Query 048533
Match_columns 591
No_of_seqs 629 out of 3826
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 10:22:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048533.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048533hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 6.9E-67 1.5E-71 548.3 66.3 510 53-584 382-918 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.9E-65 4.2E-70 537.4 63.9 486 57-566 353-865 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 1.4E-63 3E-68 534.7 55.4 502 42-567 122-644 (857)
4 PLN03077 Protein ECB2; Provisi 100.0 4.6E-62 1E-66 522.9 57.5 505 43-566 154-675 (857)
5 PLN03081 pentatricopeptide (PP 100.0 2.6E-60 5.6E-65 497.4 50.0 472 77-578 86-560 (697)
6 PLN03081 pentatricopeptide (PP 100.0 2.6E-58 5.6E-63 482.4 51.9 469 43-547 90-562 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 9.6E-33 2.1E-37 304.1 65.1 513 38-566 360-889 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4.8E-31 1.1E-35 290.5 68.0 528 41-584 329-875 (899)
9 PRK11447 cellulose synthase su 100.0 1E-24 2.3E-29 240.2 64.2 541 13-567 31-730 (1157)
10 PRK11447 cellulose synthase su 100.0 2.2E-23 4.9E-28 229.7 66.4 523 38-574 25-699 (1157)
11 KOG4626 O-linked N-acetylgluco 100.0 8.9E-25 1.9E-29 204.0 39.5 440 54-529 61-506 (966)
12 KOG4626 O-linked N-acetylgluco 100.0 1.7E-24 3.7E-29 202.1 38.8 442 81-558 51-500 (966)
13 PRK09782 bacteriophage N4 rece 99.9 1.1E-20 2.4E-25 198.9 57.9 497 54-574 57-705 (987)
14 KOG2002 TPR-containing nuclear 99.9 5.3E-21 1.2E-25 188.3 47.0 505 54-567 177-735 (1018)
15 PRK09782 bacteriophage N4 rece 99.9 1.4E-19 3.1E-24 190.7 58.9 197 372-577 476-674 (987)
16 TIGR00990 3a0801s09 mitochondr 99.9 1.3E-19 2.8E-24 187.9 51.2 254 284-542 308-571 (615)
17 PRK11788 tetratricopeptide rep 99.9 1.2E-21 2.6E-26 193.2 33.9 302 52-374 46-354 (389)
18 PRK15174 Vi polysaccharide exp 99.9 1.1E-19 2.4E-24 187.5 47.3 334 167-507 44-381 (656)
19 KOG2002 TPR-containing nuclear 99.9 1.2E-19 2.5E-24 179.0 43.9 473 55-553 250-756 (1018)
20 TIGR00990 3a0801s09 mitochondr 99.9 7.8E-19 1.7E-23 182.1 52.5 402 81-507 130-571 (615)
21 PRK11788 tetratricopeptide rep 99.9 7.8E-21 1.7E-25 187.3 35.1 302 136-443 41-353 (389)
22 PRK15174 Vi polysaccharide exp 99.9 3.2E-19 6.8E-24 184.2 46.9 322 53-402 54-381 (656)
23 PRK14574 hmsH outer membrane p 99.9 1.1E-17 2.4E-22 172.9 55.7 440 78-543 34-514 (822)
24 PRK10049 pgaA outer membrane p 99.9 7.1E-18 1.5E-22 178.1 52.7 406 129-543 14-457 (765)
25 PRK14574 hmsH outer membrane p 99.9 1.6E-17 3.4E-22 171.8 53.7 434 52-515 45-519 (822)
26 PRK10049 pgaA outer membrane p 99.9 1.1E-18 2.3E-23 184.2 46.3 407 53-520 27-467 (765)
27 KOG0495 HAT repeat protein [RN 99.8 3.2E-15 7E-20 141.6 49.7 481 55-574 390-879 (913)
28 KOG4422 Uncharacterized conser 99.8 1.1E-15 2.4E-20 137.6 42.1 455 82-566 120-614 (625)
29 KOG2076 RNA polymerase III tra 99.8 2.4E-14 5.1E-19 141.2 48.2 487 54-563 152-720 (895)
30 KOG2003 TPR repeat-containing 99.8 4.4E-16 9.6E-21 141.1 32.9 458 47-527 207-708 (840)
31 KOG1915 Cell cycle control pro 99.8 1.6E-14 3.4E-19 131.9 42.5 429 137-590 80-537 (677)
32 KOG2003 TPR repeat-containing 99.8 5.6E-16 1.2E-20 140.5 30.8 425 129-563 200-709 (840)
33 KOG0495 HAT repeat protein [RN 99.8 2.6E-13 5.7E-18 128.9 48.4 473 37-543 406-881 (913)
34 KOG2076 RNA polymerase III tra 99.8 5.7E-14 1.2E-18 138.5 44.5 487 41-552 173-777 (895)
35 KOG4422 Uncharacterized conser 99.8 6.3E-14 1.4E-18 126.5 40.6 456 55-536 129-619 (625)
36 KOG1915 Cell cycle control pro 99.8 8.8E-13 1.9E-17 120.7 45.0 457 54-542 86-585 (677)
37 COG2956 Predicted N-acetylgluc 99.7 2.1E-14 4.6E-19 124.9 31.3 306 37-366 34-346 (389)
38 KOG1155 Anaphase-promoting com 99.7 2.3E-12 5E-17 117.9 39.4 163 375-541 332-494 (559)
39 PRK10747 putative protoheme IX 99.7 1.5E-12 3.2E-17 127.1 37.0 285 143-436 97-389 (398)
40 PRK10747 putative protoheme IX 99.7 1.6E-12 3.4E-17 126.9 37.0 284 248-541 97-389 (398)
41 TIGR00540 hemY_coli hemY prote 99.7 2.1E-12 4.5E-17 126.8 37.8 289 142-435 96-397 (409)
42 TIGR00540 hemY_coli hemY prote 99.7 9.1E-13 2E-17 129.3 35.3 294 85-399 91-396 (409)
43 KOG0547 Translocase of outer m 99.7 6.6E-12 1.4E-16 115.7 37.2 431 83-559 120-578 (606)
44 KOG0547 Translocase of outer m 99.6 2.7E-12 5.8E-17 118.2 33.6 417 46-506 120-565 (606)
45 KOG1155 Anaphase-promoting com 99.6 8.5E-12 1.8E-16 114.2 36.1 377 133-526 167-553 (559)
46 KOG1126 DNA-binding cell divis 99.6 3.8E-14 8.3E-19 135.4 21.6 290 56-372 334-625 (638)
47 PF13429 TPR_15: Tetratricopep 99.6 2.7E-15 5.9E-20 139.8 12.0 260 135-400 13-275 (280)
48 COG2956 Predicted N-acetylgluc 99.6 4.3E-12 9.3E-17 110.8 29.8 291 140-436 45-346 (389)
49 PF13429 TPR_15: Tetratricopep 99.6 6.1E-15 1.3E-19 137.5 13.3 260 275-541 13-276 (280)
50 KOG1156 N-terminal acetyltrans 99.6 2E-10 4.4E-15 109.8 42.9 464 40-541 7-510 (700)
51 KOG1126 DNA-binding cell divis 99.6 5.9E-13 1.3E-17 127.4 25.8 287 250-547 334-625 (638)
52 COG3071 HemY Uncharacterized e 99.6 1.6E-11 3.4E-16 110.8 32.9 286 143-437 97-390 (400)
53 COG3071 HemY Uncharacterized e 99.6 1.9E-11 4.2E-16 110.2 33.4 285 248-542 97-390 (400)
54 KOG2047 mRNA splicing factor [ 99.6 4.2E-09 9.1E-14 100.8 50.3 256 284-542 361-651 (835)
55 KOG1156 N-terminal acetyltrans 99.6 9.9E-10 2.1E-14 105.2 43.8 427 88-544 17-470 (700)
56 KOG1173 Anaphase-promoting com 99.6 3.1E-11 6.8E-16 113.4 33.1 468 38-523 47-532 (611)
57 KOG1173 Anaphase-promoting com 99.6 2.3E-10 4.9E-15 107.8 37.5 468 55-558 30-532 (611)
58 PRK12370 invasion protein regu 99.5 8.4E-12 1.8E-16 127.3 30.0 216 55-297 275-500 (553)
59 KOG2047 mRNA splicing factor [ 99.5 3E-08 6.5E-13 95.1 47.9 408 131-549 103-585 (835)
60 PF12569 NARP1: NMDA receptor- 99.5 2.7E-09 5.9E-14 105.1 41.8 299 79-402 5-334 (517)
61 KOG3785 Uncharacterized conser 99.5 2.8E-10 6E-15 100.8 29.9 438 55-517 36-498 (557)
62 KOG3785 Uncharacterized conser 99.5 1.7E-09 3.6E-14 96.0 33.7 451 88-585 32-526 (557)
63 KOG1174 Anaphase-promoting com 99.5 3.4E-08 7.4E-13 89.7 42.1 406 126-551 93-508 (564)
64 KOG4318 Bicoid mRNA stability 99.5 9.5E-11 2.1E-15 115.7 28.1 253 152-423 12-286 (1088)
65 TIGR02521 type_IV_pilW type IV 99.4 7.3E-11 1.6E-15 107.4 24.8 198 78-296 31-229 (234)
66 PRK12370 invasion protein regu 99.4 1.6E-10 3.5E-15 118.0 29.1 250 92-367 275-535 (553)
67 KOG1129 TPR repeat-containing 99.4 1.1E-11 2.4E-16 108.3 16.8 233 78-332 221-458 (478)
68 KOG2376 Signal recognition par 99.4 2E-08 4.3E-13 95.5 39.1 448 49-540 20-518 (652)
69 KOG4162 Predicted calmodulin-b 99.4 2.7E-08 5.9E-13 97.6 40.9 406 128-542 321-783 (799)
70 KOG1129 TPR repeat-containing 99.4 5.4E-11 1.2E-15 104.1 19.6 227 309-541 229-457 (478)
71 PF12569 NARP1: NMDA receptor- 99.4 2.4E-09 5.2E-14 105.5 32.9 292 207-506 11-333 (517)
72 TIGR02521 type_IV_pilW type IV 99.4 7.6E-10 1.6E-14 100.7 27.6 200 338-541 31-231 (234)
73 KOG4318 Bicoid mRNA stability 99.3 6.2E-10 1.3E-14 110.1 25.3 274 186-493 11-286 (1088)
74 COG3063 PilF Tfp pilus assembl 99.3 6.3E-10 1.4E-14 93.1 21.7 195 47-264 41-236 (250)
75 KOG2376 Signal recognition par 99.3 1.7E-07 3.8E-12 89.3 39.9 406 136-562 18-506 (652)
76 KOG4162 Predicted calmodulin-b 99.3 1.3E-08 2.8E-13 99.8 33.2 406 77-507 322-783 (799)
77 KOG0548 Molecular co-chaperone 99.3 3.4E-08 7.4E-13 93.0 34.5 434 50-524 11-471 (539)
78 KOG1174 Anaphase-promoting com 99.3 3.6E-07 7.7E-12 83.3 37.8 268 199-474 231-502 (564)
79 COG3063 PilF Tfp pilus assembl 99.3 5.5E-09 1.2E-13 87.6 23.6 206 131-341 36-243 (250)
80 PRK11189 lipoprotein NlpI; Pro 99.3 5.1E-09 1.1E-13 97.8 26.0 221 55-301 40-267 (296)
81 KOG1840 Kinesin light chain [C 99.3 7E-09 1.5E-13 100.9 27.0 195 241-435 247-477 (508)
82 PRK11189 lipoprotein NlpI; Pro 99.2 6.8E-09 1.5E-13 97.0 25.1 221 90-333 38-266 (296)
83 PF13041 PPR_2: PPR repeat fam 99.2 4.5E-11 9.7E-16 77.7 6.7 50 511-560 1-50 (50)
84 cd05804 StaR_like StaR_like; a 99.2 1.6E-07 3.5E-12 91.4 34.2 202 77-298 5-214 (355)
85 cd05804 StaR_like StaR_like; a 99.2 1.1E-07 2.4E-12 92.6 32.8 306 41-366 6-335 (355)
86 KOG0624 dsRNA-activated protei 99.2 1.3E-07 2.8E-12 84.0 28.3 310 48-402 45-370 (504)
87 KOG1840 Kinesin light chain [C 99.2 1.3E-08 2.7E-13 99.2 24.0 237 235-471 199-478 (508)
88 KOG0624 dsRNA-activated protei 99.2 9.3E-07 2E-11 78.7 33.1 330 77-473 37-371 (504)
89 PF13041 PPR_2: PPR repeat fam 99.2 1E-10 2.2E-15 76.0 6.5 49 301-349 1-49 (50)
90 KOG1127 TPR repeat-containing 99.1 4.7E-07 1E-11 91.5 34.1 457 55-541 472-995 (1238)
91 PLN02789 farnesyltranstransfer 99.1 6.1E-08 1.3E-12 90.3 26.2 215 43-282 39-267 (320)
92 KOG0985 Vesicle coat protein c 99.1 7.5E-06 1.6E-10 83.1 41.6 403 113-572 967-1378(1666)
93 KOG1125 TPR repeat-containing 99.1 7.9E-09 1.7E-13 98.1 19.0 224 54-328 298-523 (579)
94 KOG4340 Uncharacterized conser 99.1 3.5E-07 7.5E-12 79.7 27.0 393 134-542 14-443 (459)
95 KOG1127 TPR repeat-containing 99.1 4E-07 8.6E-12 92.0 30.2 366 43-433 494-909 (1238)
96 KOG0548 Molecular co-chaperone 99.1 1.4E-06 3.1E-11 82.5 32.1 408 85-543 9-456 (539)
97 KOG3617 WD40 and TPR repeat-co 99.1 1.7E-06 3.6E-11 85.7 33.3 216 78-329 858-1106(1416)
98 KOG4340 Uncharacterized conser 99.0 3.1E-07 6.7E-12 80.0 23.0 357 3-399 4-372 (459)
99 PF04733 Coatomer_E: Coatomer 99.0 4.3E-08 9.4E-13 90.1 18.9 250 140-402 11-265 (290)
100 KOG0985 Vesicle coat protein c 99.0 3.5E-05 7.7E-10 78.4 40.0 384 78-533 984-1374(1666)
101 KOG3616 Selective LIM binding 99.0 9.2E-07 2E-11 86.4 28.2 375 83-507 620-1024(1636)
102 KOG3617 WD40 and TPR repeat-co 99.0 1.5E-05 3.2E-10 79.4 36.5 171 83-297 805-994 (1416)
103 PRK04841 transcriptional regul 99.0 7.7E-06 1.7E-10 90.4 39.2 335 209-543 383-761 (903)
104 KOG1125 TPR repeat-containing 99.0 1.4E-07 3.1E-12 89.8 21.6 252 139-396 294-565 (579)
105 KOG1914 mRNA cleavage and poly 99.0 4.7E-05 1E-09 72.4 42.8 427 68-542 13-501 (656)
106 KOG2053 Mitochondrial inherita 98.9 8.2E-05 1.8E-09 75.2 49.0 225 55-303 23-259 (932)
107 KOG1914 mRNA cleavage and poly 98.9 4.9E-05 1.1E-09 72.3 38.3 175 389-566 309-490 (656)
108 PRK04841 transcriptional regul 98.9 8E-06 1.7E-10 90.3 36.6 375 130-507 341-760 (903)
109 KOG3616 Selective LIM binding 98.9 8.1E-06 1.8E-10 80.1 31.1 166 313-503 742-907 (1636)
110 PF04733 Coatomer_E: Coatomer 98.9 1E-07 2.3E-12 87.6 17.7 146 350-506 114-264 (290)
111 PLN02789 farnesyltranstransfer 98.9 1.6E-06 3.5E-11 80.9 25.4 206 88-315 47-267 (320)
112 TIGR03302 OM_YfiO outer membra 98.9 6.6E-07 1.4E-11 81.2 20.9 107 73-194 28-144 (235)
113 TIGR03302 OM_YfiO outer membra 98.8 2.4E-07 5.2E-12 84.1 17.8 185 46-264 38-232 (235)
114 PRK14720 transcript cleavage f 98.8 2.4E-06 5.1E-11 88.8 26.5 259 15-314 7-268 (906)
115 PRK15179 Vi polysaccharide bio 98.8 6.3E-07 1.4E-11 92.2 21.4 179 43-242 51-229 (694)
116 KOG1070 rRNA processing protei 98.8 8.5E-06 1.8E-10 85.6 27.5 233 269-505 1457-1698(1710)
117 PRK10370 formate-dependent nit 98.8 4.1E-07 8.9E-12 79.0 15.5 121 55-197 53-176 (198)
118 KOG1128 Uncharacterized conser 98.7 8.5E-06 1.8E-10 80.2 25.0 216 272-506 400-615 (777)
119 KOG1070 rRNA processing protei 98.7 1.6E-05 3.6E-10 83.6 27.7 226 303-532 1458-1690(1710)
120 KOG1128 Uncharacterized conser 98.7 1.4E-06 3.1E-11 85.4 19.1 215 307-542 402-616 (777)
121 COG5010 TadD Flp pilus assembl 98.7 5.4E-06 1.2E-10 71.6 20.0 164 127-295 64-227 (257)
122 PRK15359 type III secretion sy 98.7 7.8E-07 1.7E-11 73.0 13.6 117 61-203 13-129 (144)
123 COG5010 TadD Flp pilus assembl 98.7 4.2E-06 9.2E-11 72.2 18.1 179 60-263 52-230 (257)
124 PRK10370 formate-dependent nit 98.6 4.5E-06 9.7E-11 72.5 16.9 119 143-264 52-173 (198)
125 PRK14720 transcript cleavage f 98.6 4.2E-05 9E-10 79.9 26.2 222 76-349 29-268 (906)
126 PRK15179 Vi polysaccharide bio 98.6 1.6E-05 3.5E-10 82.0 22.8 149 124-276 80-228 (694)
127 KOG3081 Vesicle coat complex C 98.6 0.00011 2.4E-09 63.6 23.8 85 314-402 148-236 (299)
128 PRK15359 type III secretion sy 98.6 1.4E-06 3E-11 71.5 12.1 105 47-173 30-134 (144)
129 TIGR02552 LcrH_SycD type III s 98.6 2.5E-06 5.4E-11 69.7 13.7 111 63-195 5-115 (135)
130 KOG3081 Vesicle coat complex C 98.5 0.00013 2.7E-09 63.3 22.9 30 477-506 206-235 (299)
131 PF12854 PPR_1: PPR repeat 98.5 1.7E-07 3.7E-12 54.3 3.9 32 508-539 2-33 (34)
132 PF12854 PPR_1: PPR repeat 98.5 2.6E-07 5.6E-12 53.6 4.5 32 265-296 2-33 (34)
133 COG4783 Putative Zn-dependent 98.4 2.2E-05 4.9E-10 73.9 18.1 150 77-264 305-454 (484)
134 KOG3060 Uncharacterized conser 98.4 0.00034 7.3E-09 60.3 23.1 164 306-473 55-221 (289)
135 KOG2053 Mitochondrial inherita 98.4 0.0036 7.9E-08 63.8 44.6 233 9-266 8-257 (932)
136 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 2.1E-05 4.5E-10 75.0 17.3 122 83-227 174-295 (395)
137 COG4783 Putative Zn-dependent 98.4 0.00012 2.5E-09 69.3 21.6 148 138-306 314-462 (484)
138 TIGR02552 LcrH_SycD type III s 98.4 4.2E-06 9.1E-11 68.4 11.0 108 33-161 9-116 (135)
139 KOG3060 Uncharacterized conser 98.3 0.001 2.3E-08 57.4 23.8 189 55-264 26-220 (289)
140 PF09976 TPR_21: Tetratricopep 98.3 1.3E-05 2.8E-10 66.1 11.7 121 54-191 24-144 (145)
141 TIGR02795 tol_pal_ybgF tol-pal 98.3 1.8E-05 3.9E-10 62.9 12.1 94 53-161 14-107 (119)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 4.4E-05 9.5E-10 72.8 15.5 126 133-264 172-297 (395)
143 TIGR02795 tol_pal_ybgF tol-pal 98.1 8.3E-05 1.8E-09 59.1 13.1 104 79-197 3-108 (119)
144 COG5107 RNA14 Pre-mRNA 3'-end 98.1 0.008 1.7E-07 56.5 35.8 131 409-542 398-531 (660)
145 PF09976 TPR_21: Tetratricopep 98.1 0.00016 3.5E-09 59.5 14.9 115 213-328 24-143 (145)
146 PRK10866 outer membrane biogen 98.1 0.00071 1.5E-08 60.9 19.9 83 77-174 31-113 (243)
147 PF12895 Apc3: Anaphase-promot 98.1 6.3E-06 1.4E-10 60.5 4.6 82 54-155 2-83 (84)
148 PLN03088 SGT1, suppressor of 98.0 8.2E-05 1.8E-09 71.4 12.8 89 53-162 14-102 (356)
149 KOG0553 TPR repeat-containing 98.0 6.3E-05 1.4E-09 66.5 10.2 87 53-160 93-179 (304)
150 PRK15363 pathogenicity island 98.0 0.00012 2.6E-09 59.1 10.7 99 77-194 34-132 (157)
151 KOG0550 Molecular chaperone (D 98.0 0.0017 3.7E-08 60.1 19.3 58 46-106 54-111 (486)
152 cd00189 TPR Tetratricopeptide 97.9 0.0001 2.2E-09 55.6 9.8 94 81-193 3-96 (100)
153 KOG2041 WD40 repeat protein [G 97.9 0.021 4.5E-07 56.8 26.6 221 57-326 679-901 (1189)
154 PRK10803 tol-pal system protei 97.9 0.0002 4.4E-09 64.8 12.7 92 54-160 156-247 (263)
155 PRK10866 outer membrane biogen 97.9 0.0013 2.8E-08 59.2 17.8 59 53-111 44-102 (243)
156 PRK02603 photosystem I assembl 97.9 0.00053 1.2E-08 58.5 14.2 93 77-185 34-126 (172)
157 PRK15363 pathogenicity island 97.9 0.00056 1.2E-08 55.2 13.1 97 131-229 36-132 (157)
158 COG4235 Cytochrome c biogenesi 97.9 0.00063 1.4E-08 60.8 14.6 118 57-196 138-258 (287)
159 PF13525 YfiO: Outer membrane 97.9 0.00095 2.1E-08 58.5 15.9 71 77-162 4-74 (203)
160 TIGR00756 PPR pentatricopeptid 97.9 3E-05 6.5E-10 45.7 4.6 33 237-269 2-34 (35)
161 TIGR00756 PPR pentatricopeptid 97.9 2.8E-05 6.1E-10 45.8 4.3 33 515-547 2-34 (35)
162 PF07079 DUF1347: Protein of u 97.9 0.027 5.9E-07 53.2 43.8 446 52-541 17-523 (549)
163 PF14938 SNAP: Soluble NSF att 97.9 0.0039 8.5E-08 58.0 20.5 125 206-330 120-264 (282)
164 cd00189 TPR Tetratricopeptide 97.8 0.00028 6.1E-09 53.1 10.9 95 133-229 3-97 (100)
165 PF10037 MRP-S27: Mitochondria 97.8 0.00034 7.3E-09 67.2 13.1 124 368-491 61-186 (429)
166 PLN03088 SGT1, suppressor of 97.8 0.00046 1E-08 66.3 14.3 96 83-197 7-102 (356)
167 CHL00033 ycf3 photosystem I as 97.8 0.00035 7.5E-09 59.4 11.9 103 57-176 15-117 (168)
168 PF13812 PPR_3: Pentatricopept 97.8 4.1E-05 8.8E-10 44.8 4.4 32 515-546 3-34 (34)
169 PF12688 TPR_5: Tetratrico pep 97.8 0.00052 1.1E-08 53.4 11.6 109 49-176 9-117 (120)
170 PF13812 PPR_3: Pentatricopept 97.8 4.3E-05 9.2E-10 44.7 4.3 33 236-268 2-34 (34)
171 KOG0550 Molecular chaperone (D 97.8 0.017 3.6E-07 53.9 22.3 258 138-402 57-350 (486)
172 PRK02603 photosystem I assembl 97.8 0.00059 1.3E-08 58.2 12.7 94 40-151 34-127 (172)
173 PF10037 MRP-S27: Mitochondria 97.8 0.00036 7.9E-09 67.0 12.3 122 162-283 63-186 (429)
174 PF12895 Apc3: Anaphase-promot 97.8 6.8E-05 1.5E-09 55.0 5.9 80 456-538 2-83 (84)
175 KOG2041 WD40 repeat protein [G 97.8 0.055 1.2E-06 54.0 28.8 227 135-401 710-951 (1189)
176 PF14938 SNAP: Soluble NSF att 97.8 0.0015 3.3E-08 60.7 16.1 153 145-297 89-264 (282)
177 PF13432 TPR_16: Tetratricopep 97.8 5.7E-05 1.2E-09 52.2 5.0 59 48-109 4-62 (65)
178 KOG0553 TPR repeat-containing 97.7 0.0018 4E-08 57.6 14.9 89 86-193 89-177 (304)
179 PF06239 ECSIT: Evolutionarily 97.7 0.00078 1.7E-08 57.1 12.0 96 477-572 46-162 (228)
180 PF13525 YfiO: Outer membrane 97.7 0.0035 7.6E-08 54.9 16.9 59 53-111 17-75 (203)
181 CHL00033 ycf3 photosystem I as 97.7 0.0006 1.3E-08 57.9 11.3 68 42-109 36-103 (168)
182 PF05843 Suf: Suppressor of fo 97.7 0.0011 2.4E-08 61.3 13.7 131 374-507 2-136 (280)
183 KOG2796 Uncharacterized conser 97.6 0.033 7.2E-07 48.7 20.6 251 75-344 65-325 (366)
184 PF08579 RPM2: Mitochondrial r 97.6 0.0014 3E-08 49.0 10.6 76 308-383 30-114 (120)
185 PF13432 TPR_16: Tetratricopep 97.6 0.00018 3.9E-09 49.7 5.9 59 84-160 3-61 (65)
186 PF14559 TPR_19: Tetratricopep 97.6 0.00016 3.5E-09 50.5 5.5 53 54-109 4-56 (68)
187 PF05843 Suf: Suppressor of fo 97.6 0.0013 2.7E-08 60.9 12.7 130 132-264 3-136 (280)
188 PF12688 TPR_5: Tetratrico pep 97.6 0.0056 1.2E-07 47.7 14.0 105 449-559 7-117 (120)
189 PF13414 TPR_11: TPR repeat; P 97.6 0.00028 6.2E-09 49.4 6.3 64 78-159 3-67 (69)
190 COG4700 Uncharacterized protei 97.6 0.0098 2.1E-07 48.9 15.5 147 56-225 71-218 (251)
191 COG1729 Uncharacterized protei 97.6 0.0018 4E-08 57.2 12.4 90 55-159 155-244 (262)
192 PF08579 RPM2: Mitochondrial r 97.5 0.0023 5E-08 47.9 10.8 77 343-419 30-115 (120)
193 PF13414 TPR_11: TPR repeat; P 97.5 0.00024 5.2E-09 49.8 5.6 63 43-108 5-68 (69)
194 PRK10153 DNA-binding transcrip 97.5 0.0079 1.7E-07 60.6 18.1 65 477-543 419-483 (517)
195 COG4105 ComL DNA uptake lipopr 97.5 0.042 9E-07 48.4 19.7 195 77-303 33-237 (254)
196 KOG2114 Vacuolar assembly/sort 97.5 0.16 3.4E-06 52.1 27.2 180 82-297 338-517 (933)
197 KOG2796 Uncharacterized conser 97.5 0.049 1.1E-06 47.7 19.5 161 140-308 159-324 (366)
198 PF01535 PPR: PPR repeat; Int 97.5 0.00014 3E-09 41.3 3.1 29 515-543 2-30 (31)
199 PRK10153 DNA-binding transcrip 97.5 0.0076 1.7E-07 60.7 17.1 63 270-332 420-482 (517)
200 PF14559 TPR_19: Tetratricopep 97.5 0.00048 1E-08 48.1 6.3 54 89-160 2-55 (68)
201 KOG1130 Predicted G-alpha GTPa 97.4 0.0018 3.8E-08 59.9 11.2 133 304-436 196-343 (639)
202 PF01535 PPR: PPR repeat; Int 97.4 0.00022 4.8E-09 40.5 3.7 29 305-333 2-30 (31)
203 KOG1130 Predicted G-alpha GTPa 97.4 0.0033 7.1E-08 58.2 12.8 133 374-506 196-343 (639)
204 PRK10803 tol-pal system protei 97.4 0.0044 9.6E-08 56.2 13.4 104 79-197 143-249 (263)
205 KOG2280 Vacuolar assembly/sort 97.4 0.2 4.4E-06 50.7 30.2 108 410-536 686-793 (829)
206 COG4700 Uncharacterized protei 97.4 0.059 1.3E-06 44.5 18.9 135 405-541 86-221 (251)
207 PF06239 ECSIT: Evolutionarily 97.3 0.0078 1.7E-07 51.2 12.4 113 291-422 35-152 (228)
208 PF13371 TPR_9: Tetratricopept 97.3 0.00087 1.9E-08 47.5 6.0 59 48-109 2-60 (73)
209 COG4235 Cytochrome c biogenesi 97.2 0.014 3E-07 52.5 14.1 99 164-264 155-256 (287)
210 COG1729 Uncharacterized protei 97.2 0.0095 2.1E-07 52.8 12.5 102 81-197 144-247 (262)
211 PF13512 TPR_18: Tetratricopep 97.1 0.023 4.9E-07 45.3 12.9 59 53-111 22-80 (142)
212 PF04840 Vps16_C: Vps16, C-ter 97.1 0.27 5.8E-06 46.2 26.3 104 377-500 181-284 (319)
213 KOG1538 Uncharacterized conser 97.1 0.065 1.4E-06 53.0 17.9 38 256-296 621-658 (1081)
214 PRK15331 chaperone protein Sic 97.0 0.026 5.7E-07 46.0 12.8 122 11-159 10-134 (165)
215 KOG0543 FKBP-type peptidyl-pro 97.0 0.025 5.3E-07 52.9 13.8 137 83-228 213-354 (397)
216 PF07079 DUF1347: Protein of u 97.0 0.36 7.7E-06 46.1 39.5 129 41-176 46-178 (549)
217 PF03704 BTAD: Bacterial trans 97.0 0.042 9.2E-07 45.3 14.1 72 480-552 64-140 (146)
218 PF10345 Cohesin_load: Cohesin 96.9 0.66 1.4E-05 48.6 36.0 193 56-262 36-252 (608)
219 PRK15331 chaperone protein Sic 96.9 0.043 9.3E-07 44.8 13.1 90 451-542 45-134 (165)
220 COG3898 Uncharacterized membra 96.9 0.37 8E-06 45.0 29.1 321 44-403 59-393 (531)
221 PF13512 TPR_18: Tetratricopep 96.9 0.023 5.1E-07 45.2 11.0 87 77-178 9-95 (142)
222 PF08631 SPO22: Meiosis protei 96.8 0.4 8.7E-06 44.5 26.3 169 89-269 4-191 (278)
223 PF03704 BTAD: Bacterial trans 96.8 0.047 1E-06 45.0 13.4 71 132-203 64-139 (146)
224 PF13371 TPR_9: Tetratricopept 96.8 0.005 1.1E-07 43.5 6.6 58 138-196 3-60 (73)
225 PF13424 TPR_12: Tetratricopep 96.8 0.0046 1E-07 44.4 6.3 71 77-158 4-74 (78)
226 COG4105 ComL DNA uptake lipopr 96.8 0.36 7.7E-06 42.7 22.1 76 36-113 31-106 (254)
227 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.034 7.5E-07 53.3 12.6 66 76-159 73-141 (453)
228 PF04184 ST7: ST7 protein; In 96.7 0.21 4.6E-06 48.3 17.4 58 44-107 172-229 (539)
229 COG3898 Uncharacterized membra 96.6 0.59 1.3E-05 43.7 32.6 145 388-542 244-392 (531)
230 PF13281 DUF4071: Domain of un 96.6 0.61 1.3E-05 44.4 20.1 77 342-418 145-227 (374)
231 KOG4555 TPR repeat-containing 96.6 0.078 1.7E-06 40.9 11.4 93 52-161 54-146 (175)
232 PF13424 TPR_12: Tetratricopep 96.6 0.011 2.5E-07 42.4 6.9 63 479-541 6-74 (78)
233 KOG1585 Protein required for f 96.6 0.19 4.2E-06 43.6 14.8 21 138-158 99-119 (308)
234 KOG0543 FKBP-type peptidyl-pro 96.5 0.023 5E-07 53.1 10.2 131 44-193 211-354 (397)
235 PF13431 TPR_17: Tetratricopep 96.5 0.0026 5.6E-08 36.7 2.6 32 64-98 2-33 (34)
236 PF13281 DUF4071: Domain of un 96.5 0.7 1.5E-05 44.0 19.7 100 129-228 140-254 (374)
237 PRK11906 transcriptional regul 96.3 0.26 5.6E-06 47.7 15.7 147 56-225 273-432 (458)
238 COG5107 RNA14 Pre-mRNA 3'-end 96.3 1.1 2.4E-05 42.8 36.2 117 444-564 398-518 (660)
239 PF12921 ATP13: Mitochondrial 96.2 0.091 2E-06 41.5 10.5 94 443-556 2-96 (126)
240 COG3118 Thioredoxin domain-con 96.2 0.9 2E-05 41.1 17.3 149 81-249 137-286 (304)
241 PF13428 TPR_14: Tetratricopep 96.1 0.019 4E-07 35.6 5.2 41 131-172 2-42 (44)
242 PF08631 SPO22: Meiosis protei 96.1 1.2 2.5E-05 41.4 24.0 172 53-235 5-192 (278)
243 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.19 4.1E-06 48.5 13.7 67 127-194 72-141 (453)
244 COG3118 Thioredoxin domain-con 96.1 0.39 8.5E-06 43.3 14.7 121 140-263 144-264 (304)
245 PF04840 Vps16_C: Vps16, C-ter 96.0 1.4 2.9E-05 41.6 28.1 21 81-101 3-23 (319)
246 KOG2396 HAT (Half-A-TPR) repea 96.0 1.8 3.8E-05 42.2 38.3 428 58-542 88-559 (568)
247 PF12921 ATP13: Mitochondrial 95.9 0.19 4.1E-06 39.7 11.0 80 409-488 3-98 (126)
248 KOG2114 Vacuolar assembly/sort 95.9 2.7 5.9E-05 43.7 27.7 179 132-330 336-517 (933)
249 KOG3941 Intermediate in Toll s 95.8 0.13 2.7E-06 45.7 10.3 43 530-572 140-182 (406)
250 PF04053 Coatomer_WDAD: Coatom 95.8 0.3 6.6E-06 48.2 14.2 167 38-260 261-427 (443)
251 KOG1258 mRNA processing protei 95.7 2.6 5.7E-05 42.1 36.2 118 144-264 59-180 (577)
252 KOG1941 Acetylcholine receptor 95.7 0.4 8.8E-06 44.3 13.3 231 54-297 19-273 (518)
253 PF10300 DUF3808: Protein of u 95.7 1.1 2.3E-05 45.1 17.9 118 421-541 246-375 (468)
254 COG4649 Uncharacterized protei 95.6 1.1 2.3E-05 37.0 15.0 125 55-194 72-196 (221)
255 KOG4555 TPR repeat-containing 95.6 0.34 7.3E-06 37.6 10.6 94 451-545 51-147 (175)
256 KOG1585 Protein required for f 95.5 1.6 3.4E-05 38.3 18.1 36 71-106 24-59 (308)
257 PF09205 DUF1955: Domain of un 95.5 0.92 2E-05 35.4 12.6 68 477-545 85-152 (161)
258 KOG2610 Uncharacterized conser 95.5 0.37 8E-06 44.0 12.2 153 141-295 114-272 (491)
259 PF10300 DUF3808: Protein of u 95.5 1.3 2.8E-05 44.5 17.7 40 61-106 177-216 (468)
260 KOG1941 Acetylcholine receptor 95.4 2.1 4.6E-05 39.8 17.0 46 246-291 17-64 (518)
261 PF04053 Coatomer_WDAD: Coatom 95.1 0.68 1.5E-05 45.8 14.3 131 339-502 296-426 (443)
262 PRK11906 transcriptional regul 95.1 0.64 1.4E-05 45.1 13.4 114 55-190 318-432 (458)
263 KOG1258 mRNA processing protei 95.1 4.2 9.1E-05 40.7 35.2 393 56-492 60-489 (577)
264 smart00299 CLH Clathrin heavy 95.1 1.5 3.3E-05 35.6 15.0 40 415-455 14-53 (140)
265 COG4785 NlpI Lipoprotein NlpI, 95.0 2 4.3E-05 36.9 16.5 186 48-264 72-266 (297)
266 PF13428 TPR_14: Tetratricopep 95.0 0.051 1.1E-06 33.6 4.1 37 46-85 6-42 (44)
267 COG3629 DnrI DNA-binding trans 94.9 0.3 6.5E-06 44.3 10.2 78 131-209 154-236 (280)
268 KOG3941 Intermediate in Toll s 94.8 0.28 6.1E-06 43.6 9.4 100 290-389 54-174 (406)
269 COG0457 NrfG FOG: TPR repeat [ 94.7 2.9 6.3E-05 37.3 27.7 124 417-542 139-265 (291)
270 smart00299 CLH Clathrin heavy 94.7 1.9 4.1E-05 35.0 15.5 40 136-176 13-52 (140)
271 KOG1538 Uncharacterized conser 94.6 2.5 5.5E-05 42.4 16.0 61 234-303 746-806 (1081)
272 PRK11619 lytic murein transgly 94.5 7.5 0.00016 40.8 39.7 264 71-366 92-374 (644)
273 COG2976 Uncharacterized protei 94.4 2.7 5.9E-05 35.6 13.9 96 83-195 94-189 (207)
274 KOG4234 TPR repeat-containing 94.3 0.51 1.1E-05 39.7 9.2 97 85-195 102-198 (271)
275 PF04184 ST7: ST7 protein; In 94.3 5.9 0.00013 38.9 17.4 54 416-469 267-321 (539)
276 COG4649 Uncharacterized protei 93.9 3.2 7E-05 34.3 14.6 126 87-228 67-195 (221)
277 COG3629 DnrI DNA-binding trans 93.7 1.1 2.3E-05 40.8 11.0 77 480-557 155-236 (280)
278 PF09205 DUF1955: Domain of un 93.7 2.8 6E-05 32.9 14.1 138 247-404 14-151 (161)
279 PF10345 Cohesin_load: Cohesin 93.6 11 0.00024 39.7 42.7 216 58-297 8-252 (608)
280 KOG2610 Uncharacterized conser 93.6 2.4 5.2E-05 39.0 12.7 152 315-470 115-274 (491)
281 PF13170 DUF4003: Protein of u 93.5 6.4 0.00014 36.7 19.5 125 253-379 80-223 (297)
282 COG4785 NlpI Lipoprotein NlpI, 93.4 4.7 0.0001 34.8 16.5 179 143-332 78-266 (297)
283 PF13176 TPR_7: Tetratricopept 93.3 0.16 3.5E-06 29.7 3.5 27 80-106 1-27 (36)
284 PRK15180 Vi polysaccharide bio 93.2 9 0.00019 37.3 32.3 162 13-197 258-423 (831)
285 PF10602 RPN7: 26S proteasome 93.1 1.1 2.4E-05 38.1 9.8 64 131-194 37-102 (177)
286 KOG1586 Protein required for f 93.1 5.6 0.00012 34.8 18.6 25 243-267 162-186 (288)
287 COG0457 NrfG FOG: TPR repeat [ 93.0 6.2 0.00013 35.0 30.5 222 284-507 37-265 (291)
288 KOG2422 Uncharacterized conser 92.9 8 0.00017 38.6 16.0 165 25-191 223-404 (665)
289 PF13176 TPR_7: Tetratricopept 92.9 0.25 5.5E-06 28.8 4.0 27 515-541 1-27 (36)
290 PF07575 Nucleopor_Nup85: Nup8 92.7 14 0.00031 38.5 19.4 27 79-105 149-175 (566)
291 PF09613 HrpB1_HrpK: Bacterial 92.5 5.1 0.00011 32.9 12.5 52 419-472 21-73 (160)
292 PF09613 HrpB1_HrpK: Bacterial 92.5 5.1 0.00011 32.9 13.4 58 84-159 16-73 (160)
293 COG3947 Response regulator con 92.5 5.7 0.00012 35.9 13.3 61 202-263 281-341 (361)
294 cd00923 Cyt_c_Oxidase_Va Cytoc 92.5 1 2.3E-05 32.9 7.3 62 494-556 23-84 (103)
295 PF02259 FAT: FAT domain; Int 92.5 11 0.00023 36.5 26.0 65 372-436 145-212 (352)
296 PF04910 Tcf25: Transcriptiona 92.4 11 0.00024 36.4 18.1 132 55-193 24-167 (360)
297 KOG1920 IkappaB kinase complex 92.3 21 0.00045 39.3 26.3 133 380-540 915-1053(1265)
298 KOG2280 Vacuolar assembly/sort 92.2 16 0.00035 37.9 32.8 107 443-568 684-790 (829)
299 PF13174 TPR_6: Tetratricopept 92.0 0.2 4.3E-06 28.4 2.8 30 80-109 2-31 (33)
300 PF07719 TPR_2: Tetratricopept 91.9 0.39 8.4E-06 27.4 4.0 31 79-109 2-32 (34)
301 KOG1464 COP9 signalosome, subu 91.9 8.9 0.00019 34.3 19.2 193 53-293 39-254 (440)
302 PF00515 TPR_1: Tetratricopept 91.9 0.43 9.3E-06 27.3 4.1 31 79-109 2-32 (34)
303 KOG1464 COP9 signalosome, subu 91.9 9 0.0002 34.2 17.4 186 248-434 40-257 (440)
304 PF08424 NRDE-2: NRDE-2, neces 91.8 7.6 0.00016 36.9 14.7 27 240-266 159-185 (321)
305 PF13431 TPR_17: Tetratricopep 91.7 0.27 5.8E-06 28.3 3.0 29 155-184 4-32 (34)
306 KOG1920 IkappaB kinase complex 91.6 25 0.00054 38.7 26.8 23 134-156 681-703 (1265)
307 PF02284 COX5A: Cytochrome c o 91.5 1.1 2.5E-05 33.1 6.6 60 496-556 28-87 (108)
308 COG1747 Uncharacterized N-term 91.5 15 0.00034 36.2 23.5 179 127-312 63-248 (711)
309 PF02259 FAT: FAT domain; Int 91.5 14 0.0003 35.7 23.1 65 407-471 145-212 (352)
310 PF10602 RPN7: 26S proteasome 91.4 3.8 8.3E-05 34.8 11.0 61 375-435 38-100 (177)
311 KOG4648 Uncharacterized conser 91.2 0.77 1.7E-05 42.1 6.8 56 48-106 104-159 (536)
312 KOG0276 Vesicle coat complex C 90.7 3.9 8.5E-05 40.9 11.4 26 200-225 666-691 (794)
313 PF00515 TPR_1: Tetratricopept 90.7 0.46 1E-05 27.1 3.5 29 132-160 3-31 (34)
314 PF07575 Nucleopor_Nup85: Nup8 90.2 19 0.00041 37.6 16.9 59 97-156 116-174 (566)
315 KOG1550 Extracellular protein 90.1 26 0.00055 36.4 24.7 179 94-297 228-424 (552)
316 PF07719 TPR_2: Tetratricopept 89.9 0.59 1.3E-05 26.6 3.5 29 132-160 3-31 (34)
317 KOG4234 TPR repeat-containing 89.9 8.3 0.00018 32.8 11.1 90 140-230 105-198 (271)
318 PF06552 TOM20_plant: Plant sp 89.6 4.7 0.0001 33.7 9.5 117 57-195 7-137 (186)
319 KOG0890 Protein kinase of the 89.4 56 0.0012 39.2 26.4 322 83-437 1388-1731(2382)
320 PF07035 Mic1: Colon cancer-as 88.9 13 0.00027 31.1 15.5 134 186-331 15-148 (167)
321 COG2909 MalT ATP-dependent tra 88.4 38 0.00083 36.1 22.9 195 348-542 425-647 (894)
322 PF07035 Mic1: Colon cancer-as 88.4 14 0.00029 30.9 15.0 31 396-426 17-47 (167)
323 PRK15180 Vi polysaccharide bio 88.3 5.6 0.00012 38.6 10.3 125 380-508 296-421 (831)
324 PF14561 TPR_20: Tetratricopep 88.2 7 0.00015 28.7 8.8 45 61-108 8-52 (90)
325 PF13374 TPR_10: Tetratricopep 88.1 1 2.2E-05 27.1 3.8 29 78-106 2-30 (42)
326 KOG2396 HAT (Half-A-TPR) repea 87.6 31 0.00067 34.1 36.7 238 321-572 300-557 (568)
327 KOG0686 COP9 signalosome, subu 87.5 28 0.0006 33.4 18.6 64 131-194 151-216 (466)
328 KOG2471 TPR repeat-containing 87.3 14 0.00031 36.2 12.2 39 486-525 343-381 (696)
329 PF13174 TPR_6: Tetratricopept 87.3 0.77 1.7E-05 25.8 2.8 29 132-160 2-30 (33)
330 PF13374 TPR_10: Tetratricopep 87.2 1.6 3.4E-05 26.2 4.3 28 514-541 3-30 (42)
331 cd00923 Cyt_c_Oxidase_Va Cytoc 87.2 6.4 0.00014 29.0 7.6 46 461-506 25-70 (103)
332 KOG4648 Uncharacterized conser 87.1 2.2 4.7E-05 39.3 6.6 56 85-158 104-159 (536)
333 TIGR02561 HrpB1_HrpK type III 86.9 15 0.00033 29.8 12.2 56 140-196 20-75 (153)
334 PF02284 COX5A: Cytochrome c o 86.8 11 0.00024 28.1 9.2 47 461-507 28-74 (108)
335 KOG2471 TPR repeat-containing 86.7 22 0.00047 35.0 13.1 39 450-489 342-380 (696)
336 PF13170 DUF4003: Protein of u 86.6 28 0.00061 32.6 22.4 47 321-367 80-132 (297)
337 KOG0890 Protein kinase of the 86.6 83 0.0018 38.0 26.1 318 135-472 1388-1731(2382)
338 PF11207 DUF2989: Protein of u 86.5 13 0.00027 32.0 10.4 72 460-532 123-197 (203)
339 KOG4507 Uncharacterized conser 86.4 7.6 0.00016 38.8 10.2 104 50-174 616-719 (886)
340 PF13181 TPR_8: Tetratricopept 85.4 1.5 3.3E-05 24.9 3.3 29 79-107 2-30 (34)
341 PF07721 TPR_4: Tetratricopept 85.1 1 2.2E-05 23.9 2.3 23 80-102 3-25 (26)
342 PF07721 TPR_4: Tetratricopept 85.0 1.4 3E-05 23.4 2.8 23 132-154 3-25 (26)
343 TIGR03504 FimV_Cterm FimV C-te 84.5 2.6 5.6E-05 25.9 4.1 26 136-161 5-30 (44)
344 PF06552 TOM20_plant: Plant sp 84.2 7 0.00015 32.8 7.7 111 424-543 7-137 (186)
345 KOG2063 Vacuolar assembly/sort 84.2 48 0.0011 35.9 15.6 37 176-212 602-638 (877)
346 PF13181 TPR_8: Tetratricopept 84.1 3.1 6.7E-05 23.5 4.3 29 514-542 2-30 (34)
347 TIGR02561 HrpB1_HrpK type III 84.0 21 0.00046 28.9 12.4 59 85-161 17-75 (153)
348 KOG4642 Chaperone-dependent E3 83.5 23 0.0005 31.3 10.7 83 53-157 22-105 (284)
349 KOG4570 Uncharacterized conser 83.4 23 0.00049 32.7 11.0 95 305-401 66-163 (418)
350 PF11207 DUF2989: Protein of u 83.4 15 0.00032 31.6 9.4 71 391-462 124-197 (203)
351 KOG2063 Vacuolar assembly/sort 82.7 78 0.0017 34.5 17.8 39 244-282 600-638 (877)
352 KOG4570 Uncharacterized conser 82.3 13 0.00028 34.2 9.1 49 458-506 115-163 (418)
353 PF13929 mRNA_stabil: mRNA sta 82.2 41 0.00088 30.9 16.0 134 145-278 143-286 (292)
354 KOG1308 Hsp70-interacting prot 82.0 1.2 2.7E-05 41.0 2.8 95 89-202 125-219 (377)
355 KOG1550 Extracellular protein 81.4 72 0.0016 33.2 27.1 147 181-333 228-394 (552)
356 KOG4077 Cytochrome c oxidase, 81.3 12 0.00027 29.1 7.4 46 497-542 68-113 (149)
357 PRK13184 pknD serine/threonine 81.1 95 0.0021 34.4 28.0 86 55-159 489-581 (932)
358 PF04190 DUF410: Protein of un 80.8 46 0.00099 30.5 15.9 25 199-223 89-113 (260)
359 TIGR03504 FimV_Cterm FimV C-te 80.7 4.2 9.1E-05 25.0 4.0 25 519-543 5-29 (44)
360 PRK09687 putative lyase; Provi 80.7 48 0.001 30.7 28.9 9 532-540 253-261 (280)
361 PF04910 Tcf25: Transcriptiona 80.2 59 0.0013 31.5 16.9 126 125-263 35-167 (360)
362 PF00637 Clathrin: Region in C 80.0 1.1 2.4E-05 36.6 1.7 51 138-188 15-65 (143)
363 KOG3364 Membrane protein invol 79.8 12 0.00027 29.6 7.1 69 77-161 31-102 (149)
364 KOG0530 Protein farnesyltransf 79.6 47 0.001 29.9 19.5 138 45-205 47-186 (318)
365 PF04097 Nic96: Nup93/Nic96; 79.2 90 0.0019 33.0 25.2 30 77-106 110-139 (613)
366 TIGR02508 type_III_yscG type I 78.9 21 0.00045 26.6 7.5 50 488-543 49-98 (115)
367 COG2976 Uncharacterized protei 78.7 41 0.00089 28.8 17.4 92 450-543 96-189 (207)
368 PRK11619 lytic murein transgly 78.4 97 0.0021 32.9 36.3 312 136-467 105-463 (644)
369 PF10579 Rapsyn_N: Rapsyn N-te 77.7 3.3 7.2E-05 29.1 3.2 57 43-101 10-66 (80)
370 PRK09687 putative lyase; Provi 77.6 61 0.0013 30.1 27.8 235 267-524 34-278 (280)
371 COG0819 TenA Putative transcri 76.8 33 0.00071 30.3 9.8 105 469-574 100-216 (218)
372 PF00637 Clathrin: Region in C 76.7 1.2 2.7E-05 36.3 1.1 86 170-262 12-97 (143)
373 KOG1586 Protein required for f 76.0 56 0.0012 28.9 20.5 18 455-472 166-183 (288)
374 COG1747 Uncharacterized N-term 75.9 90 0.0019 31.2 25.1 178 301-486 64-247 (711)
375 smart00028 TPR Tetratricopepti 75.9 4.1 8.8E-05 22.0 3.0 28 80-107 3-30 (34)
376 KOG4642 Chaperone-dependent E3 75.2 60 0.0013 28.9 14.2 116 418-537 20-141 (284)
377 KOG0376 Serine-threonine phosp 74.7 5.8 0.00013 38.7 5.1 99 54-175 17-115 (476)
378 KOG0276 Vesicle coat complex C 74.7 46 0.001 33.8 11.0 128 48-227 621-748 (794)
379 COG2909 MalT ATP-dependent tra 74.4 1.3E+02 0.0029 32.4 29.3 224 245-468 425-684 (894)
380 PF13929 mRNA_stabil: mRNA sta 74.2 73 0.0016 29.3 16.8 63 440-502 199-262 (292)
381 smart00028 TPR Tetratricopepti 73.8 6.4 0.00014 21.1 3.5 28 132-159 3-30 (34)
382 KOG4521 Nuclear pore complex, 73.7 1.6E+02 0.0034 33.0 16.5 170 81-257 923-1124(1480)
383 KOG4507 Uncharacterized conser 73.5 13 0.00029 37.2 7.2 118 440-559 604-721 (886)
384 PF09986 DUF2225: Uncharacteri 72.9 15 0.00033 32.3 7.0 56 57-112 141-199 (214)
385 PF10579 Rapsyn_N: Rapsyn N-te 72.8 5.6 0.00012 28.0 3.3 52 88-154 16-67 (80)
386 COG4455 ImpE Protein of avirul 72.6 32 0.00068 30.0 8.3 73 136-209 7-81 (273)
387 PF14853 Fis1_TPR_C: Fis1 C-te 72.3 12 0.00027 24.1 4.6 31 132-162 3-33 (53)
388 COG4455 ImpE Protein of avirul 71.4 35 0.00076 29.8 8.3 129 445-580 3-139 (273)
389 PF07163 Pex26: Pex26 protein; 71.1 58 0.0013 29.7 9.9 87 172-258 90-181 (309)
390 KOG2300 Uncharacterized conser 70.4 1.2E+02 0.0026 30.2 37.1 398 56-470 24-512 (629)
391 KOG1308 Hsp70-interacting prot 70.3 3.7 8E-05 38.1 2.6 98 140-239 124-221 (377)
392 KOG2062 26S proteasome regulat 70.0 1.5E+02 0.0033 31.3 29.0 20 453-472 511-530 (929)
393 PF07163 Pex26: Pex26 protein; 70.0 79 0.0017 28.9 10.5 86 310-395 90-180 (309)
394 KOG3807 Predicted membrane pro 68.8 60 0.0013 30.2 9.7 24 170-193 280-303 (556)
395 KOG4077 Cytochrome c oxidase, 68.8 40 0.00087 26.4 7.3 46 462-507 68-113 (149)
396 PF11848 DUF3368: Domain of un 68.2 25 0.00054 22.1 5.3 34 523-556 12-45 (48)
397 PF03745 DUF309: Domain of unk 67.3 35 0.00076 22.9 7.0 58 84-153 5-62 (62)
398 PHA02875 ankyrin repeat protei 66.4 1.4E+02 0.0031 29.6 15.9 210 142-373 11-230 (413)
399 KOG2422 Uncharacterized conser 66.2 1.6E+02 0.0035 30.1 17.2 132 89-226 249-404 (665)
400 KOG2066 Vacuolar assembly/sort 65.5 1.9E+02 0.0042 30.7 28.1 153 137-297 363-532 (846)
401 KOG2297 Predicted translation 65.3 1.2E+02 0.0025 28.2 15.2 218 331-578 159-386 (412)
402 COG3947 Response regulator con 64.9 1.2E+02 0.0025 28.1 17.5 71 480-551 281-356 (361)
403 PF12862 Apc5: Anaphase-promot 64.5 21 0.00046 26.5 5.3 53 54-106 11-69 (94)
404 PF04097 Nic96: Nup93/Nic96; 61.8 2.2E+02 0.0047 30.2 27.2 60 136-196 117-183 (613)
405 PF02847 MA3: MA3 domain; Int 61.7 53 0.0012 25.2 7.4 21 484-504 8-28 (113)
406 PF14561 TPR_20: Tetratricopep 61.7 62 0.0013 23.8 8.4 30 165-194 22-51 (90)
407 KOG0551 Hsp90 co-chaperone CNS 61.4 33 0.00071 32.0 6.7 94 84-192 87-180 (390)
408 KOG0545 Aryl-hydrocarbon recep 61.4 1.2E+02 0.0027 27.1 11.9 107 79-194 179-293 (329)
409 smart00544 MA3 Domain in DAP-5 60.5 73 0.0016 24.5 8.0 62 481-544 5-68 (113)
410 PF14689 SPOB_a: Sensor_kinase 59.7 30 0.00064 23.3 4.8 45 495-541 7-51 (62)
411 KOG2066 Vacuolar assembly/sort 59.5 2.5E+02 0.0053 30.0 25.9 73 207-285 363-438 (846)
412 KOG2908 26S proteasome regulat 59.4 1.6E+02 0.0035 27.8 11.6 20 487-506 124-143 (380)
413 KOG0686 COP9 signalosome, subu 58.9 1.8E+02 0.0039 28.3 15.9 94 202-297 152-256 (466)
414 KOG0376 Serine-threonine phosp 58.4 27 0.00059 34.3 6.0 108 84-212 10-117 (476)
415 PF09986 DUF2225: Uncharacteri 58.4 1.3E+02 0.0029 26.5 11.1 66 480-545 120-197 (214)
416 KOG0037 Ca2+-binding protein, 58.2 1.1E+02 0.0023 26.8 8.8 77 476-561 91-172 (221)
417 TIGR03362 VI_chp_7 type VI sec 58.0 1.7E+02 0.0036 27.6 15.2 176 40-229 99-279 (301)
418 smart00386 HAT HAT (Half-A-TPR 57.8 29 0.00063 18.8 4.2 29 55-86 1-29 (33)
419 PF11817 Foie-gras_1: Foie gra 57.5 85 0.0018 28.5 9.0 87 58-157 155-245 (247)
420 PF11846 DUF3366: Domain of un 56.3 59 0.0013 28.1 7.5 32 510-541 141-172 (193)
421 COG0735 Fur Fe2+/Zn2+ uptake r 55.8 70 0.0015 26.1 7.3 50 500-550 8-57 (145)
422 PF14853 Fis1_TPR_C: Fis1 C-te 55.7 32 0.00069 22.2 4.2 29 81-109 4-32 (53)
423 PF12862 Apc5: Anaphase-promot 55.7 81 0.0018 23.3 7.1 54 489-542 9-70 (94)
424 cd00280 TRFH Telomeric Repeat 55.4 84 0.0018 26.7 7.5 48 146-193 85-139 (200)
425 PF08311 Mad3_BUB1_I: Mad3/BUB 55.2 1E+02 0.0023 24.4 8.9 44 496-539 81-125 (126)
426 PF11846 DUF3366: Domain of un 54.3 67 0.0015 27.7 7.6 34 474-507 140-173 (193)
427 PF14689 SPOB_a: Sensor_kinase 53.9 26 0.00056 23.5 3.8 16 278-293 31-46 (62)
428 KOG2908 26S proteasome regulat 53.8 2E+02 0.0044 27.2 13.4 52 177-228 87-143 (380)
429 PRK10941 hypothetical protein; 53.7 1.8E+02 0.004 26.8 10.7 60 482-542 185-244 (269)
430 KOG2062 26S proteasome regulat 53.7 3E+02 0.0065 29.2 29.6 121 417-541 510-634 (929)
431 cd08819 CARD_MDA5_2 Caspase ac 53.5 85 0.0018 22.8 7.1 34 213-251 49-82 (88)
432 PF08424 NRDE-2: NRDE-2, neces 53.1 2.1E+02 0.0046 27.2 19.3 119 424-544 47-185 (321)
433 COG0790 FOG: TPR repeat, SEL1 52.6 2E+02 0.0043 26.8 24.6 46 460-508 172-221 (292)
434 KOG3364 Membrane protein invol 51.7 1.3E+02 0.0027 24.2 7.8 69 234-302 31-103 (149)
435 COG5159 RPN6 26S proteasome re 50.1 2.1E+02 0.0045 26.4 22.3 206 82-297 7-233 (421)
436 KOG4521 Nuclear pore complex, 50.1 4.3E+02 0.0093 29.9 14.7 123 238-360 986-1124(1480)
437 PF14669 Asp_Glu_race_2: Putat 49.9 1.7E+02 0.0036 25.2 14.5 55 483-537 137-205 (233)
438 PF13762 MNE1: Mitochondrial s 49.9 1.4E+02 0.0031 24.3 10.1 50 234-283 78-128 (145)
439 PF09670 Cas_Cas02710: CRISPR- 49.7 2.6E+02 0.0057 27.4 11.6 55 382-437 140-198 (379)
440 KOG0991 Replication factor C, 49.1 2E+02 0.0042 25.7 13.3 58 140-198 202-271 (333)
441 KOG4567 GTPase-activating prot 49.1 1.1E+02 0.0025 28.3 7.9 57 428-489 263-319 (370)
442 PF02847 MA3: MA3 domain; Int 48.8 88 0.0019 24.0 6.7 68 517-586 6-77 (113)
443 cd00280 TRFH Telomeric Repeat 48.4 1.7E+02 0.0037 24.9 9.0 73 94-179 85-157 (200)
444 PF11848 DUF3368: Domain of un 47.9 68 0.0015 20.1 5.2 32 489-520 13-44 (48)
445 KOG0545 Aryl-hydrocarbon recep 47.8 1.4E+02 0.003 26.8 8.0 92 52-161 189-295 (329)
446 cd08819 CARD_MDA5_2 Caspase ac 47.5 1.1E+02 0.0024 22.3 7.2 66 148-219 20-85 (88)
447 PF13762 MNE1: Mitochondrial s 46.9 1.6E+02 0.0034 24.0 10.8 78 273-350 42-127 (145)
448 PF00244 14-3-3: 14-3-3 protei 46.9 2.2E+02 0.0047 25.7 10.8 61 133-193 4-65 (236)
449 COG0790 FOG: TPR repeat, SEL1 46.0 2.5E+02 0.0054 26.1 25.3 84 388-474 128-222 (292)
450 PF00244 14-3-3: 14-3-3 protei 45.7 2.3E+02 0.005 25.5 10.2 56 309-364 7-63 (236)
451 KOG3824 Huntingtin interacting 45.5 40 0.00087 31.0 4.6 54 54-110 129-182 (472)
452 PRK10941 hypothetical protein; 45.3 2.5E+02 0.0054 25.9 11.4 58 448-506 186-243 (269)
453 PF10366 Vps39_1: Vacuolar sor 44.9 1.2E+02 0.0026 23.2 6.7 26 306-331 42-67 (108)
454 KOG2297 Predicted translation 44.7 2.7E+02 0.0058 26.0 20.1 152 321-498 185-341 (412)
455 PRK13342 recombination factor 44.5 3.3E+02 0.0072 27.1 18.9 74 91-164 187-264 (413)
456 KOG2034 Vacuolar sorting prote 44.0 4.6E+02 0.01 28.6 30.0 44 311-363 512-555 (911)
457 KOG0403 Neoplastic transformat 43.9 3.3E+02 0.0073 26.9 20.8 372 133-528 217-631 (645)
458 PF04190 DUF410: Protein of un 43.8 2.6E+02 0.0056 25.6 18.3 85 347-431 19-113 (260)
459 KOG0687 26S proteasome regulat 43.1 2.9E+02 0.0064 26.1 14.9 96 304-401 105-209 (393)
460 COG0735 Fur Fe2+/Zn2+ uptake r 42.5 1.6E+02 0.0034 24.1 7.4 61 153-214 9-69 (145)
461 PF04762 IKI3: IKI3 family; I 42.1 2.1E+02 0.0045 32.1 10.4 199 82-296 698-927 (928)
462 PF11817 Foie-gras_1: Foie gra 42.0 1.2E+02 0.0025 27.6 7.3 22 275-296 183-204 (247)
463 PF11663 Toxin_YhaV: Toxin wit 41.3 37 0.00081 27.0 3.3 32 523-556 105-136 (140)
464 PRK10564 maltose regulon perip 40.6 49 0.0011 30.6 4.5 29 169-197 261-289 (303)
465 PRK14700 recombination factor 40.0 3.2E+02 0.0069 25.6 14.2 101 77-179 66-175 (300)
466 KOG1839 Uncharacterized protei 39.4 3.3E+02 0.0072 31.1 11.0 122 176-297 943-1084(1236)
467 PF14669 Asp_Glu_race_2: Putat 39.2 2.5E+02 0.0055 24.2 14.2 54 379-432 138-205 (233)
468 PHA02875 ankyrin repeat protei 38.5 4E+02 0.0087 26.3 13.9 13 495-507 297-309 (413)
469 PF11663 Toxin_YhaV: Toxin wit 38.4 39 0.00083 26.9 3.0 34 140-175 105-138 (140)
470 PRK09857 putative transposase; 38.4 2.7E+02 0.0059 26.1 9.2 65 482-547 210-274 (292)
471 COG5187 RPN7 26S proteasome re 38.0 3.3E+02 0.0072 25.2 13.4 97 303-401 115-220 (412)
472 PRK10564 maltose regulon perip 38.0 65 0.0014 29.8 4.8 33 130-162 257-289 (303)
473 KOG0530 Protein farnesyltransf 37.9 3.2E+02 0.0069 25.0 19.7 128 143-274 56-185 (318)
474 COG5159 RPN6 26S proteasome re 37.6 3.3E+02 0.0073 25.1 20.4 94 343-436 130-234 (421)
475 COG5108 RPO41 Mitochondrial DN 36.5 5.3E+02 0.012 27.1 11.8 74 135-211 33-114 (1117)
476 KOG0292 Vesicle coat complex C 36.2 71 0.0015 34.2 5.3 128 170-328 625-752 (1202)
477 PF15297 CKAP2_C: Cytoskeleton 36.2 2.2E+02 0.0048 27.1 8.0 65 55-120 117-182 (353)
478 PF05944 Phage_term_smal: Phag 35.8 2.3E+02 0.005 22.7 8.0 27 448-474 53-79 (132)
479 PF09670 Cas_Cas02710: CRISPR- 35.7 4.4E+02 0.0094 25.9 11.4 15 421-435 254-268 (379)
480 PF09477 Type_III_YscG: Bacter 35.4 2E+02 0.0044 22.0 10.1 81 248-333 19-99 (116)
481 PF15297 CKAP2_C: Cytoskeleton 35.2 4.1E+02 0.0089 25.4 9.8 63 495-559 120-186 (353)
482 PF04090 RNA_pol_I_TF: RNA pol 34.8 2.7E+02 0.0059 24.2 7.8 28 445-472 43-70 (199)
483 PF10475 DUF2450: Protein of u 34.6 3.2E+02 0.0069 25.6 9.2 22 276-297 133-154 (291)
484 KOG3824 Huntingtin interacting 34.6 1E+02 0.0023 28.5 5.5 59 84-160 122-180 (472)
485 PF06957 COPI_C: Coatomer (COP 34.5 2.3E+02 0.005 28.0 8.2 25 83-107 209-233 (422)
486 COG4976 Predicted methyltransf 34.4 82 0.0018 27.9 4.6 56 52-110 6-61 (287)
487 PF10366 Vps39_1: Vacuolar sor 34.4 2.1E+02 0.0046 21.9 7.9 27 132-158 41-67 (108)
488 KOG0128 RNA-binding protein SA 34.1 6.4E+02 0.014 27.4 32.2 407 179-589 93-575 (881)
489 COG4259 Uncharacterized protei 34.0 2E+02 0.0044 21.5 6.1 51 256-306 58-108 (121)
490 KOG2034 Vacuolar sorting prote 33.4 6.8E+02 0.015 27.4 29.9 52 85-157 365-416 (911)
491 COG5108 RPO41 Mitochondrial DN 33.4 3.1E+02 0.0067 28.7 8.9 90 343-435 33-130 (1117)
492 PRK13342 recombination factor 32.9 5.1E+02 0.011 25.8 19.9 21 422-442 244-264 (413)
493 PF10516 SHNi-TPR: SHNi-TPR; 32.3 91 0.002 18.5 3.3 28 79-106 2-29 (38)
494 KOG1839 Uncharacterized protei 32.2 7.1E+02 0.015 28.7 12.1 153 384-536 943-1122(1236)
495 cd07153 Fur_like Ferric uptake 32.0 1.4E+02 0.0031 22.9 5.6 46 241-286 6-51 (116)
496 smart00544 MA3 Domain in DAP-5 31.8 2.3E+02 0.0051 21.6 10.8 60 447-508 6-67 (113)
497 PF12926 MOZART2: Mitotic-spin 31.7 2E+02 0.0044 20.9 7.7 43 499-541 29-71 (88)
498 PRK11639 zinc uptake transcrip 31.7 2.7E+02 0.0059 23.4 7.4 67 495-562 8-74 (169)
499 PF02607 B12-binding_2: B12 bi 30.6 1.5E+02 0.0033 20.7 5.1 41 525-565 13-53 (79)
500 PF01475 FUR: Ferric uptake re 30.2 1.4E+02 0.0031 23.2 5.2 46 240-285 12-57 (120)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.9e-67 Score=548.28 Aligned_cols=510 Identities=18% Similarity=0.248 Sum_probs=468.5
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccch
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHV 132 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (591)
+.|+++.|+++|+++.+... .+.+...+..++..+.+.|.+++|..+++.|.. .+..+
T Consensus 382 r~G~l~eAl~Lfd~M~~~gv-v~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---------------------pd~~T 439 (1060)
T PLN03218 382 RDGRIKDCIDLLEDMEKRGL-LDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---------------------PTLST 439 (1060)
T ss_pred HCcCHHHHHHHHHHHHhCCC-CCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---------------------CCHHH
Confidence 45888888888888876422 233455556778888888888888888887753 23467
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCK 212 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 212 (591)
|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048533 213 SSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMER--EGISPDIVTYNSLIHGFCREGRMREAR 290 (591)
Q Consensus 213 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~g~~~~A~ 290 (591)
.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999986 578999999999999999999999999
Q ss_pred HHHHHhhc--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048533 291 RLFRDIKG--ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKK 368 (591)
Q Consensus 291 ~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 368 (591)
++|+.|.+ ..|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999986 6889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 369 IAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSW 448 (591)
Q Consensus 369 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 448 (591)
+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHH
Q 048533 449 LVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCK----K-------------------EKVDYAQRLFNLMQ 505 (591)
Q Consensus 449 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~ 505 (591)
++.+|++.|+++.|.+++.+|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|.
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI 839 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876532 1 23467999999999
Q ss_pred hCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcchhHHHHHHHHHHhcCCCChHHHH
Q 048533 506 GNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNEILDLFWSHVVDRGLMSKHIFK 584 (591)
Q Consensus 506 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (591)
+.|+.||..+|+.++.++.+.+..+.+..+++.|...+..|+..+|+++|+++++...-.-.++++|.+.|.++.-.|+
T Consensus 840 ~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~~~ 918 (1060)
T PLN03218 840 SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSFK 918 (1060)
T ss_pred HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcccc
Confidence 9999999999999998888999999999999999999999999999999999976554444579999999999876554
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.9e-65 Score=537.39 Aligned_cols=486 Identities=20% Similarity=0.294 Sum_probs=451.3
Q ss_pred hhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHH
Q 048533 57 PSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWL 136 (591)
Q Consensus 57 ~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 136 (591)
...++...+..... ..+...|..+...+.+.|++++|+++|+.|...+..++.. .++..+
T Consensus 353 ~~~~~~~~~~~~~~----~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~----------------v~~~~l 412 (1060)
T PLN03218 353 EENSLAAYNGGVSG----KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDK----------------IYHAKF 412 (1060)
T ss_pred hhhhHHHhccccCC----CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchH----------------HHHHHH
Confidence 34445555544332 2356667888888999999999999999999987654332 345567
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 048533 137 VIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDV 216 (591)
Q Consensus 137 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 216 (591)
+..|.+.|.+++|..+++.|.. |+..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++
T Consensus 413 i~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~v 488 (1060)
T PLN03218 413 FKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCH
Confidence 7889999999999999999875 899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048533 217 DKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDI 296 (591)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 296 (591)
+.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 489 d~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM 568 (1060)
T PLN03218 489 DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEM 568 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hc----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 048533 297 KG----ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPD 372 (591)
Q Consensus 297 ~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 372 (591)
.. ..||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 569 ~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD 648 (1060)
T PLN03218 569 KAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648 (1060)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Confidence 63 68999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 373 NVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDG 452 (591)
Q Consensus 373 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (591)
..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+
T Consensus 649 ~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~g 728 (1060)
T PLN03218 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH----c--
Q 048533 453 YCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWR----A-- 526 (591)
Q Consensus 453 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-- 526 (591)
|++.|++++|.++|++|.+.|+.||..+|+.++.+|.+.|++++|.+++++|.+.|+.||..+|+.++..|.+ +
T Consensus 729 y~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~ 808 (1060)
T PLN03218 729 LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACA 808 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876542 1
Q ss_pred -----------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcchhHHH
Q 048533 527 -----------------GEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNEILD 566 (591)
Q Consensus 527 -----------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 566 (591)
+..++|..+|++|.+.|+.||..+|+.++.++++.+....
T Consensus 809 l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~ 865 (1060)
T PLN03218 809 LGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATL 865 (1060)
T ss_pred hhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHH
Confidence 1246799999999999999999999999998888776543
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-63 Score=534.65 Aligned_cols=502 Identities=18% Similarity=0.213 Sum_probs=468.1
Q ss_pred HHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHh
Q 048533 42 AIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVK 121 (591)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 121 (591)
.+...+...+.+.|+.+.|+.+|+.+.+ ++..+|+.++.+|.+.|++++|+++|++|...+..++...+..+++
T Consensus 122 ~~~n~li~~~~~~g~~~~A~~~f~~m~~------~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~ 195 (857)
T PLN03077 122 RLGNAMLSMFVRFGELVHAWYVFGKMPE------RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLR 195 (857)
T ss_pred hHHHHHHHHHHhCCChHHHHHHHhcCCC------CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 4556667778889999999999999742 3678999999999999999999999999999999999888888877
Q ss_pred hcC------------------CCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhH
Q 048533 122 IHD------------------DPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDM 183 (591)
Q Consensus 122 ~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 183 (591)
.+. ....+..+++.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~e 271 (857)
T PLN03077 196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLE 271 (857)
T ss_pred HhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHH
Confidence 553 2345677899999999999999999999999964 688899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048533 184 VWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMER 263 (591)
Q Consensus 184 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 263 (591)
|+++|++|.+.|+.||..+|+.++.+|++.|+.+.|.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|.
T Consensus 272 Al~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~- 350 (857)
T PLN03077 272 GLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME- 350 (857)
T ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048533 264 EGISPDIVTYNSLIHGFCREGRMREARRLFRDIKG--ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTY 341 (591)
Q Consensus 264 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 341 (591)
.||..+|+.++.+|++.|++++|.++|++|.. ..||..+|+.++.+|++.|++++|.++++.+.+.|+.|+..++
T Consensus 351 ---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~ 427 (857)
T PLN03077 351 ---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA 427 (857)
T ss_pred ---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHH
Confidence 47889999999999999999999999999964 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048533 342 NSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKA 421 (591)
Q Consensus 342 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 421 (591)
+.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.
T Consensus 428 n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~ 502 (857)
T PLN03077 428 NALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARI 502 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhh
Confidence 9999999999999999999999875 4888999999999999999999999999986 5899999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048533 422 KEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLF 501 (591)
Q Consensus 422 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 501 (591)
|+++.+.+++..+.+.|+.++..+++.++.+|++.|++++|.++|+.+ .||..+|+.+|.+|++.|+.++|.++|
T Consensus 503 g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf 577 (857)
T PLN03077 503 GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELF 577 (857)
T ss_pred chHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887 469999999999999999999999999
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHhhhcchhHHHH
Q 048533 502 NLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMY-RRRLMITLKIYRSFSASYAKDNEILDL 567 (591)
Q Consensus 502 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~~ 567 (591)
++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|++++++|++.|+.+++
T Consensus 578 ~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 578 NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred HHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence 999999999999999999999999999999999999999 679999999999999999999998875
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.6e-62 Score=522.89 Aligned_cols=505 Identities=18% Similarity=0.242 Sum_probs=474.1
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKI 122 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (591)
....+...+.+.|++++|+.+|+.+... +..++..+|..++.++...+++..+.+++..+.+.+..++..++++++..
T Consensus 154 ~~n~li~~~~~~g~~~~A~~~f~~M~~~--g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~ 231 (857)
T PLN03077 154 SWNVLVGGYAKAGYFDEALCLYHRMLWA--GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITM 231 (857)
T ss_pred EHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHH
Confidence 3445566677789999999999999763 44568899999999999999999999999999999988888888887765
Q ss_pred cC--------------CCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHH
Q 048533 123 HD--------------DPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVY 188 (591)
Q Consensus 123 ~~--------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 188 (591)
+. .+..+..+|+.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.|.+++
T Consensus 232 y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~ 311 (857)
T PLN03077 232 YVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMH 311 (857)
T ss_pred HhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Confidence 42 3345778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 048533 189 KKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISP 268 (591)
Q Consensus 189 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 268 (591)
..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.|
T Consensus 312 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P 387 (857)
T PLN03077 312 GYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387 (857)
T ss_pred HHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999997 4689999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 269 DIVTYNSLIHGFCREGRMREARRLFRDIKG--ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILR 346 (591)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 346 (591)
|..||+.++.+|++.|++++|.+++..+.+ ..|+..+|+.++.+|++.|++++|.++|+.|.+ +|..+|+.++.
T Consensus 388 d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~ 463 (857)
T PLN03077 388 DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIA 463 (857)
T ss_pred CceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHH
Confidence 999999999999999999999999999975 788999999999999999999999999999975 58889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048533 347 KLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDI 426 (591)
Q Consensus 347 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 426 (591)
+|++.|+.++|..+|++|.. ++.||..+|+.++.+|++.|+.+.+.+++..+.+.|+.++..+++.++.+|++.|++++
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~ 542 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHH
Confidence 99999999999999999986 59999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-
Q 048533 427 AKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQ- 505 (591)
Q Consensus 427 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~- 505 (591)
|..+|+.+ .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.
T Consensus 543 A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~ 617 (857)
T PLN03077 543 AWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE 617 (857)
T ss_pred HHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence 99999987 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcchhHHH
Q 048533 506 GNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNEILD 566 (591)
Q Consensus 506 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 566 (591)
+.|+.|+..+|+.++++|.+.|++++|.+++++|. +.||..+|++|+.+|...|+.+.
T Consensus 618 ~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~ 675 (857)
T PLN03077 618 KYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVEL 675 (857)
T ss_pred HhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHH
Confidence 68999999999999999999999999999999983 78999999999999988877653
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.6e-60 Score=497.43 Aligned_cols=472 Identities=16% Similarity=0.177 Sum_probs=444.1
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+...+..++..+.+.|++++|.++|+.|...++. ..+..+|+.++.++.+.++++.|.+++..|
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~----------------~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m 149 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPF----------------TLPASTYDALVEACIALKSIRCVKAVYWHV 149 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC----------------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3446788999999999999999999999875421 234567888999999999999999999999
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcc
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLF 236 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 236 (591)
.+.|+.||..+|+.++..|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|...|+.|+..
T Consensus 150 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~ 225 (697)
T PLN03081 150 ESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR 225 (697)
T ss_pred HHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChh
Confidence 9999999999999999999999999999999999964 799999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 048533 237 TYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRA 316 (591)
Q Consensus 237 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~ 316 (591)
+|+.++.+++..|..+.+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|+.|. .+|..+|+.++.+|++.
T Consensus 226 t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~~~vt~n~li~~y~~~ 303 (697)
T PLN03081 226 TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP--EKTTVAWNSMLAGYALH 303 (697)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC--CCChhHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999997 57999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 048533 317 NDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVK 396 (591)
Q Consensus 317 g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 396 (591)
|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++.|+.+|++.|++++|.++|
T Consensus 304 g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf 383 (697)
T PLN03081 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF 383 (697)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCC
Q 048533 397 NRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVS-RGLC 475 (591)
Q Consensus 397 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~ 475 (591)
++|. .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+ .|+.
T Consensus 384 ~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~ 459 (697)
T PLN03081 384 DRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK 459 (697)
T ss_pred HhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC
Confidence 9986 4689999999999999999999999999999999999999999999999999999999999999986 5899
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 476 VDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFS 555 (591)
Q Consensus 476 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 555 (591)
|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|+.++.+|...|+++.|..+++++.+.+.. +..+|..|+
T Consensus 460 p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~ 535 (697)
T PLN03081 460 PRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLL 535 (697)
T ss_pred CCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHH
Confidence 99999999999999999999999998876 57899999999999999999999999999999765422 467999999
Q ss_pred HhhhcchhHHHH--HHHHHHhcCCC
Q 048533 556 ASYAKDNEILDL--FWSHVVDRGLM 578 (591)
Q Consensus 556 ~~~~~~~~~~~~--~~~~~~~~~~~ 578 (591)
+.|++.|+.+++ +++.|.+.|..
T Consensus 536 ~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 536 NLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 999999998875 68888888864
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.6e-58 Score=482.35 Aligned_cols=469 Identities=17% Similarity=0.272 Sum_probs=436.6
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKI 122 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (591)
+..++..+ .+.|++++|+++|+++....| +.++..+|..++.++.+.++++.|.+++..|.+.+..+
T Consensus 90 ~~~~i~~l-~~~g~~~~Al~~f~~m~~~~~-~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~----------- 156 (697)
T PLN03081 90 LCSQIEKL-VACGRHREALELFEILEAGCP-FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP----------- 156 (697)
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-----------
Confidence 44444443 456999999999999986433 35688999999999999999999999999999887544
Q ss_pred cCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 048533 123 HDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHL 202 (591)
Q Consensus 123 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 202 (591)
+..+++.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+
T Consensus 157 ------~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t 226 (697)
T PLN03081 157 ------DQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRT 226 (697)
T ss_pred ------chHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhh
Confidence 445788888999999999999999999964 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048533 203 YNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCR 282 (591)
Q Consensus 203 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 282 (591)
|+.++.+|++.|..+.+.+++..+.+.|+.+|..+|+.|+.+|++.|++++|.++|++|. .+|..+|+.++.+|++
T Consensus 227 ~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~ 302 (697)
T PLN03081 227 FVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYAL 302 (697)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999996 4699999999999999
Q ss_pred cCCHHHHHHHHHHhhc--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048533 283 EGRMREARRLFRDIKG--ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRL 360 (591)
Q Consensus 283 ~g~~~~A~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 360 (591)
.|++++|.++|++|.. ..||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++
T Consensus 303 ~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~v 382 (697)
T PLN03081 303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV 382 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999964 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCC
Q 048533 361 LNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLD-AGF 439 (591)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~ 439 (591)
|++|.+ ||..+|+.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+ .|+
T Consensus 383 f~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~ 458 (697)
T PLN03081 383 FDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI 458 (697)
T ss_pred HHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Confidence 999965 589999999999999999999999999999999999999999999999999999999999999986 699
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc-CHHHHHH
Q 048533 440 SPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILG-DSVIYTS 518 (591)
Q Consensus 440 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ 518 (591)
.|+..+|+.++.+|++.|++++|.++++++ ++.|+..+|+.++.+|...|+++.|..+++++.+. .| +..+|..
T Consensus 459 ~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~ 533 (697)
T PLN03081 459 KPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVV 533 (697)
T ss_pred CCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHH
Confidence 999999999999999999999999998765 57899999999999999999999999999999764 45 4679999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 048533 519 LAYAYWRAGEPKACSDILDDMYRRRLMIT 547 (591)
Q Consensus 519 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 547 (591)
++..|.+.|++++|.++++.|.+.|+...
T Consensus 534 L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 534 LLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 99999999999999999999999998643
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=9.6e-33 Score=304.06 Aligned_cols=513 Identities=12% Similarity=0.073 Sum_probs=382.1
Q ss_pred CChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHH
Q 048533 38 LTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLN 117 (591)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 117 (591)
+.+..+...++..+...|++++|...|+.+.+..|. +...+..++..+...|++++|...++.+...++........
T Consensus 360 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 436 (899)
T TIGR02917 360 PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE---NAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLL 436 (899)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHH
Confidence 333344445555666667777777777777665554 55666667777777777777777777766654332211110
Q ss_pred ----------------HHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCCh
Q 048533 118 ----------------ALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLT 181 (591)
Q Consensus 118 ----------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 181 (591)
.+-+.....+.++.++..++..|...|++++|++.|+++.+.++. +...+..++..+...|++
T Consensus 437 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~ 515 (899)
T TIGR02917 437 LILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNP 515 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCH
Confidence 011111233456667777888888888888888888888776544 566677777788888888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 048533 182 DMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRM 261 (591)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 261 (591)
+.|.+.|+.+.+.++. +..++..+...+.+.|++++|..+++++...+ +.+...+..++..+...|++++|..+++++
T Consensus 516 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 593 (899)
T TIGR02917 516 DDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEA 593 (899)
T ss_pred HHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888888888776544 66777778888888888888888888877664 445667777888888888888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 048533 262 EREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATP-NHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVT 340 (591)
Q Consensus 262 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 340 (591)
.+.. +.+..+|..+...+...|++++|...|+.+.+..| +...+..+..++...|++++|..+++.+.+.. +.+..+
T Consensus 594 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 671 (899)
T TIGR02917 594 ADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEA 671 (899)
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 7653 34667788888888888888888888888776444 45667778888888888888888888887753 335677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048533 341 YNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCK 420 (591)
Q Consensus 341 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 420 (591)
+..+...+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|...|+.+...+ |+..++..+..++.+
T Consensus 672 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 672 QIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHH
Confidence 7888888888888888888888887764 4466777778888888888888888888888764 444667778888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048533 421 AKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRL 500 (591)
Q Consensus 421 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 500 (591)
.|++++|...++.+.+.. +.+...+..+...|...|+.++|.+.|+++.+..+ .++.+++.+...+...|+ .+|+..
T Consensus 749 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~ 825 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEY 825 (899)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHH
Confidence 888888888888888754 45677888888888888888888888888887754 477888888888888888 778888
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcchhHHH
Q 048533 501 FNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNEILD 566 (591)
Q Consensus 501 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 566 (591)
++++.+.. +.+..++..+..++...|++++|..+++++.+.+.. ++.++..+..+|.+.|+..+
T Consensus 826 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~ 889 (899)
T TIGR02917 826 AEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAE 889 (899)
T ss_pred HHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHH
Confidence 88888752 335567778888888889999999999999887754 78888888888888888877
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.8e-31 Score=290.54 Aligned_cols=528 Identities=13% Similarity=0.063 Sum_probs=386.0
Q ss_pred HHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHH---
Q 048533 41 TAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLN--- 117 (591)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--- 117 (591)
......+...+...|++++|+..++.+....|. +..++..++.++.+.|++++|.++|+++...++........
T Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 405 (899)
T TIGR02917 329 HQARRLLASIQLRLGRVDEAIATLSPALGLDPD---DPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGI 405 (899)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 333444555555667777777777776665544 56666777777777888888888887776654432211110
Q ss_pred -------------HHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHH
Q 048533 118 -------------ALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMV 184 (591)
Q Consensus 118 -------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 184 (591)
.+.+.....+........++..|.+.|++++|+++++.+....+. +..++..+...+...|++++|
T Consensus 406 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 484 (899)
T TIGR02917 406 SKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD-NASLHNLLGAIYLGKGDLAKA 484 (899)
T ss_pred HHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHhCCCHHHH
Confidence 000011122334455556667777777777777777777765433 666777788888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 185 WKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
.+.|+++.+..+. +...+..+...+...|++++|.+.++++...+ +.+..++..+...+.+.|++++|...++++...
T Consensus 485 ~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 562 (899)
T TIGR02917 485 REAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562 (899)
T ss_pred HHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888776543 55666677777888888888888888877654 446677777888888888888888888887765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 265 GISPDIVTYNSLIHGFCREGRMREARRLFRDIKGA-TPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNS 343 (591)
Q Consensus 265 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 343 (591)
+ +.+...+..++..+...|++++|..+++.+... +.+...|..+..++...|++++|...|+.+.+.. +.+...+..
T Consensus 563 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 640 (899)
T TIGR02917 563 N-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLL 640 (899)
T ss_pred C-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 3 235566777888888888888888888887763 3356778888888888888888888888887653 335667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048533 344 ILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKE 423 (591)
Q Consensus 344 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 423 (591)
+..++.+.|++++|...++++.+.. +.+..++..++..+...|++++|..+++.+.... +.+...+..+...+...|+
T Consensus 641 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 718 (899)
T TIGR02917 641 LADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKD 718 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCC
Confidence 8888888888888888888887753 3356778888888888888888888888887765 3467777788888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 424 MDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNL 503 (591)
Q Consensus 424 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 503 (591)
+++|...+..+...+ |+..++..+..++.+.|++++|.+.++.+.+..+ .+..++..+...|...|++++|...|++
T Consensus 719 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 795 (899)
T TIGR02917 719 YPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRT 795 (899)
T ss_pred HHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 888888888888764 4456777788888888888888888888887654 3778888888888888999999999998
Q ss_pred HHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcchhHHHH--HHHHHHhcCCCChH
Q 048533 504 MQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNEILDL--FWSHVVDRGLMSKH 581 (591)
Q Consensus 504 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~--~~~~~~~~~~~~~~ 581 (591)
+.+.. +++..++..+...+...|+ .+|+.+++++.+... .++..+..+...|...|+..++ .++++++.+.....
T Consensus 796 ~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 872 (899)
T TIGR02917 796 VVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAA 872 (899)
T ss_pred HHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Confidence 88763 4567788888888888888 778888888888643 2456677788888888887775 57777777666555
Q ss_pred HHH
Q 048533 582 IFK 584 (591)
Q Consensus 582 ~~~ 584 (591)
++-
T Consensus 873 ~~~ 875 (899)
T TIGR02917 873 IRY 875 (899)
T ss_pred HHH
Confidence 543
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1e-24 Score=240.22 Aligned_cols=541 Identities=11% Similarity=0.016 Sum_probs=360.2
Q ss_pred HHHHHHHHHhccccc---hhcCCCCCCCCChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHH---------
Q 048533 13 FIKTISAIMLKGHWA---KLLNPNIASSLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQS--------- 80 (591)
Q Consensus 13 ~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~--------- 80 (591)
+..++.-...+++.. ..+...+...|++..+...+..+....|++++|...++.+.+..|+ +..+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~---~~~~~~~~~~~~~ 107 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD---SNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHh
Confidence 444444444444432 3333344456666666677777888889999999999999998887 4333
Q ss_pred -------HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHH---HHH--------------HHhhcCCCCCccchHHHH
Q 048533 81 -------HWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSV---LNA--------------LVKIHDDPDGNSHVLSWL 136 (591)
Q Consensus 81 -------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~--------------~~~~~~~~~~~~~~~~~l 136 (591)
...++..+.+.|++++|.+.|+++...++...... ... +-++....|.+..+...+
T Consensus 108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~L 187 (1157)
T PRK11447 108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTL 187 (1157)
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 24456789999999999999999988765543211 111 111223446677888999
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCc--------------------------------cCHHhH----------------
Q 048533 137 VIFYANLKMTQDGLQVFDQMRVHNLM--------------------------------PHLHAC---------------- 168 (591)
Q Consensus 137 ~~~~~~~~~~~~A~~~~~~~~~~~~~--------------------------------~~~~~~---------------- 168 (591)
+..+...|+.++|+..++++.+.... |+....
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 99999999999999999988653210 000000
Q ss_pred -----HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcC-cccHH---
Q 048533 169 -----TVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRAD-LFTYN--- 239 (591)
Q Consensus 169 -----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~--- 239 (591)
......+...|++++|+..|++..+..+. +...+..+..++.+.|++++|...|++..+...... ...|.
T Consensus 268 p~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 268 PAFRARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred cchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 01234566789999999999999987654 778888899999999999999999999887642211 11121
Q ss_pred ---------HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC-hhhHHHH
Q 048533 240 ---------TLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPN-HVTYTTL 309 (591)
Q Consensus 240 ---------~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l 309 (591)
.....+.+.|++++|...|+++.+... .+...+..+...+...|++++|++.|+++....|+ ...+..+
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L 425 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGL 425 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 224567789999999999999988743 35667788899999999999999999998875555 3344444
Q ss_pred HHHH------------------------------------------HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 310 IDGY------------------------------------------CRANDLEEALRLREVMAAKGVYPGVVTYNSILRK 347 (591)
Q Consensus 310 i~~~------------------------------------------~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 347 (591)
...| ...|++++|.+.|++..+.. +-+...+..+...
T Consensus 426 ~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~ 504 (1157)
T PRK11447 426 ANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQD 504 (1157)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4333 23444555555555444432 1123334444444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---------HHHHHHHHHH
Q 048533 348 LCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQ---------FTYKALIHGF 418 (591)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~ 418 (591)
+.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+......++. ..+..+...+
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 555555555555555544431 112333333333344445555555544443221111111 0112334455
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048533 419 CKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQ 498 (591)
Q Consensus 419 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 498 (591)
...|+.++|..+++. .+.+...+..+...+.+.|+.++|+..++++.+..+. +...+..++..+...|++++|+
T Consensus 584 ~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 666777777776651 2456667778889999999999999999999987654 7889999999999999999999
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC--C---CHHHHHHHHHhhhcchhHHHH
Q 048533 499 RLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLM--I---TLKIYRSFSASYAKDNEILDL 567 (591)
Q Consensus 499 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~---~~~~~~~li~~~~~~~~~~~~ 567 (591)
+.++.+.+.. +.+...+..+..++...|++++|.++++++...... | +...+..+...+...|+..++
T Consensus 658 ~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A 730 (1157)
T PRK11447 658 AQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQA 730 (1157)
T ss_pred HHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 9999888652 234567788889999999999999999999886432 2 223555667777777776664
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=2.2e-23 Score=229.73 Aligned_cols=523 Identities=13% Similarity=0.023 Sum_probs=347.5
Q ss_pred CChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHH-
Q 048533 38 LTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVL- 116 (591)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~- 116 (591)
+++....-...+++...++++.|.+.+.++....|+ ++.++..++.++.+.|+.++|.+.++++.+.+|.+.....
T Consensus 25 ~~~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~---~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~ 101 (1157)
T PRK11447 25 PTAQQQLLEQVRLGEATHREDLVRQSLYRLELIDPN---NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSS 101 (1157)
T ss_pred CCHHHHHHHHHHHHHhhCChHHHHHHHHHHHccCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHH
Confidence 334333333456777789999999999999998887 8999999999999999999999999999998876544321
Q ss_pred HHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048533 117 NALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGV 196 (591)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 196 (591)
...+.. ...+......++..+.+.|++++|++.|+.+.+.++.................|+.++|++.++++.+..+
T Consensus 102 ~~~~~~---~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P 178 (1157)
T PRK11447 102 RTTMLL---STPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP 178 (1157)
T ss_pred HHHHHh---cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC
Confidence 111111 11122234556667888888888888888888765432221221222222345788888888888887765
Q ss_pred CCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCC----------------C----------------cCcccH------
Q 048533 197 VANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDV----------------R----------------ADLFTY------ 238 (591)
Q Consensus 197 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------------~----------------~~~~~~------ 238 (591)
. +...+..+...+...|++++|+..++++..... . |+....
T Consensus 179 ~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~ 257 (1157)
T PRK11447 179 G-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQ 257 (1157)
T ss_pred C-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHH
Confidence 4 566777777888888888888888877643210 0 000000
Q ss_pred ---------------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCh
Q 048533 239 ---------------NTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNH 303 (591)
Q Consensus 239 ---------------~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 303 (591)
......+...|++++|+..|++..+... .+..++..+...+.+.|++++|+..|++.....|+.
T Consensus 258 L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~ 336 (1157)
T PRK11447 258 LAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHS 336 (1157)
T ss_pred HHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 0113345567888888888888877532 256777888888888888888888888877655542
Q ss_pred h---hH------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048533 304 V---TY------------TTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKK 368 (591)
Q Consensus 304 ~---~~------------~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 368 (591)
. .| ......+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++.|+++++..
T Consensus 337 ~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~ 415 (1157)
T PRK11447 337 SNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD 415 (1157)
T ss_pred cchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1 11 122345667888888888888887763 2345666677778888888888888888877653
Q ss_pred CCCChHHHHH------------------------------------------HHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 048533 369 IAPDNVTCNT------------------------------------------LINAYCKIGDTASAMKVKNRMLEAGLML 406 (591)
Q Consensus 369 ~~~~~~~~~~------------------------------------------li~~~~~~~~~~~a~~~~~~~~~~~~~~ 406 (591)
.. +...+.. +...+...|++++|...+++..+..+ -
T Consensus 416 p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~ 493 (1157)
T PRK11447 416 PG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-G 493 (1157)
T ss_pred CC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-C
Confidence 21 2223222 22334567888888888888877642 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------------
Q 048533 407 DQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSR-------------- 472 (591)
Q Consensus 407 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------- 472 (591)
+...+..+...|.+.|++++|...++++++.. +.+...+..+...+...++.++|...++.+...
T Consensus 494 ~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~ 572 (1157)
T PRK11447 494 SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQ 572 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHh
Confidence 56677778888888888888888888887643 223333322222333344444444433322100
Q ss_pred -------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcC
Q 048533 473 -------------------------GLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAG 527 (591)
Q Consensus 473 -------------------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 527 (591)
..+.++..+..+...+.+.|++++|+..|+++.+.. +.+...+..++.+|...|
T Consensus 573 ~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g 651 (1157)
T PRK11447 573 SDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQG 651 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 123355566778888889999999999999998863 335688888999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcchhHHHH--HHHHHHh
Q 048533 528 EPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNEILDL--FWSHVVD 574 (591)
Q Consensus 528 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~--~~~~~~~ 574 (591)
++++|.+.++.+.+... .++..+..+..++...|+..++ ..+..++
T Consensus 652 ~~~eA~~~l~~ll~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 652 DLAAARAQLAKLPATAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred CHHHHHHHHHHHhccCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 99999999998877532 2455667777888888887764 3555544
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=8.9e-25 Score=203.98 Aligned_cols=440 Identities=13% Similarity=0.067 Sum_probs=344.8
Q ss_pred CCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchH
Q 048533 54 CHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL 133 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (591)
.|++..|++.....-..+|. +......+..++.+..+++...+--....+.+ +.-.++|
T Consensus 61 ~gd~~~a~~h~nmv~~~d~t---~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~------------------~q~ae~y 119 (966)
T KOG4626|consen 61 GGDYKQAEKHCNMVGQEDPT---NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN------------------PQGAEAY 119 (966)
T ss_pred ccCHHHHHHHHhHhhccCCC---cccceeeehhhhhcccchhhhhhhhhhhhhcc------------------chHHHHH
Confidence 35666666655555443443 33333344445555555555444433333322 3344678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKS 213 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 213 (591)
+.++..+-..|++++|+.+++.+++..++ .+.+|..+..++...|+.+.|.+.|.+.++.++. ..-....+...+-..
T Consensus 120 sn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqlnP~-l~ca~s~lgnLlka~ 197 (966)
T KOG4626|consen 120 SNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLNPD-LYCARSDLGNLLKAE 197 (966)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc-hhhhhcchhHHHHhh
Confidence 88999999999999999999999998766 7889999999999999999999999999886532 223344455666678
Q ss_pred CChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 048533 214 SDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPD-IVTYNSLIHGFCREGRMREARRL 292 (591)
Q Consensus 214 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 292 (591)
|++++|...|.+.++.. +-=..+|..|...+-..|+...|++.|++..+. .|+ ...|..|...|...+.+++|...
T Consensus 198 Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred cccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHH
Confidence 99999999888877653 234678999999999999999999999998875 444 46788899999999999999999
Q ss_pred HHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048533 293 FRDIKGATPN-HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPG-VVTYNSILRKLCKEGRIRDANRLLNEMNEKKIA 370 (591)
Q Consensus 293 ~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 370 (591)
+.+.....|+ ...+..+...|...|.++-|+..|++..+. .|+ +..|+.+..++-..|++.+|...|.+.+... +
T Consensus 275 Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p 351 (966)
T KOG4626|consen 275 YLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-P 351 (966)
T ss_pred HHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-C
Confidence 9998887776 677888888999999999999999999886 343 5689999999999999999999999988863 3
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 048533 371 PDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLD-QFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPS-YCSYSW 448 (591)
Q Consensus 371 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ 448 (591)
....+.+.|...+...|.+++|..+|....+. .|. ....+.|...|-+.|++++|...+++.++ +.|+ ...|+.
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~N 427 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSN 427 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHh
Confidence 35678899999999999999999999988875 333 56788899999999999999999999987 4566 578899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH-HHHHHHHHHHHHcC
Q 048533 449 LVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDS-VIYTSLAYAYWRAG 527 (591)
Q Consensus 449 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 527 (591)
+...|...|+.+.|++.+.+++..++. -...++.|...|..+|++.+|++-|++..+ ++||. ..|..++.++---.
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vc 504 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVC 504 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHh
Confidence 999999999999999999999986543 467888999999999999999999999987 46665 67777777765444
Q ss_pred Ch
Q 048533 528 EP 529 (591)
Q Consensus 528 ~~ 529 (591)
++
T Consensus 505 dw 506 (966)
T KOG4626|consen 505 DW 506 (966)
T ss_pred cc
Confidence 43
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=1.7e-24 Score=202.08 Aligned_cols=442 Identities=16% Similarity=0.104 Sum_probs=369.6
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 81 HWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 81 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
...+++-+.+.|+|++|.+.....-..++ .+...+..+-..|.+..++++....-....+.+
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~------------------t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~ 112 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDP------------------TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN 112 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCC------------------Ccccceeeehhhhhcccchhhhhhhhhhhhhcc
Confidence 56788889999999999998877665543 233334445566778888888777666666665
Q ss_pred CccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCccc-HH
Q 048533 161 LMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFT-YN 239 (591)
Q Consensus 161 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~ 239 (591)
+. -.++|..+.+.+...|+++.|+..|+.+++..++ ....|..+..++...|+.+.|.+.|.+.++.+ |+... ..
T Consensus 113 ~q-~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s 188 (966)
T KOG4626|consen 113 PQ-GAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARS 188 (966)
T ss_pred ch-HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhc
Confidence 44 6789999999999999999999999999998765 78899999999999999999999999988763 55443 34
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC-hhhHHHHHHHHHhcC
Q 048533 240 TLIALYCKKGMHYEALAVQDRMEREGISPD-IVTYNSLIHGFCREGRMREARRLFRDIKGATPN-HVTYTTLIDGYCRAN 317 (591)
Q Consensus 240 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g 317 (591)
.+...+...|+.++|...|.+.++. .|. ...|+.|...+-..|+...|+..|++.....|+ ...|-.+...|...+
T Consensus 189 ~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 189 DLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEAR 266 (966)
T ss_pred chhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHh
Confidence 4556666789999999999998876 343 467899999999999999999999999998898 678999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 048533 318 DLEEALRLREVMAAKGVYPG-VVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVK 396 (591)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 396 (591)
.+++|...|.+.... .|+ ...+..+...|...|.++-|+..|++.++.... -...|+.|..++-..|++.+|...|
T Consensus 267 ~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred cchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHH
Confidence 999999999888765 444 566777777889999999999999999987322 4578999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048533 397 NRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPS-YCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLC 475 (591)
Q Consensus 397 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 475 (591)
.+..... +......+.|...+...|.+++|..+|....+.. |. ....+.|...|.++|++++|+..+++++.. .
T Consensus 344 nkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~--p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~ 418 (966)
T KOG4626|consen 344 NKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF--PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--K 418 (966)
T ss_pred HHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--C
Confidence 9998874 3357889999999999999999999999998743 44 467888999999999999999999999975 4
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHH
Q 048533 476 VD-VSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDS-VIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITL-KIYR 552 (591)
Q Consensus 476 ~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~ 552 (591)
|+ ...|+.+...|...|+.+.|.+.+.+.+.. .|.. ..++.|...|...|+..+|++-|++.++ ++||. ..|.
T Consensus 419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~c 494 (966)
T KOG4626|consen 419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYC 494 (966)
T ss_pred chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhh
Confidence 44 568999999999999999999999999974 5554 7889999999999999999999999999 45664 3566
Q ss_pred HHHHhh
Q 048533 553 SFSASY 558 (591)
Q Consensus 553 ~li~~~ 558 (591)
.+++++
T Consensus 495 Nllh~l 500 (966)
T KOG4626|consen 495 NLLHCL 500 (966)
T ss_pred HHHHHH
Confidence 666554
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=1.1e-20 Score=198.94 Aligned_cols=497 Identities=13% Similarity=0.069 Sum_probs=312.6
Q ss_pred CCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHH-------------
Q 048533 54 CHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALV------------- 120 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~------------- 120 (591)
.|++++|+..|+.+++..|+ +..++..++.+|.+.|++++|+..+++..+.++.. ......+.
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~---n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n-~~~~~~La~i~~~~kA~~~ye 132 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPD---NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGD-ARLERSLAAIPVEVKSVTTVE 132 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc-HHHHHHHHHhccChhHHHHHH
Confidence 37777777777777777776 67777777777777777777777777777765521 11111111
Q ss_pred hhcCCCCCccchHHHHHHH--------HHhcCChHHHHHHHHHHhhCCCccCHHhHHHH-HHHHHhcCChhHHHHHHHHH
Q 048533 121 KIHDDPDGNSHVLSWLVIF--------YANLKMTQDGLQVFDQMRVHNLMPHLHACTVL-LNSLAKDRLTDMVWKVYKKM 191 (591)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~ 191 (591)
++....|.+.+++..++.. |.+.++..++++ .....+.|+..+.... .+.|.+.|+++.|++.+.++
T Consensus 133 ~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 133 ELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH----HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 1222345566666666665 555544444443 2222233334434433 67777777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHc-cCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC
Q 048533 192 VQLGVVANIHLYNVLIHACCK-SSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGIS-PD 269 (591)
Q Consensus 192 ~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~ 269 (591)
.+.++. +......+..+|.. .++ +.+..+++.. ++.+...+..++..+.+.|+.++|.+.+.++...-.. |.
T Consensus 209 ~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~ 282 (987)
T PRK09782 209 RQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQ 282 (987)
T ss_pred HhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCc
Confidence 776644 44445555556665 355 5555554421 2235666666777777777777776666665432111 11
Q ss_pred HHHH------------------------------HHHHHHH---------------------------------------
Q 048533 270 IVTY------------------------------NSLIHGF--------------------------------------- 280 (591)
Q Consensus 270 ~~~~------------------------------~~l~~~~--------------------------------------- 280 (591)
..++ ..++..+
T Consensus 283 ~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 362 (987)
T PRK09782 283 EKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEAL 362 (987)
T ss_pred cHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHH
Confidence 1111 0001222
Q ss_pred ------------------------HhcCCHHHHHHHHHHhhcCCC----ChhhHHHHHHHHHhcCC---HHHHHHH----
Q 048533 281 ------------------------CREGRMREARRLFRDIKGATP----NHVTYTTLIDGYCRAND---LEEALRL---- 325 (591)
Q Consensus 281 ------------------------~~~g~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~g~---~~~a~~~---- 325 (591)
...|+.++|.++|+......+ +....+.++..|.+.+. ..++..+
T Consensus 363 ~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~ 442 (987)
T PRK09782 363 RLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPL 442 (987)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccc
Confidence 234555555555555433211 12223344555555444 2222111
Q ss_pred ------------------HHHHHHC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 048533 326 ------------------REVMAAK-GV-YP--GVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAY 383 (591)
Q Consensus 326 ------------------~~~~~~~-~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 383 (591)
++..... +. ++ +...+..+..++.. ++.++|...+.+.... .|+......+...+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al 519 (987)
T PRK09782 443 PLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQA 519 (987)
T ss_pred ccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHH
Confidence 1111111 11 22 45556666666655 7888888878777765 35544444445555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048533 384 CKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALL 463 (591)
Q Consensus 384 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 463 (591)
...|++++|...|+++... +|+...+..+...+.+.|++++|...++..++.. +.+...+..+.......|++++|.
T Consensus 520 ~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 520 YQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHH
Confidence 7899999999999987665 4455556677788889999999999999998865 233333444444455669999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 464 KLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
..++++.+.. |+...+..+..++.+.|++++|...+++..+.. +.+...+..+..++...|++++|+..++++.+..
T Consensus 597 ~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 597 NDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999864 468889999999999999999999999999863 3356788889999999999999999999999975
Q ss_pred CCCCHHHHHHHHHhhhcchhHHHH--HHHHHHh
Q 048533 544 LMITLKIYRSFSASYAKDNEILDL--FWSHVVD 574 (591)
Q Consensus 544 ~~~~~~~~~~li~~~~~~~~~~~~--~~~~~~~ 574 (591)
. -++..+..+..++...|+.+++ .+++.++
T Consensus 674 P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 674 P-DDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4 3567888999999999988764 3555544
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=5.3e-21 Score=188.30 Aligned_cols=505 Identities=12% Similarity=0.034 Sum_probs=369.7
Q ss_pred CCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHH-------------
Q 048533 54 CHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALV------------- 120 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~------------- 120 (591)
.+++..|+.+|..++..+|..+.++. ..++..+.+.|+.+.|+..|+++.+.+|.+...+..-.+
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~ 254 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKK 254 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHH
Confidence 48999999999999998998766664 456788889999999999999999988754433321111
Q ss_pred ------hhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc--cCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048533 121 ------KIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLM--PHLHACTVLLNSLAKDRLTDMVWKVYKKMV 192 (591)
Q Consensus 121 ------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 192 (591)
+.+...+.+|.+++.|...|.-.|++..+..+...+...... .-...|..+.+++...|+++.|...|....
T Consensus 255 ~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 255 GVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL 334 (1018)
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 122344668888899999999999999999988888776422 123468888899999999999999998887
Q ss_pred HCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcC----ChhHHHHHHHHHHHCCCCC
Q 048533 193 QLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKG----MHYEALAVQDRMEREGISP 268 (591)
Q Consensus 193 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~~~~~~~~p 268 (591)
+.........+--+...+.+.|+++.+...|+.+.... +-+..+...|...|...+ ..+.|..++.+..+.- +.
T Consensus 335 k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~ 412 (1018)
T KOG2002|consen 335 KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PV 412 (1018)
T ss_pred ccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cc
Confidence 76544223445567788889999999999999888763 445667777777777664 4566677776666553 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCC---
Q 048533 269 DIVTYNSLIHGFCREGRMREARRLFRDIKG------ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAK---GVYP--- 336 (591)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~p--- 336 (591)
|...|..+...+...+.+.. +.+|..+.. ..+-....|.+...+...|++.+|...|+..... ...+
T Consensus 413 d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~ 491 (1018)
T KOG2002|consen 413 DSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG 491 (1018)
T ss_pred cHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc
Confidence 67778777777765544333 666655531 2356777888888888899999999888887654 1122
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 337 ---GVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKA 413 (591)
Q Consensus 337 ---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 413 (591)
+..+-..+..++-..++.+.|.+.|..+++.. +--...|..++......+...+|...++...... ..++..++.
T Consensus 492 ~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl 569 (1018)
T KOG2002|consen 492 KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSL 569 (1018)
T ss_pred ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHH
Confidence 22233445556667788889999999888762 2122334444433344567888888888887764 346677777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCCHHH
Q 048533 414 LIHGFCKAKEMDIAKELLFGMLDAG-FSPSYCSYSWLVDGYCN------------KNNEEALLKLLDEFVSRGLCVDVSV 480 (591)
Q Consensus 414 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~ 480 (591)
+...+.+...+..|..-|..+.... ..+|..+.-.|...|.. .+..+.|+++|.++++..+. |...
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yA 648 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYA 648 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhh
Confidence 7778888888888888776666432 23566666666665542 23467899999999987665 8889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHhhh
Q 048533 481 YRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRR-RLMITLKIYRSFSASYA 559 (591)
Q Consensus 481 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~ 559 (591)
-|.+.-+++..|++.+|..+|.+.++.. .-...+|..+.++|.-+|+|-.|+++|+...+. +...+......|.+++.
T Consensus 649 ANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y 727 (1018)
T KOG2002|consen 649 ANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWY 727 (1018)
T ss_pred ccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 9999999999999999999999999863 336688999999999999999999999999886 55567888999999999
Q ss_pred cchhHHHH
Q 048533 560 KDNEILDL 567 (591)
Q Consensus 560 ~~~~~~~~ 567 (591)
+.|.+.++
T Consensus 728 ~~~~~~ea 735 (1018)
T KOG2002|consen 728 EAGKLQEA 735 (1018)
T ss_pred HhhhHHHH
Confidence 99987664
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=1.4e-19 Score=190.67 Aligned_cols=197 Identities=13% Similarity=0.006 Sum_probs=142.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 372 DNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVD 451 (591)
Q Consensus 372 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 451 (591)
+...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...++++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 34455555555555 6777788877777665 355444444455556889999999999887654 344455666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhH
Q 048533 452 GYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKA 531 (591)
Q Consensus 452 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 531 (591)
.+.+.|+.++|...++.+.+.++. +...+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHH
Confidence 888899999999999999886532 3333444444455669999999999999875 5678888999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHhhhcchhHHHH--HHHHHHhcCC
Q 048533 532 CSDILDDMYRRRLMITLKIYRSFSASYAKDNEILDL--FWSHVVDRGL 577 (591)
Q Consensus 532 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~--~~~~~~~~~~ 577 (591)
|...++++.+.... ++..++.+...+...|+..++ .....++...
T Consensus 628 A~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 628 AVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 99999999997533 566788888888888888775 3555554433
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=1.3e-19 Score=187.88 Aligned_cols=254 Identities=11% Similarity=-0.022 Sum_probs=141.0
Q ss_pred CCHHHHHHHHHHhhcC---CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048533 284 GRMREARRLFRDIKGA---TP-NHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANR 359 (591)
Q Consensus 284 g~~~~A~~~~~~~~~~---~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 359 (591)
+++++|.+.|+..... .| ....+..+...+...|++++|...+++..... +-....|..+...+...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 4555666666555432 12 23345555555555666666666666655542 1123445555555556666666666
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048533 360 LLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGF 439 (591)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 439 (591)
.++..++.. +.+...|..+...+...|++++|...|++..+... .+...+..+...+.+.|++++|...+++.++..
T Consensus 387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~- 463 (615)
T TIGR00990 387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF- 463 (615)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 666655542 22445566666666666666666666666655532 234555556666666666666666666665532
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH
Q 048533 440 SPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVS------VYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDS 513 (591)
Q Consensus 440 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 513 (591)
+.+...+..+...+...|++++|++.|+++.+.....+.. .++..+..+...|++++|.+++++..+.+ +.+.
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~ 542 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECD 542 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcH
Confidence 2345556666666666666666666666666543221111 11222222333567777777777766542 1233
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 514 VIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 514 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
..+..++.++.+.|++++|+++|+++.+.
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45666777777777777777777776664
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=1.2e-21 Score=193.15 Aligned_cols=302 Identities=16% Similarity=0.120 Sum_probs=229.2
Q ss_pred cCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccc
Q 048533 52 NCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSH 131 (591)
Q Consensus 52 ~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (591)
...|++++|+..|+.+.+..|+ +..++..++..+...|++++|..+++.+.......... ...
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~--------------~~~ 108 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPE---TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ--------------RLL 108 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH--------------HHH
Confidence 3458999999999999988776 78888999999999999999999999988643211110 113
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHH
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANI----HLYNVLI 207 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll 207 (591)
++..++..|.+.|++++|+.+|+++.+.++ ++..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+.
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 567788889999999999999999988654 36778899999999999999999999999887654322 2345566
Q ss_pred HHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048533 208 HACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMR 287 (591)
Q Consensus 208 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 287 (591)
..+.+.|++++|...++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.+......+++.++.+|...|+++
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence 77788888888888888887653 33455677777888888888888888888876533222456677778888888888
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Q 048533 288 EARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCK---EGRIRDANRLLNEM 364 (591)
Q Consensus 288 ~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~ 364 (591)
+|...++++....|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..+++.+
T Consensus 267 ~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 267 EGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 888888887766677666677777788888888888888777765 4677777777766654 44777788888777
Q ss_pred HhCCCCCChH
Q 048533 365 NEKKIAPDNV 374 (591)
Q Consensus 365 ~~~~~~~~~~ 374 (591)
.+.++.|++.
T Consensus 345 ~~~~~~~~p~ 354 (389)
T PRK11788 345 VGEQLKRKPR 354 (389)
T ss_pred HHHHHhCCCC
Confidence 7766555554
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=1.1e-19 Score=187.55 Aligned_cols=334 Identities=11% Similarity=0.004 Sum_probs=218.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHH
Q 048533 167 ACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYC 246 (591)
Q Consensus 167 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 246 (591)
-...++..+.+.|+++.|..+++......+. +...+..++.+....|+++.|...++++.... |.+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3455566666777777777777777766555 34444445555666777777777777776653 335566667777777
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048533 247 KKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLR 326 (591)
Q Consensus 247 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 326 (591)
..|++++|...+++..+.. +.+...+..+...+...|++++|...++.+....|+.......+..+...|++++|...+
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLA 200 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777777777776642 224556666777777777777777777766554443222222223466677777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHH----HHHHHHHHHHC
Q 048533 327 EVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTAS----AMKVKNRMLEA 402 (591)
Q Consensus 327 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~ 402 (591)
+.+.+....++...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++ |...++++.+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 776665333334444445566677777777777777777653 3355666777777777777764 67777777766
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048533 403 GLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYR 482 (591)
Q Consensus 403 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 482 (591)
.+ .+...+..+...+...|++++|...+++.++.. +.+...+..+..++.+.|++++|...++.+.+.++. +...+.
T Consensus 280 ~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~ 356 (656)
T PRK15174 280 NS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNR 356 (656)
T ss_pred CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHH
Confidence 42 356677777777778888888888888777654 234556666777777788888888888777765432 223344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 483 ALIRRFCKKEKVDYAQRLFNLMQGN 507 (591)
Q Consensus 483 ~l~~~~~~~g~~~~a~~~~~~~~~~ 507 (591)
.+..++...|++++|...|+++.+.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4556677778888888888877764
No 19
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.2e-19 Score=179.03 Aligned_cols=473 Identities=13% Similarity=0.048 Sum_probs=364.1
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHH
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLS 134 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (591)
..+.+++..+..+-..+|. ++.+...|+..+...|+++.++++.+.+..... ........+.
T Consensus 250 ~s~~~~~~ll~~ay~~n~~---nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~---------------~~~~~aes~Y 311 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKENNE---NPVALNHLANHFYFKKDYERVWHLAEHAIKNTE---------------NKSIKAESFY 311 (1018)
T ss_pred HHHHHHHHHHHHHHhhcCC---CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh---------------hhHHHHHHHH
Confidence 4566777777777665554 777888888888888899988888888876431 0112335689
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 048533 135 WLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSS 214 (591)
Q Consensus 135 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 214 (591)
+++++|..+|++++|...|.+..+.+..-.+..+-.+...+...|+.+.+...|+.+.+..+. +..+...+...|...+
T Consensus 312 ~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 312 QLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSA 390 (1018)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhh
Confidence 999999999999999999999998865533667788899999999999999999999998654 6677777777787775
Q ss_pred ----ChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCH
Q 048533 215 ----DVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRME----REGISPDIVTYNSLIHGFCREGRM 286 (591)
Q Consensus 215 ----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~p~~~~~~~l~~~~~~~g~~ 286 (591)
..+.|..++.+..... +.|...|-.+...+....- ..++..|.... ..+-.+.+...|.+...+...|++
T Consensus 391 ~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~ 468 (1018)
T KOG2002|consen 391 KKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNI 468 (1018)
T ss_pred hhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcCh
Confidence 5677888888877664 5678888888887765544 44477666543 455557888999999999999999
Q ss_pred HHHHHHHHHhhcC-----CCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCH
Q 048533 287 REARRLFRDIKGA-----TPNH------VTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGV-VTYNSILRKLCKEGRI 354 (591)
Q Consensus 287 ~~A~~~~~~~~~~-----~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~ 354 (591)
++|...|....+. .++. .+--.+..++-..++++.|.+.|..+.+. .|+- ..|..++......+..
T Consensus 469 ~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~ 546 (1018)
T KOG2002|consen 469 EKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNL 546 (1018)
T ss_pred HHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCc
Confidence 9999999998652 2222 22334566667778999999999999886 3443 3444444333455788
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh------------c
Q 048533 355 RDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAG-LMLDQFTYKALIHGFCK------------A 421 (591)
Q Consensus 355 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~ 421 (591)
.+|...++...... ..++..+..+...+.+..++..|.+-|+.+.+.- ..+|..+...|...|.+ .
T Consensus 547 ~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~k 625 (1018)
T KOG2002|consen 547 YEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEK 625 (1018)
T ss_pred HHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHH
Confidence 99999999988753 3467778888889999999988888777776542 23566776667765542 2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048533 422 KEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLF 501 (591)
Q Consensus 422 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 501 (591)
+..++|.++|.++++.. +.|...-+.+.-+++..|++..|..+|.+..+.... ...+|-.+..+|..+|++..|+++|
T Consensus 626 k~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHH
Confidence 45678999999999865 457777788888999999999999999999987432 5678899999999999999999999
Q ss_pred HHHHhC-CCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 502 NLMQGN-GILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRS 553 (591)
Q Consensus 502 ~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 553 (591)
+...+. ...-+..+...|..++.+.|++.+|.+....++..-+..+.+.+|.
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNL 756 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence 987763 4445678899999999999999999999999998766655566664
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=7.8e-19 Score=182.08 Aligned_cols=402 Identities=12% Similarity=-0.065 Sum_probs=294.1
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 81 HWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 81 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
+...+..+.+.|++++|+..|++++...+ ++..+..+..+|.+.|++++|++.++.+++.+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p-------------------~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~ 190 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKP-------------------DPVYYSNRAACHNALGDWEKVVEDTTAALELD 190 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------------------chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 44678899999999999999999887543 23467778889999999999999999999987
Q ss_pred CccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhh------------
Q 048533 161 LMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEF------------ 228 (591)
Q Consensus 161 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------------ 228 (591)
+. +..++..+..++...|++++|+.-|..+...+...+.. ...++..+........+...++.-..
T Consensus 191 p~-~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 268 (615)
T TIGR00990 191 PD-YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYL 268 (615)
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 65 77889999999999999999998887766543221221 11111111110001111111110000
Q ss_pred -------------C--CCCcC-cccHHHHHHHH---HhcCChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHH
Q 048533 229 -------------K--DVRAD-LFTYNTLIALY---CKKGMHYEALAVQDRMEREG-ISP-DIVTYNSLIHGFCREGRMR 287 (591)
Q Consensus 229 -------------~--~~~~~-~~~~~~li~~~---~~~g~~~~a~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~ 287 (591)
. ...++ ...+..+...+ ...+++++|.+.|++..+.+ ..| ....+..+...+...|+++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~ 348 (615)
T TIGR00990 269 QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHL 348 (615)
T ss_pred HHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHH
Confidence 0 00000 01111111111 22468899999999998764 223 4567888888889999999
Q ss_pred HHHHHHHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 288 EARRLFRDIKGATPN-HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNE 366 (591)
Q Consensus 288 ~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 366 (591)
+|+..+++.....|+ ...|..+..++...|++++|...|+++.+.. +.+...+..+...+...|++++|...|++.++
T Consensus 349 eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~ 427 (615)
T TIGR00990 349 EALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID 427 (615)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999887776 5578888899999999999999999988764 33577888888999999999999999999988
Q ss_pred CCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--
Q 048533 367 KKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYC-- 444 (591)
Q Consensus 367 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-- 444 (591)
.. +.+...+..+..++.+.|++++|...++...+.. +.+...++.+...+...|++++|...|++.++.....+..
T Consensus 428 l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~ 505 (615)
T TIGR00990 428 LD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYM 505 (615)
T ss_pred cC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccc
Confidence 74 3366778888899999999999999999988764 3467888999999999999999999999998754221111
Q ss_pred ----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 445 ----SYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGN 507 (591)
Q Consensus 445 ----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 507 (591)
.++.....+...|++++|.++++++.+.++. +...+..+...+...|++++|++.|++..+.
T Consensus 506 ~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 506 NVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 1122223344469999999999999887543 5667889999999999999999999998874
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=7.8e-21 Score=187.32 Aligned_cols=302 Identities=13% Similarity=0.080 Sum_probs=198.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHc
Q 048533 136 LVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVAN---IHLYNVLIHACCK 212 (591)
Q Consensus 136 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~ 212 (591)
.+..+...|++++|+..|+++.+.++. +..++..+...+...|+++.|..+++.+.+.+..++ ...+..+...+.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 345567788888888888888887654 667788888888888888888888888877532221 2456777788888
Q ss_pred cCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHH
Q 048533 213 SSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDI----VTYNSLIHGFCREGRMRE 288 (591)
Q Consensus 213 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~ 288 (591)
.|++++|..+|+++.... +.+..++..++..+...|++++|.+.++.+.+.+..+.. ..+..+...+...|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 888888888888887653 345667788888888888888888888888775433221 234455666667777777
Q ss_pred HHHHHHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 289 ARRLFRDIKGATPN-HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEK 367 (591)
Q Consensus 289 A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 367 (591)
|...|+++.+..|+ ...+..+...+.+.|++++|.++++++...+......++..+..+|...|++++|...++.+.+.
T Consensus 199 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 199 ARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777776654443 44555666667777777777777777665432222344556666666666666666666666654
Q ss_pred CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCH
Q 048533 368 KIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCK---AKEMDIAKELLFGMLDAGFSPSY 443 (591)
Q Consensus 368 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~ 443 (591)
.|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.+.++.|++
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 234444556666666666666666666666554 3555556555555443 34566666666666654444443
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=3.2e-19 Score=184.16 Aligned_cols=322 Identities=12% Similarity=0.014 Sum_probs=208.1
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccch
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHV 132 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (591)
+.|++++|+.+++..+...|. ...++..++..+...|++++|...++++...+ |.+...
T Consensus 54 ~~g~~~~A~~l~~~~l~~~p~---~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~------------------P~~~~a 112 (656)
T PRK15174 54 RKDETDVGLTLLSDRVLTAKN---GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN------------------VCQPED 112 (656)
T ss_pred hcCCcchhHHHhHHHHHhCCC---chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC------------------CCChHH
Confidence 447777777777777776665 56666666666677777777777777776644 444556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCK 212 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 212 (591)
+..++..+.+.|++++|+..|+++.+..+. +...+..+...+...|++++|...++.+....+.+ ...+..+ ..+..
T Consensus 113 ~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~ 189 (656)
T PRK15174 113 VLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLN 189 (656)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHH
Confidence 777777777777777777777777776543 56666777777777777777777777766654432 2233222 23566
Q ss_pred cCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----
Q 048533 213 SSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMRE---- 288 (591)
Q Consensus 213 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---- 288 (591)
.|++++|...++.+......++...+..+...+...|++++|...+++..+... .+...+..+...+...|++++
T Consensus 190 ~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~ 268 (656)
T PRK15174 190 KSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQ 268 (656)
T ss_pred cCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHH
Confidence 777777777777766553223333444455666677777777777777766532 245566667777777777764
Q ss_pred HHHHHHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 289 ARRLFRDIKGATPN-HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEK 367 (591)
Q Consensus 289 A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 367 (591)
|...|++.....|+ ...+..+...+...|++++|...+++..... +.+...+..+..++.+.|++++|...++.+.+.
T Consensus 269 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 269 AAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 67777776665554 4566667777777777777777777776653 223445556666677777777777777777664
Q ss_pred CCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048533 368 KIAPDN-VTCNTLINAYCKIGDTASAMKVKNRMLEA 402 (591)
Q Consensus 368 ~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 402 (591)
+ |+. ..+..+..++...|+.++|...|++..+.
T Consensus 348 ~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 348 K--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred C--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2 232 23333455666777777777777776665
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=1.1e-17 Score=172.94 Aligned_cols=440 Identities=13% Similarity=0.092 Sum_probs=256.9
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
+.+...-+....++|+++.|+..|+++.+.++..... ++ -++..+...|+.++|+..+++..
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~a-----------------v~-dll~l~~~~G~~~~A~~~~eka~ 95 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQ-----------------VD-DWLQIAGWAGRDQEVIDVYERYQ 95 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhh-----------------HH-HHHHHHHHcCCcHHHHHHHHHhc
Confidence 3344444445555555555555555555543221111 11 33334445555555555555555
Q ss_pred hCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCccc
Q 048533 158 VHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFT 237 (591)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 237 (591)
.... .+......+...+...|++++|+++|+++.+..+. +...+..++..+...++.++|++.++++... .|+...
T Consensus 96 ~p~n-~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~ 171 (822)
T PRK14574 96 SSMN-ISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQN 171 (822)
T ss_pred cCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHH
Confidence 2111 12222233344555555555555555555555443 3444444555555555555555555555544 233333
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc-CCCChhhH------HHHH
Q 048533 238 YNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKG-ATPNHVTY------TTLI 310 (591)
Q Consensus 238 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~------~~li 310 (591)
+..++..+...++..+|++.++++.+.. +-+...+..+..++.+.|-...|.++..+-++ ..+....+ ...+
T Consensus 172 ~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~v 250 (822)
T PRK14574 172 YMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQV 250 (822)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHH
Confidence 3333333333344444555555555542 11344445555555555555555555544332 11110000 0001
Q ss_pred HHH-----HhcCC---HHHHHHHHHHHHHC-CCCCCH-H----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHH
Q 048533 311 DGY-----CRAND---LEEALRLREVMAAK-GVYPGV-V----TYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTC 376 (591)
Q Consensus 311 ~~~-----~~~g~---~~~a~~~~~~~~~~-~~~p~~-~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 376 (591)
+.- ....+ .+.|+.-++.+... +..|.. . ...-.+.++...|+..++++.|+.+...+.+....+-
T Consensus 251 r~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~ 330 (822)
T PRK14574 251 RMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYAR 330 (822)
T ss_pred hhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHH
Confidence 000 01112 34455555555542 212321 1 1223445667788888999999888887766555677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------C
Q 048533 377 NTLINAYCKIGDTASAMKVKNRMLEAGL-----MLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGF-----------S 440 (591)
Q Consensus 377 ~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~ 440 (591)
..+.++|...+++++|..+|..+..... .++......|..++...+++++|..+++++.+... .
T Consensus 331 ~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 410 (822)
T PRK14574 331 RWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKE 410 (822)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCC
Confidence 8888888888999999999988866431 22344457788888889999999999998886321 1
Q ss_pred CC--H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC-HHHH
Q 048533 441 PS--Y-CSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGD-SVIY 516 (591)
Q Consensus 441 ~~--~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~ 516 (591)
|+ . ..+..++..+...|+..+|++.++++....+. |......+...+...|.+.+|.+.++..... .|+ ..+.
T Consensus 411 pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~ 487 (822)
T PRK14574 411 PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILE 487 (822)
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHH
Confidence 22 2 23445677788899999999999999887654 8889999999999999999999999777664 444 4677
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 517 TSLAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 517 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
...+.++...|++.+|..+.+.+.+..
T Consensus 488 ~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 488 RAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 788888999999999999999888853
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=7.1e-18 Score=178.05 Aligned_cols=406 Identities=12% Similarity=0.049 Sum_probs=312.8
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 129 NSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIH 208 (591)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 208 (591)
++....=.+.+....|+.++|++++.+...... .+...+..+..++...|++++|.++|++..+..+. +...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~-~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQ-LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 333444456678889999999999999987443 36667999999999999999999999999987554 5677778888
Q ss_pred HHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048533 209 ACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMRE 288 (591)
Q Consensus 209 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 288 (591)
++...|++++|...+++..... +.+.. +..+..++...|+.++|+..++++.+..+. +...+..+...+...|..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence 9999999999999999998873 44566 888999999999999999999999987433 55666778888889999999
Q ss_pred HHHHHHHhhcCCCCh------hhHHHHHHHHH-----hcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHH
Q 048533 289 ARRLFRDIKGATPNH------VTYTTLIDGYC-----RANDL---EEALRLREVMAAK-GVYPGVV-TY----NSILRKL 348 (591)
Q Consensus 289 A~~~~~~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~~~~~-~~~p~~~-~~----~~ll~~~ 348 (591)
|++.++.... .|+. ......+.... ..+++ ++|++.++.+.+. ...|+.. .+ ...+..+
T Consensus 169 Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 169 ALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence 9999988775 4432 11222233222 12234 7788888888854 2223221 11 1113455
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCH
Q 048533 349 CKEGRIRDANRLLNEMNEKKIA-PDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLML---DQFTYKALIHGFCKAKEM 424 (591)
Q Consensus 349 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~ 424 (591)
...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|...|+++....... .......+..++...|++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 6779999999999999987532 322 22335778999999999999999987754221 134566677788999999
Q ss_pred HHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048533 425 DIAKELLFGMLDAGF-----------SPS---YCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCK 490 (591)
Q Consensus 425 ~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 490 (591)
++|..+++.+..... .|+ ...+..+...+...|+.++|++.++++....+. +...+..+...+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 999999999987531 123 234566778888999999999999999987554 78899999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 491 KEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 491 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
.|++++|++.++++.+.. +.+...+...+..+.+.|++++|..+++++++..
T Consensus 406 ~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 406 RGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred cCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999999999999999863 3345777888889999999999999999999964
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=1.6e-17 Score=171.75 Aligned_cols=434 Identities=10% Similarity=0.013 Sum_probs=325.9
Q ss_pred cCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccc
Q 048533 52 NCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSH 131 (591)
Q Consensus 52 ~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (591)
.+.|+++.|++.|+.+.+..|. +.....-++.++...|+.++|+..+++..... +....
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~---~~~av~dll~l~~~~G~~~~A~~~~eka~~p~------------------n~~~~ 103 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPL---QSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM------------------NISSR 103 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCcc---chhhHHHHHHHHHHcCCcHHHHHHHHHhccCC------------------CCCHH
Confidence 4469999999999999998887 42222278888889999999999999987321 11122
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACC 211 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 211 (591)
.+..++..|...|++++|+++|+++.+..+. +...+..++..+...++.++|++.++.+.+.. |+...+..++..+.
T Consensus 104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~ 180 (822)
T PRK14574 104 GLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNR 180 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHH
Confidence 3333466899999999999999999999877 67888888999999999999999999998874 44555555555555
Q ss_pred ccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH------HHHHHHH-----
Q 048533 212 KSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTY------NSLIHGF----- 280 (591)
Q Consensus 212 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~------~~l~~~~----- 280 (591)
..++..+|++.++++...+ |.+...+..+..++.+.|-...|.++..+-... +.+...-+ ...++.-
T Consensus 181 ~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 181 ATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTR 258 (822)
T ss_pred hcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccc
Confidence 5677767999999999885 446778888999999999999998877653321 11111111 1111110
Q ss_pred HhcCCH---HHHHHHHHHhhc---CCCCh-hhH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 281 CREGRM---REARRLFRDIKG---ATPNH-VTY----TTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLC 349 (591)
Q Consensus 281 ~~~g~~---~~A~~~~~~~~~---~~~~~-~~~----~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 349 (591)
...+++ +.|+.-++.+.. ..|.. ..| .-.+-++...|++.++++.|+.+...+.+....+-..+..+|.
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 011233 334444444443 22322 222 2345677889999999999999999887656678899999999
Q ss_pred hcCCHHHHHHHHHHHHhCC-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-------------CCCH-HH
Q 048533 350 KEGRIRDANRLLNEMNEKK-----IAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGL-------------MLDQ-FT 410 (591)
Q Consensus 350 ~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~-~~ 410 (591)
..+++++|+.+++.+.... .+++......|.-++...+++++|..+++.+.+..+ .||- ..
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 9999999999999997653 123344457889999999999999999999987421 1222 33
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048533 411 YKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCK 490 (591)
Q Consensus 411 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 490 (591)
+..++..+.-.|++.+|++.++++.... +-|......+...+...|.+..|++.++.+....+. +..+....+.++..
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~ 496 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHh
Confidence 4556777889999999999999998765 568889999999999999999999999888776444 67788888999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHHH
Q 048533 491 KEKVDYAQRLFNLMQGNGILGDSVI 515 (591)
Q Consensus 491 ~g~~~~a~~~~~~~~~~~~~p~~~~ 515 (591)
.|++++|..+.+.+.+. .|+...
T Consensus 497 l~e~~~A~~~~~~l~~~--~Pe~~~ 519 (822)
T PRK14574 497 LQEWHQMELLTDDVISR--SPEDIP 519 (822)
T ss_pred hhhHHHHHHHHHHHHhh--CCCchh
Confidence 99999999999999885 444443
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=1.1e-18 Score=184.25 Aligned_cols=407 Identities=8% Similarity=-0.022 Sum_probs=229.8
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccch
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHV 132 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (591)
..|+.++|++.+..+....|. +..++..++.++.+.|++++|..+++++.... |.++..
T Consensus 27 ~~g~~~~A~~~~~~~~~~~~~---~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~------------------P~~~~a 85 (765)
T PRK10049 27 WAGQDAEVITVYNRYRVHMQL---PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE------------------PQNDDY 85 (765)
T ss_pred HcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCCHHH
Confidence 346666666666555432332 44445556666666666666666666655432 233444
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCK 212 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 212 (591)
...++.++...|++++|+..++++.+..+. +.. +..+..++...|+.+.|+..++++.+..+. +...+..+..++..
T Consensus 86 ~~~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~ 162 (765)
T PRK10049 86 QRGLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 555555556666666666666666555433 333 555555555566666666666666555443 34444445555555
Q ss_pred cCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HhcCCH-
Q 048533 213 SSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGF-----CREGRM- 286 (591)
Q Consensus 213 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~g~~- 286 (591)
.|..+.|++.++.... .|+. ..-+ .......++... ...+++
T Consensus 163 ~~~~e~Al~~l~~~~~---~p~~---~~~l--------------------------~~~~~~~~~r~~~~~~~~~~~r~~ 210 (765)
T PRK10049 163 NRLSAPALGAIDDANL---TPAE---KRDL--------------------------EADAAAELVRLSFMPTRSEKERYA 210 (765)
T ss_pred CCChHHHHHHHHhCCC---CHHH---HHHH--------------------------HHHHHHHHHHhhcccccChhHHHH
Confidence 5555555555554432 1110 0000 000001111111 111222
Q ss_pred --HHHHHHHHHhhc---CCCChh-hH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHH
Q 048533 287 --REARRLFRDIKG---ATPNHV-TY----TTLIDGYCRANDLEEALRLREVMAAKGVY-PGVVTYNSILRKLCKEGRIR 355 (591)
Q Consensus 287 --~~A~~~~~~~~~---~~~~~~-~~----~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~ 355 (591)
++|+..++.+.. ..|+.. .+ ...+..+...|++++|...|+.+.+.+.. |+. ....+...+...|+++
T Consensus 211 ~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e 289 (765)
T PRK10049 211 IADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPE 289 (765)
T ss_pred HHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcH
Confidence 555655555543 122211 11 11123344557777777777777665421 221 1122355666777777
Q ss_pred HHHHHHHHHHhCCCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHH
Q 048533 356 DANRLLNEMNEKKIAP---DNVTCNTLINAYCKIGDTASAMKVKNRMLEAGL-----------MLD---QFTYKALIHGF 418 (591)
Q Consensus 356 ~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~ 418 (591)
+|+..|+.+.+..... .......+..++...|++++|...++.+..... .|+ ...+..+...+
T Consensus 290 ~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l 369 (765)
T PRK10049 290 KAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVA 369 (765)
T ss_pred HHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHH
Confidence 7777777766542111 123445555566777777777777777665421 123 23455667778
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048533 419 CKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQ 498 (591)
Q Consensus 419 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 498 (591)
...|++++|..+++++.... +.+...+..+...+...|++++|++.++++.+..+. +...+..++..+...|++++|.
T Consensus 370 ~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~ 447 (765)
T PRK10049 370 KYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMD 447 (765)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHH
Confidence 88899999999999888754 445777888888888899999999999988887543 5667777777888889999999
Q ss_pred HHHHHHHhCCCCcCHHHHHHHH
Q 048533 499 RLFNLMQGNGILGDSVIYTSLA 520 (591)
Q Consensus 499 ~~~~~~~~~~~~p~~~~~~~l~ 520 (591)
.+++++++. .|+......+-
T Consensus 448 ~~~~~ll~~--~Pd~~~~~~~~ 467 (765)
T PRK10049 448 VLTDDVVAR--EPQDPGVQRLA 467 (765)
T ss_pred HHHHHHHHh--CCCCHHHHHHH
Confidence 999999875 45554333333
No 27
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.85 E-value=3.2e-15 Score=141.60 Aligned_cols=481 Identities=9% Similarity=0.004 Sum_probs=357.4
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHH
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLS 134 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (591)
.+++.|.-++..+.+-.|. +.+.+. +|++..-|+.|..++.+..+ ..|.++.++.
T Consensus 390 E~~~darilL~rAveccp~---s~dLwl----AlarLetYenAkkvLNkaRe------------------~iptd~~IWi 444 (913)
T KOG0495|consen 390 EEPEDARILLERAVECCPQ---SMDLWL----ALARLETYENAKKVLNKARE------------------IIPTDREIWI 444 (913)
T ss_pred cChHHHHHHHHHHHHhccc---hHHHHH----HHHHHHHHHHHHHHHHHHHh------------------hCCCChhHHH
Confidence 3455566666666665554 444333 34445556666666666655 2355666777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHh----hCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 048533 135 WLVIFYANLKMTQDGLQVFDQMR----VHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVAN--IHLYNVLIH 208 (591)
Q Consensus 135 ~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~ 208 (591)
.....--.+|+.+...+++.+.+ ..|+..+...|..=...|-..|..-.+..+....+..|+.-. ..+|..-..
T Consensus 445 taa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~ 524 (913)
T KOG0495|consen 445 TAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQ 524 (913)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHH
Confidence 77777778888888888877643 457778888888888888888888888888888887776532 357777788
Q ss_pred HHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048533 209 ACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMRE 288 (591)
Q Consensus 209 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 288 (591)
.|.+.+.++-|..+|...++- .+-+...|......--..|..++...+|++.... ++-....|......+-..|++..
T Consensus 525 ~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ 602 (913)
T KOG0495|consen 525 SCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPA 602 (913)
T ss_pred HHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHH
Confidence 888888888888888887765 2446677887777777788888888888888876 33345566666777778899999
Q ss_pred HHHHHHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 289 ARRLFRDIKGATPN-HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEK 367 (591)
Q Consensus 289 A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 367 (591)
|..++..+-+..|+ ...|-..+.....+.+++.|..+|.+.... .|+...|..-+...--.+..++|.+++++.++.
T Consensus 603 ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 603 ARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999888775554 667888888888889999999999888765 466666666666666678889999999888876
Q ss_pred CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048533 368 KIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYS 447 (591)
Q Consensus 368 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 447 (591)
++--...|..+.+.+-+.++.+.|.+.|..-.+. ++..+..|..+...--+.|.+-+|..++++..-.+ +.+...|-
T Consensus 681 -fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwl 757 (913)
T KOG0495|consen 681 -FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWL 757 (913)
T ss_pred -CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHH
Confidence 3334467788888888888999888888765544 33456667777777778888999999999888766 45677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcC
Q 048533 448 WLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAG 527 (591)
Q Consensus 448 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 527 (591)
..++.-.+.|+.+.|..+..++++. ++.+...|..-|....+.++-......+++. .-|+.....+...+....
T Consensus 758 e~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~ 831 (913)
T KOG0495|consen 758 ESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEK 831 (913)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHH
Confidence 8888888999999999998888875 4457777888887777766655555444443 447888888999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcch--hHHHHHHHHHHh
Q 048533 528 EPKACSDILDDMYRRRLMITLKIYRSFSASYAKDN--EILDLFWSHVVD 574 (591)
Q Consensus 528 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~~~~~~~~~ 574 (591)
+++.|.+.|++.++.+.. ...+|..+...+.++| +..+...++|..
T Consensus 832 k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 832 KIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 999999999999998643 4668888889999988 444456666643
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=1.1e-15 Score=137.57 Aligned_cols=455 Identities=16% Similarity=0.184 Sum_probs=309.8
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchH---HHHHHH--HH-------hcCChHHH
Q 048533 82 WTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL---SWLVIF--YA-------NLKMTQDG 149 (591)
Q Consensus 82 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~--~~-------~~~~~~~A 149 (591)
++++. +..+|..+++.=+|+.|...|....+.+...++++..........| .+.+.. +. +.|.+ |
T Consensus 120 ~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v--A 196 (625)
T KOG4422|consen 120 NNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV--A 196 (625)
T ss_pred hHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH--H
Confidence 34443 4578999999999999999999999998888887654333222221 111111 00 11111 2
Q ss_pred HHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhC
Q 048533 150 LQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFK 229 (591)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 229 (591)
. ++-+.. ++ +..++..+|.++++-...++|.++|++......+.+..+||.+|.+-.-..+ .+++.+|...
T Consensus 197 d-L~~E~~---PK-T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisq 267 (625)
T KOG4422|consen 197 D-LLFETL---PK-TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQ 267 (625)
T ss_pred H-HHHhhc---CC-CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHh
Confidence 2 222222 22 6679999999999999999999999999888888899999999976554332 7899999999
Q ss_pred CCCcCcccHHHHHHHHHhcCChhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHhh----c--
Q 048533 230 DVRADLFTYNTLIALYCKKGMHYE----ALAVQDRMEREGISPDIVTYNSLIHGFCREGRMRE-ARRLFRDIK----G-- 298 (591)
Q Consensus 230 ~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~----~-- 298 (591)
...||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++. +
T Consensus 268 km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~ 347 (625)
T KOG4422|consen 268 KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKT 347 (625)
T ss_pred hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCc
Confidence 999999999999999999998875 56788899999999999999999999999888744 555555553 2
Q ss_pred ---CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 299 ---ATP-NHVTYTTLIDGYCRANDLEEALRLREVMAAKG----VYPG---VVTYNSILRKLCKEGRIRDANRLLNEMNEK 367 (591)
Q Consensus 299 ---~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 367 (591)
..| |..-|...+..|.+..+.+-|.++...+.... +.|+ ..-|..+....|+....+.....|+.|.-.
T Consensus 348 fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~ 427 (625)
T KOG4422|consen 348 FKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS 427 (625)
T ss_pred ccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 223 34557778888888899888888876655431 2233 234677788889999999999999999988
Q ss_pred CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048533 368 KIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYS 447 (591)
Q Consensus 368 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 447 (591)
-.-|+..+...++++....|.++-..++|.++...|.......- ++++..+.+....|+...-.
T Consensus 428 ~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~----------------eeil~~L~~~k~hp~tp~r~ 491 (625)
T KOG4422|consen 428 AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR----------------EEILMLLARDKLHPLTPERE 491 (625)
T ss_pred eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH----------------HHHHHHHhcCCCCCCChHHH
Confidence 88889999999999999999999999999998887643322222 23333343333333322111
Q ss_pred HHHHHHHhc-CCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCcCHHHH---HHHHH
Q 048533 448 WLVDGYCNK-NNE-EALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNG-ILGDSVIY---TSLAY 521 (591)
Q Consensus 448 ~l~~~~~~~-g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~---~~l~~ 521 (591)
.+-....+. -++ +.....-.++.+. ...+...+.+.-.+.+.|..++|.+++..+..++ -.|..... .-+++
T Consensus 492 Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d 569 (625)
T KOG4422|consen 492 QLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMD 569 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHH
Confidence 111111110 111 1122222333333 3355666677777788888888888888885432 22233333 35666
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcchhHHH
Q 048533 522 AYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNEILD 566 (591)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 566 (591)
.-.+.+++..|...++-|.......-...-+.+...|.-+.+..+
T Consensus 570 ~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~ 614 (625)
T KOG4422|consen 570 SAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQEQKE 614 (625)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHH
Confidence 666777888888888888776554333355566666665544433
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.81 E-value=2.4e-14 Score=141.17 Aligned_cols=487 Identities=14% Similarity=0.096 Sum_probs=341.1
Q ss_pred CCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchH
Q 048533 54 CHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL 133 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (591)
+|+.+.|..++..++++.|. ...+|.+|+.+|-+.|+.+++....-.+...+ |.+...|
T Consensus 152 rg~~eeA~~i~~EvIkqdp~---~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~------------------p~d~e~W 210 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPR---NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN------------------PKDYELW 210 (895)
T ss_pred hCCHHHHHHHHHHHHHhCcc---chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC------------------CCChHHH
Confidence 49999999999999998887 88999999999999999999988876665544 4445778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH----HHH
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVL----IHA 209 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----l~~ 209 (591)
..+.....+.|++.+|.-.|.++++.++. +....-.-+..|-+.|+...|...|.++.+..++.|..-+..+ +..
T Consensus 211 ~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 211 KRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY 289 (895)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Confidence 88999999999999999999999999865 6666677778899999999999999999998664444444443 455
Q ss_pred HHccCChhhHHHHHHHHhhCC-CCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-------------------
Q 048533 210 CCKSSDVDKVEKLLCEMEFKD-VRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPD------------------- 269 (591)
Q Consensus 210 ~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~------------------- 269 (591)
+...++-+.|.+.++.....+ -..+...++.++..+.+...++.+......+......+|
T Consensus 290 ~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~ 369 (895)
T KOG2076|consen 290 FITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCE 369 (895)
T ss_pred HHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccccc
Confidence 667788899999988877632 234566788999999999999999998888776222222
Q ss_pred --------HHH-HHHHHHHHHhcCCHHHHHHHHHHhhc--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 048533 270 --------IVT-YNSLIHGFCREGRMREARRLFRDIKG--ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGV 338 (591)
Q Consensus 270 --------~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 338 (591)
..+ ...+.-...+.++..+++..+-.... ...+...|.-+..+|...|++.+|+++|..+......-+.
T Consensus 370 ~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~ 449 (895)
T KOG2076|consen 370 VGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNA 449 (895)
T ss_pred CCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccch
Confidence 222 11122222334455555555544444 2334667888999999999999999999999987655577
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--------CCCCCHHH
Q 048533 339 VTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEA--------GLMLDQFT 410 (591)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~ 410 (591)
..|..+..+|...|..++|.+.|+..+... +-+...-..|...+.+.|+.++|.+++..+..- +..|+...
T Consensus 450 ~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri 528 (895)
T KOG2076|consen 450 FVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRI 528 (895)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHH
Confidence 889999999999999999999999998863 235556667788899999999999999886522 23344445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCC-----------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 411 YKALIHGFCKAKEMDIAKELLFGMLDAG-----FSP-----------------SYCSYSWLVDGYCNKNNEEALLKLLDE 468 (591)
Q Consensus 411 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~-----------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 468 (591)
.......+.+.|+.++-..+...|+... +-| .......+..+-.+.++.....+-...
T Consensus 529 ~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d 608 (895)
T KOG2076|consen 529 LAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSD 608 (895)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccc
Confidence 5556667788888887666555554311 111 111122223333333332211111111
Q ss_pred H------HHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CcCH---HHHHHHHHHHHHcCChhHHHHH
Q 048533 469 F------VSRGLCVD--VSVYRALIRRFCKKEKVDYAQRLFNLMQGNGI--LGDS---VIYTSLAYAYWRAGEPKACSDI 535 (591)
Q Consensus 469 ~------~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~~---~~~~~l~~~~~~~g~~~~A~~~ 535 (591)
- ...++..+ -..+..++.++.+.+++++|..+...+..... .++. ..-...+.+....+++..|...
T Consensus 609 ~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~ 688 (895)
T KOG2076|consen 609 GTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSY 688 (895)
T ss_pred hhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 1 11122111 13456778888999999999999998886422 1121 2234566778889999999999
Q ss_pred HHHHHHC-CCCCC---HHHHHHHHHhhhcchh
Q 048533 536 LDDMYRR-RLMIT---LKIYRSFSASYAKDNE 563 (591)
Q Consensus 536 ~~~~~~~-~~~~~---~~~~~~li~~~~~~~~ 563 (591)
++.|... +...+ ...||...+.+.+.++
T Consensus 689 lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q 720 (895)
T KOG2076|consen 689 LRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQ 720 (895)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999876 22222 3356655566666555
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=4.4e-16 Score=141.09 Aligned_cols=458 Identities=12% Similarity=0.082 Sum_probs=271.0
Q ss_pred HHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCC
Q 048533 47 LLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDP 126 (591)
Q Consensus 47 l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (591)
|...|..+.-..+|+..|+-..+. .-++.......+++.++.+...|.+|+..|+-++..-+....
T Consensus 207 laqqy~~ndm~~ealntyeiivkn-kmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink------------- 272 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKN-KMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINK------------- 272 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcc-cccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccch-------------
Confidence 345555556677888888877663 333446666678899999999999999999888775443221
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-------
Q 048533 127 DGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVAN------- 199 (591)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------- 199 (591)
+....+++.+...|.+.|++++|+..|+...+. .|+..+-..|+-++..-|+-++..+.|.+|...-..||
T Consensus 273 ~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~ 350 (840)
T KOG2003|consen 273 DMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKE 350 (840)
T ss_pred hhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCC
Confidence 123345666667799999999999999998886 46766655556666667899999999999876532222
Q ss_pred -----HHHHHHHH-----HHHHccCC--hhhHHHHHHHHhhCCCCcCccc---H------------------HHHHHHHH
Q 048533 200 -----IHLYNVLI-----HACCKSSD--VDKVEKLLCEMEFKDVRADLFT---Y------------------NTLIALYC 246 (591)
Q Consensus 200 -----~~~~~~ll-----~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~---~------------------~~li~~~~ 246 (591)
....+.-+ +-..+.++ -++++-.--+++.--+.||-.. | ..-...+.
T Consensus 351 ~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~l 430 (840)
T KOG2003|consen 351 KDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELL 430 (840)
T ss_pred cCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Confidence 22222222 22222211 1222222222221111222110 0 01122355
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHhhcC-CCChhhHHHHHHHHHhcCCHHHHH
Q 048533 247 KKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCR--EGRMREARRLFRDIKGA-TPNHVTYTTLIDGYCRANDLEEAL 323 (591)
Q Consensus 247 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~ 323 (591)
++|+++.|++++.-+.+..-+.....-+.|...+.- ..++..|..+-+..... .-+......-.......|++++|.
T Consensus 431 k~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~ 510 (840)
T KOG2003|consen 431 KNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAA 510 (840)
T ss_pred hccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHH
Confidence 677777777777766654333222233333322222 23566666666555431 122222222223334467777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 048533 324 RLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAG 403 (591)
Q Consensus 324 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 403 (591)
+.|++....+.......|+ +.-.+-..|++++|++.|-++... +..+...+..+.+.|-...+...|++++.+....
T Consensus 511 ~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl- 587 (840)
T KOG2003|consen 511 EFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL- 587 (840)
T ss_pred HHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-
Confidence 7777776653221222222 222345667777777777655332 1225556666677777777777777777665544
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 404 LMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRA 483 (591)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 483 (591)
++.|+...+.|...|-+.|+-..|.+.+-+--+. ++-+..+..+|...|....-+++++.+|+++.- +.|+..-|..
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwql 664 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQL 664 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHH
Confidence 4556777777777777777777777666554432 355666777777777777777777777776643 4567777776
Q ss_pred HHHHH-HhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcC
Q 048533 484 LIRRF-CKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAG 527 (591)
Q Consensus 484 l~~~~-~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 527 (591)
++..| .+.|++.+|..+|+....+ ++.|...+..|++.+...|
T Consensus 665 miasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 66544 4567777777777777665 5666777777777776665
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.6e-14 Score=131.94 Aligned_cols=429 Identities=10% Similarity=0.100 Sum_probs=327.6
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 048533 137 VIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDV 216 (591)
Q Consensus 137 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 216 (591)
++--..++++..|..+|++++..+.. +...|...+..-.+++.+..|..++++.+..-+..|. .|-..+..--..|++
T Consensus 80 aqwEesq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi 157 (677)
T KOG1915|consen 80 AQWEESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNI 157 (677)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhccc
Confidence 33344578889999999999998765 8889999999999999999999999999986444333 444556666778999
Q ss_pred hhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048533 217 DKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDI 296 (591)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 296 (591)
..|.++|++...- .|+..+|.+.|..-.+-+..+.|..+|++..-- .|++.+|......-.+.|....|..+|...
T Consensus 158 ~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 158 AGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred HHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 9999999998764 799999999999999999999999999999864 799999999999999999999999999988
Q ss_pred hcCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHH--------H
Q 048533 297 KGATP----NHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPG---VVTYNSILRKLCKEGRIRDANRL--------L 361 (591)
Q Consensus 297 ~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~--------~ 361 (591)
.+.-- +...+.+....-.++..++.|.-+|+-..+. -|. ...|......--+.|+....... |
T Consensus 234 ie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 234 IEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 75222 2334555555556678899999999988876 233 23444444444455654433332 3
Q ss_pred HHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHH---HhcCCHHHHHHHHH
Q 048533 362 NEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQF------TYKALIHGF---CKAKEMDIAKELLF 432 (591)
Q Consensus 362 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~---~~~~~~~~a~~~~~ 432 (591)
+.+...+ +-|-.+|--.++.....|+.+...++|++++..-++.... .|.-+=.++ ....+.+.+.++++
T Consensus 312 E~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 312 EKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4444443 4477889999999999999999999999998763322221 122221222 35789999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048533 433 GMLDAGFSPSYCSYSWLVDGY----CNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNG 508 (591)
Q Consensus 433 ~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 508 (591)
..++. ++....||..+--.| .++.++..|.+++..++ |..|...+|...|..-.+.++++.+++++++.++.+
T Consensus 391 ~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 391 ACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 99883 344556665544333 46789999999999887 567889999999999999999999999999999974
Q ss_pred CCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHhhhcchhHHHHHHHHHHhcCCCChHHHHHHH
Q 048533 509 ILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRL-MITLKIYRSFSASYAKDNEILDLFWSHVVDRGLMSKHIFKEMQ 587 (591)
Q Consensus 509 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (591)
+.|..+|......-...|+.+.|..+|+-++.... ......|.+.|+.=...|++.+ ++.+|+++.
T Consensus 468 -Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ek------------aR~LYerlL 534 (677)
T KOG1915|consen 468 -PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEK------------ARALYERLL 534 (677)
T ss_pred -hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHH------------HHHHHHHHH
Confidence 33679999999999999999999999999998732 2224467788887777888777 566666655
Q ss_pred hhc
Q 048533 588 LRN 590 (591)
Q Consensus 588 ~~~ 590 (591)
+++
T Consensus 535 ~rt 537 (677)
T KOG1915|consen 535 DRT 537 (677)
T ss_pred Hhc
Confidence 543
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=5.6e-16 Score=140.47 Aligned_cols=425 Identities=13% Similarity=0.096 Sum_probs=290.7
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----HH
Q 048533 129 NSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHAC-TVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIH----LY 203 (591)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~ 203 (591)
+..++..|++-|..+.+..+|+..|+.+.+...-|+.-.+ ..+.+.+.+.+.+.+|++.|+..+..-+..+.. ..
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 4456667788888899999999999998887766665443 234567778888999999998877654333333 34
Q ss_pred HHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC------------CHH
Q 048533 204 NVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISP------------DIV 271 (591)
Q Consensus 204 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p------------~~~ 271 (591)
+.+.-.+.+.|+++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|.+|+.....| +..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 44445577889999999999987765 4676666666667777888899999999887643222 222
Q ss_pred HHHHHH-----HHHHhcCCHHHHHHHHHH---hhc--CCCChhh---HH------------------HHHHHHHhcCCHH
Q 048533 272 TYNSLI-----HGFCREGRMREARRLFRD---IKG--ATPNHVT---YT------------------TLIDGYCRANDLE 320 (591)
Q Consensus 272 ~~~~l~-----~~~~~~g~~~~A~~~~~~---~~~--~~~~~~~---~~------------------~li~~~~~~g~~~ 320 (591)
..+..+ .-..+.+. ..|.+..-. +.. +.|+... |. .-...|.+.|+++
T Consensus 358 ll~eai~nd~lk~~ek~~k-a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENK-ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred HHHHHHhhHHHHHHHHhhh-hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 222222 11222111 122222211 111 2232211 10 1133477888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHH------------------------------------HHHHHhcCCHHHHHHHHHHH
Q 048533 321 EALRLREVMAAKGVYPGVVTYNSI------------------------------------LRKLCKEGRIRDANRLLNEM 364 (591)
Q Consensus 321 ~a~~~~~~~~~~~~~p~~~~~~~l------------------------------------l~~~~~~~~~~~a~~~~~~~ 364 (591)
.|.++++-..+.+-+.-...-+.+ .......|++++|.+.|++.
T Consensus 437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 888887776654322111111111 01112357889999999988
Q ss_pred HhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 048533 365 NEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYC 444 (591)
Q Consensus 365 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 444 (591)
+...-. -...+..+.-.+-..|++++|++.|-++... +..+..+...+...|....+...|.+++.+.... ++.|+.
T Consensus 517 l~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ 593 (840)
T KOG2003|consen 517 LNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPA 593 (840)
T ss_pred HcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHH
Confidence 876222 1122223334567789999999999877543 1346777778888888899999999998877653 567789
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH-
Q 048533 445 SYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAY- 523 (591)
Q Consensus 445 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~- 523 (591)
+++.|...|-+.|+-..|.+.+-.--.. ++-+..+..-|..-|....-+++++.+|++..- +.|+..-|..++..|
T Consensus 594 ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 594 ILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCF 670 (840)
T ss_pred HHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHH
Confidence 9999999999999999998876554443 455788888888888888899999999999875 689999998876655
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcchh
Q 048533 524 WRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNE 563 (591)
Q Consensus 524 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 563 (591)
.+.|+++.|..+|++.-++ ++-|..++..|++.++..|-
T Consensus 671 rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 5789999999999999887 66689999999999988774
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.78 E-value=2.6e-13 Score=128.87 Aligned_cols=473 Identities=12% Similarity=0.026 Sum_probs=372.8
Q ss_pred CCChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHH
Q 048533 37 SLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVL 116 (591)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 116 (591)
-|++-.+--.|.++ ..|+.|-.++.++.+..|. +..+|.+-+..=-.+|+.+....++.+....
T Consensus 406 cp~s~dLwlAlarL----etYenAkkvLNkaRe~ipt---d~~IWitaa~LEE~ngn~~mv~kii~rgl~~--------- 469 (913)
T KOG0495|consen 406 CPQSMDLWLALARL----ETYENAKKVLNKAREIIPT---DREIWITAAKLEEANGNVDMVEKIIDRGLSE--------- 469 (913)
T ss_pred ccchHHHHHHHHHH----HHHHHHHHHHHHHHhhCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHH---------
Confidence 45555554555555 4588999999999998887 7777777788778889888877777654331
Q ss_pred HHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCcc--CHHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 117 NALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMP--HLHACTVLLNSLAKDRLTDMVWKVYKKMVQL 194 (591)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 194 (591)
+.. .+...+.+-+..-+..+-..|.+--+..+....+.-|+.- ...+|..-...|.+.+.++-|..+|...++.
T Consensus 470 --L~~--ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv 545 (913)
T KOG0495|consen 470 --LQA--NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV 545 (913)
T ss_pred --Hhh--cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh
Confidence 000 0122334445555667777888888888888887776642 3458999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 048533 195 GVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYN 274 (591)
Q Consensus 195 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 274 (591)
-+. +...|......--..|..+....++++.... ++.....|......+...|+...|..++....+.... +...|.
T Consensus 546 fp~-k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwl 622 (913)
T KOG0495|consen 546 FPC-KKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWL 622 (913)
T ss_pred ccc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHH
Confidence 544 6778888777777789999999999998876 4566777888888888999999999999999887544 667888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCC
Q 048533 275 SLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGV-VTYNSILRKLCKEGR 353 (591)
Q Consensus 275 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~ 353 (591)
..+.......+++.|..+|.+.....|+...|..-+....-.+..++|.+++++..+. -|+- ..|-.+...+-+.++
T Consensus 623 aavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ 700 (913)
T KOG0495|consen 623 AAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMEN 700 (913)
T ss_pred HHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHH
Confidence 8889999999999999999999998899999888887777789999999999999886 4443 456666777888899
Q ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 354 IRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFG 433 (591)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 433 (591)
++.|...|..-.+. ++-..-.|..|...--+.|.+-+|..++++..-.+++ +...|...++.-.+.|+.+.|..++.+
T Consensus 701 ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 701 IEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999888776654 4556678888888888999999999999999887644 788999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH
Q 048533 434 MLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDS 513 (591)
Q Consensus 434 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 513 (591)
.++.. +.+...|..-|....+.++-......+++ +.-|+.+...+...+.....+++|++.|.+..+.+ +.+.
T Consensus 779 ALQec-p~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~G 851 (913)
T KOG0495|consen 779 ALQEC-PSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNG 851 (913)
T ss_pred HHHhC-CccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-Cccc
Confidence 98764 34455666666666666664444433332 23478888888888999999999999999999863 2245
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 514 VIYTSLAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 514 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
.+|.-+...+.+.|.-++-.+++.......
T Consensus 852 D~wa~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 852 DAWAWFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 899999999999998888888888887753
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.78 E-value=5.7e-14 Score=138.51 Aligned_cols=487 Identities=11% Similarity=0.077 Sum_probs=318.5
Q ss_pred HHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHH
Q 048533 41 TAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALV 120 (591)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 120 (591)
..-...|+.+|..+|+.++|+.++--|.+.+|+ +..-|..++....++|++++|.-.|.++++.+|..+.
T Consensus 173 ~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~---d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~------- 242 (895)
T KOG2076|consen 173 PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK---DYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWE------- 242 (895)
T ss_pred hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchH-------
Confidence 334567899999999999999999999888887 6677888999999999999999999999998765543
Q ss_pred hhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhH----HHHHHHHHhcCChhHHHHHHHHHHHCC-
Q 048533 121 KIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHAC----TVLLNSLAKDRLTDMVWKVYKKMVQLG- 195 (591)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~- 195 (591)
.+.--...|-+.|+...|..-|.++....++.+..-+ ..+++.+...++-+.|++.++.....+
T Consensus 243 -----------~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 243 -----------LIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred -----------HHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 3444566799999999999999999998764443333 344566677787899999998887632
Q ss_pred CCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCC---------------------------cCcccHHHHHHHHHhc
Q 048533 196 VVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVR---------------------------ADLFTYNTLIALYCKK 248 (591)
Q Consensus 196 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---------------------------~~~~~~~~li~~~~~~ 248 (591)
-..+...++.++..+.+...++.|......+..+... ++... -.++-++.+.
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L 390 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHL 390 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcc
Confidence 2235567888899999999999998887777652111 12222 1233344555
Q ss_pred CChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC--ChhhHHHHHHHHHhcCCHHHHHH
Q 048533 249 GMHYEALAVQDRMEREGIS--PDIVTYNSLIHGFCREGRMREARRLFRDIKGATP--NHVTYTTLIDGYCRANDLEEALR 324 (591)
Q Consensus 249 g~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~ 324 (591)
+..+....+...+.+..+. -+...|..+..++...|++.+|..+|..+...++ +...|-.+..+|...|..++|.+
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 5555555566666666533 3456788889999999999999999999886444 35688889999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------CCCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 048533 325 LREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNE--------KKIAPDNVTCNTLINAYCKIGDTASAMKVK 396 (591)
Q Consensus 325 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 396 (591)
.|+...... +.+...-..|-..+.+.|+.++|.+.+..+.. .+..|+..........+.+.|+.++-..+-
T Consensus 471 ~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~ 549 (895)
T KOG2076|consen 471 FYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTA 549 (895)
T ss_pred HHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999988763 22445556677778889999999999887542 223444555555566666777766644444
Q ss_pred HHHHHCC-----CCC--------------------------------------------------------CH----HHH
Q 048533 397 NRMLEAG-----LML--------------------------------------------------------DQ----FTY 411 (591)
Q Consensus 397 ~~~~~~~-----~~~--------------------------------------------------------~~----~~~ 411 (591)
..|+... +-| +. ..+
T Consensus 550 ~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~ 629 (895)
T KOG2076|consen 550 STLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELF 629 (895)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHH
Confidence 3332210 000 00 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC---CCHHHHH
Q 048533 412 KALIHGFCKAKEMDIAKELLFGMLDAGF--SPSY---CSYSWLVDGYCNKNNEEALLKLLDEFVSR-GLC---VDVSVYR 482 (591)
Q Consensus 412 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~---~~~~~~~ 482 (591)
..++..+++.+++++|..+...+.+... .++. ..-...+.+....+++..|...++.+... +.. --...|+
T Consensus 630 ~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n 709 (895)
T KOG2076|consen 630 RELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWN 709 (895)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 3445566677777777777776665321 1111 11223345556677777777777777654 111 1234455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 048533 483 ALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYR 552 (591)
Q Consensus 483 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 552 (591)
...+.+.+.++-.--.+++..+......-++.......+-....+.+..|.+.+-++... .||.+..+
T Consensus 710 ~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~pd~Pl~n 777 (895)
T KOG2076|consen 710 LDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NPDSPLIN 777 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CCCCcHHH
Confidence 455555555544444444444443322222333334444556667777888866666553 35544433
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=6.3e-14 Score=126.47 Aligned_cols=456 Identities=12% Similarity=0.109 Sum_probs=306.5
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHH--HHHcCCCch-HHHHHHHHHHHcCCCCchHHH-HHHHhh-cCCCCCc
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIH--ILTKNKHFK-SAQNMLEKIALRDFLSTPSVL-NALVKI-HDDPDGN 129 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~--~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~ 129 (591)
+....++-+|+.+... +.+.+..+...+.. .|..+.+.. --++.|-.|.+.+-.+....- .++..+ .+..|.+
T Consensus 129 ~EvKDs~ilY~~m~~e--~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT 206 (625)
T KOG4422|consen 129 REVKDSCILYERMRSE--NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKT 206 (625)
T ss_pred cccchhHHHHHHHHhc--CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCC
Confidence 7788899999998754 33456665554433 333333333 335556556554433322111 122222 1345778
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 130 SHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHA 209 (591)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 209 (591)
...+..++.+.++-...+.|.++|.+......+.+..+||.+|.+-.-.. ..++..+|....+.||..|+|+++.+
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c 282 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSC 282 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHH
Confidence 89999999999999999999999999999888889999999998765433 37899999999999999999999999
Q ss_pred HHccCChhhH----HHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhH-HHHHHHHHHHC----CCC---C-CHHHHHHH
Q 048533 210 CCKSSDVDKV----EKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYE-ALAVQDRMERE----GIS---P-DIVTYNSL 276 (591)
Q Consensus 210 ~~~~g~~~~a----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~----~~~---p-~~~~~~~l 276 (591)
..+.|+++.| .+++.+|++.|+.|+..+|..+|..+++.++..+ +..++.++... .++ | |...|...
T Consensus 283 ~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~A 362 (625)
T KOG4422|consen 283 AAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSA 362 (625)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHH
Confidence 9999988764 5778889999999999999999999999888755 44444544432 222 2 34566777
Q ss_pred HHHHHhcCCHHHHHHHHHHhhc------CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 277 IHGFCREGRMREARRLFRDIKG------ATPN---HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRK 347 (591)
Q Consensus 277 ~~~~~~~g~~~~A~~~~~~~~~------~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 347 (591)
+..|.+..+.+-|.++..-+.. ..|+ ..-|..+....|.....+....+|+.|.-.-.-|+..+...++++
T Consensus 363 M~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA 442 (625)
T KOG4422|consen 363 MSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRA 442 (625)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHH
Confidence 8888899999988888776653 3343 234667778888899999999999999988788899999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCH
Q 048533 348 LCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQF---TYKALIHGFCKAKEM 424 (591)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~ 424 (591)
....+.++-.-+++.++...|.......-. +++..+.+....|+.. -+.....-++. ++
T Consensus 443 ~~v~~~~e~ipRiw~D~~~~ght~r~~l~e----------------eil~~L~~~k~hp~tp~r~Ql~~~~ak~aa--d~ 504 (625)
T KOG4422|consen 443 LDVANRLEVIPRIWKDSKEYGHTFRSDLRE----------------EILMLLARDKLHPLTPEREQLQVAFAKCAA--DI 504 (625)
T ss_pred HhhcCcchhHHHHHHHHHHhhhhhhHHHHH----------------HHHHHHhcCCCCCCChHHHHHHHHHHHHHH--HH
Confidence 999999999999999998876443333222 2333333333333211 22222211110 11
Q ss_pred HH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048533 425 DI-AKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRG----LCVDVSVYRALIRRFCKKEKVDYAQR 499 (591)
Q Consensus 425 ~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~ 499 (591)
.+ ....-.++....+ .....+.+.-.+.+.|+.++|.+++..+.+.+ ..|.......+++.......+..|..
T Consensus 505 ~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~ 582 (625)
T KOG4422|consen 505 KEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIE 582 (625)
T ss_pred HHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHH
Confidence 11 1222233333333 34456666667778888888888888875443 12333344466666677788888888
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHH
Q 048533 500 LFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDIL 536 (591)
Q Consensus 500 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 536 (591)
+++.|...+.+.-...-+.+...|.-+....+|+.-+
T Consensus 583 ~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls~l 619 (625)
T KOG4422|consen 583 VLQLASAFNLPICEGLAQRIMEDFAINQEQKEALSNL 619 (625)
T ss_pred HHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHhhh
Confidence 8888877654433334455566665555444554433
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=8.8e-13 Score=120.74 Aligned_cols=457 Identities=11% Similarity=0.032 Sum_probs=319.7
Q ss_pred CCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchH
Q 048533 54 CHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL 133 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (591)
+++...|..+|+.|+..... +...+..-+..=.++.+...|..+++++...-|..+ +.+
T Consensus 86 q~e~~RARSv~ERALdvd~r---~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd------------------qlW 144 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYR---NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD------------------QLW 144 (677)
T ss_pred HHHHHHHHHHHHHHHhcccc---cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH------------------HHH
Confidence 46677888888888764322 455566677778888888888888888776433222 233
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKS 213 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 213 (591)
..-+-+--..|++..|.++|++-.+- .|+..+|++.++.-.+.+.++.|..+|++.+-. .|++..|.-..+.-.+.
T Consensus 145 yKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~ 220 (677)
T KOG1915|consen 145 YKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKH 220 (677)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhc
Confidence 33344445578999999999887764 688899999999999999999999999988764 47888888888888889
Q ss_pred CChhhHHHHHHHHhhC-CC-CcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH---
Q 048533 214 SDVDKVEKLLCEMEFK-DV-RADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPD-IVTYNSLIHGFCREGRMR--- 287 (591)
Q Consensus 214 g~~~~a~~~~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~--- 287 (591)
|+...+..+|+..... |- ..+...+.+....-.++..++.|.-+|.-.+..-.... ...|......--+-|+..
T Consensus 221 g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIE 300 (677)
T KOG1915|consen 221 GNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIE 300 (677)
T ss_pred CcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhH
Confidence 9999999998887653 10 11122344444444456778888888887776522211 234444444434445533
Q ss_pred HHHHHHHH-----hh-cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHH-----H---HHHHHhc
Q 048533 288 EARRLFRD-----IK-GATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVV--TYNS-----I---LRKLCKE 351 (591)
Q Consensus 288 ~A~~~~~~-----~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~-----l---l~~~~~~ 351 (591)
.++--=++ .. ..+-|-.+|--.++.-...|+.+...++|+..... ++|-.. .|.. + +-.-...
T Consensus 301 d~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ 379 (677)
T KOG1915|consen 301 DAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEA 379 (677)
T ss_pred HHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33322222 22 24456778888888888889999999999999875 444221 1111 1 1111346
Q ss_pred CCHHHHHHHHHHHHhCCCCCChHHHHHH----HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048533 352 GRIRDANRLLNEMNEKKIAPDNVTCNTL----INAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIA 427 (591)
Q Consensus 352 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 427 (591)
.+.+.+.++|+..++. ++-...|+.-+ .....+..++..|.+++...+. ..|-..+|...|..-.+.++++.+
T Consensus 380 ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 380 EDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRC 456 (677)
T ss_pred hhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHH
Confidence 7889999999998884 44444554443 3344567889999999887764 478889999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 428 KELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRG-LCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQG 506 (591)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 506 (591)
..++++.++.+ +-+..+|......-...|+.+.|..+|.-+++.. .......|...|..-...|.++.|+.+++++.+
T Consensus 457 RkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 457 RKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 99999999876 3466778777777778999999999999998763 233456788888888889999999999999998
Q ss_pred CCCCcCHHHHHHHHHHHH-----HcC-----------ChhHHHHHHHHHHHC
Q 048533 507 NGILGDSVIYTSLAYAYW-----RAG-----------EPKACSDILDDMYRR 542 (591)
Q Consensus 507 ~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~ 542 (591)
. .+...+|.....--. +.| ....|.++|+++...
T Consensus 536 r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 536 R--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred h--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 5 334456666554433 333 456788888887653
No 37
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=2.1e-14 Score=124.95 Aligned_cols=306 Identities=17% Similarity=0.160 Sum_probs=232.0
Q ss_pred CCChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHH
Q 048533 37 SLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVL 116 (591)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 116 (591)
.+++.++..+=..+ ++++++|.+.|-.+.+..|+ +.++..+|+..+.+.|..++|+.++..+..+.........
T Consensus 34 ~lsr~Yv~GlNfLL---s~Q~dKAvdlF~e~l~~d~~---t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~ 107 (389)
T COG2956 34 RLSRDYVKGLNFLL---SNQPDKAVDLFLEMLQEDPE---TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRL 107 (389)
T ss_pred hccHHHHhHHHHHh---hcCcchHHHHHHHHHhcCch---hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHH
Confidence 45566665553333 27899999999999987776 8999999999999999999999999998875432222222
Q ss_pred HHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048533 117 NALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGV 196 (591)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 196 (591)
.+...|+.-|...|-++.|.++|..+.+.+.- -..+...|+..|-..++|++|+++-+++.+.+.
T Consensus 108 --------------lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~ 172 (389)
T COG2956 108 --------------LALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGG 172 (389)
T ss_pred --------------HHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC
Confidence 23455777899999999999999999885433 456889999999999999999999999999876
Q ss_pred CCCH----HHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 048533 197 VANI----HLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVT 272 (591)
Q Consensus 197 ~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 272 (591)
.+.. ..|--+...+....+++.|..++.+..+.+ +..+.+--.+.......|+++.|.+.++...+.+..--..+
T Consensus 173 q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ev 251 (389)
T COG2956 173 QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEV 251 (389)
T ss_pred ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHH
Confidence 6443 245556666667788999999999988765 33555566677888899999999999999998855444567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-
Q 048533 273 YNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKE- 351 (591)
Q Consensus 273 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~- 351 (591)
...|..+|...|+.++....+..+.+..++...-..+...-....-.+.|...+.+-... .|+...+..++..-...
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~da 329 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADA 329 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccc
Confidence 788889999999999999999988876777666666666555555566666665554444 58888888888765532
Q ss_pred --CCHHHHHHHHHHHHh
Q 048533 352 --GRIRDANRLLNEMNE 366 (591)
Q Consensus 352 --~~~~~a~~~~~~~~~ 366 (591)
|...+...+++.|..
T Consensus 330 eeg~~k~sL~~lr~mvg 346 (389)
T COG2956 330 EEGRAKESLDLLRDMVG 346 (389)
T ss_pred cccchhhhHHHHHHHHH
Confidence 345555556666544
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.3e-12 Score=117.86 Aligned_cols=163 Identities=15% Similarity=0.122 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 375 TCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYC 454 (591)
Q Consensus 375 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 454 (591)
|+..+.+.|+-.++.++|..+|++..+.+.. ....|+.+.+-|...++...|.+-++.+++.+ +.|...|-.+.++|.
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYE 409 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHH
Confidence 3444444444445555555555555444311 33444444445555555555555555555433 234445555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHH
Q 048533 455 NKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSD 534 (591)
Q Consensus 455 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 534 (591)
-.+...-|+-+|+++.+..+. |+..|..|+++|.+.++.++|++.|++....| ..+...+..+.+.|-+.++.++|.+
T Consensus 410 im~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHH
Confidence 555555555555555544222 45555555555555555555555555555432 1133445555555555555555555
Q ss_pred HHHHHHH
Q 048533 535 ILDDMYR 541 (591)
Q Consensus 535 ~~~~~~~ 541 (591)
.|++.++
T Consensus 488 ~yek~v~ 494 (559)
T KOG1155|consen 488 YYEKYVE 494 (559)
T ss_pred HHHHHHH
Confidence 5544443
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=1.5e-12 Score=127.07 Aligned_cols=285 Identities=9% Similarity=0.026 Sum_probs=187.1
Q ss_pred cCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHH
Q 048533 143 LKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKL 222 (591)
Q Consensus 143 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 222 (591)
.|++++|.+.+....+....| ...+.....+..+.|+++.|.+.+.++.+....+...........+...|+++.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 588888887777665543222 2223333445567888888888888887654332222222335677788888888888
Q ss_pred HHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 223 LCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDI-------VTYNSLIHGFCREGRMREARRLFRD 295 (591)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 295 (591)
++++.+.+ |.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.
T Consensus 176 l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 88887765 445677777888888888888888888888877554222 1233333333444556666677766
Q ss_pred hhc-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH
Q 048533 296 IKG-ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNV 374 (591)
Q Consensus 296 ~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 374 (591)
+.. .+.+......+...+...|+.++|.+++++..+. .|+... .++.+....++.+++.+..+...+.. +-|..
T Consensus 255 lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~ 329 (398)
T PRK10747 255 QSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPL 329 (398)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHH
Confidence 654 3335666777777888888888888888777764 344422 12233334577777777777777653 33556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048533 375 TCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLD 436 (591)
Q Consensus 375 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 436 (591)
.+..+...+.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6777777777777777777777777765 56777777777777777777777777776653
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=1.6e-12 Score=126.90 Aligned_cols=284 Identities=13% Similarity=0.052 Sum_probs=191.8
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHH--HHHHHHHhcCCHHHHHHH
Q 048533 248 KGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYT--TLIDGYCRANDLEEALRL 325 (591)
Q Consensus 248 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~ 325 (591)
.|+++.|.+.+....+..-.| ...+..........|+++.|..++.++.+..|+..... .....+...|+++.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467777766666544431111 12222233444666777777777777766555543322 224566667777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 048533 326 REVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDN-------VTCNTLINAYCKIGDTASAMKVKNR 398 (591)
Q Consensus 326 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~ 398 (591)
++.+.+.. +-++.....+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+.+...++++.
T Consensus 176 l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 77776654 224566666677777777777777777777766543222 1223333333344455666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 048533 399 MLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDV 478 (591)
Q Consensus 399 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 478 (591)
+.+. .+.++.....+...+...|+.++|..++++..+. +|+.... ++.+....++.+++.+..+...+..+. |+
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~-~~ 328 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD-TP 328 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC-CH
Confidence 5433 2447778888888899999999999999888874 3554322 233444568899999999998887554 77
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 479 SVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 479 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
..+..+...+.+.|++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++...
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 78889999999999999999999999874 68888888999999999999999999988765
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.66 E-value=2.1e-12 Score=126.78 Aligned_cols=289 Identities=10% Similarity=-0.016 Sum_probs=150.5
Q ss_pred hcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHH
Q 048533 142 NLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEK 221 (591)
Q Consensus 142 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 221 (591)
..|+++.|.+.+.+..+..+. ....+-....+..+.|+++.|.+.+.+..+....+...........+...|+++.|..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 345666666666555554322 1222333345555556666666666665544322222233333555555666666666
Q ss_pred HHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHhcCC----HHHHHHHHH
Q 048533 222 LLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIH---GFCREGR----MREARRLFR 294 (591)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~---~~~~~g~----~~~A~~~~~ 294 (591)
.++.+.+.. |.+..++..+...+...|++++|.+.+..+.+.++.++......-.. .....+. .+...+.+.
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 666665553 33444555566666666666666666666665543322111110011 1111122 222233333
Q ss_pred Hhhc-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048533 295 DIKG-ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVT---YNSILRKLCKEGRIRDANRLLNEMNEKKIA 370 (591)
Q Consensus 295 ~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 370 (591)
.... .+.+...+..++..+...|+.++|.+++++..+.. ||... ...........++.+.+.+.++...+.. +
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p 330 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-D 330 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-C
Confidence 2221 11255566666667777777777777777666652 23221 0111111223456666777776666542 2
Q ss_pred CCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048533 371 PDN--VTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGML 435 (591)
Q Consensus 371 ~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 435 (591)
-|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 234 45556777777777777777777743333335677667777777777777777777777654
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.66 E-value=9.1e-13 Score=129.31 Aligned_cols=294 Identities=12% Similarity=0.003 Sum_probs=155.5
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccC
Q 048533 85 IHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPH 164 (591)
Q Consensus 85 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 164 (591)
+......|+++.|.+.+.+..+..+ .....+...+.++.+.|+++.|.+.+.++.+..+.+.
T Consensus 91 glla~~~g~~~~A~~~l~~~~~~~~------------------~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~ 152 (409)
T TIGR00540 91 ALLKLAEGDYAKAEKLIAKNADHAA------------------EPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN 152 (409)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhcCC------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc
Confidence 3444555666666666655544321 1111223334556666666666666666655443322
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHH-HHHH
Q 048533 165 LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYN-TLIA 243 (591)
Q Consensus 165 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~ 243 (591)
..........+...|+++.|.+.++.+.+.++. +..++..+...+...|+++.|.+++..+.+.+.. +...+. .-..
T Consensus 153 l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~ 230 (409)
T TIGR00540 153 ILVEIARTRILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQK 230 (409)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHH
Confidence 223333456666666666666666666666544 4555666666666666666666666666665432 222221 1111
Q ss_pred ---HHHhcCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhH---HHHHHHHH
Q 048533 244 ---LYCKKGMHYEALAVQDRMEREGIS---PDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTY---TTLIDGYC 314 (591)
Q Consensus 244 ---~~~~~g~~~~a~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~li~~~~ 314 (591)
.....+..+++.+.+..+.+.... .+...+..+...+...|+.++|.+.+++..+..||.... ........
T Consensus 231 a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l 310 (409)
T TIGR00540 231 AEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRL 310 (409)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhc
Confidence 112222333333344444433111 255566666666666666666666666666544544321 11112223
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHH
Q 048533 315 RANDLEEALRLREVMAAKGVYPGV--VTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASA 392 (591)
Q Consensus 315 ~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 392 (591)
..++.+.+.+.++...+.. +-|+ .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|
T Consensus 311 ~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 311 KPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEA 389 (409)
T ss_pred CCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3455666666666655541 1123 344455666666666666666666433323355666666666666666666666
Q ss_pred HHHHHHH
Q 048533 393 MKVKNRM 399 (591)
Q Consensus 393 ~~~~~~~ 399 (591)
.++|++.
T Consensus 390 ~~~~~~~ 396 (409)
T TIGR00540 390 AAMRQDS 396 (409)
T ss_pred HHHHHHH
Confidence 6666654
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=6.6e-12 Score=115.66 Aligned_cols=431 Identities=11% Similarity=-0.036 Sum_probs=262.9
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 048533 83 TMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLM 162 (591)
Q Consensus 83 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 162 (591)
+.+.-+.++|+|++|++.|..++... |+.+..|.....+|...|+++++++--...++.++.
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~------------------p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~ 181 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELC------------------PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD 181 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcC------------------CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH
Confidence 46777888889999999998888753 333567777888888889999888888888887544
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHH
Q 048533 163 PHLHACTVLLNSLAKDRLTDMVWKVYKKMV-QLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTL 241 (591)
Q Consensus 163 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (591)
-..++..-..++-..|++++|+.=..-.. -.|+. +..+--.+=+.+-+ .|..-.++-.+.+-+|...+-. .
T Consensus 182 -Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~-f 253 (606)
T KOG0547|consen 182 -YVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSAT-F 253 (606)
T ss_pred -HHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHH-H
Confidence 35566666677777777777653222111 11121 11111111111111 1111122211111122222221 1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHh-cCCHHHHHHHHHHhhc---CCC-----Ch-----
Q 048533 242 IALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHG----FCR-EGRMREARRLFRDIKG---ATP-----NH----- 303 (591)
Q Consensus 242 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~----~~~-~g~~~~A~~~~~~~~~---~~~-----~~----- 303 (591)
|..|...=..+ .......+.......+..+ +.. ...+..|...+.+-.. ..+ |.
T Consensus 254 i~syf~sF~~~--------~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~ 325 (606)
T KOG0547|consen 254 IASYFGSFHAD--------PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYM 325 (606)
T ss_pred HHHHHhhcccc--------ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHH
Confidence 22221100000 0000000000111111111 111 0123444443333211 111 11
Q ss_pred -hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 048533 304 -VTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINA 382 (591)
Q Consensus 304 -~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 382 (591)
.+.......+.-.|+.-.|..-|+...+....++. .|..+...|....+.++.++.|+...+.+.. ++.+|..-...
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm 403 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQM 403 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHH
Confidence 11222222344578888999999998887544332 2777777888999999999999998887533 77788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048533 383 YCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEAL 462 (591)
Q Consensus 383 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 462 (591)
..-.+++++|..-|++.....+ -+...|.-+..+..+.+++++++..|++.++. ++..+..|+.....+..+++++.|
T Consensus 404 ~flL~q~e~A~aDF~Kai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A 481 (606)
T KOG0547|consen 404 RFLLQQYEEAIADFQKAISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKA 481 (606)
T ss_pred HHHHHHHHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHH
Confidence 8888999999999999988742 25666777777778899999999999999875 455678899999999999999999
Q ss_pred HHHHHHHHHCCCC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH-HHHHHHHHHHHHcCChhHHHH
Q 048533 463 LKLLDEFVSRGLC-------VDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDS-VIYTSLAYAYWRAGEPKACSD 534 (591)
Q Consensus 463 ~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~ 534 (591)
.+.|+.+++.... +.+.+-..++.. .-.+++..|..++.+..+. .|.. ..|..|...-.+.|+.++|++
T Consensus 482 ~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAie 558 (606)
T KOG0547|consen 482 VKQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIE 558 (606)
T ss_pred HHHHHHHHhhccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999876332 112222233322 2348999999999999985 3433 678899999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHhhh
Q 048533 535 ILDDMYRRRLMITLKIYRSFSASYA 559 (591)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~li~~~~ 559 (591)
+|++.... ..+..-++++|.
T Consensus 559 lFEksa~l-----Art~~E~~~a~s 578 (606)
T KOG0547|consen 559 LFEKSAQL-----ARTESEMVHAYS 578 (606)
T ss_pred HHHHHHHH-----HHhHHHHHHHHH
Confidence 99988763 234444444443
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=2.7e-12 Score=118.15 Aligned_cols=417 Identities=11% Similarity=-0.026 Sum_probs=251.4
Q ss_pred HHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCC
Q 048533 46 VLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDD 125 (591)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (591)
..++-+.++|.++.|+++|.++++..|+ .+.-|.+.+.+|...|+|++.++...+..+.+
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~---epiFYsNraAcY~~lgd~~~Vied~TkALEl~----------------- 179 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPD---EPIFYSNRAACYESLGDWEKVIEDCTKALELN----------------- 179 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCC---CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-----------------
Confidence 3455566779999999999999998775 35556689999999999999999988888765
Q ss_pred CCCccchHHHHHHHHHhcCChHHHHHHHHHHhh-CCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHH-CC--CCCCHH
Q 048533 126 PDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRV-HNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQ-LG--VVANIH 201 (591)
Q Consensus 126 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~ 201 (591)
|+...++..-..++-..|++++|+.=..-..- .|+. |..+-..+=+.+-+ .|....++-.+ .+ +-|+..
T Consensus 180 -P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~ 252 (606)
T KOG0547|consen 180 -PDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSAT 252 (606)
T ss_pred -cHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHH
Confidence 33344555667788888998888753222111 1221 22221111122211 22222222222 22 224443
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHh--cC---ChhHHHHHHHHHHHC---CCCCC----
Q 048533 202 LYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCK--KG---MHYEALAVQDRMERE---GISPD---- 269 (591)
Q Consensus 202 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g---~~~~a~~~~~~~~~~---~~~p~---- 269 (591)
...+....+...-.+ .+. .+.......+..++.. .+ .+..|.+.+.+-... ....+
T Consensus 253 fi~syf~sF~~~~~~--------~~~----~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~ 320 (606)
T KOG0547|consen 253 FIASYFGSFHADPKP--------LFD----NKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDA 320 (606)
T ss_pred HHHHHHhhccccccc--------ccc----CCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccch
Confidence 333333333211000 000 0000111111111110 01 222222222221110 00001
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 270 -----IVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVT-YTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNS 343 (591)
Q Consensus 270 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 343 (591)
..+...-.-.+.-.|+...|..-|+......|.... |--+...|...++.++..+.|+...+.+.. ++.+|..
T Consensus 321 ~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyH 399 (606)
T KOG0547|consen 321 ELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYH 399 (606)
T ss_pred hHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHh
Confidence 112222222344567888888888888775554444 777778888888888888888888876532 5556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048533 344 ILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKE 423 (591)
Q Consensus 344 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 423 (591)
-.....-.+++++|..=|++.+.... .+...|..+..+..+.++++++...|++..+. ++..+..|+.....+...++
T Consensus 400 RgQm~flL~q~e~A~aDF~Kai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqq 477 (606)
T KOG0547|consen 400 RGQMRFLLQQYEEAIADFQKAISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQ 477 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHh
Confidence 66666667888888888888877632 24556666666677788888888888888776 34567888888888888888
Q ss_pred HHHHHHHHHHHHHCCCC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048533 424 MDIAKELLFGMLDAGFS-------PSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDY 496 (591)
Q Consensus 424 ~~~a~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 496 (591)
++.|.+.|+..++.... +.+.+--.++..-. .+++..|.+++.++.+.+++ ....|..|...-.+.|+.++
T Consensus 478 Fd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~e 555 (606)
T KOG0547|consen 478 FDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDE 555 (606)
T ss_pred HHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHH
Confidence 99999888888764211 11111112222112 37889999999999887655 56778888888899999999
Q ss_pred HHHHHHHHHh
Q 048533 497 AQRLFNLMQG 506 (591)
Q Consensus 497 a~~~~~~~~~ 506 (591)
|+++|++...
T Consensus 556 AielFEksa~ 565 (606)
T KOG0547|consen 556 AIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=8.5e-12 Score=114.21 Aligned_cols=377 Identities=12% Similarity=0.027 Sum_probs=214.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIH-LYNVLIHACC 211 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~ 211 (591)
+...+..+.+.|....|+..|......-+. .-.+|..|...+.. +++.......+...+.. .---+..++.
T Consensus 167 lYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~-~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 167 LYLYGVVLKELGLLSLAIDSFVEVVNRYPW-FWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHhcCCc-chHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 444455566677777777777666654333 44445444443321 12222222111110111 1112334555
Q ss_pred ccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHH-
Q 048533 212 KSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGI--SPDIVTYNSLIHGFCREGRMRE- 288 (591)
Q Consensus 212 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~- 288 (591)
.....+++..-.+.....|.+.+...-+....+.....++++|+.+|+++.+..+ --|..+|+.++-.-.......-
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 5556666766666666666554444444455555566777777777777776521 1145566655533221111111
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048533 289 ARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKK 368 (591)
Q Consensus 289 A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 368 (591)
|..++ .+. +--..|..++..-|.-.++.++|...|+...+.+.. ....|+.+..-|...++...|.+-++..++-.
T Consensus 319 A~~v~-~id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~ 394 (559)
T KOG1155|consen 319 AQNVS-NID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN 394 (559)
T ss_pred HHHHH-Hhc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence 11111 111 222345556666667777777777777777765421 34556666666777777777777777777653
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 369 IAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSW 448 (591)
Q Consensus 369 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 448 (591)
+.|-..|-.|.++|.-.+-+.-|+-+|++..... +.|...|.+|..+|.+.++.++|+..|......| ..+...+..
T Consensus 395 -p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~ 471 (559)
T KOG1155|consen 395 -PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVR 471 (559)
T ss_pred -chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHH
Confidence 3366777777777777777777777777776654 3467777777777777777777777777777655 235566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 048533 449 LVDGYCNKNNEEALLKLLDEFVSR----GL-CVD-VSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYA 522 (591)
Q Consensus 449 l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 522 (591)
+...|-+.++..+|...+.+.++. |. .|. ..+..-|...+.+.+++++|..+....... .+...--..|++-
T Consensus 472 LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak~LlRe 549 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAKALLRE 549 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHHHHHHH
Confidence 777777777777777777766642 22 221 112222444456677777777666655542 4444445555555
Q ss_pred HHHc
Q 048533 523 YWRA 526 (591)
Q Consensus 523 ~~~~ 526 (591)
+.+.
T Consensus 550 ir~~ 553 (559)
T KOG1155|consen 550 IRKI 553 (559)
T ss_pred HHHh
Confidence 5443
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=3.8e-14 Score=135.45 Aligned_cols=290 Identities=13% Similarity=0.005 Sum_probs=212.6
Q ss_pred ChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHH
Q 048533 56 IPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSW 135 (591)
Q Consensus 56 ~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (591)
+..+|+..|.+...++++ +..+...++.+|+..+++++|..+|+.+.+..+.. -.+.++|+.
T Consensus 334 ~~~~A~~~~~klp~h~~n---t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~r---------------v~~meiyST 395 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN---TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYR---------------VKGMEIYST 395 (638)
T ss_pred HHHHHHHHHHhhHHhcCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---------------ccchhHHHH
Confidence 567899999997666666 66777789999999999999999999999876532 223345555
Q ss_pred HHHHHHhcCChHHHHHHH-HHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 048533 136 LVIFYANLKMTQDGLQVF-DQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSS 214 (591)
Q Consensus 136 l~~~~~~~~~~~~A~~~~-~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 214 (591)
.+-.+-+ +-++..+ +.+.+.++. ...+|..+.++|.-+++.+.|++.|++..+.++. ...+|+.+..-+....
T Consensus 396 ~LWHLq~----~v~Ls~Laq~Li~~~~~-sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~e 469 (638)
T KOG1126|consen 396 TLWHLQD----EVALSYLAQDLIDTDPN-SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATE 469 (638)
T ss_pred HHHHHHh----hHHHHHHHHHHHhhCCC-CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhH
Confidence 5443321 1223333 334444433 6778888888888888888888888888887544 6778888888888888
Q ss_pred ChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048533 215 DVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFR 294 (591)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 294 (591)
.+|.|...|+..+..+ +.+-.+|..+...|.+.++++.|+-.|++..+.++. +.+....+...+.+.|+.++|+.+++
T Consensus 470 e~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~ 547 (638)
T KOG1126|consen 470 EFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYE 547 (638)
T ss_pred HHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHH
Confidence 8888888888877653 234556667788888888888888888888876433 55666677777888888888888888
Q ss_pred HhhcCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 048533 295 DIKGATP-NHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPD 372 (591)
Q Consensus 295 ~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 372 (591)
+.....| |...--..+..+...+++++|+..++++++. ++-+...+..+...|.+.|+.+.|+.-|--+.+...++.
T Consensus 548 ~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 548 KAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 8876444 4555555667777788888888888888875 222456677777888888888888888888777644433
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=2.7e-15 Score=139.82 Aligned_cols=260 Identities=15% Similarity=0.108 Sum_probs=91.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCC-CccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 048533 135 WLVIFYANLKMTQDGLQVFDQMRVHN-LMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKS 213 (591)
Q Consensus 135 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 213 (591)
.++..+.+.|++++|++++.+..... ...+...|..+.......++++.|.+.++++.+.+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44667778888888888886554443 2234555555666666677888888888888776554 55566666665 677
Q ss_pred CChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048533 214 SDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREG-ISPDIVTYNSLIHGFCREGRMREARRL 292 (591)
Q Consensus 214 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~ 292 (591)
+++++|.+++....+. .++...+...+..+...++++++.++++.+.... .+++...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7888888777766544 2455666777777777788888888777766532 234566677777777777888888888
Q ss_pred HHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048533 293 FRDIKGATPN-HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAP 371 (591)
Q Consensus 293 ~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 371 (591)
+++.....|+ ......++..+...|+.+++.++++...+.. +.|+..+..+..++...|+.++|...+++..+.. +.
T Consensus 169 ~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 169 YRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 8777765564 5666777777777777777777776665542 3344556666777777777777777777776642 33
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048533 372 DNVTCNTLINAYCKIGDTASAMKVKNRML 400 (591)
Q Consensus 372 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 400 (591)
|+.....+..++...|+.++|..+..++.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 66667777777777777777777766554
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=4.3e-12 Score=110.81 Aligned_cols=291 Identities=13% Similarity=0.069 Sum_probs=208.2
Q ss_pred HHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCh
Q 048533 140 YANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVAN---IHLYNVLIHACCKSSDV 216 (591)
Q Consensus 140 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~ 216 (591)
|.-..+.++|+.+|-+|.+.++. +.++...|.+.+.+.|..++|++++..+.+..--+. ....-.|.+-|...|-+
T Consensus 45 fLLs~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 45 FLLSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HHhhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 44467889999999999987655 777888899999999999999999999887521111 12344566778888999
Q ss_pred hhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 048533 217 DKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDI----VTYNSLIHGFCREGRMREARRL 292 (591)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~ 292 (591)
|.|..+|..+...+ ..-..+...|+..|-...++++|+++-+++.+.+..+.. ..|..+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999988654 234567778899999999999999999988887654432 3455566666677888888888
Q ss_pred HHHhhcCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048533 293 FRDIKGATPNHV-TYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAP 371 (591)
Q Consensus 293 ~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 371 (591)
+.+.....|+.+ +--.+.+.....|+++.|.+.++...+.+...-+.+...+..+|.+.|+.++....+..+.+...
T Consensus 203 l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~-- 280 (389)
T COG2956 203 LKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT-- 280 (389)
T ss_pred HHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--
Confidence 888877666544 33445577888889999998888888876555566778888888888888888888888877633
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 048533 372 DNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCK---AKEMDIAKELLFGMLD 436 (591)
Q Consensus 372 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~ 436 (591)
....-..+........-.+.|..++.+-... +|+...+..++..-.. .|...+...++.+|+.
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 3333444444444444455565555555444 5777777777766543 3445556666666654
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=6.1e-15 Score=137.45 Aligned_cols=260 Identities=15% Similarity=0.132 Sum_probs=95.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHH-hhcC-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048533 275 SLIHGFCREGRMREARRLFRD-IKGA-TP-NHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKE 351 (591)
Q Consensus 275 ~l~~~~~~~g~~~~A~~~~~~-~~~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 351 (591)
.+...+.+.|++++|.++++. +... +| +...|..+.......++++.|.+.++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 456777778888888888854 3333 23 3445555666666778888888888888766432 44556666655 677
Q ss_pred CCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048533 352 GRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAG-LMLDQFTYKALIHGFCKAKEMDIAKEL 430 (591)
Q Consensus 352 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 430 (591)
+++++|.+++....+. .+++..+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|...
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7888888877766554 2455666777777778888888888887765432 234666777777777788888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048533 431 LFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGIL 510 (591)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 510 (591)
+++.++.. +.|......++..+...|+.+++.+++....+.. +.|+..+..+..++...|+.++|..++++..+.+ +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 88887754 2246667777777778888887777777776653 3355667777788888888888888888877642 3
Q ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 511 GDSVIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 511 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
.|+.+...+.+++...|+.++|.++.+++.+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 3667777788888888888888877776654
No 50
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.61 E-value=2e-10 Score=109.81 Aligned_cols=464 Identities=14% Similarity=0.108 Sum_probs=313.5
Q ss_pred hHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHH
Q 048533 40 STAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNAL 119 (591)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (591)
...+.+-+...|.. +++.+.+++.+..++.+|. ..++....+-.+...|+-++|....+.....+
T Consensus 7 E~~lF~~~lk~yE~-kQYkkgLK~~~~iL~k~~e---HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d----------- 71 (700)
T KOG1156|consen 7 ENALFRRALKCYET-KQYKKGLKLIKQILKKFPE---HGESLAMKGLTLNCLGKKEEAYELVRLGLRND----------- 71 (700)
T ss_pred HHHHHHHHHHHHHH-HHHHhHHHHHHHHHHhCCc---cchhHHhccchhhcccchHHHHHHHHHHhccC-----------
Confidence 34455555566654 8999999999999988887 45566667778889999999999998877643
Q ss_pred HhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 048533 120 VKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVAN 199 (591)
Q Consensus 120 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 199 (591)
..+..+|..++-.+....++++|++.|..++..+.. |...+.-+.-.=++.|+++.....-....+..+. .
T Consensus 72 -------~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ 142 (700)
T KOG1156|consen 72 -------LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-Q 142 (700)
T ss_pred -------cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-h
Confidence 344567888888888899999999999999998765 7888877777777888998888888888776443 5
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHhhCC-CCcCcccHHHHH------HHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 048533 200 IHLYNVLIHACCKSSDVDKVEKLLCEMEFKD-VRADLFTYNTLI------ALYCKKGMHYEALAVQDRMEREGISPDIVT 272 (591)
Q Consensus 200 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li------~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 272 (591)
...|..+..++.-.|+...|..++++..+.. -.|+...+.... ....+.|..+.|.+.+..-... ..|-..
T Consensus 143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla 220 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLA 220 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHH
Confidence 5678888888889999999999999887654 245655554433 3455678888888877665443 112222
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHH-HHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHH
Q 048533 273 -YNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLID-GYCRA-NDLEEALRLREVMAAKGVYPGVVTYNSI-LRKL 348 (591)
Q Consensus 273 -~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~-~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~l-l~~~ 348 (591)
--.-...+.+.+++++|..++..+....||...|..... ++.+- +..+....+|....+. .|....-..+ +...
T Consensus 221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl 298 (700)
T KOG1156|consen 221 FEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVL 298 (700)
T ss_pred HhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHh
Confidence 234456778899999999999999988888777665554 44333 3333333666666553 1211111111 1111
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------CC----------CCCCHH-
Q 048533 349 CKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLE--------AG----------LMLDQF- 409 (591)
Q Consensus 349 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~~----------~~~~~~- 409 (591)
.-..-.+...+++..+.+.|+++-. ..+...|-.....+ +.+++.. .| -+|...
T Consensus 299 ~~eel~~~vdkyL~~~l~Kg~p~vf---~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pttll 371 (700)
T KOG1156|consen 299 NGEELKEIVDKYLRPLLSKGVPSVF---KDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLL 371 (700)
T ss_pred CcchhHHHHHHHHHHHhhcCCCchh---hhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHH
Confidence 1122234455667777888876533 33333332211111 2222211 11 134443
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 410 -TYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSY-CSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRR 487 (591)
Q Consensus 410 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 487 (591)
++-.++..+-+.|+++.|...++..+.+ .|+. ..|..=.+.+...|+++.|..++++..+.+. +|...-..-..-
T Consensus 372 Wt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKY 448 (700)
T KOG1156|consen 372 WTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKY 448 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHH
Confidence 3445677888999999999999999875 4653 4455556778889999999999999998754 365555566677
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC--cC----HHHHHH--HHHHHHHcCChhHHHHHHHHHHH
Q 048533 488 FCKKEKVDYAQRLFNLMQGNGIL--GD----SVIYTS--LAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 488 ~~~~g~~~~a~~~~~~~~~~~~~--p~----~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
..+..+.++|.++.......|.. .+ .-.|-. -..+|.++|++..|.+=|..+-+
T Consensus 449 mLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 449 MLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 77899999999999998877641 01 112322 25568888888888777666655
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=5.9e-13 Score=127.44 Aligned_cols=287 Identities=10% Similarity=0.014 Sum_probs=195.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC----ChhhHHHHHHHHHhcCCHHHHHHH
Q 048533 250 MHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATP----NHVTYTTLIDGYCRANDLEEALRL 325 (591)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~ 325 (591)
+..+|+..|.++.+. +.-+.++...+..+|...+++++|.++|+.+....| +...|.+.+.-+-+.- ++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHH
Confidence 556788888775544 222446667788888888888888888888876444 4566766665442211 1222
Q ss_pred -HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 048533 326 -REVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGL 404 (591)
Q Consensus 326 -~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 404 (591)
-+.+.+.. +-.+.+|-++..+|.-.++.+.|++.|++.++.... ...+|+.+..-+.....+|.|...|+..+....
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 22233221 335678888888888888888888888888775211 556677676677777888888888877765421
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048533 405 MLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRAL 484 (591)
Q Consensus 405 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 484 (591)
. +...|..+.-.|.+.++++.|+-.|+++++.+ +-+.+....++..+.+.|+.++|+.+++++...+.. |+..--..
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 1 22334445667788888888888888887765 335566667777777888888888888888877655 55554555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 048533 485 IRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMIT 547 (591)
Q Consensus 485 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 547 (591)
+..+...+++++|++.++++.+. ++-+...+..++..|.+.|+.+.|+.-|--|.+.+.+.+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 56667778888888888888875 333457777888888888888888888887777654433
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.60 E-value=1.6e-11 Score=110.79 Aligned_cols=286 Identities=11% Similarity=0.036 Sum_probs=222.4
Q ss_pred cCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHH
Q 048533 143 LKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKL 222 (591)
Q Consensus 143 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 222 (591)
.|++.+|.+++.+..+.+.. ....|..-+.+.-+.|+.+.+-..+.++-+....++....-...+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 59999999999998887765 45566667788888999999999999999875566777888888999999999999999
Q ss_pred HHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 223 LCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDI-------VTYNSLIHGFCREGRMREARRLFRD 295 (591)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 295 (591)
++++...+ +.+.........+|.+.|++.....++.++.+.|.--+. .+|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 99988875 557788899999999999999999999999998865443 4566677666666666776777877
Q ss_pred hhc-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH
Q 048533 296 IKG-ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNV 374 (591)
Q Consensus 296 ~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 374 (591)
... .+.+...-..++.-+.++|+.++|.++..+..+.+..|+. ...-.+.+-++...-++..+...+. .+.++.
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~ 329 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPL 329 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHh-CCCChh
Confidence 764 4445666677788888899999999998888887665552 1222345566767666666666554 333557
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 375 TCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDA 437 (591)
Q Consensus 375 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 437 (591)
.+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|+..+|.++.++....
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 7788888888888888888888876665 578888888888888888888888888776643
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.60 E-value=1.9e-11 Score=110.21 Aligned_cols=285 Identities=14% Similarity=0.093 Sum_probs=212.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcC--CCChhhHHHHHHHHHhcCCHHHHHHH
Q 048533 248 KGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGA--TPNHVTYTTLIDGYCRANDLEEALRL 325 (591)
Q Consensus 248 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~ 325 (591)
.|++..|++...+-.+.+-.| ...|..-..+.-..|+.+.+-.++.+..+. .++....-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 577777777777766655443 345555566666778888888888887764 34455566666777778888888887
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 048533 326 REVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDN-------VTCNTLINAYCKIGDTASAMKVKNR 398 (591)
Q Consensus 326 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~ 398 (591)
.+.+.+.+.. ++........+|.+.|++.+...++..+.+.|.-.+. .+|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 7777776533 5666777778888888888888888888777765444 3466666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 048533 399 MLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDV 478 (591)
Q Consensus 399 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 478 (591)
..+. .+.++..-..++.-+.+.|+.++|.++..+..+.+..|+. ...-.+.+-++.+.-++..++..+..+ -++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~-~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHP-EDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCC-CCh
Confidence 5443 3456777788888899999999999999999988776662 122345567788887887777776533 367
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 479 SVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 479 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
..+..|+..|.+.+.|.+|...|+...+. .|+..+|..+.+++.+.|+..+|.+..++....
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 88999999999999999999999988764 789999999999999999999999999888754
No 54
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.60 E-value=4.2e-09 Score=100.77 Aligned_cols=256 Identities=9% Similarity=0.023 Sum_probs=138.2
Q ss_pred CCHHHHHHHHHHhhc-CCCC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCC
Q 048533 284 GRMREARRLFRDIKG-ATPN------HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPG---VVTYNSILRKLCKEGR 353 (591)
Q Consensus 284 g~~~~A~~~~~~~~~-~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~ 353 (591)
|+..+-...+.+... ..|- ...|..+...|-..|+++.|..+|++..+...+-- ..+|......-.+..+
T Consensus 361 ~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~ 440 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHEN 440 (835)
T ss_pred CChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhh
Confidence 445555555555432 2221 23466777788888888888888888776543211 2234444444456667
Q ss_pred HHHHHHHHHHHHhCC-----------CCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 354 IRDANRLLNEMNEKK-----------IAP------DNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIH 416 (591)
Q Consensus 354 ~~~a~~~~~~~~~~~-----------~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 416 (591)
++.|+++.+.....- .++ +...|...++..-..|-++....+|+++.+..+. ++.......-
T Consensus 441 ~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAm 519 (835)
T KOG2047|consen 441 FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAM 519 (835)
T ss_pred HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHH
Confidence 777777777654321 111 2234555666666677777888888888776543 3333333333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHh
Q 048533 417 GFCKAKEMDIAKELLFGMLDAGFSPSY-CSYSWLVDGYCN---KNNEEALLKLLDEFVSRGLCVDVSVYRALIRR--FCK 490 (591)
Q Consensus 417 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 490 (591)
.+-.+.-++++.+++++-+..-..|+. .+|+..+.-+.+ ...++.|..+|+++++ +++|...-+-.|+.+ --+
T Consensus 520 fLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe 598 (835)
T KOG2047|consen 520 FLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEE 598 (835)
T ss_pred HHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHH
Confidence 344555667777777665553323442 345554444332 2357778888888877 555443322222221 123
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCH--HHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 491 KEKVDYAQRLFNLMQGNGILGDS--VIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 491 ~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
.|-...|+.+++++... +++.. ..|+..+.--...=-+..-..+|+++++.
T Consensus 599 ~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~ 651 (835)
T KOG2047|consen 599 HGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES 651 (835)
T ss_pred hhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh
Confidence 46667777777776543 34332 34554444333222233344555555553
No 55
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.57 E-value=9.9e-10 Score=105.22 Aligned_cols=427 Identities=16% Similarity=0.155 Sum_probs=293.4
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHh
Q 048533 88 LTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHA 167 (591)
Q Consensus 88 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 167 (591)
+...++|.....+.+.+.+..+ ...+.+...+-.+...|+-++|........+.+++ +...
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k~~------------------eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vC 77 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKKFP------------------EHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVC 77 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHhCC------------------ccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchh
Confidence 4456788888888888877543 33344444555577789999999999999998877 8889
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHh
Q 048533 168 CTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCK 247 (591)
Q Consensus 168 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 247 (591)
|+.+.-.+...+++++|++.|..+.+.+.. |...+..+.-.-++.++++.....-....+.. +.....|..++.++.-
T Consensus 78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L 155 (700)
T KOG1156|consen 78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHL 155 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHH
Confidence 999999999999999999999999998766 78888888777888899988888777776652 3356678889999999
Q ss_pred cCChhHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHhhcCCCChhh-HHHHHHHHHhcCCH
Q 048533 248 KGMHYEALAVQDRMEREG-ISPDIVTYNSLI------HGFCREGRMREARRLFRDIKGATPNHVT-YTTLIDGYCRANDL 319 (591)
Q Consensus 248 ~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~------~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~ 319 (591)
.|++..|..+++...+.. -.|+...+.... ......|..++|.+.+........|-.. -..-...+.+.+++
T Consensus 156 ~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 156 LGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQL 235 (700)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhH
Confidence 999999999999998764 246666554332 3345678889999988877653344333 34566788899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHH-HHHHHHHhCCCCCChHHHHHH-HHHHHHcCCHHHHHHHH
Q 048533 320 EEALRLREVMAAKGVYPGVVTYNSILR-KLCKEGRIRDAN-RLLNEMNEKKIAPDNVTCNTL-INAYCKIGDTASAMKVK 396 (591)
Q Consensus 320 ~~a~~~~~~~~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~ 396 (591)
++|..++..+... .||...|...+. ++.+..+..++. .+|....+. . |....-..+ ++......-.+..-.++
T Consensus 236 EeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y-~r~e~p~Rlplsvl~~eel~~~vdkyL 311 (700)
T KOG1156|consen 236 EEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-Y-PRHECPRRLPLSVLNGEELKEIVDKYL 311 (700)
T ss_pred HhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-C-cccccchhccHHHhCcchhHHHHHHHH
Confidence 9999999999987 466666655544 443444444444 666655543 1 111111111 11111112233445566
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCC----------CCCCHHHH--HHHHHHHHhcCCHH
Q 048533 397 NRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGML----DAG----------FSPSYCSY--SWLVDGYCNKNNEE 460 (591)
Q Consensus 397 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~----------~~~~~~~~--~~l~~~~~~~g~~~ 460 (591)
....+.|+++ ++..+...|-.-...+-..++...+. ..| -+|....| -.+...+-..|+++
T Consensus 312 ~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~ 388 (700)
T KOG1156|consen 312 RPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYE 388 (700)
T ss_pred HHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHH
Confidence 6667777653 33333333322222221112221111 111 14555444 44667788999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 048533 461 ALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMY 540 (591)
Q Consensus 461 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 540 (591)
.|..+++.++..-+. -+..|..-.+.+...|++++|..++++..+.+ .||..+-..-+....++++.++|.++.....
T Consensus 389 ~A~~yId~AIdHTPT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFT 466 (700)
T KOG1156|consen 389 VALEYIDLAIDHTPT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFT 466 (700)
T ss_pred HHHHHHHHHhccCch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhh
Confidence 999999999976221 24455566688899999999999999999874 3455555578888899999999999999999
Q ss_pred HCCC
Q 048533 541 RRRL 544 (591)
Q Consensus 541 ~~~~ 544 (591)
+.|.
T Consensus 467 r~~~ 470 (700)
T KOG1156|consen 467 REGF 470 (700)
T ss_pred hccc
Confidence 9875
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=3.1e-11 Score=113.42 Aligned_cols=468 Identities=11% Similarity=0.015 Sum_probs=276.2
Q ss_pred CChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHH--cCCCCchHH
Q 048533 38 LTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIAL--RDFLSTPSV 115 (591)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ 115 (591)
-++..+..+. +.+.-.++++.|......-.- ...+.......+..+.+..++++|..++..... ..+.-++..
T Consensus 47 ~dp~d~~~~a-q~l~~~~~y~ra~~lit~~~l----e~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~ 121 (611)
T KOG1173|consen 47 NDPADIYWLA-QVLYLGRQYERAAHLITTYKL----EKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKD 121 (611)
T ss_pred CChHHHHHHH-HHHHhhhHHHHHHHHHHHhhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchh
Confidence 3444444443 333334778888777765421 123677777889999999999999999873311 111001000
Q ss_pred HHHHHhhcCC-----CCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 048533 116 LNALVKIHDD-----PDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKK 190 (591)
Q Consensus 116 ~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 190 (591)
-...+..... ......+...-...|....+.++|...|.+.+..++. ..+.+..++.+..-. +.+.++.
T Consensus 122 ~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c~Ea~~~lvs~~mlt-----~~Ee~~l 195 (611)
T KOG1173|consen 122 AANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK-CFEAFEKLVSAHMLT-----AQEEFEL 195 (611)
T ss_pred hhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh-hHHHHHHHHHHHhcc-----hhHHHHH
Confidence 0000000000 0111223333445677788888999999888877655 555555555544322 2233333
Q ss_pred HHHCCCC----CCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048533 191 MVQLGVV----ANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGI 266 (591)
Q Consensus 191 ~~~~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 266 (591)
+...... .++.....+.....-...-+.....-....-.+...+.........-+...+++.+..++.+.+.+..
T Consensus 196 l~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d- 274 (611)
T KOG1173|consen 196 LESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD- 274 (611)
T ss_pred HhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-
Confidence 3322111 12222222222111000000000000001111223345555556666777788888888888877652
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 267 SPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPN-HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSIL 345 (591)
Q Consensus 267 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll 345 (591)
++....+..-|.++...|+..+-..+=.++....|+ ..+|-++.--|...|+..+|.+.|.+....+.. =...|..+.
T Consensus 275 pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fg 353 (611)
T KOG1173|consen 275 PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFG 353 (611)
T ss_pred CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHh
Confidence 344555555566777777766666666666655554 667777777777778888888888777654322 134577777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048533 346 RKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMD 425 (591)
Q Consensus 346 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 425 (591)
..|.-.|..++|...+...-+. ++-...-+-.+.--|.+.++...|.++|.+..... +.|+...+.+.......+.+.
T Consensus 354 hsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~ 431 (611)
T KOG1173|consen 354 HSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYP 431 (611)
T ss_pred HHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhH
Confidence 7777778888888777766543 11111223334455677788888888888777653 346777777777777778888
Q ss_pred HHHHHHHHHHHC----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048533 426 IAKELLFGMLDA----G--FSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQR 499 (591)
Q Consensus 426 ~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 499 (591)
+|..+|+..+.. + ......+++.|..+|.+.+.+++|+..+++.+...+. +..++.++.-.|...|+++.|+.
T Consensus 432 ~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 432 EALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred HHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHH
Confidence 888888776621 1 0113446777888888888888888888888877544 78888888888888888888888
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHH
Q 048533 500 LFNLMQGNGILGDSVIYTSLAYAY 523 (591)
Q Consensus 500 ~~~~~~~~~~~p~~~~~~~l~~~~ 523 (591)
.|.+... +.|+..+...++..+
T Consensus 511 ~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 511 HFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHh--cCCccHHHHHHHHHH
Confidence 8888775 567776666655543
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.3e-10 Score=107.78 Aligned_cols=468 Identities=10% Similarity=0.049 Sum_probs=302.0
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHH
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLS 134 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (591)
.++.-|+-+-++....- . ++.-.+-+++++.-.|++.+|..++..-.-. ..+..+..
T Consensus 30 ~~y~~a~f~adkV~~l~-~---dp~d~~~~aq~l~~~~~y~ra~~lit~~~le-------------------~~d~~cry 86 (611)
T KOG1173|consen 30 HRYKTALFWADKVAGLT-N---DPADIYWLAQVLYLGRQYERAAHLITTYKLE-------------------KRDIACRY 86 (611)
T ss_pred HhhhHHHHHHHHHHhcc-C---ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh-------------------hhhHHHHH
Confidence 45565555555543321 2 3444455788888999999998877553211 22334555
Q ss_pred HHHHHHHhcCChHHHHHHHHHH----hhCCCcc---------C-----------HHhHHHHHHHHHhcCChhHHHHHHHH
Q 048533 135 WLVIFYANLKMTQDGLQVFDQM----RVHNLMP---------H-----------LHACTVLLNSLAKDRLTDMVWKVYKK 190 (591)
Q Consensus 135 ~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~---------~-----------~~~~~~ll~~~~~~~~~~~a~~~~~~ 190 (591)
..+..+.+..++++|..++... ......| | ...+-.-...|....+.++|...|.+
T Consensus 87 L~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~ 166 (611)
T KOG1173|consen 87 LAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKE 166 (611)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHH
Confidence 6677788888999998888722 1110000 0 00111112234445566677777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCC----CcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048533 191 MVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDV----RADLFTYNTLIALYCKKGMHYEALAVQDRMEREGI 266 (591)
Q Consensus 191 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 266 (591)
.... |...+.++...-.. ..-.+.+.++.+...+. ..+......+.....-...-+.....-.+-.-.+.
T Consensus 167 Al~~----D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l 240 (611)
T KOG1173|consen 167 ALLA----DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGL 240 (611)
T ss_pred HHhc----chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhh
Confidence 6654 33333332221111 01112222222222110 01111111111111000000111111111111123
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 267 SPDIVTYNSLIHGFCREGRMREARRLFRDIKG-ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSIL 345 (591)
Q Consensus 267 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll 345 (591)
.-+........+-+...+++.+..++.+.+.+ .++....+..-|.++...|+..+-+.+=..+.+. .+-.+.+|-++.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 34555666667778888999999999999876 4556777777788999999988888888888876 344667888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048533 346 RKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMD 425 (591)
Q Consensus 346 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 425 (591)
-.|...|+..+|.+.|.+....... -...|-.+...+.-.|..++|...+..+.+.- +-...-+..+.--|.+.++.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHH
Confidence 8888899999999999988765322 33579999999999999999999998887652 112223334555688899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC----CCHHHHHHHHHHHHhcCCHHHHHH
Q 048533 426 IAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSR--GLC----VDVSVYRALIRRFCKKEKVDYAQR 499 (591)
Q Consensus 426 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~g~~~~a~~ 499 (591)
.|.+.|.+..... +-|+..++-+.......+.+.+|..+|+..... ... .-..+++.|+.+|.+.+.+++|+.
T Consensus 398 LAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999999998754 456778888888888889999999999988732 111 134568999999999999999999
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 048533 500 LFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASY 558 (591)
Q Consensus 500 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 558 (591)
.+++.... .+-+..++.++.-.|...|+++.|+..|.+.+. +.|+-.+-..++..+
T Consensus 477 ~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 477 YYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 99999986 355889999999999999999999999999998 456665544444443
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=99.55 E-value=8.4e-12 Score=127.30 Aligned_cols=216 Identities=12% Similarity=0.098 Sum_probs=123.1
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc---------CCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCC
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTK---------NKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDD 125 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (591)
++.++|+..|+.+.+..|+ ...+|..++.++.. .+++++|...++++.+.+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~---~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld----------------- 334 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN---SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD----------------- 334 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-----------------
Confidence 3456788888888877776 55566666554432 233566666666666544
Q ss_pred CCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 126 PDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNV 205 (591)
Q Consensus 126 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 205 (591)
|.+..++..++.++...|++++|+..|+++++.++. +..++..+..++...|++++|...+++..+.++. +...+..
T Consensus 335 -P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~ 411 (553)
T PRK12370 335 -HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGIT 411 (553)
T ss_pred -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHH
Confidence 334455556666666667777777777777666544 5556666666666677777777777776666544 2222222
Q ss_pred HHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 048533 206 LIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPD-IVTYNSLIHGFCREG 284 (591)
Q Consensus 206 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 284 (591)
++..+...|++++|...+++......+.+...+..+..++...|++++|...+.++... .|+ ....+.+...|...|
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH
Confidence 33344455666666666666554421223334555566666666666666666665443 222 223334444445444
Q ss_pred CHHHHHHHHHHhh
Q 048533 285 RMREARRLFRDIK 297 (591)
Q Consensus 285 ~~~~A~~~~~~~~ 297 (591)
++|...++.+.
T Consensus 490 --~~a~~~l~~ll 500 (553)
T PRK12370 490 --ERALPTIREFL 500 (553)
T ss_pred --HHHHHHHHHHH
Confidence 35555555443
No 59
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.51 E-value=3e-08 Score=95.11 Aligned_cols=408 Identities=13% Similarity=0.111 Sum_probs=259.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhC-CCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 131 HVLSWLVIFYANLKMTQDGLQVFDQMRVH-NLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHA 209 (591)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 209 (591)
.++..-......+|++..-...|++++.. .+......|...+......+-++.+..+|++.++. ++..-.-.+..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 56777778888899999999999887765 33334457888888888888888999999998875 33446667888
Q ss_pred HHccCChhhHHHHHHHHhhCC------CCcCcccHHHHHHHHHhcCChhH---HHHHHHHHHHCCCCCCH--HHHHHHHH
Q 048533 210 CCKSSDVDKVEKLLCEMEFKD------VRADLFTYNTLIALYCKKGMHYE---ALAVQDRMEREGISPDI--VTYNSLIH 278 (591)
Q Consensus 210 ~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~p~~--~~~~~l~~ 278 (591)
+++.+++++|.+.+..+...+ .+.+-..|..+-....++-+.-. ...++..+... -+|. ..|..|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 888999999888888775432 13344456665555554433222 22333333322 3343 46788888
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc----------------C------CHHHHHHHHHHHHHCCC--
Q 048533 279 GFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRA----------------N------DLEEALRLREVMAAKGV-- 334 (591)
Q Consensus 279 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~----------------g------~~~~a~~~~~~~~~~~~-- 334 (591)
-|.+.|.+++|..+|++......++.-|+.+.+.|..- | +++-.+.-|+.+.....
T Consensus 257 YYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 89999999999999888765333333333333333321 1 12222333444333210
Q ss_pred ---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048533 335 ---------YPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAP------DNVTCNTLINAYCKIGDTASAMKVKNRM 399 (591)
Q Consensus 335 ---------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~ 399 (591)
+.+...|..-+. ...|+..+-...|.+..+. +.| -...|..+...|-..|+.+.|..+|++.
T Consensus 337 lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 112222322222 2345666777777777654 222 2356888899999999999999999998
Q ss_pred HHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----------CCCC------CHHHHHHHHHHHHhcCCH
Q 048533 400 LEAGLMLD---QFTYKALIHGFCKAKEMDIAKELLFGMLDA-----------GFSP------SYCSYSWLVDGYCNKNNE 459 (591)
Q Consensus 400 ~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~------~~~~~~~l~~~~~~~g~~ 459 (591)
.+...+.- ..+|..-...-.+..+++.|..+++..... +.++ +..+|+..++.--..|-+
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 87654322 234555555556778899999988877632 1111 233455566666677889
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH-HHHHHHHHHHHH---cCChhHHHHH
Q 048533 460 EALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDS-VIYTSLAYAYWR---AGEPKACSDI 535 (591)
Q Consensus 460 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~g~~~~A~~~ 535 (591)
+....+++.+++..+. ++.+.....-.+-.+.-++++.++|++-+..=..|+. .+|+..+.-+.+ .-..+.|..+
T Consensus 494 estk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 9999999999887665 4444444444455666788888888877664334554 677776666554 2357889999
Q ss_pred HHHHHHCCCCCCHH
Q 048533 536 LDDMYRRRLMITLK 549 (591)
Q Consensus 536 ~~~~~~~~~~~~~~ 549 (591)
|+++++ |.+|+..
T Consensus 573 FEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 573 FEQALD-GCPPEHA 585 (835)
T ss_pred HHHHHh-cCCHHHH
Confidence 999988 5655543
No 60
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.50 E-value=2.7e-09 Score=105.09 Aligned_cols=299 Identities=16% Similarity=0.130 Sum_probs=216.9
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048533 79 QSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRV 158 (591)
Q Consensus 79 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 158 (591)
+...-...++...|++++|++.++.....- .+...++...+..+.+.|+.++|..+|..+++
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I------------------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~ 66 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQI------------------LDKLAVLEKRAELLLKLGRKEEAEKIYRELID 66 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhC------------------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455677889999999999998765432 33445667788899999999999999999999
Q ss_pred CCCccCHHhHHHHHHHHHhcC-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh-hhHHHHHHHHhhCCCC
Q 048533 159 HNLMPHLHACTVLLNSLAKDR-----LTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDV-DKVEKLLCEMEFKDVR 232 (591)
Q Consensus 159 ~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~ 232 (591)
.++. |..-|..+..++.-.. +.+...++|+.+.+.-+. ......+.-.+.....+ ..+..++..+..+|+|
T Consensus 67 rNPd-n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~--s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP 143 (517)
T PF12569_consen 67 RNPD-NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPR--SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP 143 (517)
T ss_pred HCCC-cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcc--ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc
Confidence 9875 7777777777773332 567778899988776433 22222222222222233 3456677778888864
Q ss_pred cCcccHHHHHHHHHhcCChhHHHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048533 233 ADLFTYNTLIALYCKKGMHYEALAVQDRMERE----G----------ISPDI--VTYNSLIHGFCREGRMREARRLFRDI 296 (591)
Q Consensus 233 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~----------~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~ 296 (591)
.+|+.+-..|......+-..+++..+... + -+|+. +++..+...|...|++++|+++++..
T Consensus 144 ---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~a 220 (517)
T PF12569_consen 144 ---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKA 220 (517)
T ss_pred ---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45666666666555555555666655432 1 12343 35567788899999999999999999
Q ss_pred hcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH-
Q 048533 297 KGATPN-HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNV- 374 (591)
Q Consensus 297 ~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 374 (591)
....|+ +..|..-.+.+-+.|++++|.+.++.....+.. |...-+.....+.+.|++++|.+++......+..|...
T Consensus 221 I~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L 299 (517)
T PF12569_consen 221 IEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNL 299 (517)
T ss_pred HhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCH
Confidence 988887 678888899999999999999999999987643 77777788888999999999999999988776433221
Q ss_pred -----HH--HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048533 375 -----TC--NTLINAYCKIGDTASAMKVKNRMLEA 402 (591)
Q Consensus 375 -----~~--~~li~~~~~~~~~~~a~~~~~~~~~~ 402 (591)
.| .....+|.+.|++..|++.|..+.+.
T Consensus 300 ~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 300 NDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 12 44567899999999998888777553
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=2.8e-10 Score=100.84 Aligned_cols=438 Identities=13% Similarity=0.062 Sum_probs=200.6
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCC-CCchHHHHHHHh-----------h
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDF-LSTPSVLNALVK-----------I 122 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~-----------~ 122 (591)
.++..|+.+++........ ....+-.-++..+.+.|++++|...++.+..... +....+..++.. .
T Consensus 36 rDytGAislLefk~~~~~E--EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~ 113 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDRE--EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSI 113 (557)
T ss_pred ccchhHHHHHHHhhccchh--hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHH
Confidence 5677777777765532211 1123333466777777777777777777655332 222222222221 2
Q ss_pred cCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 048533 123 HDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHL 202 (591)
Q Consensus 123 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 202 (591)
....+.++-.-..++..-.+.++-++-..+-+.+.. ..+.-.+|.....-.-.+++|+++|.++...+ |+-..
T Consensus 114 ~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~a 186 (557)
T KOG3785|consen 114 AEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIA 186 (557)
T ss_pred HhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhh
Confidence 233444444444455555555554444443333322 12233344444444455777778877777643 23333
Q ss_pred HHHHH-HHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 203 YNVLI-HACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFC 281 (591)
Q Consensus 203 ~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 281 (591)
.|..+ -+|.+..-++-+.++++-..+. .+.+..+.|..+....+.=+-..|.+-...+..++-.. |- .+.-.+
T Consensus 187 lNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~-f~~~l~ 260 (557)
T KOG3785|consen 187 LNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YP-FIEYLC 260 (557)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----ch-hHHHHH
Confidence 44333 3455666667777777666554 23344445544444444333333333333333332110 11 111112
Q ss_pred hc-----CCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHhc
Q 048533 282 RE-----GRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRK-----LCKE 351 (591)
Q Consensus 282 ~~-----g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~-----~~~~ 351 (591)
+. ..-+.|++++-.+.+.-|. +--.++-.|.+.+++++|..+.+.+.- ..|-......+..+ ....
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSr 336 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKHIPE--ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSR 336 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhhChH--hhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcH
Confidence 21 2334555555444432222 222333345556666666655544432 12322222222222 2223
Q ss_pred CCHHHHHHHHHHHHhCCCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048533 352 GRIRDANRLLNEMNEKKIAPDNV-TCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKEL 430 (591)
Q Consensus 352 ~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 430 (591)
....-|.+.|+..-+.+..-|.. .-.++..++.-..++++.+.+++.+..--.. |...-..+.++++..|++.+|+++
T Consensus 337 eHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEel 415 (557)
T KOG3785|consen 337 EHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEEL 415 (557)
T ss_pred HHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHH
Confidence 33445555555444433222211 1223333333444555665555555443222 222223355666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048533 431 LFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRA-LIRRFCKKEKVDYAQRLFNLMQGNGI 509 (591)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~ 509 (591)
|-.+....++.+..-.+.+.++|...+.++.|..++-++ +.+.+..+... +.+.|.+.+.+--|.+.|+.+...
T Consensus 416 f~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l-- 490 (557)
T KOG3785|consen 416 FIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL-- 490 (557)
T ss_pred HhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--
Confidence 655544333322222344455666666666665554332 22223333222 233455666666666666665543
Q ss_pred CcCHHHHH
Q 048533 510 LGDSVIYT 517 (591)
Q Consensus 510 ~p~~~~~~ 517 (591)
.|++.-|.
T Consensus 491 DP~pEnWe 498 (557)
T KOG3785|consen 491 DPTPENWE 498 (557)
T ss_pred CCCccccC
Confidence 45555443
No 62
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=1.7e-09 Score=96.01 Aligned_cols=451 Identities=13% Similarity=0.095 Sum_probs=252.7
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHh
Q 048533 88 LTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHA 167 (591)
Q Consensus 88 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 167 (591)
+....++.-|+.+++.-...+- +....+-.|++-+|...|++++|+..|..+...+ .|+...
T Consensus 32 fls~rDytGAislLefk~~~~~-----------------EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el 93 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDR-----------------EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAEL 93 (557)
T ss_pred HHhcccchhHHHHHHHhhccch-----------------hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCccc
Confidence 4456788888888887664321 2223566788999999999999999999988754 456777
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHh
Q 048533 168 CTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCK 247 (591)
Q Consensus 168 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 247 (591)
+..|.-++.-.|.+.+|..+-....+ +.-.-..++....+.|+-++-..+.+.+... ..---+|......
T Consensus 94 ~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYm 163 (557)
T KOG3785|consen 94 GVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYM 163 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHH
Confidence 77777777778999999888776643 3444555667777888888877777666532 2233445666666
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHH
Q 048533 248 KGMHYEALAVQDRMEREGISPDIVTYNS-LIHGFCREGRMREARRLFRDIKGATPN-HVTYTTLIDGYCRANDLEEALRL 325 (591)
Q Consensus 248 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~ 325 (591)
.-.+++|+++|.+.... .|+-...|. +.-+|.+..-++-+.++++.....-|| +.+.|..+....+.-.-..|..-
T Consensus 164 R~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E 241 (557)
T KOG3785|consen 164 RMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDE 241 (557)
T ss_pred HHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHH
Confidence 67889999999999876 455555554 345667788888888888887665555 44455444433332221222222
Q ss_pred HHHHHHCCC--------------------------CC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH
Q 048533 326 REVMAAKGV--------------------------YP-----GVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNV 374 (591)
Q Consensus 326 ~~~~~~~~~--------------------------~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 374 (591)
.+.+.+.+- -| -+..-..++-.|.+.+++.+|..+.+++.-. .|-..
T Consensus 242 ~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~Ey 319 (557)
T KOG3785|consen 242 KKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEY 319 (557)
T ss_pred HHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHH
Confidence 222222210 01 0112223334455666666666666554321 12111
Q ss_pred HHHHHHHHHHHcCC-------HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048533 375 TCNTLINAYCKIGD-------TASAMKVKNRMLEAGLMLDQ-FTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSY 446 (591)
Q Consensus 375 ~~~~li~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 446 (591)
....+ .+...|+ ..-|...|...-..+...|. .--.++...+.-..++++....++.+...-...|. ..
T Consensus 320 ilKgv--v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~-Fn 396 (557)
T KOG3785|consen 320 ILKGV--VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDD-FN 396 (557)
T ss_pred HHHHH--HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch-hh
Confidence 11111 1222221 22333333333333322221 11233444444455566666666655543222222 22
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH-HHHHHHHHHHH
Q 048533 447 SWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVY-RALIRRFCKKEKVDYAQRLFNLMQGNGILGDS-VIYTSLAYAYW 524 (591)
Q Consensus 447 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 524 (591)
-.+.++++..|++.+|+++|-.+....++ |..+| ..|.++|.+.+.++.|..++-++.. +.+. .....+...|.
T Consensus 397 ~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CY 472 (557)
T KOG3785|consen 397 LNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCY 472 (557)
T ss_pred hHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHH
Confidence 33566677777777777777666554444 34444 3445566677777766655544332 2222 33445566677
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcchhHHHHHHHHHH-hcCCCChHHHHH
Q 048533 525 RAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNEILDLFWSHVV-DRGLMSKHIFKE 585 (591)
Q Consensus 525 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 585 (591)
+.+++=-|.+.|+.+... .|++..|. ++.|--...|+..+- ..+.++.+..++
T Consensus 473 k~~eFyyaaKAFd~lE~l--DP~pEnWe------GKRGACaG~f~~l~~~~~~~~p~~~~rE 526 (557)
T KOG3785|consen 473 KANEFYYAAKAFDELEIL--DPTPENWE------GKRGACAGLFRQLANHKTDPIPISQMRE 526 (557)
T ss_pred HHHHHHHHHHhhhHHHcc--CCCccccC------CccchHHHHHHHHHcCCCCCCchhHHHH
Confidence 777776677777666663 35555552 344444444444442 233334444443
No 63
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=3.4e-08 Score=89.73 Aligned_cols=406 Identities=11% Similarity=0.023 Sum_probs=270.4
Q ss_pred CCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcC-C-hhHHHHHHHHHHHCCCCCCHHHH
Q 048533 126 PDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDR-L-TDMVWKVYKKMVQLGVVANIHLY 203 (591)
Q Consensus 126 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~-~~~a~~~~~~~~~~~~~~~~~~~ 203 (591)
.+.+.+.....+.+|...++-+.|+..+.+.......|- .+.++..+.+.| + .+.+...-+-+.+. +...
T Consensus 93 ~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~---inlMla~l~~~g~r~~~~vl~ykevvrec-----p~aL 164 (564)
T KOG1174|consen 93 EFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPR---INLMLARLQHHGSRHKEAVLAYKEVIREC-----PMAL 164 (564)
T ss_pred CcccHHHHHHHHHHHHHHccchHHHHHHhcCCccccchh---HHHHHHHHHhccccccHHHHhhhHHHHhc-----chHH
Confidence 355677788899999999999999999887765533332 333333333322 2 22222222222221 1111
Q ss_pred HHHHHHHHccC--ChhhHHHHHHHHhhCCCCcCcccHHHHHHHHH--hcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHH
Q 048533 204 NVLIHACCKSS--DVDKVEKLLCEMEFKDVRADLFTYNTLIALYC--KKGMHYEALAVQDRMEREG-ISPDIVTYNSLIH 278 (591)
Q Consensus 204 ~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~ 278 (591)
. .|.+..+.+ ..+.+-. .|....++|...+....+.+++ ..++...+...+--+.... ++-|+.....+..
T Consensus 165 ~-~i~~ll~l~v~g~e~~S~---~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak 240 (564)
T KOG1174|consen 165 Q-VIEALLELGVNGNEINSL---VMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGK 240 (564)
T ss_pred H-HHHHHHHHhhcchhhhhh---hhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhh
Confidence 1 111222111 1111111 1222223444444444454444 3455555555554444332 4556778889999
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048533 279 GFCREGRMREARRLFRDIKGATPNH-VTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDA 357 (591)
Q Consensus 279 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 357 (591)
.+...|+.++|...|++.....|+. .......-.+.+.|+.+....+...+.... .-....|..-.......+++..|
T Consensus 241 ~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rA 319 (564)
T KOG1174|consen 241 CLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERA 319 (564)
T ss_pred hhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHH
Confidence 9999999999999999998767753 334444555677888888888877776542 12333444444555677889999
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 358 NRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDA 437 (591)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 437 (591)
+.+-++.++.+.. +...+-.-...+...|++++|.-.|+...... +.+...|..|+.+|...|++.+|..+-+...+.
T Consensus 320 L~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~ 397 (564)
T KOG1174|consen 320 LNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL 397 (564)
T ss_pred HHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 9999988876322 44555555677888999999999999987763 347899999999999999999999888777653
Q ss_pred CCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHH
Q 048533 438 GFSPSYCSYSWLV-DGYC-NKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVI 515 (591)
Q Consensus 438 ~~~~~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 515 (591)
++.+..++..+. ..+. ...--++|.+++++..+.++. -....+.+...+...|..+.++.+++..... .||...
T Consensus 398 -~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~L 473 (564)
T KOG1174|consen 398 -FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNL 473 (564)
T ss_pred -hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHH
Confidence 245566666553 3333 334468899999998876433 3456777888899999999999999998874 779999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 048533 516 YTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIY 551 (591)
Q Consensus 516 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 551 (591)
.+.|.+.+...+.+++|...|..+++.++. +..+.
T Consensus 474 H~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~-~~~sl 508 (564)
T KOG1174|consen 474 HNHLGDIMRAQNEPQKAMEYYYKALRQDPK-SKRTL 508 (564)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCcc-chHHH
Confidence 999999999999999999999999987643 33343
No 64
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.46 E-value=9.5e-11 Score=115.73 Aligned_cols=253 Identities=15% Similarity=0.166 Sum_probs=158.4
Q ss_pred HHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCC
Q 048533 152 VFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDV 231 (591)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 231 (591)
++-.+...|+.|+..+|..+|..|+..|+.+.|- +|..|.-...+.+...++.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4566777889999999999999999999999888 8888887777778888999998888888887775
Q ss_pred CcCcccHHHHHHHHHhcCChhH---HHHHHHHHHH----CCCC-CCHHHH-------------HHHHHHHHhcCCHHHHH
Q 048533 232 RADLFTYNTLIALYCKKGMHYE---ALAVQDRMER----EGIS-PDIVTY-------------NSLIHGFCREGRMREAR 290 (591)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~----~~~~-p~~~~~-------------~~l~~~~~~~g~~~~A~ 290 (591)
.|...+|..|..+|...||... +.+.+..+.. .|+- |....+ .+.+......|-++.++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999988655 2221211111 1111 001110 12233344455566666
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048533 291 RLFRDIKGATPNHVTYTTLIDGYCR-ANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKI 369 (591)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 369 (591)
+++..++-...+. .+...++-+.. ...+++-..+...... .|++.+|..++.+-...|+.+.|..++.+|.+.|+
T Consensus 160 kll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 6665554311111 11112332222 2223333333333332 46677777777777777777777777777777777
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048533 370 APDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKE 423 (591)
Q Consensus 370 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 423 (591)
+.+.+-|-.|+-+ .++...+..++..|...|+.|+..|+...+..+..+|.
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 7666655555544 56666666777777777777777777666666655444
No 65
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.44 E-value=7.3e-11 Score=107.41 Aligned_cols=198 Identities=15% Similarity=0.079 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
...+..++..+...|++++|...++++...+ |.+...+..++..|...|++++|++.+++..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~------------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 92 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD------------------PDDYLAYLALALYYQQLGELEKAEDSFRRAL 92 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555556666666666666665554432 2222344445555555666666666666555
Q ss_pred hCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcc
Q 048533 158 VHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV-ANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLF 236 (591)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 236 (591)
+.++. +...+..+...+...|++++|.+.++...+.... .....+..+...+...|++++|...+++..... +.+..
T Consensus 93 ~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 170 (234)
T TIGR02521 93 TLNPN-NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPE 170 (234)
T ss_pred hhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChH
Confidence 54433 3444555555555556666666655555543211 122334444455555555555555555555432 22334
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048533 237 TYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDI 296 (591)
Q Consensus 237 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 296 (591)
.+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+
T Consensus 171 ~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 171 SLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4555555555555555555555555443 1223344444445555555555555554444
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.43 E-value=1.6e-10 Score=117.98 Aligned_cols=250 Identities=11% Similarity=0.024 Sum_probs=173.1
Q ss_pred CCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHH---------hcCChHHHHHHHHHHhhCCCc
Q 048533 92 KHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYA---------NLKMTQDGLQVFDQMRVHNLM 162 (591)
Q Consensus 92 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~A~~~~~~~~~~~~~ 162 (591)
+.+++|+.+|+++.+.+|. +...+..++.+|. ..+++++|...++++++.++.
T Consensus 275 ~~~~~A~~~~~~Al~ldP~------------------~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~ 336 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN------------------SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN 336 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc------------------cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC
Confidence 4567899999998886543 3344444444443 234578999999999998776
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHH
Q 048533 163 PHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLI 242 (591)
Q Consensus 163 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 242 (591)
+..++..+...+...|++++|...|+++.+.++. +...+..+...+...|++++|...+++..+.+. .+...+..++
T Consensus 337 -~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P-~~~~~~~~~~ 413 (553)
T PRK12370 337 -NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDP-TRAAAGITKL 413 (553)
T ss_pred -CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CChhhHHHHH
Confidence 7888888888899999999999999999988755 667788888899999999999999999888742 2333344455
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC-hhhHHHHHHHHHhcCCHHH
Q 048533 243 ALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPN-HVTYTTLIDGYCRANDLEE 321 (591)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 321 (591)
..+...|++++|...++++.+...+-+...+..+..++...|+.++|...+.++....|+ ....+.+...|...| ++
T Consensus 414 ~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~ 491 (553)
T PRK12370 414 WITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ER 491 (553)
T ss_pred HHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HH
Confidence 556778899999999988876532224556777888888899999999999888765555 334455556667666 47
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 322 ALRLREVMAAKG-VYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEK 367 (591)
Q Consensus 322 a~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 367 (591)
|...++.+.+.. ..+....+ .-..+.-.|+.+.+..+ +++.+.
T Consensus 492 a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 492 ALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 777666665431 11221222 22223344555555444 666554
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=1.1e-11 Score=108.26 Aligned_cols=233 Identities=12% Similarity=0.040 Sum_probs=157.5
Q ss_pred HHHHH--HHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHH
Q 048533 78 LQSHW--TMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQ 155 (591)
Q Consensus 78 ~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 155 (591)
.+-|| .+++.|.+.|.+.+|...|....+.- ..+++|..|..+|.+-+++..|+.++.+
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~-------------------~~~dTfllLskvY~ridQP~~AL~~~~~ 281 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF-------------------PHPDTFLLLSKVYQRIDQPERALLVIGE 281 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC-------------------CchhHHHHHHHHHHHhccHHHHHHHHhh
Confidence 44444 47777777777777777777666542 2335566666777777777777777777
Q ss_pred HhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCc
Q 048533 156 MRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADL 235 (591)
Q Consensus 156 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 235 (591)
-++.-+. ++.......+.+-..++.+.|.++|+...+.... ++.....+...|.-.++++-|+.+|+++...|+. +.
T Consensus 282 gld~fP~-~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-sp 358 (478)
T KOG1129|consen 282 GLDSFPF-DVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SP 358 (478)
T ss_pred hhhcCCc-hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-Ch
Confidence 6665332 4444556667777777777777777777776543 5556556666667777777777777777777753 66
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC-hhhHHHHHHH
Q 048533 236 FTYNTLIALYCKKGMHYEALAVQDRMEREGISPD--IVTYNSLIHGFCREGRMREARRLFRDIKGATPN-HVTYTTLIDG 312 (591)
Q Consensus 236 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~ 312 (591)
..|+.+.-+|.-.++++-++..|++....--.|+ ..+|..+.......|++.-|.+.|+-.....++ ..+++.+.-.
T Consensus 359 eLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL 438 (478)
T KOG1129|consen 359 ELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVL 438 (478)
T ss_pred HHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHH
Confidence 7777777777777777777777777665433333 345666777777777777777777776654443 5667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 048533 313 YCRANDLEEALRLREVMAAK 332 (591)
Q Consensus 313 ~~~~g~~~~a~~~~~~~~~~ 332 (591)
-.+.|++++|..++......
T Consensus 439 ~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 439 AARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HhhcCchHHHHHHHHHhhhh
Confidence 77777777777777776654
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=2e-08 Score=95.47 Aligned_cols=448 Identities=13% Similarity=0.102 Sum_probs=261.9
Q ss_pred hhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCC
Q 048533 49 NLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDG 128 (591)
Q Consensus 49 ~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (591)
+.+.+.+++++|+..-...+...|+ +..+...-+.++.+.++|++|..+.+.-.... .....
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~pd---d~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~------------- 81 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIVPD---DEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSF------------- 81 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcCCC---cHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchh-------------
Confidence 3445678999999999999887665 77777777778999999999996665433211 00000
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 129 NSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIH 208 (591)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 208 (591)
+.--+-+..+.++.++|+..++-..+. +..+...-...+.+.+++++|..+|+.+.+.+.+ +. ..-++
T Consensus 82 ----~fEKAYc~Yrlnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~---d~~~r 149 (652)
T KOG2376|consen 82 ----FFEKAYCEYRLNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQ---DEERR 149 (652)
T ss_pred ----hHHHHHHHHHcccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hH---HHHHH
Confidence 011122356889999999999833322 4446777778899999999999999999887543 22 22221
Q ss_pred H-HHccCChhhHHHHHHHHhhCCCCcCcccHH---HHHHHHHhcCChhHHHHHHHHHHHCC--------CC-----CCH-
Q 048533 209 A-CCKSSDVDKVEKLLCEMEFKDVRADLFTYN---TLIALYCKKGMHYEALAVQDRMEREG--------IS-----PDI- 270 (591)
Q Consensus 209 ~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~~~~~~--------~~-----p~~- 270 (591)
+ +...+..-.+. +.+..... | ..+|. .....++..|++.+|+++++...+.+ .. -..
T Consensus 150 ~nl~a~~a~l~~~-~~q~v~~v---~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~ 224 (652)
T KOG2376|consen 150 ANLLAVAAALQVQ-LLQSVPEV---P-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELN 224 (652)
T ss_pred HHHHHHHHhhhHH-HHHhccCC---C-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHH
Confidence 1 11111111111 23333322 1 23443 34456778999999999999883211 11 011
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhc-CCCChh----hHHHHHHHHHhcCCHH-HHHHHHHHHHHCCC----------
Q 048533 271 VTYNSLIHGFCREGRMREARRLFRDIKG-ATPNHV----TYTTLIDGYCRANDLE-EALRLREVMAAKGV---------- 334 (591)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~----~~~~li~~~~~~g~~~-~a~~~~~~~~~~~~---------- 334 (591)
..-..+...+-..|+.++|..++..+.. ..+|.. .-|.++..-....-++ .++..++.......
T Consensus 225 ~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~ 304 (652)
T KOG2376|consen 225 PIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK 304 (652)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1223455667788999999999988875 333432 2233332221111112 12222222211100
Q ss_pred CCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048533 335 YPGVVTYN-SILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCK--IGDTASAMKVKNRMLEAGLMLDQFTY 411 (591)
Q Consensus 335 ~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~ 411 (591)
.-.....| .++..| .+..+.+.++...... ..|. ..+..++..+.+ ...+.++.+++....+........+.
T Consensus 305 qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~--~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~ 379 (652)
T KOG2376|consen 305 QKQAIYRNNALLALF--TNKMDQVRELSASLPG--MSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVL 379 (652)
T ss_pred HHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCc--cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHH
Confidence 00111112 222222 2333444444333322 1222 344445444332 22467777777777666433335566
Q ss_pred HHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----
Q 048533 412 KALIHGFCKAKEMDIAKELLF--------GMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSR--GLCVD---- 477 (591)
Q Consensus 412 ~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~---- 477 (591)
..++......|+++.|.+++. .+.+.+..|- +...++..+.+.++.+.|..++.++++. .-.+.
T Consensus 380 L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l 457 (652)
T KOG2376|consen 380 LLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIAL 457 (652)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHH
Confidence 667777889999999999999 5555554444 5566777788888777777777776642 01112
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 048533 478 VSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMY 540 (591)
Q Consensus 478 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 540 (591)
..++..+...-.+.|+-++|..+++++.+. -++|..+...++.+|++. +++.|..+-.++.
T Consensus 458 ~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 458 LSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 223334444445779999999999999986 366889999999999886 5777777655543
No 69
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.41 E-value=2.7e-08 Score=97.56 Aligned_cols=406 Identities=11% Similarity=-0.008 Sum_probs=238.4
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHH
Q 048533 128 GNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVAN-IHLYNVL 206 (591)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l 206 (591)
.++.+|..+.-+....|++..+.+.|++....-+. ..+.|+.+...+...|.-..|..+++........|+ ...+-..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 35567777777788888888888888887776554 667788888888888888888888877665543333 3333333
Q ss_pred HHHHH-ccCChhhHHHHHHHHhhC--CC--CcCcccHHHHHHHHHhc-----------CChhHHHHHHHHHHHCCCCCCH
Q 048533 207 IHACC-KSSDVDKVEKLLCEMEFK--DV--RADLFTYNTLIALYCKK-----------GMHYEALAVQDRMEREGISPDI 270 (591)
Q Consensus 207 l~~~~-~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~~~~~~~~p~~ 270 (591)
-..|. +.|..+++.++..+.... +. ......|..+.-+|... ....++++.+++..+.+.. |+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-Cc
Confidence 33333 346677777776666551 11 12233444444444321 1234567777777665432 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048533 271 VTYNSLIHGFCREGRMREARRLFRDIKGA--TPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKL 348 (591)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 348 (591)
.+...+.--|+-.++++.|....++.... ..+...|..++-.+.-.+++.+|+.+.+.....- .-|......-+..-
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIE 557 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhh
Confidence 33333344456677888888888777653 3456777777777777888888888877665531 00111111111111
Q ss_pred HhcCCHHHHHHHHHHHHhC---------------------C-------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048533 349 CKEGRIRDANRLLNEMNEK---------------------K-------IAPDNVTCNTLINAYCKIGDTASAMKVKNRML 400 (591)
Q Consensus 349 ~~~~~~~~a~~~~~~~~~~---------------------~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 400 (591)
...++.+++......++.. | ..-...++..+.......+........ +.
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~---Lp 634 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK---LP 634 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc---cC
Confidence 2234444444433332210 0 000111111111111100000000000 11
Q ss_pred HCCC--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 401 EAGL--MLD------QFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSR 472 (591)
Q Consensus 401 ~~~~--~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 472 (591)
.... .|+ ...|......+.+.+..++|...+.+..... +.....|......+...|..++|.+.|..+...
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 1111 122 1234445556677788888887777776643 345666777777777888888888888888876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 473 GLCVDVSVYRALIRRFCKKEKVDYAQR--LFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 473 ~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
++. ++.+..++..++.+.|+..-|.. ++..+.+.+ +.+...|-.+...+.+.|+.+.|.+.|....+-
T Consensus 714 dP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 714 DPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 544 56677888888888888777777 888888764 336688888888888888888888888888774
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=5.4e-11 Score=104.10 Aligned_cols=227 Identities=12% Similarity=0.061 Sum_probs=107.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCC
Q 048533 309 LIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGD 388 (591)
Q Consensus 309 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 388 (591)
+..+|.+.|.+.+|.+.++...+. .|-+.||..+-+.|.+..+...|+.++.+-++. .+.|+.....+.+.+-..++
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHh
Confidence 344444444444444444444433 233344444444444445555555544444443 22233333334444444455
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 389 TASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDE 468 (591)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 468 (591)
.++|.++|+...+.. +.+++....+...|.-.++++.|...+++++..|+ -++..|..+.-+|.-.+++|-++.-|++
T Consensus 306 ~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 555555555544432 22344444444444445555555555555555543 2444555555555555555555555555
Q ss_pred HHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 469 FVSRGLCV--DVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 469 ~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
+...-..| -..+|..+.......|++..|.+.|+.....+. -+...++.|.-.-.+.|+.++|..++..+..
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 54432211 233455555555555555555555555554421 1334555555555555555555555555544
No 71
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.39 E-value=2.4e-09 Score=105.49 Aligned_cols=292 Identities=13% Similarity=0.097 Sum_probs=161.4
Q ss_pred HHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHh---
Q 048533 207 IHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTY-NSLIHGFCR--- 282 (591)
Q Consensus 207 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~--- 282 (591)
...+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.+ |+...| ..+..+..-
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 34566778888888888775544 22234445566777778888888888888888773 444444 444444311
Q ss_pred --cCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048533 283 --EGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLE-EALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANR 359 (591)
Q Consensus 283 --~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 359 (591)
..+.+....+++++...-|...+...+.-.+..-..+. .+..++..+...|+++ +|+.+-..|....+..-...
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 12466667777777665555554444433333322333 3334556666666432 34455444554444444444
Q ss_pred HHHHHHhC----C----------CCCChH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048533 360 LLNEMNEK----K----------IAPDNV--TCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKE 423 (591)
Q Consensus 360 ~~~~~~~~----~----------~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 423 (591)
++...... + -+|+.. ++..+...|...|+.++|+++.+..+.+.+ ..+..|..-...+-+.|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP-t~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP-TLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHCCC
Confidence 44444321 0 122332 224445556666666666666666666531 125566666666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HH--HHHHHHHHhcCCHH
Q 048533 424 MDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVS------VY--RALIRRFCKKEKVD 495 (591)
Q Consensus 424 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~g~~~ 495 (591)
+.+|.+.++.....+ .-|..+-+..+..+.+.|++++|.+++....+.+..|... +| .....+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 666666666666554 2345555555666666666666666666665554322211 11 33345556666666
Q ss_pred HHHHHHHHHHh
Q 048533 496 YAQRLFNLMQG 506 (591)
Q Consensus 496 ~a~~~~~~~~~ 506 (591)
.|++.|....+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 66666655543
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.38 E-value=7.6e-10 Score=100.68 Aligned_cols=200 Identities=11% Similarity=-0.001 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 338 VVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHG 417 (591)
Q Consensus 338 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 417 (591)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3445555555666666666666666655542 2234555566666666666666666666666553 2244555566666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048533 418 FCKAKEMDIAKELLFGMLDAGF-SPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDY 496 (591)
Q Consensus 418 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 496 (591)
+...|++++|...+.+...... ......+..+...+...|++++|...+++..+.... +...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 6666777777777766665321 122344555666677777777777777777765432 45566677777777777777
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 497 AQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 497 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777777665 233455666666777777777777777666654
No 73
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.35 E-value=6.2e-10 Score=110.14 Aligned_cols=274 Identities=15% Similarity=0.162 Sum_probs=189.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048533 186 KVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREG 265 (591)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 265 (591)
.++-.+...|+.|+..||..+|.-||..|+.+.|- +|.-|..+..+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45667778899999999999999999999999998 8888888888888889999999988888888776
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHH
Q 048533 266 ISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAA-KGVYPGVVTYNSI 344 (591)
Q Consensus 266 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~l 344 (591)
.|.+.||..|..+|...|+... |+...+ -...+...+...|.-.....++..+.- .+..||..+ .
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~ 145 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---A 145 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---H
Confidence 5788999999999999999766 333221 112223334445544444444433221 123344332 3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048533 345 LRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGD-TASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKE 423 (591)
Q Consensus 345 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 423 (591)
+....-.|.++.+.+++..+...... .+... +++-+..... +++-..+-+.... .|++.+|.+++.+-...|+
T Consensus 146 illlv~eglwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~ 219 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGD 219 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCc
Confidence 33344456667777766554332111 11111 2333333222 2332222222222 5889999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048533 424 MDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEK 493 (591)
Q Consensus 424 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 493 (591)
.+.|..++.+|.+.|++.+..-|..|+-+ .++...+..++.-|.+.|+.|+..|+...+..+...|.
T Consensus 220 ~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 220 VDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99999999999999998888877777655 78888888899999999999999999888887777544
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.35 E-value=6.3e-10 Score=93.07 Aligned_cols=195 Identities=15% Similarity=0.004 Sum_probs=155.3
Q ss_pred HHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCC
Q 048533 47 LLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDP 126 (591)
Q Consensus 47 l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (591)
|+.-|...|++..|.+-+++++++.|+ +..+|..++..|.+.|..+.|.+.|+++....
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs---~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~------------------ 99 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPS---YYLAHLVRAHYYQKLGENDLADESYRKALSLA------------------ 99 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC------------------
Confidence 344455679999999999999998887 78888899999999999999999999988754
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCcc-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 127 DGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMP-HLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNV 205 (591)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 205 (591)
|.+-++++.....+|.+|++++|...|+++.....-+ ...+|..+.-+..+.|+++.|...|++..+.... .......
T Consensus 100 p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~ 178 (250)
T COG3063 100 PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLE 178 (250)
T ss_pred CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHH
Confidence 5667788888888999999999999999988763222 2447777777888888888888888888887655 4556667
Q ss_pred HHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 206 LIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 206 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
+.+...+.|++-.|..+++.....+. ++..+.-..|..-...|+.+.+-+.=..+.+.
T Consensus 179 ~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 179 LARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 78888888888888888888877764 77777777788888888887777766666554
No 75
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=1.7e-07 Score=89.26 Aligned_cols=406 Identities=13% Similarity=0.086 Sum_probs=224.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 048533 136 LVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSD 215 (591)
Q Consensus 136 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 215 (591)
-+..+...|++++|++..++++..++. +..++..-+-++.+.+.++.|+.+.+.-... ..+...+---..+..+.+.
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHccc
Confidence 345577889999999999999988754 6778888888899999999998665543221 1111111122334457899
Q ss_pred hhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048533 216 VDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISP-DIVTYNSLIHGFCREGRMREARRLFR 294 (591)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 294 (591)
.++|...++... +.|..+...-...+.+.|++++|+++|+.+.+++..- +...-..++.. +-.-.+. +.+
T Consensus 95 ~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~~~-~~q 165 (652)
T KOG2376|consen 95 LDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAALQVQ-LLQ 165 (652)
T ss_pred HHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhhhHH-HHH
Confidence 999999888332 2234466677788889999999999999997664321 11111111111 0001111 122
Q ss_pred HhhcCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCC------CHH-HHHHHHHHHHhcCCHHHHHH
Q 048533 295 DIKGATP-NHVTYTTLIDGYCRANDLEEALRLREVMAAKG-------VYP------GVV-TYNSILRKLCKEGRIRDANR 359 (591)
Q Consensus 295 ~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------~~p------~~~-~~~~ll~~~~~~~~~~~a~~ 359 (591)
....... +...+-.....+...|++.+|+++++...+.+ -.- ... .-..+...+-..|+..+|..
T Consensus 166 ~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 166 SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 2221111 11111222233344555555555555442110 000 000 01112222334455555555
Q ss_pred HHHHHHhCCCCCChHHH---------------------------------------------------HHHHHHHHHcCC
Q 048533 360 LLNEMNEKKIAPDNVTC---------------------------------------------------NTLINAYCKIGD 388 (591)
Q Consensus 360 ~~~~~~~~~~~~~~~~~---------------------------------------------------~~li~~~~~~~~ 388 (591)
++...++.... |.... +.++..| .+.
T Consensus 246 iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk 322 (652)
T KOG2376|consen 246 IYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNK 322 (652)
T ss_pred HHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhh
Confidence 55555444221 22110 1111111 122
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048533 389 TASAMKVKNRMLEAGLMLDQFTYKALIHGFC--KAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLL 466 (591)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 466 (591)
.+.+.++-.... +..| ...+..++.... +......+..++....+....-...+.-.++......|+++.|++++
T Consensus 323 ~~q~r~~~a~lp--~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 323 MDQVRELSASLP--GMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred HHHHHHHHHhCC--ccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 222222211111 1112 233444444332 22346777777777766543333456666778888999999999999
Q ss_pred H--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCcCHHHHHHHHHHHHHcCChhHH
Q 048533 467 D--------EFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGN------GILGDSVIYTSLAYAYWRAGEPKAC 532 (591)
Q Consensus 467 ~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~g~~~~A 532 (591)
. .+.+.+. .+.+...++..+.+.++.+.|..++...... +-.--..++.-++..-.+.|+-++|
T Consensus 400 ~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 9 5555444 3455666777788888877777777776641 1111123455555556678999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHhhhcch
Q 048533 533 SDILDDMYRRRLMITLKIYRSFSASYAKDN 562 (591)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 562 (591)
..+++++.+.. ++|..+...++-+|++.+
T Consensus 478 ~s~leel~k~n-~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 478 SSLLEELVKFN-PNDTDLLVQLVTAYARLD 506 (652)
T ss_pred HHHHHHHHHhC-CchHHHHHHHHHHHHhcC
Confidence 99999999964 358888999999998864
No 76
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.33 E-value=1.3e-08 Score=99.75 Aligned_cols=406 Identities=16% Similarity=0.058 Sum_probs=248.1
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+..+|-.+.-++.+.|++..+.+.||+.....+ .....|+.+...|...|.-..|+.+++..
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~------------------~~~e~w~~~als~saag~~s~Av~ll~~~ 383 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF------------------GEHERWYQLALSYSAAGSDSKAVNLLRES 383 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh------------------hhHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 566666777788888888888888888765321 12345666777777777777788877777
Q ss_pred hhCCCccC-HHhHHHHHHHHHh-cCChhHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHcc-----------CChhhH
Q 048533 157 RVHNLMPH-LHACTVLLNSLAK-DRLTDMVWKVYKKMVQL--GV--VANIHLYNVLIHACCKS-----------SDVDKV 219 (591)
Q Consensus 157 ~~~~~~~~-~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~ll~~~~~~-----------g~~~~a 219 (591)
......|+ ...+......|.+ .+.+++++..-.++... +. ......|..+.-+|... -...++
T Consensus 384 ~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ks 463 (799)
T KOG4162|consen 384 LKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKS 463 (799)
T ss_pred cccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHH
Confidence 66664443 3333333344433 45555555555554441 10 11233333333333211 123456
Q ss_pred HHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc-
Q 048533 220 EKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKG- 298 (591)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 298 (591)
.+.+++..+.+ +.|..+...+..-|+..++.+.|.+...+..+-+-.-+...|..+.-.+...+++.+|+.+.+....
T Consensus 464 lqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 464 LQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred HHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 67777776664 2344444445555667777888888777777765555677777777777777778888777776653
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------------C-------CCCCHHHHHHHHHHHHh
Q 048533 299 ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAK---------------------G-------VYPGVVTYNSILRKLCK 350 (591)
Q Consensus 299 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------------------~-------~~p~~~~~~~ll~~~~~ 350 (591)
...|......-+..-..-++.++++.....+... | ..-...++..+..-...
T Consensus 543 ~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~ 622 (799)
T KOG4162|consen 543 FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS 622 (799)
T ss_pred hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh
Confidence 2222222222222333345555555443333221 0 00011122222211111
Q ss_pred cCCHHHHHHHHHHHHhCCCCC--C------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048533 351 EGRIRDANRLLNEMNEKKIAP--D------NVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAK 422 (591)
Q Consensus 351 ~~~~~~a~~~~~~~~~~~~~~--~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 422 (591)
.+ ..+..-. .+......| + ...|......+.+.+..++|...+.+..... +.....|......+...|
T Consensus 623 ~~--~~~~se~-~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 623 QL--KSAGSEL-KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKG 698 (799)
T ss_pred hh--hhccccc-ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHH
Confidence 00 0000000 011111112 2 1245566677888899999988888877653 345677777778888999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048533 423 EMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLK--LLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRL 500 (591)
Q Consensus 423 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 500 (591)
.+++|.+.|......+ +-++.+..++...+.+.|+...|.. ++..+.+.++. ++..|..++..+.+.|+.+.|.+.
T Consensus 699 ~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaec 776 (799)
T KOG4162|consen 699 QLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAEC 776 (799)
T ss_pred hhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHH
Confidence 9999999999998754 3346788899999999998888888 99999998765 899999999999999999999999
Q ss_pred HHHHHhC
Q 048533 501 FNLMQGN 507 (591)
Q Consensus 501 ~~~~~~~ 507 (591)
|+...+.
T Consensus 777 f~aa~qL 783 (799)
T KOG4162|consen 777 FQAALQL 783 (799)
T ss_pred HHHHHhh
Confidence 9988864
No 77
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=3.4e-08 Score=93.05 Aligned_cols=434 Identities=10% Similarity=-0.017 Sum_probs=255.5
Q ss_pred hhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCc
Q 048533 50 LYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGN 129 (591)
Q Consensus 50 ~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (591)
.....|+++.|+..|..++...|. +...|.+-..+|+..|+|++|.+--.+..+.+ |..
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~---nhvlySnrsaa~a~~~~~~~al~da~k~~~l~------------------p~w 69 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPT---NHVLYSNRSAAYASLGSYEKALKDATKTRRLN------------------PDW 69 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCC---ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC------------------Cch
Confidence 334569999999999999998776 66777788889999999999988877777654 556
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhH---HHHHHHHHHHC---CCCCCHHHH
Q 048533 130 SHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDM---VWKVYKKMVQL---GVVANIHLY 203 (591)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~---~~~~~~~~~ 203 (591)
+..|+..+.++.-.|++++|+.-|.+-++..+. |...++.+..++........ --.++..+... ........|
T Consensus 70 ~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~ 148 (539)
T KOG0548|consen 70 AKGYSRKGAALFGLGDYEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAY 148 (539)
T ss_pred hhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHH
Confidence 678888999999999999999999999998765 67777777777621111000 00111111110 000011222
Q ss_pred HHHHHHHHccC-------ChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHh-cCChh----HHHHHHHHHHHC-CCCCCH
Q 048533 204 NVLIHACCKSS-------DVDKVEKLLCEMEFKDVRADLFTYNTLIALYCK-KGMHY----EALAVQDRMERE-GISPDI 270 (591)
Q Consensus 204 ~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~----~a~~~~~~~~~~-~~~p~~ 270 (591)
..++..+-+.. +.+......-.+...+. ..+...-..... ...+. .......++.+. ....-.
T Consensus 149 ~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a 224 (539)
T KOG0548|consen 149 VKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDE----LLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKA 224 (539)
T ss_pred HHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCcc----ccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhh
Confidence 22222221110 00001111000000000 000000000000 00000 000000000000 000012
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-----
Q 048533 271 VTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSIL----- 345 (591)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll----- 345 (591)
.-...+.++..+..++..|.+.+........+..-++....+|...|.+.++....+...+.|.. ...-|+.+-
T Consensus 225 ~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 225 HKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 23456777788888999999999888876644555666777888889888888877776666532 222233333
Q ss_pred --HHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048533 346 --RKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKE 423 (591)
Q Consensus 346 --~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 423 (591)
.++.+.++.+.+...|.+.+.....|+. ..+....+++....+...-.+... ..-...-...+.+.|+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccC
Confidence 3455567788888888886654333322 223344555555555443332221 1222233667788999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 424 MDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNL 503 (591)
Q Consensus 424 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 503 (591)
+..|...|.+++... +-|...|+...-+|.+.|.+..|+.-.+..++.++. ....|..=..++....++++|.+.|++
T Consensus 374 y~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999876 567888999999999999999999998888887432 444555556666677789999999999
Q ss_pred HHhCCCCcCHH-HHHHHHHHHH
Q 048533 504 MQGNGILGDSV-IYTSLAYAYW 524 (591)
Q Consensus 504 ~~~~~~~p~~~-~~~~l~~~~~ 524 (591)
.++. .|+.. ....+.++..
T Consensus 452 ale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 452 ALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHhc--CchhHHHHHHHHHHHH
Confidence 8886 34543 3333333333
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=3.6e-07 Score=83.30 Aligned_cols=268 Identities=12% Similarity=0.002 Sum_probs=118.7
Q ss_pred CHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 199 NIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIH 278 (591)
Q Consensus 199 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 278 (591)
|+.....+..++...|+.++|...|++....+ +-+..........+...|+.+....+...+.... .-....|..-+.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQ 308 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhh
Confidence 34444445555555555555555555544332 1112222222233334444444444444443321 011222222222
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048533 279 GFCREGRMREARRLFRDIKGATPN-HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDA 357 (591)
Q Consensus 279 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 357 (591)
......+++.|+.+-++.....|. ...+-.-...+...+++++|.-.|+..+... +.+...|..++.+|...|++.+|
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHH
Confidence 233344455555555444433332 2223222334444455555555555444331 12344555555555555555555
Q ss_pred HHHHHHHHhCCCCCChHHHHHHH-HHHHH-cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048533 358 NRLLNEMNEKKIAPDNVTCNTLI-NAYCK-IGDTASAMKVKNRMLEAGLMLD-QFTYKALIHGFCKAKEMDIAKELLFGM 434 (591)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~li-~~~~~-~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 434 (591)
.-+-+..... .+.+..+...+. ..+.- ..--++|.++++...+. .|+ ....+.+...+...|..+++..++++.
T Consensus 388 ~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 388 NALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 4444433322 122333333221 11111 11234555555555443 233 334445555555666666666666665
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048533 435 LDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGL 474 (591)
Q Consensus 435 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 474 (591)
+.. .||....+.|.+.+...+.+.+|...|..+...++
T Consensus 465 L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 465 LII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred Hhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 542 35555666666666666666666666666665543
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.28 E-value=5.5e-09 Score=87.58 Aligned_cols=206 Identities=15% Similarity=0.018 Sum_probs=165.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048533 131 HVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHAC 210 (591)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 210 (591)
.+...|+-.|.+.|++..|.+-+++.++.++. +..+|..+...|-+.|+.+.|.+-|+...+..+. +..+.|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 35566778899999999999999999998876 7889999999999999999999999999988766 778889999999
Q ss_pred HccCChhhHHHHHHHHhhCC-CCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048533 211 CKSSDVDKVEKLLCEMEFKD-VRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREA 289 (591)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 289 (591)
|..|++++|...|++....- ...-..+|..+.-+..+.|+++.|.+.|++..+.... ...+...+.....+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHH
Confidence 99999999999999987642 2223567888888888999999999999988876433 345667788888889999999
Q ss_pred HHHHHHhhc-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048533 290 RRLFRDIKG-ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTY 341 (591)
Q Consensus 290 ~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 341 (591)
...++.... ..++..+.-..|..--..|+.+.+-++=..+.+. -|...-+
T Consensus 193 r~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 193 RLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 999888865 4567777777778888888888887776666654 3444433
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.27 E-value=5.1e-09 Score=97.83 Aligned_cols=221 Identities=12% Similarity=-0.008 Sum_probs=153.8
Q ss_pred CChhHHHHHHHHHhhhCCCCCC-CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchH
Q 048533 55 HIPSLSCAFFKWAESAVPNYKH-SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL 133 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (591)
+..+.++..+..++...|-.+. ....|+.++.++...|++++|...|+++.+.+ |.++.++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~------------------P~~~~a~ 101 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR------------------PDMADAY 101 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC------------------CCCHHHH
Confidence 4577888888888764442122 24667889999999999999999999988865 4566788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKS 213 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 213 (591)
..++..|...|++++|+..|++.++.++. +..++..+..++...|++++|.+.|+...+.++. +. ........+...
T Consensus 102 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~ 178 (296)
T PRK11189 102 NYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESK 178 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHcc
Confidence 88999999999999999999999988765 6778888888999999999999999999887544 22 222223334556
Q ss_pred CChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC---C--CC-CHHHHHHHHHHHHhcCCHH
Q 048533 214 SDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREG---I--SP-DIVTYNSLIHGFCREGRMR 287 (591)
Q Consensus 214 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~--~p-~~~~~~~l~~~~~~~g~~~ 287 (591)
+++++|...+.+..... .++...+ .......|+...+ +.+..+.+.. + .| ...+|..+...+...|+++
T Consensus 179 ~~~~~A~~~l~~~~~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~ 253 (296)
T PRK11189 179 LDPKQAKENLKQRYEKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLD 253 (296)
T ss_pred CCHHHHHHHHHHHHhhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 78999999997755432 2332222 2223345555444 3444444321 1 11 2346777777788888888
Q ss_pred HHHHHHHHhhcCCC
Q 048533 288 EARRLFRDIKGATP 301 (591)
Q Consensus 288 ~A~~~~~~~~~~~~ 301 (591)
+|...|++.....|
T Consensus 254 ~A~~~~~~Al~~~~ 267 (296)
T PRK11189 254 EAAALFKLALANNV 267 (296)
T ss_pred HHHHHHHHHHHhCC
Confidence 88888887766443
No 81
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.26 E-value=7e-09 Score=100.93 Aligned_cols=195 Identities=19% Similarity=0.179 Sum_probs=110.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhc--------CCCCh-h
Q 048533 241 LIALYCKKGMHYEALAVQDRMERE-----G-ISPD-IVTYNSLIHGFCREGRMREARRLFRDIKG--------ATPNH-V 304 (591)
Q Consensus 241 li~~~~~~g~~~~a~~~~~~~~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~-~ 304 (591)
+...|...+++.+|..+|+++... | ..|. ..+++.|..+|.+.|++++|..+++...+ ..|.+ .
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 444555555555555555555431 1 1122 23455555566666666666555555432 11221 2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CC
Q 048533 305 TYTTLIDGYCRANDLEEALRLREVMAAK---GVYP----GVVTYNSILRKLCKEGRIRDANRLLNEMNEK-----K--IA 370 (591)
Q Consensus 305 ~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~ 370 (591)
.++.++..++..+++++|..++....+. -+.+ -..+++.+...|.+.|++++|.++++..+.. | ..
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 2445555666666666666666554332 0111 1345677777777777777777777766542 1 11
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048533 371 PDNVTCNTLINAYCKIGDTASAMKVKNRMLE----AGL--MLDQFTYKALIHGFCKAKEMDIAKELLFGML 435 (591)
Q Consensus 371 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 435 (591)
-....++.+...|.+.++..+|..+|.+... .|+ +-...+|..|...|.+.|+++.|.++.+.+.
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1234566677777777777777766665432 221 1224677888888888888888888877766
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.24 E-value=6.8e-09 Score=96.99 Aligned_cols=221 Identities=15% Similarity=0.054 Sum_probs=141.1
Q ss_pred cCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHH
Q 048533 90 KNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACT 169 (591)
Q Consensus 90 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 169 (591)
..+..+.++.-+..++..... .++.....+..++..|.+.|+.++|+..|+++++.++. +..+|+
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~--------------~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~ 102 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDL--------------TDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYN 102 (296)
T ss_pred CchHHHHHHHHHHHHHccccC--------------CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHH
Confidence 345556666666666643321 11233456777778888888888888888888887765 678888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcC
Q 048533 170 VLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKG 249 (591)
Q Consensus 170 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 249 (591)
.+...+...|+++.|...|+...+..+. +..++..+..++...|++++|.+.|+.....+ |+..............+
T Consensus 103 ~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~ 179 (296)
T PRK11189 103 YLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKL 179 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccC
Confidence 8888888888888888888888887654 56677777778888888888888888887763 33322222222344567
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc-------CCC-ChhhHHHHHHHHHhcCCHHH
Q 048533 250 MHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKG-------ATP-NHVTYTTLIDGYCRANDLEE 321 (591)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~-~~~~~~~li~~~~~~g~~~~ 321 (591)
++++|...|.+..... .|+...+ .+.. ...|+...+ ..+..+.. ..| ...+|..+...+.+.|++++
T Consensus 180 ~~~~A~~~l~~~~~~~-~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~ 254 (296)
T PRK11189 180 DPKQAKENLKQRYEKL-DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDE 254 (296)
T ss_pred CHHHHHHHHHHHHhhC-CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 7888888886655332 2332222 2222 224444333 23333321 111 23467777777778888888
Q ss_pred HHHHHHHHHHCC
Q 048533 322 ALRLREVMAAKG 333 (591)
Q Consensus 322 a~~~~~~~~~~~ 333 (591)
|...|++..+.+
T Consensus 255 A~~~~~~Al~~~ 266 (296)
T PRK11189 255 AAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHhC
Confidence 888887777654
No 83
>PF13041 PPR_2: PPR repeat family
Probab=99.22 E-value=4.5e-11 Score=77.66 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=38.4
Q ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhc
Q 048533 511 GDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAK 560 (591)
Q Consensus 511 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 560 (591)
||..+|+.++++|.+.|++++|.++|++|.+.|+.||..+|+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777764
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.21 E-value=1.6e-07 Score=91.41 Aligned_cols=202 Identities=11% Similarity=-0.007 Sum_probs=120.6
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
....|+.++..+...|+.+++...+.......+.... ...........+...|++++|.+.+++.
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~e~~~~~a~~~~~~g~~~~A~~~~~~~ 69 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARAT---------------ERERAHVEALSAWIAGDLPKALALLEQL 69 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5667777777777778888877777666654432211 1112222344566778888888888887
Q ss_pred hhCCCccCHHhHHHHHHHHH----hcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhhHHHHHHHHhhCCC
Q 048533 157 RVHNLMPHLHACTVLLNSLA----KDRLTDMVWKVYKKMVQLGVVAN-IHLYNVLIHACCKSSDVDKVEKLLCEMEFKDV 231 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 231 (591)
.+..+. +...+.. ...+. ..+..+.+.+.+... ....|+ ......+...+...|++++|...+++.....
T Consensus 70 l~~~P~-~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~- 144 (355)
T cd05804 70 LDDYPR-DLLALKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN- 144 (355)
T ss_pred HHHCCC-cHHHHHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 776543 3333332 11222 234444444444431 111222 2333445566777788888888888877764
Q ss_pred CcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 048533 232 RADLFTYNTLIALYCKKGMHYEALAVQDRMEREGI-SPDI--VTYNSLIHGFCREGRMREARRLFRDIKG 298 (591)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 298 (591)
+.+...+..+..++...|++++|...+++...... .|+. ..|..+...+...|++++|..++++...
T Consensus 145 p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 145 PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 34556667777777788888888888777765422 1222 2344566777777888888888877653
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.20 E-value=1.1e-07 Score=92.56 Aligned_cols=306 Identities=12% Similarity=-0.000 Sum_probs=184.8
Q ss_pred HHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHH
Q 048533 41 TAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALV 120 (591)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 120 (591)
...+..+..++...++++.|...+..+....|......+.....+..+...|++++|.+.++++....|...
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~-------- 77 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL-------- 77 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH--------
Confidence 334455556665668889888888888776765333344445567788899999999999999988654322
Q ss_pred hhcCCCCCccchHHH---HHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 121 KIHDDPDGNSHVLSW---LVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV 197 (591)
Q Consensus 121 ~~~~~~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (591)
..+.. ........+....+.+.+...... ..........+...+...|++++|.+.+++..+..+.
T Consensus 78 ----------~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~ 146 (355)
T cd05804 78 ----------LALKLHLGAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD 146 (355)
T ss_pred ----------HHHHHhHHHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 12221 111112245555666665552222 1223445556677888999999999999999998755
Q ss_pred CCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCC-cCc--ccHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHH
Q 048533 198 ANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVR-ADL--FTYNTLIALYCKKGMHYEALAVQDRMEREGI-SPDIVTY 273 (591)
Q Consensus 198 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~ 273 (591)
+...+..+...+...|++++|..++++....... ++. ..|..+...+...|++++|..++++...... .+.....
T Consensus 147 -~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~ 225 (355)
T cd05804 147 -DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDL 225 (355)
T ss_pred -CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHH
Confidence 5677888899999999999999999998765321 222 2355788889999999999999999864422 1122111
Q ss_pred -H--HHHHHHHhcCCHHHHHHH--H-HHhhcCCCC-hhhH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CH---
Q 048533 274 -N--SLIHGFCREGRMREARRL--F-RDIKGATPN-HVTY--TTLIDGYCRANDLEEALRLREVMAAKGVYP---GV--- 338 (591)
Q Consensus 274 -~--~l~~~~~~~g~~~~A~~~--~-~~~~~~~~~-~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~p---~~--- 338 (591)
+ .++..+...|....+.++ + .......+. ...+ .....++...|+.+.|..+++.+......+ ..
T Consensus 226 ~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 305 (355)
T cd05804 226 LDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPAR 305 (355)
T ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHH
Confidence 1 223333344433333332 1 111111111 1122 245566677888888888887776532110 00
Q ss_pred HHHHHHHH--HHHhcCCHHHHHHHHHHHHh
Q 048533 339 VTYNSILR--KLCKEGRIRDANRLLNEMNE 366 (591)
Q Consensus 339 ~~~~~ll~--~~~~~~~~~~a~~~~~~~~~ 366 (591)
.+-..++. ++...|+.++|.+.+.....
T Consensus 306 ~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 306 DVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11111222 23456777777776666554
No 86
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.18 E-value=1.3e-07 Score=83.99 Aligned_cols=310 Identities=11% Similarity=0.034 Sum_probs=169.3
Q ss_pred HhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCC
Q 048533 48 LNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPD 127 (591)
Q Consensus 48 ~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (591)
+.-...+|++..|+..|..+++..|+ +..+++.-+..|...|+-.-|+.-+.++++..+.- .
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~dp~---~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF----~----------- 106 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEGDPN---NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDF----M----------- 106 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCCch---hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccH----H-----------
Confidence 34444457777777777777776665 66667777777777777777777777776643211 1
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 128 GNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLI 207 (591)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 207 (591)
-....-...+.++|.+++|..=|+..++.++..+ ....+..+. ...++ .......+
T Consensus 107 ---~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~-----~~~eaqskl-------~~~~e---------~~~l~~ql 162 (504)
T KOG0624|consen 107 ---AARIQRGVVLLKQGELEQAEADFDQVLQHEPSNG-----LVLEAQSKL-------ALIQE---------HWVLVQQL 162 (504)
T ss_pred ---HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcc-----hhHHHHHHH-------HhHHH---------HHHHHHHH
Confidence 1111233456677777777777777777654211 000111100 00000 11122234
Q ss_pred HHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048533 208 HACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMR 287 (591)
Q Consensus 208 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 287 (591)
..+...|+...|+.....+++.. +.|+..+..-..+|...|.+..|+.-+....+.. .-+..++..+...+...|+.+
T Consensus 163 ~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 163 KSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHH
Confidence 45566777888888887777663 4577777777788888888888877666655542 224556666777777788888
Q ss_pred HHHHHHHHhhcCCCChhhHHHH-------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhc
Q 048533 288 EARRLFRDIKGATPNHVTYTTL-------------IDGYCRANDLEEALRLREVMAAKGVYPGV---VTYNSILRKLCKE 351 (591)
Q Consensus 288 ~A~~~~~~~~~~~~~~~~~~~l-------------i~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~ll~~~~~~ 351 (591)
.++...++..+..||....-.. +......++|.++++-.+...+....... ..+..+-.++...
T Consensus 241 ~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 241 NSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred HHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccccc
Confidence 8888888877777764332111 11122334444444444444443211011 1122333344444
Q ss_pred CCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048533 352 GRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEA 402 (591)
Q Consensus 352 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 402 (591)
|++.+|++...++++.. +.|..++.--..+|.-...++.|+.-|+...+.
T Consensus 321 ~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred CCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 55555555555555431 112344444444555445555555555554443
No 87
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.17 E-value=1.3e-08 Score=99.21 Aligned_cols=237 Identities=19% Similarity=0.187 Sum_probs=171.8
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhc--------C
Q 048533 235 LFTYNTLIALYCKKGMHYEALAVQDRMERE-----G-ISPDIVT-YNSLIHGFCREGRMREARRLFRDIKG--------A 299 (591)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~-~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--------~ 299 (591)
..+...+...|...|+++.|..+++...+. | ..|...+ .+.+...|...+++.+|..+|+++.. .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 334455666777777777777777665443 2 1334333 34577889999999999999988753 2
Q ss_pred CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---C
Q 048533 300 TPN-HVTYTTLIDGYCRANDLEEALRLREVMAAK-----GV-YPGV-VTYNSILRKLCKEGRIRDANRLLNEMNEK---K 368 (591)
Q Consensus 300 ~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~ 368 (591)
.|. ..+++.|...|++.|++++|...++...+. |. .|.. ..++.+...+...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 232 456788888999999999998887766532 21 2222 23566777788899999999999876442 1
Q ss_pred CCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 048533 369 IAP----DNVTCNTLINAYCKIGDTASAMKVKNRMLEA----GLM---LDQFTYKALIHGFCKAKEMDIAKELLFGMLD- 436 (591)
Q Consensus 369 ~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 436 (591)
+.+ -..+++.|...|...|++++|.++++.++.. +.. -....++.+...|.+.+++.+|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 222 2367899999999999999999999998653 111 1245678889999999999999999887653
Q ss_pred ---CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048533 437 ---AG--FSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVS 471 (591)
Q Consensus 437 ---~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 471 (591)
.| .+-...+|..|...|...|+++.|.++.+....
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 22 223357889999999999999999999998873
No 88
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.17 E-value=9.3e-07 Score=78.67 Aligned_cols=330 Identities=10% Similarity=0.047 Sum_probs=207.0
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
++.-+..++..+...|++.+|+.-|..+.+.++.+..++ ..-+..|...|+-.-|+.=|.+.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~ai------------------frRaT~yLAmGksk~al~Dl~rV 98 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAI------------------FRRATVYLAMGKSKAALQDLSRV 98 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHH------------------HHHHHHHhhhcCCccchhhHHHH
Confidence 456677899999999999999999998887665443333 33445688889999999888888
Q ss_pred hhCCCccCHHh-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCc
Q 048533 157 RVHNLMPHLHA-CTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADL 235 (591)
Q Consensus 157 ~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 235 (591)
++. +||... -..-...+.++|.+++|..-|+.+++..+. .. ....+..+.-..++-..+.
T Consensus 99 lel--KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s--~~---~~~eaqskl~~~~e~~~l~------------ 159 (504)
T KOG0624|consen 99 LEL--KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPS--NG---LVLEAQSKLALIQEHWVLV------------ 159 (504)
T ss_pred Hhc--CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCC--cc---hhHHHHHHHHhHHHHHHHH------------
Confidence 876 566433 233446777889999999999988876543 11 1122222222222222222
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcC-CCChhhHHHHHHHHH
Q 048533 236 FTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGA-TPNHVTYTTLIDGYC 314 (591)
Q Consensus 236 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~ 314 (591)
..+..+...|+...|+.....+.+.. +-|...+..-..+|...|++..|+.-++...+. ..++..+-.+...+.
T Consensus 160 ----~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y 234 (504)
T KOG0624|consen 160 ----QQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLY 234 (504)
T ss_pred ----HHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 23344567789999999999998863 337777888889999999999999888887764 345677777788888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 048533 315 RANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMK 394 (591)
Q Consensus 315 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 394 (591)
..|+.+.++..+++..+. .||....... | ..+.+..+.++.|.+ ....+++.++++
T Consensus 235 ~vgd~~~sL~~iRECLKl--dpdHK~Cf~~---Y---KklkKv~K~les~e~----------------~ie~~~~t~cle 290 (504)
T KOG0624|consen 235 TVGDAENSLKEIRECLKL--DPDHKLCFPF---Y---KKLKKVVKSLESAEQ----------------AIEEKHWTECLE 290 (504)
T ss_pred hhhhHHHHHHHHHHHHcc--CcchhhHHHH---H---HHHHHHHHHHHHHHH----------------HHhhhhHHHHHH
Confidence 999999999999998875 4554321111 1 112222222222222 123344555555
Q ss_pred HHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048533 395 VKNRMLEAGLMLDQF---TYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVS 471 (591)
Q Consensus 395 ~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 471 (591)
..+...+..+..... .+..+-.++...+++.+|++.-.++++.. +.|..++.--..+|.-...++.|+.-|+.+.+
T Consensus 291 ~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 291 AGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 555555543221122 22333444555666666666666665532 12255555556666666666666666666665
Q ss_pred CC
Q 048533 472 RG 473 (591)
Q Consensus 472 ~~ 473 (591)
.+
T Consensus 370 ~n 371 (504)
T KOG0624|consen 370 LN 371 (504)
T ss_pred cC
Confidence 43
No 89
>PF13041 PPR_2: PPR repeat family
Probab=99.16 E-value=1e-10 Score=75.98 Aligned_cols=49 Identities=49% Similarity=0.920 Sum_probs=30.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 301 PNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLC 349 (591)
Q Consensus 301 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 349 (591)
||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5566666666666666666666666666666666666666666666554
No 90
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.15 E-value=4.7e-07 Score=91.45 Aligned_cols=457 Identities=9% Similarity=-0.028 Sum_probs=228.9
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHH
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLS 134 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (591)
++...|+..|-.+++..|. -..+|..|+..|...-+..+|.+.|+++-+.+. .+....-
T Consensus 472 K~~~~al~ali~alrld~~---~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa------------------tdaeaaa 530 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVS---LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA------------------TDAEAAA 530 (1238)
T ss_pred hhHHHHHHHHHHHHhcccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc------------------hhhhhHH
Confidence 5577778888777776665 345666788888877777788888877766442 2223334
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCc-cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 048533 135 WLVIFYANLKMTQDGLQVFDQMRVHNLM-PHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKS 213 (591)
Q Consensus 135 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 213 (591)
..+..|++..+++.|..+.-...+..+. .-...|..+.-.+.+.++...|..-|+...+..+. |...|..+..+|.+.
T Consensus 531 a~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~s 609 (1238)
T KOG1127|consen 531 ASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPES 609 (1238)
T ss_pred HHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhc
Confidence 4555666777777776663333222111 01122333444555566666677777766666554 666677777777777
Q ss_pred CChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHH
Q 048533 214 SDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMERE------GISPDIVTYNSLIHGFCREGRMR 287 (591)
Q Consensus 214 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~g~~~ 287 (591)
|.+..|.++|.+..... |.+...-.-.....+..|.+.+|...+...... +..--..++..+...+...|=..
T Consensus 610 Gry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~ 688 (1238)
T KOG1127|consen 610 GRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQK 688 (1238)
T ss_pred CceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence 77777777776665542 112222222233345566677766666655432 00111122222222222223222
Q ss_pred HHHHHHHHhhc--------C-CCChhhHHHHHHHH-----------------------HhcCCH---H---HHHHHHHHH
Q 048533 288 EARRLFRDIKG--------A-TPNHVTYTTLIDGY-----------------------CRANDL---E---EALRLREVM 329 (591)
Q Consensus 288 ~A~~~~~~~~~--------~-~~~~~~~~~li~~~-----------------------~~~g~~---~---~a~~~~~~~ 329 (591)
+|..++++..+ . ..+...|-.+.++| -..+.. + -+.+.+-.-
T Consensus 689 kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~h 768 (1238)
T KOG1127|consen 689 KAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAH 768 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHH
Confidence 23322222111 0 11111121111111 111111 0 000111000
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----c----CCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048533 330 AAKGVYPGVVTYNSILRKLCK----E----GRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLE 401 (591)
Q Consensus 330 ~~~~~~p~~~~~~~ll~~~~~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 401 (591)
.+. ..+..+|..+...|.+ . .+...|...+...++.. ..+..+|+.|.-. ...|++.-+...|-+-..
T Consensus 769 lsl--~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~ 844 (1238)
T KOG1127|consen 769 LSL--AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRF 844 (1238)
T ss_pred HHH--hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhh
Confidence 000 1112233333333222 1 12234556666555431 2255556655444 555666666666655544
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCC
Q 048533 402 AGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFV----SRGLCVD 477 (591)
Q Consensus 402 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~ 477 (591)
.. +....+|..+...+.+..+++-|...|....... +.+...|-.........|+.-++..+|..-. ..|--++
T Consensus 845 se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~ 922 (1238)
T KOG1127|consen 845 SE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKK 922 (1238)
T ss_pred cc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccch
Confidence 43 2355667777777777888888888888777643 2233444333333445677777777776522 1233334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH----------HHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 478 VSVYRALIRRFCKKEKVDYAQRLFN----------LMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 478 ~~~~~~l~~~~~~~g~~~~a~~~~~----------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
..-|..........|+.++-+.-.+ +... +.+-....|...+...-+.+.+.+|..+..++..
T Consensus 923 f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rlig 995 (1238)
T KOG1127|consen 923 FQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIG 995 (1238)
T ss_pred hhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4444333334445555554443332 2222 2333457777788788888888887777666543
No 91
>PLN02789 farnesyltranstransferase
Probab=99.14 E-value=6.1e-08 Score=90.26 Aligned_cols=215 Identities=11% Similarity=0.036 Sum_probs=160.1
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCC-CchHHHHHHHHHHHcCCCCchHHHHHHHh
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNK-HFKSAQNMLEKIALRDFLSTPSVLNALVK 121 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 121 (591)
+...++.+....+..+.|+..+..+++.+|. +..+++....++...| .+++++..++++...++
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~---~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np------------ 103 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPG---NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP------------ 103 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCch---hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC------------
Confidence 4555666677778999999999999998887 6777887788888888 67999999999988663
Q ss_pred hcCCCCCccchHHHHHHHHHhcCCh--HHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 048533 122 IHDDPDGNSHVLSWLVIFYANLKMT--QDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVAN 199 (591)
Q Consensus 122 ~~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 199 (591)
.+..++.....++.+.|+. ++++.+++++++.+++ |..+|+...-++...|+++.+++.++++++.++. +
T Consensus 104 ------knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N 175 (320)
T PLN02789 104 ------KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-N 175 (320)
T ss_pred ------cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-c
Confidence 3344555554455555653 6789999999998887 8999999999999999999999999999998876 7
Q ss_pred HHHHHHHHHHHHcc---CCh----hhHHHHHHHHhhCCCCcCcccHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCC
Q 048533 200 IHLYNVLIHACCKS---SDV----DKVEKLLCEMEFKDVRADLFTYNTLIALYCKK----GMHYEALAVQDRMEREGISP 268 (591)
Q Consensus 200 ~~~~~~ll~~~~~~---g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~p 268 (591)
..+|+.....+.+. |.. +...++..+.+... +-|..+|+.+...+... +...+|.+.+.+..+.++ .
T Consensus 176 ~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~ 253 (320)
T PLN02789 176 NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-N 253 (320)
T ss_pred hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-C
Confidence 77777766665554 222 45677776766654 55778888888877763 344567777777665432 2
Q ss_pred CHHHHHHHHHHHHh
Q 048533 269 DIVTYNSLIHGFCR 282 (591)
Q Consensus 269 ~~~~~~~l~~~~~~ 282 (591)
+......|++.|+.
T Consensus 254 s~~al~~l~d~~~~ 267 (320)
T PLN02789 254 HVFALSDLLDLLCE 267 (320)
T ss_pred cHHHHHHHHHHHHh
Confidence 55667777777764
No 92
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=7.5e-06 Score=83.11 Aligned_cols=403 Identities=11% Similarity=0.140 Sum_probs=202.3
Q ss_pred hHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCC--ccCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 048533 113 PSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNL--MPHLHACTVLLNSLAKDRLTDMVWKVYKK 190 (591)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 190 (591)
..++.++++..-....++.-.+..+.++...+-+.+-+++++++.-.+. .-+...-+.|+-...+ -+..++.+..++
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~r 1045 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINR 1045 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHH
Confidence 3344455544434444555566666666666666666666666654321 1112222333332222 233344444444
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 048533 191 MVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDI 270 (591)
Q Consensus 191 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 270 (591)
+-..+. ..+...+...+-+++|..+|++.-. +..+.+.|+. ..+..+.|.+.-++.- .+
T Consensus 1046 LdnyDa-------~~ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~n------~p 1104 (1666)
T KOG0985|consen 1046 LDNYDA-------PDIAEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERCN------EP 1104 (1666)
T ss_pred hccCCc-------hhHHHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhhC------Ch
Confidence 433221 1233444455556666666655421 3333333333 2344455544444332 33
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048533 271 VTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCK 350 (591)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 350 (591)
..|+.+..+-.+.|.+.+|++-|-+.. |...|..+++...+.|.+++..+.+....+....|... ..++-+|++
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyikad----Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAk 1178 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKAD----DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAK 1178 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhcC----CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHH
Confidence 556666666666666666666665442 45556666666666666666666666655554444433 345566666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048533 351 EGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKEL 430 (591)
Q Consensus 351 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 430 (591)
.++..+.++++ .-|+......+.+-|...|.++.|.-+|... ..|..|...+...|++..|...
T Consensus 1179 t~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1179 TNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred hchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHH
Confidence 66665554443 2345555555555566666666555554322 2345555555555666555554
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048533 431 LFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGIL 510 (591)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 510 (591)
-+++ .+..+|-.+..+|...+.+..| +|...++.....-...++..|...|-+++.+.+++...... +
T Consensus 1243 aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-R 1310 (1666)
T KOG0985|consen 1243 ARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-R 1310 (1666)
T ss_pred hhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-H
Confidence 4332 2344555555555554443322 22223333445556666777777777777766666554320 1
Q ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCC------CCHHHHHHHHHhhhcchhHHHHHHHHH
Q 048533 511 GDSVIYTSLAYAYWRAGEPKACSDILDDMYRR-RLM------ITLKIYRSFSASYAKDNEILDLFWSHV 572 (591)
Q Consensus 511 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~------~~~~~~~~li~~~~~~~~~~~~~~~~~ 572 (591)
.....|+-|.-.|.+- ++++..+.++-...+ .++ -....|+.+.-.|.+..+++-+..-+|
T Consensus 1311 AHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~tmm 1378 (1666)
T KOG0985|consen 1311 AHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALTMM 1378 (1666)
T ss_pred HHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 1234455555555443 344444444433332 111 012356666666666666555444444
No 93
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=7.9e-09 Score=98.07 Aligned_cols=224 Identities=16% Similarity=0.101 Sum_probs=107.2
Q ss_pred CCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchH
Q 048533 54 CHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL 133 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (591)
.|+...|.-+|+.+.+.+|. ..++|..|+.+....++-..|+..++++.+.. |.+-.++
T Consensus 298 nG~L~~A~LafEAAVkqdP~---haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld------------------P~NleaL 356 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQDPQ---HAEAWQKLGITQAENENEQNAISALRRCLELD------------------PTNLEAL 356 (579)
T ss_pred cCCchHHHHHHHHHHhhChH---HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC------------------CccHHHH
Confidence 46666666666666666665 56666666666666666666666666666544 3344455
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKS 213 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 213 (591)
..|+..|+..|.-.+|++.|+.-+...++ |..+..+ ...+++..- ..+...
T Consensus 357 maLAVSytNeg~q~~Al~~L~~Wi~~~p~-----y~~l~~a-~~~~~~~~~-----------------------~s~~~~ 407 (579)
T KOG1125|consen 357 MALAVSYTNEGLQNQALKMLDKWIRNKPK-----YVHLVSA-GENEDFENT-----------------------KSFLDS 407 (579)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCcc-----chhcccc-CccccccCC-----------------------cCCCCH
Confidence 55566666666666666666665544322 0000000 000000000 000111
Q ss_pred CChhhHHHHHHHH-hhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048533 214 SDVDKVEKLLCEM-EFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRL 292 (591)
Q Consensus 214 g~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 292 (591)
..+....++|-++ ...+..+|..+...|.-.|--.|++++|.+.|+..+...+. |...||.|...++...+.++|+..
T Consensus 408 ~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsA 486 (579)
T KOG1125|consen 408 SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISA 486 (579)
T ss_pred HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHH
Confidence 1111222222222 22222244444555555555555555555555555543211 344555555555555555555555
Q ss_pred HHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 293 FRDIKGATPN-HVTYTTLIDGYCRANDLEEALRLREV 328 (591)
Q Consensus 293 ~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 328 (591)
|.+..+..|+ +.+...|.-.|...|.+++|.+.|-.
T Consensus 487 Y~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 487 YNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 5555555554 33444444445555555555554433
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=3.5e-07 Score=79.70 Aligned_cols=393 Identities=12% Similarity=0.094 Sum_probs=221.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHc
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNV-LIHACCK 212 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~~ 212 (591)
...+..+.+..++.+|++++..-.+++++ +......+..+|....++..|-..|+++...- |...-|.. -...+-+
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLYK 90 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHHH
Confidence 33444456777888888888887777655 77778888888888888888888888887653 33333322 2345566
Q ss_pred cCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048533 213 SSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRL 292 (591)
Q Consensus 213 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 292 (591)
.+.+..|+++...|.... ..-..+...-.......+++..+..+.++....| +..+.+.......+.|+++.|.+-
T Consensus 91 A~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred hcccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHH
Confidence 778888888887776431 0111112222223345677777877777766432 444555555566778888888888
Q ss_pred HHHhhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------CCHH--------HHHHHH----
Q 048533 293 FRDIKGA--TPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVY-------------PGVV--------TYNSIL---- 345 (591)
Q Consensus 293 ~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-------------p~~~--------~~~~ll---- 345 (591)
|+...+. -.....|+.. -+..+.++++.|++...++.++|++ ||.. .-+.++
T Consensus 167 FqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 8887652 1223445543 4455678888888888888777643 1211 112233
Q ss_pred ---HHHHhcCCHHHHHHHHHHHHhC-CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048533 346 ---RKLCKEGRIRDANRLLNEMNEK-KIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKA 421 (591)
Q Consensus 346 ---~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 421 (591)
..+.+.|+++.|.+.+-.|.-+ ....|++|...+.-.- ..+++.+..+-+.-+....+ ....||..++-.||++
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKN 323 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhh
Confidence 2345678888888887777433 2234666665554322 23445555555555555543 4567888888899998
Q ss_pred CCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---HH
Q 048533 422 KEMDIAKELLFGMLDAGF-SPSYCSYSWLVDGYC-NKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKV---DY 496 (591)
Q Consensus 422 ~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~ 496 (591)
.-++.|-.++.+-....+ -.+...|+. +.++. -.-..+++.+-++.+.+. +.-.......-+..-....+- ..
T Consensus 324 eyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La~~-l~~kLRklAi~vQe~r~~~dd~a~R~ 401 (459)
T KOG4340|consen 324 EYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLAGM-LTEKLRKLAIQVQEARHNRDDEAIRK 401 (459)
T ss_pred HHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 888888887765332111 122333333 33332 344566666655554332 000000111111111111111 11
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 497 AQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 497 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
+++-+++..+. -..+..+-.+.|.+..++..+.++|..-.+.
T Consensus 402 ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 402 AVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 22222222221 1122334445566788888888888877664
No 95
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.08 E-value=4e-07 Score=91.99 Aligned_cols=366 Identities=9% Similarity=-0.036 Sum_probs=203.3
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKI 122 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (591)
....|+.+|....+...|...|+.|-+.+|. +..+....+..|++...++.|..+.-...+..+--
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDat---daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~----------- 559 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDAT---DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAF----------- 559 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCch---hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHH-----------
Confidence 4466677776656788999999999988776 77777789999999999999999854443322100
Q ss_pred cCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 048533 123 HDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHL 202 (591)
Q Consensus 123 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 202 (591)
....-+....-.|...++..+|+.-|+...+.+++ |...|..+..+|...|.+..|.++|.++....+......
T Consensus 560 -----~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 560 -----ACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred -----HHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 00011222444588889999999999999998887 889999999999999999999999998887643311111
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHhhCC------CCcCcccHHHHHHHHHhcCChhHHHHHHHHHH-------HCCCCCC
Q 048533 203 YNVLIHACCKSSDVDKVEKLLCEMEFKD------VRADLFTYNTLIALYCKKGMHYEALAVQDRME-------REGISPD 269 (591)
Q Consensus 203 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-------~~~~~p~ 269 (591)
|. ..-.-+..|++.+|...+..+...- ...-..++-.+...+...|-...+.+.+++-+ ......+
T Consensus 634 fk-~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~ 712 (1238)
T KOG1127|consen 634 FK-EAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSD 712 (1238)
T ss_pred HH-HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 21 2233456788888888887765421 00012222223333333343333333333322 1111112
Q ss_pred HHHHHHHHHHH-------------------H----hcCCH---H---HHHHHHHHhhcCCCChhhHHHHHHHHHh----c
Q 048533 270 IVTYNSLIHGF-------------------C----REGRM---R---EARRLFRDIKGATPNHVTYTTLIDGYCR----A 316 (591)
Q Consensus 270 ~~~~~~l~~~~-------------------~----~~g~~---~---~A~~~~~~~~~~~~~~~~~~~li~~~~~----~ 316 (591)
...|-.+.++| . +.+.. + -+.+.+-.-.....+..+|..++..|.+ .
T Consensus 713 ~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l 792 (1238)
T KOG1127|consen 713 RLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLL 792 (1238)
T ss_pred HHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHc
Confidence 22222111111 1 11111 1 0111111111122234455555444433 1
Q ss_pred C----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHH
Q 048533 317 N----DLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASA 392 (591)
Q Consensus 317 g----~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 392 (591)
+ +...|...+.+..+.. ..+..+|+.|. .....|.+.-+...|-.-.... +....+|..+.-.+.+..|++.|
T Consensus 793 ~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLG-Vlsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A 869 (1238)
T KOG1127|consen 793 GETMKDACTAIRCCKKAVSLC-ANNEGLWNALG-VLSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHA 869 (1238)
T ss_pred CCcchhHHHHHHHHHHHHHHh-hccHHHHHHHH-Hhhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHh
Confidence 1 2345666776666542 22444455443 3355566666666655544432 23556666666667777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 393 MKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFG 433 (591)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 433 (591)
...|.......+ .+...|..........|+.-++..+|..
T Consensus 870 ~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 870 EPAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hHHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 777766655421 2333444333333445555555555554
No 96
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.4e-06 Score=82.46 Aligned_cols=408 Identities=15% Similarity=0.057 Sum_probs=248.0
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccC
Q 048533 85 IHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPH 164 (591)
Q Consensus 85 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 164 (591)
+.+.+..|+++.|+.+|-..+... |.+-..|+.-..+|+..|++++|++=-.+.++.++. -
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~------------------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w 69 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS------------------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-W 69 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC------------------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-h
Confidence 456678899999999999988764 335566777788899999999999877777776543 4
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHH
Q 048533 165 LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIAL 244 (591)
Q Consensus 165 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 244 (591)
...|.....++.-.|++++|+..|.+-++.... +...++.+..++.. +.+. +.. ..++..|..+..-
T Consensus 70 ~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~----~~~~-----~~~---~~~p~~~~~l~~~ 136 (539)
T KOG0548|consen 70 AKGYSRKGAALFGLGDYEEAILAYSEGLEKDPS-NKQLKTGLAQAYLE----DYAA-----DQL---FTKPYFHEKLANL 136 (539)
T ss_pred hhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhH----HHHh-----hhh---ccCcHHHHHhhcC
Confidence 668999999999999999999999999987654 66677777776611 1111 100 0011112111110
Q ss_pred HHhcC-ChhHHH-HHHHHHHHCCCCCC-HHHH---HHHHHHHHhcCCHHH-H---HHHH---------HHhhcCCC----
Q 048533 245 YCKKG-MHYEAL-AVQDRMEREGISPD-IVTY---NSLIHGFCREGRMRE-A---RRLF---------RDIKGATP---- 301 (591)
Q Consensus 245 ~~~~g-~~~~a~-~~~~~~~~~~~~p~-~~~~---~~l~~~~~~~g~~~~-A---~~~~---------~~~~~~~~---- 301 (591)
-..++ ..+.+. .++..+.+. |+ ...| ..++.+.......+. . .... .......|
T Consensus 137 p~t~~~~~~~~~~~~l~~~~~~---p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d 213 (539)
T KOG0548|consen 137 PLTNYSLSDPAYVKILEIIQKN---PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIED 213 (539)
T ss_pred hhhhhhhccHHHHHHHHHhhcC---cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccch
Confidence 00000 000111 111111110 10 0000 001111000000000 0 0000 00000001
Q ss_pred ---------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 048533 302 ---------NHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPD 372 (591)
Q Consensus 302 ---------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 372 (591)
-..-...+.....+..++..|.+.+....... -+..-++....++...|.+.+.........+.|.. .
T Consensus 214 ~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~ 290 (539)
T KOG0548|consen 214 NTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-L 290 (539)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-H
Confidence 01123456677777888889998888888764 35555666777788888887777776666655422 1
Q ss_pred hHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H
Q 048533 373 NVTC-------NTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSY-C 444 (591)
Q Consensus 373 ~~~~-------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~ 444 (591)
..-| ..+..+|.+.++.+.++..|.+.......|+.. .+....+++....+...-.+ |.. .
T Consensus 291 rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~--pe~A~ 359 (539)
T KOG0548|consen 291 RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYIN--PEKAE 359 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhC--hhHHH
Confidence 1222 223446666778888888888876654333221 22333444444444433322 332 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 048533 445 SYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYW 524 (591)
Q Consensus 445 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 524 (591)
-...-...+.+.|++..|...+.++++..+. |...|....-+|.+.|.+..|+.=.+..++.+ ++....|..-..++.
T Consensus 360 e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 360 EEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHH
Confidence 1222256677899999999999999998754 89999999999999999999999988888762 223466766777888
Q ss_pred HcCChhHHHHHHHHHHHCC
Q 048533 525 RAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 525 ~~g~~~~A~~~~~~~~~~~ 543 (591)
...++++|.+.|++.++.+
T Consensus 438 ~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 438 AMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 8889999999999999975
No 97
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=1.7e-06 Score=85.74 Aligned_cols=216 Identities=14% Similarity=0.179 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC------chHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHH
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLS------TPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQ 151 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 151 (591)
-.+|+.-+.-+-..++.+.|++.|++........ ++.-++..++ ...++..|.|-..-.-..|+.+.|+.
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~----~~~d~~L~~WWgqYlES~GemdaAl~ 933 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVR----RKRDESLYSWWGQYLESVGEMDAALS 933 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHH----hccchHHHHHHHHHHhcccchHHHHH
Confidence 4566777777777788888888887644322111 1111222222 23456788888888888899999999
Q ss_pred HHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCC
Q 048533 152 VFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDV 231 (591)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 231 (591)
+|..+.. |-.+.+..+-+|+.++|-++-++- -|....-.+.+.|-..|++.+|..+|.+..
T Consensus 934 ~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---- 994 (1416)
T KOG3617|consen 934 FYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ---- 994 (1416)
T ss_pred HHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH----
Confidence 8876643 566777888888888888877653 255555567888888899999888887764
Q ss_pred CcCcccHHHHHHHHHhcCCh---------------hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048533 232 RADLFTYNTLIALYCKKGMH---------------YEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDI 296 (591)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~---------------~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 296 (591)
++...|+.|-.++.- -.|-.+|++. |.. +...+..|.+.|.+.+|+++--.-
T Consensus 995 -----afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~t 1061 (1416)
T KOG3617|consen 995 -----AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRT 1061 (1416)
T ss_pred -----HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhh
Confidence 233344433322221 2222333321 111 122344566777777766654322
Q ss_pred hc------------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048533 297 KG------------ATPNHVTYTTLIDGYCRANDLEEALRLREVM 329 (591)
Q Consensus 297 ~~------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 329 (591)
.+ ...|....+.-.+.++...++++|..++-..
T Consensus 1062 qQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1062 QQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred cccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 11 2234455555555666666666666655443
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=3.1e-07 Score=79.99 Aligned_cols=357 Identities=14% Similarity=0.084 Sum_probs=187.1
Q ss_pred ccccccCChHHHHHHHHHHhccccch---hcCCCCCCCCChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHH
Q 048533 3 SLVALNSDTKFIKTISAIMLKGHWAK---LLNPNIASSLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQ 79 (591)
Q Consensus 3 ~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~ 79 (591)
+++.+++ -.+..+|.++++..++.+ .+.......|.+..-..+|+..|.+..++..|-+.|+......|. -..
T Consensus 4 ~g~~i~E-Geftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~---~~q 79 (459)
T KOG4340|consen 4 SGAQIPE-GEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE---LEQ 79 (459)
T ss_pred ccccCCC-CchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH---HHH
Confidence 4444444 234455555555555442 222223334445555566677777667777788888777665554 122
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048533 80 SHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVH 159 (591)
Q Consensus 80 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 159 (591)
-.+.-++.+.+.+.+.+|..+...|... +.+.+..++ .-.......+++..+..+.++....
T Consensus 80 YrlY~AQSLY~A~i~ADALrV~~~~~D~-----~~L~~~~lq-------------LqaAIkYse~Dl~g~rsLveQlp~e 141 (459)
T KOG4340|consen 80 YRLYQAQSLYKACIYADALRVAFLLLDN-----PALHSRVLQ-------------LQAAIKYSEGDLPGSRSLVEQLPSE 141 (459)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhcCC-----HHHHHHHHH-------------HHHHHhcccccCcchHHHHHhccCC
Confidence 2223466777778888888777666542 122222222 1122234556677777777666543
Q ss_pred CCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCccc--
Q 048533 160 NLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFT-- 237 (591)
Q Consensus 160 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-- 237 (591)
| +..+.+.......+.|+++.|.+-|+...+.+--.....|+..+ +..+.|+++.|+++..+++.+|++..+..
T Consensus 142 n---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgI 217 (459)
T KOG4340|consen 142 N---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGI 217 (459)
T ss_pred C---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCc
Confidence 2 33344444455556777777777777777654333455565444 34456777777777777777765432221
Q ss_pred --HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc---CCCChhhHHHHHHH
Q 048533 238 --YNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKG---ATPNHVTYTTLIDG 312 (591)
Q Consensus 238 --~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~li~~ 312 (591)
-...+++ ...|+. .. |-.++ -...+|.-...+.+.|+++.|.+.+.+|+. .+.|.++...+.-.
T Consensus 218 Gm~tegiDv-rsvgNt---~~----lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~ 286 (459)
T KOG4340|consen 218 GMTTEGIDV-RSVGNT---LV----LHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM 286 (459)
T ss_pred cceeccCch-hcccch---HH----HHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh
Confidence 0000000 000000 00 00000 123445555667777888888888877753 34455555444322
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChHHHHHHHHHHH-HcCCHH
Q 048533 313 YCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIA-PDNVTCNTLINAYC-KIGDTA 390 (591)
Q Consensus 313 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~-~~~~~~ 390 (591)
= ..+++.+..+-+..+...+. ....||..++-.||+..-++-|-.++.+-...... .+...|+ |+.++. -.-..+
T Consensus 287 n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pE 363 (459)
T KOG4340|consen 287 N-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPE 363 (459)
T ss_pred c-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHH
Confidence 2 23445555555555555533 34567777777888887777777776653332111 1333333 333332 233455
Q ss_pred HHHHHHHHH
Q 048533 391 SAMKVKNRM 399 (591)
Q Consensus 391 ~a~~~~~~~ 399 (591)
++.+-++.+
T Consensus 364 ea~KKL~~L 372 (459)
T KOG4340|consen 364 EAFKKLDGL 372 (459)
T ss_pred HHHHHHHHH
Confidence 555544443
No 99
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.00 E-value=4.3e-08 Score=90.09 Aligned_cols=250 Identities=14% Similarity=0.090 Sum_probs=152.8
Q ss_pred HHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhH
Q 048533 140 YANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKV 219 (591)
Q Consensus 140 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 219 (591)
+.-.|++..++.-.+ ....+...+......+.+++...|+++.++ .++.+.. .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 445688888887666 334443445556677778888888876543 3333333 55655555555444443455566
Q ss_pred HHHHHHHhhCCCCc-CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 048533 220 EKLLCEMEFKDVRA-DLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKG 298 (591)
Q Consensus 220 ~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 298 (591)
..-+++........ +.........++...|++++|++++... .+.......+..|.+.++++.|.+.++.+.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 65555544333221 2222223334555678888888877542 3566677778888888888888888888887
Q ss_pred CCCChhhHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHH
Q 048533 299 ATPNHVTYT---TLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVT 375 (591)
Q Consensus 299 ~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 375 (591)
...|....+ +.+..+...+.+++|..+|+++... ..+++.+.+.+..+....|++++|.+++.+..+.+. -++.+
T Consensus 160 ~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~ 237 (290)
T PF04733_consen 160 IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDT 237 (290)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHH
T ss_pred cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHH
Confidence 655544332 2333333344688888888887654 456777788888888888888888888888776543 35667
Q ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHC
Q 048533 376 CNTLINAYCKIGDT-ASAMKVKNRMLEA 402 (591)
Q Consensus 376 ~~~li~~~~~~~~~-~~a~~~~~~~~~~ 402 (591)
+..++.+....|+. +.+.+.+.++...
T Consensus 238 LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 238 LANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 77777777777776 5566677776654
No 100
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=3.5e-05 Score=78.44 Aligned_cols=384 Identities=15% Similarity=0.196 Sum_probs=261.1
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
++.......++...+-..+-+++++++.-.+.. +..+.+.-+.|+-.-. .-+..+..++.+++.
T Consensus 984 Pe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~---------------Fse~~nLQnLLiLtAi-kad~trVm~YI~rLd 1047 (1666)
T KOG0985|consen 984 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSV---------------FSENRNLQNLLILTAI-KADRTRVMEYINRLD 1047 (1666)
T ss_pred hHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcc---------------cccchhhhhhHHHHHh-hcChHHHHHHHHHhc
Confidence 444455677888899999999999998764421 1222333333333333 344556667777766
Q ss_pred hCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCccc
Q 048533 158 VHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFT 237 (591)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 237 (591)
..+. |+ +...+...+-+++|..+|++.. .+....+.|+. ..+.++.|.++-++.. ....
T Consensus 1048 nyDa-~~------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~v 1106 (1666)
T KOG0985|consen 1048 NYDA-PD------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAV 1106 (1666)
T ss_pred cCCc-hh------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHH
Confidence 5542 22 4556667778899999998763 35556666654 3577888888877764 3468
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcC
Q 048533 238 YNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRAN 317 (591)
Q Consensus 238 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g 317 (591)
|..+..+-.+.|...+|++-|-+.. |+..|..+++...+.|.+++-.+++...++.......=+.++-+|.+.+
T Consensus 1107 WsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~ 1180 (1666)
T KOG0985|consen 1107 WSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTN 1180 (1666)
T ss_pred HHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhc
Confidence 9999999999999999988875432 6788999999999999999999999888764444455567888999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 048533 318 DLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKN 397 (591)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 397 (591)
+..+..+++ .-|+......+..-|...|.++.|.-+|.. ...|..|...+...|+++.|...-+
T Consensus 1181 rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1181 RLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred hHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 988776654 247777788888888889999888877754 3457888888888899888876654
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 048533 398 RMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVD 477 (591)
Q Consensus 398 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 477 (591)
+. .+..+|..+-.+|...+.+.-| +|-..++.....-+.-++..|...|-+++.+.+++...... +..
T Consensus 1245 KA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAH 1312 (1666)
T KOG0985|consen 1245 KA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAH 1312 (1666)
T ss_pred hc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHH
Confidence 43 3667888888888877766544 23333344455567778888888899888888887766331 124
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC------cCHHHHHHHHHHHHHcCChhHHH
Q 048533 478 VSVYRALIRRFCKKEKVDYAQRLFNLMQGN-GIL------GDSVIYTSLAYAYWRAGEPKACS 533 (591)
Q Consensus 478 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~------p~~~~~~~l~~~~~~~g~~~~A~ 533 (591)
...|+.|.-.|++- ++++..+-++..-.+ +++ .....|.-++-.|.+-..++.|.
T Consensus 1313 MgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1313 MGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 45666666666654 345444444433221 111 12346777777777666666553
No 101
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.00 E-value=9.2e-07 Score=86.42 Aligned_cols=375 Identities=13% Similarity=0.065 Sum_probs=204.6
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC--
Q 048533 83 TMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN-- 160 (591)
Q Consensus 83 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-- 160 (591)
..++.|.+.|...+|.+....-.. ...+..++..+... -.....|......|-+..++++|++.|.+-...+
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~a----lik~elydkagdlfeki~d~dkale~fkkgdaf~ka 693 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAA----LIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKA 693 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHH----HHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHH
Confidence 346667777777776654321111 01111222111110 0011344445555666666666666665422111
Q ss_pred -------CccCHHhH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCC
Q 048533 161 -------LMPHLHAC-TVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVR 232 (591)
Q Consensus 161 -------~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 232 (591)
++..+... ..-...+...|+++.|+..|-+.. .....+.+......+.+|+.+++.+..+.
T Consensus 694 ielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk-- 762 (1636)
T KOG3616|consen 694 IELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK-- 762 (1636)
T ss_pred HHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--
Confidence 11111111 112233445566666666554332 12234556667788888888888887663
Q ss_pred cCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 048533 233 ADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDG 312 (591)
Q Consensus 233 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~ 312 (591)
.-...|..+...|...|+++.|.++|-+. ..++-.|.+|.+.|+|+.|.++-.+..+.......|-+-..-
T Consensus 763 ~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaed 833 (1636)
T KOG3616|consen 763 TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAED 833 (1636)
T ss_pred cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHh
Confidence 23456777888888889999888888543 235557788889999999988888887766667777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHH
Q 048533 313 YCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASA 392 (591)
Q Consensus 313 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 392 (591)
+-+.|++.+|.++|-... .|+ ..|.+|-+.|..++.+++..+-... .-..+...+..-+-..|+...|
T Consensus 834 ldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaa 901 (1636)
T KOG3616|consen 834 LDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAA 901 (1636)
T ss_pred HHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHH
Confidence 778888888887774433 234 3456677777777777776654321 1223445556666667777776
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--------------HHCCCCCCHH------HHHHHHHH
Q 048533 393 MKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGM--------------LDAGFSPSYC------SYSWLVDG 452 (591)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------------~~~~~~~~~~------~~~~l~~~ 452 (591)
..-|-+.-+ |.+.+..|-..+-|++|.++-+.- ...|-..-.. .+..-++.
T Consensus 902 e~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~ 972 (1636)
T KOG3616|consen 902 EEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDF 972 (1636)
T ss_pred HHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhh
Confidence 665543321 333344444444444444432210 0000000000 11122333
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 453 YCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGN 507 (591)
Q Consensus 453 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 507 (591)
.+..+.++-|..+-+-..+... ..+...+.-.+-..|++++|-+-|-+.++.
T Consensus 973 a~d~~afd~afdlari~~k~k~---~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 973 AADNCAFDFAFDLARIAAKDKM---GEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred hhcccchhhHHHHHHHhhhccC---ccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 4455566666666555444322 122233344456788888888877777654
No 102
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=1.5e-05 Score=79.37 Aligned_cols=171 Identities=13% Similarity=0.154 Sum_probs=112.8
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 048533 83 TMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLM 162 (591)
Q Consensus 83 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 162 (591)
.++......|..++|..+|++..+.+ .|-..|-..|++++|+++-+.-.+...
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~D--------------------------LlNKlyQs~g~w~eA~eiAE~~DRiHL- 857 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRYD--------------------------LLNKLYQSQGMWSEAFEIAETKDRIHL- 857 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH--------------------------HHHHHHHhcccHHHHHHHHhhccceeh-
Confidence 44555567899999999999887632 333457778999999988765444333
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHH----------HCCC---------CCCHHHHHHHHHHHHccCChhhHHHHH
Q 048533 163 PHLHACTVLLNSLAKDRLTDMVWKVYKKMV----------QLGV---------VANIHLYNVLIHACCKSSDVDKVEKLL 223 (591)
Q Consensus 163 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----------~~~~---------~~~~~~~~~ll~~~~~~g~~~~a~~~~ 223 (591)
..+|......+-..++.+.|++.|++.- +..+ ..|...|.....-+-..|+.+.|+.+|
T Consensus 858 --r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y 935 (1416)
T KOG3617|consen 858 --RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFY 935 (1416)
T ss_pred --hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHH
Confidence 3467777777888888888888887532 1111 113344444445455667777777777
Q ss_pred HHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048533 224 CEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIK 297 (591)
Q Consensus 224 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 297 (591)
.... -|..+++..|-.|+.++|-++-++- -|......+.+.|-..|++.+|...|.+..
T Consensus 936 ~~A~---------D~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 936 SSAK---------DYFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHhh---------hhhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6654 2455666666677777777665542 245555667778888888888888877654
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.98 E-value=7.7e-06 Score=90.39 Aligned_cols=335 Identities=13% Similarity=0.060 Sum_probs=212.0
Q ss_pred HHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC------CCC--HHHHHHHHHHH
Q 048533 209 ACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGI------SPD--IVTYNSLIHGF 280 (591)
Q Consensus 209 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~------~p~--~~~~~~l~~~~ 280 (591)
.....|+++.+..+++.+.......+..........+...|+++++...+......-- .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777776653221112333334455566778999999998887754310 111 11222334556
Q ss_pred HhcCCHHHHHHHHHHhhcCCCC--h----hhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHH
Q 048533 281 CREGRMREARRLFRDIKGATPN--H----VTYTTLIDGYCRANDLEEALRLREVMAAK----GVY-PGVVTYNSILRKLC 349 (591)
Q Consensus 281 ~~~g~~~~A~~~~~~~~~~~~~--~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-p~~~~~~~ll~~~~ 349 (591)
...|++++|...++......+. . ...+.+...+...|++++|...+.+.... |.. +...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999887642221 1 23455666778899999999998887643 111 11234455566778
Q ss_pred hcCCHHHHHHHHHHHHhC----CCC--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHHHHH
Q 048533 350 KEGRIRDANRLLNEMNEK----KIA--P-DNVTCNTLINAYCKIGDTASAMKVKNRMLEAG--LML--DQFTYKALIHGF 418 (591)
Q Consensus 350 ~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~ 418 (591)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999998876542 211 1 22334455667778899999999988875531 112 233444566677
Q ss_pred HhcCCHHHHHHHHHHHHHC--CCCCCHHH--H--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 048533 419 CKAKEMDIAKELLFGMLDA--GFSPSYCS--Y--SWLVDGYCNKNNEEALLKLLDEFVSRGLCVD---VSVYRALIRRFC 489 (591)
Q Consensus 419 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~--~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 489 (591)
...|+++.|...+...... ........ . ...+..+...|+.+.|...+........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 8899999999998887542 11111111 0 1122444568899999999877654321111 112446677788
Q ss_pred hcCCHHHHHHHHHHHHhC----CCCcC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 490 KKEKVDYAQRLFNLMQGN----GILGD-SVIYTSLAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 490 ~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
..|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.++.+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899999999999988752 33322 2466778888999999999999999998863
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=1.4e-07 Score=89.78 Aligned_cols=252 Identities=13% Similarity=0.039 Sum_probs=195.2
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhh
Q 048533 139 FYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDK 218 (591)
Q Consensus 139 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 218 (591)
-+.+.|++.+|.-.|+..++.++. +..+|..|.......++-..|+..+.++.+..+. +..+...|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 477889999999999999999877 8999999999999999999999999999998776 78888888889999999999
Q ss_pred HHHHHHHHhhCCCC--------cCcccHHHHHHHHHhcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048533 219 VEKLLCEMEFKDVR--------ADLFTYNTLIALYCKKGMHYEALAVQDRME-REGISPDIVTYNSLIHGFCREGRMREA 289 (591)
Q Consensus 219 a~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A 289 (591)
|...++..+....+ ++...-.. ..+.....+....++|-++. ..+..+|+.+...|.-.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99999988654310 00000000 12223334455566665554 445457888888999999999999999
Q ss_pred HHHHHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 290 RRLFRDIKGATPN-HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPG-VVTYNSILRKLCKEGRIRDANRLLNEMNEK 367 (591)
Q Consensus 290 ~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 367 (591)
...|+......|+ ...||.|...+....+.++|+..|.+.++. .|+ +.+...|.-.|...|.+++|.+.|-..+..
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999999987775 778999999999999999999999999986 555 344555666789999999999988765432
Q ss_pred ---------CCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 048533 368 ---------KIAPDNVTCNTLINAYCKIGDTASAMKVK 396 (591)
Q Consensus 368 ---------~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 396 (591)
+..++...|..|=.++.-.++.|.+....
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 12235578888888888888887655544
No 105
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.95 E-value=4.7e-05 Score=72.41 Aligned_cols=427 Identities=11% Similarity=0.110 Sum_probs=239.8
Q ss_pred hhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChH
Q 048533 68 ESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQ 147 (591)
Q Consensus 68 ~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 147 (591)
++.+|. ++.+|..|++-+..+ .+++++..++++...- |..+.++..-+..-.+..+++
T Consensus 13 ie~nP~---di~sw~~lire~qt~-~~~~~R~~YEq~~~~F------------------P~s~r~W~~yi~~El~skdfe 70 (656)
T KOG1914|consen 13 IEENPY---DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF------------------PSSPRAWKLYIERELASKDFE 70 (656)
T ss_pred HhcCCc---cHHHHHHHHHHHccC-CHHHHHHHHHHHhccC------------------CCCcHHHHHHHHHHHHhhhHH
Confidence 333665 999999999877766 9999999999987643 445566777788888899999
Q ss_pred HHHHHHHHHhhCCCccCHHhHHHHHHHHHhc-CChhH----HHHHHHHHH-HCCCCCC-HHHHHHHHHHHH---------
Q 048533 148 DGLQVFDQMRVHNLMPHLHACTVLLNSLAKD-RLTDM----VWKVYKKMV-QLGVVAN-IHLYNVLIHACC--------- 211 (591)
Q Consensus 148 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~----a~~~~~~~~-~~~~~~~-~~~~~~ll~~~~--------- 211 (591)
...++|.+.+..- .+...|...+....+. ++... ..+.|+... +.|+.+- ...|+..+..+-
T Consensus 71 ~VEkLF~RCLvkv--LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~e 148 (656)
T KOG1914|consen 71 SVEKLFSRCLVKV--LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYE 148 (656)
T ss_pred HHHHHHHHHHHHH--hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHH
Confidence 9999999988763 3677788777765542 33322 233344433 4454332 234555554332
Q ss_pred ccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048533 212 KSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARR 291 (591)
Q Consensus 212 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 291 (591)
...+.+...++++++...-+ ++.++.+.-|....+. .|..|-..++. -+...+..|.+
T Consensus 149 e~QRI~~vRriYqral~tPm-----------------~nlEkLW~DY~~fE~~---IN~~tarK~i~--e~s~~Ym~AR~ 206 (656)
T KOG1914|consen 149 ENQRITAVRRIYQRALVTPM-----------------HNLEKLWKDYEAFEQE---INIITARKFIG--ERSPEYMNARR 206 (656)
T ss_pred HHHHHHHHHHHHHHHhcCcc-----------------ccHHHHHHHHHHHHHH---HHHHHHHHHHH--hhCHHHHHHHH
Confidence 22344556667777654311 1112222222211110 11111111110 01122333333
Q ss_pred HHHHhhc-----------CCCC--------hhhHHHHHHHHHhcC------C--HHHHHHHHHHHH-HCCCCCCHHHH-H
Q 048533 292 LFRDIKG-----------ATPN--------HVTYTTLIDGYCRAN------D--LEEALRLREVMA-AKGVYPGVVTY-N 342 (591)
Q Consensus 292 ~~~~~~~-----------~~~~--------~~~~~~li~~~~~~g------~--~~~a~~~~~~~~-~~~~~p~~~~~-~ 342 (591)
+++++.. ++|. ...|-.+|..-...+ . -....-.+++.. -.+..|+.... .
T Consensus 207 ~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s 286 (656)
T KOG1914|consen 207 VYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYS 286 (656)
T ss_pred HHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3333321 0000 001212221111000 0 001111122211 11223332211 0
Q ss_pred HH----HHHHHhcCC-------HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCH
Q 048533 343 SI----LRKLCKEGR-------IRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIG---DTASAMKVKNRMLEAGLMLDQ 408 (591)
Q Consensus 343 ~l----l~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~ 408 (591)
.. -..+...|+ -+++..+++..++.-...+..+|..+...--..- ..+....+++++...-..--.
T Consensus 287 ~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t 366 (656)
T KOG1914|consen 287 MYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT 366 (656)
T ss_pred HHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc
Confidence 00 111222232 3456666665554322223334443333221111 255566666666554322223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 409 FTYKALIHGFCKAKEMDIAKELLFGMLDAGFSP-SYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRR 487 (591)
Q Consensus 409 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 487 (591)
.+|..++..-.+..-++.|..+|.++.+.+..+ +..+.++++..|| .++.+-|.++|+.-++. ..-++.-....+..
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~Yldf 444 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDF 444 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHH
Confidence 457777777778888999999999999877666 6677788887776 57888999999887775 33355666677888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcCH--HHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 488 FCKKEKVDYAQRLFNLMQGNGILGDS--VIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 488 ~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
+...++-..++.+|++....++.|+. .+|..+++--..-|+.+.+.++-+++...
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 88889999999999999988666665 78999999999999999999888887664
No 106
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.95 E-value=8.2e-05 Score=75.17 Aligned_cols=225 Identities=13% Similarity=0.047 Sum_probs=149.4
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHH
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLS 134 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (591)
+++.+|+.......+..|+ ...+...-+-.+.+.|+.++|..+++...... +.+..++.
T Consensus 23 ~qfkkal~~~~kllkk~Pn---~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~------------------~~D~~tLq 81 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPN---ALYAKVLKALSLFRLGKGDEALKLLEALYGLK------------------GTDDLTLQ 81 (932)
T ss_pred HHHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHhcCchhHHHHHhhhccCC------------------CCchHHHH
Confidence 7899999999999998887 66665566778899999999998887765433 22344566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 048533 135 WLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSS 214 (591)
Q Consensus 135 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 214 (591)
.+-.+|...++.++|..+|++..... |+......+..+|.+.+.+.+-.++--++.+.- +-+...+=+++......-
T Consensus 82 ~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~-pk~~yyfWsV~Slilqs~ 158 (932)
T KOG2053|consen 82 FLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNF-PKRAYYFWSVISLILQSI 158 (932)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcccchHHHHHHHHHHhc
Confidence 67778999999999999999999874 568888888899999888766444444443322 223333333444433221
Q ss_pred -C---------hhhHHHHHHHHhhCC-CCcCcccHHHHHHHHHhcCChhHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHh
Q 048533 215 -D---------VDKVEKLLCEMEFKD-VRADLFTYNTLIALYCKKGMHYEALAVQD-RMEREGISPDIVTYNSLIHGFCR 282 (591)
Q Consensus 215 -~---------~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~-~~~~~~~~p~~~~~~~l~~~~~~ 282 (591)
. ..-|.+.++.+.+.+ .-.+..-...-...+...|.+++|++++. ...+.-...+...-+.-+..+..
T Consensus 159 ~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~ 238 (932)
T KOG2053|consen 159 FSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKL 238 (932)
T ss_pred cCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 1 223566667766554 11122223333455667889999999983 44443333344455566777888
Q ss_pred cCCHHHHHHHHHHhhcCCCCh
Q 048533 283 EGRMREARRLFRDIKGATPNH 303 (591)
Q Consensus 283 ~g~~~~A~~~~~~~~~~~~~~ 303 (591)
.+++.+..++-.++....+|.
T Consensus 239 l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 239 LNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred hcChHHHHHHHHHHHHhCCcc
Confidence 888888888887776544543
No 107
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.94 E-value=4.9e-05 Score=72.28 Aligned_cols=175 Identities=14% Similarity=0.116 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048533 389 TASAMKVKNRMLEAGLMLDQFTYKALIHGFC---KAKEMDIAKELLFGMLDA-GFSPSYCSYSWLVDGYCNKNNEEALLK 464 (591)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~ 464 (591)
.+++..+++.....-..-+..+|..+..--- .....+.....++++... ...|+ .+|..++..-.+..-+..|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHH
Confidence 3556666666554422223344444333211 112356666777776653 23344 467777888888888999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 465 LLDEFVSRGLCV-DVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 465 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
+|.++.+.+..+ +..++++++.-|+ +++.+.|.++|+.-.++ ...++..-...++-+...|+-..|..+|++....+
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 999999887666 7788888888665 68899999999987765 33344555678888999999999999999999997
Q ss_pred CCCCH--HHHHHHHHhhhcchhHHH
Q 048533 544 LMITL--KIYRSFSASYAKDNEILD 566 (591)
Q Consensus 544 ~~~~~--~~~~~li~~~~~~~~~~~ 566 (591)
+.+|. ..|+.+|+-=..-|++..
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHH
Confidence 77664 489988887666666553
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.93 E-value=8e-06 Score=90.25 Aligned_cols=375 Identities=11% Similarity=-0.040 Sum_probs=233.8
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccC-HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 130 SHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPH-LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIH 208 (591)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 208 (591)
..++......+...|++.+|+..+..+.. .+. ..........+...|+++.+...++.+.......+.........
T Consensus 341 ~~lh~raa~~~~~~g~~~~Al~~a~~a~d---~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~ 417 (903)
T PRK04841 341 PELHRAAAEAWLAQGFPSEAIHHALAAGD---AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAW 417 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCC---HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHH
Confidence 34555566778888888888765554422 111 11122233445567787777777766532111112223334455
Q ss_pred HHHccCChhhHHHHHHHHhhCCC------CcC--cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHH
Q 048533 209 ACCKSSDVDKVEKLLCEMEFKDV------RAD--LFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDI----VTYNSL 276 (591)
Q Consensus 209 ~~~~~g~~~~a~~~~~~~~~~~~------~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l 276 (591)
.+...|+++++..++......-- .+. ......+...+...|++++|...+++....-...+. ...+.+
T Consensus 418 ~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~l 497 (903)
T PRK04841 418 LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVL 497 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 56678999999998887654210 111 111222344566899999999999987763111121 344566
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcC-----CCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHH
Q 048533 277 IHGFCREGRMREARRLFRDIKGA-----TPN--HVTYTTLIDGYCRANDLEEALRLREVMAAK----GVY--P-GVVTYN 342 (591)
Q Consensus 277 ~~~~~~~g~~~~A~~~~~~~~~~-----~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~--p-~~~~~~ 342 (591)
...+...|++++|...+.+.... .+. ..+...+...+...|++++|...+++.... +.. + ....+.
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 577 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR 577 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 67778899999999999887631 111 234556677788999999999998876542 211 1 123344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHH-----H
Q 048533 343 SILRKLCKEGRIRDANRLLNEMNEKK--IAP--DNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLML-DQFTY-----K 412 (591)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~ 412 (591)
.+...+...|++++|...+.+..... ..+ ....+..+...+...|+.+.|...+.......... ....+ .
T Consensus 578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 657 (903)
T PRK04841 578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADK 657 (903)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHH
Confidence 45556677899999999998875531 111 23345556677888999999999998875431111 11111 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHH
Q 048533 413 ALIHGFCKAKEMDIAKELLFGMLDAGFSPSY---CSYSWLVDGYCNKNNEEALLKLLDEFVSR----GLCV-DVSVYRAL 484 (591)
Q Consensus 413 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l 484 (591)
..+..+...|+.+.|...+............ ..+..+..++...|+.++|...++++... +..+ ...+...+
T Consensus 658 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~l 737 (903)
T PRK04841 658 VRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILL 737 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 1224445688999999998776542211111 12345667788899999999999988753 2222 23456677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 048533 485 IRRFCKKEKVDYAQRLFNLMQGN 507 (591)
Q Consensus 485 ~~~~~~~g~~~~a~~~~~~~~~~ 507 (591)
..++...|+.++|...+.+..+.
T Consensus 738 a~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 738 NQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77888999999999999999875
No 109
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.92 E-value=8.1e-06 Score=80.07 Aligned_cols=166 Identities=14% Similarity=0.198 Sum_probs=81.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHH
Q 048533 313 YCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASA 392 (591)
Q Consensus 313 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 392 (591)
.....++.+|+.+++.++.... -..-|..+...|...|+++.|+++|-+.- .++-.|.+|.+.|+++.|
T Consensus 742 ai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHH
Confidence 3344555666666665555421 12234555566666666666666664321 234456666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 393 MKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSR 472 (591)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 472 (591)
.++-.+.. |.......|..-..-+-+.|++.+|.+++-.+- .|+. .+..|-+.|..+..+++..+-.-.
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChh
Confidence 66554432 223334444444444555666666665553332 2332 244455555555555444432211
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 473 GLCVDVSVYRALIRRFCKKEKVDYAQRLFNL 503 (591)
Q Consensus 473 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 503 (591)
.-..|-..+..-+-..|+...|..-|-+
T Consensus 880 ---~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 880 ---HLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred ---hhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 1123334444445555555555544433
No 110
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.91 E-value=1e-07 Score=87.59 Aligned_cols=146 Identities=17% Similarity=0.111 Sum_probs=64.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHH
Q 048533 350 KEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCK----AKEMD 425 (591)
Q Consensus 350 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 425 (591)
..|++++|++++... .+.......+..+.+.++++.|.+.++.|.+.. .| .+...+..++.. ...+.
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCC
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHH
Confidence 345555555554321 134444445555555555555555555554431 12 222222222221 22355
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 048533 426 IAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKV-DYAQRLFNLM 504 (591)
Q Consensus 426 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~ 504 (591)
+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.++.+.+.. ++.+...++.+....|+. +.+.+++.++
T Consensus 185 ~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 185 DAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 555555554432 2345555555555555555555555555555544332 344444444444444444 3444455554
Q ss_pred Hh
Q 048533 505 QG 506 (591)
Q Consensus 505 ~~ 506 (591)
..
T Consensus 263 ~~ 264 (290)
T PF04733_consen 263 KQ 264 (290)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 111
>PLN02789 farnesyltranstransferase
Probab=98.90 E-value=1.6e-06 Score=80.88 Aligned_cols=206 Identities=11% Similarity=0.047 Sum_probs=140.8
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCccCHH
Q 048533 88 LTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLK-MTQDGLQVFDQMRVHNLMPHLH 166 (591)
Q Consensus 88 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~ 166 (591)
+...++.++|+.++++++..++ .+..++.....++...| .+++++..++++.+.+++ +..
T Consensus 47 l~~~e~serAL~lt~~aI~lnP------------------~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyq 107 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNP------------------GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQ 107 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCc------------------hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chH
Confidence 3345677888888888887653 33445555555666666 578999999999988877 777
Q ss_pred hHHHHHHHHHhcCCh--hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHH
Q 048533 167 ACTVLLNSLAKDRLT--DMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIAL 244 (591)
Q Consensus 167 ~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 244 (591)
+|+.....+.+.|.. +.++..++.+.+.+.+ +..+|+....++...|+++++++.++++++.+ +.+..+|+....+
T Consensus 108 aW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~v 185 (320)
T PLN02789 108 IWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFV 185 (320)
T ss_pred HhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHH
Confidence 888776666666653 6778888888888766 78888888888888899999999999988876 3467778777666
Q ss_pred HHhc---CCh----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHhhcCCC-ChhhHHHHHHH
Q 048533 245 YCKK---GMH----YEALAVQDRMEREGISPDIVTYNSLIHGFCRE----GRMREARRLFRDIKGATP-NHVTYTTLIDG 312 (591)
Q Consensus 245 ~~~~---g~~----~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~-~~~~~~~li~~ 312 (591)
+.+. |.. ++.++...+++...+ -|...|+.+...+... +...+|.+.+.+.....| +......+++.
T Consensus 186 l~~~~~l~~~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~ 264 (320)
T PLN02789 186 ITRSPLLGGLEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDL 264 (320)
T ss_pred HHhccccccccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHH
Confidence 6554 222 355666656665532 2556676666666552 334556666666554333 35556666666
Q ss_pred HHh
Q 048533 313 YCR 315 (591)
Q Consensus 313 ~~~ 315 (591)
|+.
T Consensus 265 ~~~ 267 (320)
T PLN02789 265 LCE 267 (320)
T ss_pred HHh
Confidence 654
No 112
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.85 E-value=6.6e-07 Score=81.22 Aligned_cols=107 Identities=8% Similarity=-0.020 Sum_probs=66.2
Q ss_pred CCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHH
Q 048533 73 NYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQV 152 (591)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 152 (591)
........+..++..+...|++++|...++++....+.. +....++..++.+|.+.|++++|+..
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~a~~~la~~~~~~~~~~~A~~~ 92 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS---------------PYAEQAQLDLAYAYYKSGDYAEAIAA 92 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------------hhHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 334466777778888888888888888888877654321 11123556677778888888888888
Q ss_pred HHHHhhCCCccCH--HhHHHHHHHHHhc--------CChhHHHHHHHHHHHC
Q 048533 153 FDQMRVHNLMPHL--HACTVLLNSLAKD--------RLTDMVWKVYKKMVQL 194 (591)
Q Consensus 153 ~~~~~~~~~~~~~--~~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~ 194 (591)
++++.+..+.... .++..+..++... |+++.|.+.++.+.+.
T Consensus 93 ~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 93 ADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred HHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 8888776543121 1344444444433 4455555555555554
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.85 E-value=2.4e-07 Score=84.11 Aligned_cols=185 Identities=9% Similarity=-0.076 Sum_probs=128.6
Q ss_pred HHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCC
Q 048533 46 VLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDD 125 (591)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (591)
.++..+...|+++.|...|+.+....|..+....++..++.++.+.|++++|+..++++.+..+....
T Consensus 38 ~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~------------ 105 (235)
T TIGR03302 38 EEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD------------ 105 (235)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc------------
Confidence 33444555699999999999999988874444567889999999999999999999999886643221
Q ss_pred CCCccchHHHHHHHHHhc--------CChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 126 PDGNSHVLSWLVIFYANL--------KMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV 197 (591)
Q Consensus 126 ~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (591)
....+..+..++.+. |++++|++.|+.+.+..+. +...+..+...... ....
T Consensus 106 ---~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~----------~~~~------ 165 (235)
T TIGR03302 106 ---ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYL----------RNRL------ 165 (235)
T ss_pred ---hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHH----------HHHH------
Confidence 112344555556554 7899999999999987654 33333222211110 0000
Q ss_pred CCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCC--CcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 198 ANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDV--RADLFTYNTLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 198 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
......+...+.+.|++++|...++....... +.....+..+..++...|++++|..+++.+...
T Consensus 166 --~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 --AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred --HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 01112455678888999999999998876521 123467888889999999999999988888765
No 114
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.84 E-value=2.4e-06 Score=88.83 Aligned_cols=259 Identities=11% Similarity=0.078 Sum_probs=170.0
Q ss_pred HHHHHHHhccccchhcCCCCCCCCChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCc
Q 048533 15 KTISAIMLKGHWAKLLNPNIASSLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHF 94 (591)
Q Consensus 15 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~ 94 (591)
..+..++--..|.+.--.+. .|+......-|...+...+++++|....+.+++.+|+ ....|..++.++.+.+++
T Consensus 7 ~~~~~~~~ee~~~r~~~~~~--~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~---~i~~yy~~G~l~~q~~~~ 81 (906)
T PRK14720 7 DKLTSLLNEEKWTRADANNY--SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK---SISALYISGILSLSRRPL 81 (906)
T ss_pred HHHHHHhhhhhhhhcccccC--CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc---ceehHHHHHHHHHhhcch
Confidence 34444554556775333322 3333334444455665669999999999999988887 888888888899999999
Q ss_pred hHHHHHHHHHHHc-CCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHH
Q 048533 95 KSAQNMLEKIALR-DFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLN 173 (591)
Q Consensus 95 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 173 (591)
++|..+ .+... .......+..-+.....+.+.+..++..++.+|-+.|+.++|..+|+++++.++. |..+.|.+..
T Consensus 82 ~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY 158 (906)
T PRK14720 82 NDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLAT 158 (906)
T ss_pred hhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHH
Confidence 998877 44332 2222223333333333345667778889999999999999999999999999866 8899999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhH
Q 048533 174 SLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYE 253 (591)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 253 (591)
.|... +.++|.+++.+.++. +...+++..+.+++.++.... +.+...+..+.
T Consensus 159 ~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~----------- 210 (906)
T PRK14720 159 SYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIE----------- 210 (906)
T ss_pred HHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHH-----------
Confidence 99988 999999998887654 555667777888888877653 11222222222
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC-ChhhHHHHHHHHH
Q 048533 254 ALAVQDRMERE-GISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATP-NHVTYTTLIDGYC 314 (591)
Q Consensus 254 a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~ 314 (591)
+++... |..--..++-.+-..|...++++++..+++.+.+..| |..+..-++.+|.
T Consensus 211 -----~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 -----RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred -----HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 222211 1122233444455566666777777777777776444 3455555666554
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.82 E-value=6.3e-07 Score=92.17 Aligned_cols=179 Identities=7% Similarity=-0.072 Sum_probs=140.0
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKI 122 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (591)
+.+-+.+.....+...++..-+-.++..-..|+++..++..|+.+..+.|++++|..+++.+.+..
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-------------- 116 (694)
T PRK15179 51 LLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-------------- 116 (694)
T ss_pred HHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--------------
Confidence 444444444444555544444444433333455689999999999999999999999999998865
Q ss_pred cCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 048533 123 HDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHL 202 (591)
Q Consensus 123 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 202 (591)
|++......++..+.+.+++++|+..+++....++. +...+..+..++.+.|++++|..+|+++...++. +..+
T Consensus 117 ----Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~ 190 (694)
T PRK15179 117 ----PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSEQADACFERLSRQHPE-FENG 190 (694)
T ss_pred ----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHH
Confidence 556677778888999999999999999999999876 8888999999999999999999999999985543 6788
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHH
Q 048533 203 YNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLI 242 (591)
Q Consensus 203 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 242 (591)
+..+...+.+.|+.++|...|++....- .+....|+..+
T Consensus 191 ~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 191 YVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 8899999999999999999999987653 23344444443
No 116
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.77 E-value=8.5e-06 Score=85.62 Aligned_cols=233 Identities=10% Similarity=0.029 Sum_probs=154.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc-CCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048533 269 DIVTYNSLIHGFCREGRMREARRLFRDIKG-ATP-----NHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYN 342 (591)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 342 (591)
+...|...+......++.++|+++.+++.. +.+ -...|.+++..-..-|.-+...++|+++.+.. -....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 345677777777777777777777777654 211 13456666666666677777777777777652 1234567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 048533 343 SILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLML-DQFTYKALIHGFCKA 421 (591)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 421 (591)
.|...|.+.+++++|.++++.|.+. .......|...+..+.+.++.+.|..++.++.+.-++. ......-.+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 7777777888888888888887775 33466677777888888777788888887776652221 233444555556677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 048533 422 KEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVD--VSVYRALIRRFCKKEKVDYAQR 499 (591)
Q Consensus 422 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~ 499 (591)
|+.+++..+|+..+... +.....|+..++.-.++|+.+.+..+|+++...++.|- -+.|...+..-...|+-+.+..
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 88888888888777653 34566777778887888888888888888887766544 3456666665555566555444
Q ss_pred HHHHHH
Q 048533 500 LFNLMQ 505 (591)
Q Consensus 500 ~~~~~~ 505 (591)
+=.++.
T Consensus 1693 VKarA~ 1698 (1710)
T KOG1070|consen 1693 VKARAK 1698 (1710)
T ss_pred HHHHHH
Confidence 444443
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.76 E-value=4.1e-07 Score=78.95 Aligned_cols=121 Identities=11% Similarity=0.067 Sum_probs=85.4
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHH
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLS 134 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (591)
++.++++..++.+++..|+ +...|..++.++...|++++|...|+++.+.+ |++..++.
T Consensus 53 ~~~~~~i~~l~~~L~~~P~---~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~------------------P~~~~~~~ 111 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQ---NSEQWALLGEYYLWRNDYDNALLAYRQALQLR------------------GENAELYA 111 (198)
T ss_pred hhHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------CCCHHHHH
Confidence 5567777777777776666 67777777777777788888777777777654 44555666
Q ss_pred HHHHH-HHhcCC--hHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 135 WLVIF-YANLKM--TQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV 197 (591)
Q Consensus 135 ~l~~~-~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (591)
.++.+ |.+.|+ .++|.+++++.++.++. +..++..+...+.+.|++++|+..|+.+.+...+
T Consensus 112 ~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 112 ALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 66664 456666 47777777777777665 6667777777777777777777777777766443
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.74 E-value=8.5e-06 Score=80.17 Aligned_cols=216 Identities=14% Similarity=0.085 Sum_probs=164.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048533 272 TYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKE 351 (591)
Q Consensus 272 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 351 (591)
.-..+...+...|-...|..+++++. .|...+.+|+..|+..+|..+..+..++ +|++..|..+.......
T Consensus 400 ~q~~laell~slGitksAl~I~Erle-------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE-------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH-------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 33556777888888899998888764 5777888888889888888888777774 67888888777776666
Q ss_pred CCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048533 352 GRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELL 431 (591)
Q Consensus 352 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 431 (591)
.-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|-.+..+..+.++++.|...|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 6677888877765432 22222223334688888888888877764 346778888888888888999998888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 432 FGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQG 506 (591)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 506 (591)
...+... +-+...|+.+-.+|.+.++..+|...++++.+.+. -+..+|...+-...+.|.+++|.+.+.++.+
T Consensus 543 ~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 543 HRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 8887643 33467788899999999999999999999888773 3677787888888888999999998888765
No 119
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.72 E-value=1.6e-05 Score=83.58 Aligned_cols=226 Identities=12% Similarity=0.060 Sum_probs=126.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHH
Q 048533 303 HVTYTTLIDGYCRANDLEEALRLREVMAAK-GVYPG---VVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNT 378 (591)
Q Consensus 303 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 378 (591)
...|-..+......++.++|.++.++.+.. ++.-. ...|.++++.-..-|.-+...++|+++.+.- -....|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence 455666666666677777777776666543 11111 1234444444445555566666666665541 12244566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcC
Q 048533 379 LINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFS-PSYCSYSWLVDGYCNKN 457 (591)
Q Consensus 379 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 457 (591)
|...|.+.+..++|.++++.|.+.- ......|...+..+.+..+-+.|..++.++++.-.+ -........+..-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 6666666666666666666665542 235556666666666666666666666666653211 11223333444445566
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH--HHHHHHHHHHHHcCChhHH
Q 048533 458 NEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDS--VIYTSLAYAYWRAGEPKAC 532 (591)
Q Consensus 458 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A 532 (591)
+.+.+..+|+..+...++ -...|+.+++.-.++|+.+.++.+|++.+..++.|-. ..|...+..--..|+-+.+
T Consensus 1615 DaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred CchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 666666666666655333 4556666666666666666666666666666555543 3445555444444554433
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.72 E-value=1.4e-06 Score=85.37 Aligned_cols=215 Identities=14% Similarity=0.070 Sum_probs=176.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHc
Q 048533 307 TTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKI 386 (591)
Q Consensus 307 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 386 (591)
..+...+...|-..+|..+|+++. .|...+.+|...|+..+|..+..+-+++ +||+..|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 456788899999999999998765 4667888999999999999999988884 78888888888776666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048533 387 GDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLL 466 (591)
Q Consensus 387 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 466 (591)
.-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|-.+..+..+.+++..|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 6677888877765332 22223333445789999999999888754 345678888888888999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 467 DEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 467 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
...+...+. +...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+....+.|.+++|++.+.++...
T Consensus 543 ~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 543 HRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 999987554 78899999999999999999999999999987 447788988888999999999999999998763
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.70 E-value=5.4e-06 Score=71.58 Aligned_cols=164 Identities=12% Similarity=-0.003 Sum_probs=96.2
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 048533 127 DGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVL 206 (591)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 206 (591)
|.+..+ ..+...+...|+-+.+..+.........+ +....+..+....+.|++..|...+.+.....+ +|...|+.+
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~l 140 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLL 140 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHH
Confidence 333344 44445555666666666666655444333 445555566666666666666666666665543 366666666
Q ss_pred HHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048533 207 IHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRM 286 (591)
Q Consensus 207 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 286 (591)
.-+|.+.|+++.|..-|.+..+.. +-+....+.+...+.-.|+.+.|..++......+.. |...-..+.......|++
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCCh
Confidence 666666666666666666665542 234555666666666666666666666666555322 444555555566666666
Q ss_pred HHHHHHHHH
Q 048533 287 REARRLFRD 295 (591)
Q Consensus 287 ~~A~~~~~~ 295 (591)
++|..+...
T Consensus 219 ~~A~~i~~~ 227 (257)
T COG5010 219 REAEDIAVQ 227 (257)
T ss_pred HHHHhhccc
Confidence 666665543
No 122
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.67 E-value=7.8e-07 Score=72.95 Aligned_cols=117 Identities=8% Similarity=-0.003 Sum_probs=85.2
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHH
Q 048533 61 CAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFY 140 (591)
Q Consensus 61 ~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (591)
...|+.+++..|+ .+...+.++...|++++|...|+.+...+ |.+..++..++.++
T Consensus 13 ~~~~~~al~~~p~------~~~~~g~~~~~~g~~~~A~~~~~~al~~~------------------P~~~~a~~~lg~~~ 68 (144)
T PRK15359 13 EDILKQLLSVDPE------TVYASGYASWQEGDYSRAVIDFSWLVMAQ------------------PWSWRAHIALAGTW 68 (144)
T ss_pred HHHHHHHHHcCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------CCcHHHHHHHHHHH
Confidence 4566777766654 24566778888888888888888877654 44556677777888
Q ss_pred HhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 048533 141 ANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLY 203 (591)
Q Consensus 141 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 203 (591)
.+.|++++|+..|+++.+.++. +..++..+..++...|++++|+..|+...+..+. +...+
T Consensus 69 ~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~-~~~~~ 129 (144)
T PRK15359 69 MMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA-DASWS 129 (144)
T ss_pred HHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHH
Confidence 8888888888888888877654 7777888888888888888888888888776543 34444
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.66 E-value=4.2e-06 Score=72.25 Aligned_cols=179 Identities=16% Similarity=0.057 Sum_probs=143.9
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHH
Q 048533 60 SCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIF 139 (591)
Q Consensus 60 A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (591)
+...+-......|+ +..+ ......+...|+-+++..+....... .+.+..+....+..
T Consensus 52 a~~al~~~~~~~p~---d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~------------------~~~d~~ll~~~gk~ 109 (257)
T COG5010 52 AAAALGAAVLRNPE---DLSI-AKLATALYLRGDADSSLAVLQKSAIA------------------YPKDRELLAAQGKN 109 (257)
T ss_pred HHHHHHHHHhcCcc---hHHH-HHHHHHHHhcccccchHHHHhhhhcc------------------CcccHHHHHHHHHH
Confidence 44444334444665 6777 77888888889888887777665442 23444455567788
Q ss_pred HHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhH
Q 048533 140 YANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKV 219 (591)
Q Consensus 140 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 219 (591)
..+.|++..|+..+++.....++ |..+|+.+.-+|.+.|+++.|..-|.+..+.-+. +....+.+.-.+.-.|+++.|
T Consensus 110 ~~~~g~~~~A~~~~rkA~~l~p~-d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A 187 (257)
T COG5010 110 QIRNGNFGEAVSVLRKAARLAPT-DWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDA 187 (257)
T ss_pred HHHhcchHHHHHHHHHHhccCCC-ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHH
Confidence 99999999999999999988765 9999999999999999999999999999998655 667788888899999999999
Q ss_pred HHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048533 220 EKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMER 263 (591)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 263 (591)
..++......+ .-|..+-..+.......|++++|.++...-..
T Consensus 188 ~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 188 ETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred HHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence 99999988764 34777888899999999999999988765443
No 124
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.59 E-value=4.5e-06 Score=72.51 Aligned_cols=119 Identities=13% Similarity=0.071 Sum_probs=80.9
Q ss_pred cCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCC--hhhH
Q 048533 143 LKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHA-CCKSSD--VDKV 219 (591)
Q Consensus 143 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~--~~~a 219 (591)
.++.++++..+++.++.++. +...|..+...+...|+++.|...|++..+..+. +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 45566677777777766655 6777777777777777777777777777776654 56666666654 355555 4777
Q ss_pred HHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 220 EKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
.+++++..+.+ +.+..++..+...+.+.|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777777664 335666777777777777777777777777665
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.58 E-value=4.2e-05 Score=79.86 Aligned_cols=222 Identities=12% Similarity=0.069 Sum_probs=128.6
Q ss_pred CCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHH---
Q 048533 76 HSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQV--- 152 (591)
Q Consensus 76 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~--- 152 (591)
....++..|+..+...|++++|.++++...+..+. ....|..++..|.+.++..++..+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~------------------~i~~yy~~G~l~~q~~~~~~~~lv~~l 90 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK------------------SISALYISGILSLSRRPLNDSNLLNLI 90 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc------------------ceehHHHHHHHHHhhcchhhhhhhhhh
Confidence 36777889999999999999999999988876543 333444444455555554444333
Q ss_pred ---------------HHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh
Q 048533 153 ---------------FDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVD 217 (591)
Q Consensus 153 ---------------~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 217 (591)
...+...+ -+..++..++.+|.+.|+.+++..+|+++.+.++. |..+.|.+...|... +++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHH
Confidence 22232221 12345555556666666666666666666665533 555566666666655 666
Q ss_pred hHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048533 218 KVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIK 297 (591)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 297 (591)
+|.+++.+.... +...+++..+.+++.++....+. +...+..+.+.....-.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~~------------ 218 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHRE------------ 218 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhhc------------
Confidence 666665555432 44445566666666666554211 22222222221111111
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 298 GATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLC 349 (591)
Q Consensus 298 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 349 (591)
...-..++..+-..|-..++++++..+++.+.+.... |.....-++.+|.
T Consensus 219 -~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 219 -FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred -cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 1122334445556777888999999999999987533 5566677777765
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.56 E-value=1.6e-05 Score=82.03 Aligned_cols=149 Identities=7% Similarity=-0.009 Sum_probs=128.8
Q ss_pred CCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 048533 124 DDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLY 203 (591)
Q Consensus 124 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 203 (591)
.+.+.+...+..|+.+..+.|.+++|+.+++.+.+..+. +..+...++..+.+.+++++|+..+++.....+. +....
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~ 157 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREI 157 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHH
Confidence 456777889999999999999999999999999998766 7888899999999999999999999999998776 77788
Q ss_pred HHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 048533 204 NVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSL 276 (591)
Q Consensus 204 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 276 (591)
..+..++.+.|++++|..+|+++...+ +-+..++..+...+...|+.++|...|++..+. ..|....|+..
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~ 228 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRR 228 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHH
Confidence 888899999999999999999999853 445788999999999999999999999998775 23344555443
No 127
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=0.00011 Score=63.62 Aligned_cols=85 Identities=18% Similarity=0.205 Sum_probs=37.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCH
Q 048533 314 CRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCK----EGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDT 389 (591)
Q Consensus 314 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 389 (591)
.+..+++-|.+.++.|.+.. +..+.+.|..++.+ .+.+.+|.-+|++|.++ .+|+..+.+....++...|++
T Consensus 148 lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCH
Confidence 33444444444444444431 33334433333332 22344444455554443 334444444444444445555
Q ss_pred HHHHHHHHHHHHC
Q 048533 390 ASAMKVKNRMLEA 402 (591)
Q Consensus 390 ~~a~~~~~~~~~~ 402 (591)
++|..+++.....
T Consensus 224 eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 224 EEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHHHHHhc
Confidence 5555555444444
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.56 E-value=1.4e-06 Score=71.53 Aligned_cols=105 Identities=12% Similarity=0.002 Sum_probs=88.3
Q ss_pred HHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCC
Q 048533 47 LLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDP 126 (591)
Q Consensus 47 l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (591)
++......|++++|+..|+++....|. +..++..++.++.+.|++++|+..|+.+...+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~------------------ 88 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPW---SWRAHIALAGTWMMLKEYTTAINFYGHALMLD------------------ 88 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------------------
Confidence 344555669999999999999998776 88999999999999999999999999999865
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHH
Q 048533 127 DGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLN 173 (591)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 173 (591)
|.++..+..++.++.+.|++++|+..|++.++..+. +...+.....
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~-~~~~~~~~~~ 134 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA-DASWSEIRQN 134 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 556778888999999999999999999999998654 4445544433
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.55 E-value=2.5e-06 Score=69.72 Aligned_cols=111 Identities=12% Similarity=0.053 Sum_probs=82.9
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHh
Q 048533 63 FFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYAN 142 (591)
Q Consensus 63 ~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (591)
.|+.++...|. +......++..+...|++++|...++.+...+ +.++..+..++..|..
T Consensus 5 ~~~~~l~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------p~~~~~~~~la~~~~~ 63 (135)
T TIGR02552 5 TLKDLLGLDSE---QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD------------------PYNSRYWLGLAACCQM 63 (135)
T ss_pred hHHHHHcCChh---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC------------------CCcHHHHHHHHHHHHH
Confidence 45556665554 56667778888888888888888888877644 3345667777788888
Q ss_pred cCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048533 143 LKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLG 195 (591)
Q Consensus 143 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 195 (591)
.|++++|+..+++..+.++. +...+..+..++...|+++.|...|+...+..
T Consensus 64 ~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 64 LKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 88888888888888777644 66777777788888888888888888887764
No 130
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=0.00013 Score=63.31 Aligned_cols=30 Identities=7% Similarity=-0.036 Sum_probs=12.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 477 DVSVYRALIRRFCKKEKVDYAQRLFNLMQG 506 (591)
Q Consensus 477 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 506 (591)
++.+.+....++...|++++|..+++....
T Consensus 206 T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 206 TPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred ChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 333333333333344444444444444333
No 131
>PF12854 PPR_1: PPR repeat
Probab=98.50 E-value=1.7e-07 Score=54.34 Aligned_cols=32 Identities=31% Similarity=0.551 Sum_probs=20.9
Q ss_pred CCCcCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 048533 508 GILGDSVIYTSLAYAYWRAGEPKACSDILDDM 539 (591)
Q Consensus 508 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 539 (591)
|+.||..+|+.++++|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 132
>PF12854 PPR_1: PPR repeat
Probab=98.50 E-value=2.6e-07 Score=53.60 Aligned_cols=32 Identities=53% Similarity=1.104 Sum_probs=17.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048533 265 GISPDIVTYNSLIHGFCREGRMREARRLFRDI 296 (591)
Q Consensus 265 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 296 (591)
|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555544
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=2.2e-05 Score=73.90 Aligned_cols=150 Identities=10% Similarity=0.062 Sum_probs=125.4
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
.....+-.+..+...|++++|+..++.+.+. .|+|+.......+.+.+.++.++|.+.++++
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~------------------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~ka 366 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAA------------------QPDNPYYLELAGDILLEANKAKEAIERLKKA 366 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 5677777888889999999999999998874 3567777777888999999999999999999
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcc
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLF 236 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 236 (591)
+...+. .....-.+..++.+.|++.+|+.+++......+. |...|..|.++|...|+..++.....+.
T Consensus 367 l~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~---------- 434 (484)
T COG4783 367 LALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAEG---------- 434 (484)
T ss_pred HhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHHH----------
Confidence 988654 3566778889999999999999999999887665 8899999999999999988887766554
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 237 TYNTLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 237 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
+.-.|+++.|...+....+.
T Consensus 435 --------~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 435 --------YALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred --------HHhCCCHHHHHHHHHHHHHh
Confidence 44568888888888887765
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=0.00034 Score=60.28 Aligned_cols=164 Identities=15% Similarity=0.078 Sum_probs=92.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q 048533 306 YTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCK 385 (591)
Q Consensus 306 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 385 (591)
|..++-+....|+.+.|..+++.+...- +-+..+-..-.-.+-..|++++|+++++.+++.+ +.|..++..-+...-.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 3444455556666666666666666542 2122221111122334566777777777666654 3355555555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHH
Q 048533 386 IGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKN---NEEAL 462 (591)
Q Consensus 386 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a 462 (591)
.|+.-+|++-+....+. +..|...|..+...|...|++++|.-.+++++-.. |.++..+..+...+.-.| +.+.+
T Consensus 133 ~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 66666666666555554 34567777777777777777777777777766543 234444444444443332 45566
Q ss_pred HHHHHHHHHCC
Q 048533 463 LKLLDEFVSRG 473 (591)
Q Consensus 463 ~~~~~~~~~~~ 473 (591)
.+++.+.++..
T Consensus 211 rkyy~~alkl~ 221 (289)
T KOG3060|consen 211 RKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHhC
Confidence 67777766653
No 135
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.40 E-value=0.0036 Score=63.82 Aligned_cols=233 Identities=10% Similarity=0.025 Sum_probs=142.6
Q ss_pred CChHHHHHHHHHHhccccchhcCCC---CCCCCChHH--HHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHH
Q 048533 9 SDTKFIKTISAIMLKGHWAKLLNPN---IASSLTSTA--IHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWT 83 (591)
Q Consensus 9 ~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~ 83 (591)
-.+...+.|...+.++.+...+... +...|...+ +...|..+ +.|+.++|..+++...... +++..+.-.
T Consensus 8 ~~err~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~--r~gk~~ea~~~Le~~~~~~---~~D~~tLq~ 82 (932)
T KOG2053|consen 8 MSERRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLF--RLGKGDEALKLLEALYGLK---GTDDLTLQF 82 (932)
T ss_pred cHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH--HhcCchhHHHHHhhhccCC---CCchHHHHH
Confidence 3456788888888888777666541 222343333 33333333 4589999998888755422 347777778
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCcc
Q 048533 84 MIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMP 163 (591)
Q Consensus 84 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 163 (591)
+-.+|.+.|++++|..+|+++....|. ......+..+|.+-+++.+-.+.--++-+.-++
T Consensus 83 l~~~y~d~~~~d~~~~~Ye~~~~~~P~-------------------eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk- 142 (932)
T KOG2053|consen 83 LQNVYRDLGKLDEAVHLYERANQKYPS-------------------EELLYHLFMAYVREKSYKKQQKAALQLYKNFPK- 142 (932)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhCCc-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-
Confidence 889999999999999999999886532 344555666777777766544444444343222
Q ss_pred CHHhHHHHHHHHHhcC-C---------hhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCChhhHHHHHHH-HhhCCC
Q 048533 164 HLHACTVLLNSLAKDR-L---------TDMVWKVYKKMVQLG-VVANIHLYNVLIHACCKSSDVDKVEKLLCE-MEFKDV 231 (591)
Q Consensus 164 ~~~~~~~ll~~~~~~~-~---------~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-~~~~~~ 231 (591)
+...+=.+++...+.. . ...|.+.++.+.+.+ .--+..-.......+...|++++|.+++.. ..+.-.
T Consensus 143 ~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~ 222 (932)
T KOG2053|consen 143 RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLT 222 (932)
T ss_pred ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcc
Confidence 3344434444444321 1 223556666666554 222222233344556677888999888843 333322
Q ss_pred CcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048533 232 RADLFTYNTLIALYCKKGMHYEALAVQDRMEREGI 266 (591)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 266 (591)
+-+...-+.-+..+...+++.+..++-.++...|.
T Consensus 223 ~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 223 SANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred ccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 33333444566777788888888888888887753
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.40 E-value=2.1e-05 Score=74.96 Aligned_cols=122 Identities=16% Similarity=0.222 Sum_probs=67.3
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 048533 83 TMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLM 162 (591)
Q Consensus 83 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 162 (591)
.++..+...++++.|+.+|+++.+..+ .+...++..+...++-.+|++++++.++..+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~p---------------------ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~ 232 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDP---------------------EVAVLLARVYLLMNEEVEAIRLLNEALKENPQ 232 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCC---------------------cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence 455555555566666666665554331 23333445555555555666666665554433
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHh
Q 048533 163 PHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEME 227 (591)
Q Consensus 163 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 227 (591)
+...+......+.+.++++.|+++.+++.+..+. +..+|..|..+|.+.|+++.|+-.+..++
T Consensus 233 -d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 233 -DSELLNLQAEFLLSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 4555555555566666666666666666655332 34456666666666666666666665554
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.40 E-value=0.00012 Score=69.27 Aligned_cols=148 Identities=15% Similarity=0.092 Sum_probs=122.6
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh
Q 048533 138 IFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVD 217 (591)
Q Consensus 138 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 217 (591)
..+...|++++|+..++.++...+. |...+......+.+.++..+|.+.++.+....+. .....-.+..++.+.|++.
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChH
Confidence 3477789999999999999988665 7777788889999999999999999999987544 3566777889999999999
Q ss_pred hHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048533 218 KVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIK 297 (591)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 297 (591)
+|..+++...... +-|+..|..|..+|...|+..++.....+... ..|+++.|...+....
T Consensus 392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~------------------~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYA------------------LAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH------------------hCCCHHHHHHHHHHHH
Confidence 9999999988774 66899999999999999999999888876643 3688888888887776
Q ss_pred c-CCCChhhH
Q 048533 298 G-ATPNHVTY 306 (591)
Q Consensus 298 ~-~~~~~~~~ 306 (591)
+ .+.+...|
T Consensus 453 ~~~~~~~~~~ 462 (484)
T COG4783 453 QQVKLGFPDW 462 (484)
T ss_pred HhccCCcHHH
Confidence 5 44444443
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.39 E-value=4.2e-06 Score=68.36 Aligned_cols=108 Identities=9% Similarity=-0.067 Sum_probs=89.6
Q ss_pred CCCCCCChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCc
Q 048533 33 NIASSLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLST 112 (591)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 112 (591)
.+...|.+......++..+...|++++|...|+.+....|. +...+..++..+.+.|++++|...++.+...+
T Consensus 9 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---- 81 (135)
T TIGR02552 9 LLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY---NSRYWLGLAACCQMLKEYEEAIDAYALAAALD---- 81 (135)
T ss_pred HHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----
Confidence 34445555555566667777789999999999999887776 78899999999999999999999999988754
Q ss_pred hHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 113 PSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
+.+...+..++..|...|++++|+..|+...+.++
T Consensus 82 --------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 82 --------------PDDPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred --------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 44566788888999999999999999999998754
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=0.001 Score=57.38 Aligned_cols=189 Identities=9% Similarity=-0.001 Sum_probs=127.2
Q ss_pred CChhHHHHHHHHHhhhCCCC--CCCH-HHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccc
Q 048533 55 HIPSLSCAFFKWAESAVPNY--KHSL-QSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSH 131 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~--~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (591)
.++++-+.++...+...+.. .++. .+|..++-+....|+.+.|...++.+..+-+ .+..
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp------------------~S~R 87 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFP------------------GSKR 87 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC------------------CChh
Confidence 35666666666655432221 1222 3344677788888999999888888776542 2223
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACC 211 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 211 (591)
+...-+..+-..|++++|+++|+.+++.++. |..++..-+......|+.-.|++-+....+. +..|...|.-+...|.
T Consensus 88 V~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~ 165 (289)
T KOG3060|consen 88 VGKLKAMLLEATGNYKEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYL 165 (289)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHH
Confidence 3333344466778899999999999888765 6777777777777777777888777777665 3458888888888888
Q ss_pred ccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcC---ChhHHHHHHHHHHHC
Q 048533 212 KSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKG---MHYEALAVQDRMERE 264 (591)
Q Consensus 212 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~ 264 (591)
..|++++|.-.++++.-.. |.+.-.+..+...+.-.| +.+.+.++|.+..+.
T Consensus 166 ~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 166 SEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred hHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 8888888888888887653 334444555555544443 456677778777765
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.29 E-value=1.3e-05 Score=66.09 Aligned_cols=121 Identities=14% Similarity=0.078 Sum_probs=79.9
Q ss_pred CCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchH
Q 048533 54 CHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL 133 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (591)
.+++..+...++.+.+..|+.+....+.+.++..+...|++++|...|+.+....+. +. +. ..+.
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d--~~-l~------------~~a~ 88 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPD--PE-LK------------PLAR 88 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--HH-HH------------HHHH
Confidence 477777777788877777763333455566778888888888888888888775421 11 11 1233
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKM 191 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 191 (591)
..++.++...|++++|+..++....... ....+.....++.+.|++++|...|+..
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 4567777888888888888866433322 3345566677777788888887777653
No 141
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.28 E-value=1.8e-05 Score=62.93 Aligned_cols=94 Identities=10% Similarity=-0.025 Sum_probs=56.3
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccch
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHV 132 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (591)
..|++++|...|..+....|+.+....++..++.++.+.|++++|...|+.+....+.. +....+
T Consensus 14 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~ 78 (119)
T TIGR02795 14 KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS---------------PKAPDA 78 (119)
T ss_pred HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC---------------CcccHH
Confidence 34667777777777666666544445556666677777777777777776666543211 112344
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
+..++.++.+.|++++|++.++++.+..+
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 55556666666666666666666666543
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.24 E-value=4.4e-05 Score=72.82 Aligned_cols=126 Identities=10% Similarity=0.100 Sum_probs=104.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCK 212 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 212 (591)
...++..+...++++.|+.+|+++.+.+ |+ ....+++.+...++-.+|.+++++..+..+. +......-.+.+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 3345666777899999999999999885 34 4456788888888899999999999976554 67777778888999
Q ss_pred cCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 213 SSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 213 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
.++++.|+.+.++..... |-+..+|..|..+|...|+++.|+-.++.+.-.
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 999999999999998873 445669999999999999999999999887643
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.13 E-value=8.3e-05 Score=59.06 Aligned_cols=104 Identities=12% Similarity=0.005 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048533 79 QSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRV 158 (591)
Q Consensus 79 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 158 (591)
.+++.++..+.+.|++++|...|+.+....+.. +....++..++.++.+.|++++|+..|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 67 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS---------------TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK 67 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---------------cccHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 456777778888888888888888877654211 11234566677778888888888888888776
Q ss_pred CCCcc--CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 159 HNLMP--HLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV 197 (591)
Q Consensus 159 ~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (591)
..+.. ...++..+..++.+.|+.+.|...++++.+..+.
T Consensus 68 ~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 68 KYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 54331 2445667777777788888888888887776543
No 144
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.13 E-value=0.008 Score=56.46 Aligned_cols=131 Identities=9% Similarity=0.126 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 409 FTYKALIHGFCKAKEMDIAKELLFGMLDAG-FSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRR 487 (591)
Q Consensus 409 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 487 (591)
.+|...+..-.+...++.|..+|.+..+.+ +.++..++++++..++ .|+...|.++|+.-+..- +-++.-.+..+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 345556666667777888888888888877 5677777888877665 567778888887766652 2233333455566
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 488 FCKKEKVDYAQRLFNLMQGNGILGD--SVIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 488 ~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
+..-++-+.|..+|+..+.+ +..+ ..+|..+++.-..-|+...+..+=++|...
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 67778888888888866654 3333 467888888888888888887777777663
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.13 E-value=0.00016 Score=59.55 Aligned_cols=115 Identities=17% Similarity=0.121 Sum_probs=56.6
Q ss_pred cCChhhHHHHHHHHhhCCCCcC---cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHH
Q 048533 213 SSDVDKVEKLLCEMEFKDVRAD---LFTYNTLIALYCKKGMHYEALAVQDRMEREGISPD--IVTYNSLIHGFCREGRMR 287 (591)
Q Consensus 213 ~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~ 287 (591)
.++...+...++.+.... +.+ ....-.+...+...|++++|...|+........|+ ......+...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 555555555555555442 111 11222233455555666666666666655432222 122333455555566666
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 288 EARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREV 328 (591)
Q Consensus 288 ~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 328 (591)
+|+..++...........+.....+|.+.|+.++|...|+.
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666655433233334444555556666666666665554
No 146
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.12 E-value=0.00071 Score=60.87 Aligned_cols=83 Identities=12% Similarity=0.023 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+....+..+..+...|++++|+..|+.+....+.+.. ......+++.+|.+.+++++|+..+++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~---------------a~~a~l~la~ayy~~~~y~~A~~~~e~f 95 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPY---------------SQQVQLDLIYAYYKNADLPLAQAAIDRF 95 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH---------------HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4455556677777788888888888888776543311 1233456777888888888888888888
Q ss_pred hhCCCccCHHhHHHHHHH
Q 048533 157 RVHNLMPHLHACTVLLNS 174 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~ 174 (591)
.+..+......+...+.+
T Consensus 96 i~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 96 IRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHhCcCCCchHHHHHHHH
Confidence 877554333333333333
No 147
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.05 E-value=6.3e-06 Score=60.55 Aligned_cols=82 Identities=10% Similarity=0.130 Sum_probs=61.9
Q ss_pred CCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchH
Q 048533 54 CHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL 133 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (591)
.|+++.|+.+|+.+.+..|..+ +...++.++.++.+.|++++|+.++++ ...+ +.+..+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~------------------~~~~~~~ 61 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD------------------PSNPDIH 61 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH------------------HCHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC------------------CCCHHHH
Confidence 4789999999999999887511 344556799999999999999999988 3322 1223455
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQ 155 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~ 155 (591)
..++.+|.+.|++++|+++|++
T Consensus 62 ~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 62 YLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHhc
Confidence 5668889999999999999876
No 148
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.02 E-value=8.2e-05 Score=71.40 Aligned_cols=89 Identities=12% Similarity=-0.061 Sum_probs=75.1
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccch
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHV 132 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (591)
..|+++.|+..|+.+++..|+ +..++..++.++.+.|++++|+..++++...+ +.+..+
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~---~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~------------------P~~~~a 72 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPN---NAELYADRAQANIKLGNFTEAVADANKAIELD------------------PSLAKA 72 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------cCCHHH
Confidence 458999999999999988887 78888899999999999999999999988765 345567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHNLM 162 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 162 (591)
+..++.+|...|++++|+..|+++++.++.
T Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 73 YLRKGTACMKLEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 778888899999999999999999887644
No 149
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.99 E-value=6.3e-05 Score=66.53 Aligned_cols=87 Identities=11% Similarity=0.012 Sum_probs=52.6
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccch
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHV 132 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (591)
+.++|++|+..|..|++..|. +...|..-+.+|.+.|+++.|++-++..+..+ +.....
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~---nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD------------------p~yska 151 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPT---NAVYYCNRAAAYSKLGEYEDAVKDCESALSID------------------PHYSKA 151 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC------------------hHHHHH
Confidence 346666666666666665554 44445556666666666666666666666543 223345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
|..|..+|...|++++|++.|.+.++.+
T Consensus 152 y~RLG~A~~~~gk~~~A~~aykKaLeld 179 (304)
T KOG0553|consen 152 YGRLGLAYLALGKYEEAIEAYKKALELD 179 (304)
T ss_pred HHHHHHHHHccCcHHHHHHHHHhhhccC
Confidence 5566666666666666666666666543
No 150
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.97 E-value=0.00012 Score=59.06 Aligned_cols=99 Identities=12% Similarity=0.053 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+.+..+.++..+...|++++|.++|+.+...+ +.+.+.+..|+.++-..|++++|+..|..+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D------------------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A 95 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD------------------AWSFDYWFRLGECCQAQKHWGEAIYAYGRA 95 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------cccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56667777788888888888888888877654 334455666777777888888888888888
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQL 194 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 194 (591)
...++. +..++-.+..++...|+.+.|++.|+..+..
T Consensus 96 ~~L~~d-dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 96 AQIKID-APQAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HhcCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777754 6777777777888888888888877776654
No 151
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.0017 Score=60.13 Aligned_cols=58 Identities=10% Similarity=-0.046 Sum_probs=44.7
Q ss_pred HHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 048533 46 VLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIAL 106 (591)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 106 (591)
-....+.+.+++..|+..+..|++..|. +...|..-+..+..-|+|++|..-.+.-.+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~pd---~a~yy~nRAa~~m~~~~~~~a~~dar~~~r 111 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMCPD---NASYYSNRAATLMMLGRFEEALGDARQSVR 111 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhCcc---chhhhchhHHHHHHHHhHhhcccchhhhee
Confidence 3455556668899999999999998887 566566788888999999998776655443
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.93 E-value=0.0001 Score=55.61 Aligned_cols=94 Identities=16% Similarity=0.089 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 81 HWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 81 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
+..++..+...|++++|...++.+.+..+ .+..++..++..+...+++++|.+.++...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 64 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP------------------DNADAYYNLAAAYYKLGKYEEALEDYEKALELD 64 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34455555555566666555555544321 111334444555555555555555555555543
Q ss_pred CccCHHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048533 161 LMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQ 193 (591)
Q Consensus 161 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 193 (591)
+. +..++..+...+...|+++.|...+....+
T Consensus 65 ~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 65 PD-NAKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred Cc-chhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 32 333444555555555555555555554443
No 153
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.92 E-value=0.021 Score=56.82 Aligned_cols=221 Identities=10% Similarity=0.032 Sum_probs=117.1
Q ss_pred hhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHH
Q 048533 57 PSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWL 136 (591)
Q Consensus 57 ~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 136 (591)
.+.|.++.+. +| .++.|-.++....+.-.++.|...|-+....... .+.+.+-..+... .-..-
T Consensus 679 ledA~qfiEd----nP----HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gi---k~vkrl~~i~s~~-----~q~ae 742 (1189)
T KOG2041|consen 679 LEDAIQFIED----NP----HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGI---KLVKRLRTIHSKE-----QQRAE 742 (1189)
T ss_pred hHHHHHHHhc----CC----chHHHHHHHHHHHHHHhhhhHhhhhhhhccccch---hHHHHhhhhhhHH-----HHhHh
Confidence 4666666544 44 3566666666555666677777766555432111 1111111111100 00111
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccC
Q 048533 137 VIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV--ANIHLYNVLIHACCKSS 214 (591)
Q Consensus 137 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g 214 (591)
+.+| -|++++|.++|-.|.+++. .+....+.|+|-.+.++++.--. +.. .-...|+.+...+....
T Consensus 743 i~~~--~g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~ 810 (1189)
T KOG2041|consen 743 ISAF--YGEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMM 810 (1189)
T ss_pred Hhhh--hcchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHH
Confidence 2222 3788888888887776543 24556667777766666543211 110 11346777777777777
Q ss_pred ChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048533 215 DVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFR 294 (591)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 294 (591)
.+++|.++|..-... ...+.++.+...+++-..+...+.+ +....-.+.+++.+.|..++|.+.+-
T Consensus 811 ~We~A~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 811 EWEEAAKYYSYCGDT---------ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHHHHHHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHH
Confidence 777777777654321 2345566666666655555444432 44455556666777777777766665
Q ss_pred HhhcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048533 295 DIKGATPNHVTYTTLIDGYCRANDLEEALRLR 326 (591)
Q Consensus 295 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 326 (591)
+... |. ..+..|...+++.+|.++-
T Consensus 877 r~s~--pk-----aAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 877 RRSL--PK-----AAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred hccC--cH-----HHHHHHHHHHHHHHHHHHH
Confidence 5431 21 2234455555555555543
No 154
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.92 E-value=0.0002 Score=64.80 Aligned_cols=92 Identities=7% Similarity=-0.029 Sum_probs=58.8
Q ss_pred CCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchH
Q 048533 54 CHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL 133 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (591)
.|++++|+..|+.+++.+|+.+....+++.++.+|...|++++|...|+.+.+..+. .+..++++
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~---------------s~~~~dAl 220 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK---------------SPKAADAM 220 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------------CcchhHHH
Confidence 366777777777777767764444566667777777777777777777776654332 12334455
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
..++.+|...|+.++|..+|+.+.+..
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 556666666777777777777666653
No 155
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.92 E-value=0.0013 Score=59.17 Aligned_cols=59 Identities=14% Similarity=-0.022 Sum_probs=49.3
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLS 111 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 111 (591)
..|++++|...|+.+....|..+....+...++.++.+.+++++|+..+++..+..|..
T Consensus 44 ~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~ 102 (243)
T PRK10866 44 QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH 102 (243)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC
Confidence 35999999999999999888743334445788999999999999999999999876543
No 156
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.89 E-value=0.00053 Score=58.46 Aligned_cols=93 Identities=13% Similarity=-0.026 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
....+..++..+...|++++|...|+++....+.+ +....++..++..|.+.|++++|+..++++
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 98 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP---------------NDRSYILYNMGIIYASNGEHDKALEYYHQA 98 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---------------chHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45567788888889999999999998887643221 112346777888888999999999999988
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHH
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVW 185 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 185 (591)
.+..+. +...+..+...+...|+...+.
T Consensus 99 l~~~p~-~~~~~~~lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 99 LELNPK-QPSALNNIAVIYHKRGEKAEEA 126 (172)
T ss_pred HHhCcc-cHHHHHHHHHHHHHcCChHhHh
Confidence 887554 5666777777777777654433
No 157
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.88 E-value=0.00056 Score=55.24 Aligned_cols=97 Identities=9% Similarity=-0.007 Sum_probs=69.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048533 131 HVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHAC 210 (591)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 210 (591)
+.+..+.-.+...|++++|.++|+.+...++. +..-|..|.-++-..|++++|+..|......++. +...+-.+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 34445555666778888888888877777665 6667777777777778888888888877777654 666666677777
Q ss_pred HccCChhhHHHHHHHHhhC
Q 048533 211 CKSSDVDKVEKLLCEMEFK 229 (591)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~ 229 (591)
...|+.+.|.+.|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 7778888777777776553
No 158
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.00063 Score=60.79 Aligned_cols=118 Identities=10% Similarity=-0.054 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHH
Q 048533 57 PSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWL 136 (591)
Q Consensus 57 ~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 136 (591)
++.-..-.+..+..+|+ +.+-|..|+.+|...|++..|..-|++..+.. +++++++..+
T Consensus 138 ~~~l~a~Le~~L~~nP~---d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~------------------g~n~~~~~g~ 196 (287)
T COG4235 138 MEALIARLETHLQQNPG---DAEGWDLLGRAYMALGRASDALLAYRNALRLA------------------GDNPEILLGL 196 (287)
T ss_pred HHHHHHHHHHHHHhCCC---CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC------------------CCCHHHHHHH
Confidence 33444444444555666 77777777777777777777777777776644 4455555555
Q ss_pred HHHHHhcC---ChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048533 137 VIFYANLK---MTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGV 196 (591)
Q Consensus 137 ~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 196 (591)
+.++..+. +-.++..+|+++++.++. |+.+...|...+...|++.+|...|+.|.+...
T Consensus 197 aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 197 AEALYYQAGQQMTAKARALLRQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 55444322 345677777777777655 666777777777777777777777777776543
No 159
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.88 E-value=0.00095 Score=58.53 Aligned_cols=71 Identities=10% Similarity=0.053 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+....+..+..+...|++.+|+..|+.+....+.+ +..+.+...++.+|.+.|++++|+..+++.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s---------------~~a~~A~l~la~a~y~~~~y~~A~~~~~~f 68 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNS---------------PYAPQAQLMLAYAYYKQGDYEEAIAAYERF 68 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS---------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555666667777777777777777776654332 223345556667777777777777777776
Q ss_pred hhCCCc
Q 048533 157 RVHNLM 162 (591)
Q Consensus 157 ~~~~~~ 162 (591)
++..+.
T Consensus 69 i~~yP~ 74 (203)
T PF13525_consen 69 IKLYPN 74 (203)
T ss_dssp HHH-TT
T ss_pred HHHCCC
Confidence 665443
No 160
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.88 E-value=3e-05 Score=45.68 Aligned_cols=33 Identities=52% Similarity=0.706 Sum_probs=25.3
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 048533 237 TYNTLIALYCKKGMHYEALAVQDRMEREGISPD 269 (591)
Q Consensus 237 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 269 (591)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 161
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.87 E-value=2.8e-05 Score=45.81 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 048533 515 IYTSLAYAYWRAGEPKACSDILDDMYRRRLMIT 547 (591)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 547 (591)
+|+.++.+|.+.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466667777777777777777777776666665
No 162
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.86 E-value=0.027 Score=53.24 Aligned_cols=446 Identities=12% Similarity=0.090 Sum_probs=222.8
Q ss_pred cCCCChhHHHHHHHHHhhhCCCCC--CCHHHHH-HHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCC
Q 048533 52 NCCHIPSLSCAFFKWAESAVPNYK--HSLQSHW-TMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDG 128 (591)
Q Consensus 52 ~~~~~~~~A~~~f~~~~~~~p~~~--~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (591)
.+.++...|.++|.+......+.+ -..+++. .++.+|.. ++.+.....+-...+.. +.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~------------------~~ 77 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF------------------GK 77 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc------------------CC
Confidence 445788889999888765432211 1123344 35555554 34444444444443322 11
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHhhC--CCcc------------CHHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 129 NSHVLSWLVIFYANLKMTQDGLQVFDQMRVH--NLMP------------HLHACTVLLNSLAKDRLTDMVWKVYKKMVQL 194 (591)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 194 (591)
.+.+....+-...+.+.+.+|++.+..-..+ +..| +...-+..++++...|.+.+++.+++++...
T Consensus 78 s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 78 SAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 2222222333466789999999888765554 2221 1122256778888999999999888887654
Q ss_pred ----CCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCC-CCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 048533 195 ----GVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKD-VRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPD 269 (591)
Q Consensus 195 ----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 269 (591)
....+..+|+.++-.+++ .+|-++.+.. ...-+. |-.++..|.+. ...++.-.=..+.|.
T Consensus 158 llkrE~~w~~d~yd~~vlmlsr--------SYfLEl~e~~s~dl~pd-yYemilfY~kk------i~~~d~~~Y~k~~pe 222 (549)
T PF07079_consen 158 LLKRECEWNSDMYDRAVLMLSR--------SYFLELKESMSSDLYPD-YYEMILFYLKK------IHAFDQRPYEKFIPE 222 (549)
T ss_pred HhhhhhcccHHHHHHHHHHHhH--------HHHHHHHHhcccccChH-HHHHHHHHHHH------HHHHhhchHHhhCcH
Confidence 344788888886665553 3333332210 011111 22233333221 011111000112233
Q ss_pred HHHHHHHHHHHHhcC-----CHHHHHHHHHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHH
Q 048533 270 IVTYNSLIHGFCREG-----RMREARRLFRDIKGATPN-HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYP----GVV 339 (591)
Q Consensus 270 ~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p----~~~ 339 (591)
...+..++....-.. -+-.+.+.|+.-. ..|+ ......+...+.. +.+++..+.+.+....+.+ =..
T Consensus 223 eeL~s~imqhlfi~p~e~l~~~mq~l~~We~~y-v~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~ 299 (549)
T PF07079_consen 223 EELFSTIMQHLFIVPKERLPPLMQILENWENFY-VHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELID 299 (549)
T ss_pred HHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhc-cCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333333333222111 1222233332211 2333 2223333333333 4444444444433321111 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHH-------HHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCH
Q 048533 340 TYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTC-------NTLINAYCK----IGDTASAMKVKNRMLEAGLMLDQ 408 (591)
Q Consensus 340 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 408 (591)
++..++....+.++...|.+.+.-+.-. .|+...- ..+-+..+. .-+...-+.+|+.+....+ |.
T Consensus 300 ~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--Dr 375 (549)
T PF07079_consen 300 RFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DR 375 (549)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cH
Confidence 5666666666777777776666655443 2222111 111111111 1122233445555544432 22
Q ss_pred -HHHHHH---HHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHh---cCCHHHHHHHHHHHHHCCCCC
Q 048533 409 -FTYKAL---IHGFCKAKE-MDIAKELLFGMLDAGFSPSYCSYSW----LVDGYCN---KNNEEALLKLLDEFVSRGLCV 476 (591)
Q Consensus 409 -~~~~~l---~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~---~g~~~~a~~~~~~~~~~~~~~ 476 (591)
.....+ ..-+.+.|. -++|..+++.+++.. +-|..+-+. +=..|.+ ...+..-..+-+-+.+.|+.|
T Consensus 376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 112222 223445555 888999999888742 223333222 2233332 233444445545555667665
Q ss_pred C----HHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 477 D----VSVYRALIRR--FCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 477 ~----~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
- ...-|.|.++ +...|++.++.-.-..+.+ +.|++.+|..++-++....++++|..++..+.-
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 3 3445555554 3568999999888777776 688999999999999999999999999887544
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.85 E-value=0.0039 Score=57.98 Aligned_cols=125 Identities=14% Similarity=0.145 Sum_probs=61.0
Q ss_pred HHHHHHcc-CChhhHHHHHHHHhhC----CCC-cCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----CCHH-HH
Q 048533 206 LIHACCKS-SDVDKVEKLLCEMEFK----DVR-ADLFTYNTLIALYCKKGMHYEALAVQDRMEREGIS-----PDIV-TY 273 (591)
Q Consensus 206 ll~~~~~~-g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----p~~~-~~ 273 (591)
+...|... |+++.|.+.|++.... |.+ .-..++..+...+.+.|++++|.++|++....... .+.. .+
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 34455555 6666666666665331 100 01224455666677777777777777776654221 1121 22
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCCCh------hhHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 048533 274 NSLIHGFCREGRMREARRLFRDIKGATPNH------VTYTTLIDGYCR--ANDLEEALRLREVMA 330 (591)
Q Consensus 274 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~li~~~~~--~g~~~~a~~~~~~~~ 330 (591)
...+-++...|++..|.+.+++.....|+. .....++.++-. ...++.+..-|+.+.
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 233345555677777777777766544421 223344444432 233555555555444
No 164
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.84 E-value=0.00028 Score=53.15 Aligned_cols=95 Identities=17% Similarity=0.051 Sum_probs=65.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCK 212 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 212 (591)
+..++..+...|++++|+..++++.+..+. +...+..+...+...++++.|.+.++...+.... +..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 445666677788888888888887776543 4456667777777777777777777777766543 44566666667777
Q ss_pred cCChhhHHHHHHHHhhC
Q 048533 213 SSDVDKVEKLLCEMEFK 229 (591)
Q Consensus 213 ~g~~~~a~~~~~~~~~~ 229 (591)
.|+++.|...+......
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 77777777777666543
No 165
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.83 E-value=0.00034 Score=67.18 Aligned_cols=124 Identities=19% Similarity=0.147 Sum_probs=87.6
Q ss_pred CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 048533 368 KIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEA--GLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCS 445 (591)
Q Consensus 368 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 445 (591)
+.+.+...+..+++.+....+.+.+..++-+.... ....-+.|..++++.|.+.|..+.+..++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556667777777777777777777777777654 1222234556778888888888888888887777888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048533 446 YSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKK 491 (591)
Q Consensus 446 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 491 (591)
++.|++.+.+.|++..|.++...|...+...++.++...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888887777766555666665555555544
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.83 E-value=0.00046 Score=66.26 Aligned_cols=96 Identities=9% Similarity=-0.095 Sum_probs=72.7
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 048533 83 TMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLM 162 (591)
Q Consensus 83 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 162 (591)
..+..+...|++++|+..|++++..+ +.+..++..++.+|.+.|++++|+..++++++.++.
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~------------------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~ 68 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD------------------PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS 68 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 34566777888888888888887754 344556777777888888888888888888887654
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 163 PHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV 197 (591)
Q Consensus 163 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (591)
+...|..+..+|...|+++.|+..|+...+.++.
T Consensus 69 -~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 69 -LAKAYLRKGTACMKLEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred -CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 6677778888888888888888888888876543
No 167
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.82 E-value=0.00035 Score=59.38 Aligned_cols=103 Identities=8% Similarity=-0.043 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHH
Q 048533 57 PSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWL 136 (591)
Q Consensus 57 ~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 136 (591)
+..+.+.+....+..+. ......+..++..+...|++++|+..|+++....+. +.....++..+
T Consensus 15 ~~~~~~~l~~~~~~~~~-~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---------------~~~~~~~~~~l 78 (168)
T CHL00033 15 FTIVADILLRILPTTSG-EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID---------------PYDRSYILYNI 78 (168)
T ss_pred cccchhhhhHhccCCch-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---------------chhhHHHHHHH
Confidence 34444444443332322 223455677888888889999999999888764321 11123466778
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHH
Q 048533 137 VIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLA 176 (591)
Q Consensus 137 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 176 (591)
+.+|...|++++|+..+++..+..+. ...++..+...+.
T Consensus 79 g~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~i~~ 117 (168)
T CHL00033 79 GLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAVICH 117 (168)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 88888889999999888888876543 4455666666665
No 168
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.82 E-value=4.1e-05 Score=44.75 Aligned_cols=32 Identities=28% Similarity=0.474 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 048533 515 IYTSLAYAYWRAGEPKACSDILDDMYRRRLMI 546 (591)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 546 (591)
+|+.++.+|.+.|+++.|.++|++|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 169
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.81 E-value=0.00052 Score=53.45 Aligned_cols=109 Identities=12% Similarity=0.024 Sum_probs=67.1
Q ss_pred hhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCC
Q 048533 49 NLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDG 128 (591)
Q Consensus 49 ~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (591)
..+...|++++|+.+|+.++...........++..++..+...|++++|..++++.....+. .+.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~---------------~~~ 73 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD---------------DEL 73 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------------ccc
Confidence 33445588888888888887754442333566777888888888888888888877664321 011
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHH
Q 048533 129 NSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLA 176 (591)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 176 (591)
+..+...+..++...|+.++|++.+-..... +...|..-|..|.
T Consensus 74 ~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~----~~~~y~ra~~~ya 117 (120)
T PF12688_consen 74 NAALRVFLALALYNLGRPKEALEWLLEALAE----TLPRYRRAIRFYA 117 (120)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 2233334455677778888888877665542 3334444444443
No 170
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.80 E-value=4.3e-05 Score=44.66 Aligned_cols=33 Identities=36% Similarity=0.582 Sum_probs=20.5
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 048533 236 FTYNTLIALYCKKGMHYEALAVQDRMEREGISP 268 (591)
Q Consensus 236 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 268 (591)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666554
No 171
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.017 Score=53.90 Aligned_cols=258 Identities=11% Similarity=-0.045 Sum_probs=143.1
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh
Q 048533 138 IFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVD 217 (591)
Q Consensus 138 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 217 (591)
..+.+..++.+|+..+..+++..+. +...|..-+..+...++++++.--.+.-.+.... ....+.-.-+++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHH
Confidence 3477788899999999999988776 5666766666677777777776666554443221 1112222233333333333
Q ss_pred hHHHHHH---------------HHhhCC-CCcCcccHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048533 218 KVEKLLC---------------EMEFKD-VRADLFTYNTL-IALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGF 280 (591)
Q Consensus 218 ~a~~~~~---------------~~~~~~-~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 280 (591)
+|.+.++ .+.... -+|....|..+ ..++.-.|++++|.+.-....+.... +......-..++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~ 213 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCL 213 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhccccc
Confidence 3333322 111111 11222333333 24555678888888777666654211 222222222334
Q ss_pred HhcCCHHHHHHHHHHhhcCCCChhhHH-------------HHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHH
Q 048533 281 CREGRMREARRLFRDIKGATPNHVTYT-------------TLIDGYCRANDLEEALRLREVMAAKG---VYPGVVTYNSI 344 (591)
Q Consensus 281 ~~~g~~~~A~~~~~~~~~~~~~~~~~~-------------~li~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~l 344 (591)
.-.++.+.|...|.+.....|+...-. .-..-..+.|.+..|.+.|.+.+... ..|+...|-..
T Consensus 214 yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 214 YYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 456778888888888877666543221 12233456677777777777776542 33344445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChHHH---HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048533 345 LRKLCKEGRIRDANRLLNEMNEKKIAPDNVTC---NTLINAYCKIGDTASAMKVKNRMLEA 402 (591)
Q Consensus 345 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~ 402 (591)
.....+.|+..+|+.--+...+. |..-. ..-..++.-.+++++|.+-+++..+.
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55566677777777776666654 33222 22223445566777777777766554
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.78 E-value=0.00059 Score=58.16 Aligned_cols=94 Identities=7% Similarity=-0.095 Sum_probs=69.2
Q ss_pred hHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHH
Q 048533 40 STAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNAL 119 (591)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (591)
.......++..+...|++++|+..|+.+.+..|+.+....++..++.++.+.|++++|+..++++....+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------- 103 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP---------- 103 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----------
Confidence 3444556666677779999999999999986665222356788999999999999999999999887542
Q ss_pred HhhcCCCCCccchHHHHHHHHHhcCChHHHHH
Q 048533 120 VKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQ 151 (591)
Q Consensus 120 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 151 (591)
.+...+..++.+|...|+...+..
T Consensus 104 --------~~~~~~~~lg~~~~~~g~~~~a~~ 127 (172)
T PRK02603 104 --------KQPSALNNIAVIYHKRGEKAEEAG 127 (172)
T ss_pred --------ccHHHHHHHHHHHHHcCChHhHhh
Confidence 334455566777777777544443
No 173
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.77 E-value=0.00036 Score=66.97 Aligned_cols=122 Identities=17% Similarity=0.099 Sum_probs=95.4
Q ss_pred ccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHH
Q 048533 162 MPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQL--GVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYN 239 (591)
Q Consensus 162 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (591)
+.+......+++.+....+.+.+..++.+.... ....-..|..++++.|.+.|..+.+..+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 346666777778777777888888888877654 222234556788999999999999999999888899999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048533 240 TLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCRE 283 (591)
Q Consensus 240 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 283 (591)
.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999988887776666767776666666655
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.77 E-value=6.8e-05 Score=54.99 Aligned_cols=80 Identities=15% Similarity=0.158 Sum_probs=54.1
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHHcCChhHHH
Q 048533 456 KNNEEALLKLLDEFVSRGLC-VDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILG-DSVIYTSLAYAYWRAGEPKACS 533 (591)
Q Consensus 456 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 533 (591)
.|+++.|+.+++++.+..+. ++...+..+..+|.+.|++++|..++++ .+ ..| +......+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 56778888888888876442 2445555678888888888888888877 32 222 2344556678888888888888
Q ss_pred HHHHH
Q 048533 534 DILDD 538 (591)
Q Consensus 534 ~~~~~ 538 (591)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88775
No 175
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.76 E-value=0.055 Score=53.96 Aligned_cols=227 Identities=13% Similarity=0.032 Sum_probs=143.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 048533 135 WLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSS 214 (591)
Q Consensus 135 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 214 (591)
..=.+|.++|++... ++..++.... +...-..=+. +--|.+++|.++|-++-+++ ..+..+.+.|
T Consensus 710 tAE~AFVrc~dY~Gi-k~vkrl~~i~---s~~~q~aei~--~~~g~feeaek~yld~drrD---------LAielr~klg 774 (1189)
T KOG2041|consen 710 TAEHAFVRCGDYAGI-KLVKRLRTIH---SKEQQRAEIS--AFYGEFEEAEKLYLDADRRD---------LAIELRKKLG 774 (1189)
T ss_pred hHhhhhhhhccccch-hHHHHhhhhh---hHHHHhHhHh--hhhcchhHhhhhhhccchhh---------hhHHHHHhhh
Confidence 344578889988643 3333433321 1111122222 23489999999998886653 2467888899
Q ss_pred ChhhHHHHHHHHhhCC-CCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048533 215 DVDKVEKLLCEMEFKD-VRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLF 293 (591)
Q Consensus 215 ~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 293 (591)
++-...++++.-.... -..-..+|+.+...+.....+++|.+.|..-.. ....+.++.+..++++-..+-
T Consensus 775 DwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecly~le~f~~LE~la 845 (1189)
T KOG2041|consen 775 DWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECLYRLELFGELEVLA 845 (1189)
T ss_pred hHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHHHHHHhhhhHHHHH
Confidence 9988888776532210 011245789999999999999999999875432 123577788888888777776
Q ss_pred HHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 048533 294 RDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDN 373 (591)
Q Consensus 294 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 373 (591)
..+. .+....-.+..++.+.|.-++|.+.|-+. + .|. ..+..|...+++.+|.++-+...-. ..
T Consensus 846 ~~Lp---e~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~pk-----aAv~tCv~LnQW~~avelaq~~~l~----qv 909 (1189)
T KOG2041|consen 846 RTLP---EDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LPK-----AAVHTCVELNQWGEAVELAQRFQLP----QV 909 (1189)
T ss_pred HhcC---cccchHHHHHHHHHhhchHHHHHHHHHhc---c-CcH-----HHHHHHHHHHHHHHHHHHHHhccch----hH
Confidence 6664 45666777888888899988888776332 2 122 3445666777777777766543211 11
Q ss_pred HH--------------HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048533 374 VT--------------CNTLINAYCKIGDTASAMKVKNRMLE 401 (591)
Q Consensus 374 ~~--------------~~~li~~~~~~~~~~~a~~~~~~~~~ 401 (591)
.+ ..--|..+.+.|+.-.|-+++.+|.+
T Consensus 910 ~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 910 QTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 11 12235667778877777777777754
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.76 E-value=0.0015 Score=60.70 Aligned_cols=153 Identities=10% Similarity=0.078 Sum_probs=88.6
Q ss_pred ChHHHHHHHHHHhhC----CCc-cCHHhHHHHHHHHHhc-CChhHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHcc
Q 048533 145 MTQDGLQVFDQMRVH----NLM-PHLHACTVLLNSLAKD-RLTDMVWKVYKKMVQL----GVV-ANIHLYNVLIHACCKS 213 (591)
Q Consensus 145 ~~~~A~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~ 213 (591)
++++|+..++++... |-. .-...+..+...|... |+++.|++.|++..+. +.. .-..++..+...+.+.
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 666666666555432 211 0123455566667666 7888888888877643 211 0124566777888899
Q ss_pred CChhhHHHHHHHHhhCCCCcC-----cc-cHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCC--HHHHHHHHHHHHhc
Q 048533 214 SDVDKVEKLLCEMEFKDVRAD-----LF-TYNTLIALYCKKGMHYEALAVQDRMEREG--ISPD--IVTYNSLIHGFCRE 283 (591)
Q Consensus 214 g~~~~a~~~~~~~~~~~~~~~-----~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~p~--~~~~~~l~~~~~~~ 283 (591)
|++++|.++|+++...-...+ .. .+...+-++...|+...|...+++..... +..+ ......|+.++-..
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~ 248 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG 248 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC
Confidence 999999999998876432211 11 23334456667889999999999887652 2222 33455666666542
Q ss_pred --CCHHHHHHHHHHhh
Q 048533 284 --GRMREARRLFRDIK 297 (591)
Q Consensus 284 --g~~~~A~~~~~~~~ 297 (591)
..+..++.-|+.+.
T Consensus 249 D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 249 DVEAFTEAVAEYDSIS 264 (282)
T ss_dssp -CCCHHHHCHHHTTSS
T ss_pred CHHHHHHHHHHHcccC
Confidence 34666666666554
No 177
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.75 E-value=5.7e-05 Score=52.20 Aligned_cols=59 Identities=15% Similarity=0.056 Sum_probs=51.1
Q ss_pred HhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCC
Q 048533 48 LNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDF 109 (591)
Q Consensus 48 ~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 109 (591)
+..+...|++++|+..|+.+++..|+ +..++..++.++.+.|++++|...|+.+.+..|
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD---NPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 34455569999999999999998876 899999999999999999999999999988664
No 178
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.0018 Score=57.56 Aligned_cols=89 Identities=17% Similarity=0.085 Sum_probs=46.5
Q ss_pred HHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCH
Q 048533 86 HILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHL 165 (591)
Q Consensus 86 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 165 (591)
.-+.+.++|++|+..|..+++.. |.++..|..-+.+|.+.|+++.|++=.+..+..++. ..
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~------------------P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-ys 149 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD------------------PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YS 149 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC------------------CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HH
Confidence 34444555555555555555433 334444445555555555555555555555555433 34
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048533 166 HACTVLLNSLAKDRLTDMVWKVYKKMVQ 193 (591)
Q Consensus 166 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 193 (591)
.+|..|..+|...|++++|++.|.+.+.
T Consensus 150 kay~RLG~A~~~~gk~~~A~~aykKaLe 177 (304)
T KOG0553|consen 150 KAYGRLGLAYLALGKYEEAIEAYKKALE 177 (304)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHhhhc
Confidence 4555555555555555555555555554
No 179
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.72 E-value=0.00078 Score=57.12 Aligned_cols=96 Identities=13% Similarity=0.251 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH----------------cCChhHHHHH
Q 048533 477 DVSVYRALIRRFCK-----KEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWR----------------AGEPKACSDI 535 (591)
Q Consensus 477 ~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----------------~g~~~~A~~~ 535 (591)
+-.+|..+++.|.+ .|.++-....++.|.+.|+.-|..+|+.|++.+=+ -.+.+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 34444444444432 24444444455555555555555555555554432 1234568999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHhhhcchhHHHHHHHHH
Q 048533 536 LDDMYRRRLMITLKIYRSFSASYAKDNEILDLFWSHV 572 (591)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~ 572 (591)
+++|...|+.||..++..|++.|++.+-..+.+|.+|
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmm 162 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMM 162 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHH
Confidence 9999999999999999999999999998888777766
No 180
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.72 E-value=0.0035 Score=54.94 Aligned_cols=59 Identities=14% Similarity=-0.021 Sum_probs=49.0
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLS 111 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 111 (591)
..|++.+|+..|+.+....|..+....+.+.++.++.+.|++++|+..++..++..|.+
T Consensus 17 ~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~ 75 (203)
T PF13525_consen 17 QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS 75 (203)
T ss_dssp HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 35999999999999999999877778888999999999999999999999998876543
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.69 E-value=0.0006 Score=57.93 Aligned_cols=68 Identities=9% Similarity=-0.242 Sum_probs=54.0
Q ss_pred HHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCC
Q 048533 42 AIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDF 109 (591)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 109 (591)
.....++..+...|++++|+..|+.++...|+......++..++.++...|++++|+..++++....+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~ 103 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP 103 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 33445566666679999999999999887665222346888999999999999999999999987643
No 182
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.68 E-value=0.0011 Score=61.32 Aligned_cols=131 Identities=13% Similarity=0.057 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 374 VTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCK-AKEMDIAKELLFGMLDAGFSPSYCSYSWLVDG 452 (591)
Q Consensus 374 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (591)
.+|..+++..-+.+..+.|+.+|.++.+.+ ..+...|......-.. .++.+.|..+|+..++. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666666666666777777777776432 2233444444444222 45555577777766653 34455566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 453 YCNKNNEEALLKLLDEFVSRGLCVD---VSVYRALIRRFCKKEKVDYAQRLFNLMQGN 507 (591)
Q Consensus 453 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 507 (591)
+...++.+.|..+|++.+.. +.++ ...|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66666777777777666654 2222 236666666666666666666666666653
No 183
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.033 Score=48.65 Aligned_cols=251 Identities=15% Similarity=0.107 Sum_probs=142.1
Q ss_pred CCCHHHHHH-HHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCcc--chHHHH-HHHHHhcCChHHHH
Q 048533 75 KHSLQSHWT-MIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNS--HVLSWL-VIFYANLKMTQDGL 150 (591)
Q Consensus 75 ~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l-~~~~~~~~~~~~A~ 150 (591)
+++.-.+|+ -..++.+...+++|..-++.....+.+ .-.++..-..+.+-...- -...++ +.+....|++.+.+
T Consensus 65 t~~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~p--dl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesL 142 (366)
T KOG2796|consen 65 TTDSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQP--DLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESL 142 (366)
T ss_pred chhHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCc--ceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHH
Confidence 445555665 477888999999988777665543211 000010000000000000 011111 22333445555555
Q ss_pred HHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCC
Q 048533 151 QVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKD 230 (591)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 230 (591)
.-+..+... ....++.+-.....+.-++.+++-. ..+-+.++..+.-.|.+.-...++.++++++
T Consensus 143 dRl~~L~~~--------V~~ii~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~ 207 (366)
T KOG2796|consen 143 DRLHKLKTV--------VSKILANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYY 207 (366)
T ss_pred HHHHHHHHH--------HHHHHHHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhC
Confidence 444433321 1122222222223344455554432 2344567777777888888888888888877
Q ss_pred CCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHhhcCCC-Chh
Q 048533 231 VRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYN-----SLIHGFCREGRMREARRLFRDIKGATP-NHV 304 (591)
Q Consensus 231 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~ 304 (591)
.+.++.....|++.-.+.|+.+.|...|++..+..-..|..+++ .....|.-.+++..|...+.++....| |..
T Consensus 208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~ 287 (366)
T KOG2796|consen 208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV 287 (366)
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence 66777778888888888899999999888776543233333333 333445566788888888888776444 444
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048533 305 TYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSI 344 (591)
Q Consensus 305 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 344 (591)
.-|.-.-+..-.|+..+|++.++.|... .|...+-+.+
T Consensus 288 a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 288 ANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 4555555555578888888888888876 4444444433
No 184
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.62 E-value=0.0014 Score=49.02 Aligned_cols=76 Identities=18% Similarity=0.368 Sum_probs=47.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHhCCCCCChHHHHH
Q 048533 308 TLIDGYCRANDLEEALRLREVMAAKGV-YPGVVTYNSILRKLCKEGR--------IRDANRLLNEMNEKKIAPDNVTCNT 378 (591)
Q Consensus 308 ~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~ 378 (591)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- +-+.+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555777777777777777777 7777777777777665432 2334455555555555555555555
Q ss_pred HHHHH
Q 048533 379 LINAY 383 (591)
Q Consensus 379 li~~~ 383 (591)
++..+
T Consensus 110 vl~~L 114 (120)
T PF08579_consen 110 VLGSL 114 (120)
T ss_pred HHHHH
Confidence 55544
No 185
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.61 E-value=0.00018 Score=49.66 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=36.7
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 84 MIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 84 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
++..+.+.|++++|+..|+.+.+.. |.+..++..++.++.+.|++++|+..|+++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD------------------PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS------------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4556666667777776666666543 3445566666666666666666666666666543
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.60 E-value=0.00016 Score=50.49 Aligned_cols=53 Identities=13% Similarity=0.166 Sum_probs=48.3
Q ss_pred CCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCC
Q 048533 54 CHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDF 109 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 109 (591)
.|++++|+..|+.+....|+ +..++..++.++.+.|++++|.++++++....+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD---NPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT---SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred ccCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 48999999999999998887 899999999999999999999999999988764
No 187
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.59 E-value=0.0013 Score=60.93 Aligned_cols=130 Identities=12% Similarity=0.107 Sum_probs=80.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAK-DRLTDMVWKVYKKMVQLGVVANIHLYNVLIHAC 210 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 210 (591)
+|..++....+.+..+.|..+|.++++.+. .+...|...+..-.. .++.+.|.++|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 355566666777777778888877775432 244445444444233 55666677787777765 333667777777777
Q ss_pred HccCChhhHHHHHHHHhhCCCCcCc---ccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 211 CKSSDVDKVEKLLCEMEFKDVRADL---FTYNTLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
.+.|+.+.|..+|++.... ++++. ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777654 22222 36667777666777777777776666653
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.57 E-value=0.0056 Score=47.74 Aligned_cols=105 Identities=23% Similarity=0.219 Sum_probs=68.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC----HHHHHHHHHH
Q 048533 449 LVDGYCNKNNEEALLKLLDEFVSRGLCVD--VSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGD----SVIYTSLAYA 522 (591)
Q Consensus 449 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~ 522 (591)
+..++-..|+.++|+.+|++....|...+ ...+-.+...+...|++++|..++++.... .|+ ......+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHH
Confidence 34556677888888888888887765533 345566777777888888888888877764 122 2333444557
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhh
Q 048533 523 YWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYA 559 (591)
Q Consensus 523 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 559 (591)
+...|+.++|...+-..... +...|..=|..|.
T Consensus 85 L~~~gr~~eAl~~~l~~la~----~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALAE----TLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 77788888888877666552 3335655555554
No 189
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.56 E-value=0.00028 Score=49.40 Aligned_cols=64 Identities=16% Similarity=0.214 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcC-ChHHHHHHHHHH
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLK-MTQDGLQVFDQM 156 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~ 156 (591)
..++..++..+.+.|++++|+..|+++.+.+ |.+..++..++.+|...| ++++|++.+++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~------------------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD------------------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS------------------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 4556666777777777777777777766654 334455666666666666 567777766666
Q ss_pred hhC
Q 048533 157 RVH 159 (591)
Q Consensus 157 ~~~ 159 (591)
++.
T Consensus 65 l~l 67 (69)
T PF13414_consen 65 LKL 67 (69)
T ss_dssp HHH
T ss_pred HHc
Confidence 554
No 190
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.55 E-value=0.0098 Score=48.90 Aligned_cols=147 Identities=8% Similarity=0.011 Sum_probs=98.2
Q ss_pred ChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHH
Q 048533 56 IPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSW 135 (591)
Q Consensus 56 ~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (591)
||+.++.--......-| ++.-...++.++.+.|++.+|...|++....- +..++..+..
T Consensus 71 dP~R~~Rea~~~~~~Ap----Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~-----------------fA~d~a~lLg 129 (251)
T COG4700 71 DPERHLREATEELAIAP----TVQNRYRLANALAELGRYHEAVPHYQQALSGI-----------------FAHDAAMLLG 129 (251)
T ss_pred ChhHHHHHHHHHHhhch----hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc-----------------cCCCHHHHHH
Confidence 56655555544444333 45556678888899999999999988876532 2345556666
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCc-cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 048533 136 LVIFYANLKMTQDGLQVFDQMRVHNLM-PHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSS 214 (591)
Q Consensus 136 l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 214 (591)
+.++....+++..|...++.+.+.++. .+..+...+.+.+...|.+..|...|+.....-+.|.... .....+.+.|
T Consensus 130 lA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~--~Y~e~La~qg 207 (251)
T COG4700 130 LAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARI--YYAEMLAKQG 207 (251)
T ss_pred HHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHH--HHHHHHHHhc
Confidence 777788888888888888888776531 1233566777888888888888888888887644433333 3445566777
Q ss_pred ChhhHHHHHHH
Q 048533 215 DVDKVEKLLCE 225 (591)
Q Consensus 215 ~~~~a~~~~~~ 225 (591)
+.+++..-+..
T Consensus 208 r~~ea~aq~~~ 218 (251)
T COG4700 208 RLREANAQYVA 218 (251)
T ss_pred chhHHHHHHHH
Confidence 66665544333
No 191
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.55 E-value=0.0018 Score=57.16 Aligned_cols=90 Identities=11% Similarity=0.021 Sum_probs=51.0
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHH
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLS 134 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (591)
|++..|...|...++..|+.+....+++-|+..+...|++++|...|..+.+..+. .+.-++.+.
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~---------------s~KApdall 219 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK---------------SPKAPDALL 219 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC---------------CCCChHHHH
Confidence 55666666666666666665555555555666666666666666666555554321 233334455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhC
Q 048533 135 WLVIFYANLKMTQDGLQVFDQMRVH 159 (591)
Q Consensus 135 ~l~~~~~~~~~~~~A~~~~~~~~~~ 159 (591)
.++....+.|+.++|...|+++.+.
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5555555566666666666555554
No 192
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.54 E-value=0.0023 Score=47.87 Aligned_cols=77 Identities=14% Similarity=0.195 Sum_probs=48.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 343 SILRKLCKEGRIRDANRLLNEMNEKKI-APDNVTCNTLINAYCKIG--------DTASAMKVKNRMLEAGLMLDQFTYKA 413 (591)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 413 (591)
..|..+...+++.....+|+.+...|+ .|+..+|+.++.+.++.. ++...+.+|++|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555777777777777777777 677777777777766532 23345555556655556666666665
Q ss_pred HHHHHH
Q 048533 414 LIHGFC 419 (591)
Q Consensus 414 l~~~~~ 419 (591)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 555443
No 193
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.53 E-value=0.00024 Score=49.78 Aligned_cols=63 Identities=17% Similarity=0.080 Sum_probs=55.2
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCC-CchHHHHHHHHHHHcC
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNK-HFKSAQNMLEKIALRD 108 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 108 (591)
+...++..+...|++++|+..|+.+++..|+ +..++..++.++.+.| ++++|++.++++++.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~---~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPN---NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT---HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 3445566677789999999999999999887 8899999999999999 7999999999998765
No 194
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.52 E-value=0.0079 Score=60.57 Aligned_cols=65 Identities=20% Similarity=0.154 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 477 DVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 477 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
++..|..+.-.....|++++|...++++.+. .|+...|..+..++...|++++|...++++.+.+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4455665655555667777777777777764 3466667777777777777777777777776643
No 195
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.49 E-value=0.042 Score=48.36 Aligned_cols=195 Identities=11% Similarity=0.049 Sum_probs=106.6
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+...+..-+....+.|++++|.+.|+.+..+.+.+ +-.+.+...++-++.+.+++++|+..+++.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s---------------~~~~qa~l~l~yA~Yk~~~y~~A~~~~drF 97 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFS---------------PYSEQAQLDLAYAYYKNGEYDLALAYIDRF 97 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------------cccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34555666777788899999999999888766543 223455566777888899999999999998
Q ss_pred hhCCCccCHHhHHHHHHHHHhc-------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhC
Q 048533 157 RVHNLMPHLHACTVLLNSLAKD-------RLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFK 229 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 229 (591)
.+..+......|...|.+++.- +|...+.+.+..+.+ ++.-|=...-...|..-+..+...
T Consensus 98 i~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~ 165 (254)
T COG4105 98 IRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDA 165 (254)
T ss_pred HHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHH
Confidence 8876554445566666666532 222222222222221 111111111111111111111100
Q ss_pred CCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCh
Q 048533 230 DVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPD---IVTYNSLIHGFCREGRMREARRLFRDIKGATPNH 303 (591)
Q Consensus 230 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 303 (591)
=..-=..+...|.+.|.+..|..-++.|.+. .+-+ ...+-.+..+|...|-.++|.+.-.-+....|+.
T Consensus 166 ----LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 166 ----LAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred ----HHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 0000012445566777777777777777665 2111 2334455666667777776666666555445544
No 196
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.16 Score=52.11 Aligned_cols=180 Identities=16% Similarity=0.182 Sum_probs=123.1
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 82 WTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 82 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
..-+..+.+...|+-|+.+-+.-.. +..... .+...-+..+.+.|++++|...|-+.+.. .
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~-----d~d~~~-------------~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-l 398 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHL-----DEDTLA-------------EIHRKYGDYLYGKGDFDEATDQYIETIGF-L 398 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCC-----CHHHHH-------------HHHHHHHHHHHhcCCHHHHHHHHHHHccc-C
Confidence 3456777888888888887544221 112222 33344555678899999999988777654 1
Q ss_pred ccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHH
Q 048533 162 MPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTL 241 (591)
Q Consensus 162 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (591)
.| ..++.-+........-...++.+.+.|.. +...-..|+.+|.+.++.++..++.+... .|.. ..-....
T Consensus 399 e~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~a 469 (933)
T KOG2114|consen 399 EP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETA 469 (933)
T ss_pred Ch-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHH
Confidence 22 24556666666677777888899999987 66677789999999999999888887765 3321 2235567
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048533 242 IALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIK 297 (591)
Q Consensus 242 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 297 (591)
+..+.+.+-.++|.-+-.+... .......++ -..+++++|++++..++
T Consensus 470 l~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 470 LEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 7778888888888776655443 334444433 45789999999998874
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.049 Score=47.65 Aligned_cols=161 Identities=12% Similarity=0.103 Sum_probs=117.8
Q ss_pred HHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhH
Q 048533 140 YANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKV 219 (591)
Q Consensus 140 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 219 (591)
+......+..+++|++=.. ...+.+++.+.-.|.+.-....+.+..+.+.+.+......+.+.-.+.|+.+.|
T Consensus 159 ~e~~~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a 231 (366)
T KOG2796|consen 159 LEQGLAEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTA 231 (366)
T ss_pred HHhccchhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHH
Confidence 3333344556666654332 356778888888899999999999999988777888889999999999999999
Q ss_pred HHHHHHHhhCCCCcCcccHHHHH-----HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048533 220 EKLLCEMEFKDVRADLFTYNTLI-----ALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFR 294 (591)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 294 (591)
..+|+...+..-+.|..+.+.++ ..+.-.+++.+|...+.++...+.. |+...|.-.-+..-.|+...|++.++
T Consensus 232 ~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e 310 (366)
T KOG2796|consen 232 EKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLE 310 (366)
T ss_pred HHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHH
Confidence 99999877654455555555544 3455677888999999888776433 55555555555555789999999999
Q ss_pred HhhcCCCChhhHHH
Q 048533 295 DIKGATPNHVTYTT 308 (591)
Q Consensus 295 ~~~~~~~~~~~~~~ 308 (591)
.+....|...+-+.
T Consensus 311 ~~~~~~P~~~l~es 324 (366)
T KOG2796|consen 311 AMVQQDPRHYLHES 324 (366)
T ss_pred HHhccCCccchhhh
Confidence 99887776655443
No 198
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.46 E-value=0.00014 Score=41.32 Aligned_cols=29 Identities=28% Similarity=0.534 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 515 IYTSLAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
+|+.++++|.+.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 199
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.45 E-value=0.0076 Score=60.66 Aligned_cols=63 Identities=16% Similarity=0.033 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 270 IVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAK 332 (591)
Q Consensus 270 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 332 (591)
...|..+.-.....|++++|...+++.....|+...|..+...+...|+.++|.+.+++....
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344544444444556666666666666655555555666666666666666666666665554
No 200
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.45 E-value=0.00048 Score=48.07 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=33.4
Q ss_pred HcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 89 TKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 89 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
.+.|++++|++.|+++...+ |.+..+...++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~------------------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN------------------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT------------------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 35666677777776666644 3344555566666677777777777766666653
No 201
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.44 E-value=0.0018 Score=59.91 Aligned_cols=133 Identities=15% Similarity=0.075 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CC-CCCCh
Q 048533 304 VTYTTLIDGYCRANDLEEALRLREVMA----AKGVY-PGVVTYNSILRKLCKEGRIRDANRLLNEMNE----KK-IAPDN 373 (591)
Q Consensus 304 ~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~ 373 (591)
.+|..+...|.-.|+++.|+...+.-. +.|-+ .....+..+..++.-.|+++.|.+.|+.... .| -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456666666777788888876644322 22211 1234567777788888888888888875432 22 12233
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048533 374 VTCNTLINAYCKIGDTASAMKVKNRMLEA-----GLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLD 436 (591)
Q Consensus 374 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 436 (591)
.+..+|.+.|.-..++++|+.++.+-... ...-....+.+|..+|...|..++|..+.+..++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45667778888778888888877654321 1122456788888888888888888877666543
No 202
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.44 E-value=0.00022 Score=40.46 Aligned_cols=29 Identities=45% Similarity=0.901 Sum_probs=17.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048533 305 TYTTLIDGYCRANDLEEALRLREVMAAKG 333 (591)
Q Consensus 305 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 333 (591)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45556666666666666666666655544
No 203
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.43 E-value=0.0033 Score=58.24 Aligned_cols=133 Identities=16% Similarity=0.058 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCCH
Q 048533 374 VTCNTLINAYCKIGDTASAMKVKNRMLE----AGLM-LDQFTYKALIHGFCKAKEMDIAKELLFGMLD----AGF-SPSY 443 (591)
Q Consensus 374 ~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~ 443 (591)
..|..|.+.|.-.|+++.|+...+.-.. .|-. .....+..+..++.-.|+++.|.+.|+.... .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3455566666667777777766544321 1211 1234566677777777888888777765442 221 1123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 444 CSYSWLVDGYCNKNNEEALLKLLDEFVSR-----GLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQG 506 (591)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 506 (591)
....+|...|.-..+++.|+.++++-... +..-...++.+|..+|...|..++|..+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34445666666677777777777654321 1112456677788888888888888777766543
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.40 E-value=0.0044 Score=56.25 Aligned_cols=104 Identities=11% Similarity=0.006 Sum_probs=76.7
Q ss_pred HHHHHHHHH-HHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 79 QSHWTMIHI-LTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 79 ~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
...+..+.. +.+.|++++|+..|+...+..|.+ +..++++.|++.+|...|++++|+..|+.+.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s---------------~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv 207 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS---------------TYQPNANYWLGQLNYNKGKKDDAAYYFASVV 207 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444 466799999999999988865432 2234678899999999999999999999998
Q ss_pred hCCCc--cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 158 VHNLM--PHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV 197 (591)
Q Consensus 158 ~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (591)
+..+. ....++..+..++...|+.+.|..+|+.+.+..+.
T Consensus 208 ~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 208 KNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 75332 13455666677788889999999999988876543
No 205
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.2 Score=50.70 Aligned_cols=108 Identities=16% Similarity=0.151 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 410 TYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFC 489 (591)
Q Consensus 410 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 489 (591)
+.+--+.-+...|+..+|.++-.+.. -|+...|..-+.+++..+++++-+++-+... .+.-|...+.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34445555667788888877776664 4777777777888888888877666654433 2344667778888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHH
Q 048533 490 KKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDIL 536 (591)
Q Consensus 490 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 536 (591)
+.|+.++|.+++-+.... .-.+.+|.+.|++.+|.++-
T Consensus 756 ~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHH
Confidence 888888888877665421 15677888888888877653
No 206
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.38 E-value=0.059 Score=44.52 Aligned_cols=135 Identities=10% Similarity=-0.016 Sum_probs=92.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 048533 405 MLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLC-VDVSVYRA 483 (591)
Q Consensus 405 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ 483 (591)
.|+...-..|..+..+.|+..+|...|++....-+.-|....-.+.++....+++..|...++.+.+.++. -++.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45666666677777888888888888888776555667777777777777788888888888887765321 02223345
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 484 LIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 484 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
+.+.+...|.+..|...|+..... -|+...-......+.++|+..++..-+..+.+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 667778888888888888888874 45655555555667777777766554444443
No 207
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.28 E-value=0.0078 Score=51.24 Aligned_cols=113 Identities=19% Similarity=0.292 Sum_probs=66.0
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048533 291 RLFRDIKGATPNHVTYTTLIDGYCR-----ANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMN 365 (591)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 365 (591)
..|+.......+..+|..+++.|.+ .|..+-....+..|.+-|+.-|..+|+.|+..+=+ |.+- -..+|+.+-
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F 112 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF 112 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh
Confidence 3444443345566666666666653 46777777778888888888888888888887654 2211 111111111
Q ss_pred hCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048533 366 EKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAK 422 (591)
Q Consensus 366 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 422 (591)
-+ | ..+.+-|++++++|...|+-||..++..++..+.+.+
T Consensus 113 ~h---------------y--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 113 MH---------------Y--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred cc---------------C--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 10 0 1233445666666666666666666666666666544
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.28 E-value=0.00087 Score=47.54 Aligned_cols=59 Identities=12% Similarity=-0.012 Sum_probs=53.2
Q ss_pred HhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCC
Q 048533 48 LNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDF 109 (591)
Q Consensus 48 ~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 109 (591)
..++.+.++++.|+..++.+++..|. +...+...+.++.+.|++.+|...|+++.+.++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD---DPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc---cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 45566779999999999999998887 888999999999999999999999999998765
No 209
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.014 Score=52.48 Aligned_cols=99 Identities=16% Similarity=0.035 Sum_probs=42.2
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---ChhhHHHHHHHHhhCCCCcCcccHHH
Q 048533 164 HLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSS---DVDKVEKLLCEMEFKDVRADLFTYNT 240 (591)
Q Consensus 164 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (591)
|...|-.|..+|...|+++.|...|....+...+ +...+..+..++.... ...++..+|+++...+ +-|+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 4444444444444444444444444444444322 3333333333332221 1233444444444432 223334444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC
Q 048533 241 LIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 241 li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 444444444444444444444443
No 210
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.18 E-value=0.0095 Score=52.77 Aligned_cols=102 Identities=14% Similarity=0.043 Sum_probs=83.8
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 81 HWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 81 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
.+..+..+.+.|+|..|.+.|..-.+..|. .+-.++.+.||+.++..+|++++|..+|..+.+.-
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~---------------s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~ 208 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN---------------STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY 208 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------------CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC
Confidence 456677788899999999999988876653 34567899999999999999999999999998864
Q ss_pred Cc-c-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 161 LM-P-HLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV 197 (591)
Q Consensus 161 ~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (591)
++ | -..++-.|..+..+.|+.+.|..+|+++.+.-+.
T Consensus 209 P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 209 PKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred CCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 33 1 2467888888999999999999999999887544
No 211
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.13 E-value=0.023 Score=45.26 Aligned_cols=59 Identities=7% Similarity=-0.068 Sum_probs=54.0
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLS 111 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 111 (591)
..|+++.|.+.|+.+..+.|..+....+...++.++.+.|++++|+..+++.++.+|.+
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 35999999999999999999988888999999999999999999999999999987643
No 212
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.08 E-value=0.27 Score=46.21 Aligned_cols=104 Identities=16% Similarity=0.162 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048533 377 NTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNK 456 (591)
Q Consensus 377 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (591)
+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-..+... +-++.-|..++.+|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 333444445555555544433331 24555555555555555555554443221 11223455555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048533 457 NNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRL 500 (591)
Q Consensus 457 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 500 (591)
|+..+|..++..+ + +..-+..|.+.|++.+|.+.
T Consensus 251 ~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 251 GNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 5555555554441 1 12334445555555555443
No 213
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.07 E-value=0.065 Score=52.99 Aligned_cols=38 Identities=24% Similarity=0.476 Sum_probs=24.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048533 256 AVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDI 296 (591)
Q Consensus 256 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 296 (591)
.-+++++++|-.|+... +...++-.|++.+|-++|.+.
T Consensus 621 ~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 621 SELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence 34566777777777654 334455577788888877654
No 214
>PRK15331 chaperone protein SicA; Provisional
Probab=97.04 E-value=0.026 Score=46.04 Aligned_cols=122 Identities=9% Similarity=0.045 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHhccccchhcCCCCCCCCChHHHHHH---HHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 048533 11 TKFIKTISAIMLKGHWAKLLNPNIASSLTSTAIHKV---LLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHI 87 (591)
Q Consensus 11 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~ 87 (591)
..++..|...+..|.-.. ....+++..+..+ --.++ ..|+++.|..+|+.+...+|. +.+-+..|+.+
T Consensus 10 ~~~~~~i~~al~~G~tlk-----~l~gis~~~le~iY~~Ay~~y-~~Gk~~eA~~~F~~L~~~d~~---n~~Y~~GLaa~ 80 (165)
T PRK15331 10 ERVAEMIWDAVSEGATLK-----DVHGIPQDMMDGLYAHAYEFY-NQGRLDEAETFFRFLCIYDFY---NPDYTMGLAAV 80 (165)
T ss_pred HHHHHHHHHHHHCCCCHH-----HHhCCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcC---cHHHHHHHHHH
Confidence 345566666655542211 1123334433333 22333 458899999999988776654 56656678888
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048533 88 LTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVH 159 (591)
Q Consensus 88 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 159 (591)
+...+++++|+..|......+ ..++......+.+|...|+.++|...|+.....
T Consensus 81 ~Q~~k~y~~Ai~~Y~~A~~l~------------------~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 81 CQLKKQFQKACDLYAVAFTLL------------------KNDYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHcc------------------cCCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 888899999988887765533 334455667788888888888898888888773
No 215
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.025 Score=52.95 Aligned_cols=137 Identities=15% Similarity=0.068 Sum_probs=91.3
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHc----CCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048533 83 TMIHILTKNKHFKSAQNMLEKIALR----DFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRV 158 (591)
Q Consensus 83 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 158 (591)
.-+..|.+.|+|..|...|+++... ...+...- .... .....++..++.+|.+.+.+.+|++..++.+.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~-~~~~------~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQ-KKAE------ALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHH-HHHH------HHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 3466889999999999999987652 11111000 0000 01113566677788888888888888888888
Q ss_pred CCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhh-HHHHHHHHhh
Q 048533 159 HNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDK-VEKLLCEMEF 228 (591)
Q Consensus 159 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~ 228 (591)
.+.. |..++-.-..++...|+++.|+..|+.+.+..+. |..+-+.++.+-.+...... ..++|..|..
T Consensus 286 ~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 286 LDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred cCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7755 7778878888888888888888888888887554 55555666655555544433 3566776654
No 216
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.99 E-value=0.36 Score=46.09 Aligned_cols=129 Identities=9% Similarity=-0.056 Sum_probs=70.8
Q ss_pred HHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHH
Q 048533 41 TAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALV 120 (591)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 120 (591)
+.+...+.+.+.. ++.+.-........+..| ++.....-.+-..-+.+.+.+|.+.+..=..+-....+...+.-+
T Consensus 46 Evl~grilnAffl-~nld~Me~~l~~l~~~~~---~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni 121 (549)
T PF07079_consen 46 EVLGGRILNAFFL-NNLDLMEKQLMELRQQFG---KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNI 121 (549)
T ss_pred HHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhH
Confidence 4444444444432 444443333333333344 355555556667789999999999887654431111112222111
Q ss_pred hhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc----cCHHhHHHHHHHHH
Q 048533 121 KIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLM----PHLHACTVLLNSLA 176 (591)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~ll~~~~ 176 (591)
+.. -++...-...+..+...|++.+++.+++++...=.+ =+..+|+.++-.+.
T Consensus 122 ~~l---~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmls 178 (549)
T PF07079_consen 122 QQL---FSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLS 178 (549)
T ss_pred HHH---hhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHh
Confidence 100 011122233567788999999999999998765332 46778877554444
No 217
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.95 E-value=0.042 Score=45.26 Aligned_cols=72 Identities=14% Similarity=0.064 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHHHH
Q 048533 480 VYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYR-----RRLMITLKIYR 552 (591)
Q Consensus 480 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 552 (591)
+...++..+...|++++|.++.+.+.... +.+...|..++.+|...|+..+|.+.|+++.+ .|+.|++.+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 45666777788899999999999998853 34668899999999999999999999988865 38888877643
No 218
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.95 E-value=0.66 Score=48.61 Aligned_cols=193 Identities=13% Similarity=0.098 Sum_probs=114.0
Q ss_pred ChhHHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHH-cCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccch
Q 048533 56 IPSLSCAFFKWAESAVPNYKHS--LQSHWTMIHILT-KNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHV 132 (591)
Q Consensus 56 ~~~~A~~~f~~~~~~~p~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (591)
-...|+..++.+.+ .+..++. ..++..++.+|. ...++++|...+++.....-. ..+..- .-..
T Consensus 36 LI~~ai~CL~~~~~-~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~----------k~~~ 102 (608)
T PF10345_consen 36 LIATAIKCLEAVLK-QFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTDL----------KFRC 102 (608)
T ss_pred HHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHH----------HHHH
Confidence 35677888888875 2333333 355667888887 679999999999987654322 111110 0122
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCC----ccCHHhHHHH-HHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHH
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHNL----MPHLHACTVL-LNSLAKDRLTDMVWKVYKKMVQLG---VVANIHLYN 204 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~ 204 (591)
-..++..|.+.+... |...+++.++.-- .+-...|..+ +..+...+++..|.+.++.+.... ..|...++-
T Consensus 103 ~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~ 181 (608)
T PF10345_consen 103 QFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA 181 (608)
T ss_pred HHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 334577777777666 9998888776421 2223334444 333333479999999998887543 233444555
Q ss_pred HHHHHHH--ccCChhhHHHHHHHHhhCC---------CCcCcccHHHHHHHHH--hcCChhHHHHHHHHHH
Q 048533 205 VLIHACC--KSSDVDKVEKLLCEMEFKD---------VRADLFTYNTLIALYC--KKGMHYEALAVQDRME 262 (591)
Q Consensus 205 ~ll~~~~--~~g~~~~a~~~~~~~~~~~---------~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~ 262 (591)
.++.+.. ..+..+.+.+.++++.... ..|...+|..+++.++ ..|+++.+.+.++++.
T Consensus 182 ~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 182 SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555443 4465667777776663321 1234556666665544 5677667766655553
No 219
>PRK15331 chaperone protein SicA; Provisional
Probab=96.93 E-value=0.043 Score=44.83 Aligned_cols=90 Identities=8% Similarity=-0.045 Sum_probs=68.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChh
Q 048533 451 DGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPK 530 (591)
Q Consensus 451 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 530 (591)
.-+...|++++|..+|+-+.-.++. +..-|..|..++-..+++++|+..|......+. -|+..+-....++...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 3345788888888888888776654 677778888888888888888888887766542 35555667788888888888
Q ss_pred HHHHHHHHHHHC
Q 048533 531 ACSDILDDMYRR 542 (591)
Q Consensus 531 ~A~~~~~~~~~~ 542 (591)
.|...|+...++
T Consensus 123 ~A~~~f~~a~~~ 134 (165)
T PRK15331 123 KARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHhC
Confidence 888888888874
No 220
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.91 E-value=0.37 Score=45.00 Aligned_cols=321 Identities=13% Similarity=0.081 Sum_probs=199.4
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHH--HHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHh
Q 048533 44 HKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTM--IHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVK 121 (591)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 121 (591)
-+++..++ ..|..+...|+...+ . ..|..| +-+-.-.|+-..|.++-.+..+.-.
T Consensus 59 wwlv~~iw---~sP~t~~Ryfr~rKR-d-------rgyqALStGliAagAGda~lARkmt~~~~~lls------------ 115 (531)
T COG3898 59 WWLVRSIW---ESPYTARRYFRERKR-D-------RGYQALSTGLIAAGAGDASLARKMTARASKLLS------------ 115 (531)
T ss_pred HHHHHHHH---hCcHHHHHHHHHHHh-h-------hHHHHHhhhhhhhccCchHHHHHHHHHHHhhhh------------
Confidence 34455566 568888888887544 2 223333 3445567888888887776553210
Q ss_pred hcCCCCCccchHHHH--HHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 048533 122 IHDDPDGNSHVLSWL--VIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVAN 199 (591)
Q Consensus 122 ~~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 199 (591)
.+..-+..+ .++-.-.|+++.|.+-|+-|... +.-...-+..|.-.--+.|+.+.|.+.-+......+. -
T Consensus 116 ------sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l 187 (531)
T COG3898 116 ------SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-L 187 (531)
T ss_pred ------ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-C
Confidence 111112222 34455679999999999999873 1112222344444445688999999988888776554 4
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHhhCC-CCcCccc--HHHHHHHHH---hcCChhHHHHHHHHHHHCCCCCCHH-H
Q 048533 200 IHLYNVLIHACCKSSDVDKVEKLLCEMEFKD-VRADLFT--YNTLIALYC---KKGMHYEALAVQDRMEREGISPDIV-T 272 (591)
Q Consensus 200 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~--~~~li~~~~---~~g~~~~a~~~~~~~~~~~~~p~~~-~ 272 (591)
...+...+...+..|+++.|+++++.-.... +.++..- -..|+.+-. -.-+...|...-.+..+ ..||.. .
T Consensus 188 ~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPa 265 (531)
T COG3898 188 PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPA 265 (531)
T ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchH
Confidence 5677888999999999999999998865532 2333221 122222211 12345566655555444 355543 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHh
Q 048533 273 YNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAK-GVYP-GVVTYNSILRKLCK 350 (591)
Q Consensus 273 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p-~~~~~~~ll~~~~~ 350 (591)
-..-..++.+.|+..++-++++.+=+..|....+... .+.+.|+.- +.-++...+. .++| +......+..+-..
T Consensus 266 av~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY--~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAld 341 (531)
T COG3898 266 AVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLY--VRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALD 341 (531)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHH--HHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHh
Confidence 3334677889999999999999987766766655433 344566532 2222221111 1223 45566667777788
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCC
Q 048533 351 EGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCK-IGDTASAMKVKNRMLEAG 403 (591)
Q Consensus 351 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~ 403 (591)
.|++..|..--+..... .|....|..|.+.-.. .||-.++...+-+.++..
T Consensus 342 a~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 342 AGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred ccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 89988887776666553 6777788777776544 599999999998888763
No 221
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.88 E-value=0.023 Score=45.20 Aligned_cols=87 Identities=11% Similarity=0.059 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+...+..-+....+.|++++|++.|+.+..+-+.+ +-...+-..++.+|.+.+++++|+..+++.
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g---------------~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFG---------------EYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---------------cccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 45566777888899999999999999999876543 334467778999999999999999999999
Q ss_pred hhCCCccCHHhHHHHHHHHHhc
Q 048533 157 RVHNLMPHLHACTVLLNSLAKD 178 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~ 178 (591)
++.++......|...+.+++.-
T Consensus 74 irLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 74 IRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHhCCCCCCccHHHHHHHHHHH
Confidence 9988765455666666665543
No 222
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.84 E-value=0.4 Score=44.46 Aligned_cols=169 Identities=12% Similarity=0.039 Sum_probs=91.1
Q ss_pred HcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcC-ChHHHHHHHHHHhhC--------
Q 048533 89 TKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLK-MTQDGLQVFDQMRVH-------- 159 (591)
Q Consensus 89 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~-------- 159 (591)
-++|+++.|..++.++.......++.....+.+ ++...+......+ +++.|..++++..+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~----------~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~ 73 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELAR----------VCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMD 73 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHH----------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcc
Confidence 356788888888877766442333333333333 2334444445555 888888888776543
Q ss_pred CCccC-----HHhHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCC
Q 048533 160 NLMPH-----LHACTVLLNSLAKDRLTD---MVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDV 231 (591)
Q Consensus 160 ~~~~~-----~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 231 (591)
...|+ ..++..++.++...+..+ +|.++++.+.+.... ...++..-++.+.+.++.+.+.+.+.+|...-
T Consensus 74 ~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~- 151 (278)
T PF08631_consen 74 KLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV- 151 (278)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-
Confidence 11222 235566667776666543 455566666444332 34445455666666777777777777777642
Q ss_pred CcCcccHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCCC
Q 048533 232 RADLFTYNTLIALYCK--KGMHYEALAVQDRMEREGISPD 269 (591)
Q Consensus 232 ~~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~p~ 269 (591)
......+...+..+.. ......+...++.+....+.|.
T Consensus 152 ~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 152 DHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred ccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 2133444444444321 1233445555555544433333
No 223
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.84 E-value=0.047 Score=45.02 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=50.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHH-----HCCCCCCHHHH
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMV-----QLGVVANIHLY 203 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~ 203 (591)
++..++..+...|++++|+.+++.+...++- +...|..+|.++...|+...|.++|+.+. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4555677788888899999998888888765 78888888899999998888888888774 35777776654
No 224
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.84 E-value=0.005 Score=43.53 Aligned_cols=58 Identities=9% Similarity=0.024 Sum_probs=46.6
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048533 138 IFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGV 196 (591)
Q Consensus 138 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 196 (591)
..|.+.+++++|++++++++..++. +...+.....++.+.|+++.|.+.++...+.++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4577888888888888888888765 777778888888888888888888888887654
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.82 E-value=0.0046 Score=44.43 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
...++..++.+|...|++++|++.|++..... .. .....+....++..++.+|...|++++|++.+++.
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~----------~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIE-EQ----------LGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HH----------TTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HH----------HCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45678899999999999999999999987631 00 00001112356778899999999999999999987
Q ss_pred hh
Q 048533 157 RV 158 (591)
Q Consensus 157 ~~ 158 (591)
.+
T Consensus 73 l~ 74 (78)
T PF13424_consen 73 LD 74 (78)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 226
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.76 E-value=0.36 Score=42.70 Aligned_cols=76 Identities=14% Similarity=0.044 Sum_probs=64.4
Q ss_pred CCCChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCch
Q 048533 36 SSLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTP 113 (591)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 113 (591)
..|.+......+..+.. |++++|.+.|+.+..++|..+.+..+...++.++.+.+++++|+..+++-....|.+.+
T Consensus 31 ~~p~~~LY~~g~~~L~~--gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n 106 (254)
T COG4105 31 NLPASELYNEGLTELQK--GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN 106 (254)
T ss_pred CCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Confidence 34556677777777764 99999999999999999998888888888999999999999999999999887765443
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.70 E-value=0.034 Score=53.31 Aligned_cols=66 Identities=8% Similarity=-0.091 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCcc---chHHHHHHHHHhcCChHHHHHH
Q 048533 76 HSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNS---HVLSWLVIFYANLKMTQDGLQV 152 (591)
Q Consensus 76 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~ 152 (591)
.+...+++++.+|.+.|++++|+..|++.++.++ .+. ..++.++.+|...|+.++|+..
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P------------------d~aeA~~A~yNLAcaya~LGr~dEAla~ 134 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNP------------------NPDEAQAAYYNKACCHAYREEGKKAADC 134 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------------------CchHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3788899999999999999999999999888653 222 3478889999999999999999
Q ss_pred HHHHhhC
Q 048533 153 FDQMRVH 159 (591)
Q Consensus 153 ~~~~~~~ 159 (591)
++++++.
T Consensus 135 LrrALel 141 (453)
T PLN03098 135 LRTALRD 141 (453)
T ss_pred HHHHHHh
Confidence 9999885
No 228
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.66 E-value=0.21 Score=48.34 Aligned_cols=58 Identities=10% Similarity=0.115 Sum_probs=37.4
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHc
Q 048533 44 HKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALR 107 (591)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 107 (591)
..++...+. ..++.+-++.-++|++..|+ -..+|..|+. -.+....+|..++++..+.
T Consensus 172 q~IMq~AWR-ERnp~aRIkaA~eALei~pd---CAdAYILLAE--EeA~Ti~Eae~l~rqAvkA 229 (539)
T PF04184_consen 172 QEIMQKAWR-ERNPQARIKAAKEALEINPD---CADAYILLAE--EEASTIVEAEELLRQAVKA 229 (539)
T ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHhhhh---hhHHHhhccc--ccccCHHHHHHHHHHHHHH
Confidence 345555554 36777778888888887765 4555554442 2345678888888887764
No 229
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.64 E-value=0.59 Score=43.72 Aligned_cols=145 Identities=12% Similarity=-0.011 Sum_probs=90.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048533 388 DTASAMKVKNRMLEAGLMLDQF-TYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLL 466 (591)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 466 (591)
|...|...-.+..+. .||.. .-..-..++.+.|+..++-.+++.+-+.. |.+.+.. +..+.+.|+ .++.-+
T Consensus 244 dp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~--lY~~ar~gd--ta~dRl 315 (531)
T COG3898 244 DPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIAL--LYVRARSGD--TALDRL 315 (531)
T ss_pred ChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHH--HHHHhcCCC--cHHHHH
Confidence 344555554444443 44422 23334567788888888888888888765 4443332 222344444 333333
Q ss_pred HHHHHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHC
Q 048533 467 DEFVSR-GLCV-DVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRA-GEPKACSDILDDMYRR 542 (591)
Q Consensus 467 ~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 542 (591)
+...+. .++| +..+-..+.++-...|++..|+.--+.... ..|....|..|.+.-... ||-.++.+.+.+.++.
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 333221 1222 556666777777888888888887777765 477788888888776655 8889999988888875
No 230
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.61 E-value=0.61 Score=44.40 Aligned_cols=77 Identities=16% Similarity=0.073 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCChHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 342 NSILRKLCKEGRIRDANRLLNEMNEKK---IAPDNVTCNTLINAYCK---IGDTASAMKVKNRMLEAGLMLDQFTYKALI 415 (591)
Q Consensus 342 ~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 415 (591)
..++-+|....+++...++.+.+.... +.-+...-....-++.+ .|+.++|+.++..+......+++.+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344445666666677777666665531 11122222233344445 566666666666644444455566665555
Q ss_pred HHH
Q 048533 416 HGF 418 (591)
Q Consensus 416 ~~~ 418 (591)
..|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 443
No 231
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.60 E-value=0.078 Score=40.95 Aligned_cols=93 Identities=12% Similarity=-0.047 Sum_probs=76.3
Q ss_pred cCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccc
Q 048533 52 NCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSH 131 (591)
Q Consensus 52 ~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (591)
...|+.+.|++.|..++...|. ...+|++-++++.-+|+.++|.+-+++..+........ ..+
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P~---raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trt--------------acq 116 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAPE---RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRT--------------ACQ 116 (175)
T ss_pred HhccchHHHHHHHHHHHHhccc---chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchH--------------HHH
Confidence 3459999999999999998887 89999999999999999999999999988754332211 124
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
.|..-...|...|+-+.|..=|+..-+.|.
T Consensus 117 a~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 117 AFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 556677789999999999999998888764
No 232
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.57 E-value=0.011 Score=42.35 Aligned_cols=63 Identities=17% Similarity=0.258 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CcC-HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 479 SVYRALIRRFCKKEKVDYAQRLFNLMQGN----GI-LGD-SVIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 479 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
.+++.+...|...|++++|+..|++..+. |- .|+ ..++..+..++...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666666667777777777777666532 11 122 34566677777777777777777776654
No 233
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=0.19 Score=43.62 Aligned_cols=21 Identities=5% Similarity=0.109 Sum_probs=13.3
Q ss_pred HHHHhcCChHHHHHHHHHHhh
Q 048533 138 IFYANLKMTQDGLQVFDQMRV 158 (591)
Q Consensus 138 ~~~~~~~~~~~A~~~~~~~~~ 158 (591)
..|..+|.++-|-..+++.-+
T Consensus 99 ~lY~E~GspdtAAmaleKAak 119 (308)
T KOG1585|consen 99 ELYVECGSPDTAAMALEKAAK 119 (308)
T ss_pred HHHHHhCCcchHHHHHHHHHH
Confidence 347777777777666666543
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.023 Score=53.11 Aligned_cols=131 Identities=18% Similarity=0.023 Sum_probs=96.4
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHhhhCCCC---C---------CCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC
Q 048533 44 HKVLLNLYNCCHIPSLSCAFFKWAESAVPNY---K---------HSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLS 111 (591)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~---~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 111 (591)
.+--++.+.+.|++..|...|+.+....+.- + .-..++++++..+.+.+.+..|+...++.+...
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--- 287 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD--- 287 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC---
Confidence 3444566677889999999998877643310 0 123457789999999999999999999998865
Q ss_pred chHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChh-HHHHHHHH
Q 048533 112 TPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTD-MVWKVYKK 190 (591)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~ 190 (591)
+.|...+..-..+|...|+++.|+..|+++.+..+. |-.+-+.++..-.+.+... ...++|..
T Consensus 288 ---------------~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 288 ---------------PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred ---------------CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777888999999999999999999998765 6556666665555444433 34667777
Q ss_pred HHH
Q 048533 191 MVQ 193 (591)
Q Consensus 191 ~~~ 193 (591)
|..
T Consensus 352 mF~ 354 (397)
T KOG0543|consen 352 MFA 354 (397)
T ss_pred Hhh
Confidence 654
No 235
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.51 E-value=0.0026 Score=36.74 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=29.2
Q ss_pred HHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHH
Q 048533 64 FKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQ 98 (591)
Q Consensus 64 f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~ 98 (591)
|+++++..|+ +..+|+.++.+|...|++++|+
T Consensus 2 y~kAie~~P~---n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN---NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC---CHHHHHHHHHHHHHCcCHHhhc
Confidence 6778888888 9999999999999999999986
No 236
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.49 E-value=0.7 Score=44.00 Aligned_cols=100 Identities=6% Similarity=0.029 Sum_probs=62.4
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHhhCC---CccCHHhHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHHH
Q 048533 129 NSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN---LMPHLHACTVLLNSLAK---DRLTDMVWKVYKKMVQLGVVANIHL 202 (591)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~ 202 (591)
+.++...++-.|....+++.-+++.+.+.... +.-+...-...+-++.+ .|+.++|++++..+......++..+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 44566667777888888888888888877651 11122333345556666 7788888888888665555667777
Q ss_pred HHHHHHHHHc---------cCChhhHHHHHHHHhh
Q 048533 203 YNVLIHACCK---------SSDVDKVEKLLCEMEF 228 (591)
Q Consensus 203 ~~~ll~~~~~---------~g~~~~a~~~~~~~~~ 228 (591)
+..+.+.|-. ...+++|...|.+.-.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 7776665532 1134556666655443
No 237
>PRK11906 transcriptional regulator; Provisional
Probab=96.28 E-value=0.26 Score=47.66 Aligned_cols=147 Identities=8% Similarity=-0.007 Sum_probs=84.7
Q ss_pred ChhHHHHHHHHHh---hhCCCCCCCHHHHHHHHHHHHcC---------CCchHHHHHHHHHHHcCCCCchHHHHHHHhhc
Q 048533 56 IPSLSCAFFKWAE---SAVPNYKHSLQSHWTMIHILTKN---------KHFKSAQNMLEKIALRDFLSTPSVLNALVKIH 123 (591)
Q Consensus 56 ~~~~A~~~f~~~~---~~~p~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (591)
....|+.+|..+. ..+|. ...+|..++..+... ....+|.++.+++.+.+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~---~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--------------- 334 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTL---KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--------------- 334 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcc---cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC---------------
Confidence 5568999999999 55555 555555444322211 12233444444444433
Q ss_pred CCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHH
Q 048533 124 DDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVAN-IHL 202 (591)
Q Consensus 124 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~ 202 (591)
+.++.+...++.+..-.++++.|..+|++....++. ...+|....-.+.-.|+.++|.+.+++..+..+.-- ...
T Consensus 335 ---~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~ 410 (458)
T PRK11906 335 ---TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV 410 (458)
T ss_pred ---CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence 455666666777667777788888888887777654 455566555666667778888877777666543211 122
Q ss_pred HHHHHHHHHccCChhhHHHHHHH
Q 048533 203 YNVLIHACCKSSDVDKVEKLLCE 225 (591)
Q Consensus 203 ~~~ll~~~~~~g~~~~a~~~~~~ 225 (591)
....++.|+.. .++.|.++|-+
T Consensus 411 ~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 411 IKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHcCC-chhhhHHHHhh
Confidence 22233344443 35555555543
No 238
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.27 E-value=1.1 Score=42.78 Aligned_cols=117 Identities=19% Similarity=0.223 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHH-HHHHH
Q 048533 444 CSYSWLVDGYCNKNNEEALLKLLDEFVSRG-LCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIY-TSLAY 521 (591)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~ 521 (591)
..|...+.+-.+..-++.|..+|-++.+.+ +.++..++++++..++ .|+...|-++|+.-..+ -||...| .-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 355666677677778899999999999988 6678889999998655 68899999999987664 3455444 55677
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHhhhcchhH
Q 048533 522 AYWRAGEPKACSDILDDMYRRRLMIT--LKIYRSFSASYAKDNEI 564 (591)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~ 564 (591)
-+..-++-+.|..+|+..+.+ +.-+ ...|..+|+-=..-|++
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~l 518 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSL 518 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcch
Confidence 788889999999999977765 2223 45777777665555554
No 239
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.22 E-value=0.091 Score=41.51 Aligned_cols=94 Identities=10% Similarity=0.129 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 048533 443 YCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYA 522 (591)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 522 (591)
..++..++.++++.|+.+....+++..= |+.++... ..+. .-......|+..+..+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 4456666677777777766666665432 11111000 0000 11123456777777777777
Q ss_pred HHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 048533 523 YWRAGEPKACSDILDDMYRR-RLMITLKIYRSFSA 556 (591)
Q Consensus 523 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~ 556 (591)
|+..|++..|.++++...+. +++.+...|..|++
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 77777777777777777664 56666666665554
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.9 Score=41.07 Aligned_cols=149 Identities=12% Similarity=0.062 Sum_probs=70.8
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 81 HWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 81 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
-..-+..+...|++.+|..+|..+.... +.+..+...++.+|...|+.+.|..++..+....
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~------------------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~ 198 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAA------------------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA 198 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhC------------------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc
Confidence 3344555666667777766666666543 2233445556666666777777766666654432
Q ss_pred CccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCC-CcCcccHH
Q 048533 161 LMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDV-RADLFTYN 239 (591)
Q Consensus 161 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~ 239 (591)
..........-+..+.+.........+-.+.-+. +. |...-..+...+...|+.+.|.+.+-.+.+++. ..|...-.
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad-Pd-d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk 276 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD-PD-DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARK 276 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHH
Confidence 2111111112233333333333333333333221 11 444444455555666666666555544443321 12333444
Q ss_pred HHHHHHHhcC
Q 048533 240 TLIALYCKKG 249 (591)
Q Consensus 240 ~li~~~~~~g 249 (591)
.++..+...|
T Consensus 277 ~lle~f~~~g 286 (304)
T COG3118 277 TLLELFEAFG 286 (304)
T ss_pred HHHHHHHhcC
Confidence 4444444444
No 241
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.15 E-value=0.019 Score=35.64 Aligned_cols=41 Identities=12% Similarity=0.038 Sum_probs=30.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHH
Q 048533 131 HVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLL 172 (591)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 172 (591)
.++..++..|.+.|++++|+++|+++++..+. |...+..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhh
Confidence 35667788888888888888888888887665 666655543
No 242
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.12 E-value=1.2 Score=41.44 Aligned_cols=172 Identities=10% Similarity=0.049 Sum_probs=104.1
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCCCH-----HHHHHHHHHHHcCC-CchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCC
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKHSL-----QSHWTMIHILTKNK-HFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDP 126 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~~~-----~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (591)
+.|+.+.|...|.++....+...++. ..++..+..+...+ ++++|..++++..+.- +.........
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l--------~~~~~~~~~~ 76 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDIL--------EKPGKMDKLS 76 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH--------HhhhhccccC
Confidence 45899999999999876442212222 34556777788888 9999999998865520 0000000000
Q ss_pred ----CCccchHHHHHHHHHhcCChH---HHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 048533 127 ----DGNSHVLSWLVIFYANLKMTQ---DGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVAN 199 (591)
Q Consensus 127 ----~~~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 199 (591)
.....++..++.+|...+..+ +|..+++.+....+. ....+..-+..+.+.++.+.+.+++..|...-.- .
T Consensus 77 ~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~ 154 (278)
T PF08631_consen 77 PDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-S 154 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-c
Confidence 112246777888998877755 566677677555333 3456666778888889999999999999976321 3
Q ss_pred HHHHHHHHHHH---HccCChhhHHHHHHHHhhCCCCcCc
Q 048533 200 IHLYNVLIHAC---CKSSDVDKVEKLLCEMEFKDVRADL 235 (591)
Q Consensus 200 ~~~~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~~~~ 235 (591)
...+...+..+ ... ....+...++.+...-+.|..
T Consensus 155 e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 155 ESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred cchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 33444444443 332 334555555555444334333
No 243
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.09 E-value=0.19 Score=48.49 Aligned_cols=67 Identities=10% Similarity=-0.126 Sum_probs=58.3
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCH---HhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 127 DGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHL---HACTVLLNSLAKDRLTDMVWKVYKKMVQL 194 (591)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 194 (591)
|.+...+..+..+|.+.|++++|+..|++.++.++. +. .+|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556678888999999999999999999999998655 33 46999999999999999999999999885
No 244
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.39 Score=43.28 Aligned_cols=121 Identities=11% Similarity=-0.005 Sum_probs=63.7
Q ss_pred HHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhH
Q 048533 140 YANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKV 219 (591)
Q Consensus 140 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 219 (591)
....|++.+|..+|......... +...-..++.+|...|+.+.|..++..+....-.........-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 45566666666666666665544 44555566666666666666666666655432221222222234444444444444
Q ss_pred HHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048533 220 EKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMER 263 (591)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 263 (591)
..+-.+.-.. +.|...-..+...+...|+.+.|.+.+-.+.+
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444332 22445555555666666666666655554443
No 245
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.05 E-value=1.4 Score=41.61 Aligned_cols=21 Identities=14% Similarity=0.004 Sum_probs=12.5
Q ss_pred HHHHHHHHHcCCCchHHHHHH
Q 048533 81 HWTMIHILTKNKHFKSAQNML 101 (591)
Q Consensus 81 ~~~l~~~~~~~g~~~~A~~~~ 101 (591)
|..++..-...|+.+=|..++
T Consensus 3 ~a~IA~~A~~~GR~~LA~~LL 23 (319)
T PF04840_consen 3 YAEIARKAYEEGRPKLATKLL 23 (319)
T ss_pred HHHHHHHHHHcChHHHHHHHH
Confidence 344555666666666666654
No 246
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.96 E-value=1.8 Score=42.21 Aligned_cols=428 Identities=8% Similarity=0.063 Sum_probs=206.9
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHH
Q 048533 58 SLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLV 137 (591)
Q Consensus 58 ~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 137 (591)
..-..+|+.+...+++ ++..|..-+....+.+.+.+.-.+|..|...+|. +++++..-+
T Consensus 88 ~rIv~lyr~at~rf~~---D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~------------------~~dLWI~aA 146 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNG---DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN------------------NPDLWIYAA 146 (568)
T ss_pred HHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC------------------CchhHHhhh
Confidence 3445667777665554 8888877777777777799999999999886643 334443333
Q ss_pred H-HHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---------HHHHHH
Q 048533 138 I-FYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIH---------LYNVLI 207 (591)
Q Consensus 138 ~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~ll 207 (591)
. -|-.+.+++.|..+|.+.++.++. +...|....+.-.. .+..+..+=...|...+.. .++...
T Consensus 147 ~wefe~n~ni~saRalflrgLR~npd-sp~Lw~eyfrmEL~-----~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~ 220 (568)
T KOG2396|consen 147 KWEFEINLNIESARALFLRGLRFNPD-SPKLWKEYFRMELM-----YAEKLRNRREELGLDSSDKDEEIERGELAWINYA 220 (568)
T ss_pred hhHHhhccchHHHHHHHHHHhhcCCC-ChHHHHHHHHHHHH-----HHHHHHHHHHHhccccchhHHHHHHHHHHHHhhc
Confidence 2 244556689999999999888765 44444333322110 0111111111111110000 000000
Q ss_pred ------H---------HHHccCChhhH-HHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 048533 208 ------H---------ACCKSSDVDKV-EKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIV 271 (591)
Q Consensus 208 ------~---------~~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 271 (591)
. ...+.....+. ..+.+.+... .+.++.+|..+.. ..++-..+....+
T Consensus 221 ~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~-~~~np~~~~~laq------------r~l~i~~~tdl~~--- 284 (568)
T KOG2396|consen 221 NSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSK-APDNPLLWDDLAQ------------RELEILSQTDLQH--- 284 (568)
T ss_pred cchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhcc-CCCCCccHHHHHH------------HHHHHHHHhhccc---
Confidence 0 00000000000 1112222221 2233444433322 2222111110111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcC------CHHHHHHHHHHHHHCC-CCC-CHHHHHH
Q 048533 272 TYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRAN------DLEEALRLREVMAAKG-VYP-GVVTYNS 343 (591)
Q Consensus 272 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g------~~~~a~~~~~~~~~~~-~~p-~~~~~~~ 343 (591)
....-....-.-+.+....+|+.....-|+...|+..|..|.... .+.....+++.....+ ..+ ....|..
T Consensus 285 -~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~ 363 (568)
T KOG2396|consen 285 -TDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSV 363 (568)
T ss_pred -hhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 001111111111223334667766665666677777766664432 2333334444444332 222 3345555
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcC-CHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048533 344 ILRKLCKEGRI-RDANRLLNEMNEKKIAPDNVTCNTLINAYCKIG-DTASA-MKVKNRMLEAGLMLDQFTYKALIHGFCK 420 (591)
Q Consensus 344 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 420 (591)
+..+++..... .-|..+..+... .+...|..-+....+.. |++-- ...+......-..+....|+...
T Consensus 364 ~~l~~~t~~~~r~~a~~l~~e~f~----~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~----- 434 (568)
T KOG2396|consen 364 LLLCLNTLNEAREVAVKLTTELFR----DSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS----- 434 (568)
T ss_pred HHHHHhccchHhHHHHHhhHHHhc----chHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----
Confidence 55555554432 233333333333 25555555554444221 22211 12222222221122233333333
Q ss_pred cCC-HHHH--HHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCH
Q 048533 421 AKE-MDIA--KELLFGMLDAGFSPSYCSY-SWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFC--KKEKV 494 (591)
Q Consensus 421 ~~~-~~~a--~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~ 494 (591)
.|+ .... ..++......+ .|+..++ +.++..+.+.|-..+|...+..+... ++|+...|..+++.-. .+-+.
T Consensus 435 ~~dsl~~~~~~~Ii~a~~s~~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l 512 (568)
T KOG2396|consen 435 EGDSLQEDTLDLIISALLSVI-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNL 512 (568)
T ss_pred hccchhHHHHHHHHHHHHHhc-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCc
Confidence 111 1111 11222222222 3454444 55677777888888888888888776 5567777777776532 22347
Q ss_pred HHHHHHHHHHHh-CCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 495 DYAQRLFNLMQG-NGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 495 ~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
..++++|+.|.. .| .|+..|...+.--...|+.+.+-.++.++++.
T Consensus 513 ~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 513 ANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred hHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHHHHh
Confidence 778888888775 44 57788887777777888888888887777664
No 247
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.91 E-value=0.19 Score=39.71 Aligned_cols=80 Identities=15% Similarity=0.194 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH---------------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 048533 409 FTYKALIHGFCKAKEMDIAKELLFGML---------------DAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSR- 472 (591)
Q Consensus 409 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 472 (591)
.++..++.++++.|+.+....+++..- .....|+..++.+++.+|+..|++..|+++++...+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344455555555555555544443322 1223455556666666666666666666666555543
Q ss_pred CCCCCHHHHHHHHHHH
Q 048533 473 GLCVDVSVYRALIRRF 488 (591)
Q Consensus 473 ~~~~~~~~~~~l~~~~ 488 (591)
+++.+..+|..|++-.
T Consensus 83 ~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4444555555555543
No 248
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=2.7 Score=43.69 Aligned_cols=179 Identities=13% Similarity=0.075 Sum_probs=116.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCccC--HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPH--LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHA 209 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 209 (591)
....-+....+...++-|+.+-..- +..++ ...+......+.+.|+++.|..-|-+.... +.| ..++.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 3445667778888888888765432 22222 233455556666799999998888766542 122 235666
Q ss_pred HHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHH
Q 048533 210 CCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGIS-PDIVTYNSLIHGFCREGRMRE 288 (591)
Q Consensus 210 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~ 288 (591)
|....+..+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.+..+... .|.. -| .-..+..+.+.+-.++
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDE 481 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHH
Confidence 67777777778889999988864 66677889999999999988877776554 2221 12 2345566666677777
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048533 289 ARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMA 330 (591)
Q Consensus 289 A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 330 (591)
|..+-..... +......+ +-..+++++|++.+..+.
T Consensus 482 a~~LA~k~~~---he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 482 AELLATKFKK---HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhcc---CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 7766655542 33333333 344688999999887653
No 249
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.79 E-value=0.13 Score=45.69 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcchhHHHHHHHHH
Q 048533 530 KACSDILDDMYRRRLMITLKIYRSFSASYAKDNEILDLFWSHV 572 (591)
Q Consensus 530 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~ 572 (591)
+=+++++++|...|+.||..+-..|+.+|++.|=..+.+|-++
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~ 182 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRML 182 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHH
Confidence 4477888888888888888888888888888876665555544
No 250
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.76 E-value=0.3 Score=48.19 Aligned_cols=167 Identities=13% Similarity=0.045 Sum_probs=104.0
Q ss_pred CChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHH
Q 048533 38 LTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLN 117 (591)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 117 (591)
++...+.--++-+. ++++.+....+.. +..|..| ..-...++..|.+.|..+.|+++.+.-..
T Consensus 261 ld~~~~~fk~av~~---~d~~~v~~~i~~~-~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~----------- 323 (443)
T PF04053_consen 261 LDLSELEFKTAVLR---GDFEEVLRMIAAS-NLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH----------- 323 (443)
T ss_dssp --HHHHHHHHHHHT---T-HHH-----HHH-HTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-----------
T ss_pred ECHHHHHHHHHHHc---CChhhhhhhhhhh-hhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-----------
Confidence 34444444434343 7888877776522 2234322 34466788899999999999888543222
Q ss_pred HHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 118 ALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV 197 (591)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (591)
-.....+.|+++.|.++..+. ++...|..|.....++|+++.|.+.|.+...
T Consensus 324 ------------------rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---- 375 (443)
T PF04053_consen 324 ------------------RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---- 375 (443)
T ss_dssp ------------------HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----
T ss_pred ------------------HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----
Confidence 234466788998888775433 3677899999999999999999998887642
Q ss_pred CCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHH
Q 048533 198 ANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDR 260 (591)
Q Consensus 198 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 260 (591)
+..|+-.|.-.|+.+...++.+....+| -++....++.-.|+.++..+++.+
T Consensus 376 -----~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 376 -----FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -----HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred -----ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4566777888888888888887777665 255666666677888887777654
No 251
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.68 E-value=2.6 Score=42.10 Aligned_cols=118 Identities=11% Similarity=0.057 Sum_probs=78.4
Q ss_pred CChHHHHHHHHHHhhCCCccCHH-hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCChhhHHH
Q 048533 144 KMTQDGLQVFDQMRVHNLMPHLH-ACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACC-KSSDVDKVEK 221 (591)
Q Consensus 144 ~~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~ 221 (591)
...+.+..++..++.. .|... -|......-.+.|..+.+.++|++.++ +++.+...|......+. ..|+.+...+
T Consensus 59 ~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~ 135 (577)
T KOG1258|consen 59 EDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRD 135 (577)
T ss_pred hHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHH
Confidence 3445666677777654 34433 345555555677888888888888876 35556777776665544 3467777777
Q ss_pred HHHHHhhC-CC-CcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 222 LLCEMEFK-DV-RADLFTYNTLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 222 ~~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
.|+..... |. -.+...|...|..-..++++.....+|+++++.
T Consensus 136 ~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 136 LFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 77776553 21 123456777777777788888888888888874
No 252
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.67 E-value=0.4 Score=44.26 Aligned_cols=231 Identities=8% Similarity=-0.008 Sum_probs=122.1
Q ss_pred CCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchH
Q 048533 54 CHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL 133 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (591)
..+.++|+......+.+..+......++..+..+..+.|+++++...--..+....... +....-..|
T Consensus 19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~------------ds~~~~ea~ 86 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELE------------DSDFLLEAY 86 (518)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
Confidence 46778888888777765544333456666788899999999888665432222100000 001111345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhC-CCcc---CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----CCHHHHH
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQMRVH-NLMP---HLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV-----ANIHLYN 204 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~ 204 (591)
..+..++.+.-++.+++.+-..-... |..| .-.....+..++...+.++++++.|+...+.... ....++.
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv 166 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCV 166 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhh
Confidence 55666666666666666655444332 1111 1123344556666677777888777776653211 1234566
Q ss_pred HHHHHHHccCChhhHHHHHHHHhh----CCCCcCcc-cH-----HHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-
Q 048533 205 VLIHACCKSSDVDKVEKLLCEMEF----KDVRADLF-TY-----NTLIALYCKKGMHYEALAVQDRMER----EGISPD- 269 (591)
Q Consensus 205 ~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~-~~-----~~li~~~~~~g~~~~a~~~~~~~~~----~~~~p~- 269 (591)
.|...|.+..++++|.-+..+... .++. |.. -| ..+..++...|....|.+..++..+ .|-.+.
T Consensus 167 ~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 167 SLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 777777777777776655444322 2211 111 11 1233345556666666665555433 222111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048533 270 IVTYNSLIHGFCREGRMREARRLFRDIK 297 (591)
Q Consensus 270 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 297 (591)
......+.+.|...|+.+.|..-|++..
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2233445555666666666666665543
No 253
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.66 E-value=1.1 Score=45.09 Aligned_cols=118 Identities=16% Similarity=0.143 Sum_probs=74.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHH
Q 048533 421 AKEMDIAKELLFGMLDAGFSPSYCSYSWL-VDGYCNKNNEEALLKLLDEFVSRG---LCVDVSVYRALIRRFCKKEKVDY 496 (591)
Q Consensus 421 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~ 496 (591)
..+.+.|.+++..+... -|+...|... .+.+...|++++|++.++.+.... .+.....+-.+...+.-.++|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45667777888877764 3565555443 345566788888888888665321 12234456666677777888888
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHH-HHHHcCCh-------hHHHHHHHHHHH
Q 048533 497 AQRLFNLMQGNGILGDSVIYTSLAY-AYWRAGEP-------KACSDILDDMYR 541 (591)
Q Consensus 497 a~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~-------~~A~~~~~~~~~ 541 (591)
|...|.++.+.+ ..+..+|..+.. ++...|+. ++|.++|.++..
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888888888742 223444444333 33456666 777777777654
No 254
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.60 E-value=1.1 Score=36.97 Aligned_cols=125 Identities=10% Similarity=-0.039 Sum_probs=77.7
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHH
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLS 134 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (591)
+.+++|+.-|....+.... ...+-+...++.++...|+-..|...|.++....+.|.. +..+.++
T Consensus 72 ~k~d~Alaaf~~lektg~g-~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~--~rd~ARl------------ 136 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYG-SYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQI--GRDLARL------------ 136 (221)
T ss_pred CCchHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcch--hhHHHHH------------
Confidence 7788888888887764333 222334456777888888888888888888775543321 1111110
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 135 WLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQL 194 (591)
Q Consensus 135 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 194 (591)
.-.-.+...|.+++.....+.+...+-+-....-..|.-+-.+.|++..|.+.|..+...
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 112235567777777777776655543334445556666666777777777777777654
No 255
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.59 E-value=0.34 Score=37.59 Aligned_cols=94 Identities=11% Similarity=0.031 Sum_probs=67.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCcC--HHHHHHHHHHHHHcC
Q 048533 451 DGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGN-GILGD--SVIYTSLAYAYWRAG 527 (591)
Q Consensus 451 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~--~~~~~~l~~~~~~~g 527 (591)
.+....|+.+.|++.|.+.+..-+. .+..||.-..++.-.|+.++|+.=+++..+. |-+-. ...|..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3456778888888888888776333 6778888888888888888888888877763 22211 134555566777888
Q ss_pred ChhHHHHHHHHHHHCCCC
Q 048533 528 EPKACSDILDDMYRRRLM 545 (591)
Q Consensus 528 ~~~~A~~~~~~~~~~~~~ 545 (591)
+.+.|..-|+...+.|.+
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 888888888888887754
No 256
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.51 E-value=1.6 Score=38.30 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=28.2
Q ss_pred CCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 048533 71 VPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIAL 106 (591)
Q Consensus 71 ~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 106 (591)
-|++..-...|...+.+|...++|++|..-+.++.+
T Consensus 24 kad~dgaas~yekAAvafRnAk~feKakdcLlkA~~ 59 (308)
T KOG1585|consen 24 KADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASK 59 (308)
T ss_pred CCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 455555567788888889999999999888887764
No 257
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.47 E-value=0.92 Score=35.42 Aligned_cols=68 Identities=16% Similarity=0.251 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 048533 477 DVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLM 545 (591)
Q Consensus 477 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 545 (591)
+.......+......|.-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.++-++|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4455667777888889988888888888763 4678888889999999999999999999999998865
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.46 E-value=0.37 Score=44.02 Aligned_cols=153 Identities=10% Similarity=-0.029 Sum_probs=97.3
Q ss_pred HhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCC--HHHHHHHHHHHHccCChh
Q 048533 141 ANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQL-GVVAN--IHLYNVLIHACCKSSDVD 217 (591)
Q Consensus 141 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~--~~~~~~ll~~~~~~g~~~ 217 (591)
-..|+..+|...++++++.-++ |..++...=.++.-.|+.+.-...++++.-. +.... ..+...+.-++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3467888888888888887555 7777777778888888888888888877643 22222 222233334456778888
Q ss_pred hHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048533 218 KVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISP---DIVTYNSLIHGFCREGRMREARRLFR 294 (591)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~ 294 (591)
+|.+.-++..+.+ +.|..+-.++...+-..|++.++.+...+-...--.. -...|=...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 8888888877765 4566666777777778888888887765533210000 01111122233445577777777776
Q ss_pred H
Q 048533 295 D 295 (591)
Q Consensus 295 ~ 295 (591)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 5
No 259
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.46 E-value=1.3 Score=44.54 Aligned_cols=40 Identities=10% Similarity=0.120 Sum_probs=28.5
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 048533 61 CAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIAL 106 (591)
Q Consensus 61 ~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 106 (591)
...|.-++...|. ....++...+-.|+-+.+++++....+
T Consensus 177 ~G~f~L~lSlLPp------~~~kll~~vGF~gdR~~GL~~L~~~~~ 216 (468)
T PF10300_consen 177 FGLFNLVLSLLPP------KVLKLLSFVGFSGDRELGLRLLWEASK 216 (468)
T ss_pred HHHHHHHHHhCCH------HHHHHHhhcCcCCcHHHHHHHHHHHhc
Confidence 4455555555664 345677888888999999998888765
No 260
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.44 E-value=2.1 Score=39.77 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=20.9
Q ss_pred HhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048533 246 CKKGMHYEALAVQDRMERE--GISPDIVTYNSLIHGFCREGRMREARR 291 (591)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~ 291 (591)
....+.++|+..+.+.... +..--..++..+..+.++.|.+++++.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 3445556666555544332 001112334445555555555555443
No 261
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.13 E-value=0.68 Score=45.77 Aligned_cols=131 Identities=20% Similarity=0.164 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048533 339 VTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGF 418 (591)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 418 (591)
...+.++..+.+.|..+.|+++..+-. .-.....+.|+++.|.++.++ ..+...|..|....
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHH
Confidence 335555555666666666665543221 112333455666665544321 22455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048533 419 CKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQ 498 (591)
Q Consensus 419 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 498 (591)
.+.|+++-|++.+.+..+ +..|+-.|.-.|+.+.-.++.+.+...|- ++....++.-.|++++..
T Consensus 358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECV 422 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHH
Confidence 666666666666655432 33444445555665555555555554431 233334444445555555
Q ss_pred HHHH
Q 048533 499 RLFN 502 (591)
Q Consensus 499 ~~~~ 502 (591)
+++.
T Consensus 423 ~lL~ 426 (443)
T PF04053_consen 423 DLLI 426 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 262
>PRK11906 transcriptional regulator; Provisional
Probab=95.08 E-value=0.64 Score=45.05 Aligned_cols=114 Identities=7% Similarity=-0.003 Sum_probs=84.6
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHH
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLS 134 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (591)
.+..+|+.+-+.+.+..|. +..+.+.++.++...|+++.|..+|++....+ |....++.
T Consensus 318 ~~~~~a~~~A~rAveld~~---Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~------------------Pn~A~~~~ 376 (458)
T PRK11906 318 LAAQKALELLDYVSDITTV---DGKILAIMGLITGLSGQAKVSHILFEQAKIHS------------------TDIASLYY 376 (458)
T ss_pred HHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC------------------CccHHHHH
Confidence 4456788888888888887 89999999999999999999999999999876 34456677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhH-HHHHHHHHhcCChhHHHHHHHH
Q 048533 135 WLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHAC-TVLLNSLAKDRLTDMVWKVYKK 190 (591)
Q Consensus 135 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~ 190 (591)
.......-.|+.++|++.+++..+.++.--.... ...+..|+.. ..+.|+.+|-+
T Consensus 377 ~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 377 YRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 7777788899999999999998887654222222 2223344443 45666666644
No 263
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.07 E-value=4.2 Score=40.73 Aligned_cols=393 Identities=11% Similarity=0.015 Sum_probs=200.9
Q ss_pred ChhHHHHHHHHHhhhCCCCCCCHHHHH-HHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHH
Q 048533 56 IPSLSCAFFKWAESAVPNYKHSLQSHW-TMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLS 134 (591)
Q Consensus 56 ~~~~A~~~f~~~~~~~p~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (591)
+.+.+...+..++...|- ..-|| ..+..-.+.|..+.+..+|++....-+ .....+.
T Consensus 60 ~~~~~r~~y~~fL~kyPl----~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip------------------~SvdlW~ 117 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPL----CYGYWKKFADYEYKLGNAENSVKVFERGVQAIP------------------LSVDLWL 117 (577)
T ss_pred HHHHHHHHHHHHHhhCcc----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh------------------hHHHHHH
Confidence 345566666666655663 44455 577778888999999999998876322 1122222
Q ss_pred HHH-HHHHhcCChHHHHHHHHHHhhC---CCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048533 135 WLV-IFYANLKMTQDGLQVFDQMRVH---NLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHAC 210 (591)
Q Consensus 135 ~l~-~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 210 (591)
... .+....|+.+.....|+++... +.. +...|...+..-..++++....++|+++++. ....++.....|
T Consensus 118 ~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~-S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f 192 (577)
T KOG1258|consen 118 SYLAFLKNNNGDPETLRDLFERAKSYVGLDFL-SDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRF 192 (577)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhcccchh-ccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHH
Confidence 222 2233567777888888887764 222 4557788888888888999999999999874 233333333333
Q ss_pred Hc---c------CChhhHHHHHHHHhhC-CCC---cCcccHHHHHHHHH-hcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 048533 211 CK---S------SDVDKVEKLLCEMEFK-DVR---ADLFTYNTLIALYC-KKGMHYEALAVQDRMEREGISPDIVTYNSL 276 (591)
Q Consensus 211 ~~---~------g~~~~a~~~~~~~~~~-~~~---~~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 276 (591)
.+ . ...+++.++-.....+ ..+ +....+..-+.--. ..+..+++.....+.. ...
T Consensus 193 ~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~ 261 (577)
T KOG1258|consen 193 KQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIH 261 (577)
T ss_pred HHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHH
Confidence 21 1 1222222222222110 000 00000000000000 0001111111111100 001
Q ss_pred HHHHHhcCCHHHHHHHHHHhhc-----C----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 277 IHGFCREGRMREARRLFRDIKG-----A----TPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRK 347 (591)
Q Consensus 277 ~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 347 (591)
-..+-......+....|+.-.. . .++...|...+..-.+.|+.+.+.-+|+...-.- ..=...|-..+.-
T Consensus 262 ~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~ 340 (577)
T KOG1258|consen 262 EKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARW 340 (577)
T ss_pred HHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHH
Confidence 1112222233333344443322 1 2245667777888888888888888888776421 1112233334444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHH
Q 048533 348 LCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQ-FTYKALIHGFCKAKEMDI 426 (591)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ 426 (591)
....|+.+-|..++....+--.+..+.+--.-....-..|+++.|..+++.+...- |+. ..-..-+....+.|+.+.
T Consensus 341 m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~ 418 (577)
T KOG1258|consen 341 MESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLED 418 (577)
T ss_pred HHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhh
Confidence 44558877777777666554333222222222222334678888888888887763 332 222233344556777777
Q ss_pred HH---HHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048533 427 AK---ELLFGMLDAGFSPSYCSYSWLVDG-----YCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKE 492 (591)
Q Consensus 427 a~---~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 492 (591)
+. +++...... .-+..+...+.-- +.-.++.+.|..++.++.+. .+++...|..++......+
T Consensus 419 ~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 419 ANYKNELYSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 76 333333321 1122222222221 22356788888888888775 4446777777777665544
No 264
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.06 E-value=1.5 Score=35.61 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=17.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048533 415 IHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCN 455 (591)
Q Consensus 415 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (591)
+..+...+.......+++.+...+ ..+....+.++..|++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 333333444444444444444433 2333444444444443
No 265
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.05 E-value=2 Score=36.90 Aligned_cols=186 Identities=14% Similarity=0.002 Sum_probs=105.5
Q ss_pred HhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCC
Q 048533 48 LNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPD 127 (591)
Q Consensus 48 ~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (591)
+.+|..-|-...|.--|..++...|. -+++++.++.-+...|+++.|.+.|+...+.++...-+..+..+.
T Consensus 72 GvlYDSlGL~~LAR~DftQaLai~P~---m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~------ 142 (297)
T COG4785 72 GVLYDSLGLRALARNDFSQALAIRPD---MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA------ 142 (297)
T ss_pred cchhhhhhHHHHHhhhhhhhhhcCCC---cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee------
Confidence 34455556666677777777777776 788899999999999999999999999998876554443333332
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc-cCHHhHHHHHHHHHhcCChhHHH-HHHHHHHHCCCCCCHHHHHH
Q 048533 128 GNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLM-PHLHACTVLLNSLAKDRLTDMVW-KVYKKMVQLGVVANIHLYNV 205 (591)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ 205 (591)
+.--|+++-|.+=+.+.-+.++. |-...|..+.. ..-++..|. .+.++..+ .|...|..
T Consensus 143 ------------~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~ 203 (297)
T COG4785 143 ------------LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGW 203 (297)
T ss_pred ------------eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhH
Confidence 23357888888777776666543 21222322222 223444444 33444433 24444433
Q ss_pred HHH-HHHccCChhhHHHHHHHHhhCCC------CcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 206 LIH-ACCKSSDVDKVEKLLCEMEFKDV------RADLFTYNTLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 206 ll~-~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
.|- .|.-.=.. ..+++++....- ..=..||.-+..-+...|+.++|..+|+-....
T Consensus 204 ~iV~~yLgkiS~---e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 204 NIVEFYLGKISE---ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHhhccH---HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 332 22211111 122333322100 001235666667777777777777777766654
No 266
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.00 E-value=0.051 Score=33.63 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=21.8
Q ss_pred HHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHH
Q 048533 46 VLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMI 85 (591)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~ 85 (591)
.++..+...|++++|.+.|+.+++..|+ +..++..++
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~~~P~---~~~a~~~La 42 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALALDPD---DPEAWRALA 42 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcC---CHHHHHHhh
Confidence 3445555556666666666666666665 555555444
No 267
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.92 E-value=0.3 Score=44.28 Aligned_cols=78 Identities=10% Similarity=0.105 Sum_probs=59.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHHHHH
Q 048533 131 HVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQ-----LGVVANIHLYNV 205 (591)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 205 (591)
.++..++..+...|+.+.+.+.++++...++. +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 45666777888888888888888888887766 778888888888888888888888887765 567776666655
Q ss_pred HHHH
Q 048533 206 LIHA 209 (591)
Q Consensus 206 ll~~ 209 (591)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5544
No 268
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.83 E-value=0.28 Score=43.58 Aligned_cols=100 Identities=16% Similarity=0.227 Sum_probs=70.1
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------------
Q 048533 290 RRLFRDIKGATPNHVTYTTLIDGYCR-----ANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEG------------ 352 (591)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~------------ 352 (591)
.+.|..+...+.|..+|-..+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+-.
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34444444445566677776666543 4567777777888888888889999988888764422
Q ss_pred ----CHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCH
Q 048533 353 ----RIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDT 389 (591)
Q Consensus 353 ----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 389 (591)
+-+-+++++++|...|+.||..+-..|++++.+.+-.
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2344777888888888888888888888888776643
No 269
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.74 E-value=2.9 Score=37.26 Aligned_cols=124 Identities=15% Similarity=0.020 Sum_probs=64.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048533 417 GFCKAKEMDIAKELLFGMLDAGF--SPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKV 494 (591)
Q Consensus 417 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 494 (591)
.+...|+++.|...+.+...... ......+......+...++.+.+...+....+.........+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 44455555555555555533110 0112222222333445566666666666666542211345556666666666666
Q ss_pred HHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 495 DYAQRLFNLMQGNGILGD-SVIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 495 ~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
+.+...+...... .|+ ...+..+...+...|..+++...+.+....
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777766666654 222 334444444444555666777666666664
No 270
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.72 E-value=1.9 Score=35.04 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=16.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHH
Q 048533 136 LVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLA 176 (591)
Q Consensus 136 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 176 (591)
++..+...+.+.....+++.+...+. .+...++.++..|+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~ 52 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYA 52 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHH
Confidence 34444444444444444444444432 23334444444444
No 271
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.55 E-value=2.5 Score=42.43 Aligned_cols=61 Identities=15% Similarity=-0.060 Sum_probs=40.4
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCh
Q 048533 234 DLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNH 303 (591)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 303 (591)
+..+...+...+.+...+.-|-++|.+|-.. ..+++.+...++|.+|..+-+..++..||+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccc
Confidence 3445555555566666777777777766431 235667777888888888888877766654
No 272
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.47 E-value=7.5 Score=40.83 Aligned_cols=264 Identities=11% Similarity=0.047 Sum_probs=141.8
Q ss_pred CCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHH
Q 048533 71 VPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGL 150 (591)
Q Consensus 71 ~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 150 (591)
+|+.|........-...+.+.+++++..+.+ ..++.+...-...+.+....|+.++|.
T Consensus 92 ~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~----------------------~~~p~~~~~~c~~~~A~~~~G~~~~A~ 149 (644)
T PRK11619 92 NPTLPPARSLQSRFVNELARREDWRGLLAFS----------------------PEKPKPVEARCNYYYAKWATGQQQEAW 149 (644)
T ss_pred CCCCchHHHHHHHHHHHHHHccCHHHHHHhc----------------------CCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 5654444444444445555555555544421 123445555666777888889888887
Q ss_pred HHHHHHhhCCCccCHHhHHHHHHHHHhcCChhH--HHHHHHHHHHCCCCCCHHHHHHHHHHHHc------------cCCh
Q 048533 151 QVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDM--VWKVYKKMVQLGVVANIHLYNVLIHACCK------------SSDV 216 (591)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~ll~~~~~------------~g~~ 216 (591)
.....+-..|.. ....+..++..+.+.|.... ..+=+..+...| +...-..+...+.. ..+.
T Consensus 150 ~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p 225 (644)
T PRK11619 150 QGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDP 225 (644)
T ss_pred HHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCH
Confidence 777776555543 55678888888887665443 222233333322 22222222221100 0111
Q ss_pred hhHHHHHHHHhhCCCCcCcccHHHHHHHHH--hcCChhHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHHhcCCHHHHHH
Q 048533 217 DKVEKLLCEMEFKDVRADLFTYNTLIALYC--KKGMHYEALAVQDRMEREG-ISPDI--VTYNSLIHGFCREGRMREARR 291 (591)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~-~~p~~--~~~~~l~~~~~~~g~~~~A~~ 291 (591)
..+..++.. ++++...-..++.++. ...+.+.|..++..+.... ..+.. ..+..+.......+...+|..
T Consensus 226 ~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~ 300 (644)
T PRK11619 226 NTVETFART-----TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAK 300 (644)
T ss_pred HHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHH
Confidence 111111111 1122211121222222 3456688888888874432 22222 233344433344333567777
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 292 LFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNE 366 (591)
Q Consensus 292 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 366 (591)
.+........+......-+......++++.+...+..|.... .-...-..-+.+++...|+.++|...|+.+..
T Consensus 301 w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 301 WRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 777765433455555555666668899999888888875532 22444556667777778999999999988743
No 273
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.43 E-value=2.7 Score=35.57 Aligned_cols=96 Identities=13% Similarity=0.132 Sum_probs=58.1
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 048533 83 TMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLM 162 (591)
Q Consensus 83 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 162 (591)
.++..+...|++++|..-++..... +.+..+.+++. ..|.+.....|.+++|+..++.....+..
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~------------lRLArvq~q~~k~D~AL~~L~t~~~~~w~ 158 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAA------------LRLARVQLQQKKADAALKTLDTIKEESWA 158 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHH------------HHHHHHHHHhhhHHHHHHHHhccccccHH
Confidence 4567777777887777777766542 12233333332 23566677777777777777766554332
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048533 163 PHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLG 195 (591)
Q Consensus 163 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 195 (591)
+ .....-..++...|+-++|+.-|+...+.+
T Consensus 159 ~--~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 159 A--IVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred H--HHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 1 122334466677777777777777777664
No 274
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.26 E-value=0.51 Score=39.74 Aligned_cols=97 Identities=13% Similarity=0.018 Sum_probs=52.4
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccC
Q 048533 85 IHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPH 164 (591)
Q Consensus 85 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 164 (591)
+.-+++.|.|.+|..-|..++..-+...... ..-+|..-+.++.+.+.++.|+.-..+.++.++. .
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~-------------rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y 167 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEE-------------RSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-Y 167 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHH-------------HHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-h
Confidence 4445566666666666666665433222110 1123444455566666666666666666665543 3
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048533 165 LHACTVLLNSLAKDRLTDMVWKVYKKMVQLG 195 (591)
Q Consensus 165 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 195 (591)
..+...-..+|.+...++.|++-|..+.+..
T Consensus 168 ~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 168 EKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 3334444455666666666666666666654
No 275
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.25 E-value=5.9 Score=38.88 Aligned_cols=54 Identities=11% Similarity=0.039 Sum_probs=23.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048533 416 HGFCKAKEMDIAKELLFGMLDAGFS-PSYCSYSWLVDGYCNKNNEEALLKLLDEF 469 (591)
Q Consensus 416 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 469 (591)
.++.+.|+.++|.+.+.++.+.... .+..+...|+.++...+.+.++..++.+.
T Consensus 267 mCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 267 MCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3334445555555555554432211 11223344444444444444444444444
No 276
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.86 E-value=3.2 Score=34.30 Aligned_cols=126 Identities=14% Similarity=0.120 Sum_probs=69.9
Q ss_pred HHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHH
Q 048533 87 ILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLH 166 (591)
Q Consensus 87 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 166 (591)
-+.+.|..++|+.-|..+.+.|..+.+.+ ..........+.|+...|+..|+++-.....|...
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvL----------------A~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~ 130 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVL----------------ARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIG 130 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHH----------------HHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchh
Confidence 45677788888888888777664433221 11123345667777777777777776665444432
Q ss_pred -hHH--HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhh
Q 048533 167 -ACT--VLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEF 228 (591)
Q Consensus 167 -~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 228 (591)
... .-.-.+...|.++......+-+-..+-+.....-..|.-+-.+.|++..|.+.|+.+..
T Consensus 131 rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 131 RDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 111 11123345566666555555554433333333444555555566666666666666554
No 277
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.67 E-value=1.1 Score=40.83 Aligned_cols=77 Identities=12% Similarity=0.070 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 048533 480 VYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYR-----RRLMITLKIYRSF 554 (591)
Q Consensus 480 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l 554 (591)
++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|.+.+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34445555555555555555555555542 22445555555555555555555555555544 2555555555444
Q ss_pred HHh
Q 048533 555 SAS 557 (591)
Q Consensus 555 i~~ 557 (591)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 278
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.67 E-value=2.8 Score=32.91 Aligned_cols=138 Identities=17% Similarity=0.201 Sum_probs=69.2
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048533 247 KKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLR 326 (591)
Q Consensus 247 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 326 (591)
-.|..++..++..+.... .+..-+|.++--....-+-+-..+.++.+-. --|.. .+|+.......+
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk-iFDis----------~C~NlKrVi~C~ 79 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK-IFDIS----------KCGNLKRVIECY 79 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG-GS-GG----------G-S-THHHHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh-hcCch----------hhcchHHHHHHH
Confidence 456677777777776653 2455566666555555555666666665543 11111 123333333333
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 048533 327 EVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGL 404 (591)
Q Consensus 327 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 404 (591)
-.+- .+.......+..+...|+-++-.+++.++.+. -.+++.....+..+|.+.|+..++-+++.++-+.|+
T Consensus 80 ~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 80 AKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 2221 12334445556666667777777777766542 345666666677777777777777777777766654
No 279
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.61 E-value=11 Score=39.66 Aligned_cols=216 Identities=14% Similarity=0.144 Sum_probs=122.7
Q ss_pred hHHHHHHHHHhhhCCCC--CCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHH
Q 048533 58 SLSCAFFKWAESAVPNY--KHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSW 135 (591)
Q Consensus 58 ~~A~~~f~~~~~~~p~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (591)
..|.++++.|...-+.. +....-|+.++. .|++.++.+.+... ..+ .....+...
T Consensus 8 ~lAeey~~~A~~~~~~~~~~~~l~~Y~kLI~---------~ai~CL~~~~~~~~-l~p-------------~~ea~~~l~ 64 (608)
T PF10345_consen 8 SLAEEYLEKAHSLATKVKSEEQLKQYYKLIA---------TAIKCLEAVLKQFK-LSP-------------RQEARVRLR 64 (608)
T ss_pred HHHHHHHHHhHHHHHhcCChhhHHHHHHHHH---------HHHHHHHHHhccCC-CCH-------------HHHHHHHHH
Confidence 34555555554322211 235666777765 46777777765221 111 112244556
Q ss_pred HHHHHH-hcCChHHHHHHHHHHhhCCCccCHH-----hHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCCHHHHHH
Q 048533 136 LVIFYA-NLKMTQDGLQVFDQMRVHNLMPHLH-----ACTVLLNSLAKDRLTDMVWKVYKKMVQLG----VVANIHLYNV 205 (591)
Q Consensus 136 l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~ 205 (591)
++..+. ...+++.|...+++.....-.++.. ....++..+.+.+... |....++..+.- ..+-...|..
T Consensus 65 la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frl 143 (608)
T PF10345_consen 65 LASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRL 143 (608)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHH
Confidence 677665 6889999999999886554333322 2235556666666555 888888876532 1122233333
Q ss_pred H-HHHHHccCChhhHHHHHHHHhhCC---CCcCcccHHHHHHHHH--hcCChhHHHHHHHHHHHCCC---------CCCH
Q 048533 206 L-IHACCKSSDVDKVEKLLCEMEFKD---VRADLFTYNTLIALYC--KKGMHYEALAVQDRMEREGI---------SPDI 270 (591)
Q Consensus 206 l-l~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~~---------~p~~ 270 (591)
+ +..+...+++..|.+.++.+...- ..|-..++-.++.+.. ..+..+++.+.++.+..... .|-.
T Consensus 144 l~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL 223 (608)
T PF10345_consen 144 LKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQL 223 (608)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHH
Confidence 3 333334489999999998876542 1233444444444443 45666777777777643211 2345
Q ss_pred HHHHHHHHHH--HhcCCHHHHHHHHHHhh
Q 048533 271 VTYNSLIHGF--CREGRMREARRLFRDIK 297 (591)
Q Consensus 271 ~~~~~l~~~~--~~~g~~~~A~~~~~~~~ 297 (591)
.+|..+++.+ ...|+++.+...++++.
T Consensus 224 ~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 224 KALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5666666554 46688778877776664
No 280
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.56 E-value=2.4 Score=39.03 Aligned_cols=152 Identities=14% Similarity=0.058 Sum_probs=87.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----HHHHHHHHHHHHcCCHH
Q 048533 315 RANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDN----VTCNTLINAYCKIGDTA 390 (591)
Q Consensus 315 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~ 390 (591)
..|++.+|-..++++.+. .+-|...+...-.++.-.|+...-...++++... ..+|. ..-..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 366666766667776654 3445566666666777777777777777776654 12222 22233344455677777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 048533 391 SAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPS----YCSYSWLVDGYCNKNNEEALLKLL 466 (591)
Q Consensus 391 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~ 466 (591)
+|.+.-++..+.+ +.|.-.-.++...+.-.|+..++.+...+-... .+.+ ...|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 7777777766654 335555566666666677777777766554321 1100 112222333445557777777777
Q ss_pred HHHH
Q 048533 467 DEFV 470 (591)
Q Consensus 467 ~~~~ 470 (591)
+.-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 6544
No 281
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.52 E-value=6.4 Score=36.69 Aligned_cols=125 Identities=15% Similarity=0.260 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHhhcCC-----CChhhHHHHHHHHHhcCC---
Q 048533 253 EALAVQDRMEREGISPDIVTYNSLIHGFCR--E----GRMREARRLFRDIKGAT-----PNHVTYTTLIDGYCRAND--- 318 (591)
Q Consensus 253 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~--- 318 (591)
+.+.+++.|.+.|+.-+..+|.+....... . .....|..+|+.|++.. ++..++..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 445677777888777666555442222222 1 13456777777777632 334444444333 2233
Q ss_pred -HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCChHHHHHH
Q 048533 319 -LEEALRLREVMAAKGVYPGVV--TYNSILRKLCKEGR--IRDANRLLNEMNEKKIAPDNVTCNTL 379 (591)
Q Consensus 319 -~~~a~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 379 (591)
.+.+..+|+.+.+.|+..+.. ....++........ ...+..+++.+.+.|+++....|..+
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 345556666777666554322 22222222211111 34566666667776666655554443
No 282
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.40 E-value=4.7 Score=34.76 Aligned_cols=179 Identities=17% Similarity=0.061 Sum_probs=88.2
Q ss_pred cCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHH
Q 048533 143 LKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKL 222 (591)
Q Consensus 143 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 222 (591)
.|-..-|.-=|.+.+...++ -..+||.+.-.+...|+++.|.+.|+...+.++.-+-...|.-|. +--.|++.-|.+-
T Consensus 78 lGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d 155 (297)
T COG4785 78 LGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDD 155 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHH
Confidence 34444444445555554433 456777777777788888888888888877765533333333332 3345777777776
Q ss_pred HHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHH-HHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHhhcCC
Q 048533 223 LCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQ-DRMEREGISPDIVTYNSLI-HGFCREGRMREARRLFRDIKGAT 300 (591)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~-~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~ 300 (591)
+...-..+ |+...-...+..--..-++.+|..-+ ++.... |..-|...+ ..|...=..+ .+++++....
T Consensus 156 ~~~fYQ~D--~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a 226 (297)
T COG4785 156 LLAFYQDD--PNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEE---TLMERLKADA 226 (297)
T ss_pred HHHHHhcC--CCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHH---HHHHHHHhhc
Confidence 66655443 22111111222222333555554433 333322 333333222 2222111112 2222222211
Q ss_pred C--------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 301 P--------NHVTYTTLIDGYCRANDLEEALRLREVMAAK 332 (591)
Q Consensus 301 ~--------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 332 (591)
. =+.+|--+...+...|+.++|..+|+.....
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 1 1234555666666677777777777666654
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.28 E-value=0.16 Score=29.71 Aligned_cols=27 Identities=11% Similarity=0.123 Sum_probs=22.7
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHH
Q 048533 80 SHWTMIHILTKNKHFKSAQNMLEKIAL 106 (591)
Q Consensus 80 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 106 (591)
++..|+.++.+.|++++|+++|++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467899999999999999999999553
No 284
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.16 E-value=9 Score=37.29 Aligned_cols=162 Identities=13% Similarity=0.018 Sum_probs=108.6
Q ss_pred HHHHHHHHHhccccch---hcCCCCCC-CCChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 048533 13 FIKTISAIMLKGHWAK---LLNPNIAS-SLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHIL 88 (591)
Q Consensus 13 ~~~~i~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~ 88 (591)
|...||.-.-++-... .+..+-+. .+........+-+.+. .|+...|-.-...+++.+|+ .+........++
T Consensus 258 Fa~~iv~~~fkg~in~~~~~~d~~~q~~~~~~~~~~~si~k~~~-~gd~~aas~~~~~~lr~~~~---~p~~i~l~~~i~ 333 (831)
T PRK15180 258 FGDAIVAAIFKGVINNTNHHLDEGRQEKQDQIREITLSITKQLA-DGDIIAASQQLFAALRNQQQ---DPVLIQLRSVIF 333 (831)
T ss_pred HHHHHHHHHHhcccCCcccccccccCcCCcchhHHHHHHHHHhh-ccCHHHHHHHHHHHHHhCCC---CchhhHHHHHHH
Confidence 7778887776664332 22222122 2333444444444444 38888888777778887887 444445566778
Q ss_pred HcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhH
Q 048533 89 TKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHAC 168 (591)
Q Consensus 89 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 168 (591)
...|.|+.+.+.+......- .........+++...+.|++++|..+-+-|+...+. +.+..
T Consensus 334 ~~lg~ye~~~~~~s~~~~~~------------------~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~ 394 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKII------------------GTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVL 394 (831)
T ss_pred HHhhhHHHHHHHhhchhhhh------------------cCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-Chhhe
Confidence 88999999998886554311 122345666777788899999999999999988776 66666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 169 TVLLNSLAKDRLTDMVWKVYKKMVQLGVV 197 (591)
Q Consensus 169 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (591)
..........|-++++.-.++++...+.+
T Consensus 395 ~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 395 TVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred eeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 65556666678889999999888776543
No 285
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.12 E-value=1.1 Score=38.08 Aligned_cols=64 Identities=17% Similarity=0.140 Sum_probs=47.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCCcc--CHHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 131 HVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMP--HLHACTVLLNSLAKDRLTDMVWKVYKKMVQL 194 (591)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 194 (591)
..+..++..|.+.|+.++|++.|.++.+....+ -...+-.+++.....+++..+.....+....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345567788888899999999888888764433 3456677788888888888887777766543
No 286
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.11 E-value=5.6 Score=34.78 Aligned_cols=25 Identities=8% Similarity=0.182 Sum_probs=15.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 243 ALYCKKGMHYEALAVQDRMEREGIS 267 (591)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~~~~~ 267 (591)
..-...+++.+|+++|+++......
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344566777777777776655433
No 287
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.02 E-value=6.2 Score=35.03 Aligned_cols=222 Identities=18% Similarity=0.053 Sum_probs=126.9
Q ss_pred CCHHHHHHHHHHhhcCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048533 284 GRMREARRLFRDIKGATPN---HVTYTTLIDGYCRANDLEEALRLREVMAAK-GVYPGVVTYNSILRKLCKEGRIRDANR 359 (591)
Q Consensus 284 g~~~~A~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~ 359 (591)
+....+...+.......+. ...+......+...+++..+...+...... ........+......+...+....+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3344444444444332222 345555555666666666666666555531 122334445555555556666666777
Q ss_pred HHHHHHhCCCCCChHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048533 360 LLNEMNEKKIAPDNVTCNTLIN-AYCKIGDTASAMKVKNRMLEAGL--MLDQFTYKALIHGFCKAKEMDIAKELLFGMLD 436 (591)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 436 (591)
.+.........+ ......... .+...|+++.+...+........ ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666666543222 122222222 56677777777777777654221 11233344444445667788888888887776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 437 AGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGN 507 (591)
Q Consensus 437 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 507 (591)
.........+..+...+...++.+.+...+......... ....+..+...+...+..+.+...+.+....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 431113566777777777788888888888888775322 2344444444555666788888888887764
No 288
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.91 E-value=8 Score=38.62 Aligned_cols=165 Identities=9% Similarity=-0.009 Sum_probs=87.2
Q ss_pred ccchhcCCCCCCCCCh-HHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCC---------CCCCHHHHHHHHHHHHcCCCc
Q 048533 25 HWAKLLNPNIASSLTS-TAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPN---------YKHSLQSHWTMIHILTKNKHF 94 (591)
Q Consensus 25 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~---------~~~~~~~~~~l~~~~~~~g~~ 94 (591)
.|++...+++...+.. ... +.-.-+.+.+.+++|..-|.-+....+. .|.-+.+...++.++..+|+.
T Consensus 223 ~W~p~~r~gLSMkll~sq~~--isfF~~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~ 300 (665)
T KOG2422|consen 223 DWPPTQRSGLSMKLLESQKG--ISFFKFEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDR 300 (665)
T ss_pred cCCCcccCCcceeeecccCc--eeEEEeecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcch
Confidence 3776666655443221 110 0011233456778888888877654221 133567788899999999999
Q ss_pred hHHHHHHHHHHHcC---CCCchHHHHHHHhhcCCCCCccchHHHH---HHHHHhcCChHHHHHHHHHHhhCCCccCHHhH
Q 048533 95 KSAQNMLEKIALRD---FLSTPSVLNALVKIHDDPDGNSHVLSWL---VIFYANLKMTQDGLQVFDQMRVHNLMPHLHAC 168 (591)
Q Consensus 95 ~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 168 (591)
+-|..++++.+-.- ..+.=..+....++-...+.|...|..+ +....+.|-+..|.++..-+.+.++.-|....
T Consensus 301 e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~ 380 (665)
T KOG2422|consen 301 EMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGI 380 (665)
T ss_pred hhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhH
Confidence 99999888765410 0000000000011111223344444443 33455566666666666666666554455555
Q ss_pred HHHHHHHH-hcCChhHHHHHHHHH
Q 048533 169 TVLLNSLA-KDRLTDMVWKVYKKM 191 (591)
Q Consensus 169 ~~ll~~~~-~~~~~~~a~~~~~~~ 191 (591)
..+|..|+ +.++++-.+++++..
T Consensus 381 l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 381 LYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55555554 344455555555544
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.90 E-value=0.25 Score=28.83 Aligned_cols=27 Identities=11% Similarity=0.249 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 515 IYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
+|..|..+|.+.|++++|+.+|++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888888888888888553
No 290
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=92.74 E-value=14 Score=38.45 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHH
Q 048533 79 QSHWTMIHILTKNKHFKSAQNMLEKIA 105 (591)
Q Consensus 79 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 105 (591)
..||..+..+.-.|++++|.++++...
T Consensus 149 p~FW~~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 149 PDFWDYVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH-TTT
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHhcc
Confidence 678999999999999999999985443
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.55 E-value=5.1 Score=32.92 Aligned_cols=52 Identities=19% Similarity=0.109 Sum_probs=26.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 419 CKAKEMDIAKELLFGMLDAGFSPSYCSYSW-LVDGYCNKNNEEALLKLLDEFVSR 472 (591)
Q Consensus 419 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~ 472 (591)
.+.++.+++..++..+.-. .|....... -...+...|++.+|..+|+.+.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3455666666666655542 233322222 133345566666666666665543
No 292
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.55 E-value=5.1 Score=32.92 Aligned_cols=58 Identities=7% Similarity=0.028 Sum_probs=33.1
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048533 84 MIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVH 159 (591)
Q Consensus 84 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 159 (591)
++..-.+.+..+++..++.-+....| ..+.+-..-+..+.+.|++.+|+.+|+.+...
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvLRP------------------~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVLRP------------------EFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHhCC------------------CchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34444555666677666666655432 22233333444566677777777777776554
No 293
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.52 E-value=5.7 Score=35.94 Aligned_cols=61 Identities=15% Similarity=0.080 Sum_probs=47.7
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048533 202 LYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMER 263 (591)
Q Consensus 202 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 263 (591)
+++...+.|..+|.+.+|.++.+.....+ +.+...|..++..+...|+--.+.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34555677888899999999888888775 66778888888888888888888777777643
No 294
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.51 E-value=1 Score=32.88 Aligned_cols=62 Identities=15% Similarity=0.086 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 494 VDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSA 556 (591)
Q Consensus 494 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 556 (591)
.=++++-++.+...++.|++.+..+.+++|.+.+++..|.++++-...+.- .....|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~-~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG-AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-CchhhHHHHHH
Confidence 335566666666666777777777777777777777777777777665421 13335554443
No 295
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.49 E-value=11 Score=36.48 Aligned_cols=65 Identities=15% Similarity=0.040 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048533 372 DNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLML---DQFTYKALIHGFCKAKEMDIAKELLFGMLD 436 (591)
Q Consensus 372 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 436 (591)
...+|..++..+.+.|.++.|...+..+...+... .+.....-+......|+..+|...++..+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567777777777888888877777776643211 334444455566667777777777777765
No 296
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=92.42 E-value=11 Score=36.41 Aligned_cols=132 Identities=8% Similarity=0.079 Sum_probs=84.3
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHH--------HHhhcCCC
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNA--------LVKIHDDP 126 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 126 (591)
+||+.=..+++ ..|- -++++..+..++.++|+.+.|.+++++++-.--......|.. -.++-...
T Consensus 24 ~Dp~~l~~ll~----~~Py---HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~ 96 (360)
T PF04910_consen 24 HDPNALINLLQ----KNPY---HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRR 96 (360)
T ss_pred cCHHHHHHHHH----HCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCcc
Confidence 46665444443 2564 789999999999999999999999999865211111111110 11111223
Q ss_pred CCccchHHHH---HHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHH-hcCChhHHHHHHHHHHH
Q 048533 127 DGNSHVLSWL---VIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLA-KDRLTDMVWKVYKKMVQ 193 (591)
Q Consensus 127 ~~~~~~~~~l---~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~ 193 (591)
+.|..+|..+ +....+.|-+..|+++..-+...++.-|.......|..|+ +.++++-.+++++....
T Consensus 97 ~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 97 PENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred ccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4455666554 4567788888888888888888776656666666676665 55666666666666544
No 297
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.30 E-value=21 Score=39.30 Aligned_cols=133 Identities=14% Similarity=0.025 Sum_probs=78.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048533 380 INAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALI----HGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCN 455 (591)
Q Consensus 380 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (591)
++.--+.|-+++|+.++ .|+...+.... ..+...+.+++|.-.|+..=+ ....+.+|..
T Consensus 915 ~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~ 977 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKE 977 (1265)
T ss_pred HHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHH
Confidence 33334445555555443 45555544444 344456667777666654321 1233667777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHH
Q 048533 456 KNNEEALLKLLDEFVSRGLCVDVS--VYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACS 533 (591)
Q Consensus 456 ~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 533 (591)
.|++.+|+.+..++... -+.. +-..|+.-+...+++-+|-++..+..+. ..-.+..|++...|++|.
T Consensus 978 ~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAl 1046 (1265)
T KOG1920|consen 978 CGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEAL 1046 (1265)
T ss_pred hccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHH
Confidence 88888888887766532 1222 2256777778888888888888777653 233445566666777777
Q ss_pred HHHHHHH
Q 048533 534 DILDDMY 540 (591)
Q Consensus 534 ~~~~~~~ 540 (591)
++.....
T Consensus 1047 rva~~~~ 1053 (1265)
T KOG1920|consen 1047 RVASKAK 1053 (1265)
T ss_pred HHHHhcc
Confidence 7655544
No 298
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.24 E-value=16 Score=37.89 Aligned_cols=107 Identities=9% Similarity=0.085 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 048533 443 YCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYA 522 (591)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 522 (591)
..+.+--+.-+...|+..+|.++-.+.. -||-..|-.-+.+++..++|++-.++-+... .+.-|...+.+
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~ 753 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEA 753 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHH
Confidence 3345555667778899999998877664 3588888888899999999998777665543 25557889999
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcchhHHHHH
Q 048533 523 YWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNEILDLF 568 (591)
Q Consensus 523 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~ 568 (591)
|.+.|+.++|.+++-+..... -...+|.+.|++.++.
T Consensus 754 c~~~~n~~EA~KYiprv~~l~---------ekv~ay~~~~~~~eAa 790 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVGGLQ---------EKVKAYLRVGDVKEAA 790 (829)
T ss_pred HHhcccHHHHhhhhhccCChH---------HHHHHHHHhccHHHHH
Confidence 999999999999887654421 3455566666655544
No 299
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.04 E-value=0.2 Score=28.39 Aligned_cols=30 Identities=10% Similarity=0.153 Sum_probs=22.0
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCC
Q 048533 80 SHWTMIHILTKNKHFKSAQNMLEKIALRDF 109 (591)
Q Consensus 80 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 109 (591)
+++.++.++.+.|++++|.+.|+++....|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 456677777777888888888887776554
No 300
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.92 E-value=0.39 Score=27.38 Aligned_cols=31 Identities=13% Similarity=0.110 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHcCC
Q 048533 79 QSHWTMIHILTKNKHFKSAQNMLEKIALRDF 109 (591)
Q Consensus 79 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 109 (591)
.++..++.++...|++++|++.|++.....+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 4577889999999999999999999887653
No 301
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.91 E-value=8.9 Score=34.26 Aligned_cols=193 Identities=13% Similarity=0.130 Sum_probs=101.0
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCC-CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccc
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKH-SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSH 131 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (591)
+...|++|+..|+..++..|.... ...+.-.++.+..+.|++++....+..+... +.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY--------Ik-------------- 96 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY--------IK-------------- 96 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH--------HH--------------
Confidence 446899999999999886554111 1233446888889999998888888777641 11
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCH----HHHHH
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQL--GVVANI----HLYNV 205 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~----~~~~~ 205 (591)
.+..++ -+..+.|.++......++.+...+.|+.-... .-+ +. .|-..
T Consensus 97 -----------------------SAVTrN--ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAK-NeRLWFKTNtK 150 (440)
T KOG1464|consen 97 -----------------------SAVTRN--YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAK-NERLWFKTNTK 150 (440)
T ss_pred -----------------------HHHhcc--ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhh-cceeeeeccch
Confidence 111111 12333444444444444444333333322210 000 11 12234
Q ss_pred HHHHHHccCChhhHHHHHHHHhhC-----CC------CcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHH
Q 048533 206 LIHACCKSSDVDKVEKLLCEMEFK-----DV------RADLFTYNTLIALYCKKGMHYEALAVQDRMEREG-ISPDIVTY 273 (591)
Q Consensus 206 ll~~~~~~g~~~~a~~~~~~~~~~-----~~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~ 273 (591)
|...|...|++.+..++++++... |- ..=...|..-|..|....+-.....+|++..... .-|.+...
T Consensus 151 Lgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm 230 (440)
T KOG1464|consen 151 LGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM 230 (440)
T ss_pred HhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH
Confidence 556666667777777777666432 10 0113356666777777777777777777654421 12333322
Q ss_pred HHH----HHHHHhcCCHHHHHHHH
Q 048533 274 NSL----IHGFCREGRMREARRLF 293 (591)
Q Consensus 274 ~~l----~~~~~~~g~~~~A~~~~ 293 (591)
..+ ..++.+.|++++|..-|
T Consensus 231 GvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 231 GVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred hHHHHcCCccccccchHHHHHhHH
Confidence 221 12244567777765443
No 302
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.87 E-value=0.43 Score=27.28 Aligned_cols=31 Identities=6% Similarity=0.065 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHcCC
Q 048533 79 QSHWTMIHILTKNKHFKSAQNMLEKIALRDF 109 (591)
Q Consensus 79 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 109 (591)
.+|..++.++...|++++|+..|+++++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4677788888888888888888888877543
No 303
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.87 E-value=9 Score=34.23 Aligned_cols=186 Identities=10% Similarity=0.100 Sum_probs=93.4
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHhhc-------CCCChhhHHHHHHHHHhcC
Q 048533 248 KGMHYEALAVQDRMEREGISPDIV---TYNSLIHGFCREGRMREARRLFRDIKG-------ATPNHVTYTTLIDGYCRAN 317 (591)
Q Consensus 248 ~g~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~li~~~~~~g 317 (591)
...+++|+.-|++..+.......+ +...++..+.+.|++++....+.++.. ..-+..+.|.+++......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 346777777777776643222222 334556667777777777777766642 2223445566666555555
Q ss_pred CHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC------CCChHHHHHHHH
Q 048533 318 DLEEALRLREVMAAK--GVYPG---VVTYNSILRKLCKEGRIRDANRLLNEMNEK-----KI------APDNVTCNTLIN 381 (591)
Q Consensus 318 ~~~~a~~~~~~~~~~--~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~------~~~~~~~~~li~ 381 (591)
+.+-..++|+.-.+. ..+.+ -.|-..+...|...+.+.+..++++++... |- ..-...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 555555555433221 00000 112234455555666666666666665432 10 001234555566
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHH
Q 048533 382 AYCKIGDTASAMKVKNRMLEAGL-MLDQFTYKALIHGF-----CKAKEMDIAKELLFGM 434 (591)
Q Consensus 382 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~ 434 (591)
.|....+-.+...+|++...... -|.+... .+++-| .+.|++++|..-|-++
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHH
Confidence 66666666666666666543321 2333322 233322 3456666665444333
No 304
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.81 E-value=7.6 Score=36.91 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=17.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048533 240 TLIALYCKKGMHYEALAVQDRMEREGI 266 (591)
Q Consensus 240 ~li~~~~~~g~~~~a~~~~~~~~~~~~ 266 (591)
.+...+...|..+.|..+++.+.+.++
T Consensus 159 r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 159 RLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 344445567777777777777776554
No 305
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.70 E-value=0.27 Score=28.28 Aligned_cols=29 Identities=14% Similarity=-0.073 Sum_probs=14.0
Q ss_pred HHhhCCCccCHHhHHHHHHHHHhcCChhHH
Q 048533 155 QMRVHNLMPHLHACTVLLNSLAKDRLTDMV 184 (591)
Q Consensus 155 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 184 (591)
+.++.++. +..+|+.+...+...|++++|
T Consensus 4 kAie~~P~-n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 4 KAIELNPN-NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHCCC-CHHHHHHHHHHHHHCcCHHhh
Confidence 33344433 445555555555555555544
No 306
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.60 E-value=25 Score=38.74 Aligned_cols=23 Identities=9% Similarity=-0.035 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
...+.-+...+++.+|.++.++-
T Consensus 681 La~vr~~l~~~~y~~AF~~~Rkh 703 (1265)
T KOG1920|consen 681 LAKVRTLLDRLRYKEAFEVMRKH 703 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455677788888887766553
No 307
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.55 E-value=1.1 Score=33.07 Aligned_cols=60 Identities=17% Similarity=0.134 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 496 YAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSA 556 (591)
Q Consensus 496 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 556 (591)
+.++-++.+...++.|++.+..+.+++|.+.+++..|.++++-...+-- +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHHH
Confidence 4555666666666777777777777777777777777777777766521 12225555544
No 308
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.49 E-value=15 Score=36.18 Aligned_cols=179 Identities=12% Similarity=0.133 Sum_probs=121.7
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 048533 127 DGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVL 206 (591)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 206 (591)
+.+...+..++..+..+....-...+..+|+..|- +-.++..++.+|..+ ..+.-..+++++.+..+. |+..-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 44556777888999999999999999999998763 677899999999988 567788999999988775 55555566
Q ss_pred HHHHHccCChhhHHHHHHHHhhCCCCc--C---cccHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 048533 207 IHACCKSSDVDKVEKLLCEMEFKDVRA--D---LFTYNTLIALYCKKGMHYEALAVQDRMERE-GISPDIVTYNSLIHGF 280 (591)
Q Consensus 207 l~~~~~~g~~~~a~~~~~~~~~~~~~~--~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~ 280 (591)
...|-+ ++.+.+..+|.+...+=++. + ...|..+... -..+.+..+.+..++... |..--...+..+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 665555 88888888888876542221 1 1244444432 134566666666666543 3333445555666777
Q ss_pred HhcCCHHHHHHHHHHhhc-CCCChhhHHHHHHH
Q 048533 281 CREGRMREARRLFRDIKG-ATPNHVTYTTLIDG 312 (591)
Q Consensus 281 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~li~~ 312 (591)
....++.+|++++..+.+ ...|.-+-..++.-
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHH
Confidence 888899999999987765 33344444444443
No 309
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.48 E-value=14 Score=35.67 Aligned_cols=65 Identities=14% Similarity=0.043 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048533 407 DQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSP---SYCSYSWLVDGYCNKNNEEALLKLLDEFVS 471 (591)
Q Consensus 407 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 471 (591)
...++..++..+.+.|.++.|...+..+...+... .+.+.-.-.......|+..+|+..++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677788888888999999998888887643211 333444456667778888888888888877
No 310
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.39 E-value=3.8 Score=34.83 Aligned_cols=61 Identities=18% Similarity=0.133 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048533 375 TCNTLINAYCKIGDTASAMKVKNRMLEAGLMLD--QFTYKALIHGFCKAKEMDIAKELLFGML 435 (591)
Q Consensus 375 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 435 (591)
.+..+...|++.|+.+.|++.|.++.+....+. ...+..++......+++..+...+.++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455556666666666666666666655432222 2334455555555666666665555544
No 311
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.17 E-value=0.77 Score=42.11 Aligned_cols=56 Identities=20% Similarity=0.064 Sum_probs=37.5
Q ss_pred HhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 048533 48 LNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIAL 106 (591)
Q Consensus 48 ~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 106 (591)
++-|.++|.+++|+++|.......| |+...+.+-+.+|.+..+|..|..-++.+..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P---~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYP---HNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCC---CCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3445566777777777777765443 4666666777777777777777766666554
No 312
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.74 E-value=3.9 Score=40.88 Aligned_cols=26 Identities=8% Similarity=0.023 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHH
Q 048533 200 IHLYNVLIHACCKSSDVDKVEKLLCE 225 (591)
Q Consensus 200 ~~~~~~ll~~~~~~g~~~~a~~~~~~ 225 (591)
..-|..|.++..+.|++..|.+.|..
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHh
Confidence 33445555555555555555544443
No 313
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.72 E-value=0.46 Score=27.13 Aligned_cols=29 Identities=14% Similarity=0.082 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
++..++..|...|++++|+..|+++++.+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 56667777888888888888888877754
No 314
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=90.15 E-value=19 Score=37.56 Aligned_cols=59 Identities=7% Similarity=0.072 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 97 AQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 97 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
...+++-+.+.+..+.......++........++..+. .+..+.-+|.++.|.+++...
T Consensus 116 ~~~Ll~WvNr~~~~~~~~~~~~vl~~~~p~~~~p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 116 PEQLLDWVNRFHFPPSEELAEEVLSSEPPYEHDPDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHHHHHHTTS--SHHHHHTTSCSS-HSCSGSHHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred HHHHHHHHHHhCCCCchhHHHHHhccCCCCccchhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 45555555444445544444433332222223366666 677788889999999988543
No 315
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.14 E-value=26 Score=36.40 Aligned_cols=179 Identities=12% Similarity=0.049 Sum_probs=101.6
Q ss_pred chHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHH-HHhcCChHHHHHHHHHHhh-------CCCccCH
Q 048533 94 FKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIF-YANLKMTQDGLQVFDQMRV-------HNLMPHL 165 (591)
Q Consensus 94 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~-------~~~~~~~ 165 (591)
...|.++++.+.+.+........ -.....+ +....+++.|+.+|..+.+ .+ ..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~----------------g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~ 288 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYAL----------------GICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LP 288 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHH----------------HHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CC
Confidence 45688888887776532111100 1111122 5567889999999998877 44 23
Q ss_pred HhHHHHHHHHHhcC-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCChhhHHHHHHHHhhCCCCcCcccHH
Q 048533 166 HACTVLLNSLAKDR-----LTDMVWKVYKKMVQLGVVANIHLYNVLIHACCK-SSDVDKVEKLLCEMEFKDVRADLFTYN 239 (591)
Q Consensus 166 ~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (591)
.+...+..+|.+.. +.+.|..+|....+.|.+ +....-..+..... ..+...|.++|......| ...++-
T Consensus 289 ~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~ 364 (552)
T KOG1550|consen 289 PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIY 364 (552)
T ss_pred ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHH
Confidence 35667777777643 556688888888887754 44444333322222 245678888888888777 333333
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048533 240 TLIALYCK----KGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIK 297 (591)
Q Consensus 240 ~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 297 (591)
.+..+|.. ..+.+.|..++.+..+.| .|...--...+..+.. +.++.+.-.+..+.
T Consensus 365 ~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 365 RLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLA 424 (552)
T ss_pred HHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHH
Confidence 33333322 236677888888887776 3332222222333333 55555555554443
No 316
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.90 E-value=0.59 Score=26.58 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
++..++..|...|++++|++.|++..+..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 45667777888888888888888877654
No 317
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.90 E-value=8.3 Score=32.85 Aligned_cols=90 Identities=9% Similarity=-0.086 Sum_probs=71.1
Q ss_pred HHhcCChHHHHHHHHHHhhCCCccC----HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 048533 140 YANLKMTQDGLQVFDQMRVHNLMPH----LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSD 215 (591)
Q Consensus 140 ~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 215 (591)
+..+|++++|..-|..++..-+... ...|..-..++.+.+.++.|+.-..+.++.++. .......-..+|.+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhh
Confidence 6788999999999999988754333 234556667888999999999999999988765 34444445678899999
Q ss_pred hhhHHHHHHHHhhCC
Q 048533 216 VDKVEKLLCEMEFKD 230 (591)
Q Consensus 216 ~~~a~~~~~~~~~~~ 230 (591)
++.|+.-|+++...+
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998874
No 318
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.61 E-value=4.7 Score=33.73 Aligned_cols=117 Identities=14% Similarity=0.065 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHhhhCCCCCCCHHHHHH---HHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchH
Q 048533 57 PSLSCAFFKWAESAVPNYKHSLQSHWT---MIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL 133 (591)
Q Consensus 57 ~~~A~~~f~~~~~~~p~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (591)
++.|.+-++.....+|. +.+.... .+.-+++-.+..++..+++..... ++..+.+ .|...+++
T Consensus 7 FE~ark~aea~y~~nP~---DadnL~~WG~ALLELAqfk~g~es~~miedAisK--------~eeAL~I---~P~~hdAl 72 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL---DADNLTNWGGALLELAQFKQGPESKKMIEDAISK--------FEEALKI---NPNKHDAL 72 (186)
T ss_dssp HHHHHHHHHHHHHH-TT----HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--------HHHHHHH----TT-HHHH
T ss_pred HHHHHHHHHHHHHhCcH---hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH--------HHHHHhc---CCchHHHH
Confidence 56677777777666776 6654443 233344444445565566555442 2333332 14444566
Q ss_pred HHHHHHHHhcCC-----------hHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048533 134 SWLVIFYANLKM-----------TQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLG 195 (591)
Q Consensus 134 ~~l~~~~~~~~~-----------~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 195 (591)
..+..+|...+. +++|...|+++... .|+...|+.-+... .+|-+++.++.+.+
T Consensus 73 w~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 73 WCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 666666665432 33344444444443 45666666555544 23555666655554
No 319
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.37 E-value=56 Score=39.22 Aligned_cols=322 Identities=10% Similarity=-0.021 Sum_probs=164.4
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 048533 83 TMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLM 162 (591)
Q Consensus 83 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 162 (591)
+++.+-.+.|.+.+|...+|+-. +.+-... .....+..+...|+..++++...-+...-.. .
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~--~~ek~~~-------------~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~ 1449 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHR--STEKEKE-------------TEEALYFLLQNLYGSIHDPDGVEGVSARRFA---D 1449 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhc--cccchhH-------------HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---C
Confidence 56778888899999999988841 1111111 1122344455589999999888877764111 1
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHH-
Q 048533 163 PHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTL- 241 (591)
Q Consensus 163 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l- 241 (591)
|+ ...-+--....|++..|...|+.+.+.+.+ ....++.++......|.++.+....+...... .+....|+.+
T Consensus 1450 ~s---l~~qil~~e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~ 1524 (2382)
T KOG0890|consen 1450 PS---LYQQILEHEASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLG 1524 (2382)
T ss_pred cc---HHHHHHHHHhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHH
Confidence 22 233344456678999999999999887643 46677777777777888888777666655432 2233333333
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhc--CCHHHHHHHHHHhhc----------CCCC-hhhH
Q 048533 242 IALYCKKGMHYEALAVQDRMEREGISPDIVTYNS--LIHGFCRE--GRMREARRLFRDIKG----------ATPN-HVTY 306 (591)
Q Consensus 242 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~--g~~~~A~~~~~~~~~----------~~~~-~~~~ 306 (591)
+.+..+.++++....... . . +..+|.. ++....+. .+.-.-....+.++. ..-+ ...|
T Consensus 1525 ~eaaW~l~qwD~~e~~l~--~-~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y 1597 (2382)
T KOG0890|consen 1525 VEAAWRLSQWDLLESYLS--D-R----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSY 1597 (2382)
T ss_pred HHHHhhhcchhhhhhhhh--c-c----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHH
Confidence 344456677776666554 1 1 1122221 22222221 111111112222211 0001 1234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHhC----CC-CCChHHHHHHH
Q 048533 307 TTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNE-MNEK----KI-APDNVTCNTLI 380 (591)
Q Consensus 307 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~----~~-~~~~~~~~~li 380 (591)
..++....-..-......+...-.......+..-|..-+..-....+..+-+--+++ +... +. ..-...|-...
T Consensus 1598 ~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsA 1677 (2382)
T KOG0890|consen 1598 EILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSA 1677 (2382)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHH
Confidence 444433322111111111100000000111111122222211111112221111111 1111 11 11335688888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 381 NAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDA 437 (591)
Q Consensus 381 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 437 (591)
+.....|.++.|....-...+.+ -+..+...+..+...|+...|..++++.++.
T Consensus 1678 riaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1678 RIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 88888999999988877776664 3355666777788899999999999988854
No 320
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.89 E-value=13 Score=31.12 Aligned_cols=134 Identities=16% Similarity=0.166 Sum_probs=65.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048533 186 KVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREG 265 (591)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 265 (591)
+.+..+.+.+++|+...+..+++.+.+.|++.....++.- ++-+|.......+-.+ .+.+..+.++--+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~----~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY----HVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh----cccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH-
Confidence 4444555666667777777777777777765555444433 2233333333222211 12233344443333332
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048533 266 ISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAA 331 (591)
Q Consensus 266 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 331 (591)
=...+..++..+...|++-+|.++.+...+ .+......++.+....+|...-..+++-...
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~--~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHK--VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCC--cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 001344455666677777777777766532 2222334444555555554444444444433
No 321
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.43 E-value=38 Score=36.14 Aligned_cols=195 Identities=14% Similarity=0.030 Sum_probs=107.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChH-------HHHHHHH-HHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHH
Q 048533 348 LCKEGRIRDANRLLNEMNEKKIAPDNV-------TCNTLIN-AYCKIGDTASAMKVKNRMLEAG----LMLDQFTYKALI 415 (591)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~-~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~ 415 (591)
.....++++|..++.++...-..|+.. .++.+-. .....|+++.|.++-+.....- ..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678899998888776542222221 2333322 2345688899988888776541 223455667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHH--HHHHhcCCHHH--HHHHHHHHHHC---CCC---CCHHHHH
Q 048533 416 HGFCKAKEMDIAKELLFGMLDAGFSPSYCSY---SWLV--DGYCNKNNEEA--LLKLLDEFVSR---GLC---VDVSVYR 482 (591)
Q Consensus 416 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~--~~~~~~g~~~~--a~~~~~~~~~~---~~~---~~~~~~~ 482 (591)
.+..-.|++++|..+..+..+..-.-+...+ ..+. ..+..+|+... ....+...... ..+ +-..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 7788889999999988877653222233332 2222 33456673322 22333322221 011 1223444
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHHHhCCCCcCHHHH--HHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 483 ALIRRFCK-KEKVDYAQRLFNLMQGNGILGDSVIY--TSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 483 ~l~~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
.+..++.+ .+...++..-++........|-...+ ..|+.+....|+.++|...++++...
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 55555544 23333444444444333222222222 36788888999999999999988775
No 322
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.41 E-value=14 Score=30.93 Aligned_cols=31 Identities=10% Similarity=0.154 Sum_probs=16.9
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048533 396 KNRMLEAGLMLDQFTYKALIHGFCKAKEMDI 426 (591)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 426 (591)
.+.+.+.+++|++..+..++..+.+.|++..
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3344445555555666666666666555443
No 323
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.32 E-value=5.6 Score=38.61 Aligned_cols=125 Identities=10% Similarity=-0.058 Sum_probs=79.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048533 380 INAYCKIGDTASAMKVKNRML-EAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNN 458 (591)
Q Consensus 380 i~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 458 (591)
|.--...||...|-+-+.... .....|+.. ......+...|+++.+.+.+...... +.....+...+++...+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLI--QLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 333445677766654444443 332233433 33334466778888888877766542 23445677778888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048533 459 EEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNG 508 (591)
Q Consensus 459 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 508 (591)
+++|...-.-|....+. ++.+...........|-++++.-.|+++...+
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 88888888888776665 55555544444556677888888888887653
No 324
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=88.20 E-value=7 Score=28.74 Aligned_cols=45 Identities=22% Similarity=0.335 Sum_probs=36.1
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcC
Q 048533 61 CAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRD 108 (591)
Q Consensus 61 ~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 108 (591)
+.-++...+..|+ +..+.+.++..+...|++++|.+.+-.+.+.+
T Consensus 8 ~~al~~~~a~~P~---D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPD---DLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4556666777887 89999999999999999999999999888765
No 325
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.12 E-value=1 Score=27.09 Aligned_cols=29 Identities=10% Similarity=0.141 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIAL 106 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 106 (591)
..++..++..|...|++++|..+++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35678899999999999999999999876
No 326
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=87.62 E-value=31 Score=34.14 Aligned_cols=238 Identities=8% Similarity=0.085 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhCC-CCC-ChHHHHHHHHHHHHcCCHHHH
Q 048533 321 EALRLREVMAAKGVYPGVVTYNSILRKLCKE------GRIRDANRLLNEMNEKK-IAP-DNVTCNTLINAYCKIGDTASA 392 (591)
Q Consensus 321 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~------~~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~~~~~~a 392 (591)
....+|++.... .|+...++..|..|... ..+.....+++...+.+ ..+ ....|..+.-.++......++
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 344667666653 45666676666665432 23445555565554432 222 334555555555555544333
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHH-H-HHHH
Q 048533 393 MKVKNRMLEAGLMLDQFTYKALIHGFCKA-KEMDIA-KELLFGMLDAGFSPSYCSYSWLVDGYCNKNN-EEAL-L-KLLD 467 (591)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a-~-~~~~ 467 (591)
.. .+...++..+...|..-+....+. .+++-- ..++......-..+....|+... .|+ ++.. + .++.
T Consensus 378 a~---~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~ 449 (568)
T KOG2396|consen 378 AV---KLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIIS 449 (568)
T ss_pred HH---HhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHH
Confidence 22 222223344566665555544422 122211 12222222211112222222222 222 1111 1 1222
Q ss_pred HHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH--cCChhHHHHHHHHHHHC-C
Q 048533 468 EFVSRGLCVDVSVY-RALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWR--AGEPKACSDILDDMYRR-R 543 (591)
Q Consensus 468 ~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~-~ 543 (591)
...+. ..|+..++ +.++..+.+.|-..+|++.+..+... .+|+...|..++..-.. .-+...++.+|+.|... |
T Consensus 450 a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg 527 (568)
T KOG2396|consen 450 ALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG 527 (568)
T ss_pred HHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC
Confidence 22222 23444443 56778888999999999999999987 56777888887765332 22388899999999876 6
Q ss_pred CCCCHHHHHHHHHhhhcch---hHHHHHHHHH
Q 048533 544 LMITLKIYRSFSASYAKDN---EILDLFWSHV 572 (591)
Q Consensus 544 ~~~~~~~~~~li~~~~~~~---~~~~~~~~~~ 572 (591)
.|+..|-..+..=...| +..+.+|-.+
T Consensus 528 --~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 528 --ADSDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred --CChHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 57777776665544444 4445566555
No 327
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.50 E-value=28 Score=33.43 Aligned_cols=64 Identities=14% Similarity=0.048 Sum_probs=44.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhC--CCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 131 HVLSWLVIFYANLKMTQDGLQVFDQMRVH--NLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQL 194 (591)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 194 (591)
..+.-+...|..+|+++.|++.|.+.+.. +.+..+..|..+|..-...|+|........+..+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 35566788888899999999988886543 12224556667777777778887777766666553
No 328
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.29 E-value=14 Score=36.18 Aligned_cols=39 Identities=10% Similarity=0.002 Sum_probs=27.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q 048533 486 RRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWR 525 (591)
Q Consensus 486 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 525 (591)
-.|...|++-.|.+.|.+.... +.-++..|-.+..+|..
T Consensus 343 ~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 343 LLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 3466777777777777777664 45577777777777754
No 329
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.28 E-value=0.77 Score=25.81 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
++..++.+|.+.|++++|++.|+++++.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 34556777888888888888888887753
No 330
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.23 E-value=1.6 Score=26.20 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 514 VIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 514 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
.+++.+..+|...|++++|..+++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 5678888888888888888888888876
No 331
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.18 E-value=6.4 Score=28.97 Aligned_cols=46 Identities=17% Similarity=0.261 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 461 ALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQG 506 (591)
Q Consensus 461 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 506 (591)
++.+-++.+...++.|++.+..+.+++|.+.+++..|+++++-...
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444455555556666666666666666666666666665553
No 332
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.10 E-value=2.2 Score=39.34 Aligned_cols=56 Identities=9% Similarity=-0.059 Sum_probs=28.8
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048533 85 IHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRV 158 (591)
Q Consensus 85 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 158 (591)
+.-|+++|.|++|++.|.+..... |.++..+..-+.+|.+..++..|..=.+.++.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~------------------P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY------------------PHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC------------------CCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344556666666666665544422 33444445555555555555555544444433
No 333
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.89 E-value=15 Score=29.76 Aligned_cols=56 Identities=11% Similarity=-0.063 Sum_probs=37.8
Q ss_pred HHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048533 140 YANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGV 196 (591)
Q Consensus 140 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 196 (591)
-...++++++..+++.|.-..+. ....-..-...+...|+|++|+.+|+.+.+.+.
T Consensus 20 aL~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 33478888888888888766443 222223334456678888888888888887653
No 334
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.77 E-value=11 Score=28.11 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 461 ALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGN 507 (591)
Q Consensus 461 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 507 (591)
+..+-+..+...++.|++.+..+.+++|.+.+++..|+++++-...+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444555555566667777777777777777777777777766653
No 335
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.70 E-value=22 Score=34.97 Aligned_cols=39 Identities=8% Similarity=-0.020 Sum_probs=25.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 450 VDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFC 489 (591)
Q Consensus 450 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 489 (591)
.-.|...|++-.|.+.|.+.... +..++..|..+..+|.
T Consensus 342 G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 342 GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 33455667777777777777654 3446777777777665
No 336
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.59 E-value=28 Score=32.55 Aligned_cols=47 Identities=26% Similarity=0.302 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHhC
Q 048533 321 EALRLREVMAAKGVYPGVVTYNSILRKLCK--E----GRIRDANRLLNEMNEK 367 (591)
Q Consensus 321 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~--~----~~~~~a~~~~~~~~~~ 367 (591)
+...+++.+.+.|+.-+..+|.+....... . .....|..+|+.|.+.
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 344556666666666555444432222222 1 1234455555555554
No 337
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=86.55 E-value=83 Score=37.95 Aligned_cols=318 Identities=14% Similarity=0.022 Sum_probs=170.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCc--cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 048533 135 WLVIFYANLKMTQDGLQVFDQMRVHNLM--PHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCK 212 (591)
Q Consensus 135 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 212 (591)
.+..+-.+++.+.+|+..+++-.....+ .....+..+...|..-+++|....+...-.. +...+. -|-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHHHh
Confidence 4566777889999999999884211111 1223344444589999999988877764221 222333 3445677
Q ss_pred cCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHH
Q 048533 213 SSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSL-IHGFCREGRMREARR 291 (591)
Q Consensus 213 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~ 291 (591)
.|++..|...|+.+...+ ++....++.++......|.++..+-..+-...+ ..+....++.+ +.+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999999875 344777888887777788888777766555443 22233333332 334456677777666
Q ss_pred HHHHhhcCCCChhhHHHH--HHHHHhc--CCHHHHHHHHHHHHHC--------CCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 048533 292 LFRDIKGATPNHVTYTTL--IDGYCRA--NDLEEALRLREVMAAK--------GVYPG-VVTYNSILRKLCKEGRIRDAN 358 (591)
Q Consensus 292 ~~~~~~~~~~~~~~~~~l--i~~~~~~--g~~~~a~~~~~~~~~~--------~~~p~-~~~~~~ll~~~~~~~~~~~a~ 358 (591)
... ..+...|... .....+. .+.-.-.+.++.+.+. +..-+ ...|..++....-. +-.
T Consensus 1540 ~l~-----~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~----el~ 1610 (2382)
T KOG0890|consen 1540 YLS-----DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL----ELE 1610 (2382)
T ss_pred hhh-----cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH----HHH
Confidence 655 1223333332 2222221 1111111222222221 11100 12333333332211 111
Q ss_pred HHHHHHHhC----CCCCChHHHHHHHHHHHHcCCHHHHHHHHHH-HHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHH
Q 048533 359 RLLNEMNEK----KIAPDNVTCNTLINAYCKIGDTASAMKVKNR-MLEA----GLM-LDQFTYKALIHGFCKAKEMDIAK 428 (591)
Q Consensus 359 ~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~ 428 (591)
...+..... ....+...|..-+..-....+..+-+--+++ +... +.. --..+|....+...+.|+++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 111111111 1111222333332221111112111111111 1111 111 12457778888888899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 429 ELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSR 472 (591)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 472 (591)
..+-+..+.+ .| ..+--........|+...|+.++++..+.
T Consensus 1691 nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1691 NALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 9888887765 33 34555677788999999999999998865
No 338
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.51 E-value=13 Score=32.04 Aligned_cols=72 Identities=14% Similarity=0.027 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCcCHHHHHHHHHHHHHcCChhHH
Q 048533 460 EALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGN---GILGDSVIYTSLAYAYWRAGEPKAC 532 (591)
Q Consensus 460 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A 532 (591)
+.|.+.|-.+...+.--++.....|...|. ..+.++++.++-+..+. +-.+|+..+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444433334444444443333 34555555555554431 1234455555555555555555544
No 339
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=86.42 E-value=7.6 Score=38.83 Aligned_cols=104 Identities=13% Similarity=0.050 Sum_probs=66.8
Q ss_pred hhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCc
Q 048533 50 LYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGN 129 (591)
Q Consensus 50 ~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (591)
.+...|++..|.+.+..+....|. .+......++..+.+.|...+|-.++......+ ...
T Consensus 616 ywr~~gn~~~a~~cl~~a~~~~p~--~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~------------------~se 675 (886)
T KOG4507|consen 616 YWRAVGNSTFAIACLQRALNLAPL--QQDVPLVNLANLLIHYGLHLDATKLLLQALAIN------------------SSE 675 (886)
T ss_pred eeeecCCcHHHHHHHHHHhccChh--hhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc------------------ccC
Confidence 344457888888888877665553 122334567777778888888888777666543 112
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHH
Q 048533 130 SHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNS 174 (591)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 174 (591)
+-++..+.++|....++++|++.|.++.+...+ +...-+.|...
T Consensus 676 pl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i 719 (886)
T KOG4507|consen 676 PLTFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKLI 719 (886)
T ss_pred chHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHH
Confidence 334556677777778888888888887776554 44444544443
No 340
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.42 E-value=1.5 Score=24.87 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHc
Q 048533 79 QSHWTMIHILTKNKHFKSAQNMLEKIALR 107 (591)
Q Consensus 79 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 107 (591)
.++..++.++...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35677888888899999999988887764
No 341
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.09 E-value=1 Score=23.87 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCCCchHHHHHHH
Q 048533 80 SHWTMIHILTKNKHFKSAQNMLE 102 (591)
Q Consensus 80 ~~~~l~~~~~~~g~~~~A~~~~~ 102 (591)
+...++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45678888999999999988875
No 342
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.02 E-value=1.4 Score=23.36 Aligned_cols=23 Identities=4% Similarity=-0.130 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHH
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFD 154 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~ 154 (591)
....+...+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34556677777788888777765
No 343
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.51 E-value=2.6 Score=25.93 Aligned_cols=26 Identities=8% Similarity=0.115 Sum_probs=20.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 136 LVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 136 l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
++.+|...|+.+.|.+++++....+.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 66778888888888888888876543
No 344
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=84.19 E-value=7 Score=32.77 Aligned_cols=111 Identities=6% Similarity=0.028 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcC--
Q 048533 424 MDIAKELLFGMLDAGFSPSYCSYSWLVDGY---CNKNNEEALLKLLDEFVSR-----GLCVD-VSVYRALIRRFCKKE-- 492 (591)
Q Consensus 424 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g-- 492 (591)
++.|.+..+.....+ +.|...++.-..++ .+.....++.+++++++++ .+.|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 445555555543333 33444443333333 3344445566666665542 22333 356666666665432
Q ss_pred --C-------HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 493 --K-------VDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 493 --~-------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
+ +++|...|++..+ ..|+..+|+.-+.... +|-++..++.+.+
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred cCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 2 3444444444443 3566666665555542 3455555555554
No 345
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.19 E-value=48 Score=35.93 Aligned_cols=37 Identities=11% Similarity=0.167 Sum_probs=20.1
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 048533 176 AKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCK 212 (591)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 212 (591)
......+.+...++.+....-.++....+.++..|++
T Consensus 602 l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 602 LKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 3444555566666666555444455555555555543
No 346
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.14 E-value=3.1 Score=23.52 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 514 VIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 514 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
.+|..+...|...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35667777888888888888888877763
No 347
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.01 E-value=21 Score=28.94 Aligned_cols=59 Identities=7% Similarity=0.006 Sum_probs=44.1
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 85 IHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 85 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
+..-...+..+++..++.-+.-.. |..+.+-..-+..+...|++.+|+.+|+.+.+.+.
T Consensus 17 ~~~aL~~~d~~D~e~lLdALrvLr------------------P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 17 LMYALRSADPYDAQAMLDALRVLR------------------PNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhC------------------CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 333445889999999998887654 33344445556678999999999999999998754
No 348
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=83.48 E-value=23 Score=31.29 Aligned_cols=83 Identities=12% Similarity=0.035 Sum_probs=59.7
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCCCHHHHH-HHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccc
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKHSLQSHW-TMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSH 131 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (591)
..+.++.|++.|..++...|. ..+|+ +-+..+.+..+++.+..-.++.++..+. ...
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~----~~~Y~tnralchlk~~~~~~v~~dcrralql~~N------------------~vk 79 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPT----VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN------------------LVK 79 (284)
T ss_pred chhhhchHHHHHHHHHhcCCC----cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH------------------HHH
Confidence 346788999999999987774 54555 5777788888888888888777764321 112
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
....+.........+++|+..+.+..
T Consensus 80 ~h~flg~~~l~s~~~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 80 AHYFLGQWLLQSKGYDEAIKVLQRAY 105 (284)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHH
Confidence 34446667778888888888888873
No 349
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.41 E-value=23 Score=32.70 Aligned_cols=95 Identities=17% Similarity=0.134 Sum_probs=47.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 048533 305 TYTTLIDGYCRANDLEEALRLREVMAAKG---VYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLIN 381 (591)
Q Consensus 305 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 381 (591)
+...++..-...++++.+...+-++.... ..|+.. -..+++.+ -.-+.++++.++..=+..|+-||..++..+|+
T Consensus 66 ~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~l~D 143 (418)
T KOG4570|consen 66 TVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMD 143 (418)
T ss_pred ehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccchhhHHHHHH
Confidence 33444444444555666665555544321 011111 11122222 22344566666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 048533 382 AYCKIGDTASAMKVKNRMLE 401 (591)
Q Consensus 382 ~~~~~~~~~~a~~~~~~~~~ 401 (591)
.+.+.+++.+|..+...|..
T Consensus 144 ~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 144 SFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHhcccHHHHHHHHHHHHH
Confidence 66666666666655555544
No 350
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.41 E-value=15 Score=31.64 Aligned_cols=71 Identities=14% Similarity=0.012 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 048533 391 SAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDA---GFSPSYCSYSWLVDGYCNKNNEEAL 462 (591)
Q Consensus 391 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a 462 (591)
.|++.|-.+...+.--++.....+...| ...+.+++..++.+.++. +-.+|+..+..|+..+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3444444444443332333333333222 244555555555555431 1234445555555555555554444
No 351
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.73 E-value=78 Score=34.47 Aligned_cols=39 Identities=8% Similarity=0.031 Sum_probs=23.5
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048533 244 LYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCR 282 (591)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 282 (591)
.++.....+-+..+++.+....-.++....+.++..|..
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 355556666677777776665445555556666655543
No 352
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.32 E-value=13 Score=34.22 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 458 NEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQG 506 (591)
Q Consensus 458 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 506 (591)
++++++.++..=+..|+-||.++++.+++.+.+.+++.+|.++...|..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4455555555555556666666666666666666666666555555544
No 353
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=82.22 E-value=41 Score=30.89 Aligned_cols=134 Identities=13% Similarity=0.180 Sum_probs=78.3
Q ss_pred ChHHHHHHHHHHhh-CCCccCHHhHHHHHHHHHhc-C-ChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCChhhHH
Q 048533 145 MTQDGLQVFDQMRV-HNLMPHLHACTVLLNSLAKD-R-LTDMVWKVYKKMVQ-LGVVANIHLYNVLIHACCKSSDVDKVE 220 (591)
Q Consensus 145 ~~~~A~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~-~-~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~ 220 (591)
.+.+|+++|+.... ..+--|......+++..... + ....-.++.+.+.. .+-.++..+...++..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666663222 12333666677777777652 2 22223344444442 234456667777788888888888888
Q ss_pred HHHHHHhhC-CCCcCcccHHHHHHHHHhcCChhHHHHHHHH-----HHHCCCCCCHHHHHHHHH
Q 048533 221 KLLCEMEFK-DVRADLFTYNTLIALYCKKGMHYEALAVQDR-----MEREGISPDIVTYNSLIH 278 (591)
Q Consensus 221 ~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-----~~~~~~~p~~~~~~~l~~ 278 (591)
++++..... +...|...|...|......|+..-..++.++ +++.|+..+...-..+-.
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~ 286 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSE 286 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHH
Confidence 887776554 4556777788888888888876665555543 334445544444444333
No 354
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.01 E-value=1.2 Score=41.03 Aligned_cols=95 Identities=7% Similarity=-0.110 Sum_probs=55.4
Q ss_pred HcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhH
Q 048533 89 TKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHAC 168 (591)
Q Consensus 89 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 168 (591)
...|.++.|++.|...+..++ ....+|..-.++|.+.+.+..|+.=++...+.+.. +...|
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp------------------~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~y 185 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNP------------------PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGY 185 (377)
T ss_pred hcCcchhhhhcccccccccCC------------------chhhhcccccceeeeccCCchhhhhhhhhhccCcc-ccccc
Confidence 345667777777766666542 23344455555666667777777666666665433 33334
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 048533 169 TVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHL 202 (591)
Q Consensus 169 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 202 (591)
-.--.+....|+|++|...+....+.++.+....
T Consensus 186 kfrg~A~rllg~~e~aa~dl~~a~kld~dE~~~a 219 (377)
T KOG1308|consen 186 KFRGYAERLLGNWEEAAHDLALACKLDYDEANSA 219 (377)
T ss_pred chhhHHHHHhhchHHHHHHHHHHHhccccHHHHH
Confidence 4434444456677777777777777666544443
No 355
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.39 E-value=72 Score=33.17 Aligned_cols=147 Identities=18% Similarity=0.081 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHccCChhhHHHHHHHHhh-------CCCCcCcccHHHHHHHHHhcC-
Q 048533 181 TDMVWKVYKKMVQLGVVANIHLYNVLIHA---CCKSSDVDKVEKLLCEMEF-------KDVRADLFTYNTLIALYCKKG- 249 (591)
Q Consensus 181 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g- 249 (591)
...|.+.++...+.|.. ........+.. +....+++.|..+++.... .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 35677777777776543 22222222222 3355678888888877765 33 3345555666665532
Q ss_pred ----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHhhcCCCChhhHHHHHHHHH----hcCCHH
Q 048533 250 ----MHYEALAVQDRMEREGISPDIVTYNSLIHGFCR-EGRMREARRLFRDIKGATPNHVTYTTLIDGYC----RANDLE 320 (591)
Q Consensus 250 ----~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~ 320 (591)
+.+.|..++.+.-+.|.+ +.......+..... ..+...|.++|.......-....+ .+..+|. ...+..
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~-~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIY-RLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHH-HHHHHHHhCCCcCCCHH
Confidence 455567777666665532 33332222222211 234556666666654311111111 1111111 123456
Q ss_pred HHHHHHHHHHHCC
Q 048533 321 EALRLREVMAAKG 333 (591)
Q Consensus 321 ~a~~~~~~~~~~~ 333 (591)
.|..++.+..+.|
T Consensus 382 ~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHHcc
Confidence 6666666666655
No 356
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=81.33 E-value=12 Score=29.07 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 497 AQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 497 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
.++.+..+...++.|++.+...-+.+|.+.+|+..|.++|+-+..+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4445555555666777777777777777777777777777766665
No 357
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=81.09 E-value=95 Score=34.38 Aligned_cols=86 Identities=9% Similarity=0.081 Sum_probs=50.4
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH----cCC---CchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCC
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILT----KNK---HFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPD 127 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~----~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (591)
+.++.|+.+|+.....+|+=...-++.+.++-.+. .+| .+++|+.-|+.+......|
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 552 (932)
T PRK13184 489 KLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAP---------------- 552 (932)
T ss_pred HHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCc----------------
Confidence 56999999999999989884444555444332221 112 3445555555543322111
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048533 128 GNSHVLSWLVIFYANLKMTQDGLQVFDQMRVH 159 (591)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 159 (591)
--|.--+-.|-+.|++++=++.+..+.++
T Consensus 553 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (932)
T PRK13184 553 ---LEYLGKALVYQRLGEYNEEIKSLLLALKR 581 (932)
T ss_pred ---hHHHhHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 12222333577888888888877777665
No 358
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=80.77 E-value=46 Score=30.50 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHHccCChhhHHHHH
Q 048533 199 NIHLYNVLIHACCKSSDVDKVEKLL 223 (591)
Q Consensus 199 ~~~~~~~ll~~~~~~g~~~~a~~~~ 223 (591)
+......+...+.+.|++.+|...|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4455566666666666666665544
No 359
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.73 E-value=4.2 Score=25.02 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=15.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 519 LAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 519 l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
+..+|...|+.+.|++++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4556666666666666666666543
No 360
>PRK09687 putative lyase; Provisional
Probab=80.69 E-value=48 Score=30.75 Aligned_cols=9 Identities=22% Similarity=0.383 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 048533 532 CSDILDDMY 540 (591)
Q Consensus 532 A~~~~~~~~ 540 (591)
|...+..+.
T Consensus 253 a~p~L~~l~ 261 (280)
T PRK09687 253 LLPVLDTLL 261 (280)
T ss_pred HHHHHHHHH
Confidence 333333333
No 361
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=80.19 E-value=59 Score=31.48 Aligned_cols=126 Identities=9% Similarity=-0.020 Sum_probs=68.9
Q ss_pred CCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHH---hcCChhHHHHHHHHHHHCCCCCCHH
Q 048533 125 DPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLA---KDRLTDMVWKVYKKMVQLGVVANIH 201 (591)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~ 201 (591)
..|-..+++..+...+.++|+...|.+++++++=.- ..++......+. ..|.. . + .....-|..
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~----e~~~~~~F~~~~~~~~~g~~---r-----L-~~~~~eNR~ 101 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF----ERAFHPSFSPFRSNLTSGNC---R-----L-DYRRPENRQ 101 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHHhhhhhcccccCcc---c-----c-CCccccchH
Confidence 445666778888899999999999999888875310 001111110000 00100 0 0 000111444
Q ss_pred HHHHH---HHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHH-hcCChhHHHHHHHHHHH
Q 048533 202 LYNVL---IHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYC-KKGMHYEALAVQDRMER 263 (591)
Q Consensus 202 ~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~ 263 (591)
.|.++ +..+.+.|-+..|.++.+-+.+.+..-|+......|+.|+ +.++++--+++++....
T Consensus 102 fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 102 FFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44433 3456667777777777777777654445555555565554 55666666666666544
No 362
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.05 E-value=1.1 Score=36.64 Aligned_cols=51 Identities=10% Similarity=0.084 Sum_probs=20.5
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHH
Q 048533 138 IFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVY 188 (591)
Q Consensus 138 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 188 (591)
..+.+.+.+.....+++.+...+...+...++.++..|++.+..+...+++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 333344444444444444444333333444444444444444333333333
No 363
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=79.81 E-value=12 Score=29.61 Aligned_cols=69 Identities=19% Similarity=0.262 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHcCCC---chHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKH---FKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVF 153 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 153 (591)
+..+.++++-++.++.+ .++.+.+++.+.+.. .+.+..+.+..|+-++.+.+++++++++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~----------------~~~~rRe~lyYLAvg~yRlkeY~~s~~yv 94 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA----------------HPERRRECLYYLAVGHYRLKEYSKSLRYV 94 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc----------------CcccchhhhhhhHHHHHHHhhHHHHHHHH
Confidence 56677788888888754 455677777776522 34556678888999999999999999999
Q ss_pred HHHhhCCC
Q 048533 154 DQMRVHNL 161 (591)
Q Consensus 154 ~~~~~~~~ 161 (591)
+.+++..+
T Consensus 95 d~ll~~e~ 102 (149)
T KOG3364|consen 95 DALLETEP 102 (149)
T ss_pred HHHHhhCC
Confidence 99998754
No 364
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=79.60 E-value=47 Score=29.94 Aligned_cols=138 Identities=12% Similarity=-0.012 Sum_probs=66.2
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCC-CchHHHHHHHHHHHcCCCCchHHHHHHHhhc
Q 048533 45 KVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNK-HFKSAQNMLEKIALRDFLSTPSVLNALVKIH 123 (591)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (591)
...+.+..+...-+.|+.+-+.++..+|. +..++.---.++...+ ...+=.+.+.++...+
T Consensus 47 ~YfRAI~~~~E~S~RAl~LT~d~i~lNpA---nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n--------------- 108 (318)
T KOG0530|consen 47 DYFRAIIAKNEKSPRALQLTEDAIRLNPA---NYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN--------------- 108 (318)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCcc---cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC---------------
Confidence 33444444556666777777777776665 2222221111111111 2333344444444433
Q ss_pred CCCCCccchHHHHHHHHHhcCChH-HHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 048533 124 DDPDGNSHVLSWLVIFYANLKMTQ-DGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHL 202 (591)
Q Consensus 124 ~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 202 (591)
+.+-+++..--...-..|++. .=+++...|...+-+ +..+|..---++...+.++.-+..-.++++.++. |..+
T Consensus 109 ---pKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~-NNSA 183 (318)
T KOG0530|consen 109 ---PKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR-NNSA 183 (318)
T ss_pred ---ccchhHHHHHHHHHHHhcCcccchHHHHHHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh-ccch
Confidence 223333333222222334444 445556666655444 5566655555555556666666666666665554 4444
Q ss_pred HHH
Q 048533 203 YNV 205 (591)
Q Consensus 203 ~~~ 205 (591)
||.
T Consensus 184 WN~ 186 (318)
T KOG0530|consen 184 WNQ 186 (318)
T ss_pred hhe
Confidence 443
No 365
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=79.22 E-value=90 Score=32.96 Aligned_cols=30 Identities=10% Similarity=0.172 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIAL 106 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 106 (591)
+....|.++..+.|+|.+++|.++......
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~ 139 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRN 139 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGG
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhh
Confidence 344568899999999999999999955544
No 366
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.86 E-value=21 Score=26.61 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=21.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 488 FCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 488 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
+...|++++|..+.+.+ ..||...|.++ +-.+.|-.+++..-+-+|..+|
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~AL--ce~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLAL--CEWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHH--HHHhhccHHHHHHHHHHHHhCC
Confidence 34455555555444333 23444444433 2334444444444444444443
No 367
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.71 E-value=41 Score=28.80 Aligned_cols=92 Identities=10% Similarity=0.090 Sum_probs=60.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcC
Q 048533 450 VDGYCNKNNEEALLKLLDEFVSRGLC--VDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAG 527 (591)
Q Consensus 450 ~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 527 (591)
...+...+++++|..-++........ ....+--.|.+.....|.+++|...++...+.+. .......-.+++...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 34566788888888888877654111 0112223444556677888888888877765432 2333455677788888
Q ss_pred ChhHHHHHHHHHHHCC
Q 048533 528 EPKACSDILDDMYRRR 543 (591)
Q Consensus 528 ~~~~A~~~~~~~~~~~ 543 (591)
+-++|+.-|++..+.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 8888888888888875
No 368
>PRK11619 lytic murein transglycosylase; Provisional
Probab=78.40 E-value=97 Score=32.88 Aligned_cols=312 Identities=11% Similarity=-0.005 Sum_probs=167.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 048533 136 LVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSD 215 (591)
Q Consensus 136 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 215 (591)
-...+.+.+++...+..+. . .+.+...-...+.+....|+.++|......+-..|.. ....++.++..+.+.|.
T Consensus 105 ~l~~La~~~~w~~~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 105 FVNELARREDWRGLLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHHHHHHccCHHHHHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCC
Confidence 3444566777777776331 1 2336666677788888899988887777777666544 56677788888877665
Q ss_pred hhhHH--HHHHHHhhCCCCcCcccHHHHHHHH-----------Hh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-
Q 048533 216 VDKVE--KLLCEMEFKDVRADLFTYNTLIALY-----------CK-KGMHYEALAVQDRMEREGISPDIVTYNSLIHGF- 280 (591)
Q Consensus 216 ~~~a~--~~~~~~~~~~~~~~~~~~~~li~~~-----------~~-~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~- 280 (591)
+.... +=++.....| +...-..+...+ .. ..+...+...+.. +.|+...-..++.++
T Consensus 179 lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~ 250 (644)
T PRK11619 179 QDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFA 250 (644)
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHH
Confidence 54432 2222222222 111111222111 00 0111112111111 122321111122222
Q ss_pred -HhcCCHHHHHHHHHHhhc-CC--CC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048533 281 -CREGRMREARRLFRDIKG-AT--PN--HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRI 354 (591)
Q Consensus 281 -~~~g~~~~A~~~~~~~~~-~~--~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 354 (591)
....+.+.|...+..... .. +. ...+..+.......+...++...++...... .+......-+......+++
T Consensus 251 Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw 328 (644)
T PRK11619 251 SVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDR 328 (644)
T ss_pred HHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCH
Confidence 234566889999988643 11 11 2234444444444433567777777654332 2444445555555688999
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------------CCCCC------HHH------
Q 048533 355 RDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEA------------GLMLD------QFT------ 410 (591)
Q Consensus 355 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------------~~~~~------~~~------ 410 (591)
+.+...+..|.... .-...-..=+.+++...|+.++|...|+.+... |.++. +..
T Consensus 329 ~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~ 407 (644)
T PRK11619 329 RGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQ 407 (644)
T ss_pred HHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhcc
Confidence 99998888876542 223444455677777799999999999887432 11100 000
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048533 411 --YKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLD 467 (591)
Q Consensus 411 --~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 467 (591)
-..-+..+...|....|...+..+... .+......+.....+.|..+.++....
T Consensus 408 ~~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 408 GPEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred ChHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 011223445667777777777776653 234444555555556777766665554
No 369
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.69 E-value=3.3 Score=29.09 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=42.0
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHH
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNML 101 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 101 (591)
+.+-|. +| ..+..++|+..++.+++..++-+.-..+...++.++...|++.++++.-
T Consensus 10 ie~Glk-LY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 10 IEKGLK-LY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHHH-Hh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 55 3478899999999999877763333455557889999999999987764
No 370
>PRK09687 putative lyase; Provisional
Probab=77.60 E-value=61 Score=30.11 Aligned_cols=235 Identities=11% Similarity=0.022 Sum_probs=136.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCCHHHHH
Q 048533 267 SPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDL----EEALRLREVMAAKGVYPGVVTYN 342 (591)
Q Consensus 267 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~~~~~~~~p~~~~~~ 342 (591)
.+|.......+..+...|..+- ...+..+.. .+|...-...+.++...|+. +++...+..+... .++..+-.
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~-~~~l~~ll~-~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDV-FRLAIELCS-SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchH-HHHHHHHHh-CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 3566677777777777775333 333333332 45666666667777777763 4567777666433 35666666
Q ss_pred HHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 343 SILRKLCKEGRI-----RDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHG 417 (591)
Q Consensus 343 ~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 417 (591)
..+.++...+.. ..+...+...... ++..+-...+.++.+.++ +.+...+-.+.+. ++...-...+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHH
Confidence 666666655421 2333444333332 355566666777777776 4566666666553 354554555555
Q ss_pred HHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048533 418 FCKAK-EMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDY 496 (591)
Q Consensus 418 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 496 (591)
+.+.+ +...+...+..+.. .++..+-...+.++.+.|+. .|...+-...+.+ + .....+.++...|.. +
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~ 252 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-T 252 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-h
Confidence 55543 23456666666664 35666777777788888774 4555555555542 2 234566777777775 6
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 048533 497 AQRLFNLMQGNGILGDSVIYTSLAYAYW 524 (591)
Q Consensus 497 a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 524 (591)
|...+..+.+. .||..+-...+++|.
T Consensus 253 a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 253 LLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 77777777764 346666555555553
No 371
>COG0819 TenA Putative transcription activator [Transcription]
Probab=76.84 E-value=33 Score=30.28 Aligned_cols=105 Identities=7% Similarity=0.038 Sum_probs=63.5
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH-----------HHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHH
Q 048533 469 FVSRGLCVDVSVYRALIRRFCKKEKVDYAQR-----------LFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILD 537 (591)
Q Consensus 469 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-----------~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 537 (591)
+.+..+.|....|...+...+..|++.+... +.+++.+.+..+....|...++.|... ++.++.+.+.
T Consensus 100 ~~~~~~~~~~~aYt~ym~~~~~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~~~~~~~~Y~~Wi~~Y~s~-ef~~~v~~~~ 178 (218)
T COG0819 100 LLKTEPSPANKAYTRYLLDTAYSGSFAELLAALLPCLWGYAEIGKRLKAKPRASPNPPYQEWIDTYASE-EFQEAVEELE 178 (218)
T ss_pred HHhcCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcHHHHHHHcCCH-HHHHHHHHHH
Confidence 3444455556666666666666666555433 222333333223456688888888653 3444444444
Q ss_pred HHHHC-CCCCCHHHHHHHHHhhhcchhHHHHHHHHHHh
Q 048533 538 DMYRR-RLMITLKIYRSFSASYAKDNEILDLFWSHVVD 574 (591)
Q Consensus 538 ~~~~~-~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~ 574 (591)
+++++ .-..++.-+..|...|...-+++-.||++.-+
T Consensus 179 ~~ld~~~~~~~~~~~~~l~~iF~~ss~~E~~Fwd~a~~ 216 (218)
T COG0819 179 ALLDSLAENSSEEELEKLKQIFLTASRFELAFWDMAYR 216 (218)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44443 33345667888999999999999999998754
No 372
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=76.67 E-value=1.2 Score=36.31 Aligned_cols=86 Identities=14% Similarity=0.208 Sum_probs=59.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcC
Q 048533 170 VLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKG 249 (591)
Q Consensus 170 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 249 (591)
.++..+.+.+........++.+.+.+...+....+.++..|++.++.++..++++.... .-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcc
Confidence 35666677788888888888888776666788888899999998887888887772221 22335566666667
Q ss_pred ChhHHHHHHHHHH
Q 048533 250 MHYEALAVQDRME 262 (591)
Q Consensus 250 ~~~~a~~~~~~~~ 262 (591)
.++++.-++.++.
T Consensus 85 l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 85 LYEEAVYLYSKLG 97 (143)
T ss_dssp SHHHHHHHHHCCT
T ss_pred hHHHHHHHHHHcc
Confidence 7777776666543
No 373
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.04 E-value=56 Score=28.93 Aligned_cols=18 Identities=0% Similarity=0.121 Sum_probs=8.8
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 048533 455 NKNNEEALLKLLDEFVSR 472 (591)
Q Consensus 455 ~~g~~~~a~~~~~~~~~~ 472 (591)
..+++.+|+.+|++....
T Consensus 166 ~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555554433
No 374
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=75.94 E-value=90 Score=31.24 Aligned_cols=178 Identities=13% Similarity=0.094 Sum_probs=90.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHH
Q 048533 301 PNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLI 380 (591)
Q Consensus 301 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 380 (591)
.|....-+++..+..+..++-...+..+|...| -+...|..++.+|... ..++-..+++++.+..+. |...-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 355556666677766666666667777776654 3555666677776666 445666666666665332 333333444
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 048533 381 NAYCKIGDTASAMKVKNRMLEAGLML--D---QFTYKALIHGFCKAKEMDIAKELLFGMLD-AGFSPSYCSYSWLVDGYC 454 (591)
Q Consensus 381 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 454 (591)
..|-+ ++.+.+..+|.++...-++. + ...|.-+... -..+.+....+..++.+ .|...-...+..+-..|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 44433 66666666666665442210 0 1122222211 12344555555555443 222223334444445555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 455 NKNNEEALLKLLDEFVSRGLCVDVSVYRALIR 486 (591)
Q Consensus 455 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 486 (591)
...++++|++++..+.+.+-+ |..+-..++.
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~ 247 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEK-DVWARKEIIE 247 (711)
T ss_pred cccCHHHHHHHHHHHhhhcch-hhhHHHHHHH
Confidence 566666666666666655332 3333333333
No 375
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=75.88 E-value=4.1 Score=21.96 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=20.6
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHc
Q 048533 80 SHWTMIHILTKNKHFKSAQNMLEKIALR 107 (591)
Q Consensus 80 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 107 (591)
++..++..+...|++++|...++...+.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4566777778888888888887776653
No 376
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=75.22 E-value=60 Score=28.87 Aligned_cols=116 Identities=12% Similarity=-0.059 Sum_probs=67.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHH
Q 048533 418 FCKAKEMDIAKELLFGMLDAGFSPSY-CSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVS-VYRALIRRFCKKEKVD 495 (591)
Q Consensus 418 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~ 495 (591)
|...++++.|...+.+.+.. .|+. .-|..-+-++.+..+++.+..--..+++. .||.. ....+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 33445667777766666654 3554 33444555666677777777666666654 33433 3344555667777888
Q ss_pred HHHHHHHHHHh----CCCCcCHHHHHHHHHHHHHcCChhHHHHHHH
Q 048533 496 YAQRLFNLMQG----NGILGDSVIYTSLAYAYWRAGEPKACSDILD 537 (591)
Q Consensus 496 ~a~~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 537 (591)
+|+..+.+... ..+.|...++..|..+=.+.=...+..++.+
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 88888777643 3344555666666655444333344444333
No 377
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=74.73 E-value=5.8 Score=38.66 Aligned_cols=99 Identities=12% Similarity=-0.027 Sum_probs=67.9
Q ss_pred CCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchH
Q 048533 54 CHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL 133 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (591)
.+.++.|.+++.++++..|+ ....+..-+.++.+.+++..|+.=+.++++..+ .....|
T Consensus 17 ~~~fd~avdlysKaI~ldpn---ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP------------------~~~K~Y 75 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPN---CAIYFANRALAHLKVESFGGALHDALKAIELDP------------------TYIKAY 75 (476)
T ss_pred cchHHHHHHHHHHHHhcCCc---ceeeechhhhhheeechhhhHHHHHHhhhhcCc------------------hhhhee
Confidence 47889999999999998886 455455566788888999999888888777542 223344
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHH
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSL 175 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 175 (591)
..-+.++.+.+.+.+|+..|+..... .|+.......+.-|
T Consensus 76 ~rrg~a~m~l~~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 76 VRRGTAVMALGEFKKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred eeccHHHHhHHHHHHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 44455566667777787777777664 45655555555444
No 378
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.67 E-value=46 Score=33.84 Aligned_cols=128 Identities=11% Similarity=-0.006 Sum_probs=85.3
Q ss_pred HhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCC
Q 048533 48 LNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPD 127 (591)
Q Consensus 48 ~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (591)
..+..++|-.++|+.+- ++ ..-. .....+.|+++.|.++..+..
T Consensus 621 a~Fle~~g~~e~AL~~s-------~D----~d~r---Felal~lgrl~iA~~la~e~~---------------------- 664 (794)
T KOG0276|consen 621 AHFLESQGMKEQALELS-------TD----PDQR---FELALKLGRLDIAFDLAVEAN---------------------- 664 (794)
T ss_pred HhHhhhccchHhhhhcC-------CC----hhhh---hhhhhhcCcHHHHHHHHHhhc----------------------
Confidence 44445556677766552 22 1111 223457799999988865542
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 128 GNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLI 207 (591)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 207 (591)
++.-|..|.++..+.+++..|.+.|.+... |..|+-.+...|+.+....+-....+.|.. |. ..
T Consensus 665 -s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N~-----AF 728 (794)
T KOG0276|consen 665 -SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-NL-----AF 728 (794)
T ss_pred -chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-ch-----HH
Confidence 234577888999999999999999887653 456666777778877766777777777654 32 23
Q ss_pred HHHHccCChhhHHHHHHHHh
Q 048533 208 HACCKSSDVDKVEKLLCEME 227 (591)
Q Consensus 208 ~~~~~~g~~~~a~~~~~~~~ 227 (591)
-++...|+++++.+++.+-.
T Consensus 729 ~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHHcCCHHHHHHHHHhcC
Confidence 45667899999988886653
No 379
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=74.42 E-value=1.3e+02 Score=32.43 Aligned_cols=224 Identities=15% Similarity=0.030 Sum_probs=119.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHH-HHHHhcCCHHHHHHHHHHhhc------CCCChhhHHHHH
Q 048533 245 YCKKGMHYEALAVQDRMEREGISPDI-------VTYNSLI-HGFCREGRMREARRLFRDIKG------ATPNHVTYTTLI 310 (591)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~-~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~li 310 (591)
.....++.+|..++.++...-..|+. ..++.+- ......|++++|.++-+.... ..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34578899999988887664222221 1233322 223456888999888887754 223455667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHHhcCCH--HHHHHHHHHHHhC---CCC---CChHHHH
Q 048533 311 DGYCRANDLEEALRLREVMAAKGVYPGVVTYNSIL-----RKLCKEGRI--RDANRLLNEMNEK---KIA---PDNVTCN 377 (591)
Q Consensus 311 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll-----~~~~~~~~~--~~a~~~~~~~~~~---~~~---~~~~~~~ 377 (591)
.+..-.|++++|..+.....+....-+...+.... ..+...|+. .+.+..+...... ..+ +-..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 88888999999998877666542233443333222 224456633 2333333333221 011 1123344
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHH
Q 048533 378 TLINAYCKI-GDTASAMKVKNRMLEAGLMLDQFT--YKALIHGFCKAKEMDIAKELLFGMLDAGF----SPSYCSYSWLV 450 (591)
Q Consensus 378 ~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~ 450 (591)
.++.++.+. +...++..-++--......|-... +..|+......|+.++|...+.++..... .++..+-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 445555441 112222222222222221222222 23667778889999999999998875322 22322222233
Q ss_pred HH--HHhcCCHHHHHHHHHH
Q 048533 451 DG--YCNKNNEEALLKLLDE 468 (591)
Q Consensus 451 ~~--~~~~g~~~~a~~~~~~ 468 (591)
.. ....|+.+.+.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 22 3357888887777665
No 380
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=74.20 E-value=73 Score=29.35 Aligned_cols=63 Identities=6% Similarity=0.123 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048533 440 SPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSR-GLCVDVSVYRALIRRFCKKEKVDYAQRLFN 502 (591)
Q Consensus 440 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 502 (591)
.++..+...++..+++.+++..-.++|+..... ++.-|...|..+|+.....|+..-..++..
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 445555556666666666666666666655544 444456666666666666666555544444
No 381
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=73.84 E-value=6.4 Score=21.06 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVH 159 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 159 (591)
++..++..|...+++++|...|++.++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4555666777777777777777776654
No 382
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.67 E-value=1.6e+02 Score=32.98 Aligned_cols=170 Identities=11% Similarity=0.012 Sum_probs=101.9
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhc--------CCCCCc----cchHHHHHHHHHhcCChHH
Q 048533 81 HWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIH--------DDPDGN----SHVLSWLVIFYANLKMTQD 148 (591)
Q Consensus 81 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~----~~~~~~l~~~~~~~~~~~~ 148 (591)
.+.++.+|...|+..+|+..|.++.. +...+.++.+.+.... +..+.. .+.|.+.++.+-+.+-.+.
T Consensus 923 rfmlg~~yl~tge~~kAl~cF~~a~S-g~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~ 1001 (1480)
T KOG4521|consen 923 RFMLGIAYLGTGEPVKALNCFQSALS-GFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEE 1001 (1480)
T ss_pred HHhhheeeecCCchHHHHHHHHHHhh-ccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHH
Confidence 34566678888888888888887764 4444555444444321 111122 2457788999999999999
Q ss_pred HHHHHHHHhhCCC--ccC-HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCChhh---
Q 048533 149 GLQVFDQMRVHNL--MPH-LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANI----HLYNVLIHACCKSSDVDK--- 218 (591)
Q Consensus 149 A~~~~~~~~~~~~--~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~--- 218 (591)
+.++-..+++.-. .|+ ..+++.+.+.....|.+.+|.+.+-.- ||. .....++-.+..+|.++.
T Consensus 1002 vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n------pdserrrdcLRqlvivLfecg~l~~L~~ 1075 (1480)
T KOG4521|consen 1002 VCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN------PDSERRRDCLRQLVIVLFECGELEALAT 1075 (1480)
T ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC------CcHHHHHHHHHHHHHHHHhccchHHHhh
Confidence 9998888776521 122 345677778888888877776655332 333 345566667777777543
Q ss_pred ---------HHH-HHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHH
Q 048533 219 ---------VEK-LLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAV 257 (591)
Q Consensus 219 ---------a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 257 (591)
... +++..-+...-.....|+.|-..+...+++.+|-.+
T Consensus 1076 fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1076 FPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred CCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 233 233322222122233455555566677888776544
No 383
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=73.52 E-value=13 Score=37.24 Aligned_cols=118 Identities=9% Similarity=-0.031 Sum_probs=79.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 048533 440 SPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSL 519 (591)
Q Consensus 440 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 519 (591)
.|-..+++...-.....|+...|.+.+..+....+.-..+..-.|.+...+.|....|-.++.+..... ...+-++-.+
T Consensus 604 ~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~ 682 (886)
T KOG4507|consen 604 APIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSL 682 (886)
T ss_pred CCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhc
Confidence 343333333333334578889999988887754333233445566667777888888888888877654 3356777888
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhh
Q 048533 520 AYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYA 559 (591)
Q Consensus 520 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 559 (591)
..++....+.+.|++.|+++++.... .+++-+.|...-|
T Consensus 683 g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 683 GNAYLALKNISGALEAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred chhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 89999999999999999999987543 4555555544433
No 384
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=72.90 E-value=15 Score=32.30 Aligned_cols=56 Identities=9% Similarity=0.043 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHhhhC--CCCCC-CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCc
Q 048533 57 PSLSCAFFKWAESAV--PNYKH-SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLST 112 (591)
Q Consensus 57 ~~~A~~~f~~~~~~~--p~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 112 (591)
...|++.|..+.+.. |...- ...+.+.++....+.|++++|.+.|.++......+.
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 456778888776543 22121 235556788999999999999999999988654444
No 385
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.77 E-value=5.6 Score=28.02 Aligned_cols=52 Identities=13% Similarity=0.013 Sum_probs=40.5
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHH
Q 048533 88 LTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFD 154 (591)
Q Consensus 88 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 154 (591)
+..+++.++|+..++++.+....+ ++...++.+++.+|...|+++++++.-.
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~---------------~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDR---------------EDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCCh---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 448899999999999998865432 3344578889999999999999887643
No 386
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.64 E-value=32 Score=30.03 Aligned_cols=73 Identities=12% Similarity=0.023 Sum_probs=48.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHH
Q 048533 136 LVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV--ANIHLYNVLIHA 209 (591)
Q Consensus 136 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~ 209 (591)
.++.+.+.+++.+|+...+.-.+..+. +...-..++..++-.|+|++|..-++-.-+.... +-..+|..+|++
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344566777788888888777776554 5666677778888888888887766666554322 234556666654
No 387
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=72.35 E-value=12 Score=24.11 Aligned_cols=31 Identities=16% Similarity=0.015 Sum_probs=24.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHNLM 162 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 162 (591)
.+..++.++.+.|++++|.+..+.+++..|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 4667788899999999999999999887543
No 388
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=71.41 E-value=35 Score=29.78 Aligned_cols=129 Identities=11% Similarity=0.050 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCcCHHHHHHHHHH
Q 048533 445 SYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGN--GILGDSVIYTSLAYA 522 (591)
Q Consensus 445 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~ 522 (591)
+.+.-++.+.+.+.+.+++...+.-++..+. |...-..+++.++-.|+|++|..-++..-.. ...+...+|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445567788889999999999988887544 6667778889999999999999888877653 123334677777655
Q ss_pred HHHcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHhhhc----chhHHHHHHHHHHhcCCCCh
Q 048533 523 YWRAGEPKACSDILDDMYRRRLM--ITLKIYRSFSASYAK----DNEILDLFWSHVVDRGLMSK 580 (591)
Q Consensus 523 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~----~~~~~~~~~~~~~~~~~~~~ 580 (591)
-.-.. ++|.-=..-|+. |.+.-...+..+..- .|+..+++.+...+.+.++.
T Consensus 82 ea~R~------evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 82 EAARN------EVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred HHHHH------HHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 33211 122222222222 344444455555433 35667788888777665543
No 389
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=71.12 E-value=58 Score=29.72 Aligned_cols=87 Identities=16% Similarity=0.082 Sum_probs=42.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHH-----
Q 048533 172 LNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYC----- 246 (591)
Q Consensus 172 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----- 246 (591)
|.+++..++|.+++...-+-.+.--+....+...-|-.|.+.|++..+.++-.......-..+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 455555555555544333332221122333444445556677777666666666554322223334555544433
Q ss_pred hcCChhHHHHHH
Q 048533 247 KKGMHYEALAVQ 258 (591)
Q Consensus 247 ~~g~~~~a~~~~ 258 (591)
-.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 346666666555
No 390
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.39 E-value=1.2e+02 Score=30.20 Aligned_cols=398 Identities=14% Similarity=0.060 Sum_probs=204.9
Q ss_pred ChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH-cCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHH
Q 048533 56 IPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILT-KNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLS 134 (591)
Q Consensus 56 ~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (591)
+..++++..+....-.|.+.-...++..++..+. -..+++.|..-+++.....-....+ .+...+.++
T Consensus 24 kIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~f-----------ydvKf~a~S 92 (629)
T KOG2300|consen 24 KIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSF-----------YDVKFQAAS 92 (629)
T ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccH-----------HhhhhHHHH
Confidence 4456777777665444443333455667776554 4588999999888865422111110 123446778
Q ss_pred HHHHHHHhcC-ChHHHHHHHHHHhhCCCc-c--CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-
Q 048533 135 WLVIFYANLK-MTQDGLQVFDQMRVHNLM-P--HLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHA- 209 (591)
Q Consensus 135 ~l~~~~~~~~-~~~~A~~~~~~~~~~~~~-~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~- 209 (591)
.|...|.... .+..|..++++.++..-. | +-.....|+....-.+++..|.+++.---+. -.+-...|..++-.
T Consensus 93 lLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~s-Ad~~~~~ylr~~ftl 171 (629)
T KOG2300|consen 93 LLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAES-ADHICFPYLRMLFTL 171 (629)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccc-cchhhhHHHHHHHHH
Confidence 8888888877 788899999988775321 1 1122345666777788898888884432221 11112223222221
Q ss_pred -----HHcc---CChhhHHHHHHHHhhCCCCcCccc--------HHHHHHHHHhcCChhHHHHHHHHHHHC---CCC---
Q 048533 210 -----CCKS---SDVDKVEKLLCEMEFKDVRADLFT--------YNTLIALYCKKGMHYEALAVQDRMERE---GIS--- 267 (591)
Q Consensus 210 -----~~~~---g~~~~a~~~~~~~~~~~~~~~~~~--------~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~--- 267 (591)
.... .++..+.....++... ..+|..- ...-+.-|.-.|+...+...++++.+. +-.
T Consensus 172 s~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~ 250 (629)
T KOG2300|consen 172 SMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSR 250 (629)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCC
Confidence 1222 2344444455555543 2334221 122234455678877777777766542 111
Q ss_pred ---------CCHHHHHHHHH----H---------HHhcCCHHHHHHHHHHhh-------cCCCChhhHH--------HHH
Q 048533 268 ---------PDIVTYNSLIH----G---------FCREGRMREARRLFRDIK-------GATPNHVTYT--------TLI 310 (591)
Q Consensus 268 ---------p~~~~~~~l~~----~---------~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~--------~li 310 (591)
|....+..+-. + -.-.|-+++|.++-+++. ..+-....++ .++
T Consensus 251 ~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv 330 (629)
T KOG2300|consen 251 GHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIV 330 (629)
T ss_pred CccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHH
Confidence 22222211110 0 012344555555544432 2111222222 222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC-CCCCH-------HHHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCCCChHHH--HHH
Q 048533 311 DGYCRANDLEEALRLREVMAAKG-VYPGV-------VTYNSILRKL-CKEGRIRDANRLLNEMNEKKIAPDNVTC--NTL 379 (591)
Q Consensus 311 ~~~~~~g~~~~a~~~~~~~~~~~-~~p~~-------~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l 379 (591)
-+-.-.|+..+|++-+..|.+.- -.|.+ .....++..| +..+.++.|+.-|....+.--..|...+ ..+
T Consensus 331 ~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnl 410 (629)
T KOG2300|consen 331 MCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNL 410 (629)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhH
Confidence 33345788999988888887642 12331 1123333333 4567888888888777664222233222 334
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH--------HHHH--HHhcCCHHHHHHHHHHHHHCCC-----CCCHH
Q 048533 380 INAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKA--------LIHG--FCKAKEMDIAKELLFGMLDAGF-----SPSYC 444 (591)
Q Consensus 380 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------l~~~--~~~~~~~~~a~~~~~~~~~~~~-----~~~~~ 444 (591)
...|.+.|+.+.-.++++.+-. ++..++.. ++.+ ....+++.+|...+.+-++..- +....
T Consensus 411 Ai~YL~~~~~ed~y~~ld~i~p----~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~ 486 (629)
T KOG2300|consen 411 AISYLRIGDAEDLYKALDLIGP----LNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTAC 486 (629)
T ss_pred HHHHHHhccHHHHHHHHHhcCC----CCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHH
Confidence 5567777777766666555432 21111111 1112 2467888888888887765321 11112
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048533 445 SYSWLVDGYCNKNNEEALLKLLDEFV 470 (591)
Q Consensus 445 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 470 (591)
.+..+...+...|+..++.+...-..
T Consensus 487 ~LvLLs~v~lslgn~~es~nmvrpam 512 (629)
T KOG2300|consen 487 SLVLLSHVFLSLGNTVESRNMVRPAM 512 (629)
T ss_pred HHHHHHHHHHHhcchHHHHhccchHH
Confidence 22333444556777777766665444
No 391
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.29 E-value=3.7 Score=38.06 Aligned_cols=98 Identities=8% Similarity=-0.128 Sum_probs=78.2
Q ss_pred HHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhH
Q 048533 140 YANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKV 219 (591)
Q Consensus 140 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 219 (591)
....|.++.|++.|...++.++. ....|..-.+++.+.+....|++=+....+.+.. +..-|-.--.+....|++++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~-~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPP-LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccccCCc-hhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHH
Confidence 44568899999999999998764 7777888888999999999999999998887654 344455555666678999999
Q ss_pred HHHHHHHhhCCCCcCcccHH
Q 048533 220 EKLLCEMEFKDVRADLFTYN 239 (591)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~ 239 (591)
...+....+.+..+....|.
T Consensus 202 a~dl~~a~kld~dE~~~a~l 221 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSATL 221 (377)
T ss_pred HHHHHHHHhccccHHHHHHH
Confidence 99999999988766655544
No 392
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=70.04 E-value=1.5e+02 Score=31.26 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=12.5
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 048533 453 YCNKNNEEALLKLLDEFVSR 472 (591)
Q Consensus 453 ~~~~g~~~~a~~~~~~~~~~ 472 (591)
+.-.|+.++|..+.+++...
T Consensus 511 L~~ygrqe~Ad~lI~el~~d 530 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRD 530 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcC
Confidence 44556666777777776643
No 393
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=70.02 E-value=79 Score=28.88 Aligned_cols=86 Identities=10% Similarity=-0.022 Sum_probs=38.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH----
Q 048533 310 IDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCK---- 385 (591)
Q Consensus 310 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 385 (591)
|.++...|++.+++.+.-+--...-+..+......|-.|.+.+.+..+.++-...+...-.-+...|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4555566666666554433322211122233344444455666666665555555543222222334444444332
Q ss_pred -cCCHHHHHHH
Q 048533 386 -IGDTASAMKV 395 (591)
Q Consensus 386 -~~~~~~a~~~ 395 (591)
.|.+++|.++
T Consensus 170 PLG~~~eAeel 180 (309)
T PF07163_consen 170 PLGHFSEAEEL 180 (309)
T ss_pred ccccHHHHHHH
Confidence 3444444443
No 394
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=68.79 E-value=60 Score=30.22 Aligned_cols=24 Identities=13% Similarity=0.030 Sum_probs=11.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 048533 170 VLLNSLAKDRLTDMVWKVYKKMVQ 193 (591)
Q Consensus 170 ~ll~~~~~~~~~~~a~~~~~~~~~ 193 (591)
.|..+..+.|+..+|.+.|+++.+
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhh
Confidence 333334445555555555555443
No 395
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=68.75 E-value=40 Score=26.38 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=29.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 462 LLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGN 507 (591)
Q Consensus 462 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 507 (591)
..+-+..+...++.|++.+....+++|.+.+++..|.++|+-+..+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444445555566667777777777777777777777777666653
No 396
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=68.21 E-value=25 Score=22.14 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=20.9
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 523 YWRAGEPKACSDILDDMYRRRLMITLKIYRSFSA 556 (591)
Q Consensus 523 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 556 (591)
..+.|-..++..++++|.+.|+..++..|..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666666666666666666666666665554
No 397
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=67.32 E-value=35 Score=22.93 Aligned_cols=58 Identities=12% Similarity=0.097 Sum_probs=39.7
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHH
Q 048533 84 MIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVF 153 (591)
Q Consensus 84 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 153 (591)
-+..+...|+|=+|-+++|.+-.....+....+..++++ .......+.|+...|..++
T Consensus 5 ~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~------------A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 5 EGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQL------------AVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHH------------HHHHHHHHCTSHHHHHHHH
T ss_pred HHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHH------------HHHHHHHHhCCHHHHHHhC
Confidence 345677899999999999999875544466666666653 2333456788888888764
No 398
>PHA02875 ankyrin repeat protein; Provisional
Probab=66.45 E-value=1.4e+02 Score=29.57 Aligned_cols=210 Identities=15% Similarity=0.102 Sum_probs=93.5
Q ss_pred hcCChHHHHHHHHHHhhCCCccCHHh--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCChh
Q 048533 142 NLKMTQDGLQVFDQMRVHNLMPHLHA--CTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIH--LYNVLIHACCKSSDVD 217 (591)
Q Consensus 142 ~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~ 217 (591)
+.|+.+-+ +.+.+.|..|+... -...+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+
T Consensus 11 ~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~ 82 (413)
T PHA02875 11 LFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVK 82 (413)
T ss_pred HhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHH
Confidence 34555443 33344555544322 223344555666654 444455556544432 1122345566778877
Q ss_pred hHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHH
Q 048533 218 KVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTY--NSLIHGFCREGRMREARRLFRD 295 (591)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~ 295 (591)
.+..+++.-.......+..- .+.+...+..|+. ++++.+.+.|..|+.... ...+...+..|+.+-+..+++.
T Consensus 83 ~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ 157 (413)
T PHA02875 83 AVEELLDLGKFADDVFYKDG-MTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH 157 (413)
T ss_pred HHHHHHHcCCcccccccCCC-CCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 76665543221100011111 2233444555664 344555556665543211 1234445566776665555543
Q ss_pred hhc-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048533 296 IKG-ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVT---YNSILRKLCKEGRIRDANRLLNEMNEKKIAP 371 (591)
Q Consensus 296 ~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 371 (591)
-.. ...|..-.+.+. ..+..|+.+ +.+.+.+.|..++... ....+...+..|+.+ +.+.+.+.|..+
T Consensus 158 g~~~~~~d~~g~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~ 228 (413)
T PHA02875 158 KACLDIEDCCGCTPLI-IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADC 228 (413)
T ss_pred CCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCc
Confidence 221 111222222332 233455543 4444555665554322 123333334455543 444445566555
Q ss_pred Ch
Q 048533 372 DN 373 (591)
Q Consensus 372 ~~ 373 (591)
+.
T Consensus 229 n~ 230 (413)
T PHA02875 229 NI 230 (413)
T ss_pred ch
Confidence 53
No 399
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.15 E-value=1.6e+02 Score=30.08 Aligned_cols=132 Identities=11% Similarity=0.023 Sum_probs=65.7
Q ss_pred HcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh-------hCCC
Q 048533 89 TKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR-------VHNL 161 (591)
Q Consensus 89 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~ 161 (591)
...+.|++|...|.-......+. .+..+....|-..+.+..+..++..+|+.+-|..+.++.+ .-.+
T Consensus 249 ~hs~sYeqaq~~F~~av~~~d~n------~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F 322 (665)
T KOG2422|consen 249 EHSNSYEQAQRDFYLAVIVHDPN------NVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNF 322 (665)
T ss_pred ecchHHHHHHHHHHHHHhhcCCc------ceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccc
Confidence 34566777777776655532211 1111222334555667777888888888777666555533 2222
Q ss_pred ccC-------------HHhH---HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCChhhHHHHHH
Q 048533 162 MPH-------------LHAC---TVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACC-KSSDVDKVEKLLC 224 (591)
Q Consensus 162 ~~~-------------~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~ 224 (591)
.|. ..-| ..-+..+.+.|.+..|+++.+-+.+..+.-|+.....+|+.|+ +..+++-.+++++
T Consensus 323 ~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~ 402 (665)
T KOG2422|consen 323 IPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSN 402 (665)
T ss_pred ccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 111 1111 1223344455555555555555555544444444444454443 3344444444444
Q ss_pred HH
Q 048533 225 EM 226 (591)
Q Consensus 225 ~~ 226 (591)
..
T Consensus 403 ~~ 404 (665)
T KOG2422|consen 403 EP 404 (665)
T ss_pred HH
Confidence 44
No 400
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.51 E-value=1.9e+02 Score=30.75 Aligned_cols=153 Identities=8% Similarity=0.083 Sum_probs=89.0
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCc-cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 048533 137 VIFYANLKMTQDGLQVFDQMRVHNLM-PHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSD 215 (591)
Q Consensus 137 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 215 (591)
++-+.+.+.+++|++.-......-.. .-.......+..+...|+++.|-...-.|... +..-|..-+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 34456678888998876655433111 02346777888888899999998888888763 66677777777777776
Q ss_pred hhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHH---------CCCC-------CCHHHHHHHHHH
Q 048533 216 VDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMER---------EGIS-------PDIVTYNSLIHG 279 (591)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---------~~~~-------p~~~~~~~l~~~ 279 (591)
...... -++......+...|..++..+.. .+...-.++..+... ...+ -+...--.|+..
T Consensus 439 l~~Ia~---~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~L 514 (846)
T KOG2066|consen 439 LTDIAP---YLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHL 514 (846)
T ss_pred cchhhc---cCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHH
Confidence 554333 33433323466678777777666 222221111111000 0000 011222336677
Q ss_pred HHhcCCHHHHHHHHHHhh
Q 048533 280 FCREGRMREARRLFRDIK 297 (591)
Q Consensus 280 ~~~~g~~~~A~~~~~~~~ 297 (591)
|...+++..|.+++-...
T Consensus 515 Yl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 515 YLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHccChHHHHHHHHhcc
Confidence 777778888877776665
No 401
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=65.31 E-value=1.2e+02 Score=28.19 Aligned_cols=218 Identities=13% Similarity=0.116 Sum_probs=97.0
Q ss_pred HCCCCCCHHHHHHHHH-HHHhcCC-HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 048533 331 AKGVYPGVVTYNSILR-KLCKEGR-IRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQ 408 (591)
Q Consensus 331 ~~~~~p~~~~~~~ll~-~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 408 (591)
..|.. +...++.+.. .+.+.|- ..=|.++|+..+.. ...+.++..+.+.+--+...++ ++|+.
T Consensus 159 ~nGt~-~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~E------k~i~~lis~Lrkg~md~rLmef--------fPpnk 223 (412)
T KOG2297|consen 159 SNGTL-PATVLQSLLNDNLVKEGIALSFAVKLFKEWLVE------KDINDLISSLRKGKMDDRLMEF--------FPPNK 223 (412)
T ss_pred hCCCC-CHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhh------ccHHHHHHHHHhcChHhHHHHh--------cCCcc
Confidence 34543 4444444443 2333332 23355666665432 1244555555443333333332 25666
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHH
Q 048533 409 FTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVS----VYRAL 484 (591)
Q Consensus 409 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l 484 (591)
.+-......+...|--+-....-.++.. | .....-..|..-..+...+++.....++-.+..--|++. +|..+
T Consensus 224 rs~E~Fak~Ft~agL~elvey~~~q~~~-~--a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~i 300 (412)
T KOG2297|consen 224 RSVEHFAKYFTDAGLKELVEYHRNQQSE-G--ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGI 300 (412)
T ss_pred hhHHHHHHHHhHhhHHHHHHHHHHHHHH-H--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhh
Confidence 6655555555555432222211111110 0 011112223333344455666666665544444345654 45555
Q ss_pred HHHHHhcCCHHHHHHHH-HHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHhhhc
Q 048533 485 IRRFCKKEKVDYAQRLF-NLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLK---IYRSFSASYAK 560 (591)
Q Consensus 485 ~~~~~~~g~~~~a~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~ 560 (591)
+++ +.|.+-.++. ++..+ ...+|..|+.+++..|+.+-.+- -+....... +.. .+..++..+-+
T Consensus 301 Msa----veWnKkeelva~qalr-----hlK~yaPLL~af~s~g~sEL~Ll--~KvQe~CYe-n~~fMKaFqkiV~lfYk 368 (412)
T KOG2297|consen 301 MSA----VEWNKKEELVAEQALR-----HLKQYAPLLAAFCSQGQSELELL--LKVQEYCYE-NIHFMKAFQKIVVLFYK 368 (412)
T ss_pred hHH----HhhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCChHHHHHH--HHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 443 3343322222 22222 24458888888888887665432 222222111 222 34455555555
Q ss_pred chhHHHHHHHHHHhcCCC
Q 048533 561 DNEILDLFWSHVVDRGLM 578 (591)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~ 578 (591)
..-+.+..--+|-.+|.+
T Consensus 369 ~dVLsEe~IL~Wyk~gh~ 386 (412)
T KOG2297|consen 369 ADVLSEETILKWYKEGHV 386 (412)
T ss_pred HHhhhhHHHHHHHHhccc
Confidence 555444444445555555
No 402
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=64.95 E-value=1.2e+02 Score=28.06 Aligned_cols=71 Identities=10% Similarity=-0.018 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-----CCCCCHHHH
Q 048533 480 VYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRR-----RLMITLKIY 551 (591)
Q Consensus 480 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~ 551 (591)
+++.....|..+|.+.+|.++.++....+ +.+...|..++..+...|+--+|.+-++++.+. |+..|...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 34555667888999999999999988763 446678888999999999988888888777542 666555443
No 403
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=64.48 E-value=21 Score=26.46 Aligned_cols=53 Identities=11% Similarity=-0.007 Sum_probs=35.3
Q ss_pred CCChhHHHHHHHHHhhhCCCC-CCC-----HHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 048533 54 CHIPSLSCAFFKWAESAVPNY-KHS-----LQSHWTMIHILTKNKHFKSAQNMLEKIAL 106 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~p~~-~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 106 (591)
.+++..|++.+.......... ... ..+...++......|++++|.+.+++...
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 488898866655554321110 001 23344678888999999999999999876
No 404
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=61.85 E-value=2.2e+02 Score=30.16 Aligned_cols=60 Identities=13% Similarity=0.153 Sum_probs=36.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCC-------hhHHHHHHHHHHHCCC
Q 048533 136 LVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRL-------TDMVWKVYKKMVQLGV 196 (591)
Q Consensus 136 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~ 196 (591)
++=.+.|+|.+++|.++....... .......+...+..+....+ -++...-|+...+...
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 344567999999999999555443 23344567777787776432 2345566666665543
No 405
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=61.74 E-value=53 Score=25.23 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=10.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 048533 484 LIRRFCKKEKVDYAQRLFNLM 504 (591)
Q Consensus 484 l~~~~~~~g~~~~a~~~~~~~ 504 (591)
++.-|...|+.++|...++++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344455556666666655554
No 406
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=61.73 E-value=62 Score=23.79 Aligned_cols=30 Identities=17% Similarity=0.089 Sum_probs=12.3
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 165 LHACTVLLNSLAKDRLTDMVWKVYKKMVQL 194 (591)
Q Consensus 165 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 194 (591)
...-..+...+...|+++.|++.+-.+++.
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 333344444444444444444444444433
No 407
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=61.41 E-value=33 Score=32.04 Aligned_cols=94 Identities=15% Similarity=-0.009 Sum_probs=63.7
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCcc
Q 048533 84 MIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMP 163 (591)
Q Consensus 84 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 163 (591)
=+.-|.+..+|..|...|.+.++... .+++.+..+|+.-+.+-.-.|++..|+.=....+..++.
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc--------------~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~- 151 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKC--------------ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT- 151 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcC--------------CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-
Confidence 46667788888888888877766542 244556667777777777778888888877777777654
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048533 164 HLHACTVLLNSLAKDRLTDMVWKVYKKMV 192 (591)
Q Consensus 164 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 192 (591)
...+|-.-..++.....+..|.+..++..
T Consensus 152 h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 152 HLKAYIRGAKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 45555555566666666666666666553
No 408
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.40 E-value=1.2e+02 Score=27.13 Aligned_cols=107 Identities=10% Similarity=-0.084 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHc--------CCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHH
Q 048533 79 QSHWTMIHILTKNKHFKSAQNMLEKIALR--------DFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGL 150 (591)
Q Consensus 79 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 150 (591)
.+...-+.-+.+.|+|.+|..-|+.+... .|.....+-.. ......+....+++...|++-+++
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLd--------k~~tpLllNy~QC~L~~~e~yevl 250 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELD--------KMITPLLLNYCQCLLKKEEYYEVL 250 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHH--------HhhhHHHHhHHHHHhhHHHHHHHH
Confidence 33445677788999999999988876541 11111110000 001123333444555556666666
Q ss_pred HHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 151 QVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQL 194 (591)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 194 (591)
+.-..++...+. |+.+|-.-..+.+..=+.++|..-|...++.
T Consensus 251 eh~seiL~~~~~-nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 251 EHCSEILRHHPG-NVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHHhcCCc-hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 666666665544 5555555555555555555566656555554
No 409
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=60.51 E-value=73 Score=24.46 Aligned_cols=62 Identities=10% Similarity=0.038 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHCCC
Q 048533 481 YRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAG--EPKACSDILDDMYRRRL 544 (591)
Q Consensus 481 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~ 544 (591)
...++.-|...+++++|.+.+.++.... -.......++..+...+ .-+-...++..+.+.+.
T Consensus 5 i~~~l~ey~~~~D~~ea~~~l~~L~~~~--~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~ 68 (113)
T smart00544 5 IFLIIEEYLSSGDTDEAVHCLLELKLPE--QHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANV 68 (113)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCCc--chHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCC
Confidence 3456667778888888888887775321 12233444444444442 23334455555555543
No 410
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=59.71 E-value=30 Score=23.25 Aligned_cols=45 Identities=9% Similarity=0.242 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 495 DYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 495 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
+...++++.++.. .-|..-.-.++.+|...|++++|.++++++.+
T Consensus 7 ~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 7 EELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444444331 11333334566666677777777766666654
No 411
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.48 E-value=2.5e+02 Score=30.00 Aligned_cols=73 Identities=11% Similarity=-0.014 Sum_probs=40.1
Q ss_pred HHHHHccCChhhHHHHHHHHhhCCCCc---CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048533 207 IHACCKSSDVDKVEKLLCEMEFKDVRA---DLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCRE 283 (591)
Q Consensus 207 l~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 283 (591)
++-+.+.+.+++|+...+..... .+ -...+...|..+...|++++|-...-.|... +..-|-..+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 34445566667776666555432 22 2234556666666777777776666666543 344444444444444
Q ss_pred CC
Q 048533 284 GR 285 (591)
Q Consensus 284 g~ 285 (591)
++
T Consensus 437 ~~ 438 (846)
T KOG2066|consen 437 DQ 438 (846)
T ss_pred cc
Confidence 44
No 412
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=59.41 E-value=1.6e+02 Score=27.82 Aligned_cols=20 Identities=5% Similarity=0.092 Sum_probs=9.3
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 048533 487 RFCKKEKVDYAQRLFNLMQG 506 (591)
Q Consensus 487 ~~~~~g~~~~a~~~~~~~~~ 506 (591)
++...|+..++.+.++...+
T Consensus 124 ~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 124 LKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHhcccHHHHHHHHHHHHH
Confidence 33444455555554444443
No 413
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.85 E-value=1.8e+02 Score=28.27 Aligned_cols=94 Identities=11% Similarity=0.037 Sum_probs=51.7
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHhhCC--CCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC---------CCCCCH
Q 048533 202 LYNVLIHACCKSSDVDKVEKLLCEMEFKD--VRADLFTYNTLIALYCKKGMHYEALAVQDRMERE---------GISPDI 270 (591)
Q Consensus 202 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------~~~p~~ 270 (591)
.+..+...|..+|+++.|.+.|.+....- .+..+..|..+|..-.-.|+|........+..+. .+++..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 44556666667777777777766643220 1122334555555555666666666555555443 133344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048533 271 VTYNSLIHGFCREGRMREARRLFRDIK 297 (591)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 297 (591)
.++..+..... ++++.|.+.|-...
T Consensus 232 ~C~agLa~L~l--kkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 232 KCAAGLANLLL--KKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHhCC
Confidence 55555555444 37777777776554
No 414
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=58.41 E-value=27 Score=34.28 Aligned_cols=108 Identities=13% Similarity=-0.047 Sum_probs=72.6
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCcc
Q 048533 84 MIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMP 163 (591)
Q Consensus 84 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 163 (591)
-+..+...+.|+.|+.++.++++.++. ....+..-..++.+.+++..|+.=+..+++..+.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpn------------------ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~- 70 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPN------------------CAIYFANRALAHLKVESFGGALHDALKAIELDPT- 70 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCc------------------ceeeechhhhhheeechhhhHHHHHHhhhhcCch-
Confidence 345566778899999999999886532 2223333446788888999998888888887643
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 048533 164 HLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCK 212 (591)
Q Consensus 164 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 212 (591)
....|..-..++.+.+.+.+|+..|+..... .|+..-....+.-|-+
T Consensus 71 ~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 71 YIKAYVRRGTAVMALGEFKKALLDLEKVKKL--APNDPDATRKIDECNK 117 (476)
T ss_pred hhheeeeccHHHHhHHHHHHHHHHHHHhhhc--CcCcHHHHHHHHHHHH
Confidence 3444555555666667777788877777664 5666666666655443
No 415
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=58.39 E-value=1.3e+02 Score=26.53 Aligned_cols=66 Identities=8% Similarity=0.028 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcCCH-------HHHHHHHHHHHhCCCCc-----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 048533 480 VYRALIRRFCKKEKV-------DYAQRLFNLMQGNGILG-----DSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLM 545 (591)
Q Consensus 480 ~~~~l~~~~~~~g~~-------~~a~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 545 (591)
.+..+.+.|...|+. ..|.+.|.+..+..-.| +..+.-.+.....+.|++++|.+.|.++...+-.
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 444455555555653 34445555554432111 1234445677778899999999999999887543
No 416
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=58.23 E-value=1.1e+02 Score=26.76 Aligned_cols=77 Identities=12% Similarity=0.232 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhH-HHHHHHHHHHCCCCCCHHH
Q 048533 476 VDVSVYRALIRRFCKKE----KVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKA-CSDILDDMYRRRLMITLKI 550 (591)
Q Consensus 476 ~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~ 550 (591)
-+..|...||..+-+.. .+.+-..+|+.+.+ |..+..-|-+.+.-.- --++-+.+...|...++..
T Consensus 91 Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~---------Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~ 161 (221)
T KOG0037|consen 91 FSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQ---------WRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQF 161 (221)
T ss_pred CCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHH---------HHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHH
Confidence 35666666776665433 34444555544433 5555555554332111 1233333444577777777
Q ss_pred HHHHHHhhhcc
Q 048533 551 YRSFSASYAKD 561 (591)
Q Consensus 551 ~~~li~~~~~~ 561 (591)
++.+++-|.+.
T Consensus 162 ~~~lv~kyd~~ 172 (221)
T KOG0037|consen 162 YNLLVRKYDRF 172 (221)
T ss_pred HHHHHHHhccc
Confidence 77777777765
No 417
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=58.00 E-value=1.7e+02 Score=27.56 Aligned_cols=176 Identities=8% Similarity=0.017 Sum_probs=88.7
Q ss_pred hHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHH
Q 048533 40 STAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNAL 119 (591)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (591)
+......+..++ .++++.+.++..+......|. =.+.++....++.+.| ++++.+.++.-...-.. .+..+
T Consensus 99 ~ad~~~~~~~~~-~~~~~~~Ll~~~E~sl~~~pf---WLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~----RlP~L 169 (301)
T TIGR03362 99 PADRVADYQELL-AQADWAALLQRVEQSLSLAPF---WLDGQRLSAQALERLG-YAAVAQAIRDELAAFLE----RLPGL 169 (301)
T ss_pred CHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCch---hhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH----hCcCh
Confidence 344445555555 346778888888887776554 5777788889999999 45555554433221000 00011
Q ss_pred Hhhc---CCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048533 120 VKIH---DDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGV 196 (591)
Q Consensus 120 ~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 196 (591)
..+. +.|--+..+..|+...-...+.-..+ .....+...+......-+..+...+.++.|+..++.......
T Consensus 170 ~~L~F~DGtPFad~~T~~WL~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~ 244 (301)
T TIGR03362 170 LELKFSDGTPFADDETRAWLAQHATRSNAASVA-----PVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAR 244 (301)
T ss_pred hhcccCCCCCCCCHHHHHHHHhccccccccccc-----ccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCC
Confidence 1111 11222334444444321110000000 000000001111122224666778888888888887443322
Q ss_pred CCCHHHH--HHHHHHHHccCChhhHHHHHHHHhhC
Q 048533 197 VANIHLY--NVLIHACCKSSDVDKVEKLLCEMEFK 229 (591)
Q Consensus 197 ~~~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~ 229 (591)
.|-...+ -.+.+.|...|..+-|..++..+.+.
T Consensus 245 s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 245 EPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2233333 33456778888888888888877654
No 418
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=57.85 E-value=29 Score=18.80 Aligned_cols=29 Identities=10% Similarity=0.047 Sum_probs=20.4
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHH
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIH 86 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~ 86 (591)
|+++.|..+|+.+....|. +...+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~---~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPK---SVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCC---ChHHHHHHHH
Confidence 4678888899998887765 6666555443
No 419
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=57.54 E-value=85 Score=28.50 Aligned_cols=87 Identities=18% Similarity=0.067 Sum_probs=54.1
Q ss_pred hHHHHHHHHHhhhCCCCC-CC--HHHHHHHHHHHHcCCCchHHHHHHHHHHHc-CCCCchHHHHHHHhhcCCCCCccchH
Q 048533 58 SLSCAFFKWAESAVPNYK-HS--LQSHWTMIHILTKNKHFKSAQNMLEKIALR-DFLSTPSVLNALVKIHDDPDGNSHVL 133 (591)
Q Consensus 58 ~~A~~~f~~~~~~~p~~~-~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (591)
...++++..+.+++.... .. ..+...++..|.+.|++++|.++|+.+... .-+.+..+.. .++
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~-------------~~l 221 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLT-------------EVL 221 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHH-------------HHH
Confidence 344555555554433211 12 233457899999999999999999998542 1122222222 345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHh
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
..+..++.+.|+.+..+.+--++.
T Consensus 222 ~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 222 WRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHh
Confidence 567778888888888877655543
No 420
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.29 E-value=59 Score=28.10 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=18.6
Q ss_pred CcCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 510 LGDSVIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 510 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
.|++.+|..++.++...|+.++|.+..+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555556666666666555555555
No 421
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=55.76 E-value=70 Score=26.14 Aligned_cols=50 Identities=8% Similarity=0.086 Sum_probs=26.4
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 048533 500 LFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKI 550 (591)
Q Consensus 500 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 550 (591)
+.+.+.+.|++++.. -..++..+...++.-.|.++++.+.+.+...+..|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 334444555554442 22455555555555666666666666655554443
No 422
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=55.74 E-value=32 Score=22.24 Aligned_cols=29 Identities=7% Similarity=-0.023 Sum_probs=21.2
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCC
Q 048533 81 HWTMIHILTKNKHFKSAQNMLEKIALRDF 109 (591)
Q Consensus 81 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 109 (591)
.+.++.++.+.|++++|.+..+.+.+..|
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP 32 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEP 32 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 34567777888888888888888887654
No 423
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=55.65 E-value=81 Score=23.29 Aligned_cols=54 Identities=13% Similarity=0.015 Sum_probs=31.9
Q ss_pred HhcCCHHHHHHHHHHHHh----CCCCc----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 489 CKKEKVDYAQRLFNLMQG----NGILG----DSVIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 489 ~~~g~~~~a~~~~~~~~~----~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
.+.|++..|.+.+.+..+ .+... -....-.+.......|++++|...+++.++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456777777555554443 22111 0122334556677788888888888888764
No 424
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=55.38 E-value=84 Score=26.69 Aligned_cols=48 Identities=10% Similarity=0.120 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHhhCCCccC--HHh-----HHHHHHHHHhcCChhHHHHHHHHHHH
Q 048533 146 TQDGLQVFDQMRVHNLMPH--LHA-----CTVLLNSLAKDRLTDMVWKVYKKMVQ 193 (591)
Q Consensus 146 ~~~A~~~~~~~~~~~~~~~--~~~-----~~~ll~~~~~~~~~~~a~~~~~~~~~ 193 (591)
++.|+.+|+.+.+....|. ... -...+-.|.+.|.+++|.+++++..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 3567777777766543331 011 12223345556666666666665554
No 425
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.17 E-value=1e+02 Score=24.37 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhCCCCcC-HHHHHHHHHHHHHcCChhHHHHHHHHH
Q 048533 496 YAQRLFNLMQGNGILGD-SVIYTSLAYAYWRAGEPKACSDILDDM 539 (591)
Q Consensus 496 ~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 539 (591)
.+..+|+.|..+|+--. +..|......+...|++++|.++|+.-
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 77788888877655444 366777777888888888888887653
No 426
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.30 E-value=67 Score=27.74 Aligned_cols=34 Identities=12% Similarity=0.035 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 474 LCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGN 507 (591)
Q Consensus 474 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 507 (591)
..|++.+|..++..+...|+.++|.+..+++...
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567777777777788888888887777777763
No 427
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=53.86 E-value=26 Score=23.53 Aligned_cols=16 Identities=25% Similarity=0.484 Sum_probs=5.6
Q ss_pred HHHHhcCCHHHHHHHH
Q 048533 278 HGFCREGRMREARRLF 293 (591)
Q Consensus 278 ~~~~~~g~~~~A~~~~ 293 (591)
.++...|++++|.+++
T Consensus 31 ~gllqlg~~~~a~eYi 46 (62)
T PF14689_consen 31 YGLLQLGKYEEAKEYI 46 (62)
T ss_dssp HHHHHTT-HHHHHHHH
T ss_pred HHHHHCCCHHHHHHHH
Confidence 3333333333333333
No 428
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=53.75 E-value=2e+02 Score=27.22 Aligned_cols=52 Identities=13% Similarity=0.192 Sum_probs=26.5
Q ss_pred hcCChhHHHHHHHHHHHC---CCCCCHHHH--HHHHHHHHccCChhhHHHHHHHHhh
Q 048533 177 KDRLTDMVWKVYKKMVQL---GVVANIHLY--NVLIHACCKSSDVDKVEKLLCEMEF 228 (591)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~---~~~~~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~ 228 (591)
+.++.++|++.++++.+. .-.|+...| ....+++...|+...+.+.++...+
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 334555555555555432 112334333 3344555566666666666666655
No 429
>PRK10941 hypothetical protein; Provisional
Probab=53.71 E-value=1.8e+02 Score=26.75 Aligned_cols=60 Identities=10% Similarity=0.037 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 482 RALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 482 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
+.+-.+|.+.++++.|.++.+.+.... +.++.-+.--.-.|.+.|.+..|..=++..++.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 344445666666666666666666542 223444555555666666666666666666654
No 430
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=53.69 E-value=3e+02 Score=29.24 Aligned_cols=121 Identities=17% Similarity=0.141 Sum_probs=78.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048533 417 GFCKAKEMDIAKELLFGMLDAGFSPSYC--SYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKV 494 (591)
Q Consensus 417 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 494 (591)
++.--|+.++|..+.++|.... .|-.. -.-.+.-+|+..|+.....+++.-.+.- +.-|..-+..+.-++.-..++
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh
Confidence 3455677788888988888643 22211 1223456778888887777777666543 333454444455556677889
Q ss_pred HHHHHHHHHHHhCCCCcCHH--HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 495 DYAQRLFNLMQGNGILGDSV--IYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 495 ~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
+....+.+-+.+. ..|... +-..|.-+|...| ..+|+.+++-|..
T Consensus 588 ~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc
Confidence 9998888888775 455443 3344555666666 4788999998887
No 431
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=53.46 E-value=85 Score=22.84 Aligned_cols=34 Identities=9% Similarity=0.108 Sum_probs=15.1
Q ss_pred cCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCCh
Q 048533 213 SSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMH 251 (591)
Q Consensus 213 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 251 (591)
.|+.+.|.+++..+. +| ...|...+.++...|.-
T Consensus 49 ~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 49 HGNESGARELLKRIV-QK----EGWFSKFLQALRETEHH 82 (88)
T ss_pred cCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCch
Confidence 344455555555444 32 12344444444444443
No 432
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=53.09 E-value=2.1e+02 Score=27.25 Aligned_cols=119 Identities=12% Similarity=0.077 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHH
Q 048533 424 MDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCK---KEKVDYAQRL 500 (591)
Q Consensus 424 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~ 500 (591)
.+.-..+++++++.+ +.+......++..+.+..+.+...+-|+++....+. +...|...+..... .-.++....+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 345567777877764 355666777788888888888888888888887444 77788888776554 2346666666
Q ss_pred HHHHHhC------CC------CcC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 048533 501 FNLMQGN------GI------LGD-----SVIYTSLAYAYWRAGEPKACSDILDDMYRRRL 544 (591)
Q Consensus 501 ~~~~~~~------~~------~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 544 (591)
|.+..+. +. .++ ..++..+..-+..+|-.+.|..+++-+++..+
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 6655431 11 011 12333344445678999999999999999754
No 433
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=52.61 E-value=2e+02 Score=26.79 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 048533 460 EALLKLLDEFVSRGLCVDVSVYRALIRRFCK----KEKVDYAQRLFNLMQGNG 508 (591)
Q Consensus 460 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 508 (591)
..|...+.++...+ ++.....+...|.. ..+..+|...|++..+.|
T Consensus 172 ~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 172 KKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred HhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 35666666666654 34444444444432 236677777777777665
No 434
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=51.70 E-value=1.3e+02 Score=24.25 Aligned_cols=69 Identities=12% Similarity=0.066 Sum_probs=36.2
Q ss_pred CcccHHHHHHHHHhcCC---hhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 048533 234 DLFTYNTLIALYCKKGM---HYEALAVQDRMEREG-ISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPN 302 (591)
Q Consensus 234 ~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 302 (591)
+..+-..+..++.+..+ ..+.+.+++++.+.. ..-.......|.-++.+.++++.++++.+.+.+.+||
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 34444444455554433 344556666666521 1112333444555666777777777777766655544
No 435
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=50.12 E-value=2.1e+02 Score=26.36 Aligned_cols=206 Identities=14% Similarity=0.106 Sum_probs=108.9
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhC--
Q 048533 82 WTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVH-- 159 (591)
Q Consensus 82 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-- 159 (591)
..++.-..+.+++++|+..+.++...|...++...+ ..+.....+...|.+.|++..--+......+.
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~n----------EqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~ 76 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLN----------EQEATVLELFKLYVSKGDYCSLGDTITSSREAME 76 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhh----------HHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHH
Confidence 456677788999999999999999988776665443 23345677888899999887766555443321
Q ss_pred --CCccCHHhHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHccCChhhHHHHH----HHHh
Q 048533 160 --NLMPHLHACTVLLNSLAKD-RLTDMVWKVYKKMVQLGVVANI-----HLYNVLIHACCKSSDVDKVEKLL----CEME 227 (591)
Q Consensus 160 --~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~g~~~~a~~~~----~~~~ 227 (591)
.-+........++.-+... ..++..+.+.....+....-.. ..-..++..+.+.|++.+|+.+. .++.
T Consensus 77 ~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElK 156 (421)
T COG5159 77 DFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELK 156 (421)
T ss_pred HhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 1111233344444443332 3345555555544443222111 11234667777888888877654 3444
Q ss_pred hCCCCcCcccHHHH-HHHHHhcCChhHHHHHHHHHHHC----CCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHhh
Q 048533 228 FKDVRADLFTYNTL-IALYCKKGMHYEALAVQDRMERE----GISPDIVTYNSLIHGF--CREGRMREARRLFRDIK 297 (591)
Q Consensus 228 ~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~----~~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~ 297 (591)
+.+-+++..+...+ -.+|....+..++..-+-..+-. =++|-...-.-++++- |...++..|..+|-+..
T Consensus 157 k~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~ 233 (421)
T COG5159 157 KYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEAL 233 (421)
T ss_pred hhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHH
Confidence 44445554443332 12333444444433333222211 1233333333333332 33445666666665543
No 436
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.09 E-value=4.3e+02 Score=29.93 Aligned_cols=123 Identities=13% Similarity=0.077 Sum_probs=73.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 048533 238 YNTLIALYCKKGMHYEALAVQDRMEREGI--SPD-IVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYC 314 (591)
Q Consensus 238 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~ 314 (591)
|...++.+-+.+..+.+.++-...++.-. .|. ..+++.+.+.....|.+-+|.+.+-.......-..+...++-.++
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLf 1065 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLF 1065 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 56677777788888888887776665411 122 345677778888888888888776554332222345666777777
Q ss_pred hcCCHHHH------------HH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048533 315 RANDLEEA------------LR-LREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRL 360 (591)
Q Consensus 315 ~~g~~~~a------------~~-~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 360 (591)
.+|+++.. .. +++..-+.........|+.|-..+...+++.+|-.+
T Consensus 1066 ecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1066 ECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred hccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 77776533 23 233322222222334456666666677777766544
No 437
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=49.94 E-value=1.7e+02 Score=25.18 Aligned_cols=55 Identities=11% Similarity=0.172 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC--------------CCcCHHHHHHHHHHHHHcCChhHHHHHHH
Q 048533 483 ALIRRFCKKEKVDYAQRLFNLMQGNG--------------ILGDSVIYTSLAYAYWRAGEPKACSDILD 537 (591)
Q Consensus 483 ~l~~~~~~~g~~~~a~~~~~~~~~~~--------------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 537 (591)
+++..|-+..+|.+++++++.|.+.. ..+.-.+.+.....+.+.|..+.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 45566777788888888888877531 23344567788888899999999988877
No 438
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=49.89 E-value=1.4e+02 Score=24.33 Aligned_cols=50 Identities=14% Similarity=0.230 Sum_probs=30.3
Q ss_pred CcccHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048533 234 DLFTYNTLIALYCKKGM-HYEALAVQDRMEREGISPDIVTYNSLIHGFCRE 283 (591)
Q Consensus 234 ~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 283 (591)
+...|+.++.+.....- --.+..+|.-|++.+.+++..-|..++.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 44566666666644444 234556666666666667777777777666544
No 439
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=49.71 E-value=2.6e+02 Score=27.38 Aligned_cols=55 Identities=22% Similarity=0.206 Sum_probs=35.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHHC
Q 048533 382 AYCKIGDTASAMKVKNRMLEAGLMLDQF--TYKALIHGFC--KAKEMDIAKELLFGMLDA 437 (591)
Q Consensus 382 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 437 (591)
...+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445778888888888888776 444443 3444444443 466777888888777653
No 440
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=49.15 E-value=2e+02 Score=25.75 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=34.3
Q ss_pred HHhcCChHHHHHHHHHHhhC-C-----------CccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 048533 140 YANLKMTQDGLQVFDQMRVH-N-----------LMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVA 198 (591)
Q Consensus 140 ~~~~~~~~~A~~~~~~~~~~-~-----------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 198 (591)
+...|+..+|+..++.-... | -.|.......++..|. .+++++|.+++..+-+.|+.|
T Consensus 202 fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 202 FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCH
Confidence 66788888888877665432 1 1234444444544443 345666666666666666654
No 441
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=49.09 E-value=1.1e+02 Score=28.30 Aligned_cols=57 Identities=18% Similarity=0.385 Sum_probs=39.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 428 KELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFC 489 (591)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 489 (591)
.++++.+.+.++.|...++..+.-.+.+.=.+..++.+|+.+.. |+.-|..|+..|+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHH
Confidence 35677777777788877777777777777777788888887775 3333555665554
No 442
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=48.78 E-value=88 Score=23.97 Aligned_cols=68 Identities=18% Similarity=0.301 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcc-hhHHH---HHHHHHHhcCCCChHHHHHH
Q 048533 517 TSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKD-NEILD---LFWSHVVDRGLMSKHIFKEM 586 (591)
Q Consensus 517 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~ 586 (591)
..++.-|...|+.++|...+.++.-... -......++...... ....+ .+..++++.|.++.+.|++-
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~~--~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~g 77 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPSQ--HHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEG 77 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GGG--HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCcc--HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 4566677888999999998888643321 122333444444444 33333 45677788999988877653
No 443
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=48.43 E-value=1.7e+02 Score=24.92 Aligned_cols=73 Identities=15% Similarity=0.159 Sum_probs=41.4
Q ss_pred chHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHH
Q 048533 94 FKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLN 173 (591)
Q Consensus 94 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 173 (591)
++.|+.+++.+.+.... +..+.+..-.+ +--..+..|.+.|.+++|.+++++..+. |+......-+.
T Consensus 85 LESAl~v~~~I~~E~~~-~~~lhe~i~~l---------ik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~ 151 (200)
T cd00280 85 LESALMVLESIEKEFSL-PETLHEEIRKL---------IKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLL 151 (200)
T ss_pred HHHHHHHHHHHHHhcCC-cHHHHHHHHHH---------HHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHH
Confidence 35577777777664332 11222211111 1223566799999999999999999884 33333344444
Q ss_pred HHHhcC
Q 048533 174 SLAKDR 179 (591)
Q Consensus 174 ~~~~~~ 179 (591)
...+.+
T Consensus 152 ~II~~K 157 (200)
T cd00280 152 MIIREK 157 (200)
T ss_pred HHHHcc
Confidence 444433
No 444
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=47.93 E-value=68 Score=20.13 Aligned_cols=32 Identities=9% Similarity=0.162 Sum_probs=16.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 048533 489 CKKEKVDYAQRLFNLMQGNGILGDSVIYTSLA 520 (591)
Q Consensus 489 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 520 (591)
.+.|-..++..++++|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555555555555555555555554443
No 445
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=47.81 E-value=1.4e+02 Score=26.82 Aligned_cols=92 Identities=9% Similarity=-0.065 Sum_probs=66.8
Q ss_pred cCCCChhHHHHHHHHHhh--------hCCCCCC-------CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHH
Q 048533 52 NCCHIPSLSCAFFKWAES--------AVPNYKH-------SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVL 116 (591)
Q Consensus 52 ~~~~~~~~A~~~f~~~~~--------~~p~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 116 (591)
.+.|++.+|...|+.|+. ..|..+. ....+.+..+.+...|.+-++++-..+++...
T Consensus 189 fk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~-------- 260 (329)
T KOG0545|consen 189 FKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH-------- 260 (329)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC--------
Confidence 355889999998888863 2343111 11234566777888899999999988888765
Q ss_pred HHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 117 NALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
+.+..+|..-+.+.+..-+.++|..=|...++.++
T Consensus 261 ----------~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 261 ----------PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred ----------CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 55666677777788888899999999999888754
No 446
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=47.46 E-value=1.1e+02 Score=22.32 Aligned_cols=66 Identities=9% Similarity=0.077 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhH
Q 048533 148 DGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKV 219 (591)
Q Consensus 148 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 219 (591)
.+.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. +|. ..|...+.++...|.-+-|
T Consensus 20 ~~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 20 KTRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHELA 85 (88)
T ss_pred hHHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchhhh
Confidence 445566666666543 33333333332234566666666666666 432 2455556665555554433
No 447
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=46.93 E-value=1.6e+02 Score=24.05 Aligned_cols=78 Identities=5% Similarity=0.141 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcC-------CCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048533 273 YNSLIHGFCREGRMREARRLFRDIKGA-------TPNHVTYTTLIDGYCRAND-LEEALRLREVMAAKGVYPGVVTYNSI 344 (591)
Q Consensus 273 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~l 344 (591)
.+.++.-....+.+.....+++.+.-. ..+...|..++.+.....- ---+..+|+-+++.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 355555555556666666666555321 2233445555555544333 22334455555555555555556666
Q ss_pred HHHHHh
Q 048533 345 LRKLCK 350 (591)
Q Consensus 345 l~~~~~ 350 (591)
+.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 555443
No 448
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=46.87 E-value=2.2e+02 Score=25.65 Aligned_cols=61 Identities=13% Similarity=0.122 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHh-cCChhHHHHHHHHHHH
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAK-DRLTDMVWKVYKKMVQ 193 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~ 193 (591)
+..++..+-+.+++++.+..+.++...+...+..--+.+..+|-. -|....+++++..+.+
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 345677788899999999999999998877777777766666643 2334445555555443
No 449
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=46.04 E-value=2.5e+02 Score=26.09 Aligned_cols=84 Identities=13% Similarity=0.058 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 048533 388 DTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAK-------EMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCN----K 456 (591)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 456 (591)
|..+|...|+++.+.|..+...+...+...|.... +...|...+.++-..+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 45555555555555543221122223333332220 2235666666666655 33333344434432 3
Q ss_pred CCHHHHHHHHHHHHHCCC
Q 048533 457 NNEEALLKLLDEFVSRGL 474 (591)
Q Consensus 457 g~~~~a~~~~~~~~~~~~ 474 (591)
.+..+|...|....+.|.
T Consensus 205 ~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred cCHHHHHHHHHHHHHCCC
Confidence 367777777777777654
No 450
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=45.69 E-value=2.3e+02 Score=25.53 Aligned_cols=56 Identities=13% Similarity=0.045 Sum_probs=26.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHH
Q 048533 309 LIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCK-EGRIRDANRLLNEM 364 (591)
Q Consensus 309 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~ 364 (591)
++..+-..|+++++...++++...+...+..-.+.+-.+|-. .|....+++++..+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 444555566666666666666665555555555544444421 23334444444433
No 451
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=45.49 E-value=40 Score=30.99 Aligned_cols=54 Identities=13% Similarity=-0.035 Sum_probs=33.1
Q ss_pred CCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC
Q 048533 54 CHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFL 110 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 110 (591)
.|+.++|..+|+.+....|. .+.+...++...-..++.-+|-++|-++..-.+.
T Consensus 129 ~Gk~ekA~~lfeHAlalaP~---~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALALAPT---NPQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred ccchHHHHHHHHHHHhcCCC---CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 36667777777777666655 5556566666555556666666666555554433
No 452
>PRK10941 hypothetical protein; Provisional
Probab=45.35 E-value=2.5e+02 Score=25.89 Aligned_cols=58 Identities=10% Similarity=-0.025 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 448 WLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQG 506 (591)
Q Consensus 448 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 506 (591)
.+-.+|.+.++++.|+++.+.+....+. ++.-+.--+-.|.+.|.+..|..=++..++
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3344555666666666666666655433 445555555556666666666665555554
No 453
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=44.87 E-value=1.2e+02 Score=23.20 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048533 306 YTTLIDGYCRANDLEEALRLREVMAA 331 (591)
Q Consensus 306 ~~~li~~~~~~g~~~~a~~~~~~~~~ 331 (591)
|..++..|...|.+++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 45555555555555555555555544
No 454
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=44.70 E-value=2.7e+02 Score=26.02 Aligned_cols=152 Identities=12% Similarity=0.129 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048533 321 EALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRML 400 (591)
Q Consensus 321 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 400 (591)
-|.++|+.-... ...+.++..+.+.+.-+.-.++ .+|+..+-......+...|--+-..-.-.++.
T Consensus 185 F~~~lFk~~~~E------k~i~~lis~Lrkg~md~rLmef--------fPpnkrs~E~Fak~Ft~agL~elvey~~~q~~ 250 (412)
T KOG2297|consen 185 FAVKLFKEWLVE------KDINDLISSLRKGKMDDRLMEF--------FPPNKRSVEHFAKYFTDAGLKELVEYHRNQQS 250 (412)
T ss_pred HHHHHHHHHHhh------ccHHHHHHHHHhcChHhHHHHh--------cCCcchhHHHHHHHHhHhhHHHHHHHHHHHHH
Confidence 344555554432 1234555555544443333333 47888887777777776663322211111111
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCC
Q 048533 401 EAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYC----SYSWLVDGYCNKNNEEALLKLL-DEFVSRGLC 475 (591)
Q Consensus 401 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~ 475 (591)
.. .-...-..|..-..+...+++......+-.+..--|++. +|+.++++ +.+..-.++. +++++
T Consensus 251 ~~---a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsa----veWnKkeelva~qalr---- 319 (412)
T KOG2297|consen 251 EG---ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSA----VEWNKKEELVAEQALR---- 319 (412)
T ss_pred HH---HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHH----HhhchHHHHHHHHHHH----
Confidence 00 011222334444455666777766665544433346654 35555544 3333222222 22222
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHH
Q 048533 476 VDVSVYRALIRRFCKKEKVDYAQ 498 (591)
Q Consensus 476 ~~~~~~~~l~~~~~~~g~~~~a~ 498 (591)
....|..|+.+++..|+.+-.+
T Consensus 320 -hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 320 -HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred -HHHhhhHHHHHHhcCChHHHHH
Confidence 3456889999999999887544
No 455
>PRK13342 recombination factor protein RarA; Reviewed
Probab=44.53 E-value=3.3e+02 Score=27.07 Aligned_cols=74 Identities=19% Similarity=0.048 Sum_probs=33.7
Q ss_pred CCCchHHHHHHHHHHHcCCCCchHHHHHHHhhc-CCCCCccchHHHHHHHHHh---cCChHHHHHHHHHHhhCCCccC
Q 048533 91 NKHFKSAQNMLEKIALRDFLSTPSVLNALVKIH-DDPDGNSHVLSWLVIFYAN---LKMTQDGLQVFDQMRVHNLMPH 164 (591)
Q Consensus 91 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~ 164 (591)
.|+..++..+++.+...+...+...+..++... ...+...+....+++++.+ .++++.|+.++.+|++.|..|.
T Consensus 187 ~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 187 NGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHH
Confidence 677777777777664432222333333333211 1111122233334444333 2555556666666665554443
No 456
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.00 E-value=4.6e+02 Score=28.59 Aligned_cols=44 Identities=14% Similarity=0.208 Sum_probs=22.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 311 DGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNE 363 (591)
Q Consensus 311 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 363 (591)
..+...|+.+.+..+-..+.. |..++..+.+.+.+++|++++..
T Consensus 512 ~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 512 QLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555444333322 44555556666666666666543
No 457
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=43.88 E-value=3.3e+02 Score=26.93 Aligned_cols=372 Identities=13% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCK 212 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 212 (591)
.+-...-|...|+..+|.+..+++.. +..-...+-+++...+.-..|....-.+.+.+...+...-..+.+++.+
T Consensus 217 In~~l~eyv~~getrea~rciR~L~v-----sffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr 291 (645)
T KOG0403|consen 217 INGNLIEYVEIGETREACRCIRELGV-----SFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSR 291 (645)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhCC-----CchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchh
Q ss_pred cC--------ChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048533 213 SS--------DVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREG 284 (591)
Q Consensus 213 ~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 284 (591)
.+ +...|...|+.+..+.+.-+...-+.+-..-...|+.+. .+.|++=... +|+-|...|
T Consensus 292 ~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~-~r~Fkk~~~~-----------IIqEYFlsg 359 (645)
T KOG0403|consen 292 KGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSEN-LRAFKKDLTP-----------IIQEYFLSG 359 (645)
T ss_pred hccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchH-HHHHHHhhHH-----------HHHHHHhcC
Q ss_pred CHHHHHHHHHHhhcCCCChhhHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----HHHHHH
Q 048533 285 RMREARRLFRDIKGATPNHVTYTTLI-DGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGR----IRDANR 359 (591)
Q Consensus 285 ~~~~A~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~----~~~a~~ 359 (591)
+..+..+.++.+--.+-+......+| -++-+.+...+.-.+|-.-.-..+-++...-+.+...+-...+ ...|-+
T Consensus 360 Dt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD~p~a~~ 439 (645)
T KOG0403|consen 360 DTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALDIPRASQ 439 (645)
T ss_pred ChHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhccccccHH
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHHcCCHH-HHHHHHHHHHHC-----------------CCCCCHHH----HHHHHHH
Q 048533 360 LLNEMNEKKIAPDNVTCNTLINAYCKIGDTA-SAMKVKNRMLEA-----------------GLMLDQFT----YKALIHG 417 (591)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~~~~~-----------------~~~~~~~~----~~~l~~~ 417 (591)
.+...+.+.+. |......-+.-+...-... .+.+..+.+... |....... ...|+.-
T Consensus 440 elalFlARAVi-DdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLeE 518 (645)
T KOG0403|consen 440 ELALFLARAVI-DDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLEE 518 (645)
T ss_pred HHHHHHHHHHh-hcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHHHHHH
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----
Q 048533 418 FCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKE----- 492 (591)
Q Consensus 418 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 492 (591)
|...|+..+|.+.++++ ..-+-.....+.+++.+.-+.|+-...+.+++..-+. ...|.+.+-.+|.+-.
T Consensus 519 Y~~~GdisEA~~CikeL-gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s----glIT~nQMtkGf~RV~dsl~D 593 (645)
T KOG0403|consen 519 YELSGDISEACHCIKEL-GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS----GLITTNQMTKGFERVYDSLPD 593 (645)
T ss_pred HHhccchHHHHHHHHHh-CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CceeHHHhhhhhhhhhccCcc
Q ss_pred ---CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCC
Q 048533 493 ---KVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGE 528 (591)
Q Consensus 493 ---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 528 (591)
++..|.+.|+...+.+.. +..+|..+...|-..++
T Consensus 594 lsLDvPna~ekf~~~Ve~~~~-~G~i~~~l~~~~~s~l~ 631 (645)
T KOG0403|consen 594 LSLDVPNAYEKFERYVEECFQ-NGIISKQLRDLCPSRLR 631 (645)
T ss_pred cccCCCcHHHHHHHHHHHHHH-cCchhHHhhhcchhhhc
No 458
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=43.84 E-value=2.6e+02 Score=25.64 Aligned_cols=85 Identities=15% Similarity=0.086 Sum_probs=37.5
Q ss_pred HHHhcCCHHHHHHHH----HHHHhCCCCCChHHHHHHHHHHHHcCCHH-HHHHHHHHHHH---CC--CCCCHHHHHHHHH
Q 048533 347 KLCKEGRIRDANRLL----NEMNEKKIAPDNVTCNTLINAYCKIGDTA-SAMKVKNRMLE---AG--LMLDQFTYKALIH 416 (591)
Q Consensus 347 ~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~~~~---~~--~~~~~~~~~~l~~ 416 (591)
.+.+.|+...|-++. +...+.+.+++......++..+...+.-+ .-..+.+.+.+ .+ ..-|+.....+..
T Consensus 19 ~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~ 98 (260)
T PF04190_consen 19 ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAE 98 (260)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHH
Confidence 355667665554443 33344556666666566666655544322 22333333322 11 1124455555666
Q ss_pred HHHhcCCHHHHHHHH
Q 048533 417 GFCKAKEMDIAKELL 431 (591)
Q Consensus 417 ~~~~~~~~~~a~~~~ 431 (591)
.|.+.|++.+|+.-|
T Consensus 99 ~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 99 KLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHHTT-HHHHHHHH
T ss_pred HHHhhccHHHHHHHH
Confidence 666666666655433
No 459
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=43.12 E-value=2.9e+02 Score=26.05 Aligned_cols=96 Identities=15% Similarity=0.089 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCCCCh----H
Q 048533 304 VTYTTLIDGYCRANDLEEALRLREVMAA----KGVYPGVVTYNSILRKL-CKEGRIRDANRLLNEMNEKKIAPDN----V 374 (591)
Q Consensus 304 ~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~----~ 374 (591)
..+......||+.|+-+.|++.+....+ .|.+.|...+.+-+..+ ....-+.+-++..+.+.+.|...+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 4455666778899998888887765543 46677766554444333 2333345555556666666654333 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048533 375 TCNTLINAYCKIGDTASAMKVKNRMLE 401 (591)
Q Consensus 375 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 401 (591)
+|..+- +....++.+|-.+|-+...
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 333322 2345677777777766654
No 460
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=42.53 E-value=1.6e+02 Score=24.10 Aligned_cols=61 Identities=8% Similarity=0.040 Sum_probs=33.5
Q ss_pred HHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 048533 153 FDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSS 214 (591)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 214 (591)
...+.+.|.+++ ..-..++..+.+.++.-.|.++|+.+.+.++..+..|--..++.+...|
T Consensus 9 ~~~lk~~glr~T-~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 9 IERLKEAGLRLT-PQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHcCCCcC-HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334445555533 2234555666666666777777777777666555444323344555444
No 461
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=42.12 E-value=2.1e+02 Score=32.07 Aligned_cols=199 Identities=15% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 82 WTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 82 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
...++-+...++|.+|..+.++-+ +.+.--.+-++..+..-+..+.++=+--+-+.+|-.-++..-
T Consensus 698 L~~ir~~Ld~~~Y~~Af~~~RkhR--------------IdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~ED 763 (928)
T PF04762_consen 698 LAGIRKLLDAKDYKEAFELCRKHR--------------IDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNED 763 (928)
T ss_pred HHHHHHHHhhccHHHHHHHHHHhc--------------cccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhccccc
Q ss_pred ccCHHhHHHHH------------HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--ChhhHHHHHHHHh
Q 048533 162 MPHLHACTVLL------------NSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSS--DVDKVEKLLCEME 227 (591)
Q Consensus 162 ~~~~~~~~~ll------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~ 227 (591)
. +...|.... ......+++...-+.+....+. ..-.......++.+|.+.+ +++.|+.+..++.
T Consensus 764 v-t~tmY~~~~~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~ 841 (928)
T PF04762_consen 764 V-TKTMYKDTYPPSSEAQPNSNSSTASSESKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELR 841 (928)
T ss_pred c-cccccccccccccccccccccCCCccccHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHH
Q ss_pred hCCCCcCcccHHHHHHHHHhcCChhHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHhc-------------CCHHHHH
Q 048533 228 FKDVRADLFTYNTLIALYCKKGMHYEALAVQDR----MEREGISPDIVTYNSLIHGFCRE-------------GRMREAR 290 (591)
Q Consensus 228 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~----~~~~~~~p~~~~~~~l~~~~~~~-------------g~~~~A~ 290 (591)
+.+...-..+...++-.---..-++.|+.+|+- |....-.-|+.-|...++-+.+. +++++|+
T Consensus 842 ~~~~~~ae~alkyl~fLvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~rry~ID~hLkRy~kAL 921 (928)
T PF04762_consen 842 EEDPESAEEALKYLCFLVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLPFLQELQKLPPLYRRYKIDDHLKRYEKAL 921 (928)
T ss_pred hcChHHHHHHHhHheeeccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHHHHHHHHhCChhheeeeHhhhhCCHHHHH
Q ss_pred HHHHHh
Q 048533 291 RLFRDI 296 (591)
Q Consensus 291 ~~~~~~ 296 (591)
+.+.++
T Consensus 922 ~~L~~~ 927 (928)
T PF04762_consen 922 RHLSAC 927 (928)
T ss_pred HHHHhh
No 462
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=42.05 E-value=1.2e+02 Score=27.62 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=13.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHh
Q 048533 275 SLIHGFCREGRMREARRLFRDI 296 (591)
Q Consensus 275 ~l~~~~~~~g~~~~A~~~~~~~ 296 (591)
.+..-|.+.|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3455566666666666666655
No 463
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=41.33 E-value=37 Score=26.95 Aligned_cols=32 Identities=9% Similarity=0.067 Sum_probs=18.8
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 523 YWRAGEPKACSDILDDMYRRRLMITLKIYRSFSA 556 (591)
Q Consensus 523 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 556 (591)
....|.-.+|-.+|++|++.|-+|| .|+.|+.
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 3444556666677777777766554 4555444
No 464
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.63 E-value=49 Score=30.57 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 169 TVLLNSLAKDRLTDMVWKVYKKMVQLGVV 197 (591)
Q Consensus 169 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (591)
+..|....+.||+++|++++++..+.|..
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34444444555555555555555555444
No 465
>PRK14700 recombination factor protein RarA; Provisional
Probab=40.02 E-value=3.2e+02 Score=25.58 Aligned_cols=101 Identities=11% Similarity=-0.002 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcC--C---CCchHHHHHHHh-hcCCCCCccchHHHHHHHHHh---cCChH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRD--F---LSTPSVLNALVK-IHDDPDGNSHVLSWLVIFYAN---LKMTQ 147 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~---~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~---~~~~~ 147 (591)
+.++...++. ...|+...|+..+|.+.... . ..+...+...++ .....+.+.+-+.-+++++.+ -.+++
T Consensus 66 ~~~al~~ia~--~a~GDaR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpD 143 (300)
T PRK14700 66 DDGLYNAMHN--YNEGDCRKILNLLERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPD 143 (300)
T ss_pred CHHHHHHHHH--hcCCHHHHHHHHHHHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCcc
Confidence 3444333332 35677777777777744311 0 022222222221 112233344445555555543 35677
Q ss_pred HHHHHHHHHhhCCCccCHHhHHHHHHHHHhcC
Q 048533 148 DGLQVFDQMRVHNLMPHLHACTVLLNSLAKDR 179 (591)
Q Consensus 148 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 179 (591)
.|+-++.+|++.|-.|...+-..++-+.-.-|
T Consensus 144 AAlYyLArml~~GEDp~~IaRRLii~AsEDIG 175 (300)
T PRK14700 144 AAIFWLSVMLDNGVDPLVIARRMLCIASEDIG 175 (300)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 77777777777776655444444444444444
No 466
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=39.37 E-value=3.3e+02 Score=31.07 Aligned_cols=122 Identities=12% Similarity=0.033 Sum_probs=59.3
Q ss_pred HhcCChhHHHH------HHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHH-------hhCCCCcCcccHHHHH
Q 048533 176 AKDRLTDMVWK------VYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEM-------EFKDVRADLFTYNTLI 242 (591)
Q Consensus 176 ~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~-------~~~~~~~~~~~~~~li 242 (591)
...+.+.++.+ +++.....-.+.....|..+...+-+.|+.++|...-.+. ...+.+-+...|..+.
T Consensus 943 ~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nla 1022 (1236)
T KOG1839|consen 943 LLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLA 1022 (1236)
T ss_pred hcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHH
Confidence 33445554444 4443332222334556667777777777777776654332 1112222233444444
Q ss_pred HHHHhcCChhHHHHHHHHHHHC-----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048533 243 ALYCKKGMHYEALAVQDRMERE-----GI-SP-DIVTYNSLIHGFCREGRMREARRLFRDIK 297 (591)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~~-----~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 297 (591)
......++...|...+.+.... |. .| ...+++.+-..+...++++.|.++.+.+.
T Consensus 1023 l~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~ 1084 (1236)
T KOG1839|consen 1023 LYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESAL 1084 (1236)
T ss_pred HHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4444555555565555544331 11 22 23333444444444456666666665553
No 467
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=39.23 E-value=2.5e+02 Score=24.17 Aligned_cols=54 Identities=20% Similarity=0.108 Sum_probs=25.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCC--------------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048533 379 LINAYCKIGDTASAMKVKNRMLEAGL--------------MLDQFTYKALIHGFCKAKEMDIAKELLF 432 (591)
Q Consensus 379 li~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 432 (591)
++..|-+..++.+.+++++.+.+..+ .+.-...|.....+.+.|..+.|..+++
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 33444444555555555555544321 1122334444555555566665555554
No 468
>PHA02875 ankyrin repeat protein; Provisional
Probab=38.54 E-value=4e+02 Score=26.33 Aligned_cols=13 Identities=0% Similarity=-0.013 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhC
Q 048533 495 DYAQRLFNLMQGN 507 (591)
Q Consensus 495 ~~a~~~~~~~~~~ 507 (591)
+++.+-++.|...
T Consensus 297 ~~C~~ei~~mk~~ 309 (413)
T PHA02875 297 EKCIIELRRIKSE 309 (413)
T ss_pred HHHHHHHHHHHhh
Confidence 3455566666654
No 469
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.44 E-value=39 Score=26.88 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=25.1
Q ss_pred HHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHH
Q 048533 140 YANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSL 175 (591)
Q Consensus 140 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 175 (591)
...-|.-.+|-.+|..|++.|-+|| .|+.|+...
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 4455677788888899988888777 677776643
No 470
>PRK09857 putative transposase; Provisional
Probab=38.42 E-value=2.7e+02 Score=26.07 Aligned_cols=65 Identities=9% Similarity=0.060 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 048533 482 RALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMIT 547 (591)
Q Consensus 482 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 547 (591)
..++.-....++.++..++++.+.+. .++......++..-+.+.|.-+++.++..+|...|+.++
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 33444334455655566666666554 233334455666666666766777788888888887654
No 471
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=38.00 E-value=3.3e+02 Score=25.20 Aligned_cols=97 Identities=10% Similarity=0.107 Sum_probs=51.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCChH---
Q 048533 303 HVTYTTLIDGYCRANDLEEALRLREVMAA----KGVYPGVVTYNSIL-RKLCKEGRIRDANRLLNEMNEKKIAPDNV--- 374 (591)
Q Consensus 303 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--- 374 (591)
..++..+...|++.++.+.+.++..+..+ .|.+.|.....+-+ -.|....-+++-++..+.+.+.|...+..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 45566777778888887777776655443 35554543222211 22333334566777777777776543322
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048533 375 -TCNTLINAYCKIGDTASAMKVKNRMLE 401 (591)
Q Consensus 375 -~~~~li~~~~~~~~~~~a~~~~~~~~~ 401 (591)
+|..+- +....++.+|-.++.+...
T Consensus 195 K~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 195 KVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 222221 1223456666666655543
No 472
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=37.98 E-value=65 Score=29.85 Aligned_cols=33 Identities=6% Similarity=0.002 Sum_probs=17.7
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 048533 130 SHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLM 162 (591)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 162 (591)
...|+..|..-.+.|++++|+++++++.+.|..
T Consensus 257 e~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 257 ESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 334445555555555555555555555555543
No 473
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=37.92 E-value=3.2e+02 Score=24.99 Aligned_cols=128 Identities=11% Similarity=-0.014 Sum_probs=76.8
Q ss_pred cCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh-hHH
Q 048533 143 LKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAK-DRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVD-KVE 220 (591)
Q Consensus 143 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~-~a~ 220 (591)
...-..|+++-+.++..++. +...|+.--..+.. ..+..+-++.+.++.+.+++ |-.+|..-=......|++. .-+
T Consensus 56 ~E~S~RAl~LT~d~i~lNpA-nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK-NYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPA-NYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK-NYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred cccCHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHhcCcccchH
Confidence 34556777888887777655 55555433333322 12355566677777776655 6666554444444455665 566
Q ss_pred HHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 048533 221 KLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYN 274 (591)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 274 (591)
++.+.|...+ ..+-.+|..---++...+.++.-+.+..++++..+. |-.+||
T Consensus 134 ef~~~~l~~D-aKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~-NNSAWN 185 (318)
T KOG0530|consen 134 EFTKLMLDDD-AKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR-NNSAWN 185 (318)
T ss_pred HHHHHHHhcc-ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh-ccchhh
Confidence 7777777643 235555665555666677788888888888776554 333443
No 474
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=37.61 E-value=3.3e+02 Score=25.12 Aligned_cols=94 Identities=17% Similarity=0.230 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH----HhCCCCCChHHHHHH-HHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHH
Q 048533 343 SILRKLCKEGRIRDANRLLNEM----NEKKIAPDNVTCNTL-INAYCKIGDTASAMKVKNRMLEA----GLMLDQFTYKA 413 (591)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ 413 (591)
.++..+.+.|++.+|+.+...+ .+..-+|+..+...+ -.+|-...+..++..-+...... -.+|....-.-
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD 209 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD 209 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence 4566777888888887765543 333333433322211 12333344444444333333221 12333333333
Q ss_pred HHHH--HHhcCCHHHHHHHHHHHHH
Q 048533 414 LIHG--FCKAKEMDIAKELLFGMLD 436 (591)
Q Consensus 414 l~~~--~~~~~~~~~a~~~~~~~~~ 436 (591)
++.+ .|...++..|...|-+..+
T Consensus 210 L~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 210 LLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HhccceeeccccchhHHHHHHHHHh
Confidence 3333 2445667777777776665
No 475
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=36.48 E-value=5.3e+02 Score=27.14 Aligned_cols=74 Identities=11% Similarity=0.030 Sum_probs=43.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCC--CccCHHhHHHHHHHHHhcCChhH------HHHHHHHHHHCCCCCCHHHHHHH
Q 048533 135 WLVIFYANLKMTQDGLQVFDQMRVHN--LMPHLHACTVLLNSLAKDRLTDM------VWKVYKKMVQLGVVANIHLYNVL 206 (591)
Q Consensus 135 ~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~~l 206 (591)
+|+.+|..+|++..+.++++.....+ -+.-...+|..++...+.|.++. |.+.++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 67777777777777777777766542 22234567777777777776543 223333222 33455666555
Q ss_pred HHHHH
Q 048533 207 IHACC 211 (591)
Q Consensus 207 l~~~~ 211 (591)
+.+..
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 55433
No 476
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.23 E-value=71 Score=34.21 Aligned_cols=128 Identities=13% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcC
Q 048533 170 VLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKG 249 (591)
Q Consensus 170 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 249 (591)
++|..+.+.|..+-|+...++=..+ ...+..+|+++.|++...++- |..+|..|+......|
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~tR------------F~LaLe~gnle~ale~akkld------d~d~w~rLge~Al~qg 686 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDERTR------------FELALECGNLEVALEAAKKLD------DKDVWERLGEEALRQG 686 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcchh------------eeeehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhc
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 250 MHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREV 328 (591)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 328 (591)
+.+-|+..|++.+. |..|--.|.-.|+.++-.++.+... ..+..+-......| .|+.++-.++++.
T Consensus 687 n~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae--~r~D~~~~~qnalY--l~dv~ervkIl~n 752 (1202)
T KOG0292|consen 687 NHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAE--IRNDATGQFQNALY--LGDVKERVKILEN 752 (1202)
T ss_pred chHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHH--hhhhhHHHHHHHHH--hccHHHHHHHHHh
No 477
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=36.18 E-value=2.2e+02 Score=27.12 Aligned_cols=65 Identities=12% Similarity=0.149 Sum_probs=50.6
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHH-HHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHH
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHW-TMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALV 120 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 120 (591)
...++.+..+..+++..|+ ..-..-|| .++++....|.+++.+.+|+++...|..+-..+-..++
T Consensus 117 cp~eei~~~L~~li~~IP~-A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~ 182 (353)
T PF15297_consen 117 CPKEEILATLSDLIKNIPD-AKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLV 182 (353)
T ss_pred CCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 4556888889988888886 23344566 69999999999999999999999988877666555444
No 478
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=35.80 E-value=2.3e+02 Score=22.71 Aligned_cols=27 Identities=11% Similarity=0.147 Sum_probs=15.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048533 448 WLVDGYCNKNNEEALLKLLDEFVSRGL 474 (591)
Q Consensus 448 ~l~~~~~~~g~~~~a~~~~~~~~~~~~ 474 (591)
.++--+...|+++.|+.+.+.+++.|.
T Consensus 53 ~~mvW~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 53 TVMVWLFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred hhHhhhhcccCHHHHHHHHHHHHHcCC
Confidence 334444556666666666666666554
No 479
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=35.72 E-value=4.4e+02 Score=25.89 Aligned_cols=15 Identities=27% Similarity=0.217 Sum_probs=8.0
Q ss_pred cCCHHHHHHHHHHHH
Q 048533 421 AKEMDIAKELLFGML 435 (591)
Q Consensus 421 ~~~~~~a~~~~~~~~ 435 (591)
.|+++.|...+-+++
T Consensus 254 ~gryddAvarlYR~l 268 (379)
T PF09670_consen 254 QGRYDDAVARLYRAL 268 (379)
T ss_pred cCCHHHHHHHHHHHH
Confidence 566666655444443
No 480
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=35.36 E-value=2e+02 Score=21.97 Aligned_cols=81 Identities=20% Similarity=0.194 Sum_probs=43.0
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 048533 248 KGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLRE 327 (591)
Q Consensus 248 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 327 (591)
....++|..+.+.+...+.. ...+--.-+..+.+.|++++| +..-.....||...|-++.. .+.|-.+++...+.
T Consensus 19 ~HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA--LLLPQCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH--HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH--HHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 34567777777777766432 222223334556677777777 33333335566666655433 45677777777777
Q ss_pred HHHHCC
Q 048533 328 VMAAKG 333 (591)
Q Consensus 328 ~~~~~~ 333 (591)
++..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 666554
No 481
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=35.21 E-value=4.1e+02 Score=25.43 Aligned_cols=63 Identities=11% Similarity=0.034 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhCCCCcCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhh
Q 048533 495 DYAQRLFNLMQGNGILGDS----VIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYA 559 (591)
Q Consensus 495 ~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 559 (591)
++...++..++.. .|+. ..|..++......|.+++++.+|++++..|..|-...-..+++.+.
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3555566666553 3343 3566677777777777777777777777777766555555555544
No 482
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=34.81 E-value=2.7e+02 Score=24.19 Aligned_cols=28 Identities=4% Similarity=-0.027 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 445 SYSWLVDGYCNKNNEEALLKLLDEFVSR 472 (591)
Q Consensus 445 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 472 (591)
..+.++..+...|+++.|.+.|.-++..
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 4555666666677777777777766654
No 483
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=34.64 E-value=3.2e+02 Score=25.56 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=12.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhh
Q 048533 276 LIHGFCREGRMREARRLFRDIK 297 (591)
Q Consensus 276 l~~~~~~~g~~~~A~~~~~~~~ 297 (591)
.+..+...|++..|++++.+..
T Consensus 133 ~l~~ll~~~dy~~Al~li~~~~ 154 (291)
T PF10475_consen 133 RLQELLEEGDYPGALDLIEECQ 154 (291)
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 3444555666666666665554
No 484
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=34.57 E-value=1e+02 Score=28.46 Aligned_cols=59 Identities=12% Similarity=0.043 Sum_probs=32.8
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 84 MIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 84 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
.+.-..+.|+.++|..+|+.+.... |.+++++..+....-...+.-+|-++|-+++..+
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlala------------------P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis 180 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALA------------------PTNPQILIEMGQFREMHNEIVEADQCYVKALTIS 180 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcC------------------CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC
Confidence 3444455666666666666666543 3444455555555555555556666665555543
No 485
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=34.51 E-value=2.3e+02 Score=28.04 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=19.9
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHc
Q 048533 83 TMIHILTKNKHFKSAQNMLEKIALR 107 (591)
Q Consensus 83 ~l~~~~~~~g~~~~A~~~~~~~~~~ 107 (591)
..+.-+...|+|.+|+..|+.++..
T Consensus 209 k~gyk~~t~gKF~eA~~~Fr~iL~~ 233 (422)
T PF06957_consen 209 KEGYKLFTAGKFEEAIEIFRSILHS 233 (422)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3566788899999999999998874
No 486
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=34.42 E-value=82 Score=27.86 Aligned_cols=56 Identities=13% Similarity=0.071 Sum_probs=48.5
Q ss_pred cCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC
Q 048533 52 NCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFL 110 (591)
Q Consensus 52 ~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 110 (591)
.+.++.+.|.+.+..+.+.-|. ....|+.++..--++|+++.|.+-+++..+.++.
T Consensus 6 ~~~~D~~aaaely~qal~lap~---w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPE---WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred cccCChHHHHHHHHHHhhcCch---hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 4558999999999999987776 6778889999999999999999999999887653
No 487
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=34.36 E-value=2.1e+02 Score=21.89 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRV 158 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 158 (591)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467788888888999999999888876
No 488
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=34.12 E-value=6.4e+02 Score=27.37 Aligned_cols=407 Identities=10% Similarity=-0.017 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHh---cCChhHHH
Q 048533 179 RLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCK---KGMHYEAL 255 (591)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~ 255 (591)
+.-+.-+.-++.-...+.. +...+..||..+.+.|++++....-..|... .+.+...|...+..... .+...++.
T Consensus 93 ~~~~~ei~t~~ee~ai~~y-~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~ 170 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSY-KYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVE 170 (881)
T ss_pred ccchhHHHHHHHHhccccc-chHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHH
Q ss_pred HHHHHHHHCCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHhhc--------CCCChhhHHHHHHHHHhcCCHHHH
Q 048533 256 AVQDRMEREGISPDIVTY-----NSLIHGFCREGRMREARRLFRDIKG--------ATPNHVTYTTLIDGYCRANDLEEA 322 (591)
Q Consensus 256 ~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~a 322 (591)
.+|++....-..++.+.. ...+..+.+.++++....+|.+... -......|.-+-..|..+-..++.
T Consensus 171 ~~~ekal~dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv 250 (881)
T KOG0128|consen 171 ELFEKALGDYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQV 250 (881)
T ss_pred HHHHHHhcccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------------CCCCChHHHHHHHHHHHHcCCH
Q 048533 323 LRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEK-------------KIAPDNVTCNTLINAYCKIGDT 389 (591)
Q Consensus 323 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------------~~~~~~~~~~~li~~~~~~~~~ 389 (591)
..++..-...+ .|..+.+.-+.-..+...++.+..-++.+.+. ..++-...|..++.-+...|++
T Consensus 251 ~a~~~~el~~~--~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p 328 (881)
T KOG0128|consen 251 IALFVRELKQP--LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDP 328 (881)
T ss_pred HHHHHHHHhcc--chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Q ss_pred HHHHHHHHHHHHC-------------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048533 390 ASAMKVKNRMLEA-------------------------------GLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAG 438 (591)
Q Consensus 390 ~~a~~~~~~~~~~-------------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 438 (591)
.....+++++... .+...+.+....-++.....+..+-..++..-....
T Consensus 329 ~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ 408 (881)
T KOG0128|consen 329 VRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKD 408 (881)
T ss_pred hHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHH
Q ss_pred CCCCHHHHHHHHHHHHhcCC-------------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 048533 439 FSPSYCSYSWLVDGYCNKNN-------------EEALLKLLDEFVSRGLCVDVSVYRALIRRFC-KKEKVDYAQRLFNLM 504 (591)
Q Consensus 439 ~~~~~~~~~~l~~~~~~~g~-------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~ 504 (591)
+.-....++.........++ +..|...|.........+...+......... ..++.+.++.+|+..
T Consensus 409 ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~i 488 (881)
T KOG0128|consen 409 LSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFI 488 (881)
T ss_pred HHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhcc
Q ss_pred HhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHhhhcchhHHHHHHHHHHhcCCCChHH
Q 048533 505 QGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLK--IYRSFSASYAKDNEILDLFWSHVVDRGLMSKHI 582 (591)
Q Consensus 505 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (591)
...|..-=...|...+..-...|+...++.+++.+.-.-..|+.. ++-.+.+.-...|.++............+....
T Consensus 489 mty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~~pr~~~~~ 568 (881)
T KOG0128|consen 489 MTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPEKVLPRVYEAP 568 (881)
T ss_pred ccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHHhhcchhhhhh
Q ss_pred HHHHHhh
Q 048533 583 FKEMQLR 589 (591)
Q Consensus 583 ~~~~~~~ 589 (591)
+++....
T Consensus 569 ~~~~e~~ 575 (881)
T KOG0128|consen 569 LERREKE 575 (881)
T ss_pred hhhhhhc
No 489
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.01 E-value=2e+02 Score=21.53 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=24.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhH
Q 048533 256 AVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTY 306 (591)
Q Consensus 256 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 306 (591)
+.+++....+....+-....|.-.|.+.|+.+.|.+-|+.-+..-|.+.+|
T Consensus 58 ~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 58 KYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 344444443322222333344445666666666666666555444444443
No 490
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.41 E-value=6.8e+02 Score=27.44 Aligned_cols=52 Identities=13% Similarity=0.077 Sum_probs=33.1
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 85 IHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 85 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
=..|.+.|+|+.|.+..+.-. ..-..++..-+..|.+.+++..|-++|-++.
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~p---------------------~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTRP---------------------DALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHHhcchHHHHHHhccCCH---------------------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 345667777777766643321 1112345556677888889999999888774
No 491
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=33.35 E-value=3.1e+02 Score=28.72 Aligned_cols=90 Identities=16% Similarity=0.168 Sum_probs=57.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC--CCCChHHHHHHHHHHHHcCCHH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 048533 343 SILRKLCKEGRIRDANRLLNEMNEKK--IAPDNVTCNTLINAYCKIGDTA------SAMKVKNRMLEAGLMLDQFTYKAL 414 (591)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 414 (591)
.++.+|...|++..+.++++...... -+.-...+|..++...+.|.++ .|.+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78889999999999999999887652 2223345777888888888754 3444444433 34577788777
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 048533 415 IHGFCKAKEMDIAKELLFGML 435 (591)
Q Consensus 415 ~~~~~~~~~~~~a~~~~~~~~ 435 (591)
+.+-...-+-....-++.+.+
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 766554333333333444443
No 492
>PRK13342 recombination factor protein RarA; Reviewed
Probab=32.89 E-value=5.1e+02 Score=25.79 Aligned_cols=21 Identities=38% Similarity=0.393 Sum_probs=10.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCC
Q 048533 422 KEMDIAKELLFGMLDAGFSPS 442 (591)
Q Consensus 422 ~~~~~a~~~~~~~~~~~~~~~ 442 (591)
++.+.|...+..|++.|..|.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 445555555555555544333
No 493
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=32.26 E-value=91 Score=18.48 Aligned_cols=28 Identities=21% Similarity=0.082 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 048533 79 QSHWTMIHILTKNKHFKSAQNMLEKIAL 106 (591)
Q Consensus 79 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 106 (591)
++|..++.+-...++|++|..=|++...
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3567788888888999999888887765
No 494
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=32.17 E-value=7.1e+02 Score=28.67 Aligned_cols=153 Identities=14% Similarity=0.018 Sum_probs=90.6
Q ss_pred HHcCCHHHHHH------HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------HCCCCCCHHHHHHHH
Q 048533 384 CKIGDTASAMK------VKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGML-------DAGFSPSYCSYSWLV 450 (591)
Q Consensus 384 ~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~l~ 450 (591)
...|.+.++.+ ++......-.+.....|..+...+.+.++.++|...-.... ....+-+...|..+.
T Consensus 943 ~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nla 1022 (1236)
T KOG1839|consen 943 LLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLA 1022 (1236)
T ss_pred hcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHH
Confidence 33445555554 55533332223456678888888889999998887655432 122222344555665
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC--CcCHHHH
Q 048533 451 DGYCNKNNEEALLKLLDEFVSR-----G--LCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGN-----GI--LGDSVIY 516 (591)
Q Consensus 451 ~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~--~p~~~~~ 516 (591)
-.+...++...|...+.+.... | .+|...+++.+-..+...++.+.|.++.+.+... |. -++..++
T Consensus 1023 l~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~ 1102 (1236)
T KOG1839|consen 1023 LYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSY 1102 (1236)
T ss_pred HHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHH
Confidence 5556666777777777776643 2 2333444455554555668899999999888753 21 1234566
Q ss_pred HHHHHHHHHcCChhHHHHHH
Q 048533 517 TSLAYAYWRAGEPKACSDIL 536 (591)
Q Consensus 517 ~~l~~~~~~~g~~~~A~~~~ 536 (591)
..+...+...+++..|....
T Consensus 1103 ~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1103 HALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred HHHHHHHhhhHHHHHHHHHH
Confidence 66766666666666654443
No 495
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=31.99 E-value=1.4e+02 Score=22.91 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=30.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048533 241 LIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRM 286 (591)
Q Consensus 241 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 286 (591)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4445555566667777788877776666766666666666666643
No 496
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=31.81 E-value=2.3e+02 Score=21.60 Aligned_cols=60 Identities=10% Similarity=0.122 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCC
Q 048533 447 SWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKE--KVDYAQRLFNLMQGNG 508 (591)
Q Consensus 447 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~ 508 (591)
..++.-|...++.++|.+.+.++.... -.......++..+...+ .-+....++..+.+.+
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~--~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPE--QHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCc--chHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 456677888899999999998875432 24445556666555543 3344555666666554
No 497
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=31.75 E-value=2e+02 Score=20.89 Aligned_cols=43 Identities=21% Similarity=0.265 Sum_probs=22.7
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 499 RLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 499 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
++|+-....|+..|+..|..+++.+.-.=-++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 4555555555555555555555555544445555555555543
No 498
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.69 E-value=2.7e+02 Score=23.43 Aligned_cols=67 Identities=6% Similarity=-0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcch
Q 048533 495 DYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDN 562 (591)
Q Consensus 495 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 562 (591)
+....+-+.+.+.|++++..=. .++..+...++.-.|.++++.+.+.+..++..|--.-++.+.+.|
T Consensus 8 ~~~~~~~~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 8 ELLAQAEKLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
No 499
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=30.64 E-value=1.5e+02 Score=20.73 Aligned_cols=41 Identities=12% Similarity=0.132 Sum_probs=26.5
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcchhHH
Q 048533 525 RAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNEIL 565 (591)
Q Consensus 525 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 565 (591)
-.|+.+.+.+++++..+.|..|.......+..+..+-|+..
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~~w 53 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGELW 53 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777666666666666666655543
No 500
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=30.20 E-value=1.4e+02 Score=23.23 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=28.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048533 240 TLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGR 285 (591)
Q Consensus 240 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 285 (591)
.++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 4555556666677777777777777766666666556666665553
Done!