48 0.0011 30.8 3.8 111 60-180 110-229 (304)
55 COG2193 Bfr Bacterioferritin ( 34.6 69 0.0015 28.2 4.4 59 9-87 81-139 (157)
56 PF13628 DUF4142: Domain of un 31.1 3E+02 0.0064 22.5 8.2 106 61-173 30-138 (139)
57 PF05974 DUF892: Domain of unk 31.1 82 0.0018 27.0 4.4 113 61-176 33-151 (159)
58 PRK13456 DNA protection protei 29.6 1.8E+02 0.0038 26.4 6.3 56 12-88 109-164 (186)
59 PF01786 AOX: Alternative oxid 29.3 89 0.0019 28.6 4.5 56 21-81 139-201 (207)
60 cd07910 MiaE MiaE tRNA-modifyi 29.2 4.3E+02 0.0093 23.8 11.7 110 62-179 48-159 (180)
61 TIGR00754 bfr bacterioferritin 27.7 86 0.0019 26.3 3.9 58 10-87 82-139 (157)
62 PF11553 DUF3231: Protein of u 27.0 3.9E+02 0.0084 22.6 8.7 86 61-163 45-136 (166)
63 COG1867 TRM1 N2,N2-dimethylgua 26.8 43 0.00093 33.4 2.1 63 116-179 126-195 (380)
64 cd01052 DPSL DPS-like protein, 25.5 2.7E+02 0.0059 22.5 6.5 57 9-86 92-148 (148)
65 PF03405 FA_desaturase_2: Fatt 22.6 3.4E+02 0.0073 26.7 7.3 99 61-186 183-284 (330)
66 PF05067 Mn_catalase: Manganes 21.5 1.1E+02 0.0023 29.5 3.6 118 64-181 55-197 (283)
67 COG3546 Mn-containing catalase 20.1 7.9E+02 0.017 23.7 10.0 115 62-181 52-192 (277)
No 1
>PF13668 Ferritin_2: Ferritin-like domain
Probab=100.00 E-value=8.9e-34 Score=234.85 Aligned_cols=134 Identities=39% Similarity=0.678 Sum_probs=125.4
Q ss_pred CchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhh-c-
Q 048530 10 SDVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTV-K- 87 (280)
Q Consensus 10 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aL-g- 87 (280)
+|++||||||+|||||.+||.+++.|.+.++ . +..+++.+++++++|+.||..|+++|+++| |
T Consensus 1 ~D~~iL~~Al~lE~l~~~fY~~~~~~~~~~~-~--------------~~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~g~ 65 (137)
T PF13668_consen 1 GDLDILNFALNLEYLEADFYQQAAEGFTLQD-N--------------KAALDPEVRDLFQEIADQEQGHVDFLQAALEGG 65 (137)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCChhh-h--------------hccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6999999999999999999999998887764 2 356789999999999999999999999999 6
Q ss_pred -CCCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccccCCChhHHHHHHHHHHhhhh
Q 048530 88 -GFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVPYVGLTGYVGANPKLQGAVSKRLVAGLLGVESG 166 (280)
Q Consensus 88 -av~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~VEA~ 166 (280)
++++|.||+ +||||+|+.+||..|+.||++|+++|+|++++++|+++++++++|++||++
T Consensus 66 ~~~~~~~~~~-------------------~~~~~~~~~~~L~~A~~~E~~~~~~Y~g~~~~~~~~~~~~~~~~i~~~Ea~ 126 (137)
T PF13668_consen 66 RPVPPPAYDF-------------------PFDPFTDDASFLRLAYTLEDVGVSAYKGAAPQIEDPELKALAASIAGVEAR 126 (137)
T ss_pred CCCCCCcccc-------------------ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 778888887 489999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh
Q 048530 167 QDAVIRALLYE 177 (280)
Q Consensus 167 Haa~IR~lL~~ 177 (280)
|++|||++|+|
T Consensus 127 H~~~ir~ll~~ 137 (137)
T PF13668_consen 127 HAAWIRNLLGQ 137 (137)
T ss_pred HHHHHHHHhcC
Confidence 99999999985
No 2
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=98.50 E-value=1.1e-06 Score=70.22 Aligned_cols=134 Identities=17% Similarity=0.214 Sum_probs=103.2
Q ss_pred hhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhcCC---
Q 048530 13 DLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVKGF--- 89 (280)
Q Consensus 13 diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLgav--- 89 (280)
+|||.|+.+|.....||...+... -++.++.++++++.+|..|...|...+...
T Consensus 1 ~~l~~a~~~E~~~~~~Y~~~a~~~-----------------------~~~~~~~~~~~la~eE~~H~~~l~~~~~~~~~~ 57 (139)
T cd01045 1 EILALAIKMEEEAAEFYLELAEKA-----------------------KDPELKKLFEELAEEEKEHAERLEELYEKLFGE 57 (139)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHC-----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 689999999999999999986321 145799999999999999999999998732
Q ss_pred CCccccCCcchHHHHHHHhcCCCCC-CCCCCCCChHHHHHHHhhccchhHHhhccccccCCChhHHHHHHHHHHhhhhhH
Q 048530 90 PRPLLDLSAGSFAKVIDKAFGKPLN-PPFDPYANSINYLIASYLVPYVGLTGYVGANPKLQGAVSKRLVAGLLGVESGQD 168 (280)
Q Consensus 90 ~~P~id~s~~~F~~~~~~A~g~~l~-p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~VEA~Ha 168 (280)
+-|..... .+... ..+.... ..+.+-.+...-|..+.-+|..++.-|.-.+..+.++..+.+...|...|.+|.
T Consensus 58 ~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~~~~~~d~~~~~~~~~l~~~E~~H~ 132 (139)
T cd01045 58 ELPELEPE--DYKEE---VEEEPEFKKALESLMDPLEALRLAIEIEKDAIEFYEELAEKAEDPEVKKLFEELAEEERGHL 132 (139)
T ss_pred cCCcccHH--HHHHH---HhhhhhHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 44544332 12111 0010000 012234677889999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 048530 169 AVIRAL 174 (280)
Q Consensus 169 a~IR~l 174 (280)
..+|.+
T Consensus 133 ~~l~~~ 138 (139)
T cd01045 133 RLLEEL 138 (139)
T ss_pred HHHHHh
Confidence 999975
No 3
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=98.44 E-value=5.7e-06 Score=63.13 Aligned_cols=129 Identities=22% Similarity=0.189 Sum_probs=99.9
Q ss_pred hhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhcC-CCC
Q 048530 13 DLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVKG-FPR 91 (280)
Q Consensus 13 diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLga-v~~ 91 (280)
.+||-++..|+....+|...... +. ++.++.++.+++.+|..|...|.+.+.. ...
T Consensus 1 ~~L~~~~~~E~~a~~~y~~~~~~----------------------~~-~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~ 57 (130)
T cd00657 1 RLLNDALAGEYAAIIAYGQLAAR----------------------AP-DPDLKDELLEIADEERRHADALAERLRELGGT 57 (130)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH----------------------cC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 36899999999999999998631 11 5889999999999999999999998761 122
Q ss_pred ccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccccCCChhHHHHHHHHHHhhhhhHHHH
Q 048530 92 PLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVPYVGLTGYVGANPKLQGAVSKRLVAGLLGVESGQDAVI 171 (280)
Q Consensus 92 P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~VEA~Haa~I 171 (280)
|..... .+. ... ++..+..+....|..+...|..++..|......+.+++.+.....|...|.+|...+
T Consensus 58 ~~~~~~--~~~----~~~-----~~~~~~~~~~~~l~~~~~~E~~~~~~y~~~~~~~~d~~~~~~~~~~~~~E~~H~~~~ 126 (130)
T cd00657 58 PPLPPA--HLL----AAY-----ALPKTSDDPAEALRAALEVEARAIAAYRELIEQADDPELRRLLERILADEQRHAAWF 126 (130)
T ss_pred CCCCHH--HHH----Hhc-----ccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 222211 100 011 122334677788999999999999999999998899999999999999999999998
Q ss_pred HHHH
Q 048530 172 RALL 175 (280)
Q Consensus 172 R~lL 175 (280)
+.++
T Consensus 127 ~~~~ 130 (130)
T cd00657 127 RKLL 130 (130)
T ss_pred HhhC
Confidence 8653
No 4
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=97.76 E-value=0.00014 Score=58.12 Aligned_cols=127 Identities=18% Similarity=0.184 Sum_probs=98.1
Q ss_pred hhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCC-
Q 048530 13 DLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVK-GFP- 90 (280)
Q Consensus 13 diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-av~- 90 (280)
++|+.|+..|.-...||...+... +..+ |.++.++.+++.+|..|.++|.+.+. -.+
T Consensus 1 e~L~~A~~~E~~~~~~Y~~~a~~~-------------------~~~~--p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~ 59 (137)
T PF02915_consen 1 EILEMAIKMELEAAKFYRELAEKA-------------------KDEG--PELKELFRRLAEEEQEHAKFLEKLLRKLGPG 59 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------------------HHTT--HHHHHHHHHHHHHHHHHHHHHHHHHCHCSTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh-------------------hhcc--cHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 689999999999999999986211 1111 78999999999999999999999988 222
Q ss_pred -CccccCCcchHHHHHHHhcCCCCCCCCCC------CCChHHHHHHHhhccchhHHhhccccccCCChhHHHHHHHHHHh
Q 048530 91 -RPLLDLSAGSFAKVIDKAFGKPLNPPFDP------YANSINYLIASYLVPYVGLTGYVGANPKLQGAVSKRLVAGLLGV 163 (280)
Q Consensus 91 -~P~id~s~~~F~~~~~~A~g~~l~p~FdP------y~n~~~FL~~A~~~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~V 163 (280)
.|.+--. ...+.+.+ -.+....+-.+...|.-++.-|.-.+..+.++..++..-.|...
T Consensus 60 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~a~~~~~~~~~~~~~~l~~~ 125 (137)
T PF02915_consen 60 EEPPFLEE--------------KVEYSFFPKLEEETDENLEEALEMAIKEEKDAYEFYAELARKAPDPEIRKLFEELAKE 125 (137)
T ss_dssp HHTHCHCC--------------CCCHCCCCTCCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred cCcchhhh--------------hhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2321100 01111222 12456788888999999999999999999999999999999999
Q ss_pred hhhhHHHHHHH
Q 048530 164 ESGQDAVIRAL 174 (280)
Q Consensus 164 EA~Haa~IR~l 174 (280)
|.+|...++.+
T Consensus 126 E~~H~~~l~~l 136 (137)
T PF02915_consen 126 EKEHEDLLEKL 136 (137)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 5
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=97.60 E-value=0.00066 Score=57.04 Aligned_cols=124 Identities=18% Similarity=0.227 Sum_probs=97.5
Q ss_pred hhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc--CC
Q 048530 12 VDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVK--GF 89 (280)
Q Consensus 12 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg--av 89 (280)
.++|.||+..|++.-+||......+| .+.++..|+..|+.|..+|+..+. .+
T Consensus 2 ~~~L~~Ale~Ek~a~~~Y~~~~~k~~--------------------------~~~~F~~la~~E~~H~~~l~~L~~~~~~ 55 (135)
T cd01048 2 IAALLYALEEEKLARDVYLALYEKFG--------------------------GLRPFSNIAESEQRHMDALKTLLERYGL 55 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc--------------------------CcchHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 57899999999999999999874332 246788899999999999999998 78
Q ss_pred CCccccCCcchHHHHH-HHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccccCCChhHHHHHHHHHHhhhhhH
Q 048530 90 PRPLLDLSAGSFAKVI-DKAFGKPLNPPFDPYANSINYLIASYLVPYVGLTGYVGANPKLQGAVSKRLVAGLLGVESGQD 168 (280)
Q Consensus 90 ~~P~id~s~~~F~~~~-~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~VEA~Ha 168 (280)
+.|..+...+.|...- +... ...-.+...-|-.+..+|...+.=|.-++...+|++++..--.+...|-.|-
T Consensus 56 ~~p~~~~~~~~f~~~~~~~l~-------~~~~~s~~~al~~g~~~E~~~i~~ye~~~~~~~d~d~k~v~~~L~~~e~~H~ 128 (135)
T cd01048 56 PDPVDPFSGGVFTNPQYNQLV-------EQGPKSLQDALEVGVLIEELDIADYDRLLERTQNPDIRDVFENLQAASRNHH 128 (135)
T ss_pred CCCCCccccccccchhHHHHH-------HhccccHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 8887666544443110 0000 0123567788899999999999999999999999999999888888888875
No 6
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.019 Score=50.82 Aligned_cols=144 Identities=16% Similarity=0.107 Sum_probs=103.5
Q ss_pred CCchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-
Q 048530 9 GSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVK- 87 (280)
Q Consensus 9 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg- 87 (280)
.+-.++|++|+..|.=.-.||.+.+.- --++.++.++.+|+.+|..|.+-+++.+.
T Consensus 23 ~~~~e~L~~Ai~~E~eA~~fY~~lae~-----------------------~~~~~~rk~~~~la~eE~~H~~~f~~l~~~ 79 (176)
T COG1633 23 LSIEELLAIAIRGELEAIKFYEELAER-----------------------IEDEEIRKLFEDLADEEMRHLRKFEKLLEK 79 (176)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------cCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356799999999999999999998621 12578999999999999999999999887
Q ss_pred CCCCccccCCcchHHHHHHHhcCCCCCC--CCCCCCChHHHHHHHhhccchhHHhhccccccCCChhHHHHHHHHHHhhh
Q 048530 88 GFPRPLLDLSAGSFAKVIDKAFGKPLNP--PFDPYANSINYLIASYLVPYVGLTGYVGANPKLQGAVSKRLVAGLLGVES 165 (280)
Q Consensus 88 av~~P~id~s~~~F~~~~~~A~g~~l~p--~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~VEA 165 (280)
-.++|.-......+. +........| .++.=.+...=+..|.--|--.+--|...+-.+.|.+.+.+.-.|...|=
T Consensus 80 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~I~~a~~~E~~t~~~Y~~~~~~~~~~~~~~~~~~~a~~E~ 156 (176)
T COG1633 80 LTPKEVSSEEEEGEI---ESEILEYLQPGKEMEKSVSYLEAIEAAMEAEKDTIEFYEELLDELVNEEAKKLFKTIADDEK 156 (176)
T ss_pred hcCCccchhhhhcch---hhhhccccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 344442111110000 0000011111 13333334444555667788999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhh
Q 048530 166 GQDAVIRALLYEK 178 (280)
Q Consensus 166 ~Haa~IR~lL~~~ 178 (280)
+|..+++..+...
T Consensus 157 ~H~~~l~~~~~~~ 169 (176)
T COG1633 157 GHASGLLSLYNRL 169 (176)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877654
No 7
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=96.77 E-value=0.019 Score=48.52 Aligned_cols=105 Identities=16% Similarity=0.147 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHhhc---CCCCccccCCcchHHHHHHHhcCCCCCC-CCCCCCChHHHHHHHhhccch
Q 048530 61 DPFTNDVVLQFAWQEVGHLRAIKKTVK---GFPRPLLDLSAGSFAKVIDKAFGKPLNP-PFDPYANSINYLIASYLVPYV 136 (280)
Q Consensus 61 ~~~v~~~~~eia~~E~~HV~~L~~aLg---av~~P~id~s~~~F~~~~~~A~g~~l~p-~FdPy~n~~~FL~~A~~~E~V 136 (280)
++.+++++.+++.+|..|...|...++ +.|...-. ....| ....+ .+.+-.+....|-.+..+|.-
T Consensus 46 ~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~-~~~~~---------~~~~~~~~~~~~~~~~~L~~~~~~E~~ 115 (154)
T cd07908 46 YPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSS-SSDKF---------TYWTGKYVNYGESIKEMLKLDIASEKA 115 (154)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhh-ccccC---------CcCCccccCCccCHHHHHHHHHHHHHH
Confidence 588999999999999999999998866 33321111 00011 00111 112224667799999999999
Q ss_pred hHHhhccccccCCChhHHHHHHHHHHhhhhhHHHHHHHH
Q 048530 137 GLTGYVGANPKLQGAVSKRLVAGLLGVESGQDAVIRALL 175 (280)
Q Consensus 137 GvtAY~Gaap~l~~~~~l~aAa~Il~VEA~Haa~IR~lL 175 (280)
++.-|..++..+.|++.+...-.|+.-|-.|..++..+|
T Consensus 116 ai~~Y~~~~~~~~d~~~r~ll~~I~~eE~~H~~~L~~~l 154 (154)
T cd07908 116 AIAKYKRQAETIKDPYIRALLNRIILDEKLHIKILEELL 154 (154)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999987764
No 8
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.60 E-value=0.028 Score=61.37 Aligned_cols=142 Identities=12% Similarity=0.126 Sum_probs=109.4
Q ss_pred CCCchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 048530 8 PGSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVK 87 (280)
Q Consensus 8 ~~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 87 (280)
..++.|||.+|+.+|==--+||...+. ++ -++.+++++.++|..|..|.+.|++.+.
T Consensus 858 ~~~~~eil~~Ai~mE~~g~~FY~~~A~----------------------~a-~~~~~K~lF~~LA~eE~~H~~~l~~~~~ 914 (1006)
T PRK12775 858 DAAALEAIRTAFEIELGGMAFYARAAK----------------------ET-SDPVLKELFLKFAGMEQEHMATLARRYH 914 (1006)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH----------------------Hc-CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356789999999999999999999863 12 2689999999999999999999988876
Q ss_pred -CCCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccccCCChh-HHHHHHHHHHhhh
Q 048530 88 -GFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVPYVGLTGYVGANPKLQGAV-SKRLVAGLLGVES 165 (280)
Q Consensus 88 -av~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~l~~~~-~l~aAa~Il~VEA 165 (280)
..+.+.-++. .+. ...-..+ +++..++.+.|-.|.-+|.=.+.=|..++-...+++ .+++.--|..-|-
T Consensus 915 ~~~~~~~~~~~--~~~----~~~~~~~---~~~~~~~~~al~lAm~~Ekdai~fY~~la~~~~d~e~~k~l~~~LA~EEk 985 (1006)
T PRK12775 915 AAAPSPTEGFK--IER----AAIMAGV---KGRPDDPGNLFRIAIEFERRAVKFFKERVAETPDGSVERQLYKELAAEER 985 (1006)
T ss_pred hccCCcccccc--cch----hhhhhhh---ccccCCHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH
Confidence 3333221221 010 0000011 122356788999999999999999999999999986 6899999999999
Q ss_pred hhHHHHHHHHHhhhhc
Q 048530 166 GQDAVIRALLYEKANE 181 (280)
Q Consensus 166 ~Haa~IR~lL~~~~~~ 181 (280)
.|-..+..++.+..+-
T Consensus 986 ~Hl~~L~~~~d~~~~~ 1001 (1006)
T PRK12775 986 EHVALLTTEFERWKQG 1001 (1006)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999998887654
No 9
>PRK13456 DNA protection protein DPS; Provisional
Probab=96.39 E-value=0.022 Score=51.09 Aligned_cols=141 Identities=14% Similarity=0.094 Sum_probs=99.6
Q ss_pred hhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHh---hcC
Q 048530 12 VDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKT---VKG 88 (280)
Q Consensus 12 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~a---Lga 88 (280)
+++||=||.-||+-.=.|..... ...|+ ..+.+...+++-+.+|..|-..|-.- ||+
T Consensus 22 i~lLn~AlA~E~~a~~~Y~~~a~-----------~~~G~---------~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG 81 (186)
T PRK13456 22 VELLVKNAAAEFTTYYYYTILRA-----------HLIGL---------EGEGLKEIAEDARLEDRNHFEALVPRIYELGG 81 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHhCc---------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 67899999999998888877642 11111 24778899999999999999999865 444
Q ss_pred CCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccccCC--ChhHHHHHHHHHHhhhh
Q 048530 89 FPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVPYVGLTGYVGANPKLQ--GAVSKRLVAGLLGVESG 166 (280)
Q Consensus 89 v~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~l~--~~~~l~aAa~Il~VEA~ 166 (280)
.| ..|. ..|-.+... ++ +.+|=| -+|...+|...-.=|-..+..|.=....+. |+.....+-.||+.|-.
T Consensus 82 ~P--~~~p--~~~~~ls~~--~~-~~~p~d-~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~~kDp~T~~l~~~IL~dE~e 153 (186)
T PRK13456 82 KL--PRDI--REFHDISAC--PD-AYLPEN-PTDPKEILKVLLEAERCAIRTYTEICDMTAGKDPRTYDLALAILQEEIE 153 (186)
T ss_pred CC--CCCh--HHHhhhhcC--cc-ccCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 43 2221 223222111 11 011222 246778899888889999999997776664 56678999999999999
Q ss_pred hHHHHHHHHHhhhh
Q 048530 167 QDAVIRALLYEKAN 180 (280)
Q Consensus 167 Haa~IR~lL~~~~~ 180 (280)
|..++..+|..++.
T Consensus 154 H~~dl~~lL~~~~~ 167 (186)
T PRK13456 154 HEAWFSELLGGGPS 167 (186)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999997543
No 10
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=96.05 E-value=0.17 Score=41.44 Aligned_cols=121 Identities=21% Similarity=0.163 Sum_probs=83.8
Q ss_pred hhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc--CCCC
Q 048530 14 LLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVK--GFPR 91 (280)
Q Consensus 14 iLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg--av~~ 91 (280)
.+|=.+.-|.-...||...+.- --++.++.++.++|.+|..|..++++.++ +.+.
T Consensus 2 ~~~~~~~~E~~~~~~Y~~la~~-----------------------~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~ 58 (125)
T cd01044 2 RLRKFQKDEITEAAIYRKLAKR-----------------------EKDPENREILLKLAEDERRHAEFWKKFLGKRGVPP 58 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 4666788999999999998621 12578999999999999999999999988 3332
Q ss_pred ccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccccCCChhHHHHHHHHHHhhhhhHHHH
Q 048530 92 PLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVPYVGLTGYVGANPKLQGAVSKRLVAGLLGVESGQDAVI 171 (280)
Q Consensus 92 P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~VEA~Haa~I 171 (280)
|.-++. ..|-......+ +....+..+.-.|.-++.-|...... +...-.|..-|-.|-..+
T Consensus 59 ~~~~~~-~~~~~~l~~~~------------g~~~~l~~~~~~E~~ai~~Y~~~~~~------~~~~~~Ii~dE~~H~~~L 119 (125)
T cd01044 59 PRPKLK-IFFYKLLARIF------------GPTFVLKLLERGEERAIEKYDRLLEE------RPELKEIIADELEHEEVL 119 (125)
T ss_pred CCccHH-HHHHHHHHHHH------------hHHHHHHHHHHhHHhhHhhHHhhhhh------hHHHHHHHHHHHHHHHHH
Confidence 200111 11222211111 12345555667888889999887655 556678999999999998
Q ss_pred HHHHH
Q 048530 172 RALLY 176 (280)
Q Consensus 172 R~lL~ 176 (280)
+.++.
T Consensus 120 ~~~~~ 124 (125)
T cd01044 120 IALLD 124 (125)
T ss_pred HHhhh
Confidence 87763
No 11
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=95.06 E-value=0.72 Score=38.04 Aligned_cols=138 Identities=14% Similarity=0.099 Sum_probs=95.8
Q ss_pred hhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCC
Q 048530 12 VDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVK-GFP 90 (280)
Q Consensus 12 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-av~ 90 (280)
++.||=+|+.|+.-...|..-..- + .| .++ ..+...+++++.+|..|+..|-.-+- =-.
T Consensus 8 ~~~Ln~~la~e~~~~~~y~~~~~~---------~--~g--------~~f-~~l~~~~~~~~~ee~~Had~laEri~~lGg 67 (148)
T cd01052 8 IELLNKAFADEWLAYYYYTILAKH---------V--KG--------PEG-EGIKEELEEAAEEELNHAELLAERIYELGG 67 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------H--cC--------Cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 467999999999988888775421 0 01 112 46889999999999999999987755 112
Q ss_pred CccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccccC--CChhHHHHHHHHHHhhhhhH
Q 048530 91 RPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVPYVGLTGYVGANPKL--QGAVSKRLVAGLLGVESGQD 168 (280)
Q Consensus 91 ~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~l--~~~~~l~aAa~Il~VEA~Ha 168 (280)
.|..... .|... .+..+..+-.-..+....+-...--|...+..|....... .|.......-.|+.-|-.|.
T Consensus 68 ~p~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~~~~~~~a~~~D~~t~~ll~~~l~de~~h~ 141 (148)
T cd01052 68 TPPRDPK--DWYEI----SGCKCGYLPPDPPDVKGILKVNLKAERCAIKVYKELCDMTHGKDPVTYDLALAILNEEIEHE 141 (148)
T ss_pred CCCCChH--HHHHH----hcccccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 3443321 22211 1111111111234677899999999999999999888765 56667888899999999999
Q ss_pred HHHHHHH
Q 048530 169 AVIRALL 175 (280)
Q Consensus 169 a~IR~lL 175 (280)
.|++++|
T Consensus 142 ~~~~~~~ 148 (148)
T cd01052 142 EDLEELL 148 (148)
T ss_pred HHHHhhC
Confidence 9999875
No 12
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=94.99 E-value=0.84 Score=37.84 Aligned_cols=130 Identities=13% Similarity=0.054 Sum_probs=94.6
Q ss_pred hhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCC
Q 048530 12 VDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVK-GFP 90 (280)
Q Consensus 12 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-av~ 90 (280)
++.||-+|+.||--...|..-..-. + ..++ +.+...+.+++.+|..|...|-.-+. --.
T Consensus 7 ~~~Ln~~l~~E~~a~~~Y~~~a~~~--~-----------------~~~~-~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg 66 (153)
T cd00907 7 IEALNKALTGELTAINQYFLHARML--E-----------------DWGL-EKLAERFRKESIEEMKHADKLIERILFLEG 66 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--H-----------------cCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5789999999999999998554210 0 1112 56789999999999999999987764 112
Q ss_pred CccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccc---cCCChhHHHHHHHHHHhhhhh
Q 048530 91 RPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVPYVGLTGYVGANP---KLQGAVSKRLVAGLLGVESGQ 167 (280)
Q Consensus 91 ~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap---~l~~~~~l~aAa~Il~VEA~H 167 (280)
+|.+... .|+ ....+....|..+.--|.--+..|.-... ...++......-.|+..|-.|
T Consensus 67 ~p~~~~~----------------~~~-~~~~~~~~~l~~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~~~~~~e~~h 129 (153)
T cd00907 67 LPNLQRL----------------GKL-RIGEDVPEMLENDLALEYEAIAALNEAIALCEEVGDYVSRDLLEEILEDEEEH 129 (153)
T ss_pred CCCCCcC----------------CCC-CcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3332110 011 11136677788888888888999998754 357888899999999999999
Q ss_pred HHHHHHHHHhh
Q 048530 168 DAVIRALLYEK 178 (280)
Q Consensus 168 aa~IR~lL~~~ 178 (280)
..+++.++...
T Consensus 130 ~~~l~~~l~~~ 140 (153)
T cd00907 130 IDWLETQLDLI 140 (153)
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 13
>PF13668 Ferritin_2: Ferritin-like domain
Probab=94.51 E-value=0.14 Score=42.20 Aligned_cols=55 Identities=18% Similarity=0.159 Sum_probs=48.3
Q ss_pred CchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 048530 10 SDVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVK 87 (280)
Q Consensus 10 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 87 (280)
+|.++|.+|+.+|..-..+|..++.- --++.++..+..|+..|..|...||..|+
T Consensus 82 ~~~~~L~~A~~~E~~~~~~Y~g~~~~-----------------------~~~~~~~~~~~~i~~~Ea~H~~~ir~ll~ 136 (137)
T PF13668_consen 82 DDASFLRLAYTLEDVGVSAYKGAAPQ-----------------------IEDPELKALAASIAGVEARHAAWIRNLLG 136 (137)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78999999999999999999988621 01678999999999999999999999875
No 14
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=93.93 E-value=0.2 Score=42.18 Aligned_cols=55 Identities=13% Similarity=0.176 Sum_probs=47.0
Q ss_pred CCchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhh
Q 048530 9 GSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTV 86 (280)
Q Consensus 9 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aL 86 (280)
.+..++|.+++.+|.=-.+||...+.- --|+.+++++.+|..+|..|.+.|++.|
T Consensus 100 ~~~~~~L~~~~~~E~~ai~~Y~~~~~~-----------------------~~d~~~r~ll~~I~~eE~~H~~~L~~~l 154 (154)
T cd07908 100 ESIKEMLKLDIASEKAAIAKYKRQAET-----------------------IKDPYIRALLNRIILDEKLHIKILEELL 154 (154)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------cCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 356779999999999999999998631 1368899999999999999999998754
No 15
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=93.57 E-value=0.27 Score=38.96 Aligned_cols=55 Identities=22% Similarity=0.267 Sum_probs=47.0
Q ss_pred CCCchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHh
Q 048530 8 PGSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKT 85 (280)
Q Consensus 8 ~~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~a 85 (280)
..++.++|..|+..|---.+||...+.. ..++.++.++++|..+|..|+..|+..
T Consensus 84 ~~~~~~~l~~a~~~E~~~~~~Y~~~~~~-----------------------~~d~~~~~~~~~l~~~E~~H~~~l~~~ 138 (139)
T cd01045 84 LMDPLEALRLAIEIEKDAIEFYEELAEK-----------------------AEDPEVKKLFEELAEEERGHLRLLEEL 138 (139)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------cCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577889999999999999999998621 125789999999999999999999863
No 16
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=93.52 E-value=0.93 Score=39.23 Aligned_cols=98 Identities=17% Similarity=0.121 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHhhc---C--CCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccc
Q 048530 61 DPFTNDVVLQFAWQEVGHLRAIKKTVK---G--FPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVPY 135 (280)
Q Consensus 61 ~~~v~~~~~eia~~E~~HV~~L~~aLg---a--v~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~ 135 (280)
++.+++.+.+|+.+|..|+..|-..+. + ...|- ++ +..++-.|...-|......|.
T Consensus 52 ~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~~~g~pw---~~----------------~yv~~~~d~~~~L~~ni~aE~ 112 (156)
T cd01051 52 DPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQGVPW---TA----------------AYIQSSGNLVADLRSNIAAES 112 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcC---CC----------------cccCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999988765 1 11221 11 013334566678888888899
Q ss_pred hhHHhhccccccCCChhHHHHHHHHHHhhhhhHHHHHHHHHh
Q 048530 136 VGLTGYVGANPKLQGAVSKRLVAGLLGVESGQDAVIRALLYE 177 (280)
Q Consensus 136 VGvtAY~Gaap~l~~~~~l~aAa~Il~VEA~Haa~IR~lL~~ 177 (280)
-+..-|.=....++|+.++...--|+.-|-.|.-.++.+|.+
T Consensus 113 ~Ai~~Y~~l~~~~~Dp~v~~~l~~I~~rE~~H~~~f~~~l~~ 154 (156)
T cd01051 113 RARLTYERLYEMTDDPGVKDTLSFLLVREIVHQNAFGKALES 154 (156)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999888764
No 17
>PRK10635 bacterioferritin; Provisional
Probab=89.95 E-value=9.4 Score=33.05 Aligned_cols=126 Identities=18% Similarity=0.192 Sum_probs=92.3
Q ss_pred hhhhhhhHhHHHHHHHHHHhhhh---CCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-
Q 048530 12 VDLLEFPLNLEYLEAEFFLFGSL---GYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVK- 87 (280)
Q Consensus 12 ~diLNFALnLEyLEa~FY~~a~~---G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg- 87 (280)
++.||=+|+.|+.-..=|..-+. ++|+. . ....+..-+.+|..|...|-.-+-
T Consensus 8 i~~LN~~L~~El~Ai~QY~~ha~~~~~~G~~----------------------~-la~~~~~ea~eEm~HA~~l~eRIl~ 64 (158)
T PRK10635 8 INYLNKLLGNELVAINQYFLHARMFKNWGLM----------------------R-LNDVEYHESIDEMKHADKYIERILF 64 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH----------------------H-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999998876654331 22222 2 223333348899999998886543
Q ss_pred --CCCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhcccccc---CCChhHHHHHHHHHH
Q 048530 88 --GFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVPYVGLTGYVGANPK---LQGAVSKRLVAGLLG 162 (280)
Q Consensus 88 --av~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~---l~~~~~l~aAa~Il~ 162 (280)
+.| .++- + ++..+-.|....|......|.-.+.-|.=+... ..+...+.....|+.
T Consensus 65 LgG~P--~~~~----------------~-~~~~~g~~v~eml~~dl~~E~~ai~~y~e~i~~a~~~~D~~s~~ll~~iL~ 125 (158)
T PRK10635 65 LEGIP--NLQD----------------L-GKLNIGEDVEEMLRSDLRLELEGAKDLREAIAYADSVHDYVSRDMMIEILA 125 (158)
T ss_pred cCCCC--CCCC----------------C-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 433 2211 1 123334688899999999999999999988886 567888999999999
Q ss_pred hhhhhHHHHHHHHHhhh
Q 048530 163 VESGQDAVIRALLYEKA 179 (280)
Q Consensus 163 VEA~Haa~IR~lL~~~~ 179 (280)
-|-.|.-|+.+.|....
T Consensus 126 dEe~H~~~le~~l~~i~ 142 (158)
T PRK10635 126 DEEGHIDWLETELDLIG 142 (158)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988654
No 18
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=89.11 E-value=0.95 Score=35.87 Aligned_cols=52 Identities=21% Similarity=0.151 Sum_probs=43.9
Q ss_pred chhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHh
Q 048530 11 DVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKT 85 (280)
Q Consensus 11 D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~a 85 (280)
...+|..|+..|---..||...+.. .-++.+++++.+|+.+|..|+..|+..
T Consensus 85 ~~~~l~~a~~~E~~~~~~Y~~~a~~-----------------------~~~~~~~~~~~~l~~~E~~H~~~l~~l 136 (137)
T PF02915_consen 85 LEEALEMAIKEEKDAYEFYAELARK-----------------------APDPEIRKLFEELAKEEKEHEDLLEKL 136 (137)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHH-----------------------TTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------------------CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678888999999999999998631 136889999999999999999999864
No 19
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=88.68 E-value=13 Score=31.44 Aligned_cols=135 Identities=14% Similarity=0.097 Sum_probs=95.7
Q ss_pred hhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCC
Q 048530 12 VDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVK-GFP 90 (280)
Q Consensus 12 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-av~ 90 (280)
++.||=.+...|=--++|..++. + + =++.++.++++++.+...|+.-|+..+. -..
T Consensus 2 i~~Ln~Lie~~~D~~~gY~~aae-----~-----------------v-~~~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg 58 (139)
T TIGR02284 2 IHSLNDLIEISIDGKDGFEESAE-----E-----------------V-KDPELATLFRRIAGEKSAIVSELQQVVASLGG 58 (139)
T ss_pred hHHHHHHHHHcccHHHHHHHHHH-----H-----------------C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46788888888888899999872 2 1 1578999999999999999999999887 122
Q ss_pred CccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccccC-CChhHHHHHHHHHHhhhhhHH
Q 048530 91 RPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVPYVGLTGYVGANPKL-QGAVSKRLVAGLLGVESGQDA 169 (280)
Q Consensus 91 ~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~l-~~~~~l~aAa~Il~VEA~Haa 169 (280)
.|.- + ++|...+..+.- .+...|.+ .++..+|....-=|+..+.+|.-+...- -.++++...-..+.-+-+|-.
T Consensus 59 ~p~~--~-gs~~g~lhr~w~-~lks~~~~-~~d~aiL~~~e~gEd~~~~~y~~aL~~~~l~~~~r~~l~~q~~~i~~~~d 133 (139)
T TIGR02284 59 KPED--H-GSMVGSLHQFWG-KIRATLTP-NDDYVVLEEAERGEDRAKKAYDETLADQDTPAAARDVALRQYPGVRACHD 133 (139)
T ss_pred CCCC--C-CcHHHHHHHHHH-HHHHHHcC-CChHHHHHHHHHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHH
Confidence 3432 2 345444333310 00001222 4677899999999999999999998765 567778887777777777777
Q ss_pred HHHHH
Q 048530 170 VIRAL 174 (280)
Q Consensus 170 ~IR~l 174 (280)
+||.+
T Consensus 134 ~i~~l 138 (139)
T TIGR02284 134 VIRAL 138 (139)
T ss_pred HHHhc
Confidence 77754
No 20
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=88.60 E-value=9.7 Score=31.31 Aligned_cols=126 Identities=13% Similarity=-0.057 Sum_probs=91.0
Q ss_pred chhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CC
Q 048530 11 DVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVK-GF 89 (280)
Q Consensus 11 D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-av 89 (280)
..+.||=|+.-|+-....|..-+.- ++.-++ +.+...+..++..|..|..-+.+.|. -.
T Consensus 2 t~~~L~~a~~~E~~a~~~Y~~~a~~-------------------a~~~g~-~~~a~~f~~~a~eE~~HA~~~~~~l~~l~ 61 (134)
T cd01041 2 TEKNLLAAFAGESQARNRYTYFAEK-------------------ARKEGY-EQIARLFRATAENEKEHAKGHFKLLKGLG 61 (134)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHH-------------------HHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3578999999999988887765421 122333 56788999999999999998888876 22
Q ss_pred CCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccc-hhHHhhccccc---cCCChhHHHHHHHHHHhhh
Q 048530 90 PRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVPY-VGLTGYVGANP---KLQGAVSKRLVAGLLGVES 165 (280)
Q Consensus 90 ~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~-VGvtAY~Gaap---~l~~~~~l~aAa~Il~VEA 165 (280)
..|. . |-.++.+...-|..+.--|. .....|.-.+. .-.+..+....-.|+..|.
T Consensus 62 g~~~---~------------------~~~~~~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~~i~~~E~ 120 (134)
T cd01041 62 GGDT---G------------------PPIGIGDTLENLKAAIAGETYEYTEMYPEFAEVAEEEGFKEAARSFEAIAEAEK 120 (134)
T ss_pred CCCc---C------------------CCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2222 1 22345677777888888887 35577766554 4466778888889999999
Q ss_pred hhHHHHHHHHHh
Q 048530 166 GQDAVIRALLYE 177 (280)
Q Consensus 166 ~Haa~IR~lL~~ 177 (280)
+|.-++..+|..
T Consensus 121 ~H~~~l~~~l~~ 132 (134)
T cd01041 121 VHAERYKKALEN 132 (134)
T ss_pred HHHHHHHHHhhc
Confidence 999999988864
No 21
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=88.23 E-value=2.6 Score=31.49 Aligned_cols=56 Identities=16% Similarity=0.062 Sum_probs=45.6
Q ss_pred CCCchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhh
Q 048530 8 PGSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTV 86 (280)
Q Consensus 8 ~~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aL 86 (280)
..++.++|..++..|---..+|...... + -++.+++++..+..+|..|+..++..+
T Consensus 75 ~~~~~~~l~~~~~~E~~~~~~y~~~~~~----------------------~-~d~~~~~~~~~~~~~E~~H~~~~~~~~ 130 (130)
T cd00657 75 SDDPAEALRAALEVEARAIAAYRELIEQ----------------------A-DDPELRRLLERILADEQRHAAWFRKLL 130 (130)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHh----------------------c-CChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4566788999999999888999877521 1 168899999999999999999998753
No 22
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=80.58 E-value=4.4 Score=44.66 Aligned_cols=56 Identities=14% Similarity=0.184 Sum_probs=46.9
Q ss_pred CCchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHH-HHHHHHHHHHhHHHHHHHHHHhhc
Q 048530 9 GSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPF-TNDVVLQFAWQEVGHLRAIKKTVK 87 (280)
Q Consensus 9 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~-v~~~~~eia~~E~~HV~~L~~aLg 87 (280)
.++.++|.+|+-.|.=--+||...+.. + -|+. .+.++++|+..|..|++.|++.+.
T Consensus 940 ~~~~~al~lAm~~Ekdai~fY~~la~~----------------------~-~d~e~~k~l~~~LA~EEk~Hl~~L~~~~d 996 (1006)
T PRK12775 940 DDPGNLFRIAIEFERRAVKFFKERVAE----------------------T-PDGSVERQLYKELAAEEREHVALLTTEFE 996 (1006)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhh----------------------C-CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999998621 1 1344 699999999999999999998875
No 23
>PF09968 DUF2202: Uncharacterized protein domain (DUF2202); InterPro: IPR019243 This domain, found in various hypothetical archaeal proteins, has no known function.; PDB: 3Q4O_A 3Q4Q_A 3Q4R_A 3Q4N_A.
Probab=80.18 E-value=41 Score=29.70 Aligned_cols=149 Identities=15% Similarity=0.159 Sum_probs=92.9
Q ss_pred hhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc--CC
Q 048530 12 VDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVK--GF 89 (280)
Q Consensus 12 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg--av 89 (280)
.+-|-|.+-=|+|.-..|..-...|| ..++..|+.-|+.|..+++..+. ++
T Consensus 2 ~~~Ll~m~EEEKlArDvY~~l~~~~g---------------------------~~~F~NIa~SEq~Hmdav~~Ll~kY~l 54 (162)
T PF09968_consen 2 IEGLLYMREEEKLARDVYLTLYEKWG---------------------------LPIFNNIARSEQRHMDAVKALLEKYGL 54 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcC---------------------------ChHhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45688999999999999988753332 46688999999999999999999 88
Q ss_pred CCccccCCcchHHH-----HHHHhc--CCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccccCCChhHHHHHHHHHH
Q 048530 90 PRPLLDLSAGSFAK-----VIDKAF--GKPLNPPFDPYANSINYLIASYLVPYVGLTGYVGANPKLQGAVSKRLVAGLLG 162 (280)
Q Consensus 90 ~~P~id~s~~~F~~-----~~~~A~--g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~ 162 (280)
+-|.-+...+.|+. +-+... |. .+...=|.....+|.+-..=+.-+...-.+++++..=-.++.
T Consensus 55 ~dP~~~~~~G~f~~~~lq~LY~~Lv~~G~---------~S~~dAl~vga~iEe~dI~DL~~~l~~t~~~Di~~Vy~nL~~ 125 (162)
T PF09968_consen 55 EDPVEGDPVGVFTNPELQELYNQLVEQGS---------KSLEDALKVGALIEELDIADLEEALARTDNEDIKTVYENLRR 125 (162)
T ss_dssp --S-SS-STT--SSHHHHHHHHHHHHHHT---------S-HHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred CCCCccCCCCCcCcHHHHHHHHHHHHHhh---------hcHHHHHHHhHHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 88887765445541 111110 11 344555667778888888888888888888888877777776
Q ss_pred hhhhhHHHHHHHHHhhhhcccCCCCccHHHHHHHH
Q 048530 163 VESGQDAVIRALLYEKANEKVYPYGIPVAVFTNKI 197 (280)
Q Consensus 163 VEA~Haa~IR~lL~~~~~~~v~Py~~tV~~~t~~I 197 (280)
--..|-......|-..+. .-.|--++-.+|-.-|
T Consensus 126 gS~NHLrAF~r~L~~~g~-~Y~pq~ls~~e~~~i~ 159 (162)
T PF09968_consen 126 GSRNHLRAFVRQLERYGV-TYTPQYLSQEEFEAIL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHTT------SSS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-CCCCeecCHHHHHHHH
Confidence 666786544445555553 4566667777765544
No 24
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=79.17 E-value=4.8 Score=33.15 Aligned_cols=58 Identities=17% Similarity=0.004 Sum_probs=45.3
Q ss_pred CchhhhhhhHhHHHHHH-HHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 048530 10 SDVDLLEFPLNLEYLEA-EFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVK 87 (280)
Q Consensus 10 ~D~diLNFALnLEyLEa-~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 87 (280)
+..++|..++..|.-|+ +.|...+. . + ...=|..+.+.+++|..+|..|++.|+..|+
T Consensus 73 ~~~~~l~~~~~~E~~e~~~~y~~~~~-----~--------------A-~~e~d~~~~~~f~~i~~~E~~H~~~l~~~l~ 131 (134)
T cd01041 73 DTLENLKAAIAGETYEYTEMYPEFAE-----V--------------A-EEEGFKEAARSFEAIAEAEKVHAERYKKALE 131 (134)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHH-----H--------------H-HHcCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44589999999999877 77777652 0 0 1112578899999999999999999999876
No 25
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=78.41 E-value=36 Score=27.87 Aligned_cols=115 Identities=14% Similarity=0.067 Sum_probs=81.8
Q ss_pred hhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCc
Q 048530 13 DLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVKGFPRP 92 (280)
Q Consensus 13 diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLgav~~P 92 (280)
+-||=+++-|.-+...|..-+.- ++.-++ +.+...+..++..|..|...+.+.++.++
T Consensus 4 ~~L~~a~~~E~~a~~~Y~~~a~~-------------------a~~eG~-~~~A~~f~~~a~eE~~HA~~~~~~l~~i~-- 61 (123)
T cd01046 4 EDLEANFKGETTEVGMYLAMARV-------------------AQREGY-PEVAEELKRIAMEEAEHAARFAELLGKVS-- 61 (123)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHH-------------------HHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCc--
Confidence 56889999999999999876421 223344 56889999999999999999999886543
Q ss_pred cccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccc---cCCChhHHHHHHHHHHhhhhhHH
Q 048530 93 LLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVPYVGLTGYVGANP---KLQGAVSKRLVAGLLGVESGQDA 169 (280)
Q Consensus 93 ~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap---~l~~~~~l~aAa~Il~VEA~Haa 169 (280)
.|...-|..+.--|.-.+..|...+- .-.+.+....--.|+.+|-.|.-
T Consensus 62 ----------------------------~~~~~~le~a~~~E~~~~~~~~~~~~~A~~egd~~~~~~~~~~~~~E~~H~~ 113 (123)
T cd01046 62 ----------------------------EDTKENLEMMLEGEAGANEGKKDAATEAKAEGLDEAHDFFHEAAKDEARHGK 113 (123)
T ss_pred ----------------------------ccHHHHHHHHHHhHHHHHHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 12223344444455444444544333 44567778888899999999999
Q ss_pred HHHHHHHh
Q 048530 170 VIRALLYE 177 (280)
Q Consensus 170 ~IR~lL~~ 177 (280)
+++.+|..
T Consensus 114 ~~~~~l~~ 121 (123)
T cd01046 114 MLKGLLER 121 (123)
T ss_pred HHHHHHhh
Confidence 99988764
No 26
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=74.30 E-value=52 Score=27.70 Aligned_cols=130 Identities=16% Similarity=0.054 Sum_probs=92.2
Q ss_pred hhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCC
Q 048530 12 VDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVK-GFP 90 (280)
Q Consensus 12 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-av~ 90 (280)
++.||=+|+-||.-...|..-..-. . .-++ +.+...+...+.+|..|..-|-.-|- =..
T Consensus 8 ~~~LN~~l~~E~~a~~~Y~~~~~~~--~-----------------~~~~-~g~a~~~~~~a~EE~~Ha~~laeri~~lGg 67 (157)
T TIGR00754 8 IQHLNKQLTNELTAINQYFLHARMQ--K-----------------NWGL-KELADHEYHESIDEMKHADEIIERILFLEG 67 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--H-----------------cCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 5789999999997766665543211 0 0111 33556778888899999998887654 112
Q ss_pred CccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccc---cCCChhHHHHHHHHHHhhhhh
Q 048530 91 RPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVPYVGLTGYVGANP---KLQGAVSKRLVAGLLGVESGQ 167 (280)
Q Consensus 91 ~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap---~l~~~~~l~aAa~Il~VEA~H 167 (280)
+|.+. ++. +..+-.+....+-...-.|......|..... ...++......-.|+.-|-.|
T Consensus 68 ~p~~~----------------~i~-~~~~~~~~~e~l~~~l~~E~~~~~~~~e~i~~A~~~~D~~t~~ll~~~i~eee~h 130 (157)
T TIGR00754 68 LPNLQ----------------DLG-KLRIGETVREMLEADLALELDVLNRLKEAIAYAEEVRDYVSRDLLEEILEDEEEH 130 (157)
T ss_pred CCCCC----------------cCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 33321 111 1223357778899999999999999998854 677888888889999999999
Q ss_pred HHHHHHHHHhh
Q 048530 168 DAVIRALLYEK 178 (280)
Q Consensus 168 aa~IR~lL~~~ 178 (280)
.-++|+.|...
T Consensus 131 ~~~l~~~l~~~ 141 (157)
T TIGR00754 131 IDWLETQLELI 141 (157)
T ss_pred HHHHHHHHHHH
Confidence 99999998853
No 27
>PF14530 DUF4439: Domain of unknown function (DUF4439); PDB: 2IB0_B.
Probab=74.19 E-value=13 Score=31.46 Aligned_cols=98 Identities=15% Similarity=0.107 Sum_probs=66.1
Q ss_pred cCCCHHHHHHHHHHHHhHHHHHHHHHHhhc--C----CCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHh
Q 048530 58 ANLDPFTNDVVLQFAWQEVGHLRAIKKTVK--G----FPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASY 131 (280)
Q Consensus 58 a~l~~~v~~~~~eia~~E~~HV~~L~~aLg--a----v~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~ 131 (280)
+.+++..+..+.+...........|...|. + .+.|.|.+ || |-+|+.+-+..+.
T Consensus 21 a~~~~~~r~~~~~~~~~HR~rRd~l~~~l~~~g~~~p~~~aaY~l-------------------P~-~v~d~~sa~~la~ 80 (131)
T PF14530_consen 21 ARLDGDRRAAARAALAAHRARRDALAAALRAAGATPPPPEAAYQL-------------------PF-PVTDPASAAALAA 80 (131)
T ss_dssp HHS-GGGHHHHHHHHHHHHHHHHHHHHHHHHTT-------SS----------------------SS----SHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCC-------------------CC-CCCCHHHHHHHHH
Confidence 345677788888888888888888888887 2 22333433 55 4588888898899
Q ss_pred hccchhHHhhccccccCCChhHHHHHHHHHHhhhhhHHHHHHHHH
Q 048530 132 LVPYVGLTGYVGANPKLQGAVSKRLVAGLLGVESGQDAVIRALLY 176 (280)
Q Consensus 132 ~~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~VEA~Haa~IR~lL~ 176 (280)
.+|.=-..+|.... .-++.+.+..+...|..-+.-+.-.|..+.
T Consensus 81 ~lE~~~a~aw~~lv-~a~~~~~R~~av~aL~~aA~ra~~W~~~~g 124 (131)
T PF14530_consen 81 ALEDDCAAAWRALV-AATDPALRRFAVDALTEAAVRAARWRAAAG 124 (131)
T ss_dssp HHHHHHHHHHHHHH-H--SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hcCChhHHHHHHHHHHHHHHHHHHhccccC
Confidence 99998899999988 888889999888888776665555554443
No 28
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=73.16 E-value=12 Score=33.03 Aligned_cols=105 Identities=16% Similarity=0.127 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHH
Q 048530 61 DPFTNDVVLQFAWQEVGHLRAIKKTVK-GFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVPYVGLT 139 (280)
Q Consensus 61 ~~~v~~~~~eia~~E~~HV~~L~~aLg-av~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvt 139 (280)
++.++..+++++.+|..|+....+.|. --.||.+-.. -| .++.-++|. .-....+...+..-...|.+-..
T Consensus 28 ~~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~P--lW-~~~gf~lG~-----~tal~G~~~a~~~~~avE~~V~~ 99 (165)
T cd01042 28 DPAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLLP--LW-YVAGFALGA-----LTALLGKKAAMACTAAVETVVEE 99 (165)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHH--HH-HHHHHHHHH-----HHHhhChHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999987 3445543221 11 111111111 00112344455556667888888
Q ss_pred hhccccccCC---ChhHHHHHHHHHHhhhhhHHHHHH
Q 048530 140 GYVGANPKLQ---GAVSKRLVAGLLGVESGQDAVIRA 173 (280)
Q Consensus 140 AY~Gaap~l~---~~~~l~aAa~Il~VEA~Haa~IR~ 173 (280)
=|......|. ++.++.....+.--|..|.-.-..
T Consensus 100 Hy~~ql~~L~~~~d~~l~~~l~~~r~DE~~H~d~A~~ 136 (165)
T cd01042 100 HYNDQLRELPAQPDKELRAIIEQFRDDELEHADIAEE 136 (165)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999888887 788899999999999999865443
No 29
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=71.62 E-value=57 Score=27.05 Aligned_cols=129 Identities=13% Similarity=0.052 Sum_probs=79.3
Q ss_pred hhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCC
Q 048530 12 VDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVK-GFP 90 (280)
Q Consensus 12 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-av~ 90 (280)
++.||=+++.|+--...|+.-+.-. + +.++ +.+...++..+.+|..|...|-+-+- --.
T Consensus 5 ~~~Ln~~~~~El~A~~~Yl~~a~~~--~-----------------~~~~-~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg 64 (156)
T cd01055 5 EKALNEQINLELYSSYLYLAMAAWF--D-----------------SKGL-DGFANFFRVQAQEEREHAMKFFDYLNDRGG 64 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--h-----------------hcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4679999999999999888764211 1 1123 56788999999999999998887763 111
Q ss_pred CccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhcccccc---CCChhHHHHHHHHHHhhhhh
Q 048530 91 RPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVPYVGLTGYVGANPK---LQGAVSKRLVAGLLGVESGQ 167 (280)
Q Consensus 91 ~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~---l~~~~~l~aAa~Il~VEA~H 167 (280)
.|.+.- +.++-..+.+....|..+.-.|.--...|.-.... ..++......--|+..|..|
T Consensus 65 ~~~~~~----------------~~~~~~~~~~~~~~l~~al~~E~~~~~~~~~l~~~A~~~~D~~~~~~l~~~l~~q~e~ 128 (156)
T cd01055 65 RVELPA----------------IEAPPSEFESLLEVFEAALEHEQKVTESINNLVDLALEEKDYATFNFLQWFVKEQVEE 128 (156)
T ss_pred CeeCCC----------------CCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHH
Confidence 222110 00011134677788888888888777777655443 23444444444555555555
Q ss_pred HHHHHHHHH
Q 048530 168 DAVIRALLY 176 (280)
Q Consensus 168 aa~IR~lL~ 176 (280)
...++.++.
T Consensus 129 ~~~~~~~l~ 137 (156)
T cd01055 129 EALARDILD 137 (156)
T ss_pred HHHHHHHHH
Confidence 555555444
No 30
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=71.22 E-value=20 Score=31.62 Aligned_cols=106 Identities=19% Similarity=0.166 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhc--CCCCc-----cccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccc
Q 048530 63 FTNDVVLQFAWQEVGHLRAIKKTVK--GFPRP-----LLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVPY 135 (280)
Q Consensus 63 ~v~~~~~eia~~E~~HV~~L~~aLg--av~~P-----~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~ 135 (280)
..+.++++-...-..|.+.|..-|- ++.-| ..|+|++.-+ .| |-||| |...+|.+.---|-
T Consensus 50 ~~keiae~Ar~E~r~H~e~i~~Ri~elg~~~Prd~~~l~dISgC~~a---------~L--Pedp~-D~~~~l~vlv~AE~ 117 (172)
T COG2406 50 GIKEIAEEAREEDRKHFELIAPRIYELGGDLPRDMKKLHDISGCKPA---------YL--PEDPY-DIDEILAVLVKAER 117 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHhhcCCCCC---------CC--CCCcc-CHHHHHHHHHHHHH
Confidence 4555566666666789999988765 33333 2344432111 11 45664 45678888878899
Q ss_pred hhHHhhccccccCC--ChhHHHHHHHHHHhhhhhHHHHHHHHHhhhh
Q 048530 136 VGLTGYVGANPKLQ--GAVSKRLVAGLLGVESGQDAVIRALLYEKAN 180 (280)
Q Consensus 136 VGvtAY~Gaap~l~--~~~~l~aAa~Il~VEA~Haa~IR~lL~~~~~ 180 (280)
-.+.+|+=.-.+-. ++..-.+|-.||--|-.|.+|+-.+|++.+.
T Consensus 118 CAir~ykeic~~T~GkDprTyeLa~~IL~eEi~hr~~~~~ll~~~~s 164 (172)
T COG2406 118 CAIRAYKEICNLTAGKDPRTYELAEAILREEIEHRTWFLELLGKEPS 164 (172)
T ss_pred HHHHHHHHHHccccCCCcchHHHHHHHHHHHHHHHHHHHHHhccCch
Confidence 99999997766554 4456789999999999999999999998654
No 31
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=67.87 E-value=11 Score=33.24 Aligned_cols=33 Identities=24% Similarity=0.222 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCcc
Q 048530 61 DPFTNDVVLQFAWQEVGHLRAIKKTVK-GFPRPL 93 (280)
Q Consensus 61 ~~~v~~~~~eia~~E~~HV~~L~~aLg-av~~P~ 93 (280)
++.++..++++..+|..|+...++.|. --.||.
T Consensus 31 ~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS 64 (172)
T PF03232_consen 31 DPELRPFLKEMAEEEKDHLAWFEQLLPELRVRPS 64 (172)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHcCCCCc
Confidence 688999999999999999999999987 233564
No 32
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=67.65 E-value=20 Score=29.93 Aligned_cols=55 Identities=20% Similarity=0.050 Sum_probs=46.8
Q ss_pred CCCCchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHH
Q 048530 7 VPGSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKK 84 (280)
Q Consensus 7 ~~~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~ 84 (280)
...+|.+.|+.+...|-.-.+||...+... -++.++.++..++.-|..|.+...+
T Consensus 79 ~~~s~~~al~~g~~~E~~~i~~ye~~~~~~-----------------------~d~d~k~v~~~L~~~e~~H~~~f~~ 133 (135)
T cd01048 79 GPKSLQDALEVGVLIEELDIADYDRLLERT-----------------------QNPDIRDVFENLQAASRNHHLPFFR 133 (135)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------------ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999987321 2589999999999999999886543
No 33
>PF11272 DUF3072: Protein of unknown function (DUF3072); InterPro: IPR021425 This bacterial family of proteins has no known function.
Probab=66.76 E-value=15 Score=27.16 Aligned_cols=39 Identities=21% Similarity=0.334 Sum_probs=32.0
Q ss_pred hhhHHHHHHHHHhhhhcccCCCCccHHHHHHHHHHHHHhhC
Q 048530 165 SGQDAVIRALLYEKANEKVYPYGIPVAVFTNKISQLRNTLG 205 (280)
Q Consensus 165 A~Haa~IR~lL~~~~~~~v~Py~~tV~~~t~~IS~lR~~L~ 205 (280)
+.|++.+|+|.-+.++. + |-++|.+|...+|-.||.+.+
T Consensus 18 ~aQ~syL~tL~e~Age~-~-~~~LtkaeAs~rId~L~~~~g 56 (57)
T PF11272_consen 18 GAQASYLKTLSEEAGEP-F-PDDLTKAEASERIDELQAQTG 56 (57)
T ss_pred HHHHHHHHHHHHHhCCC-C-CCcccHHHHHHHHHHHHHHhC
Confidence 56889999998887733 2 338999999999999999875
No 34
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=63.31 E-value=72 Score=25.08 Aligned_cols=132 Identities=16% Similarity=0.137 Sum_probs=93.6
Q ss_pred hhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc---C
Q 048530 12 VDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVK---G 88 (280)
Q Consensus 12 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg---a 88 (280)
++.||-++++|+--...|..-..=. . ..++ +.+..++++.+.+|..|..-+-.-+. +
T Consensus 1 i~~Ln~~l~~e~~~~~~y~~~~~~~---------~----------~~~~-~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg 60 (142)
T PF00210_consen 1 IEALNEQLALELQASQQYLNMHWNF---------D----------GPNF-PGLAKFFQDQAEEEREHADELAERILMLGG 60 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------H----------STTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh---------c----------CCCc-hhhHHHhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4679999999998888888764210 0 0112 56889999999999999999987754 4
Q ss_pred CCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccccC---CChhHHHHHHHHHHhhh
Q 048530 89 FPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVPYVGLTGYVGANPKL---QGAVSKRLVAGLLGVES 165 (280)
Q Consensus 89 v~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~l---~~~~~l~aAa~Il~VEA 165 (280)
.|.... ..+..+ . .|+= +.+...-|..+.-.|......|....... .|+......-.++.-|.
T Consensus 61 ~p~~~~----~~~~~~----~----~~~~--~~~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~~D~~t~~~~~~~l~~~~ 126 (142)
T PF00210_consen 61 KPSGSP----VEIPEI----P----KPPE--WTDPREALEAALEDEKEIIEEYRELIKLAEKEGDPETADFLDEFLEEEE 126 (142)
T ss_dssp -SSTSH----HHHHHH----H----SSSS--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred CCCCcH----HHhhhh----h----cccc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 443321 112211 0 0111 56888899999888999999998887766 57777788888888888
Q ss_pred hhHHHHHHHHHh
Q 048530 166 GQDAVIRALLYE 177 (280)
Q Consensus 166 ~Haa~IR~lL~~ 177 (280)
.|.-.++..|..
T Consensus 127 ~~~~~l~~~l~~ 138 (142)
T PF00210_consen 127 KHIWMLQAHLTN 138 (142)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877765
No 35
>PRK10635 bacterioferritin; Provisional
Probab=61.74 E-value=21 Score=30.89 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=48.1
Q ss_pred CchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 048530 10 SDVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVK 87 (280)
Q Consensus 10 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 87 (280)
+=.++|...|.+|+=-.+-|..++. ++ ...-|...++++++|-.+|..|...|++.|+
T Consensus 82 ~v~eml~~dl~~E~~ai~~y~e~i~----------~a----------~~~~D~~s~~ll~~iL~dEe~H~~~le~~l~ 139 (158)
T PRK10635 82 DVEEMLRSDLRLELEGAKDLREAIA----------YA----------DSVHDYVSRDMMIEILADEEGHIDWLETELD 139 (158)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH----------HH----------HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468999999999999999999862 00 1124788999999999999999999999886
No 36
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=58.62 E-value=43 Score=26.39 Aligned_cols=104 Identities=17% Similarity=0.161 Sum_probs=51.1
Q ss_pred hhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCC
Q 048530 12 VDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVK-GFP 90 (280)
Q Consensus 12 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-av~ 90 (280)
++.||=.|..+|=-.+.|..++. + +. ++..+.++++++.+...|+.-|+..|. -..
T Consensus 3 i~~Ln~Ll~~~~d~~~~Y~~a~~-----~-----------------~~-~~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg 59 (111)
T PF09537_consen 3 IEALNDLLKGLHDGIEGYEKAAE-----K-----------------AE-DPELKSLFQEFAQERQQHAEELQAEIQELGG 59 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----H--------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----H-----------------CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 57899999999999999999972 2 11 689999999999999999999999987 223
Q ss_pred CccccCCcchHHHHHHHhcCCCCCCCCCCCCChHH-HHHHHhhccchhHHhhccc
Q 048530 91 RPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSIN-YLIASYLVPYVGLTGYVGA 144 (280)
Q Consensus 91 ~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~-FL~~A~~~E~VGvtAY~Ga 144 (280)
.|.-+ ++|...+..+.- .+.--|. .++.. +|..+.-=|+.++.+|.=+
T Consensus 60 ~p~~~---gs~~g~~~r~~~-~ik~~~~--~~d~~aiL~~~~~gE~~~~~~y~~a 108 (111)
T PF09537_consen 60 EPEES---GSFKGALHRAWM-DIKSALG--GDDDEAILEECERGEDMALEAYEDA 108 (111)
T ss_dssp -H-------HHCHHHH-TTT-HHHHS-------H---------------------
T ss_pred CcCcc---cCHHHHHHHHHH-HHHHHhc--CCCccchhhhhhhhhhhhhhhcccc
Confidence 34322 244444443310 0000011 23333 6666666688888777643
No 37
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=57.53 E-value=37 Score=30.02 Aligned_cols=56 Identities=16% Similarity=0.071 Sum_probs=46.4
Q ss_pred CCchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 048530 9 GSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVK 87 (280)
Q Consensus 9 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 87 (280)
.+..+.|.+|.-.|.---+||...+. .-.+..++.++++++.||.+|++.|+.-+.
T Consensus 112 ~~~~~~I~~a~~~E~~t~~~Y~~~~~-----------------------~~~~~~~~~~~~~~a~~E~~H~~~l~~~~~ 167 (176)
T COG1633 112 VSYLEAIEAAMEAEKDTIEFYEELLD-----------------------ELVNEEAKKLFKTIADDEKGHASGLLSLYN 167 (176)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577899999999999999999862 123577888999999999999999998665
No 38
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=56.69 E-value=35 Score=28.09 Aligned_cols=58 Identities=17% Similarity=0.129 Sum_probs=47.7
Q ss_pred CchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 048530 10 SDVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVK 87 (280)
Q Consensus 10 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 87 (280)
+..++|+.++..|.--.+-|..... . + ...-|+.+.++++.|..+|..|..+|++.++
T Consensus 81 ~~~~~l~~~l~~E~~~~~~y~~~~~-----~-----A----------~~~~D~~t~~~l~~~~~~e~~h~~~l~~~l~ 138 (153)
T cd00907 81 DVPEMLENDLALEYEAIAALNEAIA-----L-----C----------EEVGDYVSRDLLEEILEDEEEHIDWLETQLD 138 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH-----H-----H----------HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999988741 0 0 1123788999999999999999999999886
No 39
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=56.26 E-value=28 Score=28.47 Aligned_cols=59 Identities=20% Similarity=0.003 Sum_probs=45.9
Q ss_pred CCchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 048530 9 GSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVK 87 (280)
Q Consensus 9 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 87 (280)
.+-.++|+-++..|.-+.+-|...+. . +++- =+..+.+.+..++.+|..|++.++.+|.
T Consensus 62 ~~~~~~le~a~~~E~~~~~~~~~~~~-----~--------------A~~e-gd~~~~~~~~~~~~~E~~H~~~~~~~l~ 120 (123)
T cd01046 62 EDTKENLEMMLEGEAGANEGKKDAAT-----E--------------AKAE-GLDEAHDFFHEAAKDEARHGKMLKGLLE 120 (123)
T ss_pred ccHHHHHHHHHHhHHHHHHhHHHHHH-----H--------------HHHc-CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34468999999999999988865541 0 1111 1578999999999999999999999875
No 40
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=54.48 E-value=18 Score=35.64 Aligned_cols=55 Identities=15% Similarity=0.218 Sum_probs=50.1
Q ss_pred HHHHHHHhhccchhHHhhccccccCC--ChhHHHHHHHHHHhhhhhHHHHHHHHHhh
Q 048530 124 INYLIASYLVPYVGLTGYVGANPKLQ--GAVSKRLVAGLLGVESGQDAVIRALLYEK 178 (280)
Q Consensus 124 ~~FL~~A~~~E~VGvtAY~Gaap~l~--~~~~l~aAa~Il~VEA~Haa~IR~lL~~~ 178 (280)
.+||.-|-+=|--|---|+=....|+ ||.+.+.-.=+.--||||+|.|+-.+..-
T Consensus 85 idFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df 141 (355)
T PRK13654 85 IDFLERSCTAEFSGFLLYKELSRRLKDRNPLLAELFQLMARDEARHAGFLNKAMKDF 141 (355)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHhccccCcHHHHHHHHHhhhHHHHhhhHHHHHHHc
Confidence 47999999999999999999999998 99999988888899999999999887763
No 41
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=53.00 E-value=18 Score=35.09 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=49.3
Q ss_pred HHHHHHHhhccchhHHhhccccccCCC--hhHHHHHHHHHHhhhhhHHHHHHHHHhh
Q 048530 124 INYLIASYLVPYVGLTGYVGANPKLQG--AVSKRLVAGLLGVESGQDAVIRALLYEK 178 (280)
Q Consensus 124 ~~FL~~A~~~E~VGvtAY~Gaap~l~~--~~~l~aAa~Il~VEA~Haa~IR~lL~~~ 178 (280)
.+||.-|-+=|--|---|+=....++| |.+.+.-.=+.--||||+|.|+-.+..-
T Consensus 65 idFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df 121 (323)
T cd01047 65 LEFLERSCTSEFSGFLLYKELGRRLKNTNPVVAELFRLMARDEARHAGFLNKALSDF 121 (323)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHcccCCcHHHHHHHHHhhhHHHHhhhHHHHHHHc
Confidence 479999999999999999999999966 8888888888889999999999887763
No 42
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=50.35 E-value=41 Score=27.91 Aligned_cols=58 Identities=17% Similarity=0.032 Sum_probs=47.0
Q ss_pred CchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 048530 10 SDVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVK 87 (280)
Q Consensus 10 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 87 (280)
+-.++|.-+|++|.--.+-|..... ++ ...-|+.+.+++++|..+|+.|++-+++.+.
T Consensus 80 ~~~~~l~~al~~E~~~~~~~~~l~~----------~A----------~~~~D~~~~~~l~~~l~~q~e~~~~~~~~l~ 137 (156)
T cd01055 80 SLLEVFEAALEHEQKVTESINNLVD----------LA----------LEEKDYATFNFLQWFVKEQVEEEALARDILD 137 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH----------HH----------HHcCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458999999999999999988752 00 0113688999999999999999999999887
No 43
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=48.48 E-value=53 Score=25.85 Aligned_cols=58 Identities=21% Similarity=0.105 Sum_probs=47.5
Q ss_pred CchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 048530 10 SDVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVK 87 (280)
Q Consensus 10 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 87 (280)
+-.++|.-+|..|.--.+.|..... . + ...-|+.+.+++.++-.+|..|++.|++.|.
T Consensus 80 ~~~~~l~~~l~~e~~~~~~~~~l~~-----~-----a----------~~~~D~~t~~~~~~~l~~~~~~~~~l~~~l~ 137 (142)
T PF00210_consen 80 DPREALEAALEDEKEIIEEYRELIK-----L-----A----------EKEGDPETADFLDEFLEEEEKHIWMLQAHLT 137 (142)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH-----H-----H----------HHTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-----H-----H----------HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5578999999999999999988752 1 0 0113789999999999999999999998875
No 44
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=47.02 E-value=25 Score=34.33 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=48.0
Q ss_pred HHHHHHHhhccchhHHhhccccccCCChh--HHHHHHHHHHhhhhhHHHHHHHHHhh
Q 048530 124 INYLIASYLVPYVGLTGYVGANPKLQGAV--SKRLVAGLLGVESGQDAVIRALLYEK 178 (280)
Q Consensus 124 ~~FL~~A~~~E~VGvtAY~Gaap~l~~~~--~l~aAa~Il~VEA~Haa~IR~lL~~~ 178 (280)
..||.-|-+=|--|---|+=....++|++ +.+.-.=+.--||||+|.|+-.+..-
T Consensus 75 idFLerScTaEFSGflLYKEl~rrlk~~~P~lae~F~~MaRDEARHAGFlNkam~df 131 (337)
T TIGR02029 75 IEFLERSCTSEFSGFLLYKELSRRLKNRDPVVAELFQLMARDEARHAGFLNKALGDF 131 (337)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHhcCCCChHHHHHHHHHhhhhHHHhhhHHHHHHHc
Confidence 47999999999999999999999996655 77888888888999999999887763
No 45
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=46.85 E-value=34 Score=32.06 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCccccCCcchHHHHHHHhcCCCCCCCCC
Q 048530 61 DPFTNDVVLQFAWQEVGHLRAIKKTVK-GFPRPLLDLSAGSFAKVIDKAFGKPLNPPFD 118 (280)
Q Consensus 61 ~~~v~~~~~eia~~E~~HV~~L~~aLg-av~~P~id~s~~~F~~~~~~A~g~~l~p~Fd 118 (280)
|.....+++.|-.+|++||++=.+=+. -..+...|-- ..|-.+++.-+...+.+|||
T Consensus 180 D~~sa~iL~~I~~DEi~HV~~G~rWf~~~c~~~~~~p~-~~f~~lv~~~~~~~~k~pfN 237 (253)
T PF04305_consen 180 DEESAAILEIILRDEIGHVAIGNRWFRYLCEQRGLDPW-ETFRELVRQYFRGKLKGPFN 237 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHH-HHHHHHHHHhCCCCCCCCCC
Confidence 567889999999999999987544443 2222222211 35888887777777888886
No 46
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=46.83 E-value=72 Score=27.53 Aligned_cols=55 Identities=18% Similarity=0.062 Sum_probs=46.1
Q ss_pred CchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 048530 10 SDVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVK 87 (280)
Q Consensus 10 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 87 (280)
+-+.+|...+..|.--..-|.+-.. ... |+.+++++..|..+|..|...++++|.
T Consensus 99 d~~~~L~~ni~aE~~Ai~~Y~~l~~----------------------~~~-Dp~v~~~l~~I~~rE~~H~~~f~~~l~ 153 (156)
T cd01051 99 NLVADLRSNIAAESRARLTYERLYE----------------------MTD-DPGVKDTLSFLLVREIVHQNAFGKALE 153 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH----------------------HcC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788999999999999988752 111 799999999999999999999999875
No 47
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=46.73 E-value=26 Score=34.43 Aligned_cols=55 Identities=13% Similarity=0.145 Sum_probs=49.0
Q ss_pred HHHHHHHhhccchhHHhhccccccCCC--hhHHHHHHHHHHhhhhhHHHHHHHHHhh
Q 048530 124 INYLIASYLVPYVGLTGYVGANPKLQG--AVSKRLVAGLLGVESGQDAVIRALLYEK 178 (280)
Q Consensus 124 ~~FL~~A~~~E~VGvtAY~Gaap~l~~--~~~l~aAa~Il~VEA~Haa~IR~lL~~~ 178 (280)
..||.-|-+=|--|---|+=....|+| |.+.+.-.=+.--||||+|.|+-.+..-
T Consensus 81 idFLerScTaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df 137 (351)
T CHL00185 81 VEFLERSCTAEFSGFLLYKELSRKLKDKNPLLAEGFLLMSRDEARHAGFLNKAMSDF 137 (351)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHhccCCcHHHHHHHHHhhhhHHHhhhHHHHHHHc
Confidence 479999999999999999999999955 8888888888889999999999887763
No 48
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=44.87 E-value=25 Score=34.61 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=48.5
Q ss_pred HHHHHHHhhccchhHHhhccccccCCC--hhHHHHHHHHHHhhhhhHHHHHHHHHh
Q 048530 124 INYLIASYLVPYVGLTGYVGANPKLQG--AVSKRLVAGLLGVESGQDAVIRALLYE 177 (280)
Q Consensus 124 ~~FL~~A~~~E~VGvtAY~Gaap~l~~--~~~l~aAa~Il~VEA~Haa~IR~lL~~ 177 (280)
..||.-|-+=|--|---|+=....|+| |.+.+.-.=+.--||||+|.|+-.+..
T Consensus 81 idFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~D 136 (357)
T PLN02508 81 IEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFTLMSRDEARHAGFLNKALSD 136 (357)
T ss_pred HHHHHhhhhhhcccchHHHHHHHhcccCChHHHHHHHHhCchhHHHHhHHHHHHHH
Confidence 479999999999999999999999955 888888888888999999999988776
No 49
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=40.30 E-value=51 Score=30.12 Aligned_cols=33 Identities=21% Similarity=0.162 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCcc
Q 048530 61 DPFTNDVVLQFAWQEVGHLRAIKKTVK-GFPRPL 93 (280)
Q Consensus 61 ~~~v~~~~~eia~~E~~HV~~L~~aLg-av~~P~ 93 (280)
++..+-.++|.++||+.|.....+-|- ---||.
T Consensus 69 ~~~~R~~l~em~d~E~~HL~~f~~~l~e~~vRPs 102 (204)
T COG2941 69 SPEPRIQLKEMADEEIDHLAWFEQRLLELGVRPS 102 (204)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 356677999999999999999988776 444564
No 50
>PF11220 DUF3015: Protein of unknown function (DUF3015); InterPro: IPR021383 This bacterial family of proteins has no known function.
Probab=39.16 E-value=66 Score=27.86 Aligned_cols=64 Identities=17% Similarity=0.103 Sum_probs=47.5
Q ss_pred HhhccchhHHhhccccccCCChhHHHHHHHHHHhhhhhHHHHHHHHHhhhhcccCCCCccHHHHHHHHHH
Q 048530 130 SYLVPYVGLTGYVGANPKLQGAVSKRLVAGLLGVESGQDAVIRALLYEKANEKVYPYGIPVAVFTNKISQ 199 (280)
Q Consensus 130 A~~~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~VEA~Haa~IR~lL~~~~~~~v~Py~~tV~~~t~~IS~ 199 (280)
...++.+--=.-.|- =++|.+.+.+++|++.|.+.++..+.++-....+.-.+|-.++.++|-+
T Consensus 68 ~~n~d~La~DiA~G~------GE~L~ala~llgv~~~d~~~f~~~~q~nF~~if~s~~~t~~~v~~~i~~ 131 (144)
T PF11220_consen 68 NSNMDNLAQDIARGQ------GEHLDALAELLGVPAEDRAAFGAVLQENFASIFPSESVTSEEVLDNIVA 131 (144)
T ss_pred HHHHHHHHHHHHcCC------cchHHHHHHHhCCCHhhHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence 344555544444554 4578999999999999999999999999888777767777766666544
No 51
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=38.41 E-value=1.2e+02 Score=27.89 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=42.0
Q ss_pred hhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhcCCC-Ccc
Q 048530 15 LEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVKGFP-RPL 93 (280)
Q Consensus 15 LNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLgav~-~P~ 93 (280)
||-|+.||+-=---|+.+.+ ++. ...+..++..+++|+-+|.-|...--+.|.++. +|.
T Consensus 1 Lq~Ai~lE~atip~YL~a~y--Si~------------------~~~~~~~~~~i~~V~~eEMlHl~l~~Nll~alGg~P~ 60 (227)
T PF12902_consen 1 LQQAIELELATIPPYLTALY--SIK------------------PGTNEEARNLIRSVAIEEMLHLSLAANLLNALGGSPR 60 (227)
T ss_dssp -HHHHHHHHHHHHHHHHHHH--HBS-------------------TTSH-HHHHHHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred CcHHHHHHHHHHHHHHHHHc--ccC------------------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 67899999999999999874 221 112355899999999999999999887776332 255
Q ss_pred cc
Q 048530 94 LD 95 (280)
Q Consensus 94 id 95 (280)
++
T Consensus 61 l~ 62 (227)
T PF12902_consen 61 LT 62 (227)
T ss_dssp --
T ss_pred cc
Confidence 54
No 52
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=36.35 E-value=78 Score=28.02 Aligned_cols=50 Identities=14% Similarity=0.016 Sum_probs=43.7
Q ss_pred HhhccchhHHhhccccccCC-ChhHHHHHHHHHHhhhhhHHHHHHHHHhhh
Q 048530 130 SYLVPYVGLTGYVGANPKLQ-GAVSKRLVAGLLGVESGQDAVIRALLYEKA 179 (280)
Q Consensus 130 A~~~E~VGvtAY~Gaap~l~-~~~~l~aAa~Il~VEA~Haa~IR~lL~~~~ 179 (280)
-..-|.-.+.-|.|+.-.+. ++..+....-++..|..|-.+.+.+|.+++
T Consensus 10 dHAGE~~A~~iY~gQ~~~~~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~ 60 (172)
T PF03232_consen 10 DHAGEVGAVRIYRGQLAVARRDPELRPFLKEMAEEEKDHLAWFEQLLPELR 60 (172)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHcC
Confidence 33445566778999999999 999999999999999999999999999975
No 53
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=35.83 E-value=63 Score=26.22 Aligned_cols=55 Identities=9% Similarity=0.003 Sum_probs=48.4
Q ss_pred HHHHhhccchhHHhhccccccCCChhHHHHHHHHHHhhhhhHHHHHHHHHhhhhc
Q 048530 127 LIASYLVPYVGLTGYVGANPKLQGAVSKRLVAGLLGVESGQDAVIRALLYEKANE 181 (280)
Q Consensus 127 L~~A~~~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~VEA~Haa~IR~lL~~~~~~ 181 (280)
+...+-.|.-|..-|.-.+...+++..++.--.|...|-.|.-+++.++.+.+..
T Consensus 3 ~~~~~~~E~~~~~~Y~~la~~~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~ 57 (125)
T cd01044 3 LRKFQKDEITEAAIYRKLAKREKDPENREILLKLAEDERRHAEFWKKFLGKRGVP 57 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3455677888999999999999999999999999999999999999999887643
No 54
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=34.70 E-value=48 Score=30.84 Aligned_cols=111 Identities=11% Similarity=0.105 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHhhc--C----CCC-ccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhh
Q 048530 60 LDPFTNDVVLQFAWQEVGHLRAIKKTVK--G----FPR-PLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYL 132 (280)
Q Consensus 60 l~~~v~~~~~eia~~E~~HV~~L~~aLg--a----v~~-P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~ 132 (280)
.+...+.++.+.-.+|.-|+....+.+. + ++. |.. ..+....+.... -+.+.....-++....+
T Consensus 110 ~~~~~~~~~~~~i~DE~rH~~mf~~~~~~~~~~~~l~~~~~~----~~~~~~~~~l~~-----~~~~~~~~~~~~~~~lv 180 (304)
T PF11583_consen 110 PDDDAKRYALTEIADEARHSLMFARAINRTGRRRGLAPLPPP----YPPRRLLRRLAR-----LLPPWERGLLFFAFALV 180 (304)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----S------HHHHHHHHHHHT-----S-SHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCCCC----CchHHHHHHHHH-----hcccccchHHHHHHHHH
Confidence 3567788888888899999998887766 2 111 110 122222222221 12222334456667777
Q ss_pred ccchhHHhhccccccC--CChhHHHHHHHHHHhhhhhHHHHHHHHHhhhh
Q 048530 133 VPYVGLTGYVGANPKL--QGAVSKRLVAGLLGVESGQDAVIRALLYEKAN 180 (280)
Q Consensus 133 ~E~VGvtAY~Gaap~l--~~~~~l~aAa~Il~VEA~Haa~IR~lL~~~~~ 180 (280)
.|.+ ++.|.-....= ..|-+++...-.+.-|+||.++-|..+...-.
T Consensus 181 ~Ee~-i~~~~~~~~~D~~iqP~~r~v~~iH~~DEaRHi~f~~~~l~~~~~ 229 (304)
T PF11583_consen 181 AEEI-IDAYQREIARDETIQPLVRQVMRIHVRDEARHIAFAREELRRVWP 229 (304)
T ss_dssp HHHS-BHHHHHHHHT-SSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776 56666432211 13445555555566699999999998876543
No 55
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]
Probab=34.59 E-value=69 Score=28.23 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=46.9
Q ss_pred CCchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 048530 9 GSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVK 87 (280)
Q Consensus 9 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 87 (280)
.+-.++|+-=|++||--.+-|..+.. .. ...-|...++++.+|-.+|-.|+.+|+..|+
T Consensus 81 ~tv~E~L~~DL~~E~~a~~~lk~~i~-----~~---------------e~~~Dyvsrdl~~~iL~deEEHid~LetqL~ 139 (157)
T COG2193 81 ETVKEMLEADLALEYEARDALKEAIA-----YC---------------EEVQDYVSRDLLEEILADEEEHIDWLETQLD 139 (157)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH-----HH---------------HhcccchHHHHHHHHHcchHHHHHHHHHHHH
Confidence 34568999999999999999988852 11 0112567899999999999999999999876
No 56
>PF13628 DUF4142: Domain of unknown function (DUF4142)
Probab=31.07 E-value=3e+02 Score=22.55 Aligned_cols=106 Identities=18% Similarity=0.107 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHhhc--CCCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhH
Q 048530 61 DPFTNDVVLQFAWQEVGHLRAIKKTVK--GFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVPYVGL 138 (280)
Q Consensus 61 ~~~v~~~~~eia~~E~~HV~~L~~aLg--av~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGv 138 (280)
++.|+++++.+..+...--.-|+.... ++.-|.-.++. .-...++.--+ .-++.|| ..||-.--.--.=-+
T Consensus 30 ~~~Vk~~A~~~~~dh~~~~~~l~~la~~~~v~lp~~~~~~-~~~~~l~~L~~-~~g~~FD-----~~yl~~~i~~h~~~l 102 (139)
T PF13628_consen 30 SPEVKAFAQQMVEDHTQANQQLAALAAKKGVTLPPTALSA-EQQAELDRLQK-LSGSAFD-----RAYLDAQIKAHEKAL 102 (139)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccH-hhHHHHHHHHc-CchhHHH-----HHHHHHHHHHHHHHH
Confidence 688999999998877766666665544 45444212221 11222222211 1112453 446555433333456
Q ss_pred Hhhcc-ccccCCChhHHHHHHHHHHhhhhhHHHHHH
Q 048530 139 TGYVG-ANPKLQGAVSKRLVAGLLGVESGQDAVIRA 173 (280)
Q Consensus 139 tAY~G-aap~l~~~~~l~aAa~Il~VEA~Haa~IR~ 173 (280)
..|.. .++.-.|+.+++.|...+.+--.|-...|.
T Consensus 103 ~~~~~~~~~~~~~~~lk~~a~~~lp~l~~hl~~a~~ 138 (139)
T PF13628_consen 103 ALFEKQLAASGKDPELKAFAQETLPVLEAHLEMARA 138 (139)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHhHHHHHHHHHHhh
Confidence 77787 788888999999999888888888766654
No 57
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=31.05 E-value=82 Score=27.02 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHhhc--CCCCccccCCc-chHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchh
Q 048530 61 DPFTNDVVLQFAWQEVGHLRAIKKTVK--GFPRPLLDLSA-GSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVPYVG 137 (280)
Q Consensus 61 ~~~v~~~~~eia~~E~~HV~~L~~aLg--av~~P~id~s~-~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VG 137 (280)
+|.+++.+++-..+...|+.-|++.+. +.......|.. ..+-.-+++..+.. .=||-.-+...+.+++.+|...
T Consensus 33 ~~~L~~~l~~h~~eT~~q~~rLe~~~~~lg~~p~~~~c~~~~gl~~e~~~~~~~~---~~d~~~~D~~li~a~q~~ehye 109 (159)
T PF05974_consen 33 SPELKAALEEHLEETEQQIERLEQIFEALGADPSAEKCDAMEGLVAEAQELIEEF---AEDPAVKDAALIAAAQKVEHYE 109 (159)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-CHH-HHHHHHHHHHHHHHHT----S-SHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccCcchHHHHHHHHHHHHHhcc---cCCchHhhHHHHHHHHHHHHHH
Confidence 488999999999999999999999877 22111122210 12222222222220 1234444566777899999999
Q ss_pred HHhhcccc---ccCCChhHHHHHHHHHHhhhhhHHHHHHHHH
Q 048530 138 LTGYVGAN---PKLQGAVSKRLVAGLLGVESGQDAVIRALLY 176 (280)
Q Consensus 138 vtAY~Gaa---p~l~~~~~l~aAa~Il~VEA~Haa~IR~lL~ 176 (280)
..+|.... ..+..++..++.-..|.=|-..+.+++.++-
T Consensus 110 IA~Y~tL~~~A~~lG~~e~a~lL~~~L~EE~~~~~~L~~~a~ 151 (159)
T PF05974_consen 110 IAAYGTLIALAKQLGDEEAAQLLEQNLDEEEAADEKLTQLAE 151 (159)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997543 3455566666666666666666666655443
No 58
>PRK13456 DNA protection protein DPS; Provisional
Probab=29.61 E-value=1.8e+02 Score=26.36 Aligned_cols=56 Identities=23% Similarity=0.203 Sum_probs=47.3
Q ss_pred hhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhcC
Q 048530 12 VDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVKG 88 (280)
Q Consensus 12 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLga 88 (280)
.++|+=.|.-|.-.-+-|..-.. . + ...||.+++++.+|-.+|..|-+-|++.|++
T Consensus 109 ~~mL~~~L~AEr~AI~~Y~eii~-----~-----~-----------~~kDp~T~~l~~~IL~dE~eH~~dl~~lL~~ 164 (186)
T PRK13456 109 KEILKVLLEAERCAIRTYTEICD-----M-----T-----------AGKDPRTYDLALAILQEEIEHEAWFSELLGG 164 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----H-----H-----------hcCCccHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999988752 1 1 1347899999999999999999999999983
No 59
>PF01786 AOX: Alternative oxidase; InterPro: IPR002680 The alternative oxidase is used as a second terminal oxidase in the mitochondria, electrons are transferred directly from reduced ubiquinol to oxygen forming water []. This is not coupled to ATP synthesis and is not inhibited by cyanide, this pathway is a single step process []. In Oryza sativa (Rice) the transcript levels of the alternative oxidase are increased by low temperature []. It has been predicted to contain a coupled diiron centre on the basis of a conserved sequence motif consisting of the proposed iron ligands, four Glu and two His residues []. The EPR study of Arabidopsis thaliana (Mouse-ear cress) alternative oxidase AOX1a shows that the enzyme contains a hydroxo-bridged mixed-valent Fe(II)/Fe(III) binuclear iron centre []. A catalytic cycle has been proposed that involves diiron centre and at least one transient protein-derived radical, most probably an invariant Tyr residue [].; GO: 0007585 respiratory gaseous exchange, 0055114 oxidation-reduction process, 0005740 mitochondrial envelope
Probab=29.27 E-value=89 Score=28.57 Aligned_cols=56 Identities=23% Similarity=0.208 Sum_probs=35.1
Q ss_pred HHHHHHHH---HHhhhhCCCccccCCcccCCCCC-CccccccCCC---HHHHHHHHHHHHhHHHHHHH
Q 048530 21 LEYLEAEF---FLFGSLGYGLDRVAPNLTLGGPA-PIGAKKANLD---PFTNDVVLQFAWQEVGHLRA 81 (280)
Q Consensus 21 LEyLEa~F---Y~~a~~G~gl~~~~~~l~~gGp~-p~g~~~a~l~---~~v~~~~~eia~~E~~HV~~ 81 (280)
.+|||.+= |++-+ .+.+.+-...-|+ ++.-+.-+++ ..+++++..|+.||..|+..
T Consensus 139 vgylEeeAv~tYt~~l-----~di~~g~l~~~paP~iAi~Yw~l~~~~atlrDvi~~IRaDEa~Hr~v 201 (207)
T PF01786_consen 139 VGYLEEEAVHTYTEFL-----EDIDEGKLPNMPAPEIAIDYWGLPELDATLRDVILAIRADEAEHRDV 201 (207)
T ss_pred HHHHHHHHHHHHHHHH-----HHcccCCCCCCCCCHHHHHHhCCCccCchHHHHHHHHHhhHHHHHHh
Confidence 47888775 55554 3333331223343 3444444444 48999999999999999864
No 60
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=29.24 E-value=4.3e+02 Score=23.84 Aligned_cols=110 Identities=21% Similarity=0.252 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhc--CCCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHH
Q 048530 62 PFTNDVVLQFAWQEVGHLRAIKKTVK--GFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVPYVGLT 139 (280)
Q Consensus 62 ~~v~~~~~eia~~E~~HV~~L~~aLg--av~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvt 139 (280)
+..-+-+..++..|..|.+-.-+-+. +++ .-..++....+-+.+..- +-.|..= .+-|+.+.++|-=+-=
T Consensus 48 ~~Lv~~m~~LarEEL~HFeqV~~im~~Rgi~--l~~~~~~~Ya~~L~k~vR-----~~~p~~l-lD~Llv~alIEARScE 119 (180)
T cd07910 48 PELVEAMSDLAREELQHFEQVLKIMKKRGIP--LGPDSKDPYASGLRKLVR-----KGEPERL-LDRLLVAALIEARSCE 119 (180)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCCCCCCHHHHHHHHHcc-----cCChHHH-HHHHHHHHHHHHHhHH
Confidence 55667788899999999887776665 443 222233334444443332 1122222 2344444455654444
Q ss_pred hhccccccCCChhHHHHHHHHHHhhhhhHHHHHHHHHhhh
Q 048530 140 GYVGANPKLQGAVSKRLVAGLLGVESGQDAVIRALLYEKA 179 (280)
Q Consensus 140 AY~Gaap~l~~~~~l~aAa~Il~VEA~Haa~IR~lL~~~~ 179 (280)
=+.=.+|.+.+++..+-=.+++..||||-..-=.+-.+..
T Consensus 120 RF~lLa~~l~D~eL~~FY~~Ll~SEarHy~~yl~LA~~y~ 159 (180)
T cd07910 120 RFALLAPALPDPELKKFYRGLLESEARHYELFLDLARKYF 159 (180)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4444568999999999999999999999987666666544
No 61
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=27.72 E-value=86 Score=26.35 Aligned_cols=58 Identities=16% Similarity=0.104 Sum_probs=45.4
Q ss_pred CchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 048530 10 SDVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVK 87 (280)
Q Consensus 10 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 87 (280)
+-.++|..+|..|---.+.|..... . + ..--|..+.++++.|..+|..|+.+|++.|+
T Consensus 82 ~~~e~l~~~l~~E~~~~~~~~e~i~-----~-----A----------~~~~D~~t~~ll~~~i~eee~h~~~l~~~l~ 139 (157)
T TIGR00754 82 TVREMLEADLALELDVLNRLKEAIA-----Y-----A----------EEVRDYVSRDLLEEILEDEEEHIDWLETQLE 139 (157)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH-----H-----H----------HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888888888888888751 0 0 0112688999999999999999999999887
No 62
>PF11553 DUF3231: Protein of unknown function (DUF3231); InterPro: IPR021617 This bacterial family of proteins has no known function. ; PDB: 2RBD_B.
Probab=27.03 E-value=3.9e+02 Score=22.63 Aligned_cols=86 Identities=16% Similarity=0.136 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHhhc--CCCCcc----ccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhcc
Q 048530 61 DPFTNDVVLQFAWQEVGHLRAIKKTVK--GFPRPL----LDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVP 134 (280)
Q Consensus 61 ~~~v~~~~~eia~~E~~HV~~L~~aLg--av~~P~----id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E 134 (280)
|+.++.++++....-..|++.|++.+. ++|-|. -|.... + --||+ |...+.--+.+-
T Consensus 45 D~dik~~l~~~~~~~~~~i~~l~~ll~~e~ip~P~~~~~~~v~~~--------~--------~~lfs-D~~~l~~~~~~~ 107 (166)
T PF11553_consen 45 DKDIKKLLKKGLDLSQKQIEQLEKLLKEEGIPVPPGFPESDVTDS--------A--------PPLFS-DKFMLFYISFMS 107 (166)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------------GG--------G--------S-G---HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCC--------C--------CCCCC-cHHHHHHHHHHH
Confidence 789999999999999999999999998 666553 122110 0 11233 444455555556
Q ss_pred chhHHhhccccccCCChhHHHHHHHHHHh
Q 048530 135 YVGLTGYVGANPKLQGAVSKRLVAGLLGV 163 (280)
Q Consensus 135 ~VGvtAY~Gaap~l~~~~~l~aAa~Il~V 163 (280)
-.|+..|..+......++++..--..+.-
T Consensus 108 ~~~~~~~~~al~~s~R~Dl~~~f~~~~~~ 136 (166)
T PF11553_consen 108 QAGITNYGRALSSSVRNDLRAFFMKFLME 136 (166)
T ss_dssp HHHHHHHHHHHHH--SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 78999999888877777776655554444
No 63
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=26.80 E-value=43 Score=33.41 Aligned_cols=63 Identities=19% Similarity=0.209 Sum_probs=50.4
Q ss_pred CCCCCCChHHHHHHHhhc-c---chhHHhhccccccCCC---hhHHHHHHHHHHhhhhhHHHHHHHHHhhh
Q 048530 116 PFDPYANSINYLIASYLV-P---YVGLTGYVGANPKLQG---AVSKRLVAGLLGVESGQDAVIRALLYEKA 179 (280)
Q Consensus 116 ~FdPy~n~~~FL~~A~~~-E---~VGvtAY~Gaap~l~~---~~~l~aAa~Il~VEA~Haa~IR~lL~~~~ 179 (280)
.-|||.++.-|+-+|..- . .|+||| ...+|+..+ +..++-.+.++-.|-+|.--+|.+++-..
T Consensus 126 DiDPFGSPaPFlDaA~~s~~~~G~l~vTA-TD~a~L~G~~p~~c~rkY~a~~~~~~~~hE~glR~Lig~va 195 (380)
T COG1867 126 DIDPFGSPAPFLDAALRSVRRGGLLCVTA-TDTAPLCGSYPRKCRRKYGAVPLKTEFCHEVGLRILIGYVA 195 (380)
T ss_pred ecCCCCCCchHHHHHHHHhhcCCEEEEEe-cccccccCCChHHHHHHhccccCCCcchhHHHHHHHHHHHH
Confidence 358999999999887543 3 467776 456677776 66789999999999999999999998643
No 64
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=25.54 E-value=2.7e+02 Score=22.53 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=46.1
Q ss_pred CCchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhh
Q 048530 9 GSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTV 86 (280)
Q Consensus 9 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aL 86 (280)
.+..++|.-++..|..-.+.|..... . + .. -|..+++++.+|-.+|..|+.-++..|
T Consensus 92 ~~~~~~l~~~~~~e~~~i~~~~~~~~-----~-----a----------~~-~D~~t~~ll~~~l~de~~h~~~~~~~~ 148 (148)
T cd01052 92 PDVKGILKVNLKAERCAIKVYKELCD-----M-----T----------HG-KDPVTYDLALAILNEEIEHEEDLEELL 148 (148)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH-----H-----H----------cC-CChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45678999999999999999998862 0 0 01 378899999999999999999988654
No 65
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=22.63 E-value=3.4e+02 Score=26.66 Aligned_cols=99 Identities=19% Similarity=0.215 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHhhcC-CC-CccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhH
Q 048530 61 DPFTNDVVLQFAWQEVGHLRAIKKTVKG-FP-RPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVPYVGL 138 (280)
Q Consensus 61 ~~~v~~~~~eia~~E~~HV~~L~~aLga-v~-~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGv 138 (280)
+|...+++..||.||.-|-.|-++.+++ +. -|.--+ .+|..+|..- +..| |.
T Consensus 183 DpvL~~il~~IA~DE~rH~~fy~~iv~~~l~~dPd~t~--~Ai~~vm~~~----------------------f~MP--g~ 236 (330)
T PF03405_consen 183 DPVLAQILGRIAADEARHEAFYRNIVEAYLELDPDGTM--LAIADVMRNK----------------------FRMP--GH 236 (330)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHH--HHHHHHHHH--------------------------T--TT
T ss_pred ChHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCcHHHH--HHHHHHHHHh----------------------ccCc--ch
Confidence 7899999999999999999999988871 11 010000 1333333321 1111 11
Q ss_pred Hhhccccc-cCCChhHHHHHHHHHHhhhhhHHHHHHHHHhhhhcccCCC
Q 048530 139 TGYVGANP-KLQGAVSKRLVAGLLGVESGQDAVIRALLYEKANEKVYPY 186 (280)
Q Consensus 139 tAY~Gaap-~l~~~~~l~aAa~Il~VEA~Haa~IR~lL~~~~~~~v~Py 186 (280)
....|..+ +........+-+||-+..-+++ ++..++...+.+.+...
T Consensus 237 ~m~dg~d~~lF~~~~a~~a~~GvY~~~dy~d-I~~~l~~~W~i~~~~gL 284 (330)
T PF03405_consen 237 LMPDGRDPDLFERFSAVAARAGVYTPRDYAD-ILEPLLRRWKIESRTGL 284 (330)
T ss_dssp T---SS-TTHHHHHHHHHHHTTSS-HHHHHH-HHHHHHHHTTGGG--S-
T ss_pred hcccCcchHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHhccCcccCC
Confidence 22223333 2234445566667888887877 99999998887766643
No 66
>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.
Probab=21.46 E-value=1.1e+02 Score=29.47 Aligned_cols=118 Identities=17% Similarity=0.146 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhc----CCCCccc---cCCcchHHH---------HHH--------HhcCCCCCC-CCC
Q 048530 64 TNDVVLQFAWQEVGHLRAIKKTVK----GFPRPLL---DLSAGSFAK---------VID--------KAFGKPLNP-PFD 118 (280)
Q Consensus 64 v~~~~~eia~~E~~HV~~L~~aLg----av~~P~i---d~s~~~F~~---------~~~--------~A~g~~l~p-~Fd 118 (280)
.++++..|+..|.+||+.|-..+. +.+.... ..+...+.. .+. .+.|.+.+- ..+
T Consensus 55 ~kdlL~dIatEEl~H~Emvat~I~~Ll~g~~~~~~~~~~~~~p~~~~~~~~~n~~h~i~~g~g~~p~ds~G~PWt~~yv~ 134 (283)
T PF05067_consen 55 YKDLLMDIATEELGHVEMVATMIAQLLKGAPPEEQEEAAPGDPLLAAIMGGGNPQHYIVHGGGAYPVDSNGVPWTAAYVQ 134 (283)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSSHHHHHGGGTTTGGGGCSS-SHHHHTSSSS--SB-TTS-B-BGGG--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhhhcccchHHHHhhcCCCchhhhcCCCCCCccCCCCCcccchhhh
Confidence 479999999999999999988765 3332211 110000000 000 011211000 011
Q ss_pred CCCChHHHHHHHhhccchhHHhhccccccCCChhHHHHHHHHHHhhhhhHHHHHHHHHhhhhc
Q 048530 119 PYANSINYLIASYLVPYVGLTGYVGANPKLQGAVSKRLVAGLLGVESGQDAVIRALLYEKANE 181 (280)
Q Consensus 119 Py~n~~~FL~~A~~~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~VEA~Haa~IR~lL~~~~~~ 181 (280)
--.|...=|..=...|--+-.-|.=...+..|+.+++...=++.=|-.|.-.....|.+....
T Consensus 135 ~sGdl~aDL~~NiaAE~~AR~~yerL~~mTdDpgvkd~L~FLl~Re~vH~~~f~~ALe~l~~~ 197 (283)
T PF05067_consen 135 ASGDLIADLRSNIAAEQRARLQYERLYEMTDDPGVKDMLSFLLAREIVHQQQFGKALEELQEN 197 (283)
T ss_dssp --S-HHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 122344445556667888889999999999999999999999999999998888777764443
No 67
>COG3546 Mn-containing catalase [Inorganic ion transport and metabolism]
Probab=20.14 E-value=7.9e+02 Score=23.68 Aligned_cols=115 Identities=17% Similarity=0.134 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhc-----CCC-----CccccCCc--c--hHHHHHHHhcCCCCCCCCC----CCC--
Q 048530 62 PFTNDVVLQFAWQEVGHLRAIKKTVK-----GFP-----RPLLDLSA--G--SFAKVIDKAFGKPLNPPFD----PYA-- 121 (280)
Q Consensus 62 ~~v~~~~~eia~~E~~HV~~L~~aLg-----av~-----~P~id~s~--~--~F~~~~~~A~g~~l~p~Fd----Py~-- 121 (280)
...++++..|+-.|.+|+..+-+.+. +.. .|.+.-.- . .+.. +.+... +|+| |++
T Consensus 52 ~~~~dll~DI~TEEl~HlEmvat~I~~L~~ga~~e~~~~~~l~~s~~~~~n~~h~~----~~~~g~-~p~dS~G~pWta~ 126 (277)
T COG3546 52 AKYKDLLMDIGTEELSHLEMVATMINLLNKGATGEGAEEAELYGSGLGGMNPHHIS----VLLYGA-GPADSAGVPWTAA 126 (277)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhHHhhccCCCchhhh----hhccCC-CCcccCCCccchh
Confidence 56899999999999999999998876 222 23322110 0 1111 111110 1122 111
Q ss_pred ------ChHHHHHHHhhccchhHHhhccccccCCChhHHHHHHHHHHhhhhhHHHHHHHHHhhhhc
Q 048530 122 ------NSINYLIASYLVPYVGLTGYVGANPKLQGAVSKRLVAGLLGVESGQDAVIRALLYEKANE 181 (280)
Q Consensus 122 ------n~~~FL~~A~~~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~VEA~Haa~IR~lL~~~~~~ 181 (280)
|...=|..=...|--+-.-|.=..-+..||.++....=++.=|..|.-..+..|..-...
T Consensus 127 YI~~sGnliaDlr~NiaaE~~aR~~y~rLy~mtdDpgvrd~L~fLl~Re~~H~~~f~kAL~~l~~~ 192 (277)
T COG3546 127 YIVASGNLIADLRSNIAAEARARLQYERLYEMTDDPGVRDTLSFLLTREIAHQNAFRKALESLENE 192 (277)
T ss_pred hhhccCccHHHHHHHHHHHhccceeeeeeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111112223334555566677777788899999999999999999999988888875544
Done!