Query 048533
Match_columns 591
No_of_seqs 629 out of 3826
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 18:03:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048533.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048533hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4E-39 1.4E-43 336.4 43.3 453 77-559 83-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.3E-38 7.7E-43 330.7 40.9 447 129-586 83-590 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 9.9E-29 3.4E-33 243.0 44.7 356 53-436 11-367 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.4E-28 8.3E-33 240.2 46.5 381 85-527 6-387 (388)
5 4g26_A Pentatricopeptide repea 100.0 3.7E-29 1.3E-33 249.6 26.2 206 357-562 9-224 (501)
6 4g26_A Pentatricopeptide repea 100.0 2.3E-28 7.9E-33 243.8 25.7 186 305-490 28-222 (501)
7 2gw1_A Mitochondrial precursor 100.0 6.9E-25 2.4E-29 224.2 38.5 439 78-543 6-479 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.5E-24 5.2E-29 221.6 36.2 436 45-507 10-478 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 1.6E-23 5.4E-28 210.3 38.4 304 37-366 22-357 (450)
10 3fp2_A TPR repeat-containing p 99.9 2E-23 6.8E-28 214.6 37.6 435 78-544 25-493 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 3.2E-23 1.1E-27 208.0 38.1 317 58-402 9-358 (450)
12 3fp2_A TPR repeat-containing p 99.9 4.3E-23 1.5E-27 212.2 37.8 428 43-507 27-491 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 5.3E-20 1.8E-24 178.4 37.5 323 46-417 8-349 (359)
14 2xm6_A Protein corresponding t 99.9 1.8E-17 6.1E-22 167.7 53.5 382 148-560 25-452 (490)
15 3ieg_A DNAJ homolog subfamily 99.9 1.8E-19 6.1E-24 174.7 37.2 333 77-456 2-353 (359)
16 2xm6_A Protein corresponding t 99.9 8.2E-18 2.8E-22 170.2 49.3 367 128-522 37-449 (490)
17 2ooe_A Cleavage stimulation fa 99.9 4.9E-18 1.7E-22 173.6 44.8 427 64-542 2-492 (530)
18 3hym_B Cell division cycle pro 99.9 5.4E-19 1.8E-23 169.1 32.3 283 77-383 21-314 (330)
19 2ooe_A Cleavage stimulation fa 99.9 2E-17 6.8E-22 169.1 45.7 411 127-566 10-481 (530)
20 3hym_B Cell division cycle pro 99.9 4.6E-19 1.6E-23 169.6 29.5 285 45-354 26-321 (330)
21 1xi4_A Clathrin heavy chain; a 99.8 2.5E-15 8.7E-20 159.0 54.1 479 34-574 866-1381(1630)
22 1fch_A Peroxisomal targeting s 99.8 4.2E-19 1.4E-23 172.9 23.7 304 54-398 38-355 (368)
23 1fch_A Peroxisomal targeting s 99.8 2.1E-18 7.2E-23 167.8 27.6 309 88-435 35-357 (368)
24 1xi4_A Clathrin heavy chain; a 99.8 3.9E-15 1.3E-19 157.5 52.1 411 77-562 984-1415(1630)
25 4eqf_A PEX5-related protein; a 99.8 1.3E-18 4.4E-23 169.1 20.6 267 77-363 64-352 (365)
26 4g1t_A Interferon-induced prot 99.8 3.5E-17 1.2E-21 165.0 30.8 391 42-473 52-460 (472)
27 4eqf_A PEX5-related protein; a 99.8 1.5E-17 5.2E-22 161.6 26.1 264 128-395 63-349 (365)
28 4g1t_A Interferon-induced prot 99.8 1.5E-16 5.1E-21 160.4 34.1 393 75-508 48-460 (472)
29 3cv0_A Peroxisome targeting si 99.8 1E-17 3.4E-22 160.0 23.8 268 50-363 30-311 (327)
30 1b89_A Protein (clathrin heavy 99.8 6.9E-18 2.4E-22 160.2 21.2 286 88-432 13-306 (449)
31 3cv0_A Peroxisome targeting si 99.8 7.6E-17 2.6E-21 153.9 27.6 232 129-365 20-267 (327)
32 1b89_A Protein (clathrin heavy 99.8 1.7E-17 5.8E-22 157.5 21.0 283 141-465 14-304 (449)
33 3mkr_A Coatomer subunit epsilo 99.8 2.3E-16 8E-21 146.9 26.4 252 140-403 9-265 (291)
34 3mkr_A Coatomer subunit epsilo 99.8 3.6E-16 1.2E-20 145.6 27.3 246 283-542 12-264 (291)
35 2h6f_A Protein farnesyltransfe 99.7 1.4E-15 4.8E-20 146.4 24.5 245 42-312 98-362 (382)
36 3e4b_A ALGK; tetratricopeptide 99.7 5.5E-15 1.9E-19 147.0 27.9 374 136-541 9-420 (452)
37 2pl2_A Hypothetical conserved 99.7 8.3E-16 2.8E-20 136.8 19.2 196 77-295 4-210 (217)
38 3e4b_A ALGK; tetratricopeptide 99.7 4.1E-15 1.4E-19 147.9 26.1 343 50-438 12-388 (452)
39 2pl2_A Hypothetical conserved 99.7 6.3E-16 2.1E-20 137.5 17.8 194 44-262 8-212 (217)
40 2h6f_A Protein farnesyltransfe 99.7 5.9E-15 2E-19 142.0 23.6 247 77-348 96-363 (382)
41 3uq3_A Heat shock protein STI1 99.7 1.8E-14 6.1E-19 132.2 25.1 225 304-542 6-236 (258)
42 3spa_A Mtrpol, DNA-directed RN 99.7 1.6E-16 5.4E-21 163.0 12.0 152 407-563 126-287 (1134)
43 3spa_A Mtrpol, DNA-directed RN 99.7 4.7E-17 1.6E-21 166.7 8.0 162 164-329 126-307 (1134)
44 1xnf_A Lipoprotein NLPI; TPR, 99.7 2.1E-15 7.2E-20 139.9 16.3 250 52-326 16-269 (275)
45 3uq3_A Heat shock protein STI1 99.6 2.6E-14 9E-19 131.0 23.1 220 237-470 7-234 (258)
46 3u4t_A TPR repeat-containing p 99.6 2.2E-14 7.4E-19 132.8 22.4 234 48-302 10-253 (272)
47 3u4t_A TPR repeat-containing p 99.6 4.7E-14 1.6E-18 130.6 24.5 234 78-332 3-250 (272)
48 4e6h_A MRNA 3'-END-processing 99.6 7.2E-12 2.5E-16 128.6 42.5 440 56-543 47-571 (679)
49 1ouv_A Conserved hypothetical 99.6 1.5E-12 5.2E-17 120.4 33.8 224 302-543 5-252 (273)
50 1ouv_A Conserved hypothetical 99.6 3.3E-13 1.1E-17 124.9 29.0 223 77-332 5-251 (273)
51 2vq2_A PILW, putative fimbrial 99.6 9.4E-14 3.2E-18 124.3 24.0 206 77-302 7-214 (225)
52 2ho1_A Type 4 fimbrial biogene 99.6 1E-13 3.6E-18 126.6 24.7 205 78-303 37-242 (252)
53 4e6h_A MRNA 3'-END-processing 99.6 2E-11 6.9E-16 125.3 43.7 425 127-575 63-570 (679)
54 2ho1_A Type 4 fimbrial biogene 99.6 1E-13 3.6E-18 126.6 24.2 200 42-264 38-238 (252)
55 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.3E-14 4.4E-19 134.6 17.2 248 141-396 16-269 (275)
56 2q7f_A YRRB protein; TPR, prot 99.6 3.6E-14 1.2E-18 128.9 19.2 194 47-264 29-222 (243)
57 2vq2_A PILW, putative fimbrial 99.6 1.5E-13 5.2E-18 122.9 22.9 203 40-264 7-211 (225)
58 2q7f_A YRRB protein; TPR, prot 99.6 3.2E-13 1.1E-17 122.5 22.2 201 338-543 23-223 (243)
59 2ond_A Cleavage stimulation fa 99.6 6.4E-13 2.2E-17 125.2 24.8 221 58-302 33-273 (308)
60 4a1s_A PINS, partner of inscut 99.6 5.7E-14 2E-18 138.7 17.6 202 46-262 53-290 (411)
61 3ro2_A PINS homolog, G-protein 99.5 1.5E-13 5.2E-18 131.3 18.1 170 46-227 10-210 (338)
62 3sf4_A G-protein-signaling mod 99.5 4.8E-13 1.7E-17 131.6 22.0 281 44-366 12-335 (406)
63 4a1s_A PINS, partner of inscut 99.5 1.3E-13 4.6E-18 136.0 17.9 205 78-296 48-289 (411)
64 3vtx_A MAMA; tetratricopeptide 99.5 6.6E-13 2.3E-17 114.7 19.8 167 77-264 4-170 (184)
65 3sf4_A G-protein-signaling mod 99.5 3.8E-13 1.3E-17 132.4 19.9 298 235-564 9-363 (406)
66 3vtx_A MAMA; tetratricopeptide 99.5 9E-13 3.1E-17 113.8 19.6 172 128-303 3-174 (184)
67 4abn_A Tetratricopeptide repea 99.5 5.7E-13 2E-17 133.3 19.7 194 129-326 101-315 (474)
68 3ro2_A PINS homolog, G-protein 99.5 3.4E-13 1.2E-17 128.8 17.4 281 79-402 6-332 (338)
69 3ulq_A Response regulator aspa 99.5 3E-12 1E-16 124.9 23.4 312 38-365 7-366 (383)
70 3ulq_A Response regulator aspa 99.5 5.8E-12 2E-16 122.8 24.6 230 310-542 110-368 (383)
71 2ond_A Cleavage stimulation fa 99.5 8.8E-11 3E-15 110.5 29.8 220 320-543 33-271 (308)
72 4gyw_A UDP-N-acetylglucosamine 99.5 2.7E-12 9.2E-17 133.5 19.6 170 36-228 4-173 (723)
73 3nf1_A KLC 1, kinesin light ch 99.4 8.5E-13 2.9E-17 124.6 12.6 179 75-263 24-223 (311)
74 4abn_A Tetratricopeptide repea 99.4 6.1E-12 2.1E-16 125.8 18.9 210 146-361 84-315 (474)
75 4gyw_A UDP-N-acetylglucosamine 99.4 6.3E-12 2.2E-16 130.7 18.7 166 77-263 8-173 (723)
76 3q15_A PSP28, response regulat 99.4 5.5E-11 1.9E-15 115.6 24.3 312 37-365 6-363 (378)
77 1hz4_A MALT regulatory protein 99.4 9.1E-11 3.1E-15 113.9 23.1 241 44-296 17-279 (373)
78 3nf1_A KLC 1, kinesin light ch 99.4 2.5E-11 8.5E-16 114.5 18.2 239 303-542 27-307 (311)
79 1hz4_A MALT regulatory protein 99.4 4.8E-10 1.6E-14 108.8 27.6 274 79-365 15-320 (373)
80 3q15_A PSP28, response regulat 99.3 4.2E-10 1.4E-14 109.3 26.7 127 376-506 225-364 (378)
81 3as5_A MAMA; tetratricopeptide 99.3 4.8E-11 1.7E-15 102.8 17.7 160 46-228 13-172 (186)
82 3as5_A MAMA; tetratricopeptide 99.3 1.7E-11 6E-16 105.6 14.8 165 130-298 8-172 (186)
83 3edt_B KLC 2, kinesin light ch 99.3 3E-11 1E-15 112.1 15.3 165 54-228 14-197 (283)
84 4ga2_A E3 SUMO-protein ligase 99.3 1.3E-11 4.3E-16 102.2 10.9 146 47-215 3-149 (150)
85 4i17_A Hypothetical protein; T 99.3 7.6E-10 2.6E-14 99.0 23.1 196 336-543 5-210 (228)
86 3dra_A Protein farnesyltransfe 99.3 2E-09 6.7E-14 99.3 25.8 235 43-301 35-290 (306)
87 4i17_A Hypothetical protein; T 99.3 2.4E-10 8.3E-15 102.3 19.4 195 128-333 5-210 (228)
88 3qky_A Outer membrane assembly 99.3 1.3E-10 4.3E-15 106.6 16.3 192 39-264 13-224 (261)
89 1qqe_A Vesicular transport pro 99.2 4.6E-10 1.6E-14 104.6 17.6 233 58-330 2-267 (292)
90 3edt_B KLC 2, kinesin light ch 99.2 1.8E-10 6.1E-15 106.8 14.4 227 315-542 13-281 (283)
91 1qqe_A Vesicular transport pro 99.2 1.1E-09 3.7E-14 102.0 19.6 205 85-303 44-273 (292)
92 3urz_A Uncharacterized protein 99.2 5E-10 1.7E-14 98.4 16.4 181 77-263 3-185 (208)
93 2pzi_A Probable serine/threoni 99.2 1.6E-10 5.6E-15 120.9 15.3 185 89-297 402-603 (681)
94 2uy1_A Cleavage stimulation fa 99.2 3E-07 1E-11 91.8 37.7 353 144-541 28-412 (493)
95 3mv2_B Coatomer subunit epsilo 99.2 7E-09 2.4E-13 94.4 22.8 242 140-403 23-283 (310)
96 3urz_A Uncharacterized protein 99.2 7.9E-10 2.7E-14 97.2 16.1 167 133-304 7-191 (208)
97 2r5s_A Uncharacterized protein 99.2 2.5E-10 8.7E-15 97.4 12.3 154 51-227 16-171 (176)
98 2pzi_A Probable serine/threoni 99.2 5.9E-10 2E-14 116.6 16.9 151 164-318 432-583 (681)
99 3qky_A Outer membrane assembly 99.1 1E-09 3.4E-14 100.5 16.4 103 127-230 12-127 (261)
100 2yhc_A BAMD, UPF0169 lipoprote 99.1 2.3E-09 7.7E-14 95.6 17.6 181 49-265 12-214 (225)
101 2r5s_A Uncharacterized protein 99.1 7.1E-10 2.4E-14 94.6 13.4 166 77-263 5-172 (176)
102 3mv2_B Coatomer subunit epsilo 99.1 2.1E-08 7.3E-13 91.3 23.2 177 149-332 85-282 (310)
103 3qou_A Protein YBBN; thioredox 99.1 2.1E-09 7.3E-14 99.6 17.0 173 67-262 109-282 (287)
104 3qou_A Protein YBBN; thioredox 99.1 1.7E-09 5.7E-14 100.3 15.8 166 40-227 116-282 (287)
105 4ga2_A E3 SUMO-protein ligase 99.1 2.8E-10 9.5E-15 94.0 9.4 146 84-250 3-149 (150)
106 2yhc_A BAMD, UPF0169 lipoprote 99.1 4.7E-09 1.6E-13 93.5 17.8 193 77-303 3-217 (225)
107 2vsy_A XCC0866; transferase, g 99.1 1.4E-09 4.7E-14 112.0 16.3 162 55-240 3-167 (568)
108 3dra_A Protein farnesyltransfe 99.1 1E-07 3.6E-12 87.7 26.5 218 92-331 47-286 (306)
109 3rjv_A Putative SEL1 repeat pr 99.1 4.3E-08 1.5E-12 86.2 22.1 178 356-545 4-200 (212)
110 2fo7_A Synthetic consensus TPR 99.0 6.6E-09 2.2E-13 83.8 15.5 130 132-264 3-132 (136)
111 2uy1_A Cleavage stimulation fa 99.0 2.1E-07 7.3E-12 92.8 29.2 125 374-506 287-412 (493)
112 2fo7_A Synthetic consensus TPR 99.0 1.4E-08 4.7E-13 81.8 17.1 129 411-542 4-132 (136)
113 2ifu_A Gamma-SNAP; membrane fu 99.0 9.7E-09 3.3E-13 96.3 17.4 200 55-301 5-225 (307)
114 3q7a_A Farnesyltransferase alp 99.0 1E-07 3.5E-12 88.7 22.9 185 43-251 56-258 (349)
115 3rjv_A Putative SEL1 repeat pr 99.0 7.6E-08 2.6E-12 84.6 21.3 176 321-508 4-198 (212)
116 4gco_A Protein STI-1; structur 99.0 7.4E-09 2.5E-13 82.3 11.9 103 45-169 17-119 (126)
117 3q7a_A Farnesyltransferase alp 98.9 5.9E-07 2E-11 83.6 25.3 176 88-285 64-257 (349)
118 3gyz_A Chaperone protein IPGC; 98.9 1.3E-08 4.6E-13 83.4 12.7 126 11-160 9-134 (151)
119 4gco_A Protein STI-1; structur 98.9 1.5E-08 5E-13 80.6 12.1 111 77-207 12-122 (126)
120 4f3v_A ESX-1 secretion system 98.9 2.8E-09 9.7E-14 95.7 8.3 212 54-273 19-244 (282)
121 3gyz_A Chaperone protein IPGC; 98.9 5.2E-09 1.8E-13 85.8 9.3 111 64-196 25-135 (151)
122 2vsy_A XCC0866; transferase, g 98.9 2.3E-08 7.9E-13 102.8 16.1 155 91-266 2-159 (568)
123 2ifu_A Gamma-SNAP; membrane fu 98.9 1.6E-08 5.6E-13 94.8 13.7 197 91-330 4-222 (307)
124 2vgx_A Chaperone SYCD; alterna 98.8 2E-08 6.8E-13 82.5 9.8 111 63-195 9-119 (148)
125 2e2e_A Formate-dependent nitri 98.8 5.3E-08 1.8E-12 82.9 12.6 123 53-197 22-147 (177)
126 1hh8_A P67PHOX, NCF-2, neutrop 98.8 4.5E-07 1.5E-11 79.7 19.0 125 377-506 10-149 (213)
127 1p5q_A FKBP52, FK506-binding p 98.8 7.1E-09 2.4E-13 98.4 7.7 162 55-227 127-292 (336)
128 3dss_A Geranylgeranyl transfer 98.8 1.4E-06 4.7E-11 80.7 22.7 136 55-213 44-192 (331)
129 2c2l_A CHIP, carboxy terminus 98.8 1.5E-08 5.1E-13 93.5 8.8 193 77-297 3-197 (281)
130 1a17_A Serine/threonine protei 98.8 1.5E-07 5.1E-12 79.0 14.4 121 48-190 20-142 (166)
131 3u3w_A Transcriptional activat 98.8 1.9E-06 6.3E-11 80.1 22.9 163 379-541 81-265 (293)
132 2c2l_A CHIP, carboxy terminus 98.8 4E-08 1.4E-12 90.7 11.2 194 130-332 4-199 (281)
133 2xcb_A PCRH, regulatory protei 98.7 3.3E-08 1.1E-12 80.7 9.1 99 77-194 17-115 (142)
134 1a17_A Serine/threonine protei 98.7 2.7E-07 9.2E-12 77.4 15.0 129 78-226 13-143 (166)
135 4f3v_A ESX-1 secretion system 98.7 6.1E-08 2.1E-12 87.1 11.2 201 80-302 9-240 (282)
136 2lni_A Stress-induced-phosphop 98.7 2.8E-07 9.6E-12 73.8 13.9 111 45-177 20-130 (133)
137 2lni_A Stress-induced-phosphop 98.7 2E-07 7E-12 74.7 13.0 120 75-214 13-132 (133)
138 2xcb_A PCRH, regulatory protei 98.7 9.6E-08 3.3E-12 77.9 11.0 110 31-161 8-117 (142)
139 2vyi_A SGTA protein; chaperone 98.7 2E-07 6.8E-12 74.4 12.5 110 48-179 19-128 (131)
140 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.8E-06 6.2E-11 75.8 19.5 125 343-472 11-150 (213)
141 2e2e_A Formate-dependent nitri 98.7 1.7E-07 5.9E-12 79.7 12.2 123 88-230 20-145 (177)
142 2qfc_A PLCR protein; TPR, HTH, 98.7 4.7E-06 1.6E-10 77.3 23.0 167 375-541 77-265 (293)
143 1na0_A Designed protein CTPR3; 98.7 6.3E-07 2.1E-11 70.7 14.7 113 78-210 9-121 (125)
144 2vyi_A SGTA protein; chaperone 98.7 5.5E-07 1.9E-11 71.7 14.3 120 77-216 11-130 (131)
145 1p5q_A FKBP52, FK506-binding p 98.7 1.6E-07 5.5E-12 89.0 12.8 134 41-193 147-293 (336)
146 3upv_A Heat shock protein STI1 98.7 2.5E-07 8.6E-12 73.5 12.1 93 47-160 10-102 (126)
147 3dss_A Geranylgeranyl transfer 98.7 5.9E-06 2E-10 76.5 22.6 172 87-280 38-237 (331)
148 2vgx_A Chaperone SYCD; alterna 98.7 2.8E-07 9.4E-12 75.6 12.4 104 37-161 17-120 (148)
149 1na0_A Designed protein CTPR3; 98.6 5.6E-07 1.9E-11 71.0 13.4 113 130-245 9-121 (125)
150 3u3w_A Transcriptional activat 98.6 1.5E-05 5E-10 74.0 25.0 92 238-329 158-263 (293)
151 2fbn_A 70 kDa peptidylprolyl i 98.6 5.9E-08 2E-12 84.4 7.6 164 55-228 18-185 (198)
152 3upv_A Heat shock protein STI1 98.6 4.5E-07 1.5E-11 72.0 12.2 100 77-195 3-102 (126)
153 2qfc_A PLCR protein; TPR, HTH, 98.6 1.2E-06 4.1E-11 81.4 16.8 173 78-262 75-264 (293)
154 3gw4_A Uncharacterized protein 98.6 3.5E-07 1.2E-11 79.7 11.9 156 89-262 3-174 (203)
155 3gw4_A Uncharacterized protein 98.6 8.3E-07 2.8E-11 77.2 14.2 156 386-542 5-176 (203)
156 4gcn_A Protein STI-1; structur 98.6 6E-07 2.1E-11 71.3 11.6 105 42-160 9-113 (127)
157 3sz7_A HSC70 cochaperone (SGT) 98.6 8E-07 2.7E-11 74.4 12.4 97 43-160 13-109 (164)
158 1hxi_A PEX5, peroxisome target 98.5 2.6E-07 9.1E-12 72.6 8.7 88 52-160 28-115 (121)
159 1elw_A TPR1-domain of HOP; HOP 98.5 2.4E-06 8.1E-11 66.5 14.3 108 78-205 4-111 (118)
160 4gcn_A Protein STI-1; structur 98.5 1.7E-06 5.9E-11 68.6 13.1 106 445-553 10-121 (127)
161 1elw_A TPR1-domain of HOP; HOP 98.5 2.2E-06 7.5E-11 66.7 13.7 107 45-173 8-114 (118)
162 1wao_1 Serine/threonine protei 98.5 5.2E-07 1.8E-11 89.8 11.9 120 48-189 13-134 (477)
163 2xev_A YBGF; tetratricopeptide 98.5 1.5E-06 5.2E-11 69.2 12.5 97 50-161 11-107 (129)
164 2kck_A TPR repeat; tetratricop 98.5 8.7E-07 3E-11 68.3 10.5 53 51-106 16-68 (112)
165 2fbn_A 70 kDa peptidylprolyl i 98.5 7.9E-07 2.7E-11 77.1 11.1 131 44-193 41-185 (198)
166 3sz7_A HSC70 cochaperone (SGT) 98.5 1.8E-06 6.1E-11 72.2 12.6 102 77-197 10-111 (164)
167 1hxi_A PEX5, peroxisome target 98.5 9.5E-07 3.2E-11 69.4 10.0 96 81-195 20-115 (121)
168 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 1.6E-07 5.5E-12 93.1 6.8 161 55-226 248-412 (457)
169 2dba_A Smooth muscle cell asso 98.5 3.6E-06 1.2E-10 68.7 13.9 100 43-160 30-129 (148)
170 2dba_A Smooth muscle cell asso 98.4 4.9E-06 1.7E-10 67.9 14.2 117 76-209 26-142 (148)
171 3k9i_A BH0479 protein; putativ 98.4 4.1E-07 1.4E-11 71.1 7.0 90 54-161 3-92 (117)
172 3q49_B STIP1 homology and U bo 98.4 3.7E-06 1.3E-10 67.6 13.0 99 77-194 8-106 (137)
173 2xev_A YBGF; tetratricopeptide 98.4 6.2E-06 2.1E-10 65.5 13.6 100 80-195 4-106 (129)
174 3q49_B STIP1 homology and U bo 98.4 3.2E-06 1.1E-10 68.0 12.0 100 40-160 8-107 (137)
175 1dce_A Protein (RAB geranylger 98.4 7.2E-06 2.5E-10 83.1 17.0 179 49-251 37-242 (567)
176 2kck_A TPR repeat; tetratricop 98.4 6.6E-06 2.2E-10 63.2 12.5 103 127-230 3-107 (112)
177 1elr_A TPR2A-domain of HOP; HO 98.3 2.7E-06 9.2E-11 67.7 9.9 100 78-195 4-109 (131)
178 1elr_A TPR2A-domain of HOP; HO 98.3 1.1E-05 3.7E-10 64.1 13.4 111 444-557 5-121 (131)
179 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 3.2E-06 1.1E-10 83.8 11.2 131 43-192 270-413 (457)
180 2if4_A ATFKBP42; FKBP-like, al 98.3 2.5E-06 8.4E-11 80.9 10.0 146 43-228 181-327 (338)
181 4b4t_Q 26S proteasome regulato 98.3 6.7E-05 2.3E-09 73.9 20.7 195 136-330 10-243 (434)
182 2hr2_A Hypothetical protein; a 98.3 4.6E-06 1.6E-10 67.4 9.4 102 47-159 17-131 (159)
183 4b4t_Q 26S proteasome regulato 98.3 7.2E-05 2.5E-09 73.7 20.2 197 310-506 11-244 (434)
184 1wao_1 Serine/threonine protei 98.2 8.5E-07 2.9E-11 88.3 6.0 124 81-224 9-134 (477)
185 3rkv_A Putative peptidylprolyl 98.2 5.6E-06 1.9E-10 69.0 10.0 101 44-162 14-129 (162)
186 3rkv_A Putative peptidylprolyl 98.2 7.9E-06 2.7E-10 68.0 10.5 112 78-197 11-129 (162)
187 1ihg_A Cyclophilin 40; ppiase 98.2 1.2E-05 4E-10 77.1 12.3 138 78-220 223-361 (370)
188 1ihg_A Cyclophilin 40; ppiase 98.2 5.5E-06 1.9E-10 79.4 9.9 120 44-185 226-361 (370)
189 3ro3_A PINS homolog, G-protein 98.2 1.5E-05 5.2E-10 66.0 11.3 133 410-542 11-158 (164)
190 3n71_A Histone lysine methyltr 98.2 1.4E-05 4.9E-10 78.9 12.4 133 51-193 319-463 (490)
191 3k9i_A BH0479 protein; putativ 98.1 4.8E-06 1.6E-10 64.9 7.3 91 90-196 2-92 (117)
192 2kat_A Uncharacterized protein 98.1 1.2E-05 4E-10 62.4 8.9 82 58-160 2-83 (115)
193 1dce_A Protein (RAB geranylger 98.1 0.00012 4E-09 74.3 18.5 173 92-286 43-242 (567)
194 3ro3_A PINS homolog, G-protein 98.1 2E-05 6.8E-10 65.2 10.3 97 131-227 10-116 (164)
195 2if4_A ATFKBP42; FKBP-like, al 98.1 1E-05 3.6E-10 76.5 9.5 149 78-264 179-328 (338)
196 2hr2_A Hypothetical protein; a 98.0 3.6E-05 1.2E-09 62.2 10.4 109 79-194 12-131 (159)
197 1zu2_A Mitochondrial import re 98.0 1.7E-05 5.9E-10 63.9 7.9 94 55-171 16-130 (158)
198 1klx_A Cysteine rich protein B 98.0 0.00014 4.8E-09 58.3 13.5 112 422-544 9-128 (138)
199 2l6j_A TPR repeat-containing p 97.9 1.3E-05 4.5E-10 61.5 4.8 97 44-155 7-103 (111)
200 1na3_A Designed protein CTPR2; 97.8 0.00011 3.8E-09 53.7 9.1 80 78-176 9-88 (91)
201 1na3_A Designed protein CTPR2; 97.8 0.00013 4.5E-09 53.3 9.5 82 129-212 8-89 (91)
202 2l6j_A TPR repeat-containing p 97.8 8.1E-05 2.8E-09 56.9 8.6 89 78-185 4-98 (111)
203 3ma5_A Tetratricopeptide repea 97.8 9.8E-05 3.3E-09 55.4 8.5 65 77-159 6-70 (100)
204 1klx_A Cysteine rich protein B 97.8 0.0011 3.8E-08 53.0 14.7 111 387-508 9-127 (138)
205 2kat_A Uncharacterized protein 97.7 0.00044 1.5E-08 53.2 11.2 79 462-542 4-82 (115)
206 3n71_A Histone lysine methyltr 97.7 0.00049 1.7E-08 68.0 13.6 125 418-542 319-464 (490)
207 1zu2_A Mitochondrial import re 97.7 0.00013 4.3E-09 58.9 7.7 101 456-561 15-137 (158)
208 3qww_A SET and MYND domain-con 97.5 0.00038 1.3E-08 67.5 10.7 96 53-158 310-410 (433)
209 3ma5_A Tetratricopeptide repea 97.5 0.00023 8E-09 53.2 7.3 67 38-107 4-70 (100)
210 2kc7_A BFR218_protein; tetratr 97.3 0.00015 5.2E-09 54.1 3.7 54 53-109 12-66 (99)
211 3qwp_A SET and MYND domain-con 97.1 0.0015 5E-08 63.6 9.1 105 43-158 290-399 (429)
212 1pc2_A Mitochondria fission pr 97.1 0.0032 1.1E-07 50.1 9.1 87 57-162 14-103 (152)
213 3bee_A Putative YFRE protein; 97.0 0.0029 9.9E-08 46.2 8.0 52 56-110 24-75 (93)
214 3ly7_A Transcriptional activat 97.0 0.0051 1.7E-07 57.2 11.0 130 55-203 213-346 (372)
215 3ly7_A Transcriptional activat 97.0 0.014 4.7E-07 54.3 13.7 74 232-307 274-347 (372)
216 3bee_A Putative YFRE protein; 97.0 0.0061 2.1E-07 44.5 9.2 67 77-161 5-74 (93)
217 2kc7_A BFR218_protein; tetratr 96.9 0.0048 1.6E-07 45.6 8.6 62 83-162 5-67 (99)
218 1pc2_A Mitochondria fission pr 96.8 0.015 5.2E-07 46.3 11.0 83 459-543 14-101 (152)
219 3qww_A SET and MYND domain-con 96.8 0.0036 1.2E-07 60.7 8.9 86 456-541 311-410 (433)
220 3qwp_A SET and MYND domain-con 96.7 0.007 2.4E-07 58.8 10.2 90 452-541 296-399 (429)
221 3u64_A Protein TP_0956; tetrat 96.7 0.1 3.6E-06 46.4 16.2 86 182-267 180-272 (301)
222 4h7y_A Dual specificity protei 96.5 0.075 2.6E-06 41.6 12.4 118 76-207 11-135 (161)
223 3lvg_A Clathrin heavy chain 1; 96.5 6.3E-06 2.1E-10 77.7 -12.2 214 77-328 53-287 (624)
224 3lvg_A Clathrin heavy chain 1; 96.4 4.4E-05 1.5E-09 72.1 -7.2 411 45-534 58-533 (624)
225 2v5f_A Prolyl 4-hydroxylase su 96.3 0.021 7E-07 42.7 8.3 75 77-162 4-78 (104)
226 3u64_A Protein TP_0956; tetrat 96.1 0.032 1.1E-06 49.7 9.6 97 57-171 179-283 (301)
227 3mkq_A Coatomer beta'-subunit; 96.0 0.41 1.4E-05 51.0 20.4 28 407-434 680-707 (814)
228 2v5f_A Prolyl 4-hydroxylase su 96.0 0.073 2.5E-06 39.6 10.4 67 477-543 4-76 (104)
229 1nzn_A CGI-135 protein, fissio 95.9 0.052 1.8E-06 41.5 8.8 87 57-162 17-106 (126)
230 3mkq_A Coatomer beta'-subunit; 95.8 0.21 7.3E-06 53.2 17.0 154 349-541 610-764 (814)
231 1wy6_A Hypothetical protein ST 95.8 0.44 1.5E-05 36.5 13.7 68 477-545 90-157 (172)
232 3mkq_B Coatomer subunit alpha; 95.6 0.75 2.6E-05 37.6 16.2 129 138-296 13-141 (177)
233 4fhn_B Nucleoporin NUP120; pro 95.4 0.8 2.7E-05 50.8 19.6 155 55-218 826-989 (1139)
234 1nzn_A CGI-135 protein, fissio 95.3 0.25 8.7E-06 37.7 10.6 84 458-543 16-104 (126)
235 4h7y_A Dual specificity protei 95.2 0.2 6.7E-06 39.3 9.7 55 491-546 73-127 (161)
236 4b4t_P 26S proteasome regulato 94.9 3.1 0.00011 40.4 19.9 49 249-297 30-83 (445)
237 3mkq_B Coatomer subunit alpha; 94.8 1.4 4.7E-05 36.0 17.3 98 384-502 16-113 (177)
238 4ady_A RPN2, 26S proteasome re 94.8 5 0.00017 42.5 35.7 153 383-541 500-657 (963)
239 4b4t_P 26S proteasome regulato 94.7 2.3 7.8E-05 41.3 18.6 49 284-332 30-85 (445)
240 4gns_B Protein CSD3, chitin bi 94.4 1.8 6.2E-05 44.7 17.5 144 37-192 244-398 (754)
241 1wy6_A Hypothetical protein ST 94.2 1.4 4.9E-05 33.8 15.3 140 246-405 18-157 (172)
242 2ff4_A Probable regulatory pro 93.1 2.5 8.6E-05 40.1 15.1 72 133-205 174-250 (388)
243 1v54_E Cytochrome C oxidase po 92.5 0.62 2.1E-05 33.5 7.2 63 493-556 25-87 (109)
244 3o48_A Mitochondria fission 1 92.2 1.6 5.5E-05 33.5 9.8 71 473-543 35-108 (134)
245 2nsz_A Programmed cell death p 92.2 1.6 5.3E-05 33.7 10.1 107 481-588 10-128 (129)
246 2wpv_A GET4, UPF0363 protein Y 92.1 6.7 0.00023 35.6 20.4 82 85-213 20-105 (312)
247 1y8m_A FIS1; mitochondria, unk 92.1 3.4 0.00012 32.1 13.7 69 475-543 36-107 (144)
248 1y8m_A FIS1; mitochondria, unk 91.5 4 0.00014 31.7 11.9 70 76-162 37-109 (144)
249 2ff4_A Probable regulatory pro 90.8 1.6 5.5E-05 41.5 10.8 71 481-552 174-249 (388)
250 4fhn_B Nucleoporin NUP120; pro 90.6 11 0.00036 41.9 18.5 128 238-365 902-1048(1139)
251 4gns_B Protein CSD3, chitin bi 90.5 6 0.0002 41.0 15.1 128 82-227 252-398 (754)
252 3ffl_A Anaphase-promoting comp 89.5 0.91 3.1E-05 36.4 6.5 115 43-159 23-151 (167)
253 2y69_E Cytochrome C oxidase su 89.1 3.5 0.00012 31.5 8.8 63 494-557 69-131 (152)
254 3lpz_A GET4 (YOR164C homolog); 88.7 14 0.00048 33.7 21.2 83 85-214 19-108 (336)
255 1v54_E Cytochrome C oxidase po 88.5 3 0.0001 30.0 7.7 49 459-507 26-74 (109)
256 3o48_A Mitochondria fission 1 88.1 4.8 0.00016 30.9 9.3 71 232-302 37-110 (134)
257 4b4t_R RPN7, 26S proteasome re 88.0 1.3 4.3E-05 42.9 7.9 102 78-194 131-237 (429)
258 3ffl_A Anaphase-promoting comp 86.8 4.1 0.00014 32.7 8.7 64 130-193 20-91 (167)
259 3eiq_C Programmed cell death p 86.6 8.4 0.00029 35.7 12.0 107 480-587 219-337 (358)
260 4ady_A RPN2, 26S proteasome re 86.3 38 0.0013 36.0 37.3 267 243-524 382-672 (963)
261 1qsa_A Protein (soluble lytic 86.0 31 0.0011 34.9 36.9 315 14-366 10-347 (618)
262 3kae_A CDC27, possible protein 84.8 6.3 0.00022 31.5 8.6 137 12-159 4-143 (242)
263 1zbp_A Hypothetical protein VP 84.5 11 0.00036 33.1 10.9 55 53-110 9-63 (273)
264 2ion_A PDCD4, programmed cell 83.7 7 0.00024 31.1 8.8 105 481-586 12-128 (152)
265 2y69_E Cytochrome C oxidase su 83.7 12 0.00041 28.7 9.3 60 460-520 70-129 (152)
266 2zu6_B Programmed cell death p 81.3 31 0.0011 31.2 13.1 106 480-586 168-285 (307)
267 4b4t_R RPN7, 26S proteasome re 80.2 18 0.00061 34.8 12.1 61 132-192 133-195 (429)
268 2wpv_A GET4, UPF0363 protein Y 78.6 38 0.0013 30.6 24.4 166 273-470 36-215 (312)
269 3lpz_A GET4 (YOR164C homolog); 77.0 44 0.0015 30.5 23.5 166 274-471 39-215 (336)
270 3eiq_C Programmed cell death p 75.4 26 0.00088 32.5 11.0 69 515-584 219-291 (358)
271 1qsa_A Protein (soluble lytic 75.1 74 0.0025 32.2 31.5 248 136-401 78-347 (618)
272 3txn_A 26S proteasome regulato 73.3 62 0.0021 30.5 27.6 294 272-578 21-346 (394)
273 2p58_C Putative type III secre 73.3 22 0.00075 25.5 7.4 79 457-543 21-99 (116)
274 3txn_A 26S proteasome regulato 70.7 71 0.0024 30.0 24.0 240 305-549 21-290 (394)
275 4gq2_M Nucleoporin NUP120; bet 68.4 31 0.0011 37.2 11.4 45 54-105 823-867 (950)
276 2uwj_G Type III export protein 68.0 21 0.00073 25.6 6.5 87 491-583 19-105 (115)
277 4fn6_A Thiaminase-2, thiaminas 67.6 45 0.0016 28.5 10.3 61 513-575 157-218 (229)
278 3esl_A Checkpoint serine/threo 67.0 54 0.0019 27.3 11.9 56 492-547 93-149 (202)
279 1zbp_A Hypothetical protein VP 66.9 23 0.00077 31.1 8.0 57 245-302 7-63 (273)
280 4b4t_S RPN3, 26S proteasome re 64.8 78 0.0027 31.0 12.1 143 78-229 134-299 (523)
281 3esl_A Checkpoint serine/threo 62.8 66 0.0023 26.8 10.5 56 316-371 92-148 (202)
282 2ijq_A Hypothetical protein; s 61.9 39 0.0014 26.9 7.9 65 82-158 36-103 (161)
283 3no6_A Transcriptional activat 61.9 40 0.0014 29.4 8.9 61 513-575 176-237 (248)
284 4b4t_S RPN3, 26S proteasome re 59.9 55 0.0019 32.0 10.0 70 79-161 232-301 (523)
285 2nsz_A Programmed cell death p 57.8 37 0.0013 25.9 7.0 69 515-584 9-81 (129)
286 2cwy_A Hypothetical protein TT 53.4 42 0.0014 23.9 6.2 61 84-158 7-67 (94)
287 4aez_C MAD3, mitotic spindle c 53.2 60 0.0021 27.5 8.0 84 57-163 100-183 (223)
288 3ibx_A TENA, HP1287, putative 53.2 52 0.0018 28.0 8.1 60 513-573 159-219 (221)
289 1k1a_A B-cell lymphoma 3-encod 53.0 81 0.0028 26.7 9.7 21 140-160 16-36 (241)
290 3mv2_A Coatomer subunit alpha; 51.8 1.4E+02 0.0047 27.0 13.0 110 83-197 119-239 (325)
291 2ion_A PDCD4, programmed cell 50.6 49 0.0017 26.1 6.8 69 515-584 11-83 (152)
292 2rg8_A Programmed cell death p 50.3 62 0.0021 26.0 7.5 23 483-505 15-37 (165)
293 2d2s_A Exocyst complex compone 48.2 67 0.0023 27.6 7.9 88 136-226 24-117 (235)
294 1wdy_A 2-5A-dependent ribonucl 47.6 57 0.002 28.5 8.0 23 172-198 43-65 (285)
295 1wdy_A 2-5A-dependent ribonucl 46.1 55 0.0019 28.6 7.6 7 175-181 12-18 (285)
296 2d2s_A Exocyst complex compone 43.4 1.5E+02 0.0051 25.4 9.3 90 414-506 24-119 (235)
297 2wvi_A Mitotic checkpoint seri 43.1 1.3E+02 0.0043 24.1 9.7 54 497-550 79-133 (164)
298 3jxi_A Vanilloid receptor-rela 41.2 23 0.0008 30.8 4.2 53 174-226 11-72 (260)
299 2qcx_A Transcriptional activat 40.9 1.1E+02 0.0037 26.9 8.3 61 511-575 179-242 (263)
300 3l6a_A Eukaryotic translation 40.8 1.4E+02 0.0048 27.7 9.4 26 445-470 14-39 (364)
301 2keb_A DNA polymerase subunit 40.3 98 0.0034 22.0 6.6 56 497-554 28-88 (101)
302 2fe3_A Peroxide operon regulat 39.9 1.1E+02 0.0037 23.8 7.4 46 504-550 13-58 (145)
303 2fu4_A Ferric uptake regulatio 39.7 86 0.003 21.2 6.2 58 503-561 7-65 (83)
304 4a1g_A Mitotic checkpoint seri 38.6 1.4E+02 0.0049 23.4 10.2 50 322-371 84-134 (152)
305 1k1a_A B-cell lymphoma 3-encod 38.2 1.3E+02 0.0045 25.3 8.6 21 210-230 16-36 (241)
306 3bu8_A Telomeric repeat-bindin 36.0 1.9E+02 0.0066 24.2 9.3 57 94-160 88-144 (235)
307 4a1g_A Mitotic checkpoint seri 35.5 1.6E+02 0.0055 23.1 10.2 53 497-549 84-137 (152)
308 1bpo_A Protein (clathrin); cla 34.7 2.5E+02 0.0085 27.0 9.8 57 55-117 343-399 (494)
309 2xig_A Ferric uptake regulatio 34.4 1.6E+02 0.0056 22.9 7.8 46 504-550 18-63 (150)
310 3mkr_B Coatomer subunit alpha; 34.3 2.6E+02 0.009 25.2 9.9 111 82-197 106-230 (320)
311 1mzb_A Ferric uptake regulatio 34.0 1.1E+02 0.0039 23.3 6.6 36 493-528 33-68 (136)
312 3eyy_A Putative iron uptake re 33.6 1.1E+02 0.0037 23.8 6.4 44 504-549 10-53 (145)
313 2wvi_A Mitotic checkpoint seri 32.3 1.9E+02 0.0066 23.1 10.1 51 322-372 79-130 (164)
314 2gm8_A TENA homolog/THI-4 thia 31.4 2.2E+02 0.0075 24.0 8.6 58 511-574 162-219 (221)
315 2fe3_A Peroxide operon regulat 30.5 1.9E+02 0.0063 22.4 7.3 59 156-215 13-71 (145)
316 3kea_A K1L; tropism, ANK repea 30.0 1.6E+02 0.0054 25.9 7.8 13 211-223 103-115 (285)
317 2ijq_A Hypothetical protein; s 29.9 2.1E+02 0.0072 22.8 8.7 49 352-400 46-102 (161)
318 3oql_A TENA homolog; transcrip 29.1 2.9E+02 0.0099 24.1 10.9 62 513-576 185-248 (262)
319 3eu9_A Huntingtin-interacting 28.9 1.8E+02 0.0063 24.2 7.9 11 89-99 17-27 (240)
320 1bpo_A Protein (clathrin); cla 28.8 3.9E+02 0.013 25.7 10.0 93 127-221 358-450 (494)
321 1mzb_A Ferric uptake regulatio 27.2 1.9E+02 0.0064 22.0 6.8 59 156-215 9-68 (136)
322 1n11_A Ankyrin; clathrin, BAND 26.8 2.1E+02 0.007 27.1 8.6 13 535-547 359-371 (437)
323 1ug3_A EIF4GI, eukaryotic prot 26.7 58 0.002 30.0 4.3 25 446-470 14-38 (339)
324 2zu6_B Programmed cell death p 26.6 1.3E+02 0.0046 27.0 6.5 68 516-584 169-240 (307)
325 2xig_A Ferric uptake regulatio 26.3 2.3E+02 0.0079 22.0 8.1 61 155-216 17-77 (150)
326 4gq2_M Nucleoporin NUP120; bet 26.1 2.5E+02 0.0085 30.2 9.6 46 514-559 898-947 (950)
327 1rtw_A Transcriptional activat 25.9 1.3E+02 0.0043 25.5 6.0 57 515-574 148-207 (220)
328 3hra_A Ankyrin repeat family p 25.4 1.5E+02 0.0051 24.0 6.5 13 281-293 80-92 (201)
329 3ygs_P Procaspase 9; apoptosis 25.0 1.2E+02 0.004 21.6 4.7 36 145-184 52-87 (97)
330 2o03_A Probable zinc uptake re 24.2 1.5E+02 0.0052 22.4 5.6 46 240-285 15-60 (131)
331 4ets_A Ferric uptake regulatio 24.0 1.5E+02 0.0053 23.5 5.8 59 226-285 24-84 (162)
332 3t5v_B Nuclear mRNA export pro 23.9 2.2E+02 0.0075 27.4 7.8 68 82-159 180-249 (455)
333 2w57_A Ferric uptake regulatio 23.6 2.1E+02 0.0071 22.3 6.4 60 156-216 8-68 (150)
334 1wgl_A TOLL-interacting protei 23.5 1E+02 0.0034 19.6 3.6 23 142-164 35-57 (59)
335 3eyy_A Putative iron uptake re 23.2 1.9E+02 0.0064 22.4 6.1 58 156-215 10-67 (145)
336 2w57_A Ferric uptake regulatio 23.0 2.1E+02 0.0071 22.3 6.3 35 250-284 32-66 (150)
337 3pvs_A Replication-associated 22.6 5.1E+02 0.017 24.7 13.9 152 388-541 166-358 (447)
338 3mwm_A ZUR, putative metal upt 22.5 1.3E+02 0.0046 23.1 5.1 46 240-285 18-63 (139)
339 3bqo_A Telomeric repeat-bindin 22.5 2.3E+02 0.0079 23.4 6.3 24 136-159 123-146 (211)
340 3rm5_A Hydroxymethylpyrimidine 22.3 1.1E+02 0.0037 30.5 5.5 61 514-575 488-549 (550)
341 2o03_A Probable zinc uptake re 22.2 1.5E+02 0.0053 22.3 5.3 30 520-549 17-46 (131)
342 3mv2_A Coatomer subunit alpha; 22.1 4.4E+02 0.015 23.8 11.5 51 494-544 186-238 (325)
343 3l6a_A Eukaryotic translation 21.7 2.6E+02 0.0088 25.9 7.6 82 480-565 14-100 (364)
344 3ltm_A Alpha-REP4; protein eng 21.5 3.3E+02 0.011 22.2 20.3 141 164-318 32-172 (211)
345 1rw2_A ATP-dependent DNA helic 21.3 87 0.003 24.7 3.7 49 528-577 73-125 (152)
346 3kea_A K1L; tropism, ANK repea 20.4 2.1E+02 0.0071 25.1 6.7 17 207-223 66-82 (285)
347 3mvu_A TENA family transcripti 20.4 2.7E+02 0.0093 23.5 7.1 58 515-573 160-224 (226)
348 1ug3_A EIF4GI, eukaryotic prot 20.3 1.5E+02 0.0051 27.2 5.7 64 481-545 14-78 (339)
349 4g8k_A 2-5A-dependent ribonucl 20.3 4.6E+02 0.016 23.4 10.0 13 535-547 316-328 (337)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4e-39 Score=336.36 Aligned_cols=453 Identities=11% Similarity=0.012 Sum_probs=291.7
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+...+..++..+.+.|++++|+.+|+++....+ +...+..++.+|.+.|++++|+.+|+++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 143 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITG-------------------NPNDAFWLAQVYCCTGDYARAKCLLTKE 143 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCC-------------------CchHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 455566677777777777777777777664321 1134555667777777777777777776
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHccCChhhHHH
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQL---------------GVVANIHLYNVLIHACCKSSDVDKVEK 221 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~ll~~~~~~g~~~~a~~ 221 (591)
... .++..+++.++.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.+
T Consensus 144 ~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 221 (597)
T 2xpi_A 144 DLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKE 221 (597)
T ss_dssp CGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHH
Confidence 544 346667777777777777777777777643221 123346677777777777777777777
Q ss_pred HHHHHhhCCCCcCcccHHHH--------------------------------------HHHHHhcCChhHHHHHHHHHHH
Q 048533 222 LLCEMEFKDVRADLFTYNTL--------------------------------------IALYCKKGMHYEALAVQDRMER 263 (591)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l--------------------------------------i~~~~~~g~~~~a~~~~~~~~~ 263 (591)
+|+++...+ +.+...+..+ +..|.+.|++++|.++|+++.+
T Consensus 222 ~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 300 (597)
T 2xpi_A 222 CYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING 300 (597)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhc
Confidence 777776653 1223333333 4445556667777777766665
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048533 264 EGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATP-NHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYN 342 (591)
Q Consensus 264 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 342 (591)
. +++..+++.++..|.+.|++++|.++|+++.+..| +..++..++.++.+.|++++|..+++.+.+.. +.+..++.
T Consensus 301 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 377 (597)
T 2xpi_A 301 L--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWL 377 (597)
T ss_dssp G--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHH
T ss_pred C--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHH
Confidence 4 45666777777777777777777777777655333 45666777777777777777777777766442 33566666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048533 343 SILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAK 422 (591)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 422 (591)
.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|
T Consensus 378 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 455 (597)
T 2xpi_A 378 AVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLG 455 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcC
Confidence 67777777777777777777766542 2255667777777777777777777777766654 235666667777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHH
Q 048533 423 EMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSR----GLCVD--VSVYRALIRRFCKKEKVDY 496 (591)
Q Consensus 423 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~ 496 (591)
++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++
T Consensus 456 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 534 (597)
T 2xpi_A 456 NILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA 534 (597)
T ss_dssp CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHH
Confidence 7777777777776543 335666777777777777777777777776654 44455 5667777777777777777
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhh
Q 048533 497 AQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYA 559 (591)
Q Consensus 497 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 559 (591)
|.++++++.+.+ +.+..+|..++.+|.+.|++++|.+.|+++.+.... +...+..+..+|.
T Consensus 535 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 535 AIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN-EIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHh
Confidence 777777766643 335666777777777777777777777777765432 4555555555553
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-38 Score=330.68 Aligned_cols=447 Identities=11% Similarity=-0.036 Sum_probs=389.4
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 129 NSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIH 208 (591)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 208 (591)
+...+..++..|.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|..+|+.+... +++..+++.++.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 158 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAF 158 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHH
Confidence 3456788999999999999999999999864 567789999999999999999999999998653 568899999999
Q ss_pred HHHccCChhhHHHHHHHHhhC---------------CCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 048533 209 ACCKSSDVDKVEKLLCEMEFK---------------DVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTY 273 (591)
Q Consensus 209 ~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 273 (591)
+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.+.|+++.+.+.. +...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHH
Confidence 999999999999999954322 23456899999999999999999999999999886432 33333
Q ss_pred HHH--------------------------------------HHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 048533 274 NSL--------------------------------------IHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCR 315 (591)
Q Consensus 274 ~~l--------------------------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~ 315 (591)
..+ +..|.+.|++++|.++|+++.+..++..+++.++.+|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 333 445667899999999999998766889999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 048533 316 ANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKV 395 (591)
Q Consensus 316 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 395 (591)
.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..++..++.+|.+.|++++|.++
T Consensus 318 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999999865 3377789999999999999999999999998753 45788999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048533 396 KNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLC 475 (591)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 475 (591)
|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+..+.
T Consensus 396 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 473 (597)
T 2xpi_A 396 FSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY 473 (597)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99998864 3468899999999999999999999999999865 457889999999999999999999999999987544
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCcC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 048533 476 VDVSVYRALIRRFCKKEKVDYAQRLFNLMQGN----GILGD--SVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLK 549 (591)
Q Consensus 476 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 549 (591)
++.+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.++.
T Consensus 474 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~ 551 (597)
T 2xpi_A 474 -DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDAN 551 (597)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHH
T ss_pred -ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChH
Confidence 8999999999999999999999999999875 66777 6899999999999999999999999999976 34788
Q ss_pred HHHHHHHhhhcchhHHHH--HHHHHHhcCCCChHHHHHH
Q 048533 550 IYRSFSASYAKDNEILDL--FWSHVVDRGLMSKHIFKEM 586 (591)
Q Consensus 550 ~~~~li~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 586 (591)
+|..+..+|.+.|+..++ +++++.+.+.-....+..+
T Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 590 (597)
T 2xpi_A 552 VHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLL 590 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 999999999999998875 5777777766666555443
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=9.9e-29 Score=242.98 Aligned_cols=356 Identities=10% Similarity=-0.006 Sum_probs=207.3
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccch
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHV 132 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (591)
+.|++++|+..|+.+.+..|+ +..++..++.++.+.|++++|...++.+.+.+ |.+..+
T Consensus 11 ~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~------------------p~~~~~ 69 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQEPD---NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN------------------PLLAEA 69 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------------CCchHH
Confidence 347777788877777776666 66666777777777777777777777776643 334456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCK 212 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 212 (591)
+..++..|.+.|++++|+..|+++.+.++. +..+|..+..++.+.|++++|.+.|+++.+.++. +...+..+...+..
T Consensus 70 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 147 (388)
T 1w3b_A 70 YSNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKA 147 (388)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 667777777777777777777777766543 5556777777777777777777777777665433 44555566666666
Q ss_pred cCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048533 213 SSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRL 292 (591)
Q Consensus 213 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 292 (591)
.|++++|.+.|+++.... +.+..+|..+...+...|++++|...|+++.+.+. .+...+..+...+...|++++|...
T Consensus 148 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~ 225 (388)
T 1w3b_A 148 LGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAA 225 (388)
T ss_dssp TSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 677777777776666542 23455666666666666666666666666665432 1345555556666666666666666
Q ss_pred HHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048533 293 FRDIKGATPN-HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAP 371 (591)
Q Consensus 293 ~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 371 (591)
+++.....|+ ..++..+...+...|++++|.+.|+++.+.+ +.+..++..+...+.+.|++++|...++++.+.. +.
T Consensus 226 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 303 (388)
T 1w3b_A 226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PT 303 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cc
Confidence 6555543333 4455555555555555555555555555542 1134444555555555555555555555544431 22
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048533 372 DNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLD 436 (591)
Q Consensus 372 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 436 (591)
+..++..+...+.+.|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++++
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444444444444444444444332 12234444444444444444444444444443
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.4e-28 Score=240.17 Aligned_cols=381 Identities=14% Similarity=0.017 Sum_probs=195.8
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccC
Q 048533 85 IHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPH 164 (591)
Q Consensus 85 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 164 (591)
+..+.+.|++++|++.++.+.+.. |.+..++..+...+.+.|++++|...++...+.++. +
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~------------------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~-~ 66 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE------------------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-L 66 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-c
Confidence 344445555555555555554432 222333444444555555555555555555544332 4
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHH
Q 048533 165 LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIAL 244 (591)
Q Consensus 165 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 244 (591)
..+|..+..++.+.|++++|+..|+++.+..+. +...|..+..++.+.|++++|.+.|+++...+ +.+...+..+...
T Consensus 67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 144 (388)
T 1w3b_A 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNL 144 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 445555555555555555555555555444322 33344445555555555555555555544432 1223334444444
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHH
Q 048533 245 YCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPN-HVTYTTLIDGYCRANDLEEAL 323 (591)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~ 323 (591)
+...|++++|.+.|+++.+. .|+ ..+|..+...+...|++++|.
T Consensus 145 ~~~~g~~~~A~~~~~~al~~-----------------------------------~p~~~~~~~~l~~~~~~~g~~~~A~ 189 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAIET-----------------------------------QPNFAVAWSNLGCVFNAQGEIWLAI 189 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHH-----------------------------------CTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh-----------------------------------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 44445555555544444443 332 344444444555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 048533 324 RLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAG 403 (591)
Q Consensus 324 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 403 (591)
..|+++.+.+ +.+...+..+...+...|++++|...+++..+.. +.+..++..+...+.+.|++++|...++++.+..
T Consensus 190 ~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 267 (388)
T 1w3b_A 190 HHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5555544432 1234444555555555555555555555554432 1234455555555555555555555555555543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 404 LMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRA 483 (591)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 483 (591)
+.+..++..+...+.+.|++++|...++++++.. +.+..++..+...+...|++++|...++++.+..+ .+..++..
T Consensus 268 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~ 344 (388)
T 1w3b_A 268 -PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSN 344 (388)
T ss_dssp -SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHH
Confidence 1234555566666666666666666666665543 34555666666666666666666666666665432 24556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcC
Q 048533 484 LIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAG 527 (591)
Q Consensus 484 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 527 (591)
++..+.+.|++++|...|+++.+.. +.+...|..+..++...|
T Consensus 345 l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 345 LASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence 6666666666666666666666531 223456666666665554
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3.7e-29 Score=249.57 Aligned_cols=206 Identities=13% Similarity=0.199 Sum_probs=150.5
Q ss_pred HHHHHHHHHhCCCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------HHH
Q 048533 357 ANRLLNEMNEKKIAPDN-VTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKE---------MDI 426 (591)
Q Consensus 357 a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~ 426 (591)
+..+.+.+.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.|+.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34444455555444333 24566666666666666666666666666666666666666666665443 677
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 427 AKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQG 506 (591)
Q Consensus 427 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 506 (591)
|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcch
Q 048533 507 NGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDN 562 (591)
Q Consensus 507 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 562 (591)
.|+.||..+|+.|+.+|++.|+.++|.+++++|.+.|..|+..||+.++..|+..+
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 88888888888888888888888888888888888888888888888888887654
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2.3e-28 Score=243.83 Aligned_cols=186 Identities=19% Similarity=0.235 Sum_probs=104.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHhCCCCCChHH
Q 048533 305 TYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGR---------IRDANRLLNEMNEKKIAPDNVT 375 (591)
Q Consensus 305 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 375 (591)
.++.+|++|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.+. +++|.++|++|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 3555556666666666666666666666666666666666666554432 3455555555555555555555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048533 376 CNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCN 455 (591)
Q Consensus 376 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (591)
|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048533 456 KNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCK 490 (591)
Q Consensus 456 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 490 (591)
.|+.++|.+++++|.+.+..|+..||+.++..|..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555443
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.9e-25 Score=224.21 Aligned_cols=439 Identities=8% Similarity=-0.077 Sum_probs=321.5
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
...+...+..+.+.|++++|+..|+++...++ +..++..++.+|.+.|++++|+..++++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al 66 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-------------------DPVFYSNLSACYVSVGDLKKVVEMSTKAL 66 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-------------------cHHHHHhHHHHHHHHhhHHHHHHHHHHHh
Confidence 45677889999999999999999999988652 34567778889999999999999999999
Q ss_pred hCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCccc
Q 048533 158 VHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFT 237 (591)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 237 (591)
+.++. +..++..+..++...|++++|...|+.+.+.+.. +......++..+........+.+.+..+...+..|+...
T Consensus 67 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 144 (514)
T 2gw1_A 67 ELKPD-YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELS 144 (514)
T ss_dssp HHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------
T ss_pred ccChH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 88765 7788999999999999999999999999887653 444444455444443333333333322222111111111
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHhhc-----C-
Q 048533 238 YNTLIALYCKKGMHYEALAVQDRMEREGI---------SPDIVTYNSLIHGFCR---EGRMREARRLFRDIKG-----A- 299 (591)
Q Consensus 238 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~---------~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~- 299 (591)
+..................+...+..... +.+...+......+.. .|++++|...|+++.. .
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 224 (514)
T 2gw1_A 145 TQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLD 224 (514)
T ss_dssp ------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhc
Confidence 11111111111111111111111111111 1124455555555554 7999999999998876 3
Q ss_pred ---------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048533 300 ---------TPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIA 370 (591)
Q Consensus 300 ---------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 370 (591)
+.+..++..+...+...|++++|...++.+.+.+ |+...+..+...+...|++++|...++.+.+.. +
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 301 (514)
T 2gw1_A 225 KNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-S 301 (514)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-T
T ss_pred cCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-c
Confidence 2234567788889999999999999999998864 347788888999999999999999999998864 3
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 371 PDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLV 450 (591)
Q Consensus 371 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 450 (591)
.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 302 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 379 (514)
T 2gw1_A 302 NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFA 379 (514)
T ss_dssp TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHH
Confidence 4678899999999999999999999999988753 367788889999999999999999999998754 34567888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 048533 451 DGYCNKNNEEALLKLLDEFVSRGLC-VD----VSVYRALIRRFCK---KEKVDYAQRLFNLMQGNGILGDSVIYTSLAYA 522 (591)
Q Consensus 451 ~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 522 (591)
..+...|++++|...++++.+..+. ++ ..++..+...+.. .|++++|...++++.+.. +.+..++..+..+
T Consensus 380 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 458 (514)
T 2gw1_A 380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQM 458 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 9999999999999999998875322 11 3488899999999 999999999999998853 3356888999999
Q ss_pred HHHcCChhHHHHHHHHHHHCC
Q 048533 523 YWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 523 ~~~~g~~~~A~~~~~~~~~~~ 543 (591)
|.+.|++++|...|+++.+..
T Consensus 459 ~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 459 KLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhc
Confidence 999999999999999999965
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.5e-24 Score=221.65 Aligned_cols=436 Identities=9% Similarity=-0.089 Sum_probs=320.1
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcC
Q 048533 45 KVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHD 124 (591)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (591)
..++..+...|++++|+..|+.+++..| +..++..++.++.+.|++++|+..++++.+.+
T Consensus 10 ~~~g~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------- 69 (514)
T 2gw1_A 10 KDKGNQFFRNKKYDDAIKYYNWALELKE----DPVFYSNLSACYVSVGDLKKVVEMSTKALELK---------------- 69 (514)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCc----cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC----------------
Confidence 3445666677999999999999999876 48889999999999999999999999998865
Q ss_pred CCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 048533 125 DPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYN 204 (591)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 204 (591)
|.+..++..++.+|.+.|++++|+..|+++.+.++. +......++..+........+.+.+..+...+..|+...+.
T Consensus 70 --p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 146 (514)
T 2gw1_A 70 --PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQ 146 (514)
T ss_dssp --SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC-----------------
T ss_pred --hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Confidence 445577888999999999999999999999998753 54555555555554443444444443332222222221111
Q ss_pred HHHHHHHccCChhhHHHHHHHHhhCCC---------CcCcccHHHHHHHHHh---cCChhHHHHHHHHHHH-----CCC-
Q 048533 205 VLIHACCKSSDVDKVEKLLCEMEFKDV---------RADLFTYNTLIALYCK---KGMHYEALAVQDRMER-----EGI- 266 (591)
Q Consensus 205 ~ll~~~~~~g~~~~a~~~~~~~~~~~~---------~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~-----~~~- 266 (591)
.-...............+...+..... +.+...+......+.. .|++++|...|+++.+ ...
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 226 (514)
T 2gw1_A 147 PAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKN 226 (514)
T ss_dssp ----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred hhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccC
Confidence 111111111122222222222211111 1124444555555554 8999999999999887 311
Q ss_pred -------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 048533 267 -------SPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVV 339 (591)
Q Consensus 267 -------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 339 (591)
+.+..++..+...+...|++++|...++++....|+...+..+..++...|++++|...++.+.... +.+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 305 (514)
T 2gw1_A 227 NEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSS 305 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTH
T ss_pred ccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHH
Confidence 1235577888889999999999999999988766667778888899999999999999999998764 33667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 340 TYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFC 419 (591)
Q Consensus 340 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 419 (591)
.+..+...+...|++++|...++.+.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 383 (514)
T 2gw1_A 306 VYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILT 383 (514)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHH
Confidence 888888999999999999999999988743 367788899999999999999999999998764 335778888999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048533 420 KAKEMDIAKELLFGMLDAGFS-PS----YCSYSWLVDGYCN---KNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKK 491 (591)
Q Consensus 420 ~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 491 (591)
..|++++|...++++.+.... ++ ...+..+...+.. .|++++|...++.+.+..+. +..++..+..++...
T Consensus 384 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~ 462 (514)
T 2gw1_A 384 DKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQ 462 (514)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHh
Confidence 999999999999998864211 11 3478888999999 99999999999999987543 788899999999999
Q ss_pred CCHHHHHHHHHHHHhC
Q 048533 492 EKVDYAQRLFNLMQGN 507 (591)
Q Consensus 492 g~~~~a~~~~~~~~~~ 507 (591)
|++++|...|+++.+.
T Consensus 463 g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 463 EDIDEAITLFEESADL 478 (514)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999999985
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=1.6e-23 Score=210.26 Aligned_cols=304 Identities=12% Similarity=0.049 Sum_probs=167.2
Q ss_pred CCChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHH
Q 048533 37 SLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVL 116 (591)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 116 (591)
.|........++..+...|++++|+..|+.+.+..|. +..++..++.++...|++++|+..|+++.+.+
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------- 90 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-------- 90 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------
Confidence 4444444555555566667777777777777666555 56666677777777777777777777766644
Q ss_pred HHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCH---HhHHHH------------HHHHHhcCCh
Q 048533 117 NALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHL---HACTVL------------LNSLAKDRLT 181 (591)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~~~~ 181 (591)
|.+..++..++.+|.+.|++++|++.|+++.+.++. +. .++..+ ...+...|++
T Consensus 91 ----------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 91 ----------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159 (450)
T ss_dssp ----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred ----------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 233455666666777777777777777777665432 22 344433 2335555666
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 048533 182 DMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRM 261 (591)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 261 (591)
+.|+..|+.+.+..+. +..++..+..++.+.|++++|...|+++...+ +.+..+|..++.++...|++++|...|+++
T Consensus 160 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 160 TAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666666554332 45555555666666666666666666655432 234455555666666666666666666655
Q ss_pred HHCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHhhcCCCC-----hhhHHHHHHHHHhcCCHHHHHH
Q 048533 262 EREGISPDIVTYNSL------------IHGFCREGRMREARRLFRDIKGATPN-----HVTYTTLIDGYCRANDLEEALR 324 (591)
Q Consensus 262 ~~~~~~p~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~ 324 (591)
.+... .+...+..+ ...+...|++++|...|+++....|+ ...+..+..++.+.|++++|..
T Consensus 238 ~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 238 LKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 54321 122223222 44455555555555555555443333 2234444555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 325 LREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNE 366 (591)
Q Consensus 325 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 366 (591)
.++.+.+.. +.+...+..+..+|...|++++|...++.+.+
T Consensus 317 ~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 317 VCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 555544431 22344455555555555555555555555544
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=2e-23 Score=214.64 Aligned_cols=435 Identities=10% Similarity=-0.015 Sum_probs=327.4
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
...+..++..+.+.|++++|+..|+++...+ |.++.++..++.+|.+.|++++|++.|+++.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 86 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD------------------PNEPVFYSNISACYISTGDLEKVIEFTTKAL 86 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567789999999999999999999999865 4456778889999999999999999999999
Q ss_pred hCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCC--CCcCc
Q 048533 158 VHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKD--VRADL 235 (591)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~ 235 (591)
+.++. +..++..+..++...|++++|...|+ .....+.+. ...+..+...+....|...++.+.... ..+..
T Consensus 87 ~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 160 (537)
T 3fp2_A 87 EIKPD-HSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFD----GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQV 160 (537)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CC
T ss_pred hcCCc-hHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCC----hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccc
Confidence 98765 78899999999999999999999996 443322222 223445555666788999999886641 11112
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH--------hcCCHHHHHHHHHHhhcCCCCh---
Q 048533 236 FTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIV-TYNSLIHGFC--------REGRMREARRLFRDIKGATPNH--- 303 (591)
Q Consensus 236 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~--------~~g~~~~A~~~~~~~~~~~~~~--- 303 (591)
......+..+....+.+.+...+...... .+... ....+...+. ..|++++|..+++++....|+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~ 238 (537)
T 3fp2_A 161 LPSNTSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238 (537)
T ss_dssp CCCHHHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHH
T ss_pred cchHhHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchh
Confidence 22334455556666666665554433322 22222 2222222222 2257899999999998766652
Q ss_pred -----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHH
Q 048533 304 -----VTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNT 378 (591)
Q Consensus 304 -----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 378 (591)
.++..+...+...|++++|...++.+.+. .|+...+..+...+...|++++|...++.+.+.. +.+..++..
T Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 315 (537)
T 3fp2_A 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYH 315 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHH
Confidence 34666777888899999999999999886 4567888888888999999999999999998864 336788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048533 379 LINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNN 458 (591)
Q Consensus 379 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 458 (591)
+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 316 l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 393 (537)
T 3fp2_A 316 RGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGD 393 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCC
Confidence 99999999999999999999988753 356788889999999999999999999998864 4456788889999999999
Q ss_pred HHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 048533 459 EEALLKLLDEFVSRGL-----CVDVSVYRALIRRFCKK----------EKVDYAQRLFNLMQGNGILGDSVIYTSLAYAY 523 (591)
Q Consensus 459 ~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 523 (591)
+++|...++++.+..+ ......+..+...+... |++++|...++++.+.. +.+...+..+..+|
T Consensus 394 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 472 (537)
T 3fp2_A 394 FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLK 472 (537)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 9999999999886421 11223345556677777 99999999999998853 34668899999999
Q ss_pred HHcCChhHHHHHHHHHHHCCC
Q 048533 524 WRAGEPKACSDILDDMYRRRL 544 (591)
Q Consensus 524 ~~~g~~~~A~~~~~~~~~~~~ 544 (591)
.+.|++++|...|+++.+...
T Consensus 473 ~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 473 LQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-
T ss_pred HHhccHHHHHHHHHHHHHhCC
Confidence 999999999999999999653
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=3.2e-23 Score=208.05 Aligned_cols=317 Identities=12% Similarity=0.021 Sum_probs=229.2
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHH
Q 048533 58 SLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLV 137 (591)
Q Consensus 58 ~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 137 (591)
..+...|..+....|. +..++..++..+.+.|++++|+.+|+++.... |.+..++..++
T Consensus 9 ~~~~~~~~~~~~~~p~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~------------------p~~~~~~~~l~ 67 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMA---DVEKHLELGKKLLAAGQLADALSQFHAAVDGD------------------PDNYIAYYRRA 67 (450)
T ss_dssp --------------CH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHH
T ss_pred ccccccccccccccHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------CccHHHHHHHH
Confidence 3445555555554555 78888999999999999999999999998754 34567788899
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHH--------
Q 048533 138 IFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANI---HLYNVL-------- 206 (591)
Q Consensus 138 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l-------- 206 (591)
.+|...|++++|+..|+++.+.++. +..++..+..++.+.|++++|.+.|+.+.+.++. +. ..+..+
T Consensus 68 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 145 (450)
T 2y4t_A 68 TVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQR 145 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999998765 7889999999999999999999999999987543 33 455555
Q ss_pred ----HHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048533 207 ----IHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCR 282 (591)
Q Consensus 207 ----l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 282 (591)
...+...|++++|...|+++.... +.+..++..++.++...|++++|...|+++.+.. +.+..++..++..|..
T Consensus 146 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 223 (450)
T 2y4t_A 146 LRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQ 223 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344778888888888888887654 4467778888888888888888888888887653 2367788888888888
Q ss_pred cCCHHHHHHHHHHhhcCCCCh-hhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHH
Q 048533 283 EGRMREARRLFRDIKGATPNH-VTYTTL------------IDGYCRANDLEEALRLREVMAAKGVYPG-----VVTYNSI 344 (591)
Q Consensus 283 ~g~~~~A~~~~~~~~~~~~~~-~~~~~l------------i~~~~~~g~~~~a~~~~~~~~~~~~~p~-----~~~~~~l 344 (591)
.|++++|...|+++.+..|+. ..+..+ ...+...|++++|...|+.+.+.. |+ ...+..+
T Consensus 224 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l 301 (450)
T 2y4t_A 224 LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERI 301 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHH
Confidence 888888888888887655543 333333 566666777777777777766542 33 2355666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048533 345 LRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEA 402 (591)
Q Consensus 345 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 402 (591)
...+.+.|++++|...++.+.+.. +.+...|..+..+|...|++++|...++++.+.
T Consensus 302 ~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 302 CHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 666666777777777777666542 235566666666677777777777777666664
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=4.3e-23 Score=212.17 Aligned_cols=428 Identities=11% Similarity=-0.028 Sum_probs=325.5
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKI 122 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (591)
....++..+...|++++|+..|+.+++..|+ +..++..++.++.+.|++++|++.|+++...+
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------- 89 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPN---EPVFYSNISACYISTGDLEKVIEFTTKALEIK-------------- 89 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------
Confidence 3455667777789999999999999998887 88999999999999999999999999998865
Q ss_pred cCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC------C
Q 048533 123 HDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLG------V 196 (591)
Q Consensus 123 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~ 196 (591)
|.+..++..++.+|...|++++|+..|+ .....+.+. ...+..+...+....|...++.+.... .
T Consensus 90 ----p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 160 (537)
T 3fp2_A 90 ----PDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFD----GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQV 160 (537)
T ss_dssp ----TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CC
T ss_pred ----CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCC----hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccc
Confidence 4456778889999999999999999996 444333222 222344555566678999999986642 2
Q ss_pred CCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcc-cHHHHHHHHH--------hcCChhHHHHHHHHHHHCCCC
Q 048533 197 VANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLF-TYNTLIALYC--------KKGMHYEALAVQDRMEREGIS 267 (591)
Q Consensus 197 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~--------~~g~~~~a~~~~~~~~~~~~~ 267 (591)
.|+.. .+..+....+.+.+...+...... .+... ....+...+. ..|++++|..+++++.+....
T Consensus 161 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~ 234 (537)
T 3fp2_A 161 LPSNT----SLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV 234 (537)
T ss_dssp CCCHH----HHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC
T ss_pred cchHh----HHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC
Confidence 23332 334455566666555444333221 11111 2222222221 235789999999999876322
Q ss_pred CC-------HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 048533 268 PD-------IVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVT 340 (591)
Q Consensus 268 p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 340 (591)
+ ..++..+...+...|++++|...++.+....|+...+..+...+...|++++|...++.+.+.. +.+..+
T Consensus 235 -~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 312 (537)
T 3fp2_A 235 -DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPT 312 (537)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHH
T ss_pred -cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHH
Confidence 2 2356777788889999999999999998877888888999999999999999999999998764 346788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048533 341 YNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCK 420 (591)
Q Consensus 341 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 420 (591)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 313 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 390 (537)
T 3fp2_A 313 YYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTD 390 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 9999999999999999999999998864 3367889999999999999999999999998875 3467788999999999
Q ss_pred cCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 421 AKEMDIAKELLFGMLDAG-----FSPSYCSYSWLVDGYCNK----------NNEEALLKLLDEFVSRGLCVDVSVYRALI 485 (591)
Q Consensus 421 ~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 485 (591)
.|++++|...++++++.. .......+......+... |++++|...++++.+..+. +..++..+.
T Consensus 391 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~ 469 (537)
T 3fp2_A 391 RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLA 469 (537)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 999999999999988532 111223344556677777 9999999999999987543 788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 048533 486 RRFCKKEKVDYAQRLFNLMQGN 507 (591)
Q Consensus 486 ~~~~~~g~~~~a~~~~~~~~~~ 507 (591)
.+|...|++++|...|+++.+.
T Consensus 470 ~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 470 QLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999985
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=5.3e-20 Score=178.40 Aligned_cols=323 Identities=12% Similarity=0.003 Sum_probs=174.0
Q ss_pred HHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCC
Q 048533 46 VLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDD 125 (591)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (591)
.++..+...|++++|+..|+.+.+..|. +..++..++.++...|++++|+..++++...+
T Consensus 8 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------- 67 (359)
T 3ieg_A 8 ELGKKLLAAGQLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIALK----------------- 67 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------------
Confidence 3445555567888888888888777665 67777778888888888888888887777654
Q ss_pred CCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCC---ccCHHhHHHH------------HHHHHhcCChhHHHHHHHH
Q 048533 126 PDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNL---MPHLHACTVL------------LNSLAKDRLTDMVWKVYKK 190 (591)
Q Consensus 126 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~ 190 (591)
|.+..++..++..|...|++++|+..|+++.+.++ . +...+..+ ...+...|+++.|.+.+++
T Consensus 68 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 145 (359)
T 3ieg_A 68 -MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQE-EKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK 145 (359)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccC-hHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 33445667777778888888888888888777654 2 33344333 3444555555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 048533 191 MVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDI 270 (591)
Q Consensus 191 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 270 (591)
+.+..+. +...+..+...+...|++++|...+++..... +.+..++..+...+...|++++|...+++..+.... +.
T Consensus 146 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~ 222 (359)
T 3ieg_A 146 ILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HK 222 (359)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-ch
Confidence 5544332 44445555555555555555555555554442 234444555555555555555555555554443211 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHH
Q 048533 271 VTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGV----VTYNSILR 346 (591)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~ll~ 346 (591)
.++..+... . .......+...+.+.|++++|...++.+.+.... +. ..+..+..
T Consensus 223 ~~~~~~~~~-----------------~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 223 RCFAHYKQV-----------------K----KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICH 280 (359)
T ss_dssp HHHHHHHHH-----------------H----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----------------H----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHH
Confidence 111111000 0 0000011234455555666666655555543211 12 12333445
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 347 KLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHG 417 (591)
Q Consensus 347 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 417 (591)
++...|++++|...++...+.. +.+...+..+...+...|++++|...|+++.+..+ .+...+..+..+
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~ 349 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE-NDQQIREGLEKA 349 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHHH
Confidence 5555666666666666555542 22455555666666666666666666666655431 134444444443
No 14
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=1.8e-17 Score=167.68 Aligned_cols=382 Identities=13% Similarity=0.040 Sum_probs=296.4
Q ss_pred HHHHHHHHHhhCCCccCHHhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhhH
Q 048533 148 DGLQVFDQMRVHNLMPHLHACTVLLNSLAK----DRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCK----SSDVDKV 219 (591)
Q Consensus 148 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a 219 (591)
.++..+.+..+.| +..++..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 3455566555543 66777777777777 788888888888888764 56677777777877 7888888
Q ss_pred HHHHHHHhhCCCCcCcccHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 048533 220 EKLLCEMEFKDVRADLFTYNTLIALYCK----KGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCR----EGRMREARR 291 (591)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~ 291 (591)
.+.|++....| +...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|.+
T Consensus 99 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 99 VIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 88888887765 56677778888877 778888988888888764 56677778887876 778899999
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 048533 292 LFRDIKGATPNHVTYTTLIDGYCR----ANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCK----EGRIRDANRLLNE 363 (591)
Q Consensus 292 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~ 363 (591)
+|++.... .+..++..+...|.. .++.++|.++|++..+.| +...+..+...|.. .+++++|...|+.
T Consensus 173 ~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 173 WYSKAAEQ-GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHC-CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 88887653 467777778888877 788999999998888765 56677777777775 7888999999998
Q ss_pred HHhCCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHH
Q 048533 364 MNEKKIAPDNVTCNTLINAYCK----IGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKA-----KEMDIAKELLFGM 434 (591)
Q Consensus 364 ~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~ 434 (591)
..+.| +...+..+...|.. .++.++|...|++..+.+ +...+..+...|... +++++|...+++.
T Consensus 249 a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 249 SAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp HHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 88764 56677777777877 788999999999887764 566777788888777 8999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhC
Q 048533 435 LDAGFSPSYCSYSWLVDGYCNKN---NEEALLKLLDEFVSRGLCVDVSVYRALIRRFCK----KEKVDYAQRLFNLMQGN 507 (591)
Q Consensus 435 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 507 (591)
.+.+ +...+..+...|...| +.++|.+++++..+.+ ++..+..+...|.. .+++++|..+|++..+.
T Consensus 323 ~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 323 AEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 8865 4566777777777756 7889999999998874 67888888888888 78999999999999886
Q ss_pred CCCcCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCC-C-CHHHHHHHHHhhhc
Q 048533 508 GILGDSVIYTSLAYAYWR----AGEPKACSDILDDMYRRRLM-I-TLKIYRSFSASYAK 560 (591)
Q Consensus 508 ~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~li~~~~~ 560 (591)
| +...+..+...|.. .+++++|...|++..+.+.. | ++.....+...+.+
T Consensus 397 ~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 397 G---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 5 57778888888888 88999999999999988743 2 33344444444443
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=1.8e-19 Score=174.69 Aligned_cols=333 Identities=12% Similarity=0.033 Sum_probs=234.0
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+...+..++..+...|++++|+..|+++...+ |.+..++..++..|...|++++|+..|+++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~------------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 63 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD------------------PDNYIAYYRRATVFLAMGKSKAALPDLTKV 63 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------------------cccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 35667788888888888888888888887754 334566777888888888888888888888
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcC
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV--ANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRAD 234 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 234 (591)
.+.++. +..++..+...+...|+++.|...|+.+.+..+. .+...+..+.....
T Consensus 64 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------------- 119 (359)
T 3ieg_A 64 IALKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE----------------------- 119 (359)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------
T ss_pred HHhCCC-cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------
Confidence 877654 6677888888888888888888888888876431 12333333321100
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC-ChhhHHHHHHHH
Q 048533 235 LFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATP-NHVTYTTLIDGY 313 (591)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~ 313 (591)
...+..+...+...|++++|.+.++++.+... .+..++..+...+...|++++|...++++....| +..++..+...+
T Consensus 120 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 198 (359)
T 3ieg_A 120 MQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLY 198 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 01122334556666777777777766665432 3456666666777777777777777777665444 355666666777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHH------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----HHHH
Q 048533 314 CRANDLEEALRLREVMAAKGVYPGVVTY------------NSILRKLCKEGRIRDANRLLNEMNEKKIAPDN----VTCN 377 (591)
Q Consensus 314 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~ 377 (591)
...|++++|...++...+.. +.+...+ ..+...+.+.|++++|...++.+.+.... +. ..+.
T Consensus 199 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 276 (359)
T 3ieg_A 199 YQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKE 276 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHH
Confidence 77777777777777666542 1122222 23366688999999999999999886432 33 2355
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048533 378 TLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNK 456 (591)
Q Consensus 378 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (591)
.+..++...|++++|...++++.+.. +.+..++..+...+...|++++|...++++++.. +.+...+..+..+....
T Consensus 277 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 277 RICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHH
Confidence 67889999999999999999998874 3478899999999999999999999999999865 33466666666665543
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=8.2e-18 Score=170.16 Aligned_cols=367 Identities=14% Similarity=0.024 Sum_probs=309.9
Q ss_pred CccchHHHHHHHHHh----cCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCC
Q 048533 128 GNSHVLSWLVIFYAN----LKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAK----DRLTDMVWKVYKKMVQLGVVAN 199 (591)
Q Consensus 128 ~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 199 (591)
.++.....+...|.. .+++++|+..|++..+.+ +..++..|...|.. .+++++|.+.|++..+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 345667778888888 899999999999999874 66788999999998 899999999999999875 5
Q ss_pred HHHHHHHHHHHHc----cCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHH
Q 048533 200 IHLYNVLIHACCK----SSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCK----KGMHYEALAVQDRMEREGISPDIV 271 (591)
Q Consensus 200 ~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~ 271 (591)
...+..+...|.. .+++++|...|++....| +...+..+...|.. .+++++|++.|++..+.| +..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 6677778888888 789999999999998876 66788888888887 789999999999998874 678
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 272 TYNSLIHGFCR----EGRMREARRLFRDIKGATPNHVTYTTLIDGYCR----ANDLEEALRLREVMAAKGVYPGVVTYNS 343 (591)
Q Consensus 272 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 343 (591)
.+..+...|.. .+++++|.++|++.... .+..++..+...|.. .+++++|..+|++..+.| +...+..
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 260 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATS-GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFR 260 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 88889999988 89999999999998753 456777888888876 889999999999998875 5667777
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048533 344 ILRKLCK----EGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKI-----GDTASAMKVKNRMLEAGLMLDQFTYKAL 414 (591)
Q Consensus 344 ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l 414 (591)
+...+.. .++.++|...|+...+.| +...+..+...|... ++.++|...|++..+.+ +...+..+
T Consensus 261 lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l 334 (490)
T 2xm6_A 261 LGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANL 334 (490)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHH
Confidence 7777877 899999999999998875 667888888888887 89999999999999875 56778888
Q ss_pred HHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 415 IHGFCKAK---EMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCN----KNNEEALLKLLDEFVSRGLCVDVSVYRALIRR 487 (591)
Q Consensus 415 ~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 487 (591)
...|...| ++++|.+.+++..+.+ +...+..+...|.. .+++++|...++++.+.+ ++..+..+...
T Consensus 335 g~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~ 408 (490)
T 2xm6_A 335 GAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEI 408 (490)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 88888766 7899999999999864 67788889999988 899999999999999875 67888999999
Q ss_pred HHh----cCCHHHHHHHHHHHHhCCCC-c-CHHHHHHHHHH
Q 048533 488 FCK----KEKVDYAQRLFNLMQGNGIL-G-DSVIYTSLAYA 522 (591)
Q Consensus 488 ~~~----~g~~~~a~~~~~~~~~~~~~-p-~~~~~~~l~~~ 522 (591)
|.. .+++++|...|++..+.+.. | +......+...
T Consensus 409 y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 409 YYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 988 89999999999999987533 2 33444444433
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=4.9e-18 Score=173.59 Aligned_cols=427 Identities=10% Similarity=0.050 Sum_probs=300.9
Q ss_pred HHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhc
Q 048533 64 FKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANL 143 (591)
Q Consensus 64 f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (591)
|+.+++.+|. +..+|..++. +.+.|++++|..+|+++.... |.+..++...+..+.+.
T Consensus 2 le~al~~~P~---~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~------------------P~~~~~w~~~~~~~~~~ 59 (530)
T 2ooe_A 2 AEKKLEENPY---DLDAWSILIR-EAQNQPIDKARKTYERLVAQF------------------PSSGRFWKLYIEAEIKA 59 (530)
T ss_dssp HHHHHHHCTT---CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC------------------TTCHHHHHHHHHHHHHT
T ss_pred hhhHhhhCCC---CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC------------------CCCHHHHHHHHHHHHhc
Confidence 5666777777 8889888888 478899999999999998754 55667788889999999
Q ss_pred CChHHHHHHHHHHhhCCCccCHHhHHHHHHHH-HhcCChhHHHH----HHHHHHHC-CCCC-CHHHHHHHHHHHHc----
Q 048533 144 KMTQDGLQVFDQMRVHNLMPHLHACTVLLNSL-AKDRLTDMVWK----VYKKMVQL-GVVA-NIHLYNVLIHACCK---- 212 (591)
Q Consensus 144 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~ll~~~~~---- 212 (591)
|++++|..+|+++++.. |+...|...+... ...|+.+.|.+ +|+...+. |..| +...|...+....+
T Consensus 60 ~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~ 137 (530)
T 2ooe_A 60 KNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAV 137 (530)
T ss_dssp TCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCC
T ss_pred CCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCc
Confidence 99999999999999875 5777888777544 35677777665 77776543 4433 45677777776654
Q ss_pred -----cCChhhHHHHHHHHhhCCCCcC--cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048533 213 -----SSDVDKVEKLLCEMEFKDVRAD--LFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGR 285 (591)
Q Consensus 213 -----~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 285 (591)
.|+++.|..+|++.... +.+ ...|..........|. .+...++. ...++
T Consensus 138 ~~~~~~~~~~~a~~~y~~al~~--P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~ 193 (530)
T 2ooe_A 138 GSYAENQRITAVRRVYQRGCVN--PMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRD 193 (530)
T ss_dssp SSTTHHHHHHHHHHHHHHHTTS--CCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHH
T ss_pred ccHHHHhHHHHHHHHHHHHHhc--hhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHH
Confidence 67888999999998873 211 1222222211101110 00111110 12344
Q ss_pred HHHHHHHHHHhh------c-----CCCC--------hhhHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCCH
Q 048533 286 MREARRLFRDIK------G-----ATPN--------HVTYTTLIDGYCRA----NDL----EEALRLREVMAAKGVYPGV 338 (591)
Q Consensus 286 ~~~A~~~~~~~~------~-----~~~~--------~~~~~~li~~~~~~----g~~----~~a~~~~~~~~~~~~~p~~ 338 (591)
+..|..++.... . ..|+ ...|...+...... ++. +++..+|+++.... +.+.
T Consensus 194 ~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~ 272 (530)
T 2ooe_A 194 YMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHP 272 (530)
T ss_dssp HHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCH
Confidence 555665555421 1 1333 13454444333221 232 46777888887752 3467
Q ss_pred HHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 048533 339 VTYNSILRKLCK-------EGRIR-------DANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGL 404 (591)
Q Consensus 339 ~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 404 (591)
..|......+.+ .|+++ +|..++++.++.-.+.+...|..++..+.+.|++++|..+|+++.+...
T Consensus 273 ~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p 352 (530)
T 2ooe_A 273 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED 352 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc
Confidence 778777777765 68876 8999999998732344678899999999999999999999999998632
Q ss_pred CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048533 405 MLDQ-FTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDG-YCNKNNEEALLKLLDEFVSRGLCVDVSVYR 482 (591)
Q Consensus 405 ~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 482 (591)
.+. ..|..++..+.+.|++++|..+|++.++.. +.+...+...... +...|+.++|..+|+.+++..+ -++..|.
T Consensus 353 -~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~ 429 (530)
T 2ooe_A 353 -IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVL 429 (530)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHH
T ss_pred -cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHH
Confidence 233 578888888889999999999999998753 2233333332222 3468999999999999998643 3788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CcC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 483 ALIRRFCKKEKVDYAQRLFNLMQGNGI-LGD--SVIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 483 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
.++..+...|+.++|+.+|++....+. .|+ ...|...+......|+.+.+..+++++.+.
T Consensus 430 ~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 430 AYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998632 332 358888898889999999999999999885
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=5.4e-19 Score=169.15 Aligned_cols=283 Identities=11% Similarity=-0.026 Sum_probs=171.4
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+..++..++..+...|++++|+.+|+++...+ |.+..++..++..+...|++++|+.+++++
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~------------------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 82 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD------------------PFHASCLPVHIGTLVELNKANELFYLSHKL 82 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------CCChhhHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 55566677777777777777777777776654 333445555666677777777777777777
Q ss_pred hhCCCccCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCc
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDR-LTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADL 235 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 235 (591)
.+.++. +..++..+...+...| +++.|.+.|+++.+..+. +...+..+...+...|++++|...+++..... +.+.
T Consensus 83 ~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 159 (330)
T 3hym_B 83 VDLYPS-NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCH 159 (330)
T ss_dssp HHHCTT-STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCS
T ss_pred HHhCcC-CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccH
Confidence 766544 5566667777777777 677777777777665543 45566666667777777777777777666553 2344
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcC----------CCChhh
Q 048533 236 FTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGA----------TPNHVT 305 (591)
Q Consensus 236 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~ 305 (591)
..+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...+++.... .....+
T Consensus 160 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (330)
T 3hym_B 160 LPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPL 238 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHH
Confidence 556666666666677777776666666543 224556666666666666666666666665431 122345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 048533 306 YTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAY 383 (591)
Q Consensus 306 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 383 (591)
+..+..++...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 239 ~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 239 LNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 5555555666666666666665555442 1234445555555555555555555555555432 12334444444444
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=2e-17 Score=169.08 Aligned_cols=411 Identities=9% Similarity=-0.014 Sum_probs=280.5
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 048533 127 DGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVL 206 (591)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 206 (591)
|.+..++..++. +.+.|++++|..+|+++++..+. +...|..++..+.+.|+++.|.++|+++++.. |+...|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 455666777777 47788889999999998887655 77788888888888888999999998888764 466677666
Q ss_pred HHHH-HccCChhhHHH----HHHHHhh-CCCCc-CcccHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCCCCH
Q 048533 207 IHAC-CKSSDVDKVEK----LLCEMEF-KDVRA-DLFTYNTLIALYCK---------KGMHYEALAVQDRMEREGISPDI 270 (591)
Q Consensus 207 l~~~-~~~g~~~~a~~----~~~~~~~-~~~~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~~~~~~p~~ 270 (591)
+... ...|+.+.|.+ +|+.... .|..| +...|...+..... .|+++.|..+|++..+....+..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 6433 34577777665 6665543 23332 34566666665544 57777888888877763111111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------HHCC---CCCC----
Q 048533 271 VTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVM------AAKG---VYPG---- 337 (591)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~------~~~~---~~p~---- 337 (591)
..|..........|. ..+..++. ...++++.|..++... .+.. ++|+
T Consensus 166 ~~~~~~~~~e~~~~~-~~~~~~l~-------------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 225 (530)
T 2ooe_A 166 QLWRDYNKYEEGINI-HLAKKMIE-------------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQ 225 (530)
T ss_dssp HHHHHHHHHHHHHCH-HHHHHHHH-------------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CC
T ss_pred HHHHHHHHHHHhhch-hHHHHHHH-------------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChh
Confidence 222222211111111 11111111 1234566777666652 2221 2443
Q ss_pred ----HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHhCCCCCChHHHHHHHHHHHH-------cCCHH-------H
Q 048533 338 ----VVTYNSILRKLCKE----GRI----RDANRLLNEMNEKKIAPDNVTCNTLINAYCK-------IGDTA-------S 391 (591)
Q Consensus 338 ----~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~~-------~ 391 (591)
...|...+...... ++. ..+..+|++.+.. .+.+...|..++..+.+ .|+++ +
T Consensus 226 ~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 304 (530)
T 2ooe_A 226 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 304 (530)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHH
Confidence 24555555433322 232 4788899998876 34478889888888876 69987 9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048533 392 AMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPS-Y-CSYSWLVDGYCNKNNEEALLKLLDEF 469 (591)
Q Consensus 392 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~ 469 (591)
|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++++.. |+ . ..|..++..+.+.|+.++|.++|+++
T Consensus 305 A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 305 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc--ccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999863224468889999999999999999999999999853 43 3 57888888889999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC
Q 048533 470 VSRGLCVDVSVYRALIRR-FCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRL-MIT 547 (591)
Q Consensus 470 ~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~ 547 (591)
.+.... +...|...+.. +...|++++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|+++...+. .|+
T Consensus 383 l~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 383 REDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred HhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 986332 33444333322 346899999999999998852 33678999999999999999999999999999743 232
Q ss_pred --HHHHHHHHHhhhcchhHHH
Q 048533 548 --LKIYRSFSASYAKDNEILD 566 (591)
Q Consensus 548 --~~~~~~li~~~~~~~~~~~ 566 (591)
...|..++....+.|+...
T Consensus 461 ~~~~lw~~~~~~e~~~G~~~~ 481 (530)
T 2ooe_A 461 KSGEIWARFLAFESNIGDLAS 481 (530)
T ss_dssp GCHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHH
Confidence 4478777887777776554
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=4.6e-19 Score=169.64 Aligned_cols=285 Identities=11% Similarity=-0.051 Sum_probs=241.2
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcC
Q 048533 45 KVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHD 124 (591)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (591)
..++..+...|++++|+..|+.+.+..|. +..++..++.++...|++++|..+++++.+.+
T Consensus 26 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------------- 86 (330)
T 3hym_B 26 VSLAERHYYNCDFKMCYKLTSVVMEKDPF---HASCLPVHIGTLVELNKANELFYLSHKLVDLY---------------- 86 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC---ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC----------------
Confidence 33444555569999999999999998887 67777788899999999999999999998865
Q ss_pred CCCCccchHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 048533 125 DPDGNSHVLSWLVIFYANLK-MTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLY 203 (591)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 203 (591)
+.+..++..++..|...| ++++|++.|+++.+.++. +..++..+...+...|++++|...++++.+..+. +...+
T Consensus 87 --~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~ 162 (330)
T 3hym_B 87 --PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPM 162 (330)
T ss_dssp --TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHH
T ss_pred --cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHH
Confidence 445677888999999999 999999999999988765 6788999999999999999999999999987655 56677
Q ss_pred HHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC--------CCCCHHHHHH
Q 048533 204 NVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREG--------ISPDIVTYNS 275 (591)
Q Consensus 204 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~p~~~~~~~ 275 (591)
..+...+...|++++|...+++..... +.+..++..+...+...|++++|...+++..+.. .+....++..
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
T 3hym_B 163 LYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNN 241 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHH
Confidence 779999999999999999999998874 4567889999999999999999999999987641 1334678899
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC
Q 048533 276 LIHGFCREGRMREARRLFRDIKGATP-NHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKL-CKEGR 353 (591)
Q Consensus 276 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~-~~~~~ 353 (591)
+...+...|++++|...+++.....| +...+..+..++...|++++|.+.+++..+.. +.+...+..+..++ ...|+
T Consensus 242 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCc
Confidence 99999999999999999999987444 57788999999999999999999999998764 33667777777776 34555
Q ss_pred H
Q 048533 354 I 354 (591)
Q Consensus 354 ~ 354 (591)
.
T Consensus 321 ~ 321 (330)
T 3hym_B 321 S 321 (330)
T ss_dssp -
T ss_pred h
Confidence 4
No 21
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=2.5e-15 Score=158.95 Aligned_cols=479 Identities=13% Similarity=0.136 Sum_probs=338.4
Q ss_pred CCCCCChHHHHHHHHhhhcCC-CChhH---------HHHHHHHHhhhCCCCCCCHHHH------HHHHHHHHcCCCchHH
Q 048533 34 IASSLTSTAIHKVLLNLYNCC-HIPSL---------SCAFFKWAESAVPNYKHSLQSH------WTMIHILTKNKHFKSA 97 (591)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~~-~~~~~---------A~~~f~~~~~~~p~~~~~~~~~------~~l~~~~~~~g~~~~A 97 (591)
+...-+...++..|+.+|-.. ++|+. ...+=+.+.+++|.. ...+| -.|+.+..++|.|+..
T Consensus 866 ~~~g~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~l--a~iay~~g~~d~eli~vt~~n~l~k~~ 943 (1630)
T 1xi4_A 866 IHEGCEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHL--ACVAYERGQCDLELINVCNENSLFKSL 943 (1630)
T ss_pred HhCCCCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcch--HHHHhcccCCcHHHHHHHhcchhHHHH
Confidence 334455677888889888754 45554 223444455555541 01111 1356666666666654
Q ss_pred HHHHHHHHHcCCCCc-------hHHHHHHH----hhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCC--ccC
Q 048533 98 QNMLEKIALRDFLST-------PSVLNALV----KIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNL--MPH 164 (591)
Q Consensus 98 ~~~~~~~~~~~~~~~-------~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~ 164 (591)
-+.+-+ +.++..| +..-..++ .+.-....+++-....+.+|...|.+.+|+++|+++.-.+. .-+
T Consensus 944 arylv~--r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n 1021 (1630)
T 1xi4_A 944 SRYLVR--RKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEH 1021 (1630)
T ss_pred HHHHHH--hcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccc
Confidence 333311 1122112 11222232 22222344566678889999999999999999999985422 124
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHH
Q 048533 165 LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIAL 244 (591)
Q Consensus 165 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 244 (591)
....+.++.+..+. +..+..+..++.... + ...+...+...|.+++|..+|++... .....+.++.
T Consensus 1022 ~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie- 1087 (1630)
T 1xi4_A 1022 RNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE- 1087 (1630)
T ss_pred HHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH-
Confidence 56677777777776 556666666665432 2 34477888899999999999999631 1222233322
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHH
Q 048533 245 YCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALR 324 (591)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 324 (591)
..|++++|.++.++.. +..+|..+..++...|++++|+..|.+. .|...|..++.++.+.|++++|.+
T Consensus 1088 --~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA----dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1088 --HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred --HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc----CChHHHHHHHHHHHHcCCHHHHHH
Confidence 7789999999998652 5788999999999999999999999775 467788889999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 048533 325 LREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGL 404 (591)
Q Consensus 325 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 404 (591)
.+....+.. +++...+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|..+
T Consensus 1156 yL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A 1156 YLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 1221 (1630)
T ss_pred HHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----
Confidence 999888764 33333445888999999988644442 2 346677888999999999999999999885
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048533 405 MLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRAL 484 (591)
Q Consensus 405 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 484 (591)
..|..+..++.+.|++++|.+.+++. .+..+|..+..+|...|++..|......+ ..++..+..+
T Consensus 1222 ----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeel 1286 (1630)
T 1xi4_A 1222 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 1286 (1630)
T ss_pred ----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHH
Confidence 47899999999999999999999877 35678989999999999999998876643 2367788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHc--CChhHHHHHHHHHHHCCCCC------CHHHHHHHHH
Q 048533 485 IRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRA--GEPKACSDILDDMYRRRLMI------TLKIYRSFSA 556 (591)
Q Consensus 485 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~~~~~li~ 556 (591)
+..|.+.|.+++|+.+++.....+ +-....|+-+..+|.+- ++.-++.++|..-.. +++ ....|..+.-
T Consensus 1287 i~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~ 1363 (1630)
T 1xi4_A 1287 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVF 1363 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHH
Confidence 999999999999999999888653 33446777777777664 344555555553332 222 3457889999
Q ss_pred hhhcchhHHHHHHHHHHh
Q 048533 557 SYAKDNEILDLFWSHVVD 574 (591)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~ 574 (591)
.|.+.|+++.|.--+|..
T Consensus 1364 LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1364 LYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred HHHhcccHHHHHHHHHhc
Confidence 999999988877555533
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=4.2e-19 Score=172.86 Aligned_cols=304 Identities=12% Similarity=-0.010 Sum_probs=186.1
Q ss_pred CCChhHHHH-HHHHHhhhCCCCCC-CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccc
Q 048533 54 CHIPSLSCA-FFKWAESAVPNYKH-SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSH 131 (591)
Q Consensus 54 ~~~~~~A~~-~f~~~~~~~p~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (591)
.|++++|+. .|+.+....|..+. +...+..++..+.+.|++++|+..|+++.+.+ |.+..
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~ 99 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD------------------PKHME 99 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC------------------TTCHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------CCCHH
Confidence 367788887 88877766655332 24556777888888888888888888877654 33455
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACC 211 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 211 (591)
++..++.+|...|++++|+..|+++.+.++. +..++..+...+...|+++.|...++.+.+..+. +...+..+...
T Consensus 100 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-- 175 (368)
T 1fch_A 100 AWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-- 175 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-------
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH--
Confidence 6777777888888888888888888777654 6777777778888888888888888887776543 22222111000
Q ss_pred ccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 048533 212 KSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISP-DIVTYNSLIHGFCREGRMREAR 290 (591)
Q Consensus 212 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 290 (591)
. ... . ....+..+...+ ..|++++|...++++.+..... +..++..+...+...|++++|.
T Consensus 176 -----~-------~~~----~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 237 (368)
T 1fch_A 176 -----A-------GGA----G-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV 237 (368)
T ss_dssp ---------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----h-------hhh----c-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 0 000 0 000111122222 6667777777777666543221 3566666777777777777777
Q ss_pred HHHHHhhcCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048533 291 RLFRDIKGATP-NHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKI 369 (591)
Q Consensus 291 ~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 369 (591)
..++++....| +..++..+..++...|++++|...|+++.+.. +.+...+..+..++.+.|++++|...++.+.+...
T Consensus 238 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 238 DCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 77777665334 35566667777777777777777777766543 23456667777777777777777777776655321
Q ss_pred C----------CChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048533 370 A----------PDNVTCNTLINAYCKIGDTASAMKVKNR 398 (591)
Q Consensus 370 ~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~ 398 (591)
. ....+|..+..++...|+.++|..++.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 317 KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp TC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 1 1156777777777777777777776654
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=2.1e-18 Score=167.84 Aligned_cols=309 Identities=10% Similarity=-0.047 Sum_probs=226.9
Q ss_pred HHcCCCchHHHH-HHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHH
Q 048533 88 LTKNKHFKSAQN-MLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLH 166 (591)
Q Consensus 88 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 166 (591)
+...|++++|+. .+++.....+. .+..+...+..++..|.+.|++++|+..|+++.+.++. +..
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~--------------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~ 99 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEE--------------NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HME 99 (368)
T ss_dssp -----------CHHHHCCCCCCSS--------------CTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCC--------------CcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH
Confidence 334578888887 77766543221 12234566778888899999999999999999888655 777
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHH
Q 048533 167 ACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYC 246 (591)
Q Consensus 167 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 246 (591)
++..+..++...|+++.|...|+++.+.++. +..++..+...+...|++++|...++++.... +.+...+..+...
T Consensus 100 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-- 175 (368)
T 1fch_A 100 AWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-- 175 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC-------
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH--
Confidence 8888888899999999999999988887654 67788888888888888888888888888764 2222222211110
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC---hhhHHHHHHHHHhcCCHHHHH
Q 048533 247 KKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPN---HVTYTTLIDGYCRANDLEEAL 323 (591)
Q Consensus 247 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~ 323 (591)
.. . ..+ ...+..+...+ ..|++++|...++++....|+ ..++..+...+...|++++|.
T Consensus 176 -----~~-------~----~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 237 (368)
T 1fch_A 176 -----AG-------G----AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV 237 (368)
T ss_dssp ---------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----hh-------h----hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 00 0 001 11122233333 889999999999999875555 678899999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 048533 324 RLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAG 403 (591)
Q Consensus 324 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 403 (591)
..++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++.+.|++++|...++++.+..
T Consensus 238 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 238 DCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999998763 3467889999999999999999999999998863 3467899999999999999999999999987653
Q ss_pred CCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048533 404 LML----------DQFTYKALIHGFCKAKEMDIAKELLFGML 435 (591)
Q Consensus 404 ~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 435 (591)
... ...+|..+..++...|++++|..++.+.+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 316 RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 221 26889999999999999999999887544
No 24
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=3.9e-15 Score=157.53 Aligned_cols=411 Identities=15% Similarity=0.172 Sum_probs=283.7
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+++-.-..+++|...|.+.+|+++++++...+. .+.++.+.-+.++.+..+. +..+..++.++.
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s---------------~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kL 1047 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNS---------------VFSEHRNLQNLLILTAIKA-DRTRVMEYINRL 1047 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCC---------------cccccHHHHHHHHHHHHHh-ChhhHHHHHHHh
Confidence 344445678888999999999999999984321 1122333444455555544 445555555555
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcc
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLF 236 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 236 (591)
... + ...+...+...|.+++|..+|++... .....+.++. ..|++++|.++.++.. +..
T Consensus 1048 d~~----d---~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~ 1106 (1630)
T 1xi4_A 1048 DNY----D---APDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPA 1106 (1630)
T ss_pred hhc----c---HHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHH
Confidence 422 1 33477778888888888888888621 2222233332 6778888888888663 467
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 048533 237 TYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRA 316 (591)
Q Consensus 237 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~ 316 (591)
+|..+..++...|++++|++.|.+. -|...|..++.++.+.|++++|.+++....+..++....+.++.+|.+.
T Consensus 1107 vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl 1180 (1630)
T 1xi4_A 1107 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT 1180 (1630)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhh
Confidence 8888888888889999988888653 3677788888888888999999988888776555555556688888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 048533 317 NDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVK 396 (591)
Q Consensus 317 g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 396 (591)
+++++...+. + .++...+..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+
T Consensus 1181 ~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaa 1244 (1630)
T 1xi4_A 1181 NRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGA 1244 (1630)
T ss_pred cCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHH
Confidence 8887544332 2 346666777888888888899998888875 36888888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048533 397 NRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCV 476 (591)
Q Consensus 397 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 476 (591)
++. .+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++.....+ +-
T Consensus 1245 rKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-ra 1312 (1630)
T 1xi4_A 1245 RKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RA 1312 (1630)
T ss_pred HHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hh
Confidence 766 36688888888888888888888766543 3456677788888888889999998888887654 33
Q ss_pred CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCc------CHHHHHHHHHHHHHcCChhHHHHH-------------
Q 048533 477 DVSVYRALIRRFCKK--EKVDYAQRLFNLMQGNGILG------DSVIYTSLAYAYWRAGEPKACSDI------------- 535 (591)
Q Consensus 477 ~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~------------- 535 (591)
....|+.+...|++. ++..++.++|..-. +++| +...|..++-.|.+.|+++.|...
T Consensus 1313 H~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~ 1390 (1630)
T 1xi4_A 1313 HMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQ 1390 (1630)
T ss_pred HhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHH
Confidence 556677777777654 33444444444322 2232 456788888888888888888732
Q ss_pred HHHHHHCCCCCCHHHHHHHHHhhhcch
Q 048533 536 LDDMYRRRLMITLKIYRSFSASYAKDN 562 (591)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~li~~~~~~~ 562 (591)
|+.... -..++..|-..+..|...+
T Consensus 1391 Fk~~i~--kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1391 FKDIIT--KVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHhc--ccccHHHHHHHHHHHHhhC
Confidence 222111 1235666666666666443
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=1.3e-18 Score=169.15 Aligned_cols=267 Identities=13% Similarity=0.025 Sum_probs=199.5
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+...++.++..+.+.|++++|+..|+++...+ |.+..++..++.+|...|++++|+..|+++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 125 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD------------------PGDAEAWQFLGITQAENENEQAAIVALQRC 125 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 35557788888888888888888888888754 344567777888888888888888888888
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHHccCChhhHHHHHHHHh
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVA---------NIHLYNVLIHACCKSSDVDKVEKLLCEME 227 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 227 (591)
.+.++. +..++..+..++...|++++|+..|+++.+..+.. ....+..+...+...|++++|...++++.
T Consensus 126 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 204 (365)
T 4eqf_A 126 LELQPN-NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAA 204 (365)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHH
T ss_pred HhcCCC-CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 887654 67788888888888888888888888887754220 11223345778888899999999998888
Q ss_pred hCCCC-cCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC-hhh
Q 048533 228 FKDVR-ADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPN-HVT 305 (591)
Q Consensus 228 ~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~ 305 (591)
..... .+..++..+...+...|++++|...|++..+.. +.+..++..+...|...|++++|...|+++....|+ ..+
T Consensus 205 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 283 (365)
T 4eqf_A 205 HQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRS 283 (365)
T ss_dssp HHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHH
Confidence 76421 156788888888889999999999998888763 336778888899999999999999999888775554 777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 306 YTTLIDGYCRANDLEEALRLREVMAAKGVY-----------PGVVTYNSILRKLCKEGRIRDANRLLNE 363 (591)
Q Consensus 306 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----------p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 363 (591)
+..+..+|...|++++|...|+++.+.... .+...|..+..++...|+.+.+..+...
T Consensus 284 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 284 RYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 888888899999999999998887764211 1256788888888889998888877664
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=3.5e-17 Score=165.01 Aligned_cols=391 Identities=9% Similarity=-0.075 Sum_probs=225.5
Q ss_pred HHHHHHHhhhcCCCChhHHHHHHHHHhhhCC------CCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHH
Q 048533 42 AIHKVLLNLYNCCHIPSLSCAFFKWAESAVP------NYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSV 115 (591)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 115 (591)
.+...|+.++...|++++|++.|+.+++..+ ..+....+|..++.+|...|++++|...++++........
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~--- 128 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS--- 128 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC---
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc---
Confidence 3556778888888999999999999976411 1233567888999999999999999999998865311000
Q ss_pred HHHHHhhcCCCCCccchHHHHHHHHHh--cCChHHHHHHHHHHhhCCCccCHHhHHHHHHH---HHhcCChhHHHHHHHH
Q 048533 116 LNALVKIHDDPDGNSHVLSWLVIFYAN--LKMTQDGLQVFDQMRVHNLMPHLHACTVLLNS---LAKDRLTDMVWKVYKK 190 (591)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~ 190 (591)
.......+.++...+.++.. .+++++|++.|+++++.++. +...+..+..+ +...++.+.|++.+++
T Consensus 129 -------~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~ 200 (472)
T 4g1t_A 129 -------SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQ 200 (472)
T ss_dssp -------CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHH
T ss_pred -------cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 00112334566666666555 45799999999999998765 66666666555 3456788899999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHc----cCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048533 191 MVQLGVVANIHLYNVLIHACCK----SSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGI 266 (591)
Q Consensus 191 ~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 266 (591)
..+.++. +..++..+...+.. .|++++|.+++++..... +.+..++..+...+...|++++|...+++..+..+
T Consensus 201 al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 278 (472)
T 4g1t_A 201 AIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP 278 (472)
T ss_dssp HHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC
Confidence 9887654 56666655555444 467889999999987764 45677888999999999999999999999988632
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 267 SPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILR 346 (591)
Q Consensus 267 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 346 (591)
-+..++..+...|...+....+.. .... .......+..+.|...++...... +.+...+..+..
T Consensus 279 -~~~~~~~~lg~~y~~~~~~~~~~~--------~~~~------~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~ 342 (472)
T 4g1t_A 279 -NNAYLHCQIGCCYRAKVFQVMNLR--------ENGM------YGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILAS 342 (472)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHC--------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHH
T ss_pred -ChHHHHHHHHHHHHHHHHHhhhHH--------HHHH------HHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHH
Confidence 256677777666543211100000 0000 000011122445555555554432 123334455555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChH--HHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048533 347 KLCKEGRIRDANRLLNEMNEKKIAPDNV--TCNTLIN-AYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKE 423 (591)
Q Consensus 347 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 423 (591)
.+...|++++|...|++.++....+... .+..+.. .....|+.++|+..|++..+.. |+..... +.
T Consensus 343 ~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~---------~~ 411 (472)
T 4g1t_A 343 LHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKE---------KM 411 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHH---------HH
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHH---------HH
Confidence 5666666666666666655543222111 1112221 1234566666666666665542 2221111 11
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048533 424 MDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRG 473 (591)
Q Consensus 424 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 473 (591)
...+..+++..+..+ +.+..+|..+..+|...|++++|++.|+++++.+
T Consensus 412 ~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 412 KDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 223334444444432 3445666777777777777777777777777654
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=1.5e-17 Score=161.56 Aligned_cols=264 Identities=9% Similarity=-0.067 Sum_probs=180.1
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 128 GNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLI 207 (591)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 207 (591)
.+...+..++..+.+.|++++|+..|+++++.++. +..++..+..++...|++++|+..|+++.+..+. +..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHH
Confidence 44556888899999999999999999999988765 7888999999999999999999999999887654 678888899
Q ss_pred HHHHccCChhhHHHHHHHHhhCCCCcCcccH----------HHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHH
Q 048533 208 HACCKSSDVDKVEKLLCEMEFKDVRADLFTY----------NTLIALYCKKGMHYEALAVQDRMEREGIS-PDIVTYNSL 276 (591)
Q Consensus 208 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----------~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l 276 (591)
.++...|++++|...++++.... +.+...+ ..+...+...|++++|...++++.+.... ++..++..+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 99999999999999999987753 1122222 23466777777777777777777765322 146677777
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048533 277 IHGFCREGRMREARRLFRDIKGATP-NHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIR 355 (591)
Q Consensus 277 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 355 (591)
...+...|++++|...|+++....| +..+|..+..+|...|++++|...|+++.+.. +.+..++..+..++...|+++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 7777777777777777777665333 35666777777777777777777777766642 224566666666666677777
Q ss_pred HHHHHHHHHHhCCCC-----------CChHHHHHHHHHHHHcCCHHHHHHH
Q 048533 356 DANRLLNEMNEKKIA-----------PDNVTCNTLINAYCKIGDTASAMKV 395 (591)
Q Consensus 356 ~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~ 395 (591)
+|...|+++.+.... .+...|..+..++...|+.+.+..+
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 349 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAA 349 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 777776666543110 0134455555555555555544443
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.5e-16 Score=160.42 Aligned_cols=393 Identities=11% Similarity=-0.064 Sum_probs=256.3
Q ss_pred CCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHH
Q 048533 75 KHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFD 154 (591)
Q Consensus 75 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 154 (591)
++...+|+.++.++...|++++|++.|++..+.. .. .......+....+|..++.+|...|++++|+..++
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~--------~~-~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ 118 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELI--------QQ-EHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVD 118 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------HH-HSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------Hh-cCccccchHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3446778899999999999999999999876521 00 00001123344567889999999999999999999
Q ss_pred HHhhCC-----C-c-cCHHhHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHccCChhhHHHH
Q 048533 155 QMRVHN-----L-M-PHLHACTVLLNSLAK--DRLTDMVWKVYKKMVQLGVVANIHLYNVLIHA---CCKSSDVDKVEKL 222 (591)
Q Consensus 155 ~~~~~~-----~-~-~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~~a~~~ 222 (591)
++.+.. . . ....++.....++.. .+++++|+..|++..+..+. +...+..+..+ +...++.++|++.
T Consensus 119 ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~ 197 (472)
T 4g1t_A 119 KVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDP 197 (472)
T ss_dssp HHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHH
T ss_pred HHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 876531 1 1 134566666655554 45789999999999987654 55555555544 3456788899999
Q ss_pred HHHHhhCCCCcCcccHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 048533 223 LCEMEFKDVRADLFTYNTLIALYCK----KGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKG 298 (591)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 298 (591)
+++..+.+ +.+..++..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|...+++...
T Consensus 198 ~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 198 LRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp HHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 98887764 3355566666555544 467788999999887764 33677888899999999999999999999887
Q ss_pred CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHH
Q 048533 299 ATPN-HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCN 377 (591)
Q Consensus 299 ~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 377 (591)
..|+ ..++..+..+|...+... .... ...........+..++|...++...+.. +.+...+.
T Consensus 276 ~~p~~~~~~~~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 338 (472)
T 4g1t_A 276 YIPNNAYLHCQIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCS 338 (472)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHH
T ss_pred hCCChHHHHHHHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhhhh
Confidence 6665 556666666553321111 1110 0000011112234678889998887763 33556788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 378 TLINAYCKIGDTASAMKVKNRMLEAGLMLDQF--TYKALIH-GFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYC 454 (591)
Q Consensus 378 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 454 (591)
.+...+...|++++|...|++..+....+... .+..+.. .....|++++|...+.+.++.. |+.....
T Consensus 339 ~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~------- 409 (472)
T 4g1t_A 339 ILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKE------- 409 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHH-------
T ss_pred hHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHH-------
Confidence 89999999999999999999998875433221 2233332 3457899999999999999854 4432222
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048533 455 NKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNG 508 (591)
Q Consensus 455 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 508 (591)
+....+.++++...+.++. ++.+|..++.+|...|++++|++.|++.++.+
T Consensus 410 --~~~~~l~~~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 410 --KMKDKLQKIAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp --HHHHHHHHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC-------------
T ss_pred --HHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2234456667777766543 78899999999999999999999999999854
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=1e-17 Score=160.03 Aligned_cols=268 Identities=14% Similarity=-0.000 Sum_probs=144.1
Q ss_pred hhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCc
Q 048533 50 LYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGN 129 (591)
Q Consensus 50 ~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (591)
.+...|++++|+..|+.+.+..|. +..++..++.++...|++++|...++++...+ +.+
T Consensus 30 ~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------------~~~ 88 (327)
T 3cv0_A 30 SMLKLANLAEAALAFEAVCQAAPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLD------------------PKD 88 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTC
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------------cCC
Confidence 333447777777777777776665 66666777777777777777777777776643 233
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HH
Q 048533 130 SHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVL-IH 208 (591)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-l~ 208 (591)
..++..++..|...|++++|++.++++.+..+. +...+..+...+ |+......+ ..
T Consensus 89 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~ 145 (327)
T 3cv0_A 89 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSED 145 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHh
Confidence 445666667777777777777777777665433 222222220000 000000011 11
Q ss_pred -HHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048533 209 -ACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMR 287 (591)
Q Consensus 209 -~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 287 (591)
.+...|++++|...++++.... +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|+++
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHH
Confidence 2444555555555555554442 2244455555555555555555555555555442 123455555555566666666
Q ss_pred HHHHHHHHhhcCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHH
Q 048533 288 EARRLFRDIKGATP-NHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYP-----------GVVTYNSILRKLCKEGRIR 355 (591)
Q Consensus 288 ~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-----------~~~~~~~ll~~~~~~~~~~ 355 (591)
+|...++++....| +..++..+..++...|++++|.+.++++.+..... +...+..+..++.+.|+.+
T Consensus 224 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (327)
T 3cv0_A 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD 303 (327)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence 66666655544333 34455555566666666666666665555432110 2445555666666666666
Q ss_pred HHHHHHHH
Q 048533 356 DANRLLNE 363 (591)
Q Consensus 356 ~a~~~~~~ 363 (591)
+|..+++.
T Consensus 304 ~A~~~~~~ 311 (327)
T 3cv0_A 304 LVELTYAQ 311 (327)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHH
Confidence 66666553
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=6.9e-18 Score=160.15 Aligned_cols=286 Identities=10% Similarity=0.063 Sum_probs=131.8
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHh
Q 048533 88 LTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHA 167 (591)
Q Consensus 88 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 167 (591)
+.+.|++++|.+.++++.. +.+|+.++.++.+.|++++|++.|.+. +|..+
T Consensus 13 l~~~~~ld~A~~fae~~~~-----------------------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~ 63 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERCNE-----------------------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSS 63 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhCCC-----------------------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHH
Confidence 4467889999999888732 247888999999999999999999753 47778
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHh
Q 048533 168 CTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCK 247 (591)
Q Consensus 168 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 247 (591)
|..++.++...|++++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|..
T Consensus 64 y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~ 134 (449)
T 1b89_A 64 YMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYD 134 (449)
T ss_dssp -----------------------------------------------CHHHHTTTTT-------CC--------------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHH
Confidence 999999999999999999977777663 3457788899999999999999888874 3677799999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 048533 248 KGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLRE 327 (591)
Q Consensus 248 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 327 (591)
.|++++|...|..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|+..|+++.|.....
T Consensus 135 ~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA----~~~~~Wk~v~~aCv~~~ef~lA~~~~l 201 (449)
T 1b89_A 135 EKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLAQMCGL 201 (449)
T ss_dssp --CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH----TCHHHHHHHHHHHHHTTCHHHHHHTTT
T ss_pred cCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc----CCchhHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999976 36889999999999999999999988 378999999999999999999966554
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCC
Q 048533 328 VMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKI--GDTASAMKVKNRMLEAGLM 405 (591)
Q Consensus 328 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~ 405 (591)
.+ ...+.....++..|.+.|++++|..+++..+... +-....|+.+.-+|++- ++..+.++.|.. +.+++
T Consensus 202 ~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~ 273 (449)
T 1b89_A 202 HI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIP 273 (449)
T ss_dssp TT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHH
T ss_pred HH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCc
Confidence 32 2344456678889999999999999999988764 44567777777777764 233444444331 11222
Q ss_pred C------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048533 406 L------DQFTYKALIHGFCKAKEMDIAKELLF 432 (591)
Q Consensus 406 ~------~~~~~~~l~~~~~~~~~~~~a~~~~~ 432 (591)
| +...|..+...|.+.++++.|....-
T Consensus 274 k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 274 KVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 2 34568888888999999998877443
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=7.6e-17 Score=153.91 Aligned_cols=232 Identities=10% Similarity=-0.052 Sum_probs=144.4
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 129 NSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIH 208 (591)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 208 (591)
+...+..++..+...|++++|+.+|+++.+..+. +..++..+..++...|+++.|...++++.+..+. +..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHH
Confidence 4566788889999999999999999999988765 7888999999999999999999999999987654 6788888999
Q ss_pred HHHccCChhhHHHHHHHHhhCCCCcCcccHHHH--------------HH-HHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 048533 209 ACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTL--------------IA-LYCKKGMHYEALAVQDRMEREGISPDIVTY 273 (591)
Q Consensus 209 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 273 (591)
.+...|++++|.+.++++.... +.+...+..+ .. .+...|++++|...++++.+... .+..++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHH
Confidence 9999999999999999988764 2334444433 11 24444555555555555544321 134445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048533 274 NSLIHGFCREGRMREARRLFRDIKGATP-NHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEG 352 (591)
Q Consensus 274 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 352 (591)
..+...+...|++++|...++++....| +..++..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 5555555555555555555555443222 23344444444444444444444444444332 113334444444444444
Q ss_pred CHHHHHHHHHHHH
Q 048533 353 RIRDANRLLNEMN 365 (591)
Q Consensus 353 ~~~~a~~~~~~~~ 365 (591)
++++|...++++.
T Consensus 255 ~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 255 QYDLAAKQLVRAI 267 (327)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 4444444444443
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=1.7e-17 Score=157.52 Aligned_cols=283 Identities=13% Similarity=0.096 Sum_probs=135.8
Q ss_pred HhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHH
Q 048533 141 ANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVE 220 (591)
Q Consensus 141 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 220 (591)
-+.|++++|.++++++. +..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|.
T Consensus 14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 35688999999999982 2349999999999999999999999763 47779999999999999999999
Q ss_pred HHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 048533 221 KLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGAT 300 (591)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 300 (591)
.+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988877664 4567889999999999999999998884 367789999999999999999999999977
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHH
Q 048533 301 PNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLI 380 (591)
Q Consensus 301 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 380 (591)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +...+.....++
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv 214 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELI 214 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHH
Confidence 48999999999999999999999988 2789999999999999999999665544 223555566799
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHH
Q 048533 381 NAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKA--KEMDIAKELLFGMLDAGFSP------SYCSYSWLVDG 452 (591)
Q Consensus 381 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~ 452 (591)
..|.+.|.+++|..+++...... +.....|+.+..+|++- +++.+..+.|..- .+++| +...|..++..
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988765 45677888887777754 3444555544422 22222 34567888899
Q ss_pred HHhcCCHHHHHHH
Q 048533 453 YCNKNNEEALLKL 465 (591)
Q Consensus 453 ~~~~g~~~~a~~~ 465 (591)
|...++++.|...
T Consensus 292 y~~~~e~d~A~~t 304 (449)
T 1b89_A 292 YDKYEEYDNAIIT 304 (449)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHhhchHHHHHHH
Confidence 9999999988774
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=2.3e-16 Score=146.87 Aligned_cols=252 Identities=13% Similarity=0.106 Sum_probs=175.3
Q ss_pred HHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhH
Q 048533 140 YANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKV 219 (591)
Q Consensus 140 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 219 (591)
....|++.+|+..++.....++.+.......+.++|...|+++.|+..++. .-+|+..++..+...+...|+.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 555788888888888776655443345666677888888888888876644 1334666777777888888888888
Q ss_pred HHHHHHHhhCCCCc-CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 048533 220 EKLLCEMEFKDVRA-DLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKG 298 (591)
Q Consensus 220 ~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 298 (591)
.+.++++...+..| +...+..+..++...|++++|++.+++ +.+..++..++..+.+.|++++|.+.|+++..
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888877665333 455566667778888888888888876 34667777788888888888888888888776
Q ss_pred CCCChhhHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHH
Q 048533 299 ATPNHVTYT---TLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVT 375 (591)
Q Consensus 299 ~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 375 (591)
..|+....+ .++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...+++.++.. +-+..+
T Consensus 159 ~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~ 236 (291)
T 3mkr_A 159 QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPET 236 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 556543221 2233344457777888777777765 34466777777777777777777777777777653 236667
Q ss_pred HHHHHHHHHHcCCHHH-HHHHHHHHHHCC
Q 048533 376 CNTLINAYCKIGDTAS-AMKVKNRMLEAG 403 (591)
Q Consensus 376 ~~~li~~~~~~~~~~~-a~~~~~~~~~~~ 403 (591)
+..++..+...|+.++ +.++++++.+..
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 7777777777777654 456777776653
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=3.6e-16 Score=145.58 Aligned_cols=246 Identities=11% Similarity=0.072 Sum_probs=110.5
Q ss_pred cCCHHHHHHHHHHhhcCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048533 283 EGRMREARRLFRDIKGATPNH--VTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRL 360 (591)
Q Consensus 283 ~g~~~~A~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 360 (591)
.|++..|+..++......|+. .....+.++|...|+++.|+..++. ..+|+..++..+...+...++.++|.+.
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~ 87 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAE 87 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence 444444444444443333322 1223334444444554444443322 1123334444444444444455555555
Q ss_pred HHHHHhCCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048533 361 LNEMNEKKIAP-DNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGF 439 (591)
Q Consensus 361 ~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 439 (591)
++++...+..| +...+..+...+...|++++|+..+++ +.+...+..++..+.+.|++++|...++++.+..
T Consensus 88 l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 160 (291)
T 3mkr_A 88 LDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD- 160 (291)
T ss_dssp HHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence 55544433222 233334444444555555555554443 2344444455555555555555555555554432
Q ss_pred CCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHH
Q 048533 440 SPSYCSY---SWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIY 516 (591)
Q Consensus 440 ~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 516 (591)
|+.... ...+..+...|++++|..+|+++.+.. +.++..++.+..++...|++++|...++++.+.. +-+..++
T Consensus 161 -p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l 237 (291)
T 3mkr_A 161 -EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETL 237 (291)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred -cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 221110 111122223355555555555555542 2245555555555555555555555555555432 2234455
Q ss_pred HHHHHHHHHcCChhH-HHHHHHHHHHC
Q 048533 517 TSLAYAYWRAGEPKA-CSDILDDMYRR 542 (591)
Q Consensus 517 ~~l~~~~~~~g~~~~-A~~~~~~~~~~ 542 (591)
..++.++...|+.++ +.++++++.+.
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 555555555555543 34555555553
No 35
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.72 E-value=1.4e-15 Score=146.37 Aligned_cols=245 Identities=11% Similarity=0.016 Sum_probs=167.8
Q ss_pred HHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCC-chHHHHHHHHHHHcCCCCchHHHHHHH
Q 048533 42 AIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKH-FKSAQNMLEKIALRDFLSTPSVLNALV 120 (591)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~ 120 (591)
.+...++.++...|++++|+..|+.+++..|+ +..+|+.++.++...|+ +++|+..|++++..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~---~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~------------ 162 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA---NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ------------ 162 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc---CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC------------
Confidence 34555566666667788888888888777776 67777777888888886 888888888777755
Q ss_pred hhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 048533 121 KIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANI 200 (591)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 200 (591)
|.+..++..+..+|...|++++|+..|+++++.++. +..+|..+..++...|++++|+..|+++++.++. +.
T Consensus 163 ------P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~ 234 (382)
T 2h6f_A 163 ------PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NN 234 (382)
T ss_dssp ------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CH
T ss_pred ------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CH
Confidence 445566777777777788888888888888777665 7777777777777788888888888887777655 66
Q ss_pred HHHHHHHHHHHc-cCChhhH-----HHHHHHHhhCCCCcCcccHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHH
Q 048533 201 HLYNVLIHACCK-SSDVDKV-----EKLLCEMEFKDVRADLFTYNTLIALYCKKG--MHYEALAVQDRMEREGISPDIVT 272 (591)
Q Consensus 201 ~~~~~ll~~~~~-~g~~~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~ 272 (591)
..|+.+..++.. .|..++| +..+++.+... +-+...|+.+..++...| ++++|++.+.++ +. .+.+...
T Consensus 235 ~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~a 311 (382)
T 2h6f_A 235 SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYL 311 (382)
T ss_dssp HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHH
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHH
Confidence 777777777777 4554666 36676666653 335566777777777766 567777777766 22 2334566
Q ss_pred HHHHHHHHHhcC---------CHHHHHHHHHHh-hcCCCC-hhhHHHHHHH
Q 048533 273 YNSLIHGFCREG---------RMREARRLFRDI-KGATPN-HVTYTTLIDG 312 (591)
Q Consensus 273 ~~~l~~~~~~~g---------~~~~A~~~~~~~-~~~~~~-~~~~~~li~~ 312 (591)
+..+...|.+.| ..++|.++++++ .+..|. ...|..+...
T Consensus 312 l~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~ 362 (382)
T 2h6f_A 312 IAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRS 362 (382)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 666777776653 246777777777 555554 3344444433
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.71 E-value=5.5e-15 Score=146.96 Aligned_cols=374 Identities=15% Similarity=0.080 Sum_probs=236.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 048533 136 LVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLT---DMVWKVYKKMVQLGVVANIHLYNVLIHACCK 212 (591)
Q Consensus 136 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 212 (591)
++..+.+.|++++|+++|+++.+.| +..++..+...+...|+. ++|...|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5667888999999999999998875 344566677777777887 8999999998864 44555566664555
Q ss_pred cC-----ChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048533 213 SS-----DVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYE---ALAVQDRMEREGISPDIVTYNSLIHGFCREG 284 (591)
Q Consensus 213 ~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 284 (591)
.| ++++|...|++....| +...+..|...|...+..+. +.+.+......| +......+...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 54 7889999999998876 44588888888887665443 455555555444 3445666777777777
Q ss_pred C----HHHHHHHHHHhhcCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CC
Q 048533 285 R----MREARRLFRDIKGATPNHVTYTTLIDGYCRAN---DLEEALRLREVMAAKGVYPGVVTYNSILRKLCKE----GR 353 (591)
Q Consensus 285 ~----~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~----~~ 353 (591)
. .+.+..+++......| .++..+...|...| +.++|++.|+...+.| .++...+..+...|... ++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~--~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTD--ICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCT--THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCC
T ss_pred CcccCHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCC
Confidence 4 4455555555544334 37888888888889 8999999999998887 34555555666666544 68
Q ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHH
Q 048533 354 IRDANRLLNEMNEKKIAPDNVTCNTLINA-Y--CKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAK-----EMD 425 (591)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~ 425 (591)
.++|...|+... . -+...+..+... + ...++.++|...|++..+.| +...+..+...|. .| +++
T Consensus 233 ~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 889999998887 3 356667777766 3 45788888988888888765 6677777777776 44 888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 048533 426 IAKELLFGMLDAGFSPSYCSYSWLVDGYCN----KNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCK----KEKVDYA 497 (591)
Q Consensus 426 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 497 (591)
+|...|++.. . -+......+...|.. ..+.++|..+|++..+.|. +.....|...|.. ..++.+|
T Consensus 305 ~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 305 AAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHH
Confidence 8888888777 3 356666667666665 3478888888888877653 3445566666653 4578888
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 498 QRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 498 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
..+|+...+.|.+ +.......+......++..+|..+.++-.+
T Consensus 378 ~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 378 YVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 8888888776532 222222222222223345556666555544
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=8.3e-16 Score=136.76 Aligned_cols=196 Identities=16% Similarity=0.079 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+..++..++..+.+.|++++|+..|+++.+.+ |.+..++..++.++.+.|++++|+..|+++
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 65 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN------------------PQDPEALYWLARTQLKLGLVNPALENGKTL 65 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS------------------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55666677777777777777777777766543 344556666666777777777777777777
Q ss_pred hhCCCccCHHhHHHHHHHHHhc-----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHH
Q 048533 157 RVHNLMPHLHACTVLLNSLAKD-----------RLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCE 225 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 225 (591)
++.++. +..++..+..++... |++++|+..|++..+..+. +...+..+..++...|++++|...|++
T Consensus 66 l~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~ 143 (217)
T 2pl2_A 66 VARTPR-YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQ 143 (217)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhCCC-cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 666544 556666666666665 5555555555554444332 334444444444444444444444444
Q ss_pred HhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 226 MEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRD 295 (591)
Q Consensus 226 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 295 (591)
..+.+ .+...+..+..++...|++++|+..|++..+..+ .+...+..+...+...|++++|...+++
T Consensus 144 al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 144 ALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC-------------
T ss_pred HHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44433 2344444444444444444444444444444311 1333444444444444444444444433
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.70 E-value=4.1e-15 Score=147.92 Aligned_cols=343 Identities=10% Similarity=-0.019 Sum_probs=166.1
Q ss_pred hhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHcCCCCchHHHHHHHhhcCCC
Q 048533 50 LYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHF---KSAQNMLEKIALRDFLSTPSVLNALVKIHDDP 126 (591)
Q Consensus 50 ~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (591)
...+.|++++|+..|+.+.+. + +..++..++.++...|.. ++|+..|++....
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~--g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~------------------- 67 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAEL--G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT------------------- 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--T---CCTGGGTCC--------------------------------------------
T ss_pred HHHhCCCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-------------------
Confidence 333447777888888777653 2 345556666666667777 7777777776542
Q ss_pred CCccchHHHHHHHHHhcC-----ChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhH---HHHHHHHHHHCCCCC
Q 048533 127 DGNSHVLSWLVIFYANLK-----MTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDM---VWKVYKKMVQLGVVA 198 (591)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~ 198 (591)
++..+..+...+...+ ++++|+..|++..+.|.. .++..|...|...+..+. +.+.+......|
T Consensus 68 --~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g--- 139 (452)
T 3e4b_A 68 --SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG--- 139 (452)
T ss_dssp -----CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---
T ss_pred --CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---
Confidence 2234455555444444 567777777777776533 256666666665544333 344444444333
Q ss_pred CHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 199 NIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKG---MHYEALAVQDRMEREGISPDIVTYNS 275 (591)
Q Consensus 199 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~ 275 (591)
+......+...|...+.++++......+...-...+..++..+...|...| +.++|++.|++..+.|. ++...+..
T Consensus 140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~ 218 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDS 218 (452)
T ss_dssp CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHH
Confidence 233444555666666644444333222211111123336666666666666 66677777777666653 34444455
Q ss_pred HHHHHHhc----CCHHHHHHHHHHhhcCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048533 276 LIHGFCRE----GRMREARRLFRDIKGATPNHVTYTTLIDG-Y--CRANDLEEALRLREVMAAKGVYPGVVTYNSILRKL 348 (591)
Q Consensus 276 l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 348 (591)
+...|... +++++|..+|++.. .-+...+..+... + ...+++++|.++|++..+.| +...+..+...|
T Consensus 219 Lg~~y~~g~~~~~d~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y 293 (452)
T 3e4b_A 219 VARVLGDATLGTPDEKTAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLY 293 (452)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 55555443 56666666666665 3344555555554 3 34566666666666666554 444555555554
Q ss_pred HhcC-----CHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 349 CKEG-----RIRDANRLLNEMNEKKIAPDNVTCNTLINAYCK----IGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFC 419 (591)
Q Consensus 349 ~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 419 (591)
. .| ++++|...|+... .| +...+..|...|.. ..+.++|...|++..+.| +......+...|.
T Consensus 294 ~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~ 365 (452)
T 3e4b_A 294 Y-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFS 365 (452)
T ss_dssp H-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHH
T ss_pred H-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHH
Confidence 4 33 5666666665555 22 44445555444443 225555555555555443 1223333333333
Q ss_pred h----cCCHHHHHHHHHHHHHCC
Q 048533 420 K----AKEMDIAKELLFGMLDAG 438 (591)
Q Consensus 420 ~----~~~~~~a~~~~~~~~~~~ 438 (591)
. .++.++|...+....+.|
T Consensus 366 ~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 366 QGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp SCTTBCCCHHHHHHHHHHHHTTC
T ss_pred hCCCCCCCHHHHHHHHHHHHHCC
Confidence 2 234445555554444443
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=6.3e-16 Score=137.54 Aligned_cols=194 Identities=13% Similarity=-0.046 Sum_probs=160.2
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhc
Q 048533 44 HKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIH 123 (591)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (591)
...++..+...|++++|+..|+.+++..|+ +..++..++.++.+.|++++|+..++++.+.+
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------- 69 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKENPQ---DPEALYWLARTQLKLGLVNPALENGKTLVART--------------- 69 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------
Confidence 344566666779999999999999998887 89999999999999999999999999999865
Q ss_pred CCCCCccchHHHHHHHHHhc-----------CChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048533 124 DDPDGNSHVLSWLVIFYANL-----------KMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMV 192 (591)
Q Consensus 124 ~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 192 (591)
|.+...+..++.+|.+. |++++|+..|++.++.++. +..++..+..++...|++++|+..|++..
T Consensus 70 ---P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al 145 (217)
T 2pl2_A 70 ---PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQAL 145 (217)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 44566788888999999 9999999999999998766 78899999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 048533 193 QLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRME 262 (591)
Q Consensus 193 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 262 (591)
+.+ .+...+..+..++...|++++|...|++..... |.+...+..+...+...|++++|+..|++.-
T Consensus 146 ~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 146 ALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred hcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 988 588999999999999999999999999998874 4467788999999999999999999988754
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.68 E-value=5.9e-15 Score=142.03 Aligned_cols=247 Identities=12% Similarity=0.041 Sum_probs=190.4
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCC-hHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKM-TQDGLQVFDQ 155 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~ 155 (591)
...++..++.++.+.|++++|+..+++++..+ |.+..++..++.++...|+ +++|+..|++
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~------------------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~ 157 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN------------------AANYTVWHFRRVLLKSLQKDLHEEMNYITA 157 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC------------------ccCHHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence 35677888889999999999999999988865 4556778888888999996 9999999999
Q ss_pred HhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCc
Q 048533 156 MRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADL 235 (591)
Q Consensus 156 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 235 (591)
+++.++. +..+|..+..++...|++++|+..|+++++.++. +...|..+..++.+.|++++|+..+++++..+ +.+.
T Consensus 158 al~l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~ 234 (382)
T 2h6f_A 158 IIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNN 234 (382)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCH
T ss_pred HHHHCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCH
Confidence 9988876 8888999999999999999999999999988766 78888888888999999999999999988875 4467
Q ss_pred ccHHHHHHHHHh-cCChhHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhhcCCC-ChhhH
Q 048533 236 FTYNTLIALYCK-KGMHYEA-----LAVQDRMEREGISPDIVTYNSLIHGFCREG--RMREARRLFRDIKGATP-NHVTY 306 (591)
Q Consensus 236 ~~~~~li~~~~~-~g~~~~a-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~-~~~~~ 306 (591)
.+|+.+..++.. .|..++| +..|++.+..... +...|+.+...+...| ++++|.+.+..+ ...| +...+
T Consensus 235 ~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al 312 (382)
T 2h6f_A 235 SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLI 312 (382)
T ss_dssp HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHH
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHH
Confidence 788888888888 5555777 4777777765322 5667777777777777 578888888777 4344 45667
Q ss_pred HHHHHHHHhcC---------CHHHHHHHHHHH-HHCCCCCC-HHHHHHHHHHH
Q 048533 307 TTLIDGYCRAN---------DLEEALRLREVM-AAKGVYPG-VVTYNSILRKL 348 (591)
Q Consensus 307 ~~li~~~~~~g---------~~~~a~~~~~~~-~~~~~~p~-~~~~~~ll~~~ 348 (591)
..+..+|.+.| ..++|.++|+.+ .+. .|. ...|..+...+
T Consensus 313 ~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 313 AFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHH
Confidence 77777777753 257888888887 554 232 33444444433
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.8e-14 Score=132.16 Aligned_cols=225 Identities=15% Similarity=0.068 Sum_probs=154.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----hHHHH
Q 048533 304 VTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIA--PD----NVTCN 377 (591)
Q Consensus 304 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 377 (591)
..+..+...+...|++++|...|+++.+.. .+...+..+..++...|++++|...++...+.... ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555566666666666666666666554 45556666666666666666666666665543211 11 45666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048533 378 TLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKN 457 (591)
Q Consensus 378 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 457 (591)
.+...+...|++++|...++++.+.. |+. ..+...|++++|...++.+.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 67777777777777777777776652 332 23455667778888887777643 234556777777788888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHH
Q 048533 458 NEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILD 537 (591)
Q Consensus 458 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 537 (591)
++++|...++++.+..+. +..++..+..++...|++++|...++++.+.. +.+...|..+..++.+.|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 888888888888776443 67788888888888888888888888887753 3356778888888888888888888888
Q ss_pred HHHHC
Q 048533 538 DMYRR 542 (591)
Q Consensus 538 ~~~~~ 542 (591)
++.+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88775
No 42
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=162.97 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=120.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 407 DQFTYKALIHGFCKAKEMDIAKELLFGMLD---AGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRA 483 (591)
Q Consensus 407 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 483 (591)
-..||+++|.+|++.|++++|.++|.+|.+ .|..||..+|++||.+|++.|++++|.++|++|.+.|+.||..||+.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456899999999999999999999987764 47889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC------HHHHHHHHH
Q 048533 484 LIRRFCKKEK-VDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMIT------LKIYRSFSA 556 (591)
Q Consensus 484 l~~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~li~ 556 (591)
+|.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.+. .+++.++++ ..++.|+ ..+-..|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9999999887 478889999999999999999999888766553 344444444 3345544 224445667
Q ss_pred hhhcchh
Q 048533 557 SYAKDNE 563 (591)
Q Consensus 557 ~~~~~~~ 563 (591)
.|.+.+.
T Consensus 281 l~s~d~~ 287 (1134)
T 3spa_A 281 VYAKDGR 287 (1134)
T ss_dssp HHCCCSC
T ss_pred HHccCCC
Confidence 7777654
No 43
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=4.7e-17 Score=166.74 Aligned_cols=162 Identities=12% Similarity=0.117 Sum_probs=130.2
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHH
Q 048533 164 HLHACTVLLNSLAKDRLTDMVWKVYKKMVQ---LGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNT 240 (591)
Q Consensus 164 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (591)
...+|+.+|++|++.|++++|.++|.+|.+ .|+.||..+||.||.+|++.|++++|.++|++|...|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456899999999999999999999988764 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc-CCC------ChhhHHHHHHH
Q 048533 241 LIALYCKKGMH-YEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKG-ATP------NHVTYTTLIDG 312 (591)
Q Consensus 241 li~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~~~li~~ 312 (591)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+.+ +++..+++.. ..| ...+...+.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHhCcccCCCCCCcccccchHHHHHH
Confidence 99999999985 789999999999999999999999987665543 3333333321 222 24445556667
Q ss_pred HHhcC---------CHHHHHHHHHHH
Q 048533 313 YCRAN---------DLEEALRLREVM 329 (591)
Q Consensus 313 ~~~~g---------~~~~a~~~~~~~ 329 (591)
|.+.+ ..++-...|++-
T Consensus 282 ~s~d~~~s~pk~~~~~~~L~~~~~~Q 307 (1134)
T 3spa_A 282 YAKDGRVSYPKLHLPLKTLQCLFEKQ 307 (1134)
T ss_dssp HCCCSCCCCCCCSSCHHHHHHHHHHH
T ss_pred HccCCCCcCccccCCHHHHHHHHHHH
Confidence 76655 235555555543
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.65 E-value=2.1e-15 Score=139.93 Aligned_cols=250 Identities=10% Similarity=-0.039 Sum_probs=179.9
Q ss_pred cCCCChhHHHHHHHHHhhhCCCC-CCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCcc
Q 048533 52 NCCHIPSLSCAFFKWAESAVPNY-KHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNS 130 (591)
Q Consensus 52 ~~~~~~~~A~~~f~~~~~~~p~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (591)
...+++++|+..|+.+.+..|.. +.+..++..++.++...|++++|...|+++...+ +.+.
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------------------~~~~ 77 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR------------------PDMP 77 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------CCCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC------------------CCcH
Confidence 34578999999999998754321 1246777889999999999999999999988764 3455
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048533 131 HVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHAC 210 (591)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 210 (591)
.++..++..|...|++++|+..|+++.+.++. +..++..+..++...|++++|...|+++.+..+ +.......+..+
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~ 154 (275)
T 1xnf_A 78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--NDPFRSLWLYLA 154 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CChHHHHHHHHH
Confidence 67888888999999999999999999987654 678888899999999999999999999988653 333344444555
Q ss_pred HccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHH
Q 048533 211 CKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISP---DIVTYNSLIHGFCREGRMR 287 (591)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~ 287 (591)
...|++++|...+++..... +++...+ .++..+...++.++|...+.+........ +..++..+...+...|+++
T Consensus 155 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 232 (275)
T 1xnf_A 155 EQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLD 232 (275)
T ss_dssp HHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHH
Confidence 67788999998887776653 3344443 46666777778888888888776542110 1456777777888888888
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048533 288 EARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLR 326 (591)
Q Consensus 288 ~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 326 (591)
+|...|++.....|+.. .....++...|++++|++.+
T Consensus 233 ~A~~~~~~al~~~p~~~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 233 SATALFKLAVANNVHNF--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHTTCCTTC--HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhCCchhH--HHHHHHHHHHHHHHhhHHHH
Confidence 88888888776555432 22244555667777766655
No 45
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.6e-14 Score=131.02 Aligned_cols=220 Identities=12% Similarity=0.047 Sum_probs=92.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC--------hhhHHH
Q 048533 237 TYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPN--------HVTYTT 308 (591)
Q Consensus 237 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~ 308 (591)
.+..+...+...|++++|...|++..+.. .+..++..+...+...|++++|...+++.....|+ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444444555555555555555554443 34444555555555555555555555544331111 234444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCC
Q 048533 309 LIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGD 388 (591)
Q Consensus 309 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 388 (591)
+...+...|++++|...++++.+. .|+. ..+...|++++|...++.+.... +.+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 444555555555555555544443 1221 12333344444444444444431 1122333344444444444
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 389 TASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDE 468 (591)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 468 (591)
+++|...++++.+.. +.+...+..+...+...|++++|...++++++.. +.+...+..+..++...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 444444444443332 1123333334444444444444444444443322 11233333333333334444444443333
Q ss_pred HH
Q 048533 469 FV 470 (591)
Q Consensus 469 ~~ 470 (591)
+.
T Consensus 233 a~ 234 (258)
T 3uq3_A 233 AR 234 (258)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=2.2e-14 Score=132.84 Aligned_cols=234 Identities=9% Similarity=-0.030 Sum_probs=139.3
Q ss_pred HhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCC
Q 048533 48 LNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPD 127 (591)
Q Consensus 48 ~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (591)
+..+...|++++|+..|+.+.+..|. +..++..++.++...|++++|+..++++.... . .+.
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~--------------~~~ 71 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKKYN---SPYIYNRRAVCYYELAKYDLAQKDIETYFSKV-N--------------ATK 71 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTTCC---CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS-C--------------TTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-C--------------chh
Confidence 33444557777777777777766665 55566677777777777777777777766521 0 111
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 128 GNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLI 207 (591)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 207 (591)
....++..++..|...|++++|++.|+++.+.++. +..++..+...+...|++++|+..|++..+..+. +...+..+.
T Consensus 72 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~ 149 (272)
T 3u4t_A 72 AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELG 149 (272)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHH
Confidence 12234566667777777777777777777766544 5566667777777777777777777776665332 455555555
Q ss_pred HHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCC---hhHHHHHHHHHHHCC-CCCC------HHHHHHHH
Q 048533 208 HACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGM---HYEALAVQDRMEREG-ISPD------IVTYNSLI 277 (591)
Q Consensus 208 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~p~------~~~~~~l~ 277 (591)
..+...+++++|.+.|++..+.. +.+...+..+..++...|+ +++|...+++..+.. -.|+ ..+|..+.
T Consensus 150 ~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 228 (272)
T 3u4t_A 150 QAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIA 228 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 23333446777777777666543 2234555556666666666 666666666655431 0122 13455556
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCC
Q 048533 278 HGFCREGRMREARRLFRDIKGATPN 302 (591)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~~~~~~~ 302 (591)
..|...|++++|...|++.....|+
T Consensus 229 ~~~~~~~~~~~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 229 YYYTINRDKVKADAAWKNILALDPT 253 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 6666666666666666666554443
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=4.7e-14 Score=130.56 Aligned_cols=234 Identities=9% Similarity=0.019 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
..++...+..+...|++++|+..|+++.+.+ |.+..++..++..|...|++++|++.++++.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~------------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 64 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK------------------YNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT------------------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------------------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3456677888888899999998888887754 3445677778888888888888888888888
Q ss_pred hCCCccC--HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCc
Q 048533 158 VHNLMPH--LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADL 235 (591)
Q Consensus 158 ~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 235 (591)
+....|+ ..+|..+...+...|++++|+..|++..+..+. +..++..+...+...|++++|...+++..... +.+.
T Consensus 65 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~ 142 (272)
T 3u4t_A 65 SKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDP 142 (272)
T ss_dssp TTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCH
T ss_pred hccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcH
Confidence 7432222 334778888888888888888888888876554 56777888888888888888888888877663 3455
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhcC---CCCh------
Q 048533 236 FTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGR---MREARRLFRDIKGA---TPNH------ 303 (591)
Q Consensus 236 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~---~~~~------ 303 (591)
.+|..+...+...+++++|.+.|++..+... .+...+..+...+...|+ +++|...+++.... .|+.
T Consensus 143 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 221 (272)
T 3u4t_A 143 KVFYELGQAYYYNKEYVKADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELI 221 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHH
Confidence 5666666344445588888888888777532 235666667777777776 66677777666531 1331
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 304 VTYTTLIDGYCRANDLEEALRLREVMAAK 332 (591)
Q Consensus 304 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 332 (591)
.+|..+...|...|++++|.+.+++..+.
T Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 222 EANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 35666667777777777777777777665
No 48
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.64 E-value=7.2e-12 Score=128.64 Aligned_cols=440 Identities=10% Similarity=0.027 Sum_probs=259.2
Q ss_pred ChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHH
Q 048533 56 IPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSW 135 (591)
Q Consensus 56 ~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (591)
.+.+-+..|+..+..+|. +..+|..++..+.+.+.++.+..+|+++.... |.....+..
T Consensus 47 ~~~d~i~~lE~~l~~np~---d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f------------------P~~~~lW~~ 105 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPT---DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF------------------PLMANIWCM 105 (679)
T ss_dssp CCSCHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC------------------CCCHHHHHH
Confidence 456678888888888886 99999999999999999999999999999865 344455666
Q ss_pred HHHHHHhcCC---hHHHHHHHHHHhhCCC-ccCHHhHHHHHHHHHhcCCh--------hHHHHHHHHHHH-CCC-CC-CH
Q 048533 136 LVIFYANLKM---TQDGLQVFDQMRVHNL-MPHLHACTVLLNSLAKDRLT--------DMVWKVYKKMVQ-LGV-VA-NI 200 (591)
Q Consensus 136 l~~~~~~~~~---~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~ 200 (591)
-+..-.+.++ ++.+..+|++.+...+ .|++..|...+....+.++. +.+.++|+..+. .|. .+ +.
T Consensus 106 Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~ 185 (679)
T 4e6h_A 106 RLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSI 185 (679)
T ss_dssp HHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCH
T ss_pred HHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccch
Confidence 6677777888 9999999999998752 47888999888877766554 335578887664 455 44 45
Q ss_pred HHHHHHHHHHHc---------cCChhhHHHHHHHHhhCCCCcC--cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 048533 201 HLYNVLIHACCK---------SSDVDKVEKLLCEMEFKDVRAD--LFTYNTLIALYCKKGMHYEALAVQDRMEREGISPD 269 (591)
Q Consensus 201 ~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 269 (591)
..|...+..... .++++.+..+|++.+.. |.. ..+|..........+. ..+.+++.+.
T Consensus 186 ~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i--P~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~-------- 254 (679)
T 4e6h_A 186 QFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ--PMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL-------- 254 (679)
T ss_dssp HHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS--CCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH--------
T ss_pred HHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh--------
Confidence 688888876542 34567888999998853 222 1223222111111011 1111111110
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhc-------CC------------C--C------hhhHHHHHHHHHhcC-----
Q 048533 270 IVTYNSLIHGFCREGRMREARRLFRDIKG-------AT------------P--N------HVTYTTLIDGYCRAN----- 317 (591)
Q Consensus 270 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~------------~--~------~~~~~~li~~~~~~g----- 317 (591)
..+++.|...+.++.. .- | + ...|...+..--..+
T Consensus 255 -------------~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~ 321 (679)
T 4e6h_A 255 -------------SAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSD 321 (679)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCH
T ss_pred -------------hHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccc
Confidence 0112222222222110 00 0 0 122333333222211
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 048533 318 --DLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDAN-RLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMK 394 (591)
Q Consensus 318 --~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 394 (591)
..+.+..+|+++... ++-....|...+..+...|+.++|. .+|+..... .+.+...|...+....+.|+++.|..
T Consensus 322 ~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~ 399 (679)
T 4e6h_A 322 DLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIET 399 (679)
T ss_dssp HHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 123344556666554 2335556666666666666666665 777766653 33455556666666667777777777
Q ss_pred HHHHHHHCC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048533 395 VKNRMLEAG---------LMLD------------QFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGY 453 (591)
Q Consensus 395 ~~~~~~~~~---------~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (591)
+|+.+.... ..|+ ...|...+....+.|+.+.|..+|..+++....+....|...+..-
T Consensus 400 iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE 479 (679)
T 4e6h_A 400 TILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIE 479 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 777665431 0121 2346666666666677777777777776641112223333222222
Q ss_pred Hhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc--CHHHHHHHHHHHHHcCChh
Q 048533 454 CNK-NNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILG--DSVIYTSLAYAYWRAGEPK 530 (591)
Q Consensus 454 ~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~ 530 (591)
.+. ++.+.|.++|+..++. .+-+...|...+......|+.+.|+.+|++.......+ ....|...+..-.+.|+.+
T Consensus 480 ~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~ 558 (679)
T 4e6h_A 480 YHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLN 558 (679)
T ss_dssp HTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSH
T ss_pred HHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 232 3467777777777765 33356666666766666777777777777777653211 2356677777777777777
Q ss_pred HHHHHHHHHHHCC
Q 048533 531 ACSDILDDMYRRR 543 (591)
Q Consensus 531 ~A~~~~~~~~~~~ 543 (591)
.+.++.+++.+.-
T Consensus 559 ~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 559 SVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhC
Confidence 7777777777753
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=1.5e-12 Score=120.43 Aligned_cols=224 Identities=11% Similarity=0.015 Sum_probs=169.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChHHHH
Q 048533 302 NHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCK----EGRIRDANRLLNEMNEKKIAPDNVTCN 377 (591)
Q Consensus 302 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 377 (591)
+..++..+...+...|++++|...|++..+.+ +...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34555666666777777777777777776632 45566666667777 777777777777777764 566777
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048533 378 TLINAYCK----IGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCK----AKEMDIAKELLFGMLDAGFSPSYCSYSWL 449 (591)
Q Consensus 378 ~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 449 (591)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 778888888888777764 66777777777777 788888888888888754 45666777
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 048533 450 VDGYCN----KNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCK----KEKVDYAQRLFNLMQGNGILGDSVIYTSLAY 521 (591)
Q Consensus 450 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 521 (591)
...|.. .+++++|...+++..+.+ ++..+..+...|.. .+++++|...+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777 788888888888888764 56777788888888 888889988888888764 3667777888
Q ss_pred HHHH----cCChhHHHHHHHHHHHCC
Q 048533 522 AYWR----AGEPKACSDILDDMYRRR 543 (591)
Q Consensus 522 ~~~~----~g~~~~A~~~~~~~~~~~ 543 (591)
+|.. .+++++|.+.|++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8888 888999999999888876
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=3.3e-13 Score=124.93 Aligned_cols=223 Identities=15% Similarity=0.017 Sum_probs=138.0
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHh----cCChHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYAN----LKMTQDGLQV 152 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~ 152 (591)
+..++..++..+...|++++|+..|+++.+.+ +...+..++..|.. .+++++|+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~ 64 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--------------------ENSGCFNLGVLYYQGQGVEKNLKKAASF 64 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--------------------CHHHHHHHHHHHHcCCCcCCCHHHHHHH
Confidence 56666677777777777777777777666521 22345556666666 7777777777
Q ss_pred HHHHhhCCCccCHHhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhhHHHHHH
Q 048533 153 FDQMRVHNLMPHLHACTVLLNSLAK----DRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCK----SSDVDKVEKLLC 224 (591)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~ 224 (591)
|++..+.+ +..++..+...+.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|+
T Consensus 65 ~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~ 138 (273)
T 1ouv_A 65 YAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFT 138 (273)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 77776654 55566666666666 677777777777766653 45556666666666 666666666666
Q ss_pred HHhhCCCCcCcccHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHh
Q 048533 225 EMEFKDVRADLFTYNTLIALYCK----KGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCR----EGRMREARRLFRDI 296 (591)
Q Consensus 225 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 296 (591)
+..+.+ +..++..+...+.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++.
T Consensus 139 ~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a 212 (273)
T 1ouv_A 139 KACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKA 212 (273)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred HHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 666554 34455556666665 666666666666666542 34555556666666 66666666666665
Q ss_pred hcCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 048533 297 KGATPNHVTYTTLIDGYCR----ANDLEEALRLREVMAAK 332 (591)
Q Consensus 297 ~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~ 332 (591)
....| ...+..+...|.. .+++++|.+.|++..+.
T Consensus 213 ~~~~~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 213 CELEN-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHTTC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HhCCC-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 54322 4445555555555 55666666666655554
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.63 E-value=9.4e-14 Score=124.33 Aligned_cols=206 Identities=10% Similarity=-0.074 Sum_probs=122.7
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+..++..++..+...|++++|...++++.... +.+..++..++..|...|++++|++.++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 68 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD------------------PKNELAWLVRAEIYQYLKVNDKAQESFRQA 68 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC------------------ccchHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 45666667777777777777777777766643 223345666666677777777777777776
Q ss_pred hhCCCccCHHhHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcC
Q 048533 157 RVHNLMPHLHACTVLLNSLAKD-RLTDMVWKVYKKMVQLGVVAN-IHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRAD 234 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 234 (591)
.+..+. +..++..+...+... |+++.|...++.+.+.+..|+ ...+..+...+...|++++|...++++.... +.+
T Consensus 69 ~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 146 (225)
T 2vq2_A 69 LSIKPD-SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQF 146 (225)
T ss_dssp HHHCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred HHhCCC-ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 665443 555666666666666 667777766666666221222 3455556666666666666666666665542 223
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 048533 235 LFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPN 302 (591)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 302 (591)
...+..+..++...|++++|...++++.+.....+...+..+...+...|+.++|..+++.+....|+
T Consensus 147 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 214 (225)
T 2vq2_A 147 PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY 214 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence 45555666666666666666666666555422124445555555555566666666666655543444
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=1e-13 Score=126.58 Aligned_cols=205 Identities=9% Similarity=-0.045 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
..++..++..+...|++++|...|+++...+ +.+..++..++..|...|++++|++.|+++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 98 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID------------------PSSADAHAALAVVFQTEMEPKLADEEYRKAL 98 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------------------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5667788888889999999999998887754 3344567777888888888888888888888
Q ss_pred hCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcc
Q 048533 158 VHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVA-NIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLF 236 (591)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 236 (591)
+.++. +...+..+...+...|++++|.+.++++.+.+..| +...+..+...+...|++++|...+++..... +.+..
T Consensus 99 ~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 176 (252)
T 2ho1_A 99 ASDSR-NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPS 176 (252)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHH
T ss_pred HHCcC-cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHH
Confidence 77544 66777777788888888888888888877622223 34566666777777777777777777766653 33455
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCh
Q 048533 237 TYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNH 303 (591)
Q Consensus 237 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 303 (591)
++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.++++++....|+.
T Consensus 177 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 177 VALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 66667777777777777777777766542 2345556666666666777777777777666544443
No 53
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.63 E-value=2e-11 Score=125.34 Aligned_cols=425 Identities=9% Similarity=0.011 Sum_probs=261.5
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCC---hhHHHHHHHHHHHCCC-CCCHHH
Q 048533 127 DGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRL---TDMVWKVYKKMVQLGV-VANIHL 202 (591)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~ 202 (591)
|.+...+..++....+.+.++.+..+|++++..-+. ....|...+..-.+.++ ++.+.++|++.+...+ .|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~-~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL-MANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 345556666777777777777777777777776443 56667777777777777 7777777777776541 356667
Q ss_pred HHHHHHHHHccCCh--------hhHHHHHHHHhh-CCC-CcC-cccHHHHHHHHH---------hcCChhHHHHHHHHHH
Q 048533 203 YNVLIHACCKSSDV--------DKVEKLLCEMEF-KDV-RAD-LFTYNTLIALYC---------KKGMHYEALAVQDRME 262 (591)
Q Consensus 203 ~~~ll~~~~~~g~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~li~~~~---------~~g~~~~a~~~~~~~~ 262 (591)
|...+....+.++. +.+.++|+.... .|. .++ ...|...+.... ..++.+.+..+|++.+
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 76666655544443 223355555432 343 332 345555555432 2234555666666666
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC----C-
Q 048533 263 REGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAK--GV----Y- 335 (591)
Q Consensus 263 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~----~- 335 (591)
......-..+|......-...+. ..+.+++.+. ..+++.|...+.++... ++ +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~-------------------~~~y~~Ar~~~~e~~~~~~~l~r~~p~ 281 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL-------------------SAQYMNARSLYQDWLNITKGLKRNLPI 281 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH-------------------HHHHHHHHHHHHHHHHHTTTCCCCCCS
T ss_pred hCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh-------------------hHHHHHHHHHHHHHHHHHHhHhhcccc
Confidence 42111111222211111000000 0011111111 12333444444432210 11 0
Q ss_pred ----------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHH
Q 048533 336 ----------P-----G---VVTYNSILRKLCKEG-------RIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTA 390 (591)
Q Consensus 336 ----------p-----~---~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 390 (591)
| + ...|...+..--..+ ..+.+..+|++++.. .+-+...|...+..+...|+.+
T Consensus 282 ~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~ 360 (679)
T 4e6h_A 282 TLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDS 360 (679)
T ss_dssp SSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCT
T ss_pred ccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHH
Confidence 1 1 134555554333322 134567789888876 4558889999999999999999
Q ss_pred HHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCCC------------HHHHHH
Q 048533 391 SAM-KVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAG---------FSPS------------YCSYSW 448 (591)
Q Consensus 391 ~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~------------~~~~~~ 448 (591)
+|. .+|++..... +.+...+...+....+.|++++|..+|+.++... ..|+ ..+|..
T Consensus 361 ~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~ 439 (679)
T 4e6h_A 361 TVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCV 439 (679)
T ss_dssp THHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHH
Confidence 997 9999998753 4567777788888889999999999999988631 0132 346777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcC
Q 048533 449 LVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKK-EKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAG 527 (591)
Q Consensus 449 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 527 (591)
.+....+.|+.+.|..+|..+.+.........|...+..-.+. ++++.|.++|+...+. .+-+...|...++.....|
T Consensus 440 y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~ 518 (679)
T 4e6h_A 440 YMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVN 518 (679)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCC
Confidence 7888888999999999999999861222344444433333344 4599999999999986 4556778888999888999
Q ss_pred ChhHHHHHHHHHHHCCCCC--CHHHHHHHHHhhhcchhHHH--HHHHHHHhc
Q 048533 528 EPKACSDILDDMYRRRLMI--TLKIYRSFSASYAKDNEILD--LFWSHVVDR 575 (591)
Q Consensus 528 ~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~--~~~~~~~~~ 575 (591)
+.+.|..+|++++.....+ ....|..+++.-.+.|+... .+.+++.+.
T Consensus 519 ~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 519 EESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp CHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999975432 23478888877777776543 455666543
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=1e-13 Score=126.60 Aligned_cols=200 Identities=13% Similarity=-0.026 Sum_probs=173.5
Q ss_pred HHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHh
Q 048533 42 AIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVK 121 (591)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 121 (591)
.....++..+...|++++|+..|+.+.+..|. +..++..++.++...|++++|...++++...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------------- 101 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS---SADAHAALAVVFQTEMEPKLADEEYRKALASD------------- 101 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------------
Confidence 34556677777789999999999999998876 78899999999999999999999999998764
Q ss_pred hcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCcc-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 048533 122 IHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMP-HLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANI 200 (591)
Q Consensus 122 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 200 (591)
+.+..++..++..|...|++++|++.++++.+.+..| +...+..+...+...|++++|...++++.+.... +.
T Consensus 102 -----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 175 (252)
T 2ho1_A 102 -----SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QP 175 (252)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CH
T ss_pred -----cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cH
Confidence 3345678888999999999999999999999832233 5678888999999999999999999999987654 67
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 201 HLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 201 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
..+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.+.++++.+.
T Consensus 176 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 176 SVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888999999999999999999999998764 456777888999999999999999999999886
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=1.3e-14 Score=134.59 Aligned_cols=248 Identities=8% Similarity=-0.090 Sum_probs=171.9
Q ss_pred HhcCChHHHHHHHHHHhhCCC---ccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh
Q 048533 141 ANLKMTQDGLQVFDQMRVHNL---MPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVD 217 (591)
Q Consensus 141 ~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 217 (591)
...|++++|+..|+++.+... +.+..++..+...+...|++++|...|+++.+.++. +..++..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHH
Confidence 345888999999999988632 124667888889999999999999999999887654 6788888888999999999
Q ss_pred hHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048533 218 KVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIK 297 (591)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 297 (591)
+|...+++..... +.+..++..+..++...|++++|...|+++.+. .|+.......+..+...|++++|...+....
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999888764 346778888888888899999999998888875 3443344444445566788888888887766
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH
Q 048533 298 GATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYP---GVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNV 374 (591)
Q Consensus 298 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 374 (591)
...|+......++..+...++.++|...+.......... +...+..+...+...|++++|...+++..+.. |+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~- 248 (275)
T 1xnf_A 172 EKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN- 248 (275)
T ss_dssp HHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT-
T ss_pred hcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh-
Confidence 533433333346667777777888888887776542110 13556666667777777777777777776652 211
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 048533 375 TCNTLINAYCKIGDTASAMKVK 396 (591)
Q Consensus 375 ~~~~li~~~~~~~~~~~a~~~~ 396 (591)
+.....++...|++++|+..+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 222234455556666655544
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.61 E-value=3.6e-14 Score=128.86 Aligned_cols=194 Identities=11% Similarity=0.024 Sum_probs=125.8
Q ss_pred HHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCC
Q 048533 47 LLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDP 126 (591)
Q Consensus 47 l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (591)
++..+...|++++|+..|+.+.+..|. +..++..++.++...|++++|+..++++....
T Consensus 29 ~a~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------------------ 87 (243)
T 2q7f_A 29 QMGRGSEFGDYEKAAEAFTKAIEENKE---DAIPYINFANLLSSVNELERALAFYDKALELD------------------ 87 (243)
T ss_dssp -------------CCTTHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------
Confidence 344555567788888888887776665 67777777888888888888888887777653
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 048533 127 DGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVL 206 (591)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 206 (591)
+.+..++..++..|...|++++|++.++++.+.++. +...+..+...+...|++++|...++++.+.... +...+..+
T Consensus 88 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 165 (243)
T 2q7f_A 88 SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQF 165 (243)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHH
Confidence 233455666777777777777777777777776543 5666777777777777777777777777765443 55666666
Q ss_pred HHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 207 IHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 207 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
...+.+.|++++|...+++..... +.+..++..+..++...|++++|...++++.+.
T Consensus 166 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 166 GMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 777777777777777777766543 334556666666677777777777777766654
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=1.5e-13 Score=122.94 Aligned_cols=203 Identities=10% Similarity=-0.033 Sum_probs=173.0
Q ss_pred hHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHH
Q 048533 40 STAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNAL 119 (591)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (591)
...+...++..+...|++++|+..|+.+.+..|. +..++..++.++...|++++|...++++....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----------- 72 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK---NELAWLVRAEIYQYLKVNDKAQESFRQALSIK----------- 72 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----------
Confidence 3445566677777789999999999999998876 78889999999999999999999999998754
Q ss_pred HhhcCCCCCccchHHHHHHHHHhc-CChHHHHHHHHHHhhCCCcc-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 120 VKIHDDPDGNSHVLSWLVIFYANL-KMTQDGLQVFDQMRVHNLMP-HLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV 197 (591)
Q Consensus 120 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (591)
+.+..++..++..|... |++++|+..++++.+.+..| +...+..+..++...|++++|...++++.+..+.
T Consensus 73 -------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 145 (225)
T 2vq2_A 73 -------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ 145 (225)
T ss_dssp -------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred -------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 33456778889999999 99999999999999832223 3678889999999999999999999999987654
Q ss_pred CCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 198 ANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 198 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
+...+..+...+.+.|++++|...+++........+...+..+...+...|+.+.+..+++.+.+.
T Consensus 146 -~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 146 -FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 678889999999999999999999999887642146777888888889999999999999998765
No 58
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=3.2e-13 Score=122.47 Aligned_cols=201 Identities=13% Similarity=0.105 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 338 VVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHG 417 (591)
Q Consensus 338 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 417 (591)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3445555566666677777777777766642 2356666777777777777777777777776653 2356677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048533 418 FCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYA 497 (591)
Q Consensus 418 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 497 (591)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHH
Confidence 777888888888887777654 345667777778888888888888888888776433 677788888888888888888
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 498 QRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 498 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
...++++.+.. +.+..++..+..+|...|++++|...++++.+..
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 88888887752 3356778888888888888888888888888864
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=6.4e-13 Score=125.21 Aligned_cols=221 Identities=9% Similarity=-0.024 Sum_probs=170.7
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH-------cCCCc-------hHHHHHHHHHHH-cCCCCchHHHHHHHhh
Q 048533 58 SLSCAFFKWAESAVPNYKHSLQSHWTMIHILT-------KNKHF-------KSAQNMLEKIAL-RDFLSTPSVLNALVKI 122 (591)
Q Consensus 58 ~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~~~~~ 122 (591)
++|+..|+.++...|. +..+|..++..+. +.|++ ++|..+|+++.. .+
T Consensus 33 ~~a~~~~~~al~~~p~---~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-------------- 95 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH---HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-------------- 95 (308)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT--------------
T ss_pred HHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC--------------
Confidence 6899999999998887 8999998888775 45886 899999999887 33
Q ss_pred cCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHH-hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 048533 123 HDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLH-ACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIH 201 (591)
Q Consensus 123 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 201 (591)
|.+..++..++..+.+.|++++|.++|+++++..+. +.. +|..++..+.+.|+++.|..+|++..+.++. +..
T Consensus 96 ----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~ 169 (308)
T 2ond_A 96 ----KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHH 169 (308)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTH
T ss_pred ----cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHH
Confidence 345567778888899999999999999999986543 343 7888888888899999999999999887543 455
Q ss_pred HHHHHHHHHH-ccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC--CHHHHHHHH
Q 048533 202 LYNVLIHACC-KSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREG-ISP--DIVTYNSLI 277 (591)
Q Consensus 202 ~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p--~~~~~~~l~ 277 (591)
.|........ ..|++++|..+|++..+.. +.+...|..++..+.+.|++++|..+|++..... .+| ....|..++
T Consensus 170 ~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~ 248 (308)
T 2ond_A 170 VYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 248 (308)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 5544433322 3688888888888887653 3456778888888888888888888888888763 344 456777788
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCC
Q 048533 278 HGFCREGRMREARRLFRDIKGATPN 302 (591)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~~~~~~~ 302 (591)
....+.|+.+.|..+++++.+..|+
T Consensus 249 ~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 249 AFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHccc
Confidence 8888888888888888887764554
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.57 E-value=5.7e-14 Score=138.66 Aligned_cols=202 Identities=12% Similarity=-0.096 Sum_probs=123.3
Q ss_pred HHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCH----HHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHh
Q 048533 46 VLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSL----QSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVK 121 (591)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 121 (591)
.++..+...|++++|+..|+.+++..|+ +. .++..++.++...|++++|+..++++......
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----------- 118 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE---DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKS----------- 118 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----------
Confidence 4556666779999999999999887775 43 46778899999999999999999887653100
Q ss_pred hcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC-----CccCHHhHHHHHHHHHhcCC----------------
Q 048533 122 IHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN-----LMPHLHACTVLLNSLAKDRL---------------- 180 (591)
Q Consensus 122 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~---------------- 180 (591)
..+.+....++..++..|...|++++|+..++++.+.. ......++..+...+...|+
T Consensus 119 -~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~ 197 (411)
T 4a1s_A 119 -MNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKE 197 (411)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHH
T ss_pred -ccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhH
Confidence 01112234567778888889999999998888876641 11134466777777777777
Q ss_pred -hhHHHHHHHHHHHCC----C-CCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCC-cC----cccHHHHHHHHHhcC
Q 048533 181 -TDMVWKVYKKMVQLG----V-VANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVR-AD----LFTYNTLIALYCKKG 249 (591)
Q Consensus 181 -~~~a~~~~~~~~~~~----~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g 249 (591)
++.|++.+++..+.. . .....++..+...+...|++++|...+++....... .+ ..++..+..++...|
T Consensus 198 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 277 (411)
T 4a1s_A 198 ALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLG 277 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCc
Confidence 666666666654321 0 011224445555555566666666555554432100 00 113444444455555
Q ss_pred ChhHHHHHHHHHH
Q 048533 250 MHYEALAVQDRME 262 (591)
Q Consensus 250 ~~~~a~~~~~~~~ 262 (591)
++++|...+++..
T Consensus 278 ~~~~A~~~~~~al 290 (411)
T 4a1s_A 278 QFEDAAEHYKRTL 290 (411)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555544443
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.55 E-value=1.5e-13 Score=131.31 Aligned_cols=170 Identities=9% Similarity=-0.100 Sum_probs=106.8
Q ss_pred HHHhhhcCCCChhHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcC
Q 048533 46 VLLNLYNCCHIPSLSCAFFKWAESAVPNYKHS-LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHD 124 (591)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (591)
..+..+...|++++|+..|+.+.+..|..+.. ..++..++..+...|++++|...++++...... ..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------------~~ 77 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART------------IG 77 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------HT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc------------cc
Confidence 34555566799999999999998877651110 356778899999999999999999887653100 01
Q ss_pred CCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc-cC----HHhHHHHHHHHHhcCC-------------------
Q 048533 125 DPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLM-PH----LHACTVLLNSLAKDRL------------------- 180 (591)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~------------------- 180 (591)
+.+....++..++..|...|++++|+..++++.+.... ++ ..++..+...+...|+
T Consensus 78 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 157 (338)
T 3ro2_A 78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN 157 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHH
Confidence 11223456777888888899999999888887654211 11 3366677777777777
Q ss_pred -hhHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHccCChhhHHHHHHHHh
Q 048533 181 -TDMVWKVYKKMVQL----GVV-ANIHLYNVLIHACCKSSDVDKVEKLLCEME 227 (591)
Q Consensus 181 -~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 227 (591)
++.|.+.+++..+. +.. ....++..+...+...|++++|...+++..
T Consensus 158 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 210 (338)
T 3ro2_A 158 ALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 210 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 66666666655432 100 012234444555555555555555555543
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=4.8e-13 Score=131.64 Aligned_cols=281 Identities=11% Similarity=-0.057 Sum_probs=153.5
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 048533 44 HKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHS-LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKI 122 (591)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (591)
...++..+...|++++|+..|+.+++..|..+.. ..++..++..+...|++++|...++++......
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------------ 79 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART------------ 79 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh------------
Confidence 3445666666789999999999998877651111 356778888999999999999998887653100
Q ss_pred cCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc-cC----HHhHHHHHHHHHhcCC-----------------
Q 048533 123 HDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLM-PH----LHACTVLLNSLAKDRL----------------- 180 (591)
Q Consensus 123 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~----------------- 180 (591)
..+.+....++..++..|...|++++|+..++++.+.... ++ ..++..+...+...|+
T Consensus 80 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a 159 (406)
T 3sf4_A 80 IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV 159 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHH
T ss_pred ccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhH
Confidence 0111223456777888888889999998888887664211 11 3366667777777777
Q ss_pred ---hhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChh
Q 048533 181 ---TDMVWKVYKKMVQL----GVVA-NIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHY 252 (591)
Q Consensus 181 ---~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 252 (591)
++.|...+++..+. +..+ ...++..+...+...|++++|...+++....... ...
T Consensus 160 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~---------------- 222 (406)
T 3sf4_A 160 RDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FGD---------------- 222 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH-TTC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh-cCC----------------
Confidence 66666666554432 1000 1123444444555555555555555444322000 000
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC---CC----hhhHHHHHHHHHhcCCHHHHHHH
Q 048533 253 EALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGAT---PN----HVTYTTLIDGYCRANDLEEALRL 325 (591)
Q Consensus 253 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~----~~~~~~li~~~~~~g~~~~a~~~ 325 (591)
......++..+...+...|++++|...+++..... ++ ..++..+...|...|++++|...
T Consensus 223 -------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 289 (406)
T 3sf4_A 223 -------------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 289 (406)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 00001234444455555555555555554443210 01 23444555555555555555555
Q ss_pred HHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 326 REVMAAK----GVYP-GVVTYNSILRKLCKEGRIRDANRLLNEMNE 366 (591)
Q Consensus 326 ~~~~~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 366 (591)
+++.... +..+ ...++..+...+...|++++|...+++..+
T Consensus 290 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 290 HLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5554432 1000 133455555566666666666666665443
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=1.3e-13 Score=136.02 Aligned_cols=205 Identities=12% Similarity=-0.018 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
...+..++..+...|++++|+..|+++...++..... ...++..++..|...|++++|+..++++.
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRT--------------LSAIYSQLGNAYFYLGDYNKAMQYHKHDL 113 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHH--------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhH--------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445578889999999999999999998865321110 11467778889999999999999999887
Q ss_pred hC----C-CccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHccCC------------
Q 048533 158 VH----N-LMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLG-----VVANIHLYNVLIHACCKSSD------------ 215 (591)
Q Consensus 158 ~~----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~g~------------ 215 (591)
+. + ......++..+...+...|+++.|...++++.+.. ......++..+...+...|+
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 193 (411)
T 4a1s_A 114 TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGD 193 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCH
T ss_pred HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhh
Confidence 64 1 12245677888888888999999988888876531 11123456666677777777
Q ss_pred -----hhhHHHHHHHHhhC----C-CCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHH
Q 048533 216 -----VDKVEKLLCEMEFK----D-VRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGIS-PD----IVTYNSLIHGF 280 (591)
Q Consensus 216 -----~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~ 280 (591)
+++|.+.+++.... + .+....++..+...+...|++++|...+++..+.... ++ ..++..+...|
T Consensus 194 ~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 273 (411)
T 4a1s_A 194 DVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSH 273 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 66666666554331 0 0111224455555555555555555555554432000 01 11344444555
Q ss_pred HhcCCHHHHHHHHHHh
Q 048533 281 CREGRMREARRLFRDI 296 (591)
Q Consensus 281 ~~~g~~~~A~~~~~~~ 296 (591)
...|++++|...+++.
T Consensus 274 ~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 274 IFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HTTTCHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHH
Confidence 5555555555555444
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.54 E-value=6.6e-13 Score=114.68 Aligned_cols=167 Identities=14% Similarity=0.096 Sum_probs=114.7
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+..+|..++.++.+.|++++|+..|+++.+.+ |.+..++..++.+|.+.|++++|+..+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~~~~~la~~~~~~~~~~~a~~~~~~~ 65 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD------------------PNNVETLLKLGKTYMDIGLPNDAIESLKKF 65 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 56677777777777777777777777777654 344556666777777777777777777777
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcc
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLF 236 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 236 (591)
....+. +...+..+...+...++++.+...+.+..+..+. +...+..+...+.+.|++++|++.|++..+.+ +.+..
T Consensus 66 ~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~ 142 (184)
T 3vtx_A 66 VVLDTT-SAEAYYILGSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIR 142 (184)
T ss_dssp HHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HhcCch-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhh
Confidence 766554 5666666667777777777777777777665543 56666666777777777777777777766653 33556
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 237 TYNTLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 237 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
+|..+..++.+.|++++|++.|++..+.
T Consensus 143 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 143 AYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 6666777777777777777777766654
No 65
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=3.8e-13 Score=132.36 Aligned_cols=298 Identities=12% Similarity=-0.034 Sum_probs=161.7
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcC------CC-Ch
Q 048533 235 LFTYNTLIALYCKKGMHYEALAVQDRMEREGISPD----IVTYNSLIHGFCREGRMREARRLFRDIKGA------TP-NH 303 (591)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~ 303 (591)
...+......+...|++++|...|++..+.+.. + ..++..+...+...|++++|...+++.... .| ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 334455556666666666666666666654221 2 234555566666666666666666554321 11 12
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 048533 304 VTYTTLIDGYCRANDLEEALRLREVMAAKGVY-PGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINA 382 (591)
Q Consensus 304 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 382 (591)
.++..+...+...|++++|...+++..+.... ++. .....++..+...
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGNV 136 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHHH
Confidence 33444455555555555555555555443100 000 0012244445555
Q ss_pred HHHcCC--------------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 383 YCKIGD--------------------TASAMKVKNRMLEA----GLML-DQFTYKALIHGFCKAKEMDIAKELLFGMLDA 437 (591)
Q Consensus 383 ~~~~~~--------------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 437 (591)
+...|+ +++|...+++.... +..+ ...++..+...+...|++++|...+++..+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555555 55555555554321 1001 1234556666667777777777777666532
Q ss_pred CC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 438 GF-SPS----YCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLC-VD----VSVYRALIRRFCKKEKVDYAQRLFNLMQGN 507 (591)
Q Consensus 438 ~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 507 (591)
.. .++ ..++..+...|...|++++|...++++.+.... .+ ..++..+...|...|++++|...+++..+.
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 10 111 235666677777777777777777776643110 01 456677777777888888888877776642
Q ss_pred ----CCCcC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHhhhcchhH
Q 048533 508 ----GILGD-SVIYTSLAYAYWRAGEPKACSDILDDMYRR----RLMI-TLKIYRSFSASYAKDNEI 564 (591)
Q Consensus 508 ----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~ 564 (591)
+-.+. ..++..+..+|...|++++|...+++..+. +..+ ...++..+...|...|+.
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 11111 356677777888888888888888777653 1111 123455566666555543
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=9e-13 Score=113.82 Aligned_cols=172 Identities=13% Similarity=0.063 Sum_probs=138.2
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 128 GNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLI 207 (591)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 207 (591)
+++.+|..++..|.+.|++++|++.|+++++.++. +..++..+..++.+.|+++.|...+......... +...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 35567888899999999999999999999888766 7888888889999999999999999888877655 667777777
Q ss_pred HHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048533 208 HACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMR 287 (591)
Q Consensus 208 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 287 (591)
..+...++++.|...+.+..... +.+..++..+..++...|++++|++.|++..+... .+..++..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHH
Confidence 88888888888888888877653 44567788888888888888888888888877632 35677888888888888888
Q ss_pred HHHHHHHHhhcCCCCh
Q 048533 288 EARRLFRDIKGATPNH 303 (591)
Q Consensus 288 ~A~~~~~~~~~~~~~~ 303 (591)
+|.+.|++..+..|+.
T Consensus 159 ~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHhCCccC
Confidence 8888888877666543
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=5.7e-13 Score=133.29 Aligned_cols=194 Identities=11% Similarity=-0.084 Sum_probs=108.5
Q ss_pred ccchHHHHHHHHHhcCCh-HHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 129 NSHVLSWLVIFYANLKMT-QDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLI 207 (591)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 207 (591)
+..++..++..|...|++ ++|++.|+++++.++. +..+|..+..++...|++++|.+.|++..+.. |+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHH
Confidence 334455555555555555 5555555555555433 45555555555555555555555555555543 3345555555
Q ss_pred HHHHcc---------CChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhc--------CChhHHHHHHHHHHHCCCC--C
Q 048533 208 HACCKS---------SDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKK--------GMHYEALAVQDRMEREGIS--P 268 (591)
Q Consensus 208 ~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~a~~~~~~~~~~~~~--p 268 (591)
..+... |++++|...+++..... +.+...|..+..++... |++++|+..|++..+.... -
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 555555 56666666666655543 23455555555555555 6666666666666554210 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHH
Q 048533 269 DIVTYNSLIHGFCREGRMREARRLFRDIKGATPN-HVTYTTLIDGYCRANDLEEALRLR 326 (591)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~ 326 (591)
+...|..+..+|...|++++|...|++.....|+ ...+..+..++...|++++|.+.+
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556666666666666666666666666554443 445555566666666666666544
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.51 E-value=3.4e-13 Score=128.84 Aligned_cols=281 Identities=14% Similarity=0.008 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048533 79 QSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRV 158 (591)
Q Consensus 79 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 158 (591)
..+...+..+...|++++|+..|+++.+..+..... ...++..++..|...|++++|++.++++.+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 71 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKT--------------LSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHH--------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHH--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567888899999999999999988764322110 124567788889999999999999888765
Q ss_pred C----CCc-cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHccCC-------------
Q 048533 159 H----NLM-PHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV-AN----IHLYNVLIHACCKSSD------------- 215 (591)
Q Consensus 159 ~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~g~------------- 215 (591)
. +.. ....++..+...+...|+++.|...+++..+.... ++ ..++..+...+...|+
T Consensus 72 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T 3ro2_A 72 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEF 151 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----C
T ss_pred HhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhh
Confidence 3 111 12456777778888888888888888776653211 11 2355666666677777
Q ss_pred -------hhhHHHHHHHHhhC----C-CCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHH
Q 048533 216 -------VDKVEKLLCEMEFK----D-VRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGI-SPD----IVTYNSLIH 278 (591)
Q Consensus 216 -------~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~ 278 (591)
+++|...+++.... + .+....++..+...+...|++++|...+++..+... .++ ..++..+..
T Consensus 152 ~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 231 (338)
T 3ro2_A 152 PEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGN 231 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 66666666554321 0 011122344455555555555555555554432100 000 123444444
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 048533 279 GFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYP-GVVTYNSILRKLCKEGRIRDA 357 (591)
Q Consensus 279 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a 357 (591)
.+...|++++|...+++.....+ ..+..+ ...++..+...+...|++++|
T Consensus 232 ~~~~~g~~~~A~~~~~~al~~~~-----------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (338)
T 3ro2_A 232 AYIFLGEFETASEYYKKTLLLAR-----------------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKA 282 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHH-----------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHH-----------------------------hhcchhHHHHHHHHHHHHHHHhcCHHHH
Confidence 44444555555444444332100 000000 023344444555555555555
Q ss_pred HHHHHHHHhCC----C-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048533 358 NRLLNEMNEKK----I-APDNVTCNTLINAYCKIGDTASAMKVKNRMLEA 402 (591)
Q Consensus 358 ~~~~~~~~~~~----~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 402 (591)
...+++..+.. . .....++..+...+...|++++|...+++..+.
T Consensus 283 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 283 IDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 55555443320 0 001234555566666666666666666665543
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.50 E-value=3e-12 Score=124.93 Aligned_cols=312 Identities=7% Similarity=-0.004 Sum_probs=180.7
Q ss_pred CChHHHHHHHHhhhc--CCCChhHHHHHHHHHhhhCCCCCCCH--HHHHHHHH--HHHcCCCchHHH-----------HH
Q 048533 38 LTSTAIHKVLLNLYN--CCHIPSLSCAFFKWAESAVPNYKHSL--QSHWTMIH--ILTKNKHFKSAQ-----------NM 100 (591)
Q Consensus 38 ~~~~~~~~~l~~~~~--~~~~~~~A~~~f~~~~~~~p~~~~~~--~~~~~l~~--~~~~~g~~~~A~-----------~~ 100 (591)
.++..+...|..-+. +.++.++|..+++.+.+..+....+. ..|+.++. ...-.+.++.+. +.
T Consensus 7 ~~~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~ 86 (383)
T 3ulq_A 7 ISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDL 86 (383)
T ss_dssp -CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhH
Confidence 345555555543332 45899999999999987665543333 33344332 222223344444 55
Q ss_pred HHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhC----CCcc-CHHhHHHHHHHH
Q 048533 101 LEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVH----NLMP-HLHACTVLLNSL 175 (591)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~ 175 (591)
++.+..... + ....+. ...+...+..+...|++++|+..|+++.+. +..+ ...++..+...+
T Consensus 87 ~~~i~~~~~-~----~~~~l~--------~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~ 153 (383)
T 3ulq_A 87 LLEIDKKQA-R----LTGLLE--------YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESY 153 (383)
T ss_dssp HHHHHHHTH-H----HHHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-C----chhHHH--------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 555543210 0 011111 012334677888999999999999998774 2111 345788888888
Q ss_pred HhcCChhHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHccCChhhHHHHHHHHhhCCC-----CcCcccHHHHHHH
Q 048533 176 AKDRLTDMVWKVYKKMVQLGVVA------NIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDV-----RADLFTYNTLIAL 244 (591)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~ 244 (591)
...|+++.|...+++..+..... ...+++.+...|...|++++|...+++...... +....++..+..+
T Consensus 154 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 233 (383)
T 3ulq_A 154 YYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLC 233 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 89999999998888877532111 134667777788888888888888777654310 0012356677777
Q ss_pred HHhcCChhHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcC-----CCC-hhhHHHHHHHH
Q 048533 245 YCKKGMHYEALAVQDRMERE----GI-SPDIVTYNSLIHGFCREGRMREARRLFRDIKGA-----TPN-HVTYTTLIDGY 313 (591)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~----~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-~~~~~~li~~~ 313 (591)
+...|++++|...+++..+. +. +....++..+...+...|++++|...+++.... .|. ...+..+...+
T Consensus 234 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~ 313 (383)
T 3ulq_A 234 KNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLY 313 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777776651 22 223456677777777777777777777766431 111 12234455555
Q ss_pred HhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048533 314 CRAND---LEEALRLREVMAAKGVYPG-VVTYNSILRKLCKEGRIRDANRLLNEMN 365 (591)
Q Consensus 314 ~~~g~---~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 365 (591)
...|+ +++|+.+++.. +..|+ ...+..+...|...|++++|...+++..
T Consensus 314 ~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 314 LSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp TSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56666 44444444443 11111 2234445555555566666665555543
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.49 E-value=5.8e-12 Score=122.84 Aligned_cols=230 Identities=6% Similarity=-0.089 Sum_probs=139.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C----CCChHHHHH
Q 048533 310 IDGYCRANDLEEALRLREVMAAK----GVYP-GVVTYNSILRKLCKEGRIRDANRLLNEMNEKK--I----APDNVTCNT 378 (591)
Q Consensus 310 i~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~~ 378 (591)
...+...|++++|...+++..+. +-.+ ...++..+...+...|++++|...+++..+.. . +....++..
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 33444555555555555555442 1011 12345555555556666666666655544320 0 001235566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHH
Q 048533 379 LINAYCKIGDTASAMKVKNRMLEAGLM-LD----QFTYKALIHGFCKAKEMDIAKELLFGMLDA----GF-SPSYCSYSW 448 (591)
Q Consensus 379 li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ 448 (591)
+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++.++. +. +....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 666777777777777777666543110 11 235667777788888888888888877751 22 333566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCcC-HHHHHHHH
Q 048533 449 LVDGYCNKNNEEALLKLLDEFVSRG----LCVDVSVYRALIRRFCKKEK---VDYAQRLFNLMQGNGILGD-SVIYTSLA 520 (591)
Q Consensus 449 l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~-~~~~~~l~ 520 (591)
+...|...|++++|...++++.+.. -+.....+..+...+...|+ +++|..++++. +..|+ ...+..+.
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 346 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHH
Confidence 8888888888888888888776531 11112235667777778888 66666666655 23333 35677888
Q ss_pred HHHHHcCChhHHHHHHHHHHHC
Q 048533 521 YAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
..|...|++++|...++++.+.
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 8999999999999999888763
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.47 E-value=8.8e-11 Score=110.48 Aligned_cols=220 Identities=9% Similarity=0.004 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q 048533 320 EEALRLREVMAAKGVYPGVVTYNSILRKLC-------KEGRI-------RDANRLLNEMNEKKIAPDNVTCNTLINAYCK 385 (591)
Q Consensus 320 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 385 (591)
++|..+|+++.... +.++..|..+...+. +.|++ ++|..+|++.++.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45555555555432 224444544444443 23554 6667777666662112244566666666667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 048533 386 IGDTASAMKVKNRMLEAGLMLDQF-TYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYC-NKNNEEALL 463 (591)
Q Consensus 386 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~ 463 (591)
.|++++|..+|+++.+.... +.. .|..++..+.+.|++++|..+|++.++.. +++...|........ ..|+.++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777776664221 232 56666666666777777777777776643 223333333322211 257777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCc--CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 048533 464 KLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNG-ILG--DSVIYTSLAYAYWRAGEPKACSDILDDMY 540 (591)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 540 (591)
.+|+.+++..+. +...|..++..+...|++++|+.+|++..... ++| ....|..++..+.+.|+.++|..+++++.
T Consensus 190 ~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777765333 56677777777777777777777777777642 344 24567777777777777777777777777
Q ss_pred HCC
Q 048533 541 RRR 543 (591)
Q Consensus 541 ~~~ 543 (591)
+..
T Consensus 269 ~~~ 271 (308)
T 2ond_A 269 TAF 271 (308)
T ss_dssp HHT
T ss_pred HHc
Confidence 653
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.45 E-value=2.7e-12 Score=133.49 Aligned_cols=170 Identities=13% Similarity=0.041 Sum_probs=145.7
Q ss_pred CCCChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHH
Q 048533 36 SSLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSV 115 (591)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 115 (591)
+.|+.......|+.++...|++++|+..|+++++..|+ ...++..++.+|.+.|++++|+..|+++.+.+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~---~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~------- 73 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE---FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS------- 73 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Confidence 34555566677788888889999999999999998887 78899999999999999999999999988865
Q ss_pred HHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048533 116 LNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLG 195 (591)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 195 (591)
|.+..++..++.+|.+.|++++|++.|+++++.++. +..+|+.+..++.+.|++++|++.|++..+..
T Consensus 74 -----------P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 141 (723)
T 4gyw_A 74 -----------PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK 141 (723)
T ss_dssp -----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 455677888999999999999999999999988765 78899999999999999999999999999886
Q ss_pred CCCCHHHHHHHHHHHHccCChhhHHHHHHHHhh
Q 048533 196 VVANIHLYNVLIHACCKSSDVDKVEKLLCEMEF 228 (591)
Q Consensus 196 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 228 (591)
+. +...+..+..++...|++++|.+.+++..+
T Consensus 142 P~-~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 142 PD-FPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp SC-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred CC-ChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 65 678888899999999999999888887654
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=8.5e-13 Score=124.65 Aligned_cols=179 Identities=12% Similarity=0.057 Sum_probs=130.3
Q ss_pred CCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHH
Q 048533 75 KHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFD 154 (591)
Q Consensus 75 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 154 (591)
+....++..++..+...|++++|..+++++..... ... ....+....++..++..|...|++++|+..++
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~--------~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 93 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLE--------KTS--GHDHPDVATMLNILALVYRDQNKYKDAANLLN 93 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------HHH--CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------HHc--CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34677888999999999999999999999876310 000 00112344577888999999999999999999
Q ss_pred HHhhC------C-CccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHccCChhhHH
Q 048533 155 QMRVH------N-LMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQL------GV-VANIHLYNVLIHACCKSSDVDKVE 220 (591)
Q Consensus 155 ~~~~~------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~g~~~~a~ 220 (591)
++.+. + ......++..+...+...|++++|...++++.+. +. +.....+..+...+...|++++|.
T Consensus 94 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 173 (311)
T 3nf1_A 94 DALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE 173 (311)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 98764 1 1224567888888999999999999999888764 11 123455777778888888888888
Q ss_pred HHHHHHhhC------C-CCcCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048533 221 KLLCEMEFK------D-VRADLFTYNTLIALYCKKGMHYEALAVQDRMER 263 (591)
Q Consensus 221 ~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 263 (591)
+++++.... + .+....++..+..++...|++++|...++++.+
T Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888887653 1 122344667777778888888888888877765
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.42 E-value=6.1e-12 Score=125.83 Aligned_cols=210 Identities=11% Similarity=-0.044 Sum_probs=139.4
Q ss_pred hHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHH
Q 048533 146 TQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLT-DMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLC 224 (591)
Q Consensus 146 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 224 (591)
+++++..++....... .+...+..+..++...|++ ++|++.|++..+..+. +...|..+..+|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4566666666655443 2667777777777777777 7777777777776544 56677777777777777777777777
Q ss_pred HHhhCCCCcCcccHHHHHHHHHhc---------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 048533 225 EMEFKDVRADLFTYNTLIALYCKK---------GMHYEALAVQDRMEREGISPDIVTYNSLIHGFCRE--------GRMR 287 (591)
Q Consensus 225 ~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~ 287 (591)
+..... |+..++..+..++... |++++|++.|++..+... .+...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 777653 4556677777777777 777777777777766532 2456666677777666 6677
Q ss_pred HHHHHHHHhhcCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048533 288 EARRLFRDIKGATP----NHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLL 361 (591)
Q Consensus 288 ~A~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 361 (591)
+|...|++.....| +...|..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|++++|...+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777665444 45666666667777777777777776666543 224445566666666666666665544
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.41 E-value=6.3e-12 Score=130.74 Aligned_cols=166 Identities=10% Similarity=-0.041 Sum_probs=150.8
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
...+++.++.++.+.|++++|++.|+++++.+ |.+..++..++.+|.+.|++++|++.|+++
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~------------------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~A 69 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF------------------PEFAAAHSNLASVLQQQGKLQEALMHYKEA 69 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 68899999999999999999999999999865 455678889999999999999999999999
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcc
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLF 236 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 236 (591)
++.++. +..+|..+..++.+.|++++|++.|++..+..+. +...|..+..++.+.|++++|++.|++..+.. +-+..
T Consensus 70 l~l~P~-~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~ 146 (723)
T 4gyw_A 70 IRISPT-FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPD 146 (723)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHH
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 998766 7889999999999999999999999999998765 78899999999999999999999999998874 44678
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048533 237 TYNTLIALYCKKGMHYEALAVQDRMER 263 (591)
Q Consensus 237 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 263 (591)
.+..+..++...|++++|.+.+++..+
T Consensus 147 a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 147 AYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 899999999999999999999988765
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.40 E-value=5.5e-11 Score=115.63 Aligned_cols=312 Identities=10% Similarity=0.019 Sum_probs=184.4
Q ss_pred CCChHHHHHHHHhhh--cCCCChhHHHHHHHHHhhhCCCCCCCH--HHHHHHHHH--HHcCCCchHHH---------HHH
Q 048533 37 SLTSTAIHKVLLNLY--NCCHIPSLSCAFFKWAESAVPNYKHSL--QSHWTMIHI--LTKNKHFKSAQ---------NML 101 (591)
Q Consensus 37 ~~~~~~~~~~l~~~~--~~~~~~~~A~~~f~~~~~~~p~~~~~~--~~~~~l~~~--~~~~g~~~~A~---------~~~ 101 (591)
..++..+...|-.-+ ...++.++|..+++.+....+....+. ..|..+... ..-.+.+..+. ..+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 345677777777666 566899999999998876554433333 333443321 11123333333 555
Q ss_pred HHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc-c----CHHhHHHHHHHHH
Q 048533 102 EKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLM-P----HLHACTVLLNSLA 176 (591)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~----~~~~~~~ll~~~~ 176 (591)
+.+...... ...... ...+...+..+...|++++|+..|+++.+.... + ...++..+..++.
T Consensus 86 ~~i~~~~~~-----~~~~l~--------~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~ 152 (378)
T 3q15_A 86 ETIETPQKK-----LTGLLK--------YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYY 152 (378)
T ss_dssp HHHHGGGHH-----HHHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCC-----CccHHH--------HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH
Confidence 554332100 011111 113455677788999999999999998765211 1 2457788888899
Q ss_pred hcCChhHHHHHHHHHHHCCC-----CC-CHHHHHHHHHHHHccCChhhHHHHHHHHhhC----CCC-cCcccHHHHHHHH
Q 048533 177 KDRLTDMVWKVYKKMVQLGV-----VA-NIHLYNVLIHACCKSSDVDKVEKLLCEMEFK----DVR-ADLFTYNTLIALY 245 (591)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~ 245 (591)
..|+++.|...+++..+... .+ ...+++.+...|...|++++|.+.+++.... +.+ ....++..+..++
T Consensus 153 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 232 (378)
T 3q15_A 153 HMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSY 232 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999999988888765311 11 2346677778888888888888888776542 111 1134566677777
Q ss_pred HhcCChhHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcC-----CCC-hhhHHHHHHHHH
Q 048533 246 CKKGMHYEALAVQDRMER-----EGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGA-----TPN-HVTYTTLIDGYC 314 (591)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-~~~~~~li~~~~ 314 (591)
...|++++|...+++..+ .... ...++..+...+.+.|++++|...+++.... .+. ...+..+...+.
T Consensus 233 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~ 311 (378)
T 3q15_A 233 DRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYK 311 (378)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHS
T ss_pred HHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 777888887777777665 3222 2556667777777777777777777776541 111 223444445555
Q ss_pred hcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048533 315 RAND---LEEALRLREVMAAKGVYPG-VVTYNSILRKLCKEGRIRDANRLLNEMN 365 (591)
Q Consensus 315 ~~g~---~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 365 (591)
..++ +++|+..++. .+..|+ ...+..+...|...|++++|...|+...
T Consensus 312 ~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 312 ETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp SSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5566 5555555544 211111 2234445555556666666666665544
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.37 E-value=9.1e-11 Score=113.91 Aligned_cols=241 Identities=9% Similarity=-0.015 Sum_probs=141.1
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHh
Q 048533 44 HKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHS--LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVK 121 (591)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 121 (591)
....+.++...|+++.|+..++.+....|...+. ..++..++..+...|++++|...+++............
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------ 90 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH------ 90 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH------
Confidence 3444555566799999999999998876642111 12566788899999999999999999876422111110
Q ss_pred hcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC----Cc--c-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 122 IHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN----LM--P-HLHACTVLLNSLAKDRLTDMVWKVYKKMVQL 194 (591)
Q Consensus 122 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 194 (591)
....++..+...+...|++++|+..+++..+.. .. | ...++..+...+...|++++|...+++..+.
T Consensus 91 ------~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 164 (373)
T 1hz4_A 91 ------YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV 164 (373)
T ss_dssp ------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 011345667888999999999999999877632 11 2 2345566777777888888888888877654
Q ss_pred CCCC----CHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCc-ccHH-----HHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 195 GVVA----NIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADL-FTYN-----TLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 195 ~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
.... ...++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++....
T Consensus 165 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 165 LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp TTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred hhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 3221 1234555566666667777776666665432111111 1111 1122244555555555555554432
Q ss_pred CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048533 265 GISP---DIVTYNSLIHGFCREGRMREARRLFRDI 296 (591)
Q Consensus 265 ~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 296 (591)
...+ ....+..+...+...|++++|...++..
T Consensus 245 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 245 EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2111 0122334444455555555555555444
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.36 E-value=2.5e-11 Score=114.45 Aligned_cols=239 Identities=15% Similarity=0.073 Sum_probs=167.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-
Q 048533 303 HVTYTTLIDGYCRANDLEEALRLREVMAAK-------GVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEK------K- 368 (591)
Q Consensus 303 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~- 368 (591)
..++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...+++..+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 567888889999999999999999998873 22334566788888899999999999999988764 1
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 048533 369 IAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEA------GLML-DQFTYKALIHGFCKAKEMDIAKELLFGMLDA---- 437 (591)
Q Consensus 369 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 437 (591)
.+.....+..+...+...|++++|...++++.+. +..| ....+..+...+...|++++|...++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 1223467888889999999999999999988764 2112 3456778888899999999999999998763
Q ss_pred --CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCC-------HHHHHHHHHHHHhcCCHHHHHHH
Q 048533 438 --GFSP-SYCSYSWLVDGYCNKNNEEALLKLLDEFVSRG-------LCVD-------VSVYRALIRRFCKKEKVDYAQRL 500 (591)
Q Consensus 438 --~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~-------~~~~~~l~~~~~~~g~~~~a~~~ 500 (591)
+..| ...++..+...|...|++++|...++++.+.. ..+. ...+..+...+...+.+.++...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 1122 24567788889999999999999999988631 1111 12222333334455666666667
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 501 FNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 501 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
++..... -+.+..++..+..+|.+.|++++|.++++++.+.
T Consensus 267 ~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 267 YKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7766653 2334578889999999999999999999988763
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.36 E-value=4.8e-10 Score=108.81 Aligned_cols=274 Identities=12% Similarity=-0.010 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048533 79 QSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRV 158 (591)
Q Consensus 79 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 158 (591)
.+....+..+...|++++|...+++.....+..+... ...++..+...|...|++++|...+++..+
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 81 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYS-------------RIVATSVLGEVLHCKGELTRSLALMQQTEQ 81 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHH-------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhH-------------HHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3445667788899999999999999887543222110 112456677889999999999999998876
Q ss_pred CCCc-cC----HHhHHHHHHHHHhcCChhHHHHHHHHHHHCC----CC--C-CHHHHHHHHHHHHccCChhhHHHHHHHH
Q 048533 159 HNLM-PH----LHACTVLLNSLAKDRLTDMVWKVYKKMVQLG----VV--A-NIHLYNVLIHACCKSSDVDKVEKLLCEM 226 (591)
Q Consensus 159 ~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 226 (591)
.... ++ ..++..+...+...|+++.|...+++..+.. .. | ....+..+...+...|++++|...+++.
T Consensus 82 ~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (373)
T 1hz4_A 82 MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG 161 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4211 11 2345677788888999999999988876532 11 2 2345566777888889999999888887
Q ss_pred hhCCCC----cCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHh
Q 048533 227 EFKDVR----ADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPD--IVTYN----SLIHGFCREGRMREARRLFRDI 296 (591)
Q Consensus 227 ~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~----~l~~~~~~~g~~~~A~~~~~~~ 296 (591)
...... ....++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+...
T Consensus 162 l~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 241 (373)
T 1hz4_A 162 IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 241 (373)
T ss_dssp HHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 653211 1123566777778888888888888887764311111 11111 2234466788888888888877
Q ss_pred hcCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048533 297 KGATPN-----HVTYTTLIDGYCRANDLEEALRLREVMAAK----GVYPGV-VTYNSILRKLCKEGRIRDANRLLNEMN 365 (591)
Q Consensus 297 ~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~ 365 (591)
....+. ...+..+...+...|++++|...++..... |..++. ..+..+..++...|+.++|...+++..
T Consensus 242 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 242 AKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp CCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 653332 113445566677777777777776665432 111111 133334444555555555555555544
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.35 E-value=4.2e-10 Score=109.35 Aligned_cols=127 Identities=17% Similarity=0.141 Sum_probs=60.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHH
Q 048533 376 CNTLINAYCKIGDTASAMKVKNRMLE-----AGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDA----GFSPSYCSY 446 (591)
Q Consensus 376 ~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~ 446 (591)
+..+..+|...|++++|...+++... .. +....++..+...+.+.|++++|...+++..+. +.+.....+
T Consensus 225 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 303 (378)
T 3q15_A 225 LLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF 303 (378)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444444455555555555544443 21 112444555555555555555555555555532 111112233
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 447 SWLVDGYCNKNN---EEALLKLLDEFVSRGLCV-DVSVYRALIRRFCKKEKVDYAQRLFNLMQG 506 (591)
Q Consensus 447 ~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 506 (591)
..+...+...++ ..+|+..+++ .+..| ....+..+...|...|++++|...|++..+
T Consensus 304 ~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 304 LFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444444445555 4444444443 11111 223445566666666666666666666554
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=4.8e-11 Score=102.78 Aligned_cols=160 Identities=9% Similarity=-0.031 Sum_probs=96.1
Q ss_pred HHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCC
Q 048533 46 VLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDD 125 (591)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (591)
.++..+...|++++|+..|+.+.+..|. +..++..++.++...|++++|...++++....
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------- 72 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDADAF---DVDVALHLGIAYVKTGAVDRGTELLERSLADA----------------- 72 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTTSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcc---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------
Confidence 3344444456677777777666655444 56666666666666777777776666666543
Q ss_pred CCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 126 PDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNV 205 (591)
Q Consensus 126 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 205 (591)
+.+..++..++..|...|++++|++.++++.+..+. +...+..+...+...|++++|...++.+.+.... +...+..
T Consensus 73 -~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 149 (186)
T 3as5_A 73 -PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRA 149 (186)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHH
Confidence 223345555666666666666666666666665433 5555666666666666666666666666655432 4555555
Q ss_pred HHHHHHccCChhhHHHHHHHHhh
Q 048533 206 LIHACCKSSDVDKVEKLLCEMEF 228 (591)
Q Consensus 206 ll~~~~~~g~~~~a~~~~~~~~~ 228 (591)
+...+...|++++|...+++...
T Consensus 150 la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 150 IAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666665544
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=1.7e-11 Score=105.60 Aligned_cols=165 Identities=13% Similarity=0.019 Sum_probs=127.3
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 130 SHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHA 209 (591)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 209 (591)
...+..++..+...|++++|+..++++.+..+. +..++..+...+...|+++.|...++.+.+..+. +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 345666778888899999999999888877654 6778888888888889999999888888876543 66777778888
Q ss_pred HHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048533 210 CCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREA 289 (591)
Q Consensus 210 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 289 (591)
+...|++++|.+.+++..... +.+...+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888877653 3456677777778888888888888888877653 23566777777777788888888
Q ss_pred HHHHHHhhc
Q 048533 290 RRLFRDIKG 298 (591)
Q Consensus 290 ~~~~~~~~~ 298 (591)
...++.+..
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887777654
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.31 E-value=3e-11 Score=112.11 Aligned_cols=165 Identities=11% Similarity=0.041 Sum_probs=120.4
Q ss_pred CCChhHHHHHHHHHhhhC-----CCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCC
Q 048533 54 CHIPSLSCAFFKWAESAV-----PNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDG 128 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~-----p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (591)
.|++++|+..|+.+++.. ++.+....++..++.++...|++++|+..++++.... ... ...+.+.
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~~~--~~~~~~~ 83 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIR--------EKT--LGKDHPA 83 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------HHH--TCTTCHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH--------HHH--cCCcchH
Confidence 377788888888777631 2223356778899999999999999999999987631 000 0012233
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHhhC------C-CccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC------C
Q 048533 129 NSHVLSWLVIFYANLKMTQDGLQVFDQMRVH------N-LMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQL------G 195 (591)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 195 (591)
...++..++..|...|++++|++.|+++.+. . ......++..+...+...|++++|...++++.+. +
T Consensus 84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 163 (283)
T 3edt_B 84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP 163 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4567888999999999999999999998765 1 1224667888888899999999999999888765 1
Q ss_pred CCC-CHHHHHHHHHHHHccCChhhHHHHHHHHhh
Q 048533 196 VVA-NIHLYNVLIHACCKSSDVDKVEKLLCEMEF 228 (591)
Q Consensus 196 ~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 228 (591)
..| ...++..+...+...|++++|...+++...
T Consensus 164 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 164 DDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112 345677778888888888888888887765
No 84
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.30 E-value=1.3e-11 Score=102.19 Aligned_cols=146 Identities=10% Similarity=0.042 Sum_probs=117.6
Q ss_pred HHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCC
Q 048533 47 LLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDP 126 (591)
Q Consensus 47 l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (591)
|+.++...|++++|+..|+.+....|. ....++.++.+|.+.|++++|+..|+++.+.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~---~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~------------------ 61 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ---KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ------------------ 61 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH---HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------
Confidence 466677778999999999998775554 66778889999999999999999999998865
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHH-HHHHHHCCCCCCHHHHHH
Q 048533 127 DGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKV-YKKMVQLGVVANIHLYNV 205 (591)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~ 205 (591)
|.++.++..++.+|.+.|++++|+..|+++++.++. +..++..+...+.+.|++++|.+. +++..+..+. +..+|..
T Consensus 62 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l 139 (150)
T 4ga2_A 62 ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKL 139 (150)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHH
Confidence 456678888999999999999999999999998765 788899999999999998776655 5888887654 6777877
Q ss_pred HHHHHHccCC
Q 048533 206 LIHACCKSSD 215 (591)
Q Consensus 206 ll~~~~~~g~ 215 (591)
....+...|+
T Consensus 140 ~~~ll~~~G~ 149 (150)
T 4ga2_A 140 KEQLLDCEGE 149 (150)
T ss_dssp HHHHHHTCCC
T ss_pred HHHHHHHhCc
Confidence 7777776664
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.30 E-value=7.6e-10 Score=99.02 Aligned_cols=196 Identities=11% Similarity=-0.066 Sum_probs=140.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 336 PGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALI 415 (591)
Q Consensus 336 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 415 (591)
.|+..+......+...|++++|...|+..++...+++...+..+..++...|++++|...+++..+... .+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHH
Confidence 356777778888888888999998888888765436777777788888888888888888888887642 2567788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 048533 416 HGFCKAKEMDIAKELLFGMLDAGFSPSY-------CSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVD---VSVYRALI 485 (591)
Q Consensus 416 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 485 (591)
..+...|++++|...+++.++.. +.+. ..|..+...+...|++++|+..++++++.. |+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHH
Confidence 88888888888888888888754 2334 456777777888888888888888888753 33 45667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 486 RRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 486 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
.+|...| ...++++...+ ..+...+.... ....+.+++|...+++..+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 7765443 34455555432 22334443332 334566889999999998864
No 86
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.29 E-value=2e-09 Score=99.28 Aligned_cols=235 Identities=11% Similarity=0.077 Sum_probs=178.8
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCC--CchHHHHHHHHHHHcCCCCchHHHHHHH
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNK--HFKSAQNMLEKIALRDFLSTPSVLNALV 120 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 120 (591)
+...+..........++|+..++.++..+|+ ...+++.-..++...| .+++++..++.++..+|..
T Consensus 35 ~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~---~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~--------- 102 (306)
T 3dra_A 35 IMGLLLALMKAEEYSERALHITELGINELAS---HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKN--------- 102 (306)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC---------
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCcH---HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCccc---------
Confidence 4555555556666778999999999999998 7888888899999999 9999999999999877543
Q ss_pred hhcCCCCCccchHHHHHHHH----Hhc---CChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChh--HHHHHHHHH
Q 048533 121 KIHDDPDGNSHVLSWLVIFY----ANL---KMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTD--MVWKVYKKM 191 (591)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~~~----~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~ 191 (591)
..+++....++ ... +++++++++++++.+.+++ +..+|+.-.-.+.+.|.++ .+++.++++
T Consensus 103 ---------y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~ 172 (306)
T 3dra_A 103 ---------YQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKV 172 (306)
T ss_dssp ---------CHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHH
Confidence 33444433333 444 7899999999999999887 9999999988888899888 999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCC------hhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhH-HHHHHHHHHHC
Q 048533 192 VQLGVVANIHLYNVLIHACCKSSD------VDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYE-ALAVQDRMERE 264 (591)
Q Consensus 192 ~~~~~~~~~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~ 264 (591)
.+.++. |...|+.....+.+.|. ++++++.+++++..+ +-|..+|+.+...+.+.|+..+ +..+..++.+.
T Consensus 173 i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~ 250 (306)
T 3dra_A 173 IDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDL 250 (306)
T ss_dssp HHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG
T ss_pred HHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 998876 88888877777777776 778888888877764 4577778887777777776444 44555555443
Q ss_pred C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc-CCC
Q 048533 265 G--ISPDIVTYNSLIHGFCREGRMREARRLFRDIKG-ATP 301 (591)
Q Consensus 265 ~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~ 301 (591)
+ -..++..+..+...|.+.|+.++|.++++.+.. ..|
T Consensus 251 ~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dp 290 (306)
T 3dra_A 251 EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNP 290 (306)
T ss_dssp GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccCh
Confidence 2 123566777777777777777777777777764 344
No 87
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.29 E-value=2.4e-10 Score=102.26 Aligned_cols=195 Identities=9% Similarity=-0.081 Sum_probs=153.4
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 128 GNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLI 207 (591)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 207 (591)
.++..+...+..|...|++++|+..|+++++.++.++...+..+..++...|++++|+..|++..+..+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3457788889999999999999999999999877568888888999999999999999999999998665 677889999
Q ss_pred HHHHccCChhhHHHHHHHHhhCCCCcCc-------ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 048533 208 HACCKSSDVDKVEKLLCEMEFKDVRADL-------FTYNTLIALYCKKGMHYEALAVQDRMEREGISPD---IVTYNSLI 277 (591)
Q Consensus 208 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~ 277 (591)
.++...|++++|...+++..... +.+. .+|..+...+...|++++|+..|++..+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999998764 2344 45788888899999999999999999876 454 45777777
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048533 278 HGFCREGRMREARRLFRDIKGAT-PNHVTYTTLIDGYCRANDLEEALRLREVMAAKG 333 (591)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 333 (591)
..|...| ...++.+.... .+...+.... ....+.+++|...+++..+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-----HHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 7776554 34444544422 2333333332 334566899999999998863
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.26 E-value=1.3e-10 Score=106.57 Aligned_cols=192 Identities=7% Similarity=-0.080 Sum_probs=121.8
Q ss_pred ChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHH
Q 048533 39 TSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNA 118 (591)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 118 (591)
++....-.++..+...|++++|+..|+.+++..|..+....++..++.++.+.|++++|+..|+++....+..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~------- 85 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID------- 85 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC-------
Confidence 3333344445556667999999999999999888744448889999999999999999999999999875432
Q ss_pred HHhhcCCCCCccchHHHHHHHHHh--------cCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 048533 119 LVKIHDDPDGNSHVLSWLVIFYAN--------LKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKK 190 (591)
Q Consensus 119 ~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 190 (591)
+....++..++.+|.. .|++++|+..|+++++..+. +......+... ..
T Consensus 86 --------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~--------------~~ 142 (261)
T 3qky_A 86 --------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKI--------------RE 142 (261)
T ss_dssp --------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHH--------------HH
T ss_pred --------chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHH--------------HH
Confidence 2334567788889998 99999999999999987654 32222111000 00
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCc--CcccHHHHHHHHHhc----------CChhHHHHHH
Q 048533 191 MVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRA--DLFTYNTLIALYCKK----------GMHYEALAVQ 258 (591)
Q Consensus 191 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~ 258 (591)
+... ....+..+...+.+.|++++|...|+++....... ....+..+..++... |++++|...|
T Consensus 143 ~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~ 218 (261)
T 3qky_A 143 LRAK----LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELY 218 (261)
T ss_dssp HHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHH
Confidence 0000 01113334555555666666666666555432110 122444455555544 5556666666
Q ss_pred HHHHHC
Q 048533 259 DRMERE 264 (591)
Q Consensus 259 ~~~~~~ 264 (591)
+++.+.
T Consensus 219 ~~~~~~ 224 (261)
T 3qky_A 219 ERLLQI 224 (261)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.21 E-value=4.6e-10 Score=104.60 Aligned_cols=233 Identities=12% Similarity=0.006 Sum_probs=143.3
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcC--C-CchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHH
Q 048533 58 SLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKN--K-HFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLS 134 (591)
Q Consensus 58 ~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~--g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (591)
.+|.+++..+.+..+. +. .++. +.+. + ++++|...|+++.
T Consensus 2 ~~a~~~~~~a~k~~~~---~~-~~~~----~~~~~~~~~~~~A~~~~~~a~----------------------------- 44 (292)
T 1qqe_A 2 SDPVELLKRAEKKGVP---SS-GFMK----LFSGSDSYKFEEAADLCVQAA----------------------------- 44 (292)
T ss_dssp CCHHHHHHHHHHHSSC---CC-THHH----HHSCCSHHHHHHHHHHHHHHH-----------------------------
T ss_pred CcHHHHHHHHHHHhCc---CC-Ccch----hcCCCCCccHHHHHHHHHHHH-----------------------------
Confidence 3577888888877653 21 1222 2233 2 5888888877763
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhC----CCcc-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-C----HHHHH
Q 048533 135 WLVIFYANLKMTQDGLQVFDQMRVH----NLMP-HLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVA-N----IHLYN 204 (591)
Q Consensus 135 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~ 204 (591)
..|...|++++|+..|++..+. +..+ ...+|+.+..+|...|++++|+..|++..+..... + ..+++
T Consensus 45 ---~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~ 121 (292)
T 1qqe_A 45 ---TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (292)
T ss_dssp ---HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2477889999999999988764 2211 24678888899999999999999888877542111 1 24566
Q ss_pred HHHHHHHcc-CChhhHHHHHHHHhhCCCCc-C----cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------HH
Q 048533 205 VLIHACCKS-SDVDKVEKLLCEMEFKDVRA-D----LFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDI------VT 272 (591)
Q Consensus 205 ~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~------~~ 272 (591)
.+...|... |++++|...|++........ + ..++..+...+...|++++|+..|++..+....... ..
T Consensus 122 ~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 677777775 78887777777765431100 0 235666777777777777777777777665322211 14
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCChh------hHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 048533 273 YNSLIHGFCREGRMREARRLFRDIKGATPNHV------TYTTLIDGYC--RANDLEEALRLREVMA 330 (591)
Q Consensus 273 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~li~~~~--~~g~~~~a~~~~~~~~ 330 (591)
+..+..++...|++++|...|++.....|+.. .+..++..+. ..+++++|+..|+.+.
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 55666667777777777777777766555422 1223333332 3345666666665543
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=1.8e-10 Score=106.79 Aligned_cols=227 Identities=16% Similarity=0.070 Sum_probs=150.7
Q ss_pred hcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCChHHHHHHH
Q 048533 315 RANDLEEALRLREVMAA-------KGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEK------KI-APDNVTCNTLI 380 (591)
Q Consensus 315 ~~g~~~~a~~~~~~~~~-------~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li 380 (591)
..|++++|...+++..+ ...+....++..+...+...|++++|...+++..+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45666666666655544 222234567788888899999999999999988754 11 22346788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHH
Q 048533 381 NAYCKIGDTASAMKVKNRMLEA------GL-MLDQFTYKALIHGFCKAKEMDIAKELLFGMLDA------GFSP-SYCSY 446 (591)
Q Consensus 381 ~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~ 446 (591)
..+...|++++|...++++... .. +.....+..+...+...|++++|...++++.+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8999999999999999988764 11 223567788888899999999999999988764 1122 24567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCcC
Q 048533 447 SWLVDGYCNKNNEEALLKLLDEFVSR-------GLCV-DVSVYRALIRRFCKKEKVD------YAQRLFNLMQGNGILGD 512 (591)
Q Consensus 447 ~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~~~~p~ 512 (591)
..+...|...|++++|...++++.+. ...+ ....+..+...+...+... .+...++.... ..+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHH
Confidence 78888899999999999999988763 1111 2233434443333333322 22222222111 11223
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 513 SVIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
..++..+..+|...|++++|..+++++.+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467888999999999999999999988763
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.20 E-value=1.1e-09 Score=102.02 Aligned_cols=205 Identities=9% Similarity=-0.032 Sum_probs=151.0
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCcc-
Q 048533 85 IHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMP- 163 (591)
Q Consensus 85 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~- 163 (591)
+.++...|++++|...|+++....... .+++....++..++.+|.+.|++++|+..|++.++.....
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g 111 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKA------------GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG 111 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHh------------CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC
Confidence 557888999999999999987632110 0111224578889999999999999999999987653211
Q ss_pred ----CHHhHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCc
Q 048533 164 ----HLHACTVLLNSLAKD-RLTDMVWKVYKKMVQLGVVA-N----IHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRA 233 (591)
Q Consensus 164 ----~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 233 (591)
-..+++.+...|... |++++|+..|++..+..... + ..++..+...+.+.|++++|...|++........
T Consensus 112 ~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 112 QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 145788999999996 99999999999988753221 1 3568888999999999999999999998864322
Q ss_pred Ccc------cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHhhcC
Q 048533 234 DLF------TYNTLIALYCKKGMHYEALAVQDRMEREGISPDI------VTYNSLIHGFC--REGRMREARRLFRDIKGA 299 (591)
Q Consensus 234 ~~~------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 299 (591)
... .|..+..++...|++++|...|++..+. .|+. ..+..++..+. ..+++++|+..|+.+...
T Consensus 192 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 221 4677888899999999999999998764 2321 13444566664 456799999999888765
Q ss_pred CCCh
Q 048533 300 TPNH 303 (591)
Q Consensus 300 ~~~~ 303 (591)
.|+.
T Consensus 270 ~~~~ 273 (292)
T 1qqe_A 270 DKWK 273 (292)
T ss_dssp CHHH
T ss_pred HHHH
Confidence 5543
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.20 E-value=5e-10 Score=98.42 Aligned_cols=181 Identities=8% Similarity=-0.001 Sum_probs=93.1
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+...+...+..+...|++++|+..|+++...+|......+.. .........+.+...++.+|.+.|++++|+..|++.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~--~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWT--NVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHH--HSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHh--hhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 456677788889999999999999999988653221111100 000000001111122566666666666666666666
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC--hhhHHHHHHHHhhCCCCcC
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSD--VDKVEKLLCEMEFKDVRAD 234 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~ 234 (591)
++.++. +..++..+..++...|++++|+..|+++.+..+. +..++..+...+...|+ ...+...++..... .|.
T Consensus 81 l~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 156 (208)
T 3urz_A 81 LQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP--TKM 156 (208)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC--CHH
T ss_pred HHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC--Cch
Confidence 665544 5556666666666666666666666666665443 45555555555443332 22233333333211 111
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048533 235 LFTYNTLIALYCKKGMHYEALAVQDRMER 263 (591)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 263 (591)
...+.....++...|++++|...|++..+
T Consensus 157 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 157 QYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 12222333334444555555555555444
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.20 E-value=1.6e-10 Score=120.89 Aligned_cols=185 Identities=10% Similarity=-0.040 Sum_probs=122.7
Q ss_pred HcCCCchHHHHHHHHHH--------HcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 89 TKNKHFKSAQNMLEKIA--------LRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 89 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
...|++++|++.++++. +.+ +.+..++..++..|.+.|++++|+..|+++.+.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~------------------p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 463 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF------------------SESVELPLMEVRALLDLGDVAKATRKLDDLAERV 463 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC------------------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc------------------ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Confidence 66777777777777776 322 3445566667777777777777777777777765
Q ss_pred CccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHH
Q 048533 161 LMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNT 240 (591)
Q Consensus 161 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (591)
+. +..+|..+..++...|++++|++.|++..+..+. +...+..+..++.+.|++++ .+.|++..+.+ +.+...|..
T Consensus 464 p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~ 539 (681)
T 2pzi_A 464 GW-RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFG 539 (681)
T ss_dssp CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHH
T ss_pred cc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHH
Confidence 54 6667777777777777777777777777776554 56667777777777777777 77777776654 335567777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC--------HHHHHHHHHHhh
Q 048533 241 LIALYCKKGMHYEALAVQDRMEREGISPD-IVTYNSLIHGFCREGR--------MREARRLFRDIK 297 (591)
Q Consensus 241 li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~ 297 (591)
+..++.+.|++++|++.|++..+. .|+ ...+..+..++...++ +++|.+.+..+.
T Consensus 540 lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 540 LARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 777777777777777777777654 343 4456666666544333 445555554443
No 94
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.19 E-value=3e-07 Score=91.76 Aligned_cols=353 Identities=9% Similarity=0.042 Sum_probs=215.3
Q ss_pred CChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCC-hhHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHc----cCCh
Q 048533 144 KMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRL-TDMVWKVYKKMVQL-GVV-ANIHLYNVLIHACCK----SSDV 216 (591)
Q Consensus 144 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-~~~-~~~~~~~~ll~~~~~----~g~~ 216 (591)
|+++.+..+|++.+.. .|+...|...+....+.++ .+....+|+..+.. |.. .+...|...+..+.. .|+.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7899999999999985 4699999999988887764 45677888887753 433 366788888876542 4678
Q ss_pred hhHHHHHHHHhhCCCCcCcccHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048533 217 DKVEKLLCEMEFKDVRADLFTYNTLIALYCK---KGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLF 293 (591)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 293 (591)
+.+.++|++.+.. ++. .+..+-..|.. ..+...+..++.+ . .+.+..|..++
T Consensus 106 ~~vR~iy~rAL~~--P~~--~~~~lw~~Y~~fE~~~~~~~~~~~~~~-------------------~--~~~y~~ar~~y 160 (493)
T 2uy1_A 106 EKIRNGYMRALQT--PMG--SLSELWKDFENFELELNKITGKKIVGD-------------------T--LPIFQSSFQRY 160 (493)
T ss_dssp HHHHHHHHHHHTS--CCT--THHHHHHHHHHHHHHHCHHHHHHHHHH-------------------H--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--hhh--hHHHHHHHHHHHHHHhccccHHHHHHH-------------------H--hHHHHHHHHHH
Confidence 8899999999863 221 11222111111 1111112222111 1 11233344444
Q ss_pred HHhhcC--CCChhhHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048533 294 RDIKGA--TPNHVTYTTLIDGYCRAN-------DLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEM 364 (591)
Q Consensus 294 ~~~~~~--~~~~~~~~~li~~~~~~g-------~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 364 (591)
+.+... ..+...|...+..-...+ ..+.+..+|+++.... +.+...|...+..+.+.|+.++|..++++.
T Consensus 161 ~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erA 239 (493)
T 2uy1_A 161 QQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERG 239 (493)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 433321 112334544444322211 0345666777777642 345667777777777888888888888888
Q ss_pred HhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048533 365 NEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAG---------LML---DQFTYKALIHGFCKAKEMDIAKELLF 432 (591)
Q Consensus 365 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~ 432 (591)
... +.+...|.. |....+.++. ++.+.+.- ..+ ....|...+....+.++.+.|..+|.
T Consensus 240 i~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~ 310 (493)
T 2uy1_A 240 IEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFI 310 (493)
T ss_dssp HHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 876 334333332 2222111221 22222110 001 12446666666667788999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc
Q 048533 433 GMLDAGFSPSYCSYSWLVDGYCN-KNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILG 511 (591)
Q Consensus 433 ~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 511 (591)
.+ ... ..+...|......-.. .++.+.|..+|+...+.-+ -++..+...++.....|+.+.|+.+|+++. .
T Consensus 311 ~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k 382 (493)
T 2uy1_A 311 EL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP-DSTLLKEEFFLFLLRIGDEENARALFKRLE-----K 382 (493)
T ss_dssp HH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----C
T ss_pred Hh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----H
Confidence 99 321 2344555433322222 3369999999999988632 246667778888888999999999999973 2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 512 DSVIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 512 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
....|...+..-...|+.+.+..+++++..
T Consensus 383 ~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 383 TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 578888888888889999999999998875
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.17 E-value=7e-09 Score=94.44 Aligned_cols=242 Identities=9% Similarity=-0.020 Sum_probs=153.3
Q ss_pred HHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhH
Q 048533 140 YANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKV 219 (591)
Q Consensus 140 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 219 (591)
..-.|++..++.-.. +............+.+++...|+++.. ....|....+..+... ...+ |
T Consensus 23 ~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT----C
T ss_pred HHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc----H
Confidence 444688888887433 332232344455566888888887642 1223343344444333 3322 6
Q ss_pred HHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 048533 220 EKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGIS-PDIVTYNSLIHGFCREGRMREARRLFRDIKG 298 (591)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 298 (591)
...+++....+ +++..++..+..++...|++++|++++.+.+..|.. -+...+..++..+.+.|+.+.|.+.++++..
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777654 445555667778888888888888888887665431 2456777788888888888888888888877
Q ss_pred CCC-----ChhhHHHHHHH--HHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 048533 299 ATP-----NHVTYTTLIDG--YCR--ANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKK- 368 (591)
Q Consensus 299 ~~~-----~~~~~~~li~~--~~~--~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~- 368 (591)
..| +..+...++.+ ... .+++++|..+|+++... .|+..+...++.++.+.|++++|...++.+.+.-
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 666 24444444444 222 33788888888887665 3453333444457778888888888887655420
Q ss_pred --------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 048533 369 --------IAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAG 403 (591)
Q Consensus 369 --------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 403 (591)
-+.+..++..+|......|+ +|.+++.++.+..
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 12355666566666666676 6777777777763
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.17 E-value=7.9e-10 Score=97.16 Aligned_cols=167 Identities=11% Similarity=0.003 Sum_probs=91.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHH----------------HHHHHHhcCChhHHHHHHHHHHHCCC
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTV----------------LLNSLAKDRLTDMVWKVYKKMVQLGV 196 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~~~ 196 (591)
+...+..+...|++++|+..|+++.+.++. +...+.. +..++.+.|++++|+..|++..+..+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 444556688999999999999999987654 4555555 55556666666666666666665544
Q ss_pred CCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHH
Q 048533 197 VANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGM--HYEALAVQDRMEREGISPDIVTYN 274 (591)
Q Consensus 197 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~ 274 (591)
. +...+..+..++...|++++|...|++....+ |.+..+|..+..++...|. .+.+...+..... ..|....+.
T Consensus 86 ~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~ 161 (208)
T 3urz_A 86 N-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARY 161 (208)
T ss_dssp T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHH
Confidence 3 45555555666666666666666666655543 2344455555555544332 2233333333321 112222233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCChh
Q 048533 275 SLIHGFCREGRMREARRLFRDIKGATPNHV 304 (591)
Q Consensus 275 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 304 (591)
....++...|++++|...|++.....|+..
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 334444445555556665555555555543
No 97
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.16 E-value=2.5e-10 Score=97.38 Aligned_cols=154 Identities=10% Similarity=0.031 Sum_probs=92.3
Q ss_pred hcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCcc
Q 048533 51 YNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNS 130 (591)
Q Consensus 51 ~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (591)
+...|++++|+..|+.+++..|+ +..++..++.++.+.|++++|+..++++....+ +..
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~---------------- 74 (176)
T 2r5s_A 16 LLQQGEHAQALNVIQTLSDELQS---RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNS---------------- 74 (176)
T ss_dssp HHHTTCHHHHHHHHHTSCHHHHT---SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHH----------------
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChH----------------
Confidence 33447777777777777776666 677777777777777777777777777665443 111
Q ss_pred chHHHHHHH-HHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 048533 131 HVLSWLVIF-YANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVA-NIHLYNVLIH 208 (591)
Q Consensus 131 ~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~ 208 (591)
....+... +...+...+|+..|++..+.++. +...+..+..++...|++++|...|+++.+..+.+ +...+..+..
T Consensus 75 -~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~ 152 (176)
T 2r5s_A 75 -YKSLIAKLELHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMD 152 (176)
T ss_dssp -HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHH
T ss_pred -HHHHHHHHHHHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHH
Confidence 11111111 11222333456666666665544 56666666666666777777777776666655432 2345566666
Q ss_pred HHHccCChhhHHHHHHHHh
Q 048533 209 ACCKSSDVDKVEKLLCEME 227 (591)
Q Consensus 209 ~~~~~g~~~~a~~~~~~~~ 227 (591)
.+...|+.++|...|++..
T Consensus 153 ~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 153 ILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHCSSCHHHHHHHHHH
T ss_pred HHHHhCCCCcHHHHHHHHH
Confidence 6666666666666666543
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.15 E-value=5.9e-10 Score=116.63 Aligned_cols=151 Identities=13% Similarity=-0.057 Sum_probs=130.3
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHH
Q 048533 164 HLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIA 243 (591)
Q Consensus 164 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 243 (591)
+...+..+..++...|++++|++.|+++.+.++. +...|..+..++...|++++|...|++..+.+ +.+...|..+..
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~ 509 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAA 509 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 6778999999999999999999999999988665 78889999999999999999999999998874 446788999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC-hhhHHHHHHHHHhcCC
Q 048533 244 LYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPN-HVTYTTLIDGYCRAND 318 (591)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~ 318 (591)
++.+.|++++ ++.|++..+.+. .+...+..+..++.+.|++++|...|++.....|+ ...+..+..++...++
T Consensus 510 ~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 510 TAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999 999999988643 36788999999999999999999999999887787 5677777777766554
No 99
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.15 E-value=1e-09 Score=100.54 Aligned_cols=103 Identities=10% Similarity=0.011 Sum_probs=86.0
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccC---HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC-HH
Q 048533 127 DGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPH---LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV-AN-IH 201 (591)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~ 201 (591)
+.++..+..++..+.+.|++++|+..|+++++..+. + ..++..+..++.+.|+++.|+..|+.+.+..+. |. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 456678888899999999999999999999987654 3 678889999999999999999999999987542 12 34
Q ss_pred HHHHHHHHHHc--------cCChhhHHHHHHHHhhCC
Q 048533 202 LYNVLIHACCK--------SSDVDKVEKLLCEMEFKD 230 (591)
Q Consensus 202 ~~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~ 230 (591)
.+..+..++.. .|++++|...|+++....
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 56677788888 899999999999988763
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.13 E-value=2.3e-09 Score=95.59 Aligned_cols=181 Identities=9% Similarity=-0.059 Sum_probs=122.7
Q ss_pred hhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCC
Q 048533 49 NLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDG 128 (591)
Q Consensus 49 ~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (591)
..+...|++++|+..|+.+++..|..+....++..++.++.+.|++++|+..|+++.+..|.....
T Consensus 12 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~-------------- 77 (225)
T 2yhc_A 12 QQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-------------- 77 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH--------------
Confidence 334455999999999999999888755556788999999999999999999999999877543221
Q ss_pred ccchHHHHHHHHH------------------hcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 048533 129 NSHVLSWLVIFYA------------------NLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKK 190 (591)
Q Consensus 129 ~~~~~~~l~~~~~------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 190 (591)
..++..++.+|. ..|++++|+..|+++++..+. +..++...... ..+...
T Consensus 78 -~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~ 145 (225)
T 2yhc_A 78 -DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDR 145 (225)
T ss_dssp -HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHH
T ss_pred -HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHH
Confidence 113333444443 467888888888888877544 22222211110 000111
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCc----ccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048533 191 MVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADL----FTYNTLIALYCKKGMHYEALAVQDRMEREG 265 (591)
Q Consensus 191 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 265 (591)
+ ......+...+.+.|++++|...|+++.+.. |+. .++..+..++.+.|++++|.+.++.+...+
T Consensus 146 ~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 146 L--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp H--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred H--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1 0112345667788888888888888887653 332 457778888888888888888888887764
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.13 E-value=7.1e-10 Score=94.57 Aligned_cols=166 Identities=10% Similarity=0.005 Sum_probs=120.6
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
........+..+.+.|++++|+..|+++.+.+ |.+..++..++.+|.+.|++++|+..|+++
T Consensus 5 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------------------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a 66 (176)
T 2r5s_A 5 PDEQLLKQVSELLQQGEHAQALNVIQTLSDEL------------------QSRGDVKLAKADCLLETKQFELAQELLATI 66 (176)
T ss_dssp -CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH------------------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 44556778888999999999999998887654 445667888888899999999999999988
Q ss_pred hhCCCccCHHhHHHHHHH-HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCc-C
Q 048533 157 RVHNLMPHLHACTVLLNS-LAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRA-D 234 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~ 234 (591)
.+..+ +...+..+... +...+....|+..+++..+..+. +...+..+...+...|++++|...|+++......+ +
T Consensus 67 ~~~~p--~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 143 (176)
T 2r5s_A 67 PLEYQ--DNSYKSLIAKLELHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQD 143 (176)
T ss_dssp CGGGC--CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT
T ss_pred hhccC--ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh
Confidence 77654 43333322222 12223344578888888876554 67778888888888888888888888888764322 2
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048533 235 LFTYNTLIALYCKKGMHYEALAVQDRMER 263 (591)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 263 (591)
...+..+..++...|+.++|...|++...
T Consensus 144 ~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 144 GEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp THHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 45788888888888888888888876653
No 102
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.12 E-value=2.1e-08 Score=91.28 Aligned_cols=177 Identities=8% Similarity=-0.013 Sum_probs=109.8
Q ss_pred HHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCChhhHHHHHHHHh
Q 048533 149 GLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGV-VANIHLYNVLIHACCKSSDVDKVEKLLCEME 227 (591)
Q Consensus 149 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 227 (591)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+++.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777776654 33555556777777777888888888877766554 1245566677777778888888888887776
Q ss_pred hCCCCc-----CcccHHHHHHH--HHhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 048533 228 FKDVRA-----DLFTYNTLIAL--YCKKG--MHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKG 298 (591)
Q Consensus 228 ~~~~~~-----~~~~~~~li~~--~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 298 (591)
+. .| +..+...++.+ ....| ++++|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+..
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 64 33 23444444444 22233 777777777777654 34433333344467777777777777776544
Q ss_pred C----------CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 299 A----------TP-NHVTYTTLIDGYCRANDLEEALRLREVMAAK 332 (591)
Q Consensus 299 ~----------~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 332 (591)
. .| +..+...+|......|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 2 13 34455455555555565 667777777765
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.11 E-value=2.1e-09 Score=99.64 Aligned_cols=173 Identities=13% Similarity=0.044 Sum_probs=129.6
Q ss_pred HhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCCh
Q 048533 67 AESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMT 146 (591)
Q Consensus 67 ~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 146 (591)
+....|. +...+..++..+.+.|++++|+..|+++...+ |.+..++..++.+|.+.|++
T Consensus 109 l~~~lp~---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------------------P~~~~a~~~la~~~~~~g~~ 167 (287)
T 3qou_A 109 LDXVLPR---EEELXAQQAMQLMQESNYTDALPLLXDAWQLS------------------NQNGEIGLLLAETLIALNRS 167 (287)
T ss_dssp HHHHSCC---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------------------TSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCC---chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC------------------CcchhHHHHHHHHHHHCCCH
Confidence 3333454 67778888888889999999999998888765 45566777888889999999
Q ss_pred HHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHH
Q 048533 147 QDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEM 226 (591)
Q Consensus 147 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 226 (591)
++|+..++++...++. ...........+...++.+.|...+++..+..+. +...+..+...+...|++++|...|.++
T Consensus 168 ~~A~~~l~~~~~~~p~-~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~ 245 (287)
T 3qou_A 168 EDAEAVLXTIPLQDQD-TRYQGLVAQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGH 245 (287)
T ss_dssp HHHHHHHTTSCGGGCS-HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCchhhcc-hHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 9999999888776542 2222333334466777788888888888887654 6778888888888889999998888888
Q ss_pred hhCCCC-cCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 048533 227 EFKDVR-ADLFTYNTLIALYCKKGMHYEALAVQDRME 262 (591)
Q Consensus 227 ~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 262 (591)
.+.... .+...+..++..+...|+.++|...|++..
T Consensus 246 l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 246 LRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 776422 125678888888888888888888877654
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.10 E-value=1.7e-09 Score=100.34 Aligned_cols=166 Identities=10% Similarity=-0.072 Sum_probs=136.8
Q ss_pred hHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHH
Q 048533 40 STAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNAL 119 (591)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (591)
+......++..+...|++++|+..|+.+++..|+ +..++..++.++.+.|++++|...++++....+..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~-------- 184 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ---NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT-------- 184 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS---CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH--------
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc---chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch--------
Confidence 3333444555666679999999999999999987 88999999999999999999999999988765421
Q ss_pred HhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-
Q 048533 120 VKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVA- 198 (591)
Q Consensus 120 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~- 198 (591)
..........+.+.++.++|+..|++..+.++. +...+..+...+...|++++|+..|.++.+..+..
T Consensus 185 ----------~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~ 253 (287)
T 3qou_A 185 ----------RYQGLVAQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAA 253 (287)
T ss_dssp ----------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG
T ss_pred ----------HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence 112222334577788899999999999998765 88899999999999999999999999999986542
Q ss_pred CHHHHHHHHHHHHccCChhhHHHHHHHHh
Q 048533 199 NIHLYNVLIHACCKSSDVDKVEKLLCEME 227 (591)
Q Consensus 199 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 227 (591)
+...+..++..+...|+.++|...+++..
T Consensus 254 ~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 254 DGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp GGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 26788999999999999999999888764
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.10 E-value=2.8e-10 Score=94.04 Aligned_cols=146 Identities=12% Similarity=-0.002 Sum_probs=94.6
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCcc
Q 048533 84 MIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMP 163 (591)
Q Consensus 84 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 163 (591)
|+.++...|++++|+..++...... +.++..+..++..|.+.|++++|++.|+++++.++.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~------------------p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~- 63 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP------------------RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER- 63 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH------------------HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC------------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 4555666677777777777665432 233445666777777778888888877777777655
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHH-HHHHhhCCCCcCcccHHHHH
Q 048533 164 HLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKL-LCEMEFKDVRADLFTYNTLI 242 (591)
Q Consensus 164 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~li 242 (591)
+..+|..+..++...|+++.|+..|+...+.++. +..++..+...+.+.|++++|.+. +++..+.. |.+..+|....
T Consensus 64 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~ 141 (150)
T 4ga2_A 64 DPKAHRFLGLLYELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKE 141 (150)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 6777777777777777777777777777776554 566777777777777777665544 46655543 33455566555
Q ss_pred HHHHhcCC
Q 048533 243 ALYCKKGM 250 (591)
Q Consensus 243 ~~~~~~g~ 250 (591)
..+...|+
T Consensus 142 ~ll~~~G~ 149 (150)
T 4ga2_A 142 QLLDCEGE 149 (150)
T ss_dssp HHHHTCCC
T ss_pred HHHHHhCc
Confidence 55555553
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.09 E-value=4.7e-09 Score=93.50 Aligned_cols=193 Identities=10% Similarity=-0.002 Sum_probs=130.5
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+...++.++..+.+.|++++|+..|+++....+.+ +....++..++.+|.+.|++++|+..|+++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~---------------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~ 67 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFG---------------PYSQQVQLDLIYAYYKNADLPLAQAAIDRF 67 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS---------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45677888999999999999999999998865422 222357788899999999999999999999
Q ss_pred hhCCCccCH--HhHHHHHHHHHh------------------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 048533 157 RVHNLMPHL--HACTVLLNSLAK------------------DRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDV 216 (591)
Q Consensus 157 ~~~~~~~~~--~~~~~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 216 (591)
.+..+.... .++..+..++.. .|++++|+..|+.+.+..+. +...+.......
T Consensus 68 l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~------ 140 (225)
T 2yhc_A 68 IRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV------ 140 (225)
T ss_dssp HHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH------
T ss_pred HHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH------
Confidence 987654221 245555555543 34555555566555554322 222221111100
Q ss_pred hhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHH
Q 048533 217 DKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPD--IVTYNSLIHGFCREGRMREARRLFR 294 (591)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 294 (591)
.+...+. .....+...+.+.|++++|+..|+++.+...... ...+..+..++.+.|++++|.+.++
T Consensus 141 ----~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~ 208 (225)
T 2yhc_A 141 ----FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAK 208 (225)
T ss_dssp ----HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 0000000 0113567788999999999999999988632211 2568889999999999999999999
Q ss_pred HhhcCCCCh
Q 048533 295 DIKGATPNH 303 (591)
Q Consensus 295 ~~~~~~~~~ 303 (591)
.+....|+.
T Consensus 209 ~l~~~~~~~ 217 (225)
T 2yhc_A 209 IIAANSSNT 217 (225)
T ss_dssp HHHHCCSCC
T ss_pred HHHhhCCCc
Confidence 988766653
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.09 E-value=1.4e-09 Score=111.95 Aligned_cols=162 Identities=8% Similarity=-0.029 Sum_probs=123.0
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHH
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLS 134 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (591)
|++++|+..|+.+.+..|+ +..++..++.++.+.|++++|+..++++.+.+ +.+..++.
T Consensus 3 g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~~~~ 61 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ---DFVAWLMLADAELGMGDTTAGEMAVQRGLALH------------------PGHPEAVA 61 (568)
T ss_dssp ------------------C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS------------------TTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCCHHHHH
Confidence 7889999999999887776 78899999999999999999999999998754 44566788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-
Q 048533 135 WLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKS- 213 (591)
Q Consensus 135 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~- 213 (591)
.++.+|...|++++|++.|+++.+.++. +...+..+..++.+.|++++|.+.|++..+.... +...+..+...+...
T Consensus 62 ~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~ 139 (568)
T 2vsy_A 62 RLGRVRWTQQRHAEAAVLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLC 139 (568)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhh
Confidence 8999999999999999999999988765 7889999999999999999999999999987654 677888899999999
Q ss_pred --CChhhHHHHHHHHhhCCCCcCcccHHH
Q 048533 214 --SDVDKVEKLLCEMEFKDVRADLFTYNT 240 (591)
Q Consensus 214 --g~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (591)
|+.++|.+.+++..+.+ +.+...|..
T Consensus 140 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 167 (568)
T 2vsy_A 140 DWRALDVLSAQVRAAVAQG-VGAVEPFAF 167 (568)
T ss_dssp CCTTHHHHHHHHHHHHHHT-CCCSCHHHH
T ss_pred ccccHHHHHHHHHHHHhcC-CcccChHHH
Confidence 99999999999988764 233444443
No 108
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.08 E-value=1e-07 Score=87.74 Aligned_cols=218 Identities=11% Similarity=0.013 Sum_probs=163.2
Q ss_pred CCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcC--ChHHHHHHHHHHhhCCCccCHHhHH
Q 048533 92 KHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLK--MTQDGLQVFDQMRVHNLMPHLHACT 169 (591)
Q Consensus 92 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~ 169 (591)
...++|+.+++.++..+| ....+++.-..++...| +++++++.++.++..+++ +..+|+
T Consensus 47 e~s~~aL~~t~~~L~~nP------------------~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~ 107 (306)
T 3dra_A 47 EYSERALHITELGINELA------------------SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWN 107 (306)
T ss_dssp CCSHHHHHHHHHHHHHCT------------------TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHH
T ss_pred CCCHHHHHHHHHHHHHCc------------------HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHH
Confidence 344588888888888764 34445666666777777 899999999999998877 777887
Q ss_pred HHHHHH----Hhc---CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh--hHHHHHHHHhhCCCCcCcccHHH
Q 048533 170 VLLNSL----AKD---RLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVD--KVEKLLCEMEFKDVRADLFTYNT 240 (591)
Q Consensus 170 ~ll~~~----~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~ 240 (591)
.-...+ ... +++++++++++.+.+..++ +..+|+.-.-++.+.|.++ ++++.++++...+ +.|..+|+.
T Consensus 108 ~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~ 185 (306)
T 3dra_A 108 YRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSH 185 (306)
T ss_dssp HHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 776666 555 7888999999999988766 7888888777788888888 8889999988875 347777887
Q ss_pred HHHHHHhcCC------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHhhcC----CCChhhHHHH
Q 048533 241 LIALYCKKGM------HYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMRE-ARRLFRDIKGA----TPNHVTYTTL 309 (591)
Q Consensus 241 li~~~~~~g~------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~----~~~~~~~~~l 309 (591)
....+...+. ++++++.+++++...+. |...|+.+...+.+.|+... +..+..++... ..+...+..+
T Consensus 186 R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l 264 (306)
T 3dra_A 186 RFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETL 264 (306)
T ss_dssp HHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHH
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence 7777777666 78888888888776543 77788877777777776433 44455555432 2356677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 048533 310 IDGYCRANDLEEALRLREVMAA 331 (591)
Q Consensus 310 i~~~~~~g~~~~a~~~~~~~~~ 331 (591)
+.+|.+.|+.++|.++++.+.+
T Consensus 265 a~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 265 AKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHccCCHHHHHHHHHHHHh
Confidence 7788888888888888888775
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.06 E-value=4.3e-08 Score=86.18 Aligned_cols=178 Identities=13% Similarity=0.053 Sum_probs=122.3
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 048533 356 DANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAK----EMDIAKELL 431 (591)
Q Consensus 356 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 431 (591)
+|.+.|++..+.| +...+..+...|...+++++|...|++..+.+ ++..+..+...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4556666666653 56667777777777777777777777776654 55666666666666 5 777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 048533 432 FGMLDAGFSPSYCSYSWLVDGYCN----KNNEEALLKLLDEFVSRGLC-VDVSVYRALIRRFCK----KEKVDYAQRLFN 502 (591)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~ 502 (591)
++..+.+ +...+..+...|.. .+++++|.+++++..+.+.. .++..+..|...|.. .+++++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7777654 45566666666665 67788888888887776431 026677777777777 677888888888
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHHc-C-----ChhHHHHHHHHHHHCCCC
Q 048533 503 LMQGNGILGDSVIYTSLAYAYWRA-G-----EPKACSDILDDMYRRRLM 545 (591)
Q Consensus 503 ~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~~ 545 (591)
+..+. ..+...+..|...|... | ++++|..+|++..+.|..
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 88775 23455666677777653 3 788888888888887743
No 110
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.05 E-value=6.6e-09 Score=83.78 Aligned_cols=130 Identities=17% Similarity=0.067 Sum_probs=90.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACC 211 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 211 (591)
++..++..|...|++++|+.+++++.+.++. +...+..+...+...|+++.|...++++.+.+.. +...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 4556677777888888888888887776543 5667777777777778888888888877766543 5566666777777
Q ss_pred ccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 212 KSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 212 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
..|++++|.+.++++.... +.+..++..+...+...|++++|...++++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777766543 234556666666777777777777777666553
No 111
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.04 E-value=2.1e-07 Score=92.80 Aligned_cols=125 Identities=8% Similarity=-0.086 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 374 VTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCK-AKEMDIAKELLFGMLDAGFSPSYCSYSWLVDG 452 (591)
Q Consensus 374 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (591)
..|...+....+.++.+.|..+|+++ .. ...+...|......-.. .++.+.|..+|+..++.. +.++..+...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 45666777777777888888888888 32 12344555433332222 336888999998888743 2234455556676
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 453 YCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQG 506 (591)
Q Consensus 453 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 506 (591)
....|+.+.|..+|+.+.+ ....|...+..-...|+.+.+..+++++.+
T Consensus 364 e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7778888888888888732 567788888777788999888888888764
No 112
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=1.4e-08 Score=81.83 Aligned_cols=129 Identities=13% Similarity=0.168 Sum_probs=76.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048533 411 YKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCK 490 (591)
Q Consensus 411 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 490 (591)
+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.++. +...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHH
Confidence 3444555555566666666665555432 234455555556666666666666666666554322 45556666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 491 KEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 491 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
.|++++|.+.++++.+.. +.+...+..++.++...|++++|...++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 666666666666666542 224556666666666677777777776666654
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.02 E-value=9.7e-09 Score=96.32 Aligned_cols=200 Identities=14% Similarity=0.003 Sum_probs=110.5
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc-CCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchH
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTK-NKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL 133 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (591)
|++++|..+++.+.+..+. + +.+ .|++++|...|+++.
T Consensus 5 ~~~~eA~~~~~~a~k~~~~---~----------~~~~~~~~~~A~~~~~~a~---------------------------- 43 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKT---S----------FMKWKPDYDSAASEYAKAA---------------------------- 43 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCC---C----------SSSCSCCHHHHHHHHHHHH----------------------------
T ss_pred chHHHHHHHHHHHHHHccc---c----------ccCCCCCHHHHHHHHHHHH----------------------------
Confidence 6778888888888775543 1 111 466777766665542
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCc-----cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CC--CHHHH
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQMRVHNLM-----PHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGV---VA--NIHLY 203 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~ 203 (591)
..|...|++++|+..|.++.+.... .-..+|+.+...|...|++++|+..|++..+... .+ -..++
T Consensus 44 ----~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~ 119 (307)
T 2ifu_A 44 ----VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMAL 119 (307)
T ss_dssp ----HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred ----HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2366677777777777776553211 0133566666777777777777777776654311 01 12345
Q ss_pred HHHHHHHHccCChhhHHHHHHHHhhCCCCc-----CcccHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHH
Q 048533 204 NVLIHACCKSSDVDKVEKLLCEMEFKDVRA-----DLFTYNTLIALYCKKGMHYEALAVQDRMERE----GISPD-IVTY 273 (591)
Q Consensus 204 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~ 273 (591)
..+...|.. |++++|+..|++........ ...++..+...+...|++++|+..|++.... +..+. ..++
T Consensus 120 ~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 198 (307)
T 2ifu_A 120 DRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKC 198 (307)
T ss_dssp HHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHH
Confidence 555666666 66776666666654321000 0234555556666666666666666655442 11111 1234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCC
Q 048533 274 NSLIHGFCREGRMREARRLFRDIKGATP 301 (591)
Q Consensus 274 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 301 (591)
..++.++...|++++|...|++.. ..|
T Consensus 199 ~~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 199 IAQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 444455555566666666666555 444
No 114
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.00 E-value=1e-07 Score=88.69 Aligned_cols=185 Identities=6% Similarity=-0.005 Sum_probs=139.3
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCC-CchHHHHHHHHHHHcCCCCchHHHHHHHh
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNK-HFKSAQNMLEKIALRDFLSTPSVLNALVK 121 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 121 (591)
+-..++.+..+.+..++|++.++.++..+|. ...+++.-..++...| .+++++.+++.++..++
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~---~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP------------ 120 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPA---HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL------------ 120 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCch---hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC------------
Confidence 4445555556667788999999999999987 7788888888888888 59999999999998764
Q ss_pred hcCCCCCccchHHHHHHHHHhc-C-ChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChh--------HHHHHHHHH
Q 048533 122 IHDDPDGNSHVLSWLVIFYANL-K-MTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTD--------MVWKVYKKM 191 (591)
Q Consensus 122 ~~~~~~~~~~~~~~l~~~~~~~-~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~ 191 (591)
.+..+++....++.+. + ++++++++++++++.+++ |..+|+.-.-.+.+.+.++ ++++.++++
T Consensus 121 ------Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~ 193 (349)
T 3q7a_A 121 ------KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEM 193 (349)
T ss_dssp ------CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred ------CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHH
Confidence 3445565555555555 6 889999999999998877 8889888777777666666 888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCC-------hhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCCh
Q 048533 192 VQLGVVANIHLYNVLIHACCKSSD-------VDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMH 251 (591)
Q Consensus 192 ~~~~~~~~~~~~~~ll~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 251 (591)
.+.++. |...|+.....+.+.+. ++++++.+++.+... +-|...|+.+-..+.+.|+.
T Consensus 194 I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 194 LRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC
T ss_pred HHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCC
Confidence 887766 77888887777777765 567777777776654 44666777666666655543
No 115
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.00 E-value=7.6e-08 Score=84.61 Aligned_cols=176 Identities=14% Similarity=0.033 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcC----CHHHHHHHH
Q 048533 321 EALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIG----DTASAMKVK 396 (591)
Q Consensus 321 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~ 396 (591)
+|+++|++..+.| ++..+..+...+...+++++|...|++..+.| +...+..|...|.. + +.++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4667777777764 66777777777878888888888888887765 56677777777776 6 788888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 048533 397 NRMLEAGLMLDQFTYKALIHGFCK----AKEMDIAKELLFGMLDAGFS-PSYCSYSWLVDGYCN----KNNEEALLKLLD 467 (591)
Q Consensus 397 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~ 467 (591)
++..+.+ ++..+..+...|.. .+++++|...|++..+.+.. .+...+..|...|.. .+++++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8887754 66777777777776 77888888888888876521 026677778888877 778899999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 048533 468 EFVSRGLCVDVSVYRALIRRFCKK-E-----KVDYAQRLFNLMQGNG 508 (591)
Q Consensus 468 ~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 508 (591)
+..+. ..++..+..|...|... | ++++|..+|++..+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 88876 22455677777777653 3 7899999998888776
No 116
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.96 E-value=7.4e-09 Score=82.33 Aligned_cols=103 Identities=12% Similarity=-0.070 Sum_probs=56.6
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcC
Q 048533 45 KVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHD 124 (591)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (591)
.-++..+.+.|++++|+..|+.+++..|. +..++..++.++.+.|++++|+..|+++++.+
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---------------- 77 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPE---NAILYSNRAACLTKLMEFQRALDDCDTCIRLD---------------- 77 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh----------------
Confidence 34455555556666666666666655554 55555566666666666666666666555543
Q ss_pred CCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHH
Q 048533 125 DPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACT 169 (591)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 169 (591)
|.+..++..++.+|...|++++|++.|++.++.++. +..++.
T Consensus 78 --p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~ 119 (126)
T 4gco_A 78 --SKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS-NEEARE 119 (126)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred --hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcC-CHHHHH
Confidence 223344555555556666666666666655555433 333333
No 117
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.93 E-value=5.9e-07 Score=83.57 Aligned_cols=176 Identities=14% Similarity=0.012 Sum_probs=129.1
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCccCHH
Q 048533 88 LTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLK-MTQDGLQVFDQMRVHNLMPHLH 166 (591)
Q Consensus 88 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~ 166 (591)
+.+.+..++|+++++.++..++ .+..+++....++...| .++++++.++.++..+++ +..
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP------------------~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~ 124 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNP------------------AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQ 124 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCT------------------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHH
T ss_pred HHhCCCCHHHHHHHHHHHHhCc------------------hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHH
Confidence 3344555688888888888763 34455666666666777 589999999999998887 888
Q ss_pred hHHHHHHHHHhc-C-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh--------hHHHHHHHHhhCCCCcCcc
Q 048533 167 ACTVLLNSLAKD-R-LTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVD--------KVEKLLCEMEFKDVRADLF 236 (591)
Q Consensus 167 ~~~~ll~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~ 236 (591)
+|+.-...+... + ++++++++++.+.+..++ |..+|+.-.-++.+.|.++ ++++.+++++..+ +.|..
T Consensus 125 aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~S 202 (349)
T 3q7a_A 125 VWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNS 202 (349)
T ss_dssp HHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHH
Confidence 898888777776 6 888999999999987766 7778777666666666666 7888888887765 34777
Q ss_pred cHHHHHHHHHhcCC-------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048533 237 TYNTLIALYCKKGM-------HYEALAVQDRMEREGISPDIVTYNSLIHGFCREGR 285 (591)
Q Consensus 237 ~~~~li~~~~~~g~-------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 285 (591)
+|+.....+.+.+. ++++++.+++.+...+. |...|+.+-..+.+.|.
T Consensus 203 AW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 203 AWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 78877777777765 57777777777765433 66677666666655554
No 118
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.93 E-value=1.3e-08 Score=83.39 Aligned_cols=126 Identities=10% Similarity=-0.026 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHhccccchhcCCCCCCCCChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc
Q 048533 11 TKFIKTISAIMLKGHWAKLLNPNIASSLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTK 90 (591)
Q Consensus 11 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~ 90 (591)
.++...|...+..+.. ++..+...|+.......++..+...|++++|+..|+.+++..|. +..+|..++.++..
T Consensus 9 ~~~~~~l~~~~~~~~~---l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~---~~~~~~~lg~~~~~ 82 (151)
T 3gyz_A 9 ESISTAVIDAINSGAT---LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY---NVDYIMGLAAIYQI 82 (151)
T ss_dssp CHHHHHHHHHHHTSCC---TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCC---HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHH
Confidence 3444445555444321 11222233333334444455555556666666666666666655 56666666666666
Q ss_pred CCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 91 NKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 91 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
.|++++|+..|+++...+ |.++.++..++.+|.+.|++++|+..|+++++..
T Consensus 83 ~g~~~~Ai~~~~~al~l~------------------P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 83 KEQFQQAADLYAVAFALG------------------KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp TTCHHHHHHHHHHHHHHS------------------SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HccHHHHHHHHHHHHhhC------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 666666666666666544 3344556666666666666666666666666653
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.91 E-value=1.5e-08 Score=80.61 Aligned_cols=111 Identities=14% Similarity=0.024 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
....+...+..+.+.|++++|+..|+++++.+ |.+..++..++.+|.+.|++++|+..|+++
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 73 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD------------------PENAILYSNRAACLTKLMEFQRALDDCDTC 73 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCCHHHHHHHhhHHHhhccHHHHHHHHHHH
Confidence 45667788889999999999999999888765 445667888888899999999999999998
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLI 207 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 207 (591)
++.++. +..+|..+..++...|++++|++.|++..+..+. +...+..+.
T Consensus 74 l~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l~ 122 (126)
T 4gco_A 74 IRLDSK-FIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS-NEEAREGVR 122 (126)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHhhhh-hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHHH
Confidence 887765 7788888888999999999999999988887654 555555443
No 120
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.90 E-value=2.8e-09 Score=95.70 Aligned_cols=212 Identities=10% Similarity=-0.086 Sum_probs=148.5
Q ss_pred CCChhHHHHHHHHHhhhCCCCCCCHHHHHHH-------HHHHHcCCCchHHHHHHHHHHHcCCCCchHHHH-HHHh--hc
Q 048533 54 CHIPSLSCAFFKWAESAVPNYKHSLQSHWTM-------IHILTKNKHFKSAQNMLEKIALRDFLSTPSVLN-ALVK--IH 123 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~--~~ 123 (591)
.+++..|+..|..+.+..|. ..++|..+ +.++.+.++..+++..+.......+..-...+. .-+- +.
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~---~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDES---ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred CCCHHHHHHHHHHHHHhChh---hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 58999999999999999998 78888888 688888888888888777766532211000000 0000 00
Q ss_pred CCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HH
Q 048533 124 DDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVAN--IH 201 (591)
Q Consensus 124 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~ 201 (591)
.......++....+..+...|++++|.++|+.+...++. +. ....+...+.+.++++.|+..|+...+.. .|. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 001122345666788899999999999999998876643 33 66667778889999999999998665532 111 23
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHhhCCCCcC--cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 048533 202 LYNVLIHACCKSSDVDKVEKLLCEMEFKDVRAD--LFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTY 273 (591)
Q Consensus 202 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 273 (591)
.+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++... .|+...+
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~ 244 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVA 244 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHH
Confidence 566778888999999999999998875432133 335667778888899999999999998876 4443333
No 121
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.90 E-value=5.2e-09 Score=85.85 Aligned_cols=111 Identities=7% Similarity=-0.001 Sum_probs=87.3
Q ss_pred HHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhc
Q 048533 64 FKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANL 143 (591)
Q Consensus 64 f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (591)
|+.+++..|+ +..+++.++..+.+.|++++|+..|+++...+ |.++..+..++.+|...
T Consensus 25 l~~al~l~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~------------------P~~~~~~~~lg~~~~~~ 83 (151)
T 3gyz_A 25 LKDINAIPDD---MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD------------------FYNVDYIMGLAAIYQIK 83 (151)
T ss_dssp TGGGCCSCHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHT
T ss_pred HHHHhCCCHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHH
Confidence 3344444555 67778888888888888888888888888765 45566777888888888
Q ss_pred CChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048533 144 KMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGV 196 (591)
Q Consensus 144 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 196 (591)
|++++|+..|+++.+.++. +..+|..+..++...|++++|+..|+...+...
T Consensus 84 g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 84 EQFQQAADLYAVAFALGKN-DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp TCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 8888888888888887765 677888888888888888888888888887643
No 122
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.89 E-value=2.3e-08 Score=102.77 Aligned_cols=155 Identities=8% Similarity=-0.103 Sum_probs=119.3
Q ss_pred CCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHH
Q 048533 91 NKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTV 170 (591)
Q Consensus 91 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 170 (591)
.|++++|++.++++.+.+ +.+..++..++..|.+.|++++|++.|++..+.++. +..++..
T Consensus 2 ~g~~~~A~~~~~~al~~~------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 62 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR------------------PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVAR 62 (568)
T ss_dssp -------------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 478899999998887654 445667888999999999999999999999998765 7889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhc--
Q 048533 171 LLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKK-- 248 (591)
Q Consensus 171 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 248 (591)
+..++...|++++|.+.+++..+.... +...+..+..++.+.|++++|.+.+++..+.. +.+...+..+..++...
T Consensus 63 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~ 140 (568)
T 2vsy_A 63 LGRVRWTQQRHAEAAVLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCD 140 (568)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhc
Confidence 999999999999999999999987654 67888999999999999999999999988764 34677888899999999
Q ss_pred -CChhHHHHHHHHHHHCCC
Q 048533 249 -GMHYEALAVQDRMEREGI 266 (591)
Q Consensus 249 -g~~~~a~~~~~~~~~~~~ 266 (591)
|++++|.+.+++..+.+.
T Consensus 141 ~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 141 WRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp CTTHHHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHhcCC
Confidence 999999999999887643
No 123
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.89 E-value=1.6e-08 Score=94.79 Aligned_cols=197 Identities=7% Similarity=-0.062 Sum_probs=110.9
Q ss_pred CCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHH
Q 048533 91 NKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTV 170 (591)
Q Consensus 91 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 170 (591)
.|++++|.++++++.+..... .+...+++++|...|+++
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~---------------------------~~~~~~~~~~A~~~~~~a-------------- 42 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS---------------------------FMKWKPDYDSAASEYAKA-------------- 42 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC---------------------------SSSCSCCHHHHHHHHHHH--------------
T ss_pred cchHHHHHHHHHHHHHHcccc---------------------------ccCCCCCHHHHHHHHHHH--------------
Confidence 467788888888776642110 011146777887777665
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHccCChhhHHHHHHHHhhC----CCCc-CcccHHH
Q 048533 171 LLNSLAKDRLTDMVWKVYKKMVQLGVVA-----NIHLYNVLIHACCKSSDVDKVEKLLCEMEFK----DVRA-DLFTYNT 240 (591)
Q Consensus 171 ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~ 240 (591)
...+...|++++|...|.+..+..... -..+|+.+...|...|++++|...|++.... |-+. -..++..
T Consensus 43 -~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 121 (307)
T 2ifu_A 43 -AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDR 121 (307)
T ss_dssp -HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred -HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456677888888888888776532110 1345666777777777777777777765432 1000 1234555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC---C----hhhHHH
Q 048533 241 LIALYCKKGMHYEALAVQDRMEREG----ISP-DIVTYNSLIHGFCREGRMREARRLFRDIKGATP---N----HVTYTT 308 (591)
Q Consensus 241 li~~~~~~g~~~~a~~~~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~----~~~~~~ 308 (591)
+..+|.. |++++|+..|++..+.. ..+ ...++..+...|...|++++|+..|++.....| + ...+..
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 6666655 66666666666654421 000 123455556666666666666666665543111 1 113334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 048533 309 LIDGYCRANDLEEALRLREVMA 330 (591)
Q Consensus 309 li~~~~~~g~~~~a~~~~~~~~ 330 (591)
+..++...|++++|...|++..
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHh
Confidence 4444555556666665555555
No 124
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.81 E-value=2e-08 Score=82.48 Aligned_cols=111 Identities=7% Similarity=-0.006 Sum_probs=76.1
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHh
Q 048533 63 FFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYAN 142 (591)
Q Consensus 63 ~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (591)
.|+.+++..|+ +..++..++..+.+.|++++|+..|+++...+ |.+..++..++.+|..
T Consensus 9 ~~~~al~~~p~---~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~~~~~lg~~~~~ 67 (148)
T 2vgx_A 9 TIAMLNEISSD---TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD------------------HYDSRFFLGLGACRQA 67 (148)
T ss_dssp SHHHHTTCCHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHH
T ss_pred hHHHHHcCCHh---hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC------------------cccHHHHHHHHHHHHH
Confidence 34555554544 56666777777777777777777777776654 3345566667777777
Q ss_pred cCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048533 143 LKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLG 195 (591)
Q Consensus 143 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 195 (591)
.|++++|+..|+++.+.++. +..++..+..++...|++++|...|+...+..
T Consensus 68 ~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 68 MGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 77777777777777776554 56667777777777777777777777776653
No 125
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.80 E-value=5.3e-08 Score=82.91 Aligned_cols=123 Identities=9% Similarity=0.043 Sum_probs=100.4
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccch
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHV 132 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (591)
..|++++|+..|+.+.+..|. +..++..++.++...|++++|+..|+++...+ +.+..+
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------------------p~~~~~ 80 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ---NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR------------------GENAEL 80 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------------CSCHHH
T ss_pred hccCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------CCCHHH
Confidence 348899999999999988886 78899999999999999999999999988754 334556
Q ss_pred HHHHHHH-HHhcCCh--HHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 133 LSWLVIF-YANLKMT--QDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV 197 (591)
Q Consensus 133 ~~~l~~~-~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (591)
+..++.+ |...|++ ++|+..|+++.+.++. +...+..+...+...|+++.|...|+.+.+..+.
T Consensus 81 ~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 81 YAALATVLYYQASQHMTAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 7777887 7788998 9999999999887655 6778888888899999999999999998887543
No 126
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.80 E-value=4.5e-07 Score=79.73 Aligned_cols=125 Identities=13% Similarity=-0.025 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048533 377 NTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNK 456 (591)
Q Consensus 377 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (591)
..+...+...|++++|...|++.. .|+...+..+...+...|++++|...+++.++.. +.+...+..+..+|...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 334444455555555555554442 3344455555555555555555555555554432 22344444555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 457 NNEEALLKLLDEFVSRGLCV---------------DVSVYRALIRRFCKKEKVDYAQRLFNLMQG 506 (591)
Q Consensus 457 g~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 506 (591)
|++++|...++++.+..... ....+..+..++...|++++|...|+++.+
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555555555555432210 013444444444455555555555554444
No 127
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.80 E-value=7.1e-09 Score=98.43 Aligned_cols=162 Identities=9% Similarity=-0.088 Sum_probs=119.6
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCch---HHHHHHHhhcCCCCCccc
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTP---SVLNALVKIHDDPDGNSH 131 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 131 (591)
+++++|+..|+.+.+..|. ...++..++..+.+.|++++|+..|+++....+.... ...... .+....
T Consensus 127 ~~~~~A~~~~~~a~~~~p~---~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~------~~~~~~ 197 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLE---QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKA------QALRLA 197 (336)
T ss_dssp EEEECCCCGGGCCHHHHHH---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHH------HHHHHH
T ss_pred eecccccchhcCCHHHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHH------HHHHHH
Confidence 5667777777777665554 6778889999999999999999999999987643310 000000 000135
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACC 211 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 211 (591)
++..++.+|.+.|++++|+..|+++++.++. +..++..+..++...|++++|+..|+++.+..+. +...+..+..++.
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 6777888888888888888888888887655 7788888888888888888888888888887654 6677777888888
Q ss_pred ccCChhhH-HHHHHHHh
Q 048533 212 KSSDVDKV-EKLLCEME 227 (591)
Q Consensus 212 ~~g~~~~a-~~~~~~~~ 227 (591)
+.|+.++| ...++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888777 44555554
No 128
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.80 E-value=1.4e-06 Score=80.74 Aligned_cols=136 Identities=8% Similarity=-0.031 Sum_probs=88.9
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCC----------chHHHHHHHHHHHcCCCCchHHHHHHHhhcC
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKH----------FKSAQNMLEKIALRDFLSTPSVLNALVKIHD 124 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (591)
.-.++|++.+..++..+|. ...+++.-..++...|. +++++.+++.+...+
T Consensus 44 e~s~eaL~~t~~~L~~nP~---~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~---------------- 104 (331)
T 3dss_A 44 ELDESVLELTSQILGANPD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN---------------- 104 (331)
T ss_dssp CCSHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred CCCHHHHHHHHHHHHHCch---hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC----------------
Confidence 4445889999999988887 66666654444444333 566667776666654
Q ss_pred CCCCccchHHHHHHHHHhcC--ChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHH
Q 048533 125 DPDGNSHVLSWLVIFYANLK--MTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRL-TDMVWKVYKKMVQLGVVANIH 201 (591)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~ 201 (591)
|.+..+++.-..++.+.+ .+++++.+++++.+.+++ |..+|+.-.-.+...|. ++.+++.++.+.+.++. |..
T Consensus 105 --PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~S 180 (331)
T 3dss_A 105 --PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYS 180 (331)
T ss_dssp --TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHH
T ss_pred --CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHH
Confidence 334445555555555555 367777777777777766 77777777777777776 47777777777776655 666
Q ss_pred HHHHHHHHHHcc
Q 048533 202 LYNVLIHACCKS 213 (591)
Q Consensus 202 ~~~~ll~~~~~~ 213 (591)
.|+.....+.+.
T Consensus 181 AW~~R~~ll~~l 192 (331)
T 3dss_A 181 SWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666655554443
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.77 E-value=1.5e-08 Score=93.53 Aligned_cols=193 Identities=11% Similarity=0.009 Sum_probs=91.8
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+...+..++..+.+.|++++|+..|+++.... +.+..++..++.+|.+.|++++|+..++++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 64 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN------------------PLVAVYYTNRALCYLKMQQPEQALADCRRA 64 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34455555666666666666666666655543 223344555555666666666666666666
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcc
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLF 236 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 236 (591)
++.++. +..++..+..++...|++++|...|+...+.++. +...+...+....+. ..+... ........+.+..
T Consensus 65 l~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~ 138 (281)
T 2c2l_A 65 LELDGQ-SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESE 138 (281)
T ss_dssp TTSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCH
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHH
Confidence 655443 4555666666666666666666666655543221 000111111111110 111111 1111122233333
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc-CCHHHHHHHHHHhh
Q 048533 237 TYNTLIALYCKKGMHYEALAVQDRMEREGISPDIV-TYNSLIHGFCRE-GRMREARRLFRDIK 297 (591)
Q Consensus 237 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~-g~~~~A~~~~~~~~ 297 (591)
....+... ..|++++|++.+++..+. .|+.. ....+...+.+. +.+++|.++|....
T Consensus 139 i~~~l~~l--~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 139 LHSYLTRL--IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp HHHHHHHH--HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHH--HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333222 256667777766666554 33332 223333333333 55677777777664
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.77 E-value=1.5e-07 Score=78.96 Aligned_cols=121 Identities=10% Similarity=-0.067 Sum_probs=59.1
Q ss_pred HhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCC
Q 048533 48 LNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPD 127 (591)
Q Consensus 48 ~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (591)
+..+...|+++.|+..|+.+.+..|. +..++..++.++...|++++|+..++++...+ +
T Consensus 20 a~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------------------~ 78 (166)
T 1a17_A 20 ANDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELD------------------K 78 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------T
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------c
Confidence 33334445555555555555555444 45555555555555555555555555555432 2
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHH--HHHHHHHhcCChhHHHHHHHH
Q 048533 128 GNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACT--VLLNSLAKDRLTDMVWKVYKK 190 (591)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~ 190 (591)
.+..++..++.+|...|++++|+..|+++.+.++. +...+. ..+..+...|++++|+..+..
T Consensus 79 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 79 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 22334444555555555555555555555554332 222332 222223444444554444443
No 131
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.76 E-value=1.9e-06 Score=80.10 Aligned_cols=163 Identities=9% Similarity=-0.016 Sum_probs=119.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCC-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 048533 379 LINAYCKIGDTASAMKVKNRMLEAGLM-LDQ----FTYKALIHGFCKAKEMDIAKELLFGMLDAGFS-PS----YCSYSW 448 (591)
Q Consensus 379 li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 448 (591)
.+..+...|++++|..++++..+.... |+. ..+..+...+...|++++|...++++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 456677888888888888888764321 121 12334666667778999999999998873222 22 336888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCcC-HHHHH
Q 048533 449 LVDGYCNKNNEEALLKLLDEFVSR-----GLC-VDVSVYRALIRRFCKKEKVDYAQRLFNLMQGN----GILGD-SVIYT 517 (591)
Q Consensus 449 l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~ 517 (591)
+...|...|++++|...++++.+. +.. ....++..+...|...|++++|...+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 889999999999999999988841 111 12347888999999999999999999988752 22222 57888
Q ss_pred HHHHHHHHcCC-hhHHHHHHHHHHH
Q 048533 518 SLAYAYWRAGE-PKACSDILDDMYR 541 (591)
Q Consensus 518 ~l~~~~~~~g~-~~~A~~~~~~~~~ 541 (591)
.+..+|.+.|+ +++|.+.++++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 5999999998876
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.76 E-value=4e-08 Score=90.66 Aligned_cols=194 Identities=7% Similarity=-0.080 Sum_probs=127.8
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 130 SHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHA 209 (591)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 209 (591)
...+..++..+.+.|++++|+..|+++++.++. +...+..+..++.+.|++++|+..++...+..+. +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 455667788888999999999999998887655 7788888889999999999999999998887654 67788888888
Q ss_pred HHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048533 210 CCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREA 289 (591)
Q Consensus 210 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 289 (591)
+...|++++|...|++....+. .+...+...+....+.. .+ ..+..........+......+... ..|++++|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAK-EQRLNFGDDIPSALRIA---KK-KRWNSIEERRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHH-HTTCCCCSHHHHHHHHH---HH-HHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHHH---HH-HHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 9999999999998888766431 11112222222222111 11 112222233334444444433332 26888889
Q ss_pred HHHHHHhhcCCCChhhH-HHHHHHHHhc-CCHHHHHHHHHHHHHC
Q 048533 290 RRLFRDIKGATPNHVTY-TTLIDGYCRA-NDLEEALRLREVMAAK 332 (591)
Q Consensus 290 ~~~~~~~~~~~~~~~~~-~~li~~~~~~-g~~~~a~~~~~~~~~~ 332 (591)
.+.++...+..|+.... ..+...+.+. +.+++|.++|..+.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 98888887767764433 3333334444 6678888888877653
No 133
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.75 E-value=3.3e-08 Score=80.66 Aligned_cols=99 Identities=10% Similarity=0.037 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+...+..++..+.+.|++++|+..|+++...+ |.+..++..++.+|.+.|++++|+..|+++
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 78 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD------------------HYDARYFLGLGACRQSLGLYEQALQSYSYG 78 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC------------------CccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34444445555555555555555555554433 223334444455555555555555555555
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQL 194 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 194 (591)
.+.++. +...+..+..++...|++++|...|+...+.
T Consensus 79 l~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 79 ALMDIN-EPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 554433 3444445555555555555555555554443
No 134
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.74 E-value=2.7e-07 Score=77.35 Aligned_cols=129 Identities=9% Similarity=-0.080 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
...+..++..+...|++++|...|+++.... +.+..++..++.+|...|++++|+..+++..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 74 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN------------------PSNAIYYGNRSLAYLRTECYGYALGDATRAI 74 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445667777778888888888887777654 2334566667777777788888888887777
Q ss_pred hCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCChhhHHHHHHHH
Q 048533 158 VHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYN--VLIHACCKSSDVDKVEKLLCEM 226 (591)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~~ 226 (591)
+.++. +..++..+..++...|++++|...|+++.+..+. +...+. .....+.+.|++++|...+...
T Consensus 75 ~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 75 ELDKK-YIKGYYRRAASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 76543 5667777777777777777777777777766443 333442 2333355667777777666654
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.73 E-value=6.1e-08 Score=87.07 Aligned_cols=201 Identities=7% Similarity=-0.130 Sum_probs=127.7
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHH-------HHHHHhcCChHHHHHH
Q 048533 80 SHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWL-------VIFYANLKMTQDGLQV 152 (591)
Q Consensus 80 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~ 152 (591)
..+..+..+ ..+++..|.+.|.++...++. ..+.+.-+ ...+.+.++..+++..
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~------------------~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~ 69 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNYDES------------------ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQ 69 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTT------------------CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTH
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHhChh------------------hhHHHHhHHHccCCcHHHHHHHHHHHHHHHH
Confidence 344455555 689999999999999997743 34444444 3455555556667666
Q ss_pred HHHHhhCCCc-----cC---------------HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 048533 153 FDQMRVHNLM-----PH---------------LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCK 212 (591)
Q Consensus 153 ~~~~~~~~~~-----~~---------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 212 (591)
+.+..+..+. -+ ......+...+...|++++|.++|+.+...++ +....-.+...+.+
T Consensus 70 ~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p--~~~~~~~~a~l~~~ 147 (282)
T 4f3v_A 70 LSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS--EHLVAWMKAVVYGA 147 (282)
T ss_dssp HHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC--HHHHHHHHHHHHHH
T ss_pred HHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHH
Confidence 6666552110 00 22334556677778888888888877776543 22244445557777
Q ss_pred cCChhhHHHHHHHHhhCCCCcC--cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHH
Q 048533 213 SSDVDKVEKLLCEMEFKDVRAD--LFTYNTLIALYCKKGMHYEALAVQDRMEREGISPD--IVTYNSLIHGFCREGRMRE 288 (591)
Q Consensus 213 ~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~ 288 (591)
.+++++|+..|+...... .|. ...+..+..++...|++++|+..|++.......|. .........++.+.|+.++
T Consensus 148 ~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~de 226 (282)
T 4f3v_A 148 AERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESA 226 (282)
T ss_dssp TTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHH
T ss_pred cCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHH
Confidence 888888888887554431 111 23566677777778888888888877764432143 3355566677777788888
Q ss_pred HHHHHHHhhcCCCC
Q 048533 289 ARRLFRDIKGATPN 302 (591)
Q Consensus 289 A~~~~~~~~~~~~~ 302 (591)
|..+|+++....|+
T Consensus 227 A~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 227 AVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhcCCc
Confidence 88888777765565
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.72 E-value=2.8e-07 Score=73.84 Aligned_cols=111 Identities=11% Similarity=-0.091 Sum_probs=61.8
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcC
Q 048533 45 KVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHD 124 (591)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (591)
..++..+...|++++|+..|+.+.+..|. +..++..++.++...|++++|+..++++.+..
T Consensus 20 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---------------- 80 (133)
T 2lni_A 20 KNKGNECFQKGDYPQAMKHYTEAIKRNPK---DAKLYSNRAACYTKLLEFQLALKDCEECIQLE---------------- 80 (133)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHTTCTT---CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----------------
Confidence 33444444556666666666666655544 55566666666666666666666666665543
Q ss_pred CCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHh
Q 048533 125 DPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAK 177 (591)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 177 (591)
+.+..++..++.+|.+.|++++|++.|++..+.++. +...+..+..++..
T Consensus 81 --~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 81 --PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMA 130 (133)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHH
T ss_pred --CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHH
Confidence 223344555555666666666666666666555433 33344444444433
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.72 E-value=2e-07 Score=74.67 Aligned_cols=120 Identities=11% Similarity=-0.010 Sum_probs=79.8
Q ss_pred CCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHH
Q 048533 75 KHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFD 154 (591)
Q Consensus 75 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 154 (591)
+.+..++..++..+.+.|++++|+..++++.... +.+..++..++..|...|++++|++.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~ 74 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN------------------PKDAKLYSNRAACYTKLLEFQLALKDCE 74 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC------------------TTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------CCcHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3356667777888888888888888887777643 2334566667777777777777777777
Q ss_pred HHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 048533 155 QMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSS 214 (591)
Q Consensus 155 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 214 (591)
++.+..+. +...+..+..++...|++++|.+.|++..+.... +...+..+..++.+.|
T Consensus 75 ~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 75 ECIQLEPT-FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHhCCC-chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 77776543 5666777777777777777777777777665433 3344444555544433
No 138
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.72 E-value=9.6e-08 Score=77.85 Aligned_cols=110 Identities=9% Similarity=-0.202 Sum_probs=90.6
Q ss_pred CCCCCCCCChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC
Q 048533 31 NPNIASSLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFL 110 (591)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 110 (591)
+..+...|+.......++..+...|++++|+..|+.+....|. +..++..++.++.+.|++++|+..|+++...+
T Consensus 8 ~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-- 82 (142)
T 2xcb_A 8 AMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY---DARYFLGLGACRQSLGLYEQALQSYSYGALMD-- 82 (142)
T ss_dssp -CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--
Confidence 3344444444444455566677779999999999999998887 88999999999999999999999999998865
Q ss_pred CchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 111 STPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
|.++.++..++.+|...|++++|++.|+++++.++
T Consensus 83 ----------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 83 ----------------INEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp ----------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45567788899999999999999999999988643
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.70 E-value=2e-07 Score=74.42 Aligned_cols=110 Identities=12% Similarity=-0.020 Sum_probs=51.5
Q ss_pred HhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCC
Q 048533 48 LNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPD 127 (591)
Q Consensus 48 ~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (591)
+..+...|+++.|+..|+.+.+..|. +..++..++.++...|++++|+..++++.... +
T Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------~ 77 (131)
T 2vyi_A 19 GNEQMKVENFEAAVHFYGKAIELNPA---NAVYFCNRAAAYSKLGNYAGAVQDCERAICID------------------P 77 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------T
T ss_pred HHHHHHccCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC------------------c
Confidence 33333445555555555555544443 44445555555555555555555555544432 1
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcC
Q 048533 128 GNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDR 179 (591)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 179 (591)
.+..++..++..|...|++++|+..|+++.+.++. +...+..+..++...|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 78 AYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLR 128 (131)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHh
Confidence 22233444444455555555555555555444332 3334444444444433
No 140
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.69 E-value=1.8e-06 Score=75.77 Aligned_cols=125 Identities=13% Similarity=0.008 Sum_probs=60.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048533 343 SILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAK 422 (591)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 422 (591)
.+...+...|++++|...|++.. .|+...+..+...+...|++++|...+++..... +.+...+..+..++...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 33444445555555555554442 2344455555555555555555555555554442 223444555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 423 EMDIAKELLFGMLDAGFSP---------------SYCSYSWLVDGYCNKNNEEALLKLLDEFVSR 472 (591)
Q Consensus 423 ~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 472 (591)
++++|...++++.+..... ....+..+..+|...|++++|...++.+.+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 5555555555555432110 0134444555555555555555555555544
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.69 E-value=1.7e-07 Score=79.68 Aligned_cols=123 Identities=11% Similarity=0.041 Sum_probs=92.7
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHh
Q 048533 88 LTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHA 167 (591)
Q Consensus 88 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 167 (591)
+...|++++|+..++++...+ +.+..++..++..|...|++++|+..|+++.+.++. +...
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~------------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 80 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN------------------PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAEL 80 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC------------------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHH
T ss_pred hhhccCHHHHHHHHHHHHHhC------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHH
Confidence 346688888888888887754 344567777888888889999999999888887654 6677
Q ss_pred HHHHHHH-HHhcCCh--hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCC
Q 048533 168 CTVLLNS-LAKDRLT--DMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKD 230 (591)
Q Consensus 168 ~~~ll~~-~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 230 (591)
+..+..+ +...|++ +.|...++.+.+..+. +...+..+...+...|++++|...+++.....
T Consensus 81 ~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 81 YAALATVLYYQASQHMTAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 7777777 6788887 8888888888887654 56777778888888888888888888887764
No 142
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.68 E-value=4.7e-06 Score=77.34 Aligned_cols=167 Identities=9% Similarity=-0.029 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 048533 375 TCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQ-----FTYKALIHGFCKAKEMDIAKELLFGMLDAGF---SPS--YC 444 (591)
Q Consensus 375 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~ 444 (591)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445666777888888888888877765322111 2234455667788899999999998875321 122 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCcC-H
Q 048533 445 SYSWLVDGYCNKNNEEALLKLLDEFVS---RGLC-V--DVSVYRALIRRFCKKEKVDYAQRLFNLMQGN----GILGD-S 513 (591)
Q Consensus 445 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~-~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~ 513 (591)
+++.+...|...|++++|...++++.+ .... + ...++..+..+|...|++++|...+++..+. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788889999999999999999998873 2111 1 1258889999999999999999999988753 11111 5
Q ss_pred HHHHHHHHHHHHcCChhHH-HHHHHHHHH
Q 048533 514 VIYTSLAYAYWRAGEPKAC-SDILDDMYR 541 (591)
Q Consensus 514 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 541 (591)
.+|..+..+|.+.|++++| ...++++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7788999999999999999 777888765
No 143
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.68 E-value=6.3e-07 Score=70.71 Aligned_cols=113 Identities=16% Similarity=0.082 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
..++..++..+...|++++|...++++.... +.+..++..++..|...|++++|+..++++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 70 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD------------------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------------------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4556667777777777777777777776543 2233455666667777777777777777776
Q ss_pred hCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048533 158 VHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHAC 210 (591)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 210 (591)
+.++. +..++..+...+...|+++.|...++++.+..+. +...+..+...+
T Consensus 71 ~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 121 (125)
T 1na0_A 71 ELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK 121 (125)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 65443 5566666677777777777777777776665433 344444444433
No 144
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.67 E-value=5.5e-07 Score=71.75 Aligned_cols=120 Identities=16% Similarity=0.006 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+..++..++..+...|++++|+..++++.... +.+..++..++..|...|++++|+..+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 72 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN------------------PANAVYFCNRAAAYSKLGNYAGAVQDCERA 72 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC------------------CCCHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 34556667777777777777777777776643 223445666667777777777777777777
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDV 216 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 216 (591)
.+..+. +...+..+...+...|+++.|...|+...+..+. +...+..+..++.+.|++
T Consensus 73 ~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 73 ICIDPA-YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HhcCcc-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 766443 5666666777777777777777777777665443 455555566666555543
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.67 E-value=1.6e-07 Score=89.04 Aligned_cols=134 Identities=18% Similarity=-0.013 Sum_probs=112.3
Q ss_pred HHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCC------------CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcC
Q 048533 41 TAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKH------------SLQSHWTMIHILTKNKHFKSAQNMLEKIALRD 108 (591)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 108 (591)
......++..+...|++++|+..|+.+++..|..+. ...++..++.++.+.|++++|+..+++++..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 345566777777889999999999999998887210 05788999999999999999999999999865
Q ss_pred CCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHH-HHH
Q 048533 109 FLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMV-WKV 187 (591)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a-~~~ 187 (591)
|.+..++..++.+|...|++++|+..|+++++.++. +..++..+..++.+.|+.++| ...
T Consensus 227 ------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~ 287 (336)
T 1p5q_A 227 ------------------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKL 287 (336)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888999999999999999999999998765 788899999999999999888 456
Q ss_pred HHHHHH
Q 048533 188 YKKMVQ 193 (591)
Q Consensus 188 ~~~~~~ 193 (591)
|..|..
T Consensus 288 ~~~~~~ 293 (336)
T 1p5q_A 288 YANMFE 293 (336)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666643
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.67 E-value=2.5e-07 Score=73.49 Aligned_cols=93 Identities=13% Similarity=-0.014 Sum_probs=62.2
Q ss_pred HHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCC
Q 048533 47 LLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDP 126 (591)
Q Consensus 47 l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (591)
++..+...|++++|+..|+.+++..|. +..++..++.++.+.|++++|+..++++...+
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------------------ 68 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEMIKRAPE---DARGYSNRAAALAKLMSFPEAIADCNKAIEKD------------------ 68 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------------------
Confidence 344445557777777777777776665 66667777777777777777777777776654
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 127 DGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
|.+..++..++.+|...|++++|+..|+++.+.+
T Consensus 69 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 69 PNFVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 3344556666677777777777777777766654
No 147
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.67 E-value=5.9e-06 Score=76.52 Aligned_cols=172 Identities=6% Similarity=-0.048 Sum_probs=119.8
Q ss_pred HHHcCCCch-HHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCC----------hHHHHHHHHH
Q 048533 87 ILTKNKHFK-SAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKM----------TQDGLQVFDQ 155 (591)
Q Consensus 87 ~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~ 155 (591)
...+.|.+. +|+.+++.++..+|... .+++.-..+....+. +++++.+++.
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~nP~~y------------------taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~ 99 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGANPDFA------------------TLWNCRREVLQHLETEKSPEESAALVKAELGFLES 99 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTCTTCH------------------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhH------------------HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHH
Confidence 344566666 78999999988775432 333333222222222 6789999999
Q ss_pred HhhCCCccCHHhHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-hhhHHHHHHHHhhCCCC
Q 048533 156 MRVHNLMPHLHACTVLLNSLAKDR--LTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSD-VDKVEKLLCEMEFKDVR 232 (591)
Q Consensus 156 ~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~ 232 (591)
++..+++ +..+|+.-.-.+...+ .++.++.+++.+.+..+. |..+|+.-.-++...|. ++++++.+++++..+ +
T Consensus 100 ~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p 176 (331)
T 3dss_A 100 CLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-F 176 (331)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-S
T ss_pred HHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-C
Confidence 9998877 8889988888888877 478999999999988776 88888887777778887 588999999988875 4
Q ss_pred cCcccHHHHHHHHHhc--------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048533 233 ADLFTYNTLIALYCKK--------------GMHYEALAVQDRMEREGISPDIVTYNSLIHGF 280 (591)
Q Consensus 233 ~~~~~~~~li~~~~~~--------------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 280 (591)
.|..+|+.....+... +.++++++.+.+.....+. |..+|+-+-..+
T Consensus 177 ~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll 237 (331)
T 3dss_A 177 SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLL 237 (331)
T ss_dssp CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 5777888777666655 3355666666666654322 555555443333
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.66 E-value=2.8e-07 Score=75.57 Aligned_cols=104 Identities=6% Similarity=-0.232 Sum_probs=88.4
Q ss_pred CCChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHH
Q 048533 37 SLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVL 116 (591)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 116 (591)
.|........++..+...|++++|+..|+.+....|. +..++..++.++...|++++|+..|+++...+
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-------- 85 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY---DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-------- 85 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--------
Confidence 3434444455666777789999999999999998887 88999999999999999999999999998865
Q ss_pred HHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 117 NALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
|.++.++..++.+|...|++++|+..|++.++..+
T Consensus 86 ----------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 86 ----------IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp ----------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ----------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 45667788899999999999999999999988643
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.65 E-value=5.6e-07 Score=71.02 Aligned_cols=113 Identities=16% Similarity=0.037 Sum_probs=73.3
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 130 SHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHA 209 (591)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 209 (591)
...+..++..|...|++++|++.|+++.+..+. +..++..+...+...|+++.|...++++.+..+. +..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 445666777777778888888887777766543 5666777777777777777777777777665433 55566666667
Q ss_pred HHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHH
Q 048533 210 CCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALY 245 (591)
Q Consensus 210 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 245 (591)
+...|++++|...++++.... +.+...+..+...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 777777777777777666543 22333444444433
No 150
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.64 E-value=1.5e-05 Score=73.97 Aligned_cols=92 Identities=8% Similarity=0.027 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcC------CCC-hh
Q 048533 238 YNTLIALYCKKGMHYEALAVQDRMER----E-GISPD-IVTYNSLIHGFCREGRMREARRLFRDIKGA------TPN-HV 304 (591)
Q Consensus 238 ~~~li~~~~~~g~~~~a~~~~~~~~~----~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~-~~ 304 (591)
++.+..+|...|++++|+..|++..+ . +..+. ..++..+...|...|++++|...+++.... .+. ..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 44444555555555555555554442 0 11111 124445555555555555555555544320 011 23
Q ss_pred hHHHHHHHHHhcC-CHHHHHHHHHHH
Q 048533 305 TYTTLIDGYCRAN-DLEEALRLREVM 329 (591)
Q Consensus 305 ~~~~li~~~~~~g-~~~~a~~~~~~~ 329 (591)
++..+..+|.+.| ++++|.+.+++.
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 4444444555555 235555444443
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.62 E-value=5.9e-08 Score=84.38 Aligned_cols=164 Identities=10% Similarity=-0.079 Sum_probs=103.6
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHH---HHHHHhhcCCCCCccc
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSV---LNALVKIHDDPDGNSH 131 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 131 (591)
|++++|.+.++......+. ....+..++..+.+.|++++|+..|+++....+...... ...... .....
T Consensus 18 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-----~~~~~ 89 (198)
T 2fbn_A 18 YFQGAKKSIYDYTDEEKVQ---SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKK-----NIEIS 89 (198)
T ss_dssp ----CCCSGGGCCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHH-----HHHHH
T ss_pred hhccccCchhhCCHHHHHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHH-----HHHHH
Confidence 5566666666544332222 455677889999999999999999999987543221000 000000 00025
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACC 211 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 211 (591)
++..++.+|.+.|++++|+..++++++.++. +..++..+..++...|+++.|+..|+...+..+. +...+..+..++.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHH
Confidence 6777888888899999999999888887654 6778888888888888888888888888877544 5667777777777
Q ss_pred ccCChhhHH-HHHHHHhh
Q 048533 212 KSSDVDKVE-KLLCEMEF 228 (591)
Q Consensus 212 ~~g~~~~a~-~~~~~~~~ 228 (591)
..++.+++. ..+..+..
T Consensus 168 ~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 168 KLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 766666665 44444443
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.62 E-value=4.5e-07 Score=72.01 Aligned_cols=100 Identities=6% Similarity=-0.071 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+...+..++..+.+.|++++|+..|+++...+ |.+..++..++.+|.+.|++++|+..++++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 64 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA------------------PEDARGYSNRAAALAKLMSFPEAIADCNKA 64 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------------------CCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34566778888888888888888888887754 344567777888888888888888888888
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLG 195 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 195 (591)
++.++. +..++..+..++...|++++|...|++..+..
T Consensus 65 l~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 65 IEKDPN-FVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCCC-cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 887655 67778888888888888888888888887754
No 153
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.62 E-value=1.2e-06 Score=81.38 Aligned_cols=173 Identities=8% Similarity=-0.034 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
...+...+..+...|++++|.+.+++..+........ .... ..+..++..|...|++++|+..++++.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~--~~~~----------~~~~~~~~~~~~~~~~~~A~~~~~~al 142 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEF--QQFL----------QWQYYVAAYVLKKVDYEYCILELKKLL 142 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHH--HHHH----------HHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhH--HHHH----------HHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4445567888899999999999999887754332111 1111 224456677888889999999998887
Q ss_pred hCCCc---cC--HHhHHHHHHHHHhcCChhHHHHHHHHHHH---CCCC-C--CHHHHHHHHHHHHccCChhhHHHHHHHH
Q 048533 158 VHNLM---PH--LHACTVLLNSLAKDRLTDMVWKVYKKMVQ---LGVV-A--NIHLYNVLIHACCKSSDVDKVEKLLCEM 226 (591)
Q Consensus 158 ~~~~~---~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~-~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 226 (591)
+.... +. ..+++.+...|...|++++|+..|+++.+ .... + ...++..+...|.+.|++++|...+++.
T Consensus 143 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka 222 (293)
T 2qfc_A 143 NQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp TTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 64221 11 44778888888888888888888888763 2111 1 1146677777778888888888877776
Q ss_pred hhCC----CCc-CcccHHHHHHHHHhcCChhHH-HHHHHHHH
Q 048533 227 EFKD----VRA-DLFTYNTLIALYCKKGMHYEA-LAVQDRME 262 (591)
Q Consensus 227 ~~~~----~~~-~~~~~~~li~~~~~~g~~~~a-~~~~~~~~ 262 (591)
.... ... -..+|..+..++...|++++| ...+++..
T Consensus 223 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5431 000 134566667777777777777 55565543
No 154
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.60 E-value=3.5e-07 Score=79.69 Aligned_cols=156 Identities=12% Similarity=-0.017 Sum_probs=86.0
Q ss_pred HcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhC----CC-cc
Q 048533 89 TKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVH----NL-MP 163 (591)
Q Consensus 89 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~ 163 (591)
...|++++|.+.++.+.. ++.....++..++..|...|++++|+..+++..+. +. ..
T Consensus 3 ~~~g~~~~A~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 64 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA------------------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA 64 (203)
T ss_dssp ----CHHHHHHHHHHHHT------------------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred cccccHHHHHHHHHHhcC------------------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHH
Confidence 456788888875544432 12234456777777888888888888888877662 11 11
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHccCChhhHHHHHHHHhhC----CCC-
Q 048533 164 HLHACTVLLNSLAKDRLTDMVWKVYKKMVQL----GVVA--NIHLYNVLIHACCKSSDVDKVEKLLCEMEFK----DVR- 232 (591)
Q Consensus 164 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~- 232 (591)
...++..+...+...|++++|...+++..+. +..+ ....+..+...+...|++++|...+++.... +.+
T Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 144 (203)
T 3gw4_A 65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQV 144 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchH
Confidence 3445666677777777777777777766543 1011 1234555566666666666666666665421 100
Q ss_pred cCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 048533 233 ADLFTYNTLIALYCKKGMHYEALAVQDRME 262 (591)
Q Consensus 233 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 262 (591)
.-..++..+..++...|++++|.+.+++..
T Consensus 145 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 145 AIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 001123445555555555555555555443
No 155
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.59 E-value=8.3e-07 Score=77.23 Aligned_cols=156 Identities=8% Similarity=-0.156 Sum_probs=86.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCCHH
Q 048533 386 IGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLD----AGFS-PSYCSYSWLVDGYCNKNNEE 460 (591)
Q Consensus 386 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~ 460 (591)
.|++++|.+.++.+.. ........+..+...+...|++++|...+++.++ .+.. ....++..+...+...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4555555553333322 1112344555555555556666666665555543 1111 12344555666666777777
Q ss_pred HHHHHHHHHHHC----CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCc-CHHHHHHHHHHHHHcCCh
Q 048533 461 ALLKLLDEFVSR----GLC--VDVSVYRALIRRFCKKEKVDYAQRLFNLMQGN----GILG-DSVIYTSLAYAYWRAGEP 529 (591)
Q Consensus 461 ~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~ 529 (591)
+|...+++..+. +-. ....++..+...+...|++++|...+++..+. +-.. -..++..+..++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 777777666543 101 12345666777777778888887777776532 1111 123456777778888888
Q ss_pred hHHHHHHHHHHHC
Q 048533 530 KACSDILDDMYRR 542 (591)
Q Consensus 530 ~~A~~~~~~~~~~ 542 (591)
++|.+.+++..+.
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777653
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.57 E-value=6e-07 Score=71.31 Aligned_cols=105 Identities=11% Similarity=-0.055 Sum_probs=83.3
Q ss_pred HHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHh
Q 048533 42 AIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVK 121 (591)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 121 (591)
....-|+..+.+.|++++|+..|+.+++..|. +..++..++.++.+.|++++|+..++++++.++......
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~---~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------ 79 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS---NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADY------ 79 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhh------
Confidence 34456788888889999999999999999887 889999999999999999999999999887543211100
Q ss_pred hcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 122 IHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 122 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
.....++..++.+|...|++++|++.|++.++..
T Consensus 80 -----~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 80 -----KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp -----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred -----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 0012356778888999999999999999988754
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.55 E-value=8e-07 Score=74.37 Aligned_cols=97 Identities=12% Similarity=-0.036 Sum_probs=57.9
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKI 122 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (591)
....++..+...|++++|+..|+.+++..|. +..++..++.++.+.|++++|+..|+++...+
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------- 75 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPA---NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-------------- 75 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------------
Confidence 3344445555556666666666666666555 55666666666666666666666666666543
Q ss_pred cCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 123 HDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 123 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
+.+..++..++.+|...|++++|+..|+++++.+
T Consensus 76 ----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 76 ----PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 2334455556666666666666666666665543
No 158
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.54 E-value=2.6e-07 Score=72.65 Aligned_cols=88 Identities=11% Similarity=-0.019 Sum_probs=63.5
Q ss_pred cCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccc
Q 048533 52 NCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSH 131 (591)
Q Consensus 52 ~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (591)
...|++++|+..|+.+++..|+ +..++..++.++...|++++|+..|+++.+.+ |.+..
T Consensus 28 ~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~------------------P~~~~ 86 (121)
T 1hxi_A 28 LKLANLAEAALAFEAVCQKEPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLD------------------PKDIA 86 (121)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCCHH
Confidence 3457788888888888777776 67777778888888888888888887777754 33445
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
++..++.+|...|++++|+..|+++++.+
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 87 VHAALAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 66667777777777778877777777654
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.54 E-value=2.4e-06 Score=66.50 Aligned_cols=108 Identities=10% Similarity=-0.117 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
...+..++..+...|++++|...++++.... +.+..++..++..|...|++++|+..++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 65 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD------------------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 65 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC------------------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4556677777777788888877777776643 2334556666777777777777777777777
Q ss_pred hCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 158 VHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNV 205 (591)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 205 (591)
+.++. +...+..+..++...|+++.|...++...+.++. +...+..
T Consensus 66 ~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 111 (118)
T 1elw_A 66 DLKPD-WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN-NPQLKEG 111 (118)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHH
T ss_pred HhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHH
Confidence 76543 5666777777777777777777777777765443 3334333
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.53 E-value=1.7e-06 Score=68.61 Aligned_cols=106 Identities=8% Similarity=0.069 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CcC----HHHHHH
Q 048533 445 SYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGI--LGD----SVIYTS 518 (591)
Q Consensus 445 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~----~~~~~~ 518 (591)
.+..++..+.+.|++++|+..|+++++..+. +...|..+..+|...|++++|+..+++.++.+. .++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4556677777777777777777777776543 677777777777778888888877777765311 111 135666
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 519 LAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRS 553 (591)
Q Consensus 519 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 553 (591)
+..++...|++++|++.|++.++. .|++.....
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 777788888888888888887774 355554443
No 161
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.53 E-value=2.2e-06 Score=66.72 Aligned_cols=107 Identities=11% Similarity=-0.107 Sum_probs=88.1
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcC
Q 048533 45 KVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHD 124 (591)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (591)
..++..+...|++++|+..|+.+....|. +..++..++.++...|++++|...++++....
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------------- 68 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDPH---NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK---------------- 68 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC----------------
Confidence 34455556679999999999999998876 78889999999999999999999999998764
Q ss_pred CCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHH
Q 048533 125 DPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLN 173 (591)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 173 (591)
+.+..++..++.+|...|++++|.+.+++..+.++. +...+..+..
T Consensus 69 --~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 114 (118)
T 1elw_A 69 --PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQN 114 (118)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHH
T ss_pred --cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 334567888899999999999999999999987654 5555554443
No 162
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.51 E-value=5.2e-07 Score=89.85 Aligned_cols=120 Identities=9% Similarity=-0.070 Sum_probs=96.0
Q ss_pred HhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCC
Q 048533 48 LNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPD 127 (591)
Q Consensus 48 ~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (591)
+..+...|++++|+..|+.+++..|. +..++..++.++.+.|++++|+..++++.+.+ +
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------------------p 71 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELD------------------K 71 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC------------------T
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------------------C
Confidence 44556679999999999999998887 78899999999999999999999999998864 4
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHH--HHhcCChhHHHHHHH
Q 048533 128 GNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNS--LAKDRLTDMVWKVYK 189 (591)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~ 189 (591)
.+..++..++.+|.+.|++++|++.|+++.+.++. +..++..+..+ +.+.|++++|++.++
T Consensus 72 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 72 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 45667888899999999999999999999887654 44556656555 778899999999888
No 163
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.51 E-value=1.5e-06 Score=69.16 Aligned_cols=97 Identities=11% Similarity=-0.052 Sum_probs=68.1
Q ss_pred hhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCc
Q 048533 50 LYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGN 129 (591)
Q Consensus 50 ~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (591)
.+...|++++|+..|+.+.+..|+.+....+++.++.++.+.|++++|+..|+++....+.. +..
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~ 75 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH---------------DKA 75 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS---------------TTH
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC---------------ccc
Confidence 33445788888888888887777633333677778888888888888888888877754321 111
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 130 SHVLSWLVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
+.++..++.+|...|++++|+..|+++.+..+
T Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 44566777778888888888888888777643
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.50 E-value=8.7e-07 Score=68.32 Aligned_cols=53 Identities=11% Similarity=-0.026 Sum_probs=26.9
Q ss_pred hcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 048533 51 YNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIAL 106 (591)
Q Consensus 51 ~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 106 (591)
+...|++++|+..|+.+.+..|. +..++..++.++...|++++|+..++++.+
T Consensus 16 ~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 68 (112)
T 2kck_A 16 QYDAGNYTESIDLFEKAIQLDPE---ESKYWLMKGKALYNLERYEEAVDCYNYVIN 68 (112)
T ss_dssp HHSSCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33345555555555555554443 444455555555555555555555555544
No 165
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.49 E-value=7.9e-07 Score=77.15 Aligned_cols=131 Identities=13% Similarity=0.008 Sum_probs=99.1
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCC--C-----------HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC
Q 048533 44 HKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKH--S-----------LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFL 110 (591)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~--~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 110 (591)
...++..+...|++++|+..|+.+++..|..+. . ..++..++.++.+.|++++|+..++++....
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-- 118 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-- 118 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--
Confidence 445566667789999999999999987776221 0 2778899999999999999999999998864
Q ss_pred CchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHH-HHHH
Q 048533 111 STPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVW-KVYK 189 (591)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~ 189 (591)
+.+..++..++.+|...|++++|+..|++..+.++. +..++..+..++...++.+++. ..+.
T Consensus 119 ----------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~ 181 (198)
T 2fbn_A 119 ----------------KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFG 181 (198)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC-------
T ss_pred ----------------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667888999999999999999999999988665 6778888888887777666655 4455
Q ss_pred HHHH
Q 048533 190 KMVQ 193 (591)
Q Consensus 190 ~~~~ 193 (591)
.+..
T Consensus 182 ~~f~ 185 (198)
T 2fbn_A 182 GMFD 185 (198)
T ss_dssp ----
T ss_pred HHhc
Confidence 4443
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.48 E-value=1.8e-06 Score=72.21 Aligned_cols=102 Identities=11% Similarity=-0.066 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+...+..++..+.+.|++++|+..|+++...+ +.+..++..++.+|.+.|++++|+..|+++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 71 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA------------------PANPIYLSNRAAAYSASGQHEKAAEDAELA 71 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CcCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 45667788888899999999999998888765 345567778888888999999999999988
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV 197 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (591)
++.++. +...|..+..++...|++++|+..|++..+..+.
T Consensus 72 l~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 72 TVVDPK-YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 887765 6788888888888889999999888888876543
No 167
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.47 E-value=9.5e-07 Score=69.43 Aligned_cols=96 Identities=8% Similarity=0.020 Sum_probs=70.6
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 81 HWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 81 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
+..++..+.+.|++++|+..|+++.+.+ |.+..++..++.++...|++++|+..|+++++.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 81 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE------------------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4567777788888888888888877754 3445667777777888888888888888887776
Q ss_pred CccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048533 161 LMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLG 195 (591)
Q Consensus 161 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 195 (591)
+. +..++..+..++...|++++|+..+++..+..
T Consensus 82 P~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 82 PK-DIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp TT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 55 66677777777777888888888887777653
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.47 E-value=1.6e-07 Score=93.15 Aligned_cols=161 Identities=8% Similarity=-0.070 Sum_probs=107.8
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCch---HHHHHHHhhcCCCCCccc
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTP---SVLNALVKIHDDPDGNSH 131 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 131 (591)
+++++|+..|+.+.+..|. ....+..++..+.+.|++++|+..|+++....+.... ......- +....
T Consensus 248 ~~~~~A~~~~~~~~~~~~~---~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~------~~~~~ 318 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLE---QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASE------SFLLA 318 (457)
T ss_dssp EEEECCCCGGGSCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHH------HHHHH
T ss_pred hhcccCcchhhcCHHHHHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHH------HHHHH
Confidence 4566777777766655554 5677889999999999999999999999886533210 0000000 00135
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACC 211 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 211 (591)
++..++.+|.+.|++++|+..++++++.++. +..+|..+..++...|++++|+..|+++.+..+. +...+..+..++.
T Consensus 319 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 319 AFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 6667777788888888888888888777654 6777777777888888888888888887776543 4556666777777
Q ss_pred ccCChhhHHH-HHHHH
Q 048533 212 KSSDVDKVEK-LLCEM 226 (591)
Q Consensus 212 ~~g~~~~a~~-~~~~~ 226 (591)
+.++.+++.+ .+..|
T Consensus 397 ~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 397 KAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7776666543 34444
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=3.6e-06 Score=68.71 Aligned_cols=100 Identities=12% Similarity=-0.026 Sum_probs=51.2
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKI 122 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (591)
....++..+...|++++|+..|+.+.+..|+.+....++..++.++...|++++|+..++++....
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------------- 95 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-------------- 95 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--------------
Confidence 333444444455666666666666655444300004445555555666666666666655555432
Q ss_pred cCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 123 HDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 123 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
+.+..++..++.+|...|++++|+..|++..+.+
T Consensus 96 ----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 96 ----GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp ----SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ----ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 2223344455555555555555555555555543
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=4.9e-06 Score=67.90 Aligned_cols=117 Identities=12% Similarity=-0.071 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHH
Q 048533 76 HSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQ 155 (591)
Q Consensus 76 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 155 (591)
.+...+..++..+...|++++|+..|+++....+.. . ....++..++..|...|++++|+..+++
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~--~-------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 90 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP--Q-------------DQAVLHRNRAACHLKLEDYDKAETEASK 90 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH--H-------------HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc--h-------------HHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 467888899999999999999999999998754321 0 0145677788889999999999999999
Q ss_pred HhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 156 MRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHA 209 (591)
Q Consensus 156 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 209 (591)
..+..+. +...+..+..++...|++++|...|++..+..+. +...+..+...
T Consensus 91 ~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 142 (148)
T 2dba_A 91 AIEKDGG-DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALRNI 142 (148)
T ss_dssp HHHHTSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHH
T ss_pred HHhhCcc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHH
Confidence 8887654 6778888888999999999999999998886543 44555444443
No 171
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.43 E-value=4.1e-07 Score=71.12 Aligned_cols=90 Identities=8% Similarity=0.086 Sum_probs=70.9
Q ss_pred CCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchH
Q 048533 54 CHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL 133 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (591)
.|++++|+..|+.+++..++.|.+..++..++.++...|++++|+..|+++.+.+ |.+..++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------------------p~~~~~~ 64 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF------------------PNHQALR 64 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCchHHH
Confidence 4789999999999998632222367888899999999999999999999998865 4456678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
..++.+|.+.|++++|+..|++.++..+
T Consensus 65 ~~l~~~~~~~g~~~~A~~~~~~al~~~p 92 (117)
T 3k9i_A 65 VFYAMVLYNLGRYEQGVELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 8888999999999999999999887644
No 172
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.43 E-value=3.7e-06 Score=67.64 Aligned_cols=99 Identities=11% Similarity=0.000 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+...+..++..+...|++++|+..|+++...+ +.+..++..++.+|...|++++|+..++++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN------------------PLVAVYYTNRALCYLKMQQPEQALADCRRA 69 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC------------------cCcHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 56667777777777777777777777776654 233455666677777777777777777777
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQL 194 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 194 (591)
.+.++. +...+..+..++...|+++.|+..|+.+.+.
T Consensus 70 l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 70 LELDGQ-SVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCch-hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 766544 5666677777777777777777777766654
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.41 E-value=6.2e-06 Score=65.51 Aligned_cols=100 Identities=12% Similarity=0.003 Sum_probs=74.5
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048533 80 SHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVH 159 (591)
Q Consensus 80 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 159 (591)
.++.++..+.+.|++++|+..|+.+....+.. +....++..++.+|.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~ 68 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNG---------------VYTPNALYWLGESYYATRNFQLAEAQFRDLVSR 68 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS---------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC---------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35667788888888888888888887754321 111246677788888888888888888888876
Q ss_pred CCccC---HHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048533 160 NLMPH---LHACTVLLNSLAKDRLTDMVWKVYKKMVQLG 195 (591)
Q Consensus 160 ~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 195 (591)
.+. + ..++..+..++...|+++.|...|+.+.+..
T Consensus 69 ~p~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 69 YPT-HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp CTT-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCC-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 544 3 5667777888888888888888888887764
No 174
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.40 E-value=3.2e-06 Score=68.04 Aligned_cols=100 Identities=10% Similarity=-0.096 Sum_probs=86.1
Q ss_pred hHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHH
Q 048533 40 STAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNAL 119 (591)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (591)
.......++..+...|+++.|+..|+.+++..|. +..++..++.++...|++++|+..++++...+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----------- 73 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELD----------- 73 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----------
Confidence 3444455667777789999999999999998887 78899999999999999999999999998865
Q ss_pred HhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 120 VKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 120 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
+.+..++..++.+|...|++++|+..|+++.+..
T Consensus 74 -------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 74 -------GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHC
Confidence 3455678889999999999999999999998764
No 175
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.40 E-value=7.2e-06 Score=83.15 Aligned_cols=179 Identities=10% Similarity=-0.027 Sum_probs=129.7
Q ss_pred hhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCC----------chHHHHHHHHHHHcCCCCchHHHHH
Q 048533 49 NLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKH----------FKSAQNMLEKIALRDFLSTPSVLNA 118 (591)
Q Consensus 49 ~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~ 118 (591)
.........++|++.++.+++.+|. ...+|+.-..++...|+ +++++..++.+.+.+
T Consensus 37 ~~~~~~~~~eeal~~~~~~l~~nP~---~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~---------- 103 (567)
T 1dce_A 37 QKRQAGELDESVLELTSQILGANPD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN---------- 103 (567)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCch---hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC----------
Confidence 3344446677899999999999987 78888877777777777 888888888888765
Q ss_pred HHhhcCCCCCccchHHHHHHHHHhcC--ChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHHCC
Q 048533 119 LVKIHDDPDGNSHVLSWLVIFYANLK--MTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDR-LTDMVWKVYKKMVQLG 195 (591)
Q Consensus 119 ~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~ 195 (591)
|.+..+|..-..++.+.+ +++++++.++++.+.+++ +..+|+.-...+.+.| .++++++.++++.+.+
T Consensus 104 --------pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~ 174 (567)
T 1dce_A 104 --------PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 174 (567)
T ss_dssp --------TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred --------CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC
Confidence 344556666666777778 568889999988888877 8888888888888888 7888888888888877
Q ss_pred CCCCHHHHHHHHHHHHcc--------------CChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCCh
Q 048533 196 VVANIHLYNVLIHACCKS--------------SDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMH 251 (591)
Q Consensus 196 ~~~~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 251 (591)
+. +...|+.....+.+. +.++++.+.+++....+ +-|..+|+.+...+.+.++.
T Consensus 175 p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 175 FS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred CC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 66 777777766665553 33556666666665543 33555666655555555543
No 176
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.36 E-value=6.6e-06 Score=63.23 Aligned_cols=103 Identities=8% Similarity=-0.020 Sum_probs=81.8
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHH
Q 048533 127 DGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV-ANIHLYNV 205 (591)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 205 (591)
|.+..++..++..+...|++++|+..|+++.+..+. +..++..+..++...|++++|.+.+++..+.... .+...+..
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 345567777888888999999999999998887654 6778888888888888899998888888876432 14667777
Q ss_pred HHHHHHcc-CChhhHHHHHHHHhhCC
Q 048533 206 LIHACCKS-SDVDKVEKLLCEMEFKD 230 (591)
Q Consensus 206 ll~~~~~~-g~~~~a~~~~~~~~~~~ 230 (591)
+..++.+. |++++|.+.++......
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 88888888 88888888888887664
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.33 E-value=2.7e-06 Score=67.66 Aligned_cols=100 Identities=14% Similarity=0.021 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
..++..++..+...|++++|...++++.... +.+..++..++..|...|++++|+..++++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 65 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD------------------PTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------------------CccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4456667777777777777777777776643 2234556667777777777777777777776
Q ss_pred hCCCc--cC----HHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048533 158 VHNLM--PH----LHACTVLLNSLAKDRLTDMVWKVYKKMVQLG 195 (591)
Q Consensus 158 ~~~~~--~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 195 (591)
+..+. ++ ..++..+..++...|+++.|.+.|+.+.+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 66 EVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 65332 11 5566666777777777777777777776653
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.33 E-value=1.1e-05 Score=64.07 Aligned_cols=111 Identities=12% Similarity=0.124 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CcC----HHHHH
Q 048533 444 CSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGI--LGD----SVIYT 517 (591)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~----~~~~~ 517 (591)
..+..+...+...|+++.|...++++.+..+ .+...+..+...+...|++++|...++++.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3455566666667777777777777666533 2566666777777777777777777777665321 111 55666
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 048533 518 SLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSAS 557 (591)
Q Consensus 518 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 557 (591)
.+..++...|++++|...|+++.+.. |++.....+..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 77777777777777777777777753 355444444443
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.29 E-value=3.2e-06 Score=83.81 Aligned_cols=131 Identities=13% Similarity=-0.040 Sum_probs=104.6
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCC------------CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKH------------SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFL 110 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 110 (591)
....++..+.+.|+++.|+..|+.+++..|..+. ...+|..++.++.+.|++++|+..+++++..+
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-- 347 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-- 347 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--
Confidence 4455677777789999999999999998886210 05788899999999999999999999999865
Q ss_pred CchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHH-HHHH
Q 048533 111 STPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVW-KVYK 189 (591)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~ 189 (591)
+.+..++..++.+|...|++++|+..|+++++.++. +..++..+..++.+.++.+++. ..+.
T Consensus 348 ----------------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~ 410 (457)
T 1kt0_A 348 ----------------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYA 410 (457)
T ss_dssp ----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888999999999999999999999998765 6778888888888888877665 3444
Q ss_pred HHH
Q 048533 190 KMV 192 (591)
Q Consensus 190 ~~~ 192 (591)
.|.
T Consensus 411 ~~f 413 (457)
T 1kt0_A 411 NMF 413 (457)
T ss_dssp HC-
T ss_pred HHH
Confidence 443
No 180
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.29 E-value=2.5e-06 Score=80.87 Aligned_cols=146 Identities=8% Similarity=-0.072 Sum_probs=58.8
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKI 122 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (591)
....++..+...|++++|+..|+.+++..|. +.. +...|+++++...+.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~---~~~--------~~~~~~~~~~~~~l~-------------------- 229 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGD---DFM--------FQLYGKYQDMALAVK-------------------- 229 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCH---HHH--------HTCCHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc---chh--------hhhcccHHHHHHHHH--------------------
Confidence 3455667777778888888888888877664 220 111122222211110
Q ss_pred cCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 048533 123 HDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHL 202 (591)
Q Consensus 123 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 202 (591)
..++..++.+|.+.|++++|+..++++++.++. +..+|..+..++...|++++|+..|+++.+..+. +...
T Consensus 230 -------~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a 300 (338)
T 2if4_A 230 -------NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAI 300 (338)
T ss_dssp -------THHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------
T ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHH
Confidence 013444455555555555555555555554432 4455555555555555555555555555444322 2333
Q ss_pred HHHHHHH-HHccCChhhHHHHHHHHhh
Q 048533 203 YNVLIHA-CCKSSDVDKVEKLLCEMEF 228 (591)
Q Consensus 203 ~~~ll~~-~~~~g~~~~a~~~~~~~~~ 228 (591)
+..+... ....+..+.+...|.++..
T Consensus 301 ~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 301 RRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3333333 1223344455555555543
No 181
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.28 E-value=6.7e-05 Score=73.92 Aligned_cols=195 Identities=10% Similarity=-0.059 Sum_probs=114.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCccC----------------HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-
Q 048533 136 LVIFYANLKMTQDGLQVFDQMRVHNLMPH----------------LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVA- 198 (591)
Q Consensus 136 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~- 198 (591)
-+..+.+.|++++|++.|..+.+...... ..++..+...|...|++++|.+.+..+.+.-...
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 34557888999999999999988644321 1246777788888888888888887765431111
Q ss_pred CH----HHHHHHHHHHHccCChhhHHHHHHHHhhC----CCCc-CcccHHHHHHHHHhcCChhHHHHHHHHHHHC--CC-
Q 048533 199 NI----HLYNVLIHACCKSSDVDKVEKLLCEMEFK----DVRA-DLFTYNTLIALYCKKGMHYEALAVQDRMERE--GI- 266 (591)
Q Consensus 199 ~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~- 266 (591)
+. .+.+.+...+...|+++.|..+++..... +..+ -..++..+...+...|++++|..+++++... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 11 12222333344557777777777665431 1111 1335566677777777777777777765442 11
Q ss_pred -CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc----C-CC-C--hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048533 267 -SP-DIVTYNSLIHGFCREGRMREARRLFRDIKG----A-TP-N--HVTYTTLIDGYCRANDLEEALRLREVMA 330 (591)
Q Consensus 267 -~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-~~-~--~~~~~~li~~~~~~g~~~~a~~~~~~~~ 330 (591)
.+ ...++..++..|...|++++|..++++... . .| . ...+..+...+...|++++|...|.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11 134566667777777777777777766543 1 11 1 1234444555556666666666655543
No 182
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.26 E-value=4.6e-06 Score=67.44 Aligned_cols=102 Identities=10% Similarity=-0.021 Sum_probs=79.2
Q ss_pred HHhhhcCCCChhHHHHHHHHHhhhCCCCCC----CHH-----HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHH
Q 048533 47 LLNLYNCCHIPSLSCAFFKWAESAVPNYKH----SLQ-----SHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLN 117 (591)
Q Consensus 47 l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~----~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 117 (591)
.+....+.|++++|+..|+.+++..|+++. +.. +|..++.++.+.|++++|+..++++++. |+
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l--------~n 88 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY--------FN 88 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------hh
Confidence 344455569999999999999999887432 233 8889999999999999999999999875 00
Q ss_pred HHHhhcCCCCCccchH----HHHHHHHHhcCChHHHHHHHHHHhhC
Q 048533 118 ALVKIHDDPDGNSHVL----SWLVIFYANLKMTQDGLQVFDQMRVH 159 (591)
Q Consensus 118 ~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~ 159 (591)
... ...|++...| ...+.++...|++++|+..|++.++.
T Consensus 89 ~~~---e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 89 RRG---ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHC---CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccc---cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 000 1124455666 88899999999999999999998875
No 183
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=7.2e-05 Score=73.69 Aligned_cols=197 Identities=10% Similarity=-0.014 Sum_probs=98.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC
Q 048533 310 IDGYCRANDLEEALRLREVMAAKGVYPG----------------VVTYNSILRKLCKEGRIRDANRLLNEMNEKKIA-PD 372 (591)
Q Consensus 310 i~~~~~~g~~~~a~~~~~~~~~~~~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 372 (591)
...+.+.|++++|.+.|..+.+...... ...+..+...|...|++++|.+.+..+.+.-.. ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3455667777777777777776532211 012455666666666776666666655432101 11
Q ss_pred hH----HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--
Q 048533 373 NV----TCNTLINAYCKIGDTASAMKVKNRMLEA----GLMLD-QFTYKALIHGFCKAKEMDIAKELLFGMLDA--GF-- 439 (591)
Q Consensus 373 ~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-- 439 (591)
.. +.+.+...+...|+.+.+..+++..... +..+. ..++..+...+...|++++|..++.++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 1122222233345666666666554321 11111 334555566666666666666666655431 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC-CC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 440 SP-SYCSYSWLVDGYCNKNNEEALLKLLDEFVSR--GL-CV-D--VSVYRALIRRFCKKEKVDYAQRLFNLMQG 506 (591)
Q Consensus 440 ~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-~~-~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 506 (591)
.+ ...++..++..|...|++++|..++++.... .. .| . ...+..++..+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 1234555556666666666666666555432 01 11 1 22344444455555666666666555554
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.25 E-value=8.5e-07 Score=88.34 Aligned_cols=124 Identities=9% Similarity=-0.077 Sum_probs=93.8
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 81 HWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 81 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
+..++..+.+.|++++|++.|+++.+.+ +.+..++..++.+|.+.|++++|++.++++.+.+
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 70 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELN------------------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD 70 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC------------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3445667778899999999999888754 3455678888888999999999999999998887
Q ss_pred CccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHccCChhhHHHHHH
Q 048533 161 LMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHA--CCKSSDVDKVEKLLC 224 (591)
Q Consensus 161 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~ 224 (591)
+. +..++..+..++...|++++|++.|+++.+..+. +...+..+..+ +.+.|++++|.+.++
T Consensus 71 p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 71 KK-YIKGYYRRAASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 65 7788888889999999999999999998887544 34455555555 777888888888887
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.24 E-value=5.6e-06 Score=68.98 Aligned_cols=101 Identities=8% Similarity=-0.053 Sum_probs=72.7
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHhhh--------CCC-------CCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcC
Q 048533 44 HKVLLNLYNCCHIPSLSCAFFKWAESA--------VPN-------YKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRD 108 (591)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~f~~~~~~--------~p~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 108 (591)
..-.+..+.+.|+++.|+..|+.+++. .|. .+....++..++.++.+.|++++|+..+++++..+
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 344566666779999999999999886 121 01244667778888888888888888888877754
Q ss_pred CCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 048533 109 FLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLM 162 (591)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 162 (591)
|.+..++..++.+|...|++++|+..|++.++.++.
T Consensus 94 ------------------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 94 ------------------ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred ------------------CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 344566777777888888888888888887776543
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.21 E-value=7.9e-06 Score=68.02 Aligned_cols=112 Identities=11% Similarity=-0.023 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcC-------CCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHH
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRD-------FLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGL 150 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 150 (591)
...+...+..+.+.|++++|+..|+++...- .+.++... . ..+....++..++.+|.+.|++++|+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~nla~~~~~~~~~~~A~ 83 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWV-E------LDRKNIPLYANMSQCYLNIGDLHEAE 83 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHH-H------HHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHH-H------HHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 4556788999999999999999999988741 01111000 0 01334467888889999999999999
Q ss_pred HHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 151 QVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV 197 (591)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (591)
..++++++.++. +..+|..+..++...|+++.|...|+...+..+.
T Consensus 84 ~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 84 ETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 999999988765 7888999999999999999999999998887543
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.19 E-value=1.2e-05 Score=77.09 Aligned_cols=138 Identities=9% Similarity=-0.113 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCc-hHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLST-PSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
...+..++..+.+.|++++|+..|+++.+...... ....... ....+....++..++.+|.+.|++++|++.++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~---~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADG---AKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHH---GGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHH---HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34567889999999999999999999886210000 0000000 0011223456777888888888888888888888
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHH
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVE 220 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 220 (591)
++.++. +..++..+..++...|++++|+..|+++.+..+. +...+..+..++.+.++.+++.
T Consensus 300 l~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 300 LEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 877654 6777888888888888888888888888776543 5566666666666666555554
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.18 E-value=5.5e-06 Score=79.35 Aligned_cols=120 Identities=13% Similarity=-0.033 Sum_probs=98.7
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHhh----------------hCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHc
Q 048533 44 HKVLLNLYNCCHIPSLSCAFFKWAES----------------AVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALR 107 (591)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~f~~~~~----------------~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 107 (591)
...++..+...|++++|+..|+.+++ ..|. ...++..++.++.+.|++++|+..++++.+.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~---~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPV---ALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHH---HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 34456667778999999999999987 3333 5678889999999999999999999999875
Q ss_pred CCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHH
Q 048533 108 DFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVW 185 (591)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 185 (591)
+ +.+..++..++.+|...|++++|++.|+++.+..+. +...+..+..++...++.+++.
T Consensus 303 ~------------------p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 303 D------------------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp C------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred C------------------chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 4 455678888999999999999999999999998765 6777777777777776666554
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.17 E-value=1.5e-05 Score=65.97 Aligned_cols=133 Identities=12% Similarity=-0.060 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----C-CCCHH
Q 048533 410 TYKALIHGFCKAKEMDIAKELLFGMLDAGF-SPS----YCSYSWLVDGYCNKNNEEALLKLLDEFVSRG----L-CVDVS 479 (591)
Q Consensus 410 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~-~~~~~ 479 (591)
++..+...+...|++++|...+.+.++... .++ ..++..+...+...|++++|...++++.+.. . .....
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344445555555555555555555543110 011 1345556666667777777777777665421 0 01144
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCcC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 480 VYRALIRRFCKKEKVDYAQRLFNLMQGN----GILGD-SVIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 480 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
++..+...+...|++++|...+++..+. +..+. ...+..+..++...|++++|.+.+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5667777777888888888888776642 11111 356677888888888888888888887653
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.16 E-value=1.4e-05 Score=78.92 Aligned_cols=133 Identities=8% Similarity=-0.063 Sum_probs=94.2
Q ss_pred hcCCCChhHHHHHHHHHhhh-----CCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCC
Q 048533 51 YNCCHIPSLSCAFFKWAESA-----VPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDD 125 (591)
Q Consensus 51 ~~~~~~~~~A~~~f~~~~~~-----~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (591)
+..+|++++|+.+++.+++. .|+.++...++..++.+|..+|++++|..++++++... . ..++.+
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~--------~--~~lG~~ 388 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGY--------M--KLYHHN 388 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------H--HHSCTT
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--------H--HHcCCC
Confidence 34569999999999998764 34434456778899999999999999999999877521 0 111223
Q ss_pred CCCccchHHHHHHHHHhcCChHHHHHHHHHHhhC-----CCc-cC-HHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048533 126 PDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVH-----NLM-PH-LHACTVLLNSLAKDRLTDMVWKVYKKMVQ 193 (591)
Q Consensus 126 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~-~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 193 (591)
.|.....++.|+..|..+|++++|+.+++++++. |.. |+ ..+.+.+..++...+.++.|..+|..+.+
T Consensus 389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556777888999999999999998887652 322 22 33445555666677777777777777754
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.15 E-value=4.8e-06 Score=64.91 Aligned_cols=91 Identities=10% Similarity=-0.122 Sum_probs=65.3
Q ss_pred cCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHH
Q 048533 90 KNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACT 169 (591)
Q Consensus 90 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 169 (591)
..|++++|+..|+++.+.++. .|.+..++..++.+|...|++++|+..|+++++.++. +..++.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~---------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 65 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQ---------------GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRV 65 (117)
T ss_dssp -----CCCHHHHHHHHSSCCC---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCC---------------CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHH
Confidence 467888888888888765311 1234456777888888888888888888888887665 677888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048533 170 VLLNSLAKDRLTDMVWKVYKKMVQLGV 196 (591)
Q Consensus 170 ~ll~~~~~~~~~~~a~~~~~~~~~~~~ 196 (591)
.+..++...|++++|+..+++..+..+
T Consensus 66 ~l~~~~~~~g~~~~A~~~~~~al~~~p 92 (117)
T 3k9i_A 66 FYAMVLYNLGRYEQGVELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 888888888888888888888877543
No 192
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.12 E-value=1.2e-05 Score=62.43 Aligned_cols=82 Identities=11% Similarity=0.038 Sum_probs=70.1
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHH
Q 048533 58 SLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLV 137 (591)
Q Consensus 58 ~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 137 (591)
+.|+..|+.+.+..|. +..++..++.++...|++++|+..|+++...+ +.+..++..++
T Consensus 2 ~~a~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~~~~~la 60 (115)
T 2kat_A 2 QAITERLEAMLAQGTD---NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD------------------PTYSVAWKWLG 60 (115)
T ss_dssp CCHHHHHHHHHTTTCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC------------------CCcHHHHHHHH
Confidence 3578899999887776 78899999999999999999999999998765 34456778889
Q ss_pred HHHHhcCChHHHHHHHHHHhhCC
Q 048533 138 IFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 138 ~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
.+|...|++++|+..|++..+..
T Consensus 61 ~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 61 KTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999988753
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.11 E-value=0.00012 Score=74.26 Aligned_cols=173 Identities=7% Similarity=-0.040 Sum_probs=134.4
Q ss_pred CCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCC----------hHHHHHHHHHHhhCCC
Q 048533 92 KHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKM----------TQDGLQVFDQMRVHNL 161 (591)
Q Consensus 92 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~ 161 (591)
...++|++.++.++..++ .+..+|+.-..++...|+ ++++++.++.+.+.++
T Consensus 43 ~~~eeal~~~~~~l~~nP------------------~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p 104 (567)
T 1dce_A 43 ELDESVLELTSQILGANP------------------DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP 104 (567)
T ss_dssp CCSHHHHHHHHHHHHHCT------------------TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHCc------------------hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC
Confidence 444677999999998764 344556666666666666 8999999999999988
Q ss_pred ccCHHhHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-ChhhHHHHHHHHhhCCCCcCcccH
Q 048533 162 MPHLHACTVLLNSLAKDR--LTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSS-DVDKVEKLLCEMEFKDVRADLFTY 238 (591)
Q Consensus 162 ~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~ 238 (591)
+ +..+|+.-.-++.+.+ +++++++.++++.+.++. +..+|+....++.+.| .++++.+.++++++.+ +-+..+|
T Consensus 105 K-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW 181 (567)
T 1dce_A 105 K-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSW 181 (567)
T ss_dssp T-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHH
T ss_pred C-CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHH
Confidence 8 9999999999999999 679999999999998876 8888988888888888 8999999999998875 4577888
Q ss_pred HHHHHHHHhc--------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048533 239 NTLIALYCKK--------------GMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRM 286 (591)
Q Consensus 239 ~~li~~~~~~--------------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 286 (591)
+.....+.+. +.++++++.+++.....+. +...|+.+...+.+.++.
T Consensus 182 ~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCc
Confidence 8887777664 4457777777777665322 556666666666555553
No 194
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.08 E-value=2e-05 Score=65.24 Aligned_cols=97 Identities=14% Similarity=-0.060 Sum_probs=62.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCCcc-C----HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----H
Q 048533 131 HVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMP-H----LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV-AN----I 200 (591)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~ 200 (591)
.++..++..|...|++++|+..+++..+..... + ..++..+...+...|++++|...+++..+.... .+ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 466778888899999999999998877642211 1 235667777777788888888777776543111 01 2
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHh
Q 048533 201 HLYNVLIHACCKSSDVDKVEKLLCEME 227 (591)
Q Consensus 201 ~~~~~ll~~~~~~g~~~~a~~~~~~~~ 227 (591)
..+..+...+...|++++|...+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344555556666666666666665544
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.08 E-value=1e-05 Score=76.54 Aligned_cols=149 Identities=11% Similarity=-0.081 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
...+..++..+.+.|++++|+..|+++....+.. . .+...++..++...+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~--~------------------------~~~~~~~~~~~~~~l~--- 229 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDD--F------------------------MFQLYGKYQDMALAVK--- 229 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHH--H------------------------HHTCCHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccc--h------------------------hhhhcccHHHHHHHHH---
Confidence 4557788999999999999999999988754210 0 1222344444443321
Q ss_pred hCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCccc
Q 048533 158 VHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFT 237 (591)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 237 (591)
...|..+..++.+.|+++.|+..++..++.... +...|..+..++...|++++|...|++..... +.+...
T Consensus 230 -------~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a 300 (338)
T 2if4_A 230 -------NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAI 300 (338)
T ss_dssp -------THHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------
T ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHH
Confidence 237888999999999999999999999987654 78889999999999999999999999998764 335566
Q ss_pred HHHHHHH-HHhcCChhHHHHHHHHHHHC
Q 048533 238 YNTLIAL-YCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 238 ~~~li~~-~~~~g~~~~a~~~~~~~~~~ 264 (591)
+..+... ....+..+.+...|.+|...
T Consensus 301 ~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 301 RRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 6666655 34456778888999988765
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.04 E-value=3.6e-05 Score=62.20 Aligned_cols=109 Identities=12% Similarity=-0.011 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048533 79 QSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRV 158 (591)
Q Consensus 79 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 158 (591)
..+...+..+.+.|++++|+..|+++++.++..... ......+.+..+|..+..++.+.|++++|+..+++.++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~------~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE------EAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT------SCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch------hhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445678899999999999999999999876542110 00000001123677778888888888888888888777
Q ss_pred C-------CCccCHHhH----HHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 159 H-------NLMPHLHAC----TVLLNSLAKDRLTDMVWKVYKKMVQL 194 (591)
Q Consensus 159 ~-------~~~~~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~ 194 (591)
. ++. +..+| .....++...|++++|+..|++..+.
T Consensus 86 l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 86 YFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5 443 45566 66667777777777777777766553
No 197
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.01 E-value=1.7e-05 Score=63.91 Aligned_cols=94 Identities=12% Similarity=-0.040 Sum_probs=76.8
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCch----------HHHHHHHHHHHcCCCCchHHHHHHHhhcC
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFK----------SAQNMLEKIALRDFLSTPSVLNALVKIHD 124 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (591)
+.+++|+..|+.+.+..|+ +..++..++.++...|+++ +|+..|+++++.+
T Consensus 16 ~~feeA~~~~~~Ai~l~P~---~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld---------------- 76 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL---DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID---------------- 76 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred hHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC----------------
Confidence 4689999999999999998 8999999999999998765 9999999998876
Q ss_pred CCCCccchHHHHHHHHHhcC-----------ChHHHHHHHHHHhhCCCccCHHhHHHH
Q 048533 125 DPDGNSHVLSWLVIFYANLK-----------MTQDGLQVFDQMRVHNLMPHLHACTVL 171 (591)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~~l 171 (591)
|....++..+..+|...| ++++|++.|+++++.++ +...|...
T Consensus 77 --P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P--~~~~y~~a 130 (158)
T 1zu2_A 77 --PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP--DNTHYLKS 130 (158)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred --cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC--CCHHHHHH
Confidence 456677888999998875 88999999999888754 43444333
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.00 E-value=0.00014 Score=58.35 Aligned_cols=112 Identities=15% Similarity=0.117 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 048533 422 KEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCK----KEKVDYA 497 (591)
Q Consensus 422 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 497 (591)
+++++|...|++..+.| .|... +...|...+..+.|.++|++..+.| ++..+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35666777777777665 23332 5555666666777777777777664 56667777777766 6777777
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCC
Q 048533 498 QRLFNLMQGNGILGDSVIYTSLAYAYWR----AGEPKACSDILDDMYRRRL 544 (591)
Q Consensus 498 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 544 (591)
.++|++..+.| ++..+..|...|.. .+++++|.++|++..+.|.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77777777764 56666677777777 6777777777777777763
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.86 E-value=1.3e-05 Score=61.53 Aligned_cols=97 Identities=12% Similarity=-0.037 Sum_probs=73.2
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhc
Q 048533 44 HKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIH 123 (591)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (591)
...++..+...|++++|+..|+.+++..|. +..++..++.++.+.|++++|+..++++....+.......
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------- 76 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQPQ---NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI------- 76 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH-------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH-------
Confidence 345566777789999999999999998887 7889999999999999999999999999986543211100
Q ss_pred CCCCCccchHHHHHHHHHhcCChHHHHHHHHH
Q 048533 124 DDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQ 155 (591)
Q Consensus 124 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 155 (591)
...++..+..++...|+.+.|+..+++
T Consensus 77 -----~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 77 -----RSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp -----HHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred -----HHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 023456667777777777776665544
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.82 E-value=0.00011 Score=53.72 Aligned_cols=80 Identities=13% Similarity=0.062 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
..++..++..+...|++++|+..++++.... +.+..++..++.+|.+.|++++|+..|++..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD------------------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC------------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4555666777777777777777777766543 2234455666666777777777777777766
Q ss_pred hCCCccCHHhHHHHHHHHH
Q 048533 158 VHNLMPHLHACTVLLNSLA 176 (591)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~ 176 (591)
+.++. +..++..+..++.
T Consensus 71 ~~~p~-~~~~~~~l~~~~~ 88 (91)
T 1na3_A 71 ELDPN-NAEAKQNLGNAKQ 88 (91)
T ss_dssp HHCTT-CHHHHHHHHHHHH
T ss_pred hcCCC-CHHHHHHHHHHHH
Confidence 65443 4455555554443
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.82 E-value=0.00013 Score=53.28 Aligned_cols=82 Identities=17% Similarity=0.043 Sum_probs=59.6
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 129 NSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIH 208 (591)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 208 (591)
+...+..++..|...|++++|+..|++..+.++. +..++..+..++...|++++|...+++..+..+. +...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 4456677778888888888888888888876544 6677778888888888888888888888776543 4555555555
Q ss_pred HHHc
Q 048533 209 ACCK 212 (591)
Q Consensus 209 ~~~~ 212 (591)
++.+
T Consensus 86 ~~~~ 89 (91)
T 1na3_A 86 AKQK 89 (91)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.81 E-value=8.1e-05 Score=56.94 Aligned_cols=89 Identities=10% Similarity=-0.051 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
...+..++..+...|++++|+..|+++...+ |.+..++..++.+|.+.|++++|++.+++++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ------------------PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4556667777777777777777777776643 2334556666667777777777777777776
Q ss_pred hCCCccC------HHhHHHHHHHHHhcCChhHHH
Q 048533 158 VHNLMPH------LHACTVLLNSLAKDRLTDMVW 185 (591)
Q Consensus 158 ~~~~~~~------~~~~~~ll~~~~~~~~~~~a~ 185 (591)
+..+. + ...+..+..++...|+++.|.
T Consensus 66 ~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 66 RYTST-AEHVAIRSKLQYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp TSCSS-TTSHHHHHHHHHHHHHHHHHHHCCCCCS
T ss_pred HhCCC-ccHHHHHHHHHHHHHHHHHHHHhHhhhH
Confidence 65433 2 334444444444444444443
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.79 E-value=9.8e-05 Score=55.35 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+..++..++.++.+.|++++|+..|+++.+.+ |.+..++..++.+|...|++++|++.|++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD------------------PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 67777788888888888888888888877754 334556777777888888888888888777
Q ss_pred hhC
Q 048533 157 RVH 159 (591)
Q Consensus 157 ~~~ 159 (591)
++.
T Consensus 68 l~l 70 (100)
T 3ma5_A 68 IEV 70 (100)
T ss_dssp HHH
T ss_pred Hhh
Confidence 654
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.75 E-value=0.0011 Score=52.99 Aligned_cols=111 Identities=14% Similarity=-0.016 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 048533 387 GDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCN----KNNEEAL 462 (591)
Q Consensus 387 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 462 (591)
++.++|...|++..+.+ .++.. +...|...+..++|.+.|++..+.| +...+..+...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35566677777666665 22222 5555556666666777777776653 45566666666666 6677777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 048533 463 LKLLDEFVSRGLCVDVSVYRALIRRFCK----KEKVDYAQRLFNLMQGNG 508 (591)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 508 (591)
.++|++..+.| ++..+..|...|.. .+++++|.++|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777777664 56666777777776 677777777777777765
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.70 E-value=0.00044 Score=53.24 Aligned_cols=79 Identities=13% Similarity=0.132 Sum_probs=51.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 462 LLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 462 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
|+..++++.+..+. +...+..+...|...|++++|+..+++..+.. +.+...|..+..+|...|++++|...|+++.+
T Consensus 4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556666655433 56666677777777777777777777766642 22456666677777777777777777777665
Q ss_pred C
Q 048533 542 R 542 (591)
Q Consensus 542 ~ 542 (591)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 3
No 206
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.67 E-value=0.00049 Score=67.98 Aligned_cols=125 Identities=6% Similarity=-0.143 Sum_probs=76.1
Q ss_pred HHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-C-CHHHHHH
Q 048533 418 FCKAKEMDIAKELLFGMLDA---GFSPS----YCSYSWLVDGYCNKNNEEALLKLLDEFVSR-----GLC-V-DVSVYRA 483 (591)
Q Consensus 418 ~~~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~ 483 (591)
+...|++++|..++++.++. -+.|+ ..+++.|..+|...|++++|..+++++++. |.. | ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34566666666666665531 11121 345666677777777777777777666532 211 1 2346677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----CCCC-cC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 484 LIRRFCKKEKVDYAQRLFNLMQG-----NGIL-GD-SVIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 484 l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
|...|...|++++|..++++..+ .|.. |+ ..+...+..++...|.+++|..+|.++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777888888777777654 2321 22 244556667777778888888888877653
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.67 E-value=0.00013 Score=58.89 Aligned_cols=101 Identities=9% Similarity=-0.106 Sum_probs=58.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCc-CHHHHHHHHHHHH
Q 048533 456 KNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEK----------VDYAQRLFNLMQGNGILG-DSVIYTSLAYAYW 524 (591)
Q Consensus 456 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 524 (591)
.+.+++|.+.++...+..+. +...|..+..++...++ +++|+..|++.++. .| +...|..+..+|.
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHH
Confidence 34455666666666655433 55555555555555544 34666666666664 23 3456666666666
Q ss_pred HcC-----------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcc
Q 048533 525 RAG-----------EPKACSDILDDMYRRRLMITLKIYRSFSASYAKD 561 (591)
Q Consensus 525 ~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 561 (591)
..| ++++|++.|+++++. .|+...|..-+....+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~~ka 137 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTAKA 137 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHhC
Confidence 553 677777777777774 35555555555544443
No 208
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.55 E-value=0.00038 Score=67.50 Aligned_cols=96 Identities=10% Similarity=0.018 Sum_probs=72.1
Q ss_pred CCCChhHHHHHHHHHhhh-----CCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCC
Q 048533 53 CCHIPSLSCAFFKWAESA-----VPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPD 127 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~-----~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (591)
..|++++|+..++.+++. .|+.++...++.+++.+|..+|++++|..++++++.-. . ..++.+.|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~--------~--~~lG~~Hp 379 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPY--------S--KHYPVYSL 379 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------H--HHSCSSCH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--------H--HHcCCCCh
Confidence 458899999999998763 44444456778899999999999999999999987520 0 01112334
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048533 128 GNSHVLSWLVIFYANLKMTQDGLQVFDQMRV 158 (591)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 158 (591)
+....++.|+..|..+|++++|+.+|+++++
T Consensus 380 ~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 380 NVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4445677788889999999999998888765
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.54 E-value=0.00023 Score=53.23 Aligned_cols=67 Identities=9% Similarity=-0.035 Sum_probs=57.9
Q ss_pred CChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHc
Q 048533 38 LTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALR 107 (591)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 107 (591)
|....+...++.++...|++++|+..|+.+++..|+ +..++..++.++...|++++|+..|++....
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD---YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 444556667778888889999999999999999887 7789999999999999999999999998764
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.31 E-value=0.00015 Score=54.10 Aligned_cols=54 Identities=9% Similarity=-0.108 Sum_probs=42.6
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCCCHH-HHHHHHHHHHcCCCchHHHHHHHHHHHcCC
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKHSLQ-SHWTMIHILTKNKHFKSAQNMLEKIALRDF 109 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 109 (591)
..|++++|+..|+.+++..|. +.. ++..++.++...|++++|+..|+++...++
T Consensus 12 ~~~~~~~A~~~~~~al~~~p~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 12 NQGDIENALQALEEFLQTEPV---GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHTCHHHHHHHHHHHHHHCSS---THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 347888888888888887776 667 778888888888888888888888877654
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.10 E-value=0.0015 Score=63.55 Aligned_cols=105 Identities=7% Similarity=-0.181 Sum_probs=74.7
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhh-----CCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHH
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESA-----VPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLN 117 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~-----~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 117 (591)
+...+..++. .|++++|+..++.+++. .|+.+....++..++.+|..+|++++|+.++++++... .
T Consensus 290 ll~~ie~~~~-~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~--------~ 360 (429)
T 3qwp_A 290 SLKKIEELKA-HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPY--------R 360 (429)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------H
T ss_pred HHHHHHHHHh-hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhH--------H
Confidence 3344455543 48999999999999764 23333346778899999999999999999999887521 0
Q ss_pred HHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048533 118 ALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRV 158 (591)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 158 (591)
..++...|.....++.|+..|..+|++++|+.+++++.+
T Consensus 361 --~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 361 --IFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp --HHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --HHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 011122333445677788889999999999998888765
No 212
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.07 E-value=0.0032 Score=50.09 Aligned_cols=87 Identities=13% Similarity=0.092 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCC---CchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchH
Q 048533 57 PSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNK---HFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL 133 (591)
Q Consensus 57 ~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (591)
...+.+.|.......| .+..+.+..+-+|.+.+ ++++++.+|+.+.+.+. |..+.+.+
T Consensus 14 l~~~~~~y~~e~~~~~---~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~----------------p~~~rd~l 74 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS---VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGS----------------KEEQRDYV 74 (152)
T ss_dssp HHHHHHHHHHHHHTTC---CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC----------------HHHHHHHH
T ss_pred HHHHHHHHHHHHccCC---CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC----------------ccchHHHH
Confidence 3445566666555444 38999999999999998 67799999999888541 11345788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQMRVHNLM 162 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 162 (591)
..++.+|.+.|++++|++.++.+++..|.
T Consensus 75 Y~LAv~~~kl~~Y~~A~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 75 FYLAVGNYRLKEYEKALKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 88999999999999999999999998654
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.03 E-value=0.0029 Score=46.20 Aligned_cols=52 Identities=8% Similarity=-0.086 Sum_probs=48.3
Q ss_pred ChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC
Q 048533 56 IPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFL 110 (591)
Q Consensus 56 ~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 110 (591)
..++|...|+.+++..|+ +..+...++..+.+.|++++|+..++++...++.
T Consensus 24 ~~~~A~~~l~~AL~~dp~---~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 24 MTDEVSLLLEQALQLEPY---NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHCcC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 378999999999999988 9999999999999999999999999999987654
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.99 E-value=0.0051 Score=57.18 Aligned_cols=130 Identities=6% Similarity=-0.065 Sum_probs=80.7
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH----cCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCcc
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILT----KNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNS 130 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (591)
.+..+|+.+|+.+++..|+ ...++..++.++. ..+.......-++... .+. ......+.++
T Consensus 213 ~~~~~A~~l~e~Al~lDP~---~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~-----------~a~-~a~~~~~~~a 277 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPE---FTYARAEKALVDIVRHSQHPLDEKQLAALNTEI-----------DNI-VTLPELNNLS 277 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH-----------HHH-HTCGGGTTCH
T ss_pred HHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH-----------HHH-HhcccCCcCH
Confidence 3458999999999999998 5666655444443 1111111111111110 010 1111224556
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 048533 131 HVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLY 203 (591)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 203 (591)
.++..+...+...|++++|+..+++++..+ |+...|..+...+.-.|++++|.+.|++....++ ...+|
T Consensus 278 ~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P--~~~t~ 346 (372)
T 3ly7_A 278 IIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP--GANTL 346 (372)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC--SHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CcChH
Confidence 666666666777788888888888888876 5777777777888888888888888888887643 44444
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.97 E-value=0.014 Score=54.32 Aligned_cols=74 Identities=16% Similarity=0.034 Sum_probs=50.0
Q ss_pred CcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHH
Q 048533 232 RADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYT 307 (591)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 307 (591)
+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|.+.....|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence 3455566666666666677777777777777663 5666666666777777777777777777766666665543
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.96 E-value=0.0061 Score=44.45 Aligned_cols=67 Identities=12% Similarity=-0.075 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHcCCC---chHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKH---FKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVF 153 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 153 (591)
+...+..++.++...+. .++|..+++++.+.+ |.+...+..++..+.+.|++++|+..|
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d------------------p~~~rA~~~lg~~~~~~g~y~~Ai~~w 66 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE------------------PYNEAALSLIANDHFISFRFQEAIDTW 66 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC------------------cCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66777777777654443 677888888877755 445556666777777888888888888
Q ss_pred HHHhhCCC
Q 048533 154 DQMRVHNL 161 (591)
Q Consensus 154 ~~~~~~~~ 161 (591)
+++++.++
T Consensus 67 ~~~l~~~p 74 (93)
T 3bee_A 67 VLLLDSND 74 (93)
T ss_dssp HHHHTCCC
T ss_pred HHHHhhCC
Confidence 88777654
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.91 E-value=0.0048 Score=45.60 Aligned_cols=62 Identities=16% Similarity=0.089 Sum_probs=44.9
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccc-hHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 83 TMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSH-VLSWLVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 83 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
..+..+.+.|++++|+..++++...+ +.+.. ++..++.+|...|++++|++.|+++++.++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~------------------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE------------------PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC------------------SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC------------------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 45667777788888888888877654 33344 666777778888888888888888877655
Q ss_pred c
Q 048533 162 M 162 (591)
Q Consensus 162 ~ 162 (591)
.
T Consensus 67 ~ 67 (99)
T 2kc7_A 67 D 67 (99)
T ss_dssp T
T ss_pred C
Confidence 4
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.82 E-value=0.015 Score=46.26 Aligned_cols=83 Identities=12% Similarity=0.050 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCc--CHHHHHHHHHHHHHcCChhHHH
Q 048533 459 EEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKE---KVDYAQRLFNLMQGNGILG--DSVIYTSLAYAYWRAGEPKACS 533 (591)
Q Consensus 459 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 533 (591)
...+.+-|.+..+.+. ++..+...+..++++++ ++++++.+++...+.+ .| +...+-.+.-+|.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455555666555554 57777777777788777 5567888888777753 23 2455566777778888888888
Q ss_pred HHHHHHHHCC
Q 048533 534 DILDDMYRRR 543 (591)
Q Consensus 534 ~~~~~~~~~~ 543 (591)
++++.+++..
T Consensus 92 ~y~~~lL~ie 101 (152)
T 1pc2_A 92 KYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 8888888853
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.81 E-value=0.0036 Score=60.71 Aligned_cols=86 Identities=8% Similarity=-0.022 Sum_probs=60.8
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CC-CCcCH-HHHHHHHH
Q 048533 456 KNNEEALLKLLDEFVSR---GLCVD----VSVYRALIRRFCKKEKVDYAQRLFNLMQG-----NG-ILGDS-VIYTSLAY 521 (591)
Q Consensus 456 ~g~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-~~p~~-~~~~~l~~ 521 (591)
.|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|..++++..+ .| -.|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777777666542 11222 35677888888888888888888887764 22 12333 67888899
Q ss_pred HHHHcCChhHHHHHHHHHHH
Q 048533 522 AYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~~ 541 (591)
.|..+|++++|..+++++.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999988876
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.71 E-value=0.007 Score=58.76 Aligned_cols=90 Identities=10% Similarity=-0.088 Sum_probs=63.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CC-CCcCH-HHHH
Q 048533 452 GYCNKNNEEALLKLLDEFVSRG---LCVD----VSVYRALIRRFCKKEKVDYAQRLFNLMQG-----NG-ILGDS-VIYT 517 (591)
Q Consensus 452 ~~~~~g~~~~a~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-~~p~~-~~~~ 517 (591)
.+.+.|++++|+.++++..+.. +.|+ ..+++.+..+|...|++++|..+++++.+ .| -.|+. .+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445667777777777776431 1222 45677888888888888888888887764 12 22333 6778
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHH
Q 048533 518 SLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 518 ~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
.|...|...|++++|..+++++.+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 899999999999999999998876
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.66 E-value=0.1 Score=46.40 Aligned_cols=86 Identities=12% Similarity=-0.013 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcc-----CChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhc-CChhHH
Q 048533 182 DMVWKVYKKMVQLGVVA-NIHLYNVLIHACCKS-----SDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKK-GMHYEA 254 (591)
Q Consensus 182 ~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a 254 (591)
..|...+++..+.++.- +...|..+...|.+. |+.++|.+.|++.+..+..-+..++......++.. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 34445555555432210 123445555555552 55555555555555543211244444555555442 555555
Q ss_pred HHHHHHHHHCCCC
Q 048533 255 LAVQDRMEREGIS 267 (591)
Q Consensus 255 ~~~~~~~~~~~~~ 267 (591)
.+.+++.......
T Consensus 260 ~~~L~kAL~a~p~ 272 (301)
T 3u64_A 260 DEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHCCGG
T ss_pred HHHHHHHHcCCCC
Confidence 5555555554433
No 222
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.49 E-value=0.075 Score=41.63 Aligned_cols=118 Identities=9% Similarity=0.012 Sum_probs=78.7
Q ss_pred CCHHHHHHHHHHHHcCCCc------hHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHH-HHHHhcCChHH
Q 048533 76 HSLQSHWTMIHILTKNKHF------KSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLV-IFYANLKMTQD 148 (591)
Q Consensus 76 ~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~ 148 (591)
.+.++++..+..+-+.|+. ++.+++|+++...-++.....- ...++.|+- ..+...+++++
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~w------------rrYI~LWIrYA~~~ei~D~d~ 78 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQN------------ESFARIQVRFAELKAIQEPDD 78 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTC------------HHHHHHHHHHHHHHHHHCGGG
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccH------------HHHHHHHHHHHHHHHhcCHHH
Confidence 3788888888888888888 7888888888775433211100 111222211 12344588999
Q ss_pred HHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 149 GLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLI 207 (591)
Q Consensus 149 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 207 (591)
|.++|+.+++.+-+ -...|......-.++|+...|.+++......+..| ...+...+
T Consensus 79 aR~vy~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~ 135 (161)
T 4h7y_A 79 ARDYFQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIAL 135 (161)
T ss_dssp CHHHHHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHH
T ss_pred HHHHHHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHH
Confidence 99999998776333 36677777788888999999999999988887774 33444333
No 223
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.48 E-value=6.3e-06 Score=77.72 Aligned_cols=214 Identities=12% Similarity=0.014 Sum_probs=141.6
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
.+.+|..++.++.+.|+..+|++.|-+ ..++..|..++.+..+.|.+++-++.+...
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk-----------------------A~Dps~y~eVi~~A~~~~~~edLv~yL~Ma 109 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK-----------------------ADDPSSYMEVVQAANTSGNWEELVKYLQMA 109 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC-----------------------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh-----------------------CCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 566778899999999999999877622 223345666777778889999999988777
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCC------
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKD------ 230 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------ 230 (591)
++..- +...=+.|+-+|++.++..+..+++. .||..-...+.+-|...|.++.|.-+|..+..-.
T Consensus 110 Rk~~k--e~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstL 180 (624)
T 3lvg_A 110 RKKAR--ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTL 180 (624)
T ss_dssp STTCC--STTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSS
T ss_pred HHHhc--ccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHH
Confidence 76533 33445788899999888765443332 3566666677788888888887777776553210
Q ss_pred --------------CCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048533 231 --------------VRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDI 296 (591)
Q Consensus 231 --------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 296 (591)
-..++.||..+-.+|...+.+.-|.-.--.++-. || -...++..|-..|.+++-+.+++.-
T Consensus 181 V~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 181 VHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp SSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 1235667888888888888777765554444322 11 1223566677788888888888877
Q ss_pred hcC-CCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 297 KGA-TPNHVTYTTLIDGYCRANDLEEALRLREV 328 (591)
Q Consensus 297 ~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 328 (591)
.+. ....-.|+-|.-.|++- ++++..+.++.
T Consensus 256 lglErAHmGmFTELaILYsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 256 LGLERAHMGMFTELAILYSKF-KPQKMREHLEL 287 (624)
T ss_dssp TTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTT
T ss_pred hCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 763 34566677777666654 45555544443
No 224
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.38 E-value=4.4e-05 Score=72.13 Aligned_cols=411 Identities=10% Similarity=0.100 Sum_probs=230.2
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcC
Q 048533 45 KVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHD 124 (591)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (591)
..|+......+...+|++.|-++. ++..|..++.+..+.|++++-+..+.-+++.
T Consensus 58 s~LgkAqL~~~~v~eAIdsyIkA~--------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~----------------- 112 (624)
T 3lvg_A 58 SQLAKAQLQKGMVKEAIDSYIKAD--------DPSSYMEVVQAANTSGNWEELVKYLQMARKK----------------- 112 (624)
T ss_dssp SSHHHHTTTSSSCTTTTTSSCCCS--------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-----------------
T ss_pred HHHHHHHHccCchHHHHHHHHhCC--------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-----------------
Confidence 345666666678888888876542 3334667888999999999999998776653
Q ss_pred CCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC---------
Q 048533 125 DPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLG--------- 195 (591)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------- 195 (591)
...+.+=+.|+-+|++.++..+-.+++. .||..-...+..-|...|.++.|.-+|..+....
T Consensus 113 --~ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L 183 (624)
T 3lvg_A 113 --ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHL 183 (624)
T ss_dssp --CCSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSC
T ss_pred --hcccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHH
Confidence 2233445556667777777655333321 2454455566666666666666666655443211
Q ss_pred -----------CCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 196 -----------VVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 196 -----------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
-..+..||..+-.+|...+++.-|.-.--.++-. +.-...++..|-..|.+++.+.+++.-...
T Consensus 184 ~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 184 GEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp SGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 1236788999999999999998887665555432 223345677788999999999999887632
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc--CCC-------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 048533 265 GISPDIVTYNSLIHGFCREGRMREARRLFRDIKG--ATP-------NHVTYTTLIDGYCRANDLEEALRLREVMAAK--- 332 (591)
Q Consensus 265 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--- 332 (591)
-......|+.|.-.|++- ++++..+.++..-. .-| ....|.-++-.|..-.++|.|... |..+
T Consensus 259 -ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h~~~ 333 (624)
T 3lvg_A 259 -ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTD 333 (624)
T ss_dssp -TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSCHHH
T ss_pred -CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhCChh
Confidence 234677888888888765 45555555544322 111 345678888888888888876532 1111
Q ss_pred ----C-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048533 333 ----G-------VYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLE 401 (591)
Q Consensus 333 ----~-------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 401 (591)
+ -..+...|...|..|... .+...+-|+.++...=|..++.++|++.-.
T Consensus 334 Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e--------------------~P~lL~DLL~vL~prlDh~RvV~~~~k~~~ 393 (624)
T 3lvg_A 334 AWKEGQFKDIITKVANVELYYRAIQFYLEF--------------------KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQ 393 (624)
T ss_dssp HCCGGGGTTTGGGCSCSHHHHHHHHHHTTS--------------------CCTTSHHHHHHHCTTCCSTTTHHHHHTTTC
T ss_pred hccHHHHHHHHHHcchHHHHHHHHHHHHHh--------------------ChHHHHHHHHhccccCChHHHHHHHHhcCC
Confidence 0 012334444444443322 111233344443333334444333332210
Q ss_pred C----------CCCCCHHHHHHHHHHHHhcCCHHHHHH------------HHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048533 402 A----------GLMLDQFTYKALIHGFCKAKEMDIAKE------------LLFGMLDAGFSPSYCSYSWLVDGYCNKNNE 459 (591)
Q Consensus 402 ~----------~~~~~~~~~~~l~~~~~~~~~~~~a~~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 459 (591)
. ....+...=.++-..|....+++.-.. +-.++.++ +-...-..-...|.+.+++
T Consensus 394 LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH---eL~eFRrIAA~LYkkn~rw 470 (624)
T 3lvg_A 394 LPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH---ELIEFRRIAAYLFKGNNRW 470 (624)
T ss_dssp GGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC---SSHHHHHHHHHHHHTTCHH
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC---chHHHHHHHHHHHHhcccH
Confidence 0 011123333344445556665554332 22222221 1222223334456667777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHH
Q 048533 460 EALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSD 534 (591)
Q Consensus 460 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 534 (591)
++++.+.++ ...|.-.|.....+|+.+-|.++++-..+.| +...|...+-.|...=+++-+.+
T Consensus 471 ~qsi~l~Kk---------DklykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlE 533 (624)
T 3lvg_A 471 KQSVELCKK---------DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 533 (624)
T ss_dssp HHHSSCSST---------TCCTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHH
T ss_pred HHHHHHHHh---------cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHH
Confidence 666554321 1123334455566677777777777776644 45556666666655555554443
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.27 E-value=0.021 Score=42.72 Aligned_cols=75 Identities=7% Similarity=-0.012 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+..-.+.++..+.+.|++..|...|+.+.+....... .......++..++.+|.+.|++++|+..++++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-----------~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-----------STIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-----------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-----------CcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 4555678999999999999999999998774211100 11345577888999999999999999999999
Q ss_pred hhCCCc
Q 048533 157 RVHNLM 162 (591)
Q Consensus 157 ~~~~~~ 162 (591)
.+..+.
T Consensus 73 l~l~P~ 78 (104)
T 2v5f_A 73 LELDPE 78 (104)
T ss_dssp HHHCTT
T ss_pred HhcCCC
Confidence 887554
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.10 E-value=0.032 Score=49.68 Aligned_cols=97 Identities=8% Similarity=-0.030 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcC-----CCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccc
Q 048533 57 PSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKN-----KHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSH 131 (591)
Q Consensus 57 ~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (591)
...|...++++++..|+ ..+..+|..++..|.+. |+.++|.+.|++.++.++ ..+..
T Consensus 179 l~~A~a~lerAleLDP~-~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP-----------------~~~id 240 (301)
T 3u64_A 179 VHAAVMMLERACDLWPS-YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCS-----------------AHDPD 240 (301)
T ss_dssp HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCC-----------------TTCSH
T ss_pred HHHHHHHHHHHHHhCCC-cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCC-----------------CCCch
Confidence 46788888999988886 22356888899999884 999999999999988763 22356
Q ss_pred hHHHHHHHHHhc-CChHHHHHHHHHHhhCCCc--cCHHhHHHH
Q 048533 132 VLSWLVIFYANL-KMTQDGLQVFDQMRVHNLM--PHLHACTVL 171 (591)
Q Consensus 132 ~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~--~~~~~~~~l 171 (591)
+....+..+++. |+.++|.+.+++.+..++. |+....+.+
T Consensus 241 ~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 241 HHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 677777888874 8899999999999998777 665444443
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.05 E-value=0.41 Score=51.02 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=13.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048533 407 DQFTYKALIHGFCKAKEMDIAKELLFGM 434 (591)
Q Consensus 407 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 434 (591)
+...|..+...+.+.++++.|.+.|.++
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3444444444444555555554444443
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.04 E-value=0.073 Score=39.63 Aligned_cols=67 Identities=7% Similarity=0.034 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 477 DVSVYRALIRRFCKKEKVDYAQRLFNLMQGNG------ILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 477 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
+..-+..++..+...|++..|...++.+.+.- -.+...++..+..++.+.|++++|..+++++.+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 34445566666666677777777766665420 12234666777777777777777777777777643
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.91 E-value=0.052 Score=41.48 Aligned_cols=87 Identities=11% Similarity=0.056 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchH---HHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchH
Q 048533 57 PSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKS---AQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL 133 (591)
Q Consensus 57 ~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (591)
...+.+.|.......+ .+..+.+.++-++.+.++..+ ++.+++.+.+.+. +..+.+.+
T Consensus 17 l~~~~~~y~~e~~~~~---~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~----------------p~~~Rd~l 77 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS---VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS----------------KEEQRDYV 77 (126)
T ss_dssp HHHHHHHHHHHHHHSC---CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC----------------HHHHHHHH
T ss_pred HHHHHHHHHHHhccCC---CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC----------------cchHHHHH
Confidence 3455566665554433 478999999999999988877 8899988876431 12345778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQMRVHNLM 162 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 162 (591)
..++.++.+.|++++|++.++.+++..+.
T Consensus 78 Y~LAvg~yklg~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 78 FYLAVGNYRLKEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence 88999999999999999999999998654
No 230
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.83 E-value=0.21 Score=53.24 Aligned_cols=154 Identities=16% Similarity=0.156 Sum_probs=101.9
Q ss_pred HhcCCHHHHHH-HHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048533 349 CKEGRIRDANR-LLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIA 427 (591)
Q Consensus 349 ~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 427 (591)
...+++++|.+ ++..+ ++......++..+.+.|..+.|.++.+ +.. .-.......|+++.|
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCCHHHH
Confidence 45677777766 44111 112233667777778888888876642 211 112345678999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 428 KELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGN 507 (591)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 507 (591)
.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++.+.....
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9886543 5678999999999999999999999998753 344555566677777777766666654
Q ss_pred CCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 508 GILGDSVIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 508 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
|- ++....+|.+.|++++|.+++.++-+
T Consensus 737 ~~------~~~A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 737 GK------FNLAFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp TC------HHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred Cc------hHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 31 33444556667777777777665543
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.82 E-value=0.44 Score=36.49 Aligned_cols=68 Identities=13% Similarity=0.090 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 048533 477 DVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLM 545 (591)
Q Consensus 477 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 545 (591)
+...+...+......|.-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++.++|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4566777788888999999999999987553 5788999999999999999999999999999999975
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.75 Score=37.57 Aligned_cols=129 Identities=9% Similarity=0.066 Sum_probs=85.3
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh
Q 048533 138 IFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVD 217 (591)
Q Consensus 138 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 217 (591)
..-.+.|+++.|.++.+.+ .+...|..|.......|+++.|.+.|..... +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3456678888888887765 2667888888888888888888888887642 344555666678777
Q ss_pred hHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048533 218 KVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDI 296 (591)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 296 (591)
...++-+....+| -++....++.-.|+++++.++|.+.-+ .|.. .......|..+.|.++...+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 7776666555543 355666667777888888888754322 2211 11122356677777777665
No 233
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.39 E-value=0.8 Score=50.75 Aligned_cols=155 Identities=8% Similarity=-0.014 Sum_probs=101.3
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHc----CCCC-chHHHHHHHhhcCCCCCc
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALR----DFLS-TPSVLNALVKIHDDPDGN 129 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~ 129 (591)
+.++.|.++..| .|. +....+.++.++...|++++|...|+++... +... ...-...+..........
T Consensus 826 ~~~~~~~~l~~~----~~~---~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 898 (1139)
T 4fhn_B 826 KQYNACMQLIGW----LNS---DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLL 898 (1139)
T ss_dssp SCTTHHHHHHHH----SCC---CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSS
T ss_pred hhHHHHHHHhhh----ccC---CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccH
Confidence 667777777666 343 5666678999999999999999999886431 1111 111122222222223334
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccC----HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 130 SHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPH----LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNV 205 (591)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 205 (591)
...|..++..+-+.+.++.++++-..+++.....+ ...|..+.+.+...|++++|...+-.+..... -......
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~ 976 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHH
Confidence 45677788888888999988888877766432212 12577788888888888888888877765433 3556666
Q ss_pred HHHHHHccCChhh
Q 048533 206 LIHACCKSSDVDK 218 (591)
Q Consensus 206 ll~~~~~~g~~~~ 218 (591)
++..++..|..+.
T Consensus 977 LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 977 FVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHCCHHH
T ss_pred HHHHHHhCCChhh
Confidence 7776776665443
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.30 E-value=0.25 Score=37.68 Aligned_cols=84 Identities=13% Similarity=0.040 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCc--CHHHHHHHHHHHHHcCChhHH
Q 048533 458 NEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDY---AQRLFNLMQGNGILG--DSVIYTSLAYAYWRAGEPKAC 532 (591)
Q Consensus 458 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 532 (591)
....+.+-+......|. |+..+-..+..++.++.+... ++.+++.+...+ .| .-...-.+.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34445555555544443 566666677777777766555 777777776653 22 224455566677888888888
Q ss_pred HHHHHHHHHCC
Q 048533 533 SDILDDMYRRR 543 (591)
Q Consensus 533 ~~~~~~~~~~~ 543 (591)
.++++.+++..
T Consensus 94 ~~~~~~lL~~e 104 (126)
T 1nzn_A 94 LKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 88888888754
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.18 E-value=0.2 Score=39.34 Aligned_cols=55 Identities=18% Similarity=0.165 Sum_probs=37.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 048533 491 KEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMI 546 (591)
Q Consensus 491 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 546 (591)
.+++++|+++|+.+++..-.. ..+|.....--.++|+...|.+++.+....+..|
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 367777777777776532222 5666666666677777777777777777776553
No 236
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.85 E-value=3.1 Score=40.37 Aligned_cols=49 Identities=6% Similarity=0.074 Sum_probs=26.8
Q ss_pred CChhHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048533 249 GMHYEALAVQDRMERE-----GISPDIVTYNSLIHGFCREGRMREARRLFRDIK 297 (591)
Q Consensus 249 g~~~~a~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 297 (591)
|+++.|++.+..+.+. +..........++..|...|+++...+.+..+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls 83 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS 83 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5566666655544431 223344555666666666666666655555443
No 237
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.80 E-value=1.4 Score=36.04 Aligned_cols=98 Identities=13% Similarity=0.169 Sum_probs=46.4
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048533 384 CKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALL 463 (591)
Q Consensus 384 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 463 (591)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.+...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3445555555554433 1445555555555555555555555554431 223333344445555544
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048533 464 KLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFN 502 (591)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 502 (591)
++-+.....|- ++.....+...|+++++.+++.
T Consensus 81 kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 81 KMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHH
Confidence 44444443321 2333334444555555555553
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.78 E-value=5 Score=42.46 Aligned_cols=153 Identities=17% Similarity=0.146 Sum_probs=77.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCC
Q 048533 383 YCKIGDTASAMKVKNRMLEAGLMLDQFTYKALI--HGFCKAKEMDIAKELLFGMLDAGFSPSYCSY--SWLVDGYCNKNN 458 (591)
Q Consensus 383 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~ 458 (591)
+...|+.+....++..+.+.. +......+. -++...|+.+.+..+++.+.... .|....- ..+.-+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 445566666666666555431 223332233 33445677777777777766531 1221111 123445667777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCh-hHHHHHHH
Q 048533 459 EEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEP-KACSDILD 537 (591)
Q Consensus 459 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~ 537 (591)
.....+++..+.+.. ..+..-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .+|+..+.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 776666777777642 1122222222223334566666666666665542 34443333444444444443 46667777
Q ss_pred HHHH
Q 048533 538 DMYR 541 (591)
Q Consensus 538 ~~~~ 541 (591)
.+..
T Consensus 654 ~L~~ 657 (963)
T 4ady_A 654 PLTK 657 (963)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 7754
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.72 E-value=2.3 Score=41.29 Aligned_cols=49 Identities=8% Similarity=0.095 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHhhc-------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 284 GRMREARRLFRDIKG-------ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAK 332 (591)
Q Consensus 284 g~~~~A~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 332 (591)
|+++.|++.+..+.+ ..........++..|...|+++...+.+..+.+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk 85 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK 85 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 567777776655542 1223445666777777788887777766655543
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.38 E-value=1.8 Score=44.74 Aligned_cols=144 Identities=13% Similarity=0.030 Sum_probs=80.5
Q ss_pred CCChHHHHHHHHhhhcCCCC-hhHHHHHHHHHhhhCCCCCCCHHHHHH--HHHHHHcCC-CchHHHHHHHHHHHc-----
Q 048533 37 SLTSTAIHKVLLNLYNCCHI-PSLSCAFFKWAESAVPNYKHSLQSHWT--MIHILTKNK-HFKSAQNMLEKIALR----- 107 (591)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~~~-~~~A~~~f~~~~~~~p~~~~~~~~~~~--l~~~~~~~g-~~~~A~~~~~~~~~~----- 107 (591)
...++++...|..+..-.++ .+.|+.+|+...+..|. ..++.. ++..+.+.+ +--+|++++.+..+.
T Consensus 244 t~v~N~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~----~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~ 319 (754)
T 4gns_B 244 TIVNNYLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPI----HDIYYKTAMITILDHIETKELDMITILNETLDPLLSLL 319 (754)
T ss_dssp CSSSSHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHcccccHHHHHHHHHHHHHhhCCc----hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhh
Confidence 33455555555555443444 57899999998887764 333332 333333333 233466665554431
Q ss_pred --CCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHH
Q 048533 108 --DFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVW 185 (591)
Q Consensus 108 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 185 (591)
-...+..... +. +....++..-+..+...|+++-|+++-.+.....+. +-.+|..|..+|...|+++.|+
T Consensus 320 ~~l~~~~~~~~~-~~------~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~AL 391 (754)
T 4gns_B 320 NDLPPRDADSAR-LM------NCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKAL 391 (754)
T ss_dssp HTCSSCCHHHHH-HH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhccccccccc-cc------CcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHH
Confidence 0000000000 00 001123333455667778888888888887776544 6778888888888888888888
Q ss_pred HHHHHHH
Q 048533 186 KVYKKMV 192 (591)
Q Consensus 186 ~~~~~~~ 192 (591)
-.++.+.
T Consensus 392 LtLNScP 398 (754)
T 4gns_B 392 FAINSMP 398 (754)
T ss_dssp HHHHHSC
T ss_pred HHHhcCC
Confidence 7777764
No 241
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.21 E-value=1.4 Score=33.77 Aligned_cols=140 Identities=14% Similarity=0.110 Sum_probs=83.2
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 048533 246 CKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRL 325 (591)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 325 (591)
.-.|..++..++..+.... .+..-+|.++--....-+.+-..+.++.+-.. -|. ..+|+.......
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-FDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCG----------GGCSCTHHHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-cCc----------HhhhcHHHHHHH
Confidence 3457777777777777653 35566666666666666666666666666431 111 124444444444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 048533 326 REVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLM 405 (591)
Q Consensus 326 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 405 (591)
+-.+-. +.......+..+...|+-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.++-+.|++
T Consensus 84 ~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 84 GVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 433221 3344555666666777777777777775442 3556666777777777777777777777777666643
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.06 E-value=2.5 Score=40.14 Aligned_cols=72 Identities=8% Similarity=0.021 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHHHHH
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQ-----LGVVANIHLYNV 205 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 205 (591)
...++..+...|++.+|+..+..+...++- +...|..++.++.+.|+..+|++.|+.+.+ .|+.|+..+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 445667788899999999999998887665 788899999999999999999999988754 588887766443
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.53 E-value=0.62 Score=33.47 Aligned_cols=63 Identities=14% Similarity=0.100 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 493 KVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSA 556 (591)
Q Consensus 493 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 556 (591)
+.=+.++-++.+...++.|++.+..+.+++|.+.+++..|.++++-+..+- .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 344556666666666677777777777777777777777777777666652 122334554443
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.21 E-value=1.6 Score=33.47 Aligned_cols=71 Identities=10% Similarity=0.132 Sum_probs=49.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 473 GLCVDVSVYRALIRRFCKKEKV---DYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 473 ~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
+..|++.+--.+..++.++.+. .+++.+++.+.+.+..-.-..+-.+.-++.+.|++++|.++.+.+++..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 4456777777777777777654 4677777777765421123566677778888888888888888888854
No 245
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=92.17 E-value=1.6 Score=33.74 Aligned_cols=107 Identities=14% Similarity=0.275 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 048533 481 YRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGE--PKACSDILDDMYRRRLMITLKIYRSFSASY 558 (591)
Q Consensus 481 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 558 (591)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...|+.+.......+-+.+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~ 88 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 88 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 456777788888888888888887521111 12334455555555432 456778888888877665544433333333
Q ss_pred hcch----------hHHHHHHHHHHhcCCCChHHHHHHHh
Q 048533 559 AKDN----------EILDLFWSHVVDRGLMSKHIFKEMQL 588 (591)
Q Consensus 559 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (591)
.... +....|..+++..|.++.++.+.+..
T Consensus 89 ~~l~Dl~lDiP~a~~~l~~~v~~ai~~g~l~~~~~~~~p~ 128 (129)
T 2nsz_A 89 NEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPS 128 (129)
T ss_dssp HHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHTCTT
T ss_pred hhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHhhCCC
Confidence 3322 33346888899999999998887654
No 246
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.13 E-value=6.7 Score=35.57 Aligned_cols=82 Identities=16% Similarity=0.128 Sum_probs=47.7
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccC
Q 048533 85 IHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPH 164 (591)
Q Consensus 85 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 164 (591)
+..-...|++=+|.+.++.+..+ |.+++++++|++++..-.
T Consensus 20 l~~~I~~G~yYEAhQ~~Rtl~~R--------------------------------y~~~~~~~eAidlL~~ga------- 60 (312)
T 2wpv_A 20 FENKIKAGDYYEAHQTLRTIANR--------------------------------YVRSKSYEHAIELISQGA------- 60 (312)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--------------------------------HHHTTCHHHHHHHHHHHH-------
T ss_pred HHHHhhccChHHHHHHHHHHHHH--------------------------------HHHhcCHHHHHHHHHHHH-------
Confidence 34445557777777777666543 777788888887764432
Q ss_pred HHhHHHHHHHHHhcCChhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 048533 165 LHACTVLLNSLAKDRLTDM----VWKVYKKMVQLGVVANIHLYNVLIHACCKS 213 (591)
Q Consensus 165 ~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 213 (591)
..+.+.|+... |.-+.+-..+.+.+++......++..+...
T Consensus 61 --------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 61 --------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp --------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred --------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 22333444433 333445555566677766666666655543
No 247
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.06 E-value=3.4 Score=32.11 Aligned_cols=69 Identities=9% Similarity=0.115 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 475 CVDVSVYRALIRRFCKKEKV---DYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 475 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
.|+..+-..+.+++.++.+. .+++.+++.+...+..-.-...-.+.-++.+.|++++|+++.+.+++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 56777777777777777654 4677777777764322123455567778888888888888888888854
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.50 E-value=4 Score=31.74 Aligned_cols=70 Identities=17% Similarity=0.129 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHcCCCch---HHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHH
Q 048533 76 HSLQSHWTMIHILTKNKHFK---SAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQV 152 (591)
Q Consensus 76 ~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 152 (591)
.+..+.+..+-++.++.+.. +++.+++.+.+.+ +....+.+..++.++.+.|++.+|++.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~-----------------~~~~RdcLYyLAvg~ykl~~Y~~Ar~y 99 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-----------------ESRRRECLYYLTIGCYKLGEYSMAKRY 99 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-----------------CSTHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-----------------ccchhHHHHHHHHHHHHhhhHHHHHHH
Confidence 47888889998999987655 5788888877643 235667889999999999999999999
Q ss_pred HHHHhhCCCc
Q 048533 153 FDQMRVHNLM 162 (591)
Q Consensus 153 ~~~~~~~~~~ 162 (591)
.+.+++..+.
T Consensus 100 ~d~lL~~eP~ 109 (144)
T 1y8m_A 100 VDTLFEHERN 109 (144)
T ss_dssp HHHHHHTCCC
T ss_pred HHHHHhcCCC
Confidence 9999998654
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.78 E-value=1.6 Score=41.48 Aligned_cols=71 Identities=7% Similarity=-0.066 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHHHH
Q 048533 481 YRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYR-----RRLMITLKIYR 552 (591)
Q Consensus 481 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 552 (591)
...++..+...|+++++...+..+... -+.+...|..++.++.+.|+..+|.+.|+++.+ .|+.|++.+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 344566667777777777777777664 233556777777888888888888777777654 27777766543
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.56 E-value=11 Score=41.88 Aligned_cols=128 Identities=14% Similarity=0.137 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHH
Q 048533 238 YNTLIALYCKKGMHYEALAVQDRMEREGISPDI----VTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGY 313 (591)
Q Consensus 238 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~ 313 (591)
|..++..+.+.|.++.+.+.-...++....-+. ..|..+...+...|++++|...+-.+.....-......++..+
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~l 981 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQL 981 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 556666676777777776666555443211111 2456667777777777777777766654333344555555555
Q ss_pred HhcC------------CHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHH
Q 048533 314 CRAN------------DLEEALRLREVMAAK--GVYPGVVTYNSILRKLCKEGRIRD-ANRLLNEMN 365 (591)
Q Consensus 314 ~~~g------------~~~~a~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~ 365 (591)
|..| ..++..+++....+. .....+.-|..|-.-+...|++.. |.-+|+.+.
T Consensus 982 ce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 982 TKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 5444 344555555432221 111122335555555566666654 444555543
No 251
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.46 E-value=6 Score=40.98 Aligned_cols=128 Identities=9% Similarity=0.092 Sum_probs=80.6
Q ss_pred HHHHHHHHcCCC-chHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcC-ChHHHHHHHHHHhhC
Q 048533 82 WTMIHILTKNKH-FKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLK-MTQDGLQVFDQMRVH 159 (591)
Q Consensus 82 ~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~ 159 (591)
..++..+...|+ ++.|+.+|+++....+.....+...+ +..+.+.+ +--+|++++.+.++.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~-----------------i~~~~~~~~~Ev~av~ll~~~l~~ 314 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAM-----------------ITILDHIETKELDMITILNETLDP 314 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHH-----------------HHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHH-----------------HHHHHHhhhhhHHHHHHHHHHHHH
Confidence 356777777777 47799999999887643322211111 11122222 223456666555421
Q ss_pred -------CCccC----------HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHH
Q 048533 160 -------NLMPH----------LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKL 222 (591)
Q Consensus 160 -------~~~~~----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 222 (591)
-...+ ....+.-...|...|+++.|+++-++.....+. +-.+|..|..+|.+.|+++.|+-.
T Consensus 315 ~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLt 393 (754)
T 4gns_B 315 LLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFA 393 (754)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHH
Confidence 11111 112333345667789999999999998886544 677899999999999999999988
Q ss_pred HHHHh
Q 048533 223 LCEME 227 (591)
Q Consensus 223 ~~~~~ 227 (591)
+..++
T Consensus 394 LNScP 398 (754)
T 4gns_B 394 INSMP 398 (754)
T ss_dssp HHHSC
T ss_pred HhcCC
Confidence 88875
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.48 E-value=0.91 Score=36.41 Aligned_cols=115 Identities=13% Similarity=0.075 Sum_probs=62.6
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhh---CCCC-CCC--HHHHHHHHHHHHcCCCchHHHHHHHHHHHcC--CCCchH
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESA---VPNY-KHS--LQSHWTMIHILTKNKHFKSAQNMLEKIALRD--FLSTPS 114 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~---~p~~-~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 114 (591)
+..-+..++.+ +.++-|.-+...+... .|+. ++. ..+...++.++...|+|.+|...|+.+++.. ......
T Consensus 23 l~dqik~L~d~-~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 23 VIDHVRDMAAA-GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHh-hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33444444443 7788887777775442 2221 000 1345578999999999999999999975521 110000
Q ss_pred HHHHHHhhcC------CCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048533 115 VLNALVKIHD------DPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVH 159 (591)
Q Consensus 115 ~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 159 (591)
. .+...... +...+.++-..+..+|.+.+++++|+.+++.+...
T Consensus 102 ~-~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 102 V-RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred c-cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 0 00000000 11122345566777777777777777777765443
No 253
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=89.08 E-value=3.5 Score=31.52 Aligned_cols=63 Identities=14% Similarity=0.099 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 048533 494 VDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSAS 557 (591)
Q Consensus 494 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 557 (591)
.=+.++-++.+...++.|++.+....+++|.+.+|+..|.++++-...+- .+...+|..+++-
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqE 131 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHH
Confidence 34566666677777788888888888888888888888888888877762 2334456655543
No 254
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.70 E-value=14 Score=33.74 Aligned_cols=83 Identities=10% Similarity=0.020 Sum_probs=46.9
Q ss_pred HHHHHcCCCc---hHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 85 IHILTKNKHF---KSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 85 ~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
+......|+| =+|.+.++.+..+ |.+++++++|++++..-.
T Consensus 19 l~~~I~~G~y~~~YEAHQ~~RTi~~R--------------------------------y~~~k~y~eAidLL~~GA---- 62 (336)
T 3lpz_A 19 LQRRIAEGQPEEQYEAAQETRLVAAR--------------------------------YSKQGNWAAAVDILASVS---- 62 (336)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHH--------------------------------HHHTTCHHHHHHHHHHHH----
T ss_pred HHHHHhCCCCccccHHHHHHHHHHHH--------------------------------HHhhcCHHHHHHHHHHHH----
Confidence 3445556777 6777777666543 777788888887654321
Q ss_pred ccCHHhHHHHHHHHHhcCChhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 048533 162 MPHLHACTVLLNSLAKDRLTDM----VWKVYKKMVQLGVVANIHLYNVLIHACCKSS 214 (591)
Q Consensus 162 ~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 214 (591)
..+.+.|+... +.-+.+-..+.+++++......++..+....
T Consensus 63 -----------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 63 -----------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp -----------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred -----------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 22333344333 3333344455666666666666665555443
No 255
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.50 E-value=3 Score=30.04 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 459 EEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGN 507 (591)
Q Consensus 459 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 507 (591)
.-+..+-++.+...++.|++.+..+.+++|.+.+++..|.++++-+..+
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3344555555555556666666666666666666666666666666543
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.07 E-value=4.8 Score=30.88 Aligned_cols=71 Identities=14% Similarity=0.018 Sum_probs=41.0
Q ss_pred CcCcccHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 048533 232 RADLFTYNTLIALYCKKGMH---YEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPN 302 (591)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 302 (591)
.|+..+-.....++++..+. ..++.+++.+.+.+..-....+..+.-++.+.|++++|.++.+.+....|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 34555555555555555443 345666666665542223445555666677777777777777777666665
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.04 E-value=1.3 Score=42.90 Aligned_cols=102 Identities=8% Similarity=-0.133 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
..++..++..+.+.|+++.|.+.|.++......+ ....+++...++.+...+++..+...+.++.
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~---------------~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIST---------------GAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC---------------CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh---------------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4567789999999999999999999988753322 3344677788889999999999999998876
Q ss_pred hC---CCccCHHh--HHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 158 VH---NLMPHLHA--CTVLLNSLAKDRLTDMVWKVYKKMVQL 194 (591)
Q Consensus 158 ~~---~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~ 194 (591)
.. +..|+... ...-+..+...+++..|-..|-+....
T Consensus 196 ~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 196 SMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 43 32233221 111222334578899888888776543
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.76 E-value=4.1 Score=32.66 Aligned_cols=64 Identities=13% Similarity=-0.045 Sum_probs=44.8
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHhhCC-CccC-------HHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048533 130 SHVLSWLVIFYANLKMTQDGLQVFDQMRVHN-LMPH-------LHACTVLLNSLAKDRLTDMVWKVYKKMVQ 193 (591)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 193 (591)
...+..-+......+.++.|+-+.+.+.... ..|+ ..++..+..++...|++.+|...|++.++
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3445555666778889999988887765431 1222 23667778888899999999999988654
No 259
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=86.61 E-value=8.4 Score=35.72 Aligned_cols=107 Identities=14% Similarity=0.276 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 048533 480 VYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGE--PKACSDILDDMYRRRLMITLKIYRSFSAS 557 (591)
Q Consensus 480 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 557 (591)
....++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+...+++..+...|+.+.......+.+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3577888899999999999999998632111 12344555556655443 45688899999988887665555555555
Q ss_pred hhcch----------hHHHHHHHHHHhcCCCChHHHHHHH
Q 048533 558 YAKDN----------EILDLFWSHVVDRGLMSKHIFKEMQ 587 (591)
Q Consensus 558 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (591)
+.... .+...|..+++..|.++..+.+.+.
T Consensus 298 l~~ldDl~lDiP~A~~~la~~varai~~g~l~~~f~~~~p 337 (358)
T 3eiq_C 298 YNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCP 337 (358)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHHHHTTCC
T ss_pred HHhccHhhcccccHHHHHHHHHHHHHHCCCCCHHHHHhCc
Confidence 54433 3334688888999999998877664
No 260
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=86.29 E-value=38 Score=36.04 Aligned_cols=267 Identities=11% Similarity=0.044 Sum_probs=141.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhc-CC--------CChhhHHHHHH
Q 048533 243 ALYCKKGMHYEALAVQDRMEREGISPDIV--TYNSLIHGFCREGRMREARRLFRDIKG-AT--------PNHVTYTTLID 311 (591)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~--------~~~~~~~~li~ 311 (591)
-+....|+.++++.+++...-.+-..+.. .=..+.-+....|...++..++..... .. +....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34567788888888887765421112322 223334445556665667777766543 11 11111222222
Q ss_pred HH--HhcCCHHHHHHHHHHHHHCCCCCCHHH--HH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHH--HHH
Q 048533 312 GY--CRANDLEEALRLREVMAAKGVYPGVVT--YN--SILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLI--NAY 383 (591)
Q Consensus 312 ~~--~~~g~~~~a~~~~~~~~~~~~~p~~~~--~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li--~~~ 383 (591)
++ ...++ +++.+.+..+.... +... .. .+...+.-.|+.+....++..+.+.. +......+. -++
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGl 534 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLAL 534 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHH
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHh
Confidence 33 33344 45555555555432 2221 12 22223445677777778887776642 333333333 344
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHH-HHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048533 384 CKIGDTASAMKVKNRMLEAGLMLDQF-TYK---ALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNE 459 (591)
Q Consensus 384 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 459 (591)
...|+.+.+..+.+.+... .++. -|. .+.-+|+..|+.....+++..+.... ..+..-...+.-++...|+.
T Consensus 535 l~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 535 INYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp HTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSC
T ss_pred hhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCH
Confidence 4678998888888888764 2322 232 34456778899888888999888642 12222222233344456777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 048533 460 EALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKV-DYAQRLFNLMQGNGILGDSVIYTSLAYAYW 524 (591)
Q Consensus 460 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 524 (591)
+.+.++++.+.+.+ .|....-..+.-+....|.. .+++..+..+.. .+|..+-..-+-++.
T Consensus 611 e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 611 TTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALS 672 (963)
T ss_dssp SSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHH
Confidence 77777777666543 33333333333333444443 577888888874 335444433333443
No 261
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=86.00 E-value=31 Score=34.87 Aligned_cols=315 Identities=9% Similarity=0.026 Sum_probs=157.0
Q ss_pred HHHHHHHHhccccchhcC--CCCCCCCChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcC
Q 048533 14 IKTISAIMLKGHWAKLLN--PNIASSLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKN 91 (591)
Q Consensus 14 ~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~ 91 (591)
...+...+.++.|..... +.+...|-..++..-..........+.+...++. .+|+.|........-...+.+.
T Consensus 10 ~~~a~~a~~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l~~~~~~ev~~Fl~----~~~~~p~~~~Lr~~~l~~l~~~ 85 (618)
T 1qsa_A 10 YAQIKQAWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVR----ANPTLPPARTLQSRFVNELARR 85 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTGGGCCHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCcccCCHHHHHHHHH----HCCCChhHHHHHHHHHHHHHhC
Confidence 444555677777764333 2333333344443322222221224454444433 3776444444444556667777
Q ss_pred CCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHH
Q 048533 92 KHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVL 171 (591)
Q Consensus 92 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 171 (591)
+++......+. .+|.+...-.....+....|+..+|......+-..+.. ....+..+
T Consensus 86 ~~w~~~l~~~~----------------------~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l 142 (618)
T 1qsa_A 86 EDWRGLLAFSP----------------------EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKL 142 (618)
T ss_dssp TCHHHHHHHCC----------------------SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHH
T ss_pred CCHHHHHHhcc----------------------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHH
Confidence 77666555432 22444455566677788888887787777776655533 45577888
Q ss_pred HHHHHhcCChhH--HHHHHHHHHHCCCC-----------CCHH-HHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcc-
Q 048533 172 LNSLAKDRLTDM--VWKVYKKMVQLGVV-----------ANIH-LYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLF- 236 (591)
Q Consensus 172 l~~~~~~~~~~~--a~~~~~~~~~~~~~-----------~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~- 236 (591)
+..+.+.|.... ..+=++.+...|-. ++.. ....++... .+...+....... .++..
T Consensus 143 ~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~---~~p~~~~~~~~~~-----~~~~~~ 214 (618)
T 1qsa_A 143 FSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLA---NNPNTVLTFARTT-----GATDFT 214 (618)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHH---HCGGGHHHHHHHS-----CCCHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHH---hChHhHHHHHhcc-----CCChhh
Confidence 888887665433 33333333333211 1110 011111111 1122222211110 11111
Q ss_pred --cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHH
Q 048533 237 --TYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYN----SLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLI 310 (591)
Q Consensus 237 --~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li 310 (591)
.+...+.-+. ..+.+.|...+....+.. ..+..... .+.......+...++...+........+.....-.+
T Consensus 215 ~~~~~~~~~rla-r~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 292 (618)
T 1qsa_A 215 RQMAAVAFASVA-RQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRV 292 (618)
T ss_dssp HHHHHHHHHHHH-HHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHH-hcCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHH
Confidence 1111222222 336788888887776532 22332222 222223333424455555555443344444444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 311 DGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNE 366 (591)
Q Consensus 311 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 366 (591)
....+.|+++.|...|+.|..... .......-+..++...|+.++|..+|..+..
T Consensus 293 r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 293 RMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 555567888888888887765321 2344455566677778888888888887764
No 262
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=84.84 E-value=6.3 Score=31.54 Aligned_cols=137 Identities=15% Similarity=0.124 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhccccchhcC--CCCCC-CCChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 048533 12 KFIKTISAIMLKGHWAKLLN--PNIAS-SLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHIL 88 (591)
Q Consensus 12 ~~~~~i~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~ 88 (591)
++.-.||-+++=..+.+..= ..+.+ .+.-..+-.+..-+ .|.+..|+-.+.. . + +..+..--.-.|
T Consensus 4 ~~~~kI~Ks~kY~dYdt~~fLsa~L~~~~~eY~lL~~I~Lyy---ngEY~R~Lf~L~~----l-N---T~Ts~YYk~LCy 72 (242)
T 3kae_A 4 KLIGKICKSIRYRDYETAIFLAACLLPCKPEYRMLMSIVLYL---NGEYTRALFHLHK----L-N---TCTSKYYESLCY 72 (242)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHC----CTHHHHHHHHHH---TTCHHHHHHHHHT----C-C---BHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHccCChHHHhhhhhhhhh---cchHhHHHHHHHh----c-c---hHHHHHHHHHHH
Confidence 45566777766555443111 11111 22233444443333 3888888777654 2 2 444444445578
Q ss_pred HcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048533 89 TKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVH 159 (591)
Q Consensus 89 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 159 (591)
.+..++..|+..++.+....+..++.+-..+--+.-++.+.+-.++.++..+.+.|+-++|+..+..--..
T Consensus 73 ~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 73 KKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 89999999999999999766655543333333444456666667777788888889989988887665443
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.53 E-value=11 Score=33.14 Aligned_cols=55 Identities=15% Similarity=0.012 Sum_probs=49.9
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFL 110 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 110 (591)
+.|+++.|+......++..|. +......+++.|+-.|++++|.+-++...+.++.
T Consensus 9 ~~g~L~~al~~~~~~VR~~P~---da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKASPK---DASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred hCCCHHHHHHHHHHHHHhCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 458999999999999999988 8999999999999999999999999998887654
No 264
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=83.71 E-value=7 Score=31.06 Aligned_cols=105 Identities=14% Similarity=0.288 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 048533 481 YRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGE--PKACSDILDDMYRRRLMITLKIYRSFSASY 558 (591)
Q Consensus 481 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 558 (591)
...++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+.+..++..+...|+.+.......+-+.+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl 90 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 90 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 456677777778888888888777421111 12333444555554322 445677777777777654444433333333
Q ss_pred hcch----------hHHHHHHHHHHhcCCCChHHHHHH
Q 048533 559 AKDN----------EILDLFWSHVVDRGLMSKHIFKEM 586 (591)
Q Consensus 559 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 586 (591)
.... +....|..+++..|.++.+....+
T Consensus 91 ~~ldDl~lDiP~A~~~la~~v~~ai~~g~l~~~~~~~~ 128 (152)
T 2ion_A 91 NEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLC 128 (152)
T ss_dssp HHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHTC
T ss_pred HhChHhccCccchHHHHHHHHHHHHHCCCCCHHHHHhC
Confidence 3322 333467888888898888877665
No 265
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.67 E-value=12 Score=28.67 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 048533 460 EALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLA 520 (591)
Q Consensus 460 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 520 (591)
-+..+-++.+...++.|++.+....+++|.+.+++..|.++++-...+ ..+...+|..++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 344555555556666677777777777777777777777777766654 233344555544
No 266
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=81.26 E-value=31 Score=31.20 Aligned_cols=106 Identities=14% Similarity=0.278 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 048533 480 VYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGE--PKACSDILDDMYRRRLMITLKIYRSFSAS 557 (591)
Q Consensus 480 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 557 (591)
....++.-|...|+.++|.+.++++..-... ...+...+..++-+.++ .+...+++..+.+.|+.+.......+.+.
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~v 246 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERI 246 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3567788899999999999999998631111 12334455555555433 45678899999988877555554444444
Q ss_pred hhcch----------hHHHHHHHHHHhcCCCChHHHHHH
Q 048533 558 YAKDN----------EILDLFWSHVVDRGLMSKHIFKEM 586 (591)
Q Consensus 558 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 586 (591)
+.... .+...|..+++..|.++.+..+.+
T Consensus 247 l~~l~Dl~lDiP~A~~~la~~v~~ai~~g~l~~~~~~~~ 285 (307)
T 2zu6_B 247 YNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLC 285 (307)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHHHHHTS
T ss_pred HHhccHhhcccccHHHHHHHHHHHHHHCCCCCHHHHHhC
Confidence 44332 333468899999999998877654
No 267
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.15 E-value=18 Score=34.81 Aligned_cols=61 Identities=7% Similarity=-0.076 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhC--CCccCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVH--NLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMV 192 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 192 (591)
+...++..|.+.|++++|.+.|.++... +...-...+-..++.+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4455555666666666666666555543 112223444555555555555555555555543
No 268
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=78.58 E-value=38 Score=30.63 Aligned_cols=166 Identities=15% Similarity=0.077 Sum_probs=89.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHHHHH
Q 048533 273 YNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRL----REVMAAKGVYPGVVTYNSILRKL 348 (591)
Q Consensus 273 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~~~~~~~~p~~~~~~~ll~~~ 348 (591)
|.++..-|.+.+++++|++++..-. ..+.+.|+...|-++ ++...+.+.+++......++..+
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga-------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGA-------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH-------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3344555777788888887765542 234455665555443 45555567777777777777666
Q ss_pred HhcCCHH-HHHHHHHHHH----hCC--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048533 349 CKEGRIR-DANRLLNEMN----EKK--IAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKA 421 (591)
Q Consensus 349 ~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 421 (591)
.....-+ .=.++++.++ +.| ..-++.....+...|.+.|++.+|...|- .+-.-|...+..++.-+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHHHHh
Confidence 5432111 1122222222 221 22367778888888888888888776653 11111345555555444443
Q ss_pred ---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048533 422 ---KEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFV 470 (591)
Q Consensus 422 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 470 (591)
|...++--. +-.. +-.|.-.|+...|..+++...
T Consensus 179 ~~~~~~~e~dlf--------------~~Ra-VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 179 VDDIEDSTVAEF--------------FSRL-VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp TTCCCHHHHHHH--------------HHHH-HHHHHHTTBHHHHHHHHHHHH
T ss_pred cCCCCcchHHHH--------------HHHH-HHHHHHhcCHHHHHHHHHHHH
Confidence 333222111 1111 223445678888888777664
No 269
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=76.96 E-value=44 Score=30.50 Aligned_cols=166 Identities=15% Similarity=0.060 Sum_probs=88.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 274 NSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRL----REVMAAKGVYPGVVTYNSILRKLC 349 (591)
Q Consensus 274 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~~~~~~~~p~~~~~~~ll~~~~ 349 (591)
.++..-|.+.+++++|++++..-. ..+.+.|+...+-++ ++...+.++++|......++..+.
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~GA-------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASVS-------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHH-------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344455677788888877765432 233444555444443 344445566667666666666655
Q ss_pred hcCCHH-HHHHHHHHHH----hCC--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048533 350 KEGRIR-DANRLLNEMN----EKK--IAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAK 422 (591)
Q Consensus 350 ~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 422 (591)
....-+ .=..+.+.++ +.| ..-|+.....+...|.+.+++.+|...|- .|-.+++..|..++.-+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTS
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhc
Confidence 443211 1112222221 111 23467777888888888888888877662 232333466665555554443
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048533 423 EMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVS 471 (591)
Q Consensus 423 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 471 (591)
...+ ++..+-.. +-.|.-.++...|..+++...+
T Consensus 182 ~~~e--------------~dlfiaRa-VL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 182 ESHT--------------APLYCARA-VLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp CGGG--------------HHHHHHHH-HHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcc--------------HHHHHHHH-HHHHHHhCCHHHHHHHHHHHHH
Confidence 3211 12222222 2334556788888777666553
No 270
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=75.41 E-value=26 Score=32.47 Aligned_cols=69 Identities=10% Similarity=0.120 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcchh----HHHHHHHHHHhcCCCChHHHH
Q 048533 515 IYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNE----ILDLFWSHVVDRGLMSKHIFK 584 (591)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 584 (591)
....++.-|...|+.++|.+.++++....+.+ ......+..++.+.++ ..-.+..++...|.++.+.|.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~ 291 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 291 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 35778888999999999999999997533332 3345667777776532 223567778889999877644
No 271
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=75.15 E-value=74 Score=32.17 Aligned_cols=248 Identities=12% Similarity=0.031 Sum_probs=138.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 048533 136 LVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSD 215 (591)
Q Consensus 136 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 215 (591)
-+..+.+.+++...+..+.. .+.+...-.....+....|+...|......+-..|.. ....+..++..+.+.|.
T Consensus 78 ~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 78 FVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCC
Confidence 44556677888777765442 2335666667778888889988888877777666543 55667777877777665
Q ss_pred hhh--HHHHHHHHhhCC-----------CCcCcccHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHH---HHHHHH
Q 048533 216 VDK--VEKLLCEMEFKD-----------VRADLFTYNTLIALYCK-KGMHYEALAVQDRMEREGISPDIVT---YNSLIH 278 (591)
Q Consensus 216 ~~~--a~~~~~~~~~~~-----------~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~ 278 (591)
+.. ...=++.+...| ++++. ..++..+.. ..+...+...... +.++... +...+.
T Consensus 152 lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~---~~~a~~~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~ 223 (618)
T 1qsa_A 152 QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADY---QTIASAIISLANNPNTVLTFART-----TGATDFTRQMAAVAFA 223 (618)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGG---HHHHHHHHHHHHCGGGHHHHHHH-----SCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHH---HHHHHHHHHHHhChHhHHHHHhc-----cCCChhhHHHHHHHHH
Confidence 433 222223333322 11111 111111111 0122222222111 1222221 111223
Q ss_pred HHHhcCCHHHHHHHHHHhhc-CCCChhh----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048533 279 GFCREGRMREARRLFRDIKG-ATPNHVT----YTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGR 353 (591)
Q Consensus 279 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~----~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 353 (591)
-+.+ .+.+.|...+..... ...+... +..++..+...+...++...+....... ++.......+....+.|+
T Consensus 224 rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d 300 (618)
T 1qsa_A 224 SVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGD 300 (618)
T ss_dssp HHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTC
T ss_pred HHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCC
Confidence 3333 478999999988753 2223222 2333334444553556666776655442 344444445555567899
Q ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048533 354 IRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLE 401 (591)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 401 (591)
++.|...|+.|..... .......=+..++...|+.++|..+|..+..
T Consensus 301 ~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 301 RRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999998866422 2344445566778889999999999988764
No 272
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=73.34 E-value=62 Score=30.46 Aligned_cols=294 Identities=10% Similarity=0.019 Sum_probs=139.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCC---C---ChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHH---
Q 048533 272 TYNSLIHGFCREGRMREARRLFRDIKGAT---P---NHVTYTTLIDGYCRA-NDLEEALRLREVMAAKGVYPGVVTY--- 341 (591)
Q Consensus 272 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~---~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~--- 341 (591)
+...+...|.+.|+.++..+++......- + .......+++.+... +..+.-.++..+..+..-. ...+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34456666666777766666666654311 1 122334555555443 2233333333333221000 11122
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHH
Q 048533 342 ---NSILRKLCKEGRIRDANRLLNEMNEKKIAPD-----NVTCNTLINAYCKIGDTASAMKVKNRMLEA--GLMLDQFTY 411 (591)
Q Consensus 342 ---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~ 411 (591)
..++..|...|++.+|.+++..+.+.=...| ...+..-+..|...++..++...+...... .+.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2566777888888888888777765211111 133555567778888888888888776443 222444332
Q ss_pred HHH----HHHHH-hcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHH
Q 048533 412 KAL----IHGFC-KAKEMDIAKELLFGMLDAGFSPS------YCSYSWLVDGYCNKNNEEALLKLLD-EFVSRGLCVDVS 479 (591)
Q Consensus 412 ~~l----~~~~~-~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~ 479 (591)
..+ ...+. ..+++..|...|-+..+.-.... ...|..+.. . -.++..+...++. .....-..|+..
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a-L-l~~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK-I-MLGQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-H-HTTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH-H-HcCCHHHHHHHhccccccccCCccHH
Confidence 221 22345 67888888887777643100111 112222211 1 1222222222221 111111234555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhh
Q 048533 480 VYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYA 559 (591)
Q Consensus 480 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 559 (591)
.+..++.+|. .+++.+...+++..... +..|+.....+-..+.+. -.+.+.++.+. -+-.++..+...+.
T Consensus 258 ~l~~L~~a~~-~~dl~~f~~iL~~~~~~-l~~D~~l~~h~~~L~~~I-----r~~~L~~i~~p---YsrIsl~~iA~~l~ 327 (394)
T 3txn_A 258 AMKSVAEASH-KRSLADFQAALKEYKKE-LAEDVIVQAHLGTLYDTM-----LEQNLCRIIEP---YSRVQVAHVAESIQ 327 (394)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHSTTT-TTTSHHHHHHHHHHHHHH-----HHHHHHHHHTT---CSEEEHHHHHHHHT
T ss_pred HHHHHHHHHH-hCCHHHHHHHHHHHHHH-HhcChHHHHHHHHHHHHH-----HHHHHHHHhHh---hceeeHHHHHHHHC
Confidence 5666666544 46777766666655432 444543222111111000 00111112221 12234555566666
Q ss_pred cchhHHHHHHHHHHhcCCC
Q 048533 560 KDNEILDLFWSHVVDRGLM 578 (591)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~ 578 (591)
-..+..+.....|+.+|.+
T Consensus 328 ls~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 328 LPMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp CCHHHHHHHHHHHHHTTSS
T ss_pred cCHHHHHHHHHHHHHCCCe
Confidence 5666666677777777765
No 273
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=73.29 E-value=22 Score=25.55 Aligned_cols=79 Identities=15% Similarity=0.114 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHH
Q 048533 457 NNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDIL 536 (591)
Q Consensus 457 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 536 (591)
...++|..+-+-+...+. ...+-.+-+..+...|++++|..+.+.+. .||...|.++ +-.+.|-.+++..-+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLAL--CEYRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHH--HHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHHHH
Confidence 356777777776666532 22222222334567778877777665443 5677766655 445677777776666
Q ss_pred HHHHHCC
Q 048533 537 DDMYRRR 543 (591)
Q Consensus 537 ~~~~~~~ 543 (591)
.++..+|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 6666665
No 274
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=70.69 E-value=71 Score=30.05 Aligned_cols=240 Identities=12% Similarity=-0.011 Sum_probs=135.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCChHHH---
Q 048533 305 TYTTLIDGYCRANDLEEALRLREVMAAK-GVYPG---VVTYNSILRKLCKE-GRIRDANRLLNEMNEKKIAPDNVTC--- 376 (591)
Q Consensus 305 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~---~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~--- 376 (591)
+...+...|.+.|+.++..+++...... +..|. ......++..+... +..+.-.++..+..+.... ...+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4567888999999999999988776432 11122 23456677777654 3344444554444432100 11223
Q ss_pred ---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHH
Q 048533 377 ---NTLINAYCKIGDTASAMKVKNRMLEAGLMLD-----QFTYKALIHGFCKAKEMDIAKELLFGMLDA--GFSPSYCSY 446 (591)
Q Consensus 377 ---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~ 446 (591)
..++..|...|++.+|.+++..+.+.=...| ...+..-+..|...+++.++...+...... .+.+++.+.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2578889999999999999988876311112 345666677888999999999999887642 233444433
Q ss_pred HHH----HHHHH-hcCCHHHHHHHHHHHHHC-C-CC-C---CHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCcCHH
Q 048533 447 SWL----VDGYC-NKNNEEALLKLLDEFVSR-G-LC-V---DVSVYRALIRRFCKKEKVDYAQRLFN-LMQGNGILGDSV 514 (591)
Q Consensus 447 ~~l----~~~~~-~~g~~~~a~~~~~~~~~~-~-~~-~---~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~p~~~ 514 (591)
..+ +..+. ..+++..|...|-+..+. . .. | +...|.. +.+ .-.++..+...++. .....-..|...
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlv-L~a-Ll~~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYML-LCK-IMLGQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHH-HHTTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHH-HHH-HHcCCHHHHHHHhccccccccCCccHH
Confidence 222 33455 788999998888776532 1 11 1 1112222 222 22333333333222 211111245555
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 048533 515 IYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLK 549 (591)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 549 (591)
.+..++.+| ..+++.+...+++.... .+..|+.
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~ 290 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVI 290 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChH
Confidence 556666654 55677776666665433 2444554
No 275
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=68.44 E-value=31 Score=37.18 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=35.4
Q ss_pred CCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 048533 54 CHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIA 105 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 105 (591)
.+.++.|.++..| .|. +...-+.+++++...|++++|...|+++.
T Consensus 823 ~~~~~~a~eL~~~----~~~---t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 823 FKQYNACMQLIGW----LNS---DPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp TTCHHHHHHHGGG----CCS---SHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred hcHHHHHHHHHhh----cCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3677777776655 454 55566789999999999999999998865
No 276
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=68.01 E-value=21 Score=25.56 Aligned_cols=87 Identities=9% Similarity=-0.075 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcchhHHHHHHH
Q 048533 491 KEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNEILDLFWS 570 (591)
Q Consensus 491 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~ 570 (591)
....++|..+-+-+...+- ...+-..-+..+...|+|++|..+.+... .||...|-.|...-...+...+....
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEWHLGLGAALDRRLA 92 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHHhcccHHHHHHHHH
Q ss_pred HHHhcCCCChHHH
Q 048533 571 HVVDRGLMSKHIF 583 (591)
Q Consensus 571 ~~~~~~~~~~~~~ 583 (591)
.+-.+|-...+.|
T Consensus 93 ~la~sg~p~~q~F 105 (115)
T 2uwj_G 93 GLGGSSDPALADF 105 (115)
T ss_dssp HHHTCSSHHHHHH
T ss_pred HHHhCCCHHHHHH
No 277
>4fn6_A Thiaminase-2, thiaminase II; alpha-helix, vitamin B1, BI-functional enzyme, C of thiamine INTO HMP and THZ; HET: CME; 2.69A {Staphylococcus aureus}
Probab=67.62 E-value=45 Score=28.54 Aligned_cols=61 Identities=7% Similarity=0.013 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHhhhcchhHHHHHHHHHHhc
Q 048533 513 SVIYTSLAYAYWRAGEPKACSDILDDMYRR-RLMITLKIYRSFSASYAKDNEILDLFWSHVVDR 575 (591)
Q Consensus 513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~ 575 (591)
...|...++.|. ..+.++.+.+..+++. +...++.-...+...|.+.-+++-.||++.-..
T Consensus 157 ~~~y~~WI~~y~--~~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~F~~a~~lE~~Fwd~a~~~ 218 (229)
T 4fn6_A 157 EKDTAKWFDFYS--TEMDDIINVFESLMNKLAESMSDKELEQVKQVFLESCIHERRFFNMAMTL 218 (229)
T ss_dssp TSTHHHHHHHHT--TTTHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHh--HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 346889999999 6677776666666554 334577788899999999999999999998553
No 278
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=66.97 E-value=54 Score=27.25 Aligned_cols=56 Identities=13% Similarity=0.029 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHhCCCCcCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 048533 492 EKVDYAQRLFNLMQGNGILGDS-VIYTSLAYAYWRAGEPKACSDILDDMYRRRLMIT 547 (591)
Q Consensus 492 g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 547 (591)
+....+..+|..|..+|+--.. ..|......+...|++++|..+|+.-++.+-.|-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3355666666666655443332 4455666666666666666666666666655553
No 279
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=66.86 E-value=23 Score=31.13 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=33.3
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 048533 245 YCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPN 302 (591)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 302 (591)
..+.|+.+++++....-++.. +-|...-..++..+|-.|+++.|.+-++.+.+..|+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 345566666666665555543 225555566666666666666666666666554444
No 280
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.78 E-value=78 Score=30.95 Aligned_cols=143 Identities=11% Similarity=0.109 Sum_probs=45.3
Q ss_pred HHHHH--HHHHHHHcCCCchHHHHHHHHHHHcC-CCC-chHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHH----
Q 048533 78 LQSHW--TMIHILTKNKHFKSAQNMLEKIALRD-FLS-TPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDG---- 149 (591)
Q Consensus 78 ~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A---- 149 (591)
.++|. .+...+..++++++|.++-..+.... ... +...+. .....+|......+-..|+....
T Consensus 134 ~~~y~~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD---------~l~ak~~fY~s~~~e~~~~~~~~~~~~ 204 (523)
T 4b4t_S 134 INCFMHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLN---------LINAKLWFYIYLSHETLARSSEEINSD 204 (523)
T ss_dssp ------------------------------------------------------------------------------CH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHH---------HHHHHHHHHHHHHHHHhcccccccccc
Confidence 44454 34556778899999888766554210 000 000000 11223444444444445544332
Q ss_pred ------HH-HHHHHhh----CCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCH--HHHH-HHHHHHHccC
Q 048533 150 ------LQ-VFDQMRV----HNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGV-VANI--HLYN-VLIHACCKSS 214 (591)
Q Consensus 150 ------~~-~~~~~~~----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~-~ll~~~~~~g 214 (591)
.. ++..... ++..-....+|.+++.|...+.++.|..+..+..--.. .++. ..|. .+.+.+.-.+
T Consensus 205 ~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~ 284 (523)
T 4b4t_S 205 NQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQL 284 (523)
T ss_dssp HHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhc
Confidence 11 1222222 22222355678888888888888888888887741100 0111 1221 2345666778
Q ss_pred ChhhHHHHHHHHhhC
Q 048533 215 DVDKVEKLLCEMEFK 229 (591)
Q Consensus 215 ~~~~a~~~~~~~~~~ 229 (591)
++.+|.+.+......
T Consensus 285 ~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 285 DYSTANEYIIAAIRK 299 (523)
T ss_dssp CHHHHHHHHHHHTSS
T ss_pred cHHHHHHHHHHHHHh
Confidence 888888888777654
No 281
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=62.81 E-value=66 Score=26.76 Aligned_cols=56 Identities=21% Similarity=0.226 Sum_probs=40.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048533 316 ANDLEEALRLREVMAAKGVYPG-VVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAP 371 (591)
Q Consensus 316 ~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 371 (591)
++...++.++|..|...|+--. ...|......+...|++.+|..+|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4556788888888887765433 4456667777778888888888888888876666
No 282
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=61.93 E-value=39 Score=26.92 Aligned_cols=65 Identities=9% Similarity=-0.049 Sum_probs=46.0
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHcCCCC--chHHHHHHHh-hcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048533 82 WTMIHILTKNKHFKSAQNMLEKIALRDFLS--TPSVLNALVK-IHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRV 158 (591)
Q Consensus 82 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 158 (591)
+.-+..+...|+|-+|-+++|.+....... ...++..+++ + ..+....+.|+...|..++.+...
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~l------------AvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVA------------AGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHH------------HHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH------------HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334555667799999999999998865544 4445555554 2 233345678999999999998866
No 283
>3no6_A Transcriptional activator TENA; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis} SCOP: a.132.1.0
Probab=61.87 E-value=40 Score=29.35 Aligned_cols=61 Identities=10% Similarity=0.092 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHhhhcchhHHHHHHHHHHhc
Q 048533 513 SVIYTSLAYAYWRAGEPKACSDILDDMYRR-RLMITLKIYRSFSASYAKDNEILDLFWSHVVDR 575 (591)
Q Consensus 513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~ 575 (591)
...|...++.|. ..+.++.+.+..++++ +...++.-...+...|.+.-+++-.||++.-..
T Consensus 176 ~~~Y~~WI~~Y~--~ef~~~v~~~~~~ld~~~~~~s~~~~~~l~~~F~~a~~lE~~Fwd~ay~~ 237 (248)
T 3no6_A 176 ESVTSKWFQFYS--TEMDELVDVFDQLMDRLTKHCSETEKKEIKENFLQSTIHERHFFNMAYIN 237 (248)
T ss_dssp TSTTHHHHHHHH--HHTHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 346788999998 5666666655555554 444577888999999999999999999998553
No 284
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.89 E-value=55 Score=32.00 Aligned_cols=70 Identities=10% Similarity=-0.053 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048533 79 QSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRV 158 (591)
Q Consensus 79 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 158 (591)
.+++.+++.|...+.++.|..+..+..- |.+... ....+ ..+..++..+.-++++.+|.+.|..+.+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~~~s-n~q~~----------rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEY--PHTDVS-SSLEA----------RYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTTTSC-HHHHH----------HHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcC--CcccCC-HHHHH----------HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455789999999999999999988752 211100 01111 2456688999999999999999999887
Q ss_pred CCC
Q 048533 159 HNL 161 (591)
Q Consensus 159 ~~~ 161 (591)
.-+
T Consensus 299 kap 301 (523)
T 4b4t_S 299 KAP 301 (523)
T ss_dssp SCS
T ss_pred hCC
Confidence 644
No 285
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=57.75 E-value=37 Score=25.93 Aligned_cols=69 Identities=9% Similarity=0.097 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcch-hH---HHHHHHHHHhcCCCChHHHH
Q 048533 515 IYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDN-EI---LDLFWSHVVDRGLMSKHIFK 584 (591)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~ 584 (591)
....++.-|...|+.++|.+.++++...... .......+..++.+.+ .. .-.+...+...|.++.+.+.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~ 81 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 81 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 3567888899999999999999998643222 2335567777787764 32 23567777889999877654
No 286
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=53.43 E-value=42 Score=23.89 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=41.2
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048533 84 MIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRV 158 (591)
Q Consensus 84 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 158 (591)
-+..+...|+|-+|-+++|.+-...+.+....+..++++ ..+....+.|+. |..++.+...
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~------------Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILL------------AAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH------------HHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHH------------HHHHHHHHcCcH--HHHHHHHHHH
Confidence 344566779999999999999887654445556666653 122234457777 8888877665
No 287
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=53.22 E-value=60 Score=27.49 Aligned_cols=84 Identities=11% Similarity=0.103 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHH
Q 048533 57 PSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWL 136 (591)
Q Consensus 57 ~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 136 (591)
.+.++..|.. .+.|..+.+ |..+=-.|++ ..+++..+|..|...+.....+ ..|..-
T Consensus 100 LErc~~~F~~----~~rYknD~R-yLklWl~Ya~--~~~~p~~if~~L~~~~IG~~~A----------------lfYe~w 156 (223)
T 4aez_C 100 LERCTREFVR----NPLYKDDVR-YLRIWMQYVN--YIDEPVELFSFLAHHHIGQESS----------------IFYEEY 156 (223)
T ss_dssp HHHHHHHTTT----CGGGTTCHH-HHHHHHHHHT--TCSCHHHHHHHHHHTTCSTTBH----------------HHHHHH
T ss_pred HHHHHHHhcc----cccccCCHH-HHHHHHHHHH--ccCCHHHHHHHHHHCCcchhHH----------------HHHHHH
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCcc
Q 048533 137 VIFYANLKMTQDGLQVFDQMRVHNLMP 163 (591)
Q Consensus 137 ~~~~~~~~~~~~A~~~~~~~~~~~~~~ 163 (591)
+..+-..|++.+|.++|+.-++.+-.|
T Consensus 157 A~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 157 ANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCcc
No 288
>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A {Helicobacter pylori} PDB: 2rd3_A
Probab=53.16 E-value=52 Score=27.95 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHhhhcchhHHHHHHHHHH
Q 048533 513 SVIYTSLAYAYWRAGEPKACSDILDDMYRR-RLMITLKIYRSFSASYAKDNEILDLFWSHVV 573 (591)
Q Consensus 513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~ 573 (591)
...|...+..|... .+.++.+.+..+++. +...++.....+.+.|.+.-+++-.||++.-
T Consensus 159 ~~~y~~WI~~y~~~-~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~F~~a~~lE~~Fwd~a~ 219 (221)
T 3ibx_A 159 HAFYGHWIKGYSSK-EFQACVNWNINLLDSLTLASSKQEIEKLKEIFITTSEYEYLFWDMAY 219 (221)
T ss_dssp CTTTHHHHHHTTSH-HHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhCCH-HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34577888877642 355554444444443 4445777888999999999999999999864
No 289
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=53.04 E-value=81 Score=26.67 Aligned_cols=21 Identities=0% Similarity=-0.181 Sum_probs=11.5
Q ss_pred HHhcCChHHHHHHHHHHhhCC
Q 048533 140 YANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 140 ~~~~~~~~~A~~~~~~~~~~~ 160 (591)
-++.|+.+-+..+++.+.+.+
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 344566666666665554444
No 290
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=51.83 E-value=1.4e+02 Score=27.03 Aligned_cols=110 Identities=11% Similarity=-0.023 Sum_probs=63.9
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCC------CchHHHHHHHhhcCCCCCccchHHHHHHHHHhc---CChHHHHHHH
Q 048533 83 TMIHILTKNKHFKSAQNMLEKIALRDFL------STPSVLNALVKIHDDPDGNSHVLSWLVIFYANL---KMTQDGLQVF 153 (591)
Q Consensus 83 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~ 153 (591)
..+..+...|++++|+..|+.++..-+. ....-...++..+.. .+....++.-.+. .+....+++-
T Consensus 119 k~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrE-----Yilal~iEl~Rr~l~~~~~kR~lELA 193 (325)
T 3mv2_A 119 NEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETARE-----YILGLSIELERRSLKEGNTVRMLELA 193 (325)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHH-----HHHHHHHHHHHHTCCTTCHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 4567788899999999999998764211 111122223322111 1111122222232 3445556666
Q ss_pred HHHhhCCCccC--HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 154 DQMRVHNLMPH--LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV 197 (591)
Q Consensus 154 ~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (591)
--+..-+..|. ..++...+....+.+++..|..+-+++++.+..
T Consensus 194 AYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 194 AYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp HHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 55655555543 335566677777888888888888888887654
No 291
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=50.55 E-value=49 Score=26.12 Aligned_cols=69 Identities=9% Similarity=0.097 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcch-hH---HHHHHHHHHhcCCCChHHHH
Q 048533 515 IYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDN-EI---LDLFWSHVVDRGLMSKHIFK 584 (591)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~ 584 (591)
....++.-|...|+.++|.+.++++...... .......+..++.+.+ .. .-.+...+...|.++.+.+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~ 83 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 83 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 4567888999999999999999998643222 2335567777777753 32 23467777889999777653
No 292
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=50.29 E-value=62 Score=25.96 Aligned_cols=23 Identities=4% Similarity=0.280 Sum_probs=12.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 048533 483 ALIRRFCKKEKVDYAQRLFNLMQ 505 (591)
Q Consensus 483 ~l~~~~~~~g~~~~a~~~~~~~~ 505 (591)
.++.-|...|+.++|...++++.
T Consensus 15 ~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 15 PIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC
Confidence 44555555566666666555554
No 293
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=48.23 E-value=67 Score=27.62 Aligned_cols=88 Identities=8% Similarity=-0.012 Sum_probs=44.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhC--CCcc----CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 136 LVIFYANLKMTQDGLQVFDQMRVH--NLMP----HLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHA 209 (591)
Q Consensus 136 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 209 (591)
-++.+....++++|++++++..+. +.++ ........+..-...+.-..+..+.+.+.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 355688889999999988876542 1111 011122223333333333334444444422 2234444445556
Q ss_pred HHccCChhhHHHHHHHH
Q 048533 210 CCKSSDVDKVEKLLCEM 226 (591)
Q Consensus 210 ~~~~g~~~~a~~~~~~~ 226 (591)
+.+.|+.++|.++|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 66666666666655443
No 294
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=47.62 E-value=57 Score=28.49 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=10.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCC
Q 048533 172 LNSLAKDRLTDMVWKVYKKMVQLGVVA 198 (591)
Q Consensus 172 l~~~~~~~~~~~a~~~~~~~~~~~~~~ 198 (591)
+...+..|+.+ +++.+.+.|..+
T Consensus 43 L~~A~~~g~~~----~v~~Ll~~g~~~ 65 (285)
T 1wdy_A 43 LHNAVQMSRED----IVELLLRHGADP 65 (285)
T ss_dssp HHHHHHTTCHH----HHHHHHHTTCCT
T ss_pred HHHHHHcCCHH----HHHHHHHcCCCC
Confidence 34444556543 344444445443
No 295
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=46.12 E-value=55 Score=28.59 Aligned_cols=7 Identities=0% Similarity=-0.045 Sum_probs=3.0
Q ss_pred HHhcCCh
Q 048533 175 LAKDRLT 181 (591)
Q Consensus 175 ~~~~~~~ 181 (591)
.++.|+.
T Consensus 12 A~~~g~~ 18 (285)
T 1wdy_A 12 AVQNEDV 18 (285)
T ss_dssp HHHTTCH
T ss_pred HHHcCCH
Confidence 3344444
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=43.35 E-value=1.5e+02 Score=25.41 Aligned_cols=90 Identities=14% Similarity=0.019 Sum_probs=44.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 414 LIHGFCKAKEMDIAKELLFGMLDA--GFSP----SYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRR 487 (591)
Q Consensus 414 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 487 (591)
-++.+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+.+ .. .+++......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 456677777777777777766531 1121 0111112222222222333333344444 22 3345555555666
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 048533 488 FCKKEKVDYAQRLFNLMQG 506 (591)
Q Consensus 488 ~~~~g~~~~a~~~~~~~~~ 506 (591)
+.+.|+.++|.++|=+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 6666777766666665553
No 297
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=43.13 E-value=1.3e+02 Score=24.12 Aligned_cols=54 Identities=13% Similarity=0.186 Sum_probs=37.5
Q ss_pred HHHHHHHHHhCCCCcCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 048533 497 AQRLFNLMQGNGILGDS-VIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKI 550 (591)
Q Consensus 497 a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 550 (591)
...+|..|..+|+--.. ..|......+...|++.+|..+|+.-++.+-.|-...
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 55677777776654443 5567777777777888888888888777776665443
No 298
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=41.17 E-value=23 Score=30.81 Aligned_cols=53 Identities=11% Similarity=-0.041 Sum_probs=24.7
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHH--ccCChhhHHHHHHHH
Q 048533 174 SLAKDRLTDMVWKVYKKMVQLGVVANIHL-------YNVLIHACC--KSSDVDKVEKLLCEM 226 (591)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~ll~~~~--~~g~~~~a~~~~~~~ 226 (591)
..++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 33445666665556655555444433221 222332221 446655555555543
No 299
>2qcx_A Transcriptional activator TENA; UP-DOWN bundle, hydrolase; HET: PF1; 2.20A {Bacillus subtilis} PDB: 1yak_A* 1yaf_A* 1to9_A* 1tyh_A
Probab=40.91 E-value=1.1e+02 Score=26.89 Aligned_cols=61 Identities=13% Similarity=0.200 Sum_probs=41.6
Q ss_pred cCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcchhHHHHHHHHHHhc
Q 048533 511 GDSVIYTSLAYAYWRAG---EPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNEILDLFWSHVVDR 575 (591)
Q Consensus 511 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~ 575 (591)
|+ ..|...++.|...+ -.+....+++++... +++.-...+...|.+.-+++-.||+.+...
T Consensus 179 ~~-~~Y~~WI~~y~~~df~~~v~~~~~lld~l~~~---~s~~~~~~l~~~F~~a~~lE~~Fwd~a~~~ 242 (263)
T 2qcx_A 179 GH-PIYQKWIGTYGGDWFRQQVEEQINRFDELAEN---STEEVRAKMKENFVISSYYEYQFWGMAYRK 242 (263)
T ss_dssp CS-HHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHT---SCHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CC-cHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44 56778888776542 133334444444332 467777889999999999999999998654
No 300
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=40.83 E-value=1.4e+02 Score=27.69 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048533 445 SYSWLVDGYCNKNNEEALLKLLDEFV 470 (591)
Q Consensus 445 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 470 (591)
....++.-|...|+.++|...++++.
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 34455666666677777777666653
No 301
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=40.28 E-value=98 Score=22.05 Aligned_cols=56 Identities=20% Similarity=0.257 Sum_probs=32.2
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHH-----HHCCCCCCHHHHHHH
Q 048533 497 AQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDM-----YRRRLMITLKIYRSF 554 (591)
Q Consensus 497 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~~~~~l 554 (591)
|.++.+++...|+.|+..+..-++..|..-+- + +.++.++- ...|..|+..+++.+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 44555666666777777777777777766553 1 33322222 234677777766654
No 302
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=39.89 E-value=1.1e+02 Score=23.79 Aligned_cols=46 Identities=7% Similarity=0.036 Sum_probs=22.8
Q ss_pred HHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 048533 504 MQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKI 550 (591)
Q Consensus 504 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 550 (591)
+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aT 58 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVAT 58 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHH
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhh
Confidence 44455554442 22333444444555556666666665554444443
No 303
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=39.66 E-value=86 Score=21.21 Aligned_cols=58 Identities=7% Similarity=0.016 Sum_probs=30.3
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcc
Q 048533 503 LMQGNGILGDSVIYTSLAYAYWRAG-EPKACSDILDDMYRRRLMITLKIYRSFSASYAKD 561 (591)
Q Consensus 503 ~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 561 (591)
.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|.-..++.+.+.
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 3445566655533 23444444443 4556667777776665555555544444444443
No 304
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=38.63 E-value=1.4e+02 Score=23.44 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=31.4
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048533 322 ALRLREVMAAKGVYPG-VVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAP 371 (591)
Q Consensus 322 a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 371 (591)
+.++|..|..+|+--. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5667777766654332 3345555566666777777777777776665555
No 305
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=38.15 E-value=1.3e+02 Score=25.26 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=9.8
Q ss_pred HHccCChhhHHHHHHHHhhCC
Q 048533 210 CCKSSDVDKVEKLLCEMEFKD 230 (591)
Q Consensus 210 ~~~~g~~~~a~~~~~~~~~~~ 230 (591)
.++.|+.+.+..+++.+...|
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 344455555555554444333
No 306
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=36.02 E-value=1.9e+02 Score=24.21 Aligned_cols=57 Identities=23% Similarity=0.190 Sum_probs=33.2
Q ss_pred chHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 94 FKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 94 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
++.|+.+++.+.+... .+..+.+..-.+ +--..+..|.++|.+++|.++|++....+
T Consensus 88 LESAl~v~~~I~~e~~-l~~~l~e~i~~l---------lk~qAV~VCiek~~f~kA~eiLkr~~~~~ 144 (235)
T 3bu8_A 88 LESAINVLEMIKTEFT-LTEAVVESSRKL---------VKEAAVIICIKNKEFEKASKILKKHMSKD 144 (235)
T ss_dssp HHHHHHHHHHHHHHTT-CCHHHHHHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhhc-CcHHHHHHHHHH---------HHHHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 3457777777766432 122332222221 12234556888888888888888887753
No 307
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=35.48 E-value=1.6e+02 Score=23.14 Aligned_cols=53 Identities=19% Similarity=0.167 Sum_probs=34.3
Q ss_pred HHHHHHHHHhCCCCcCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 048533 497 AQRLFNLMQGNGILGDS-VIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLK 549 (591)
Q Consensus 497 a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 549 (591)
+..+|..|..+|+--.. ..|......+...|++++|..+|+.-++.+-.|-..
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 66677777666554333 556666667777777777777777777766666433
No 308
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=34.72 E-value=2.5e+02 Score=26.99 Aligned_cols=57 Identities=12% Similarity=0.180 Sum_probs=40.8
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHH
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLN 117 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 117 (591)
.+++.|+++-..+- .|+ ....|..-...+..+|+|++|..+--.... +...+...++
T Consensus 343 ~n~~lA~~lA~R~~--LpG---Ad~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~ 399 (494)
T 1bpo_A 343 QNPDLALRMAVRNN--LAG---AEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIR 399 (494)
T ss_dssp CCHHHHHHHHHHTT--CSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHH
T ss_pred CCHHHHHHHHHhcC--Ccc---HHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHH
Confidence 68999888876642 555 778888888999999999999888755543 3333444443
No 309
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=34.35 E-value=1.6e+02 Score=22.90 Aligned_cols=46 Identities=11% Similarity=0.233 Sum_probs=22.2
Q ss_pred HHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 048533 504 MQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKI 550 (591)
Q Consensus 504 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 550 (591)
+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|
T Consensus 18 l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aT 63 (150)
T 2xig_A 18 IKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISS 63 (150)
T ss_dssp HHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHH
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhh
Confidence 44455554332 22344444455555666666666666554444443
No 310
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=34.28 E-value=2.6e+02 Score=25.21 Aligned_cols=111 Identities=15% Similarity=0.096 Sum_probs=59.3
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHcCCCC---c---hHHHHHHHhhcCCCCCccchHHHHHHHHHhc-C-----ChHHH
Q 048533 82 WTMIHILTKNKHFKSAQNMLEKIALRDFLS---T---PSVLNALVKIHDDPDGNSHVLSWLVIFYANL-K-----MTQDG 149 (591)
Q Consensus 82 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~A 149 (591)
...+..+...|++++|+..|+.++..-+.. + ..-...++..+.. .+....++.-.+. + +....
T Consensus 106 Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icre-----Yilal~iEl~Rr~l~~~~~~~~kR~ 180 (320)
T 3mkr_B 106 LQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICRE-----YIVGLSMETERKKLPKETLEQQKRI 180 (320)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHH-----HHHHHHHHHHHTTSCCCSHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhcccCCchhHHHH
Confidence 345777888999999999999987743211 1 1111222221110 0111112222221 1 11233
Q ss_pred HHHHHHHhhCCCccC--HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 150 LQVFDQMRVHNLMPH--LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV 197 (591)
Q Consensus 150 ~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (591)
+++---+..-+..|. ..++..-+....+.+++..|..+-+++++.+..
T Consensus 181 lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 181 CEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 444444444444443 335566667777888888888888888887543
No 311
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=34.04 E-value=1.1e+02 Score=23.30 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCC
Q 048533 493 KVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGE 528 (591)
Q Consensus 493 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 528 (591)
..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 344455555555554434444443334444444443
No 312
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=33.64 E-value=1.1e+02 Score=23.79 Aligned_cols=44 Identities=14% Similarity=0.037 Sum_probs=20.3
Q ss_pred HHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 048533 504 MQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLK 549 (591)
Q Consensus 504 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 549 (591)
+.+.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..
T Consensus 10 L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~ 53 (145)
T 3eyy_A 10 LRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINIS 53 (145)
T ss_dssp HHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHH
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHh
Confidence 344455544421 22333333334 455566666665555444444
No 313
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=32.31 E-value=1.9e+02 Score=23.06 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=33.4
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 048533 322 ALRLREVMAAKGVYPG-VVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPD 372 (591)
Q Consensus 322 a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 372 (591)
+.++|..|..+|+--. ...|......+...|++.+|.++|+.-++.+-.|.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 5567777777765433 34455566666677777777777777777766663
No 314
>2gm8_A TENA homolog/THI-4 thiaminase; transcription, transferase; HET: HMH; 2.50A {Pyrobaculum aerophilum} SCOP: a.132.1.3 PDB: 2gm7_A*
Probab=31.45 E-value=2.2e+02 Score=23.97 Aligned_cols=58 Identities=12% Similarity=0.119 Sum_probs=41.2
Q ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcchhHHHHHHHHHHh
Q 048533 511 GDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNEILDLFWSHVVD 574 (591)
Q Consensus 511 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~ 574 (591)
|+ ..|...++.|... ++.++.+.+..+++.- + .....+...|.+.-+++-.||+.+-.
T Consensus 162 ~~-~~y~~Wi~~y~~~-~f~~~v~~~~~lld~~--~--~~~~~~~~~f~~a~~lE~~Fwd~a~~ 219 (221)
T 2gm8_A 162 PV-HVYKKWASVYLSP-EYRGLVERLRAVLDSS--G--LSAEELWPYFKEASLYELEFWQAAYE 219 (221)
T ss_dssp CC-HHHHHHHHHHHSH-HHHHHHHHHHHHHHTS--S--CCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CC-chHHHHHHHhCCH-HHHHHHHHHHHHHHHh--h--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44 5677888888765 4567777777777753 2 23346888888888999999998753
No 315
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.53 E-value=1.9e+02 Score=22.41 Aligned_cols=59 Identities=8% Similarity=-0.030 Sum_probs=34.0
Q ss_pred HhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 048533 156 MRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSD 215 (591)
Q Consensus 156 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 215 (591)
+.+.|.+++. .-..++..+...+..-.|.++++.+.+.++..+..|---.++.+...|-
T Consensus 13 l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 4455655332 3344455555555666677777777776665565554445556665554
No 316
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=29.96 E-value=1.6e+02 Score=25.93 Aligned_cols=13 Identities=15% Similarity=0.365 Sum_probs=5.4
Q ss_pred HccCChhhHHHHH
Q 048533 211 CKSSDVDKVEKLL 223 (591)
Q Consensus 211 ~~~g~~~~a~~~~ 223 (591)
+..|+.+-+.-++
T Consensus 103 ~~~g~~~~v~~Ll 115 (285)
T 3kea_A 103 VDSGNMQTVKLFV 115 (285)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 3444444333333
No 317
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=29.95 E-value=2.1e+02 Score=22.75 Aligned_cols=49 Identities=8% Similarity=0.069 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHhCCCCC--ChHHHHHHHH-H-----HHHcCCHHHHHHHHHHHH
Q 048533 352 GRIRDANRLLNEMNEKKIAP--DNVTCNTLIN-A-----YCKIGDTASAMKVKNRML 400 (591)
Q Consensus 352 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~-~-----~~~~~~~~~a~~~~~~~~ 400 (591)
|++-+|-++++..-.....+ ....|..||+ . +.+.|+...|..++.+..
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 66666666666665543333 3344555555 1 234555555555555553
No 318
>3oql_A TENA homolog; transcriptional activator, structural genomics, joint center structural genomics, JCSG, protein structure initiative; 2.54A {Pseudomonas syringae PV}
Probab=29.12 E-value=2.9e+02 Score=24.11 Aligned_cols=62 Identities=10% Similarity=0.082 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcchhHHHHHHHHHHhcC
Q 048533 513 SVIYTSLAYAYWRAGE--PKACSDILDDMYRRRLMITLKIYRSFSASYAKDNEILDLFWSHVVDRG 576 (591)
Q Consensus 513 ~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~ 576 (591)
...+...+..|....+ ..++.++++++.. -.|+..--..+..++.++-++.-.||++|....
T Consensus 185 ~~~~~~w~~~h~~~D~~H~~e~~~li~~l~~--~~~~~~e~~~~~~a~~~S~~~~~~fld~~y~~e 248 (262)
T 3oql_A 185 RKKSMKWLKMHAQYDDAHPWEALEIICTLVG--NKPSLQLQAELRQAVTKSYDYMYLFLERCIQLD 248 (262)
T ss_dssp HHHHHHHHHHHHTCC-CHHHHHHHHHHHHHC--SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ChHHHHHHHHHHHHHHHhHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456778888886555 3677888887775 346788888999999999999999999996653
No 319
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=28.85 E-value=1.8e+02 Score=24.17 Aligned_cols=11 Identities=9% Similarity=0.253 Sum_probs=4.7
Q ss_pred HcCCCchHHHH
Q 048533 89 TKNKHFKSAQN 99 (591)
Q Consensus 89 ~~~g~~~~A~~ 99 (591)
.+.|+++....
T Consensus 17 ~~~g~~~~~~~ 27 (240)
T 3eu9_A 17 TQYGIYERCRE 27 (240)
T ss_dssp HHTTCHHHHHH
T ss_pred HHcCChHHHHH
Confidence 34455443333
No 320
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=28.83 E-value=3.9e+02 Score=25.73 Aligned_cols=93 Identities=10% Similarity=-0.004 Sum_probs=48.6
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 048533 127 DGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVL 206 (591)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 206 (591)
|.-.++|..-...+...|++++|.++--...+.- --+..+.+.+-..=...|+..-.+..|.-+.+.|- .+..----+
T Consensus 358 pGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~gi-LRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g~-Ln~~ESlEl 435 (494)
T 1bpo_A 358 AGAEELFARKFNALFAQGNYSEAAKVAANAPKGI-LRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQ-LNKYESLEL 435 (494)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGS-SCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHSC-CCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcccc-ccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccCc-cchHHhhHH
Confidence 3334455555666888888888888766554432 22555554444433334555555566666655543 233333334
Q ss_pred HHHHHccCChhhHHH
Q 048533 207 IHACCKSSDVDKVEK 221 (591)
Q Consensus 207 l~~~~~~g~~~~a~~ 221 (591)
++.-...|+.+-..+
T Consensus 436 ~r~vL~q~r~~llek 450 (494)
T 1bpo_A 436 CRPVLQQGRKQLLEK 450 (494)
T ss_dssp HHHHHHTTCHHHHHH
T ss_pred hHHHHhccHHHHHHH
Confidence 444444444433333
No 321
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=27.23 E-value=1.9e+02 Score=22.03 Aligned_cols=59 Identities=15% Similarity=0.118 Sum_probs=33.3
Q ss_pred HhhCCCccCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 048533 156 MRVHNLMPHLHACTVLLNSLAKDR-LTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSD 215 (591)
Q Consensus 156 ~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 215 (591)
+.+.|.+++. .-..++..+...+ ..-.|.++++.+.+.++..+..|----++.+.+.|-
T Consensus 9 l~~~g~r~T~-qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 4455555332 2334455555555 566677777777777666566554444555555554
No 322
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=26.81 E-value=2.1e+02 Score=27.07 Aligned_cols=13 Identities=8% Similarity=0.051 Sum_probs=5.8
Q ss_pred HHHHHHHCCCCCC
Q 048533 535 ILDDMYRRRLMIT 547 (591)
Q Consensus 535 ~~~~~~~~~~~~~ 547 (591)
+++.+.+.|..|+
T Consensus 359 iv~~Ll~~ga~~~ 371 (437)
T 1n11_A 359 IVTLLLKNGASPN 371 (437)
T ss_dssp HHHHHHHTTCCSC
T ss_pred HHHHHHHCcCCCC
Confidence 3344444554443
No 323
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=26.74 E-value=58 Score=29.97 Aligned_cols=25 Identities=12% Similarity=0.295 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 048533 446 YSWLVDGYCNKNNEEALLKLLDEFV 470 (591)
Q Consensus 446 ~~~l~~~~~~~g~~~~a~~~~~~~~ 470 (591)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4456666777777777777776664
No 324
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=26.57 E-value=1.3e+02 Score=27.00 Aligned_cols=68 Identities=10% Similarity=0.121 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcchhH----HHHHHHHHHhcCCCChHHHH
Q 048533 516 YTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNEI----LDLFWSHVVDRGLMSKHIFK 584 (591)
Q Consensus 516 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 584 (591)
...++.-|...|+.++|.+.++++...... .......+..++.+.++. .-.+..++.+.|.++.+.|.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~ 240 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMK 240 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 456788888999999999999999653222 233556777778776432 23567888889999877643
No 325
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.28 E-value=2.3e+02 Score=22.04 Aligned_cols=61 Identities=8% Similarity=0.000 Sum_probs=36.9
Q ss_pred HHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 048533 155 QMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDV 216 (591)
Q Consensus 155 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 216 (591)
.+.+.|.+ ....-..++..+...+..-.|.++++.+.+.++..+..|---.++.+...|-+
T Consensus 17 ~l~~~g~r-~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLK-NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC---CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCC-CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 34556665 33344556666666666777888888887776666666544455666666543
No 326
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.13 E-value=2.5e+02 Score=30.23 Aligned_cols=46 Identities=7% Similarity=-0.099 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHhhh
Q 048533 514 VIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLK----IYRSFSASYA 559 (591)
Q Consensus 514 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~ 559 (591)
..|..++..+.+.+-++-+.++-+.+++.--.-|.. .|..+.++.+
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~ 947 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTAC 947 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHh
Confidence 367888888888888888888888888753222332 3445554444
No 327
>1rtw_A Transcriptional activator, putative; PF1337, TENA, thiamin, structural genomics, PSI, protein STR initiative; HET: MP5; 2.35A {Pyrococcus furiosus} SCOP: a.132.1.3
Probab=25.89 E-value=1.3e+02 Score=25.46 Aligned_cols=57 Identities=11% Similarity=0.115 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcchhHHHHHHHHHHh
Q 048533 515 IYTSLAYAYWRAG---EPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNEILDLFWSHVVD 574 (591)
Q Consensus 515 ~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~ 574 (591)
.|...+..|...+ -.+....+++++... +++.....+...+.+.-+++-.||+.+..
T Consensus 148 ~y~~Wi~~y~~~~f~~~v~~~~~~ld~~~~~---~~~~~~~~~~~~f~~a~~lE~~Fwd~a~~ 207 (220)
T 1rtw_A 148 PYQEFINHWSSQEFGEYVKRIEKILNSLAEK---HGEFEKERAREVFKEVSKFELIFWDIAYG 207 (220)
T ss_dssp TTHHHHHHHHSHHHHHHHHHHHHHHHHHHHT---SCHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667777776542 233344444444333 46777788999999999999999998843
No 328
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=25.39 E-value=1.5e+02 Score=24.01 Aligned_cols=13 Identities=15% Similarity=0.225 Sum_probs=6.1
Q ss_pred HhcCCHHHHHHHH
Q 048533 281 CREGRMREARRLF 293 (591)
Q Consensus 281 ~~~g~~~~A~~~~ 293 (591)
+..|+.+-+..++
T Consensus 80 ~~~~~~~~~~~Ll 92 (201)
T 3hra_A 80 GAQGRTEILAYML 92 (201)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 3445555444444
No 329
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=25.02 E-value=1.2e+02 Score=21.64 Aligned_cols=36 Identities=8% Similarity=0.116 Sum_probs=19.4
Q ss_pred ChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHH
Q 048533 145 MTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMV 184 (591)
Q Consensus 145 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 184 (591)
+.++|.++++.+.+.|+. +|..++.++...|+...|
T Consensus 52 ~~~~ar~Lld~L~~rG~~----Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQ----ALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSCTT----HHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcChH----HHHHHHHHHHHcCcHHHH
Confidence 455666666666655433 555555555554544433
No 330
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=24.18 E-value=1.5e+02 Score=22.40 Aligned_cols=46 Identities=15% Similarity=0.207 Sum_probs=30.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048533 240 TLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGR 285 (591)
Q Consensus 240 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 285 (591)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3455555566667778888888777666666666666666666653
No 331
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.99 E-value=1.5e+02 Score=23.48 Aligned_cols=59 Identities=8% Similarity=0.108 Sum_probs=35.7
Q ss_pred HhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCC
Q 048533 226 MEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMERE--GISPDIVTYNSLIHGFCREGR 285 (591)
Q Consensus 226 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~ 285 (591)
+.+.|.+.+ ..-..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-
T Consensus 24 L~~~g~r~T-~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 24 LRQGGLKYT-KQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHTCCCC-HHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 344455443 23445556666666677777777777766 555666666666666666663
No 332
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=23.89 E-value=2.2e+02 Score=27.36 Aligned_cols=68 Identities=10% Similarity=0.098 Sum_probs=50.1
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHcCCCCc--hHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048533 82 WTMIHILTKNKHFKSAQNMLEKIALRDFLST--PSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVH 159 (591)
Q Consensus 82 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 159 (591)
+.+..+|.+.|+..-+..+++.+...+..+. ....... ......++..+..++++.+|.+.|..+.+.
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~----------v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQ----------IEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccce----------EeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 4688999999999999999999887654211 1111111 134566888999999999999998887764
No 333
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=23.63 E-value=2.1e+02 Score=22.32 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=33.1
Q ss_pred HhhCCCccCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 048533 156 MRVHNLMPHLHACTVLLNSLAKDR-LTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDV 216 (591)
Q Consensus 156 ~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 216 (591)
+.+.|.+++. .-..++..+...+ ..-.|.++++.+.+.++..+..|----++.+...|-+
T Consensus 8 l~~~g~r~T~-qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 8 LKDAGLKVTL-PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHTTCCCCH-HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4455555332 2233445554444 5566777777777766655655544445556655543
No 334
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=23.52 E-value=1e+02 Score=19.61 Aligned_cols=23 Identities=13% Similarity=0.036 Sum_probs=14.8
Q ss_pred hcCChHHHHHHHHHHhhCCCccC
Q 048533 142 NLKMTQDGLQVFDQMRVHNLMPH 164 (591)
Q Consensus 142 ~~~~~~~A~~~~~~~~~~~~~~~ 164 (591)
..|+++.|+..|-.|...+..|+
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred cCCCHHHHHHHHHcCcCCCCCCC
Confidence 35677777777777766555543
No 335
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.24 E-value=1.9e+02 Score=22.39 Aligned_cols=58 Identities=7% Similarity=-0.056 Sum_probs=31.2
Q ss_pred HhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 048533 156 MRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSD 215 (591)
Q Consensus 156 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 215 (591)
+.+.|.+++. .-..++..+...+ .-.|.++++.+.+.++..+..|----++.+...|-
T Consensus 10 L~~~g~r~T~-qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 10 LRQRGYRLTP-QRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHTTTCCCCH-HHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCH-HHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 4445555432 2233444444445 55677777777766665555554344555555553
No 336
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=23.01 E-value=2.1e+02 Score=22.32 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=17.0
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048533 250 MHYEALAVQDRMEREGISPDIVTYNSLIHGFCREG 284 (591)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 284 (591)
..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555555444444444444444444444
No 337
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=22.59 E-value=5.1e+02 Score=24.72 Aligned_cols=152 Identities=13% Similarity=0.012 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHh
Q 048533 388 DTASAMKVKNRMLE--------AGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGF----SPSYCSYSWLVDGYCN 455 (591)
Q Consensus 388 ~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~ 455 (591)
..++...++..... .++..+......++.. ..|+..++..+++.+..... .....+...+-.+..+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Q ss_pred c------------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHh
Q 048533 456 K------------------------NNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEK-----VDYAQRLFNLMQG 506 (591)
Q Consensus 456 ~------------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~ 506 (591)
. ++.+.|+.++..|.+.|..|....-..+..+.-.-|. ...|...++....
T Consensus 244 ~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~ 323 (447)
T 3pvs_A 244 RSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTR 323 (447)
T ss_dssp CCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHH
T ss_pred hhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHH
Q ss_pred CCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 507 NGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 507 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
.|.+-........+-.++.+-+...+...++.+.+
T Consensus 324 ~g~pe~~~~l~~~~~~la~~pksn~~~~a~~~a~~ 358 (447)
T 3pvs_A 324 VGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALA 358 (447)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
No 338
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=22.54 E-value=1.3e+02 Score=23.05 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=30.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048533 240 TLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGR 285 (591)
Q Consensus 240 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 285 (591)
.++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 4455555555666777777777777666666666666666666654
No 339
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=22.51 E-value=2.3e+02 Score=23.39 Aligned_cols=24 Identities=8% Similarity=0.099 Sum_probs=13.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhC
Q 048533 136 LVIFYANLKMTQDGLQVFDQMRVH 159 (591)
Q Consensus 136 l~~~~~~~~~~~~A~~~~~~~~~~ 159 (591)
.+..|.+.|.+++|.++|++....
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHccchHHHHHHHHHHhcC
Confidence 344566666666666666665443
No 340
>3rm5_A Hydroxymethylpyrimidine/phosphomethylpyrimidine K THI20; HMP kinase (THID), thiaminase II, transferase; 2.68A {Saccharomyces cerevisiae}
Probab=22.26 E-value=1.1e+02 Score=30.52 Aligned_cols=61 Identities=13% Similarity=0.191 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHhhhcchhHHHHHHHHHHhc
Q 048533 514 VIYTSLAYAYWRAGEPKACSDILDDMYRR-RLMITLKIYRSFSASYAKDNEILDLFWSHVVDR 575 (591)
Q Consensus 514 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~ 575 (591)
..|...++.|.. .++.++.+.+..++++ ....++.-...+.+.|.+.-+++-.||++..+.
T Consensus 488 ~~Y~~WI~~Y~~-~~f~~~v~~~~~~ld~~~~~~~~~~~~~l~~~F~~a~~lE~~Fwd~a~~~ 549 (550)
T 3rm5_A 488 SVYHEWCETYAS-SWYREAMDEGEKLLNHILETYPPEQLDTLVTIYAEVCELETNFWTAALEY 549 (550)
T ss_dssp SHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHhCC-HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 468888888774 3455554444444432 222355577888999999999999999987654
No 341
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=22.20 E-value=1.5e+02 Score=22.34 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=13.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 048533 520 AYAYWRAGEPKACSDILDDMYRRRLMITLK 549 (591)
Q Consensus 520 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 549 (591)
+..+...+..-.|.++++.+.+.+...+..
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~ 46 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLT 46 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHh
Confidence 333334444445555555555544433433
No 342
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=22.08 E-value=4.4e+02 Score=23.80 Aligned_cols=51 Identities=4% Similarity=-0.141 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhCCCCcCH--HHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 048533 494 VDYAQRLFNLMQGNGILGDS--VIYTSLAYAYWRAGEPKACSDILDDMYRRRL 544 (591)
Q Consensus 494 ~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 544 (591)
..+..++-..+...++.|.. -++..-+....+.+++..|..+-+++++.+.
T Consensus 186 ~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 186 TVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 34444444444444444443 2334455556666666666666666666554
No 343
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=21.69 E-value=2.6e+02 Score=25.93 Aligned_cols=82 Identities=6% Similarity=0.126 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC---H-HHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 048533 480 VYRALIRRFCKKEKVDYAQRLFNLMQGNGILGD---S-VIYTSLAYAYWRAG-EPKACSDILDDMYRRRLMITLKIYRSF 554 (591)
Q Consensus 480 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~-~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l 554 (591)
....++.-|...|+.++|.+.++++.. |+ . .+...+..++-+.. ..+.+..++..+...++.+.......+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf 89 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAF 89 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 456788889999999999999998852 22 2 23333333443321 134566777777877766555555555
Q ss_pred HHhhhcchhHH
Q 048533 555 SASYAKDNEIL 565 (591)
Q Consensus 555 i~~~~~~~~~~ 565 (591)
...+....+..
T Consensus 90 ~~lle~l~Dl~ 100 (364)
T 3l6a_A 90 LNVLDQCPKLE 100 (364)
T ss_dssp HHHHHTHHHHH
T ss_pred HHHHhhChHhc
Confidence 55555555443
No 344
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=21.48 E-value=3.3e+02 Score=22.16 Aligned_cols=141 Identities=11% Similarity=-0.020 Sum_probs=60.1
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHH
Q 048533 164 HLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIA 243 (591)
Q Consensus 164 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 243 (591)
+...-...+..+.+.+..+ +...+..+.+ .++..+-...+.++.+.|+.+....+ ..+.. .++...-...+.
T Consensus 32 ~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L-~~~l~---~~~~~vr~~a~~ 103 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPL-IKALK---DEDGWVRQSAAV 103 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHH-HHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHH-HHHHc---CCCHHHHHHHHH
Confidence 4444444555555555432 2233333333 23444444555555555543333222 22222 234444445555
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCC
Q 048533 244 LYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRAND 318 (591)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 318 (591)
++...|+.+ +...+..+.. .++..+-...+.++...|..+ +...+..+.+ .++...-...+.++.+.+.
T Consensus 104 aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 104 ALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK-DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT-CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc-CCCHHHHHHHHHHHHHhCc
Confidence 555555533 2333333332 245445455555555555432 2222222221 3444444444444444444
No 345
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=21.32 E-value=87 Score=24.67 Aligned_cols=49 Identities=14% Similarity=0.289 Sum_probs=33.7
Q ss_pred ChhHHHHHHHHHHHCCCC-CCHHHHHHHHHhhhc---chhHHHHHHHHHHhcCC
Q 048533 528 EPKACSDILDDMYRRRLM-ITLKIYRSFSASYAK---DNEILDLFWSHVVDRGL 577 (591)
Q Consensus 528 ~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~---~~~~~~~~~~~~~~~~~ 577 (591)
.+++|.+.+..|++.-+. -.+..||.++..+.. .++. ..||..+++.++
T Consensus 73 ~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~LK~~l~~~~l-~~FW~~Iv~~~l 125 (152)
T 1rw2_A 73 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL-NHFWEIVVQDGI 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHSCC-HHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH-HHHHHHHHHCCc
Confidence 577888888888876433 357789988887754 2233 568988876443
No 346
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=20.41 E-value=2.1e+02 Score=25.10 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=8.1
Q ss_pred HHHHHccCChhhHHHHH
Q 048533 207 IHACCKSSDVDKVEKLL 223 (591)
Q Consensus 207 l~~~~~~g~~~~a~~~~ 223 (591)
+...+..|+.+-+..++
T Consensus 66 L~~A~~~g~~~~v~~Ll 82 (285)
T 3kea_A 66 LHQAATLEDTKIVKILL 82 (285)
T ss_dssp HHHHTTSSSCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 34445556655444433
No 347
>3mvu_A TENA family transcriptional regulator; TENA/THI-4/PQQC family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP} SCOP: a.132.1.0
Probab=20.36 E-value=2.7e+02 Score=23.50 Aligned_cols=58 Identities=12% Similarity=0.252 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH-----C-CC-CCCHHHHHHHHHhhhcchhHHHHHHHHHH
Q 048533 515 IYTSLAYAYWRAGEPKACSDILDDMYR-----R-RL-MITLKIYRSFSASYAKDNEILDLFWSHVV 573 (591)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-~~-~~~~~~~~~li~~~~~~~~~~~~~~~~~~ 573 (591)
.|...+..|... ++.++.+.+..+++ + +. ..++.....+...|.+.-+++-.||++.-
T Consensus 160 ~y~~WI~~y~~~-~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~F~~a~~lE~~Fwd~a~ 224 (226)
T 3mvu_A 160 LYGDWIDTYGGD-DYQAACKAVGTLLDDALERRLGAEFTSSPRWSRLCQTFHTATELEVGFWQMGL 224 (226)
T ss_dssp TTHHHHHHHHSH-HHHHHHHHHHHHHHHHHHHHHCTTGGGSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHcCCH-HHHHHHHHHHHHHCchhHHHHhhhccChHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467788888743 45555555555554 2 32 34566788899999999999999999763
No 348
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.34 E-value=1.5e+02 Score=27.15 Aligned_cols=64 Identities=9% Similarity=0.145 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCC
Q 048533 481 YRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAG-EPKACSDILDDMYRRRLM 545 (591)
Q Consensus 481 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~ 545 (591)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.. ..+.+.+++..+.+.|+.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 456777788888888888877776421111 0122222222332211 234456666667666654
No 349
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=20.32 E-value=4.6e+02 Score=23.35 Aligned_cols=13 Identities=0% Similarity=-0.021 Sum_probs=6.3
Q ss_pred HHHHHHHCCCCCC
Q 048533 535 ILDDMYRRRLMIT 547 (591)
Q Consensus 535 ~~~~~~~~~~~~~ 547 (591)
+++.+++.|-.||
T Consensus 316 iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 316 LVKVLLSHGAKED 328 (337)
T ss_dssp HHHHHHHTTCCC-
T ss_pred HHHHHHHCcCCCC
Confidence 4445555655544
Done!